Query 043667
Match_columns 387
No_of_seqs 157 out of 1699
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 12:11:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043667.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043667hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eco_A Uncharacterized protein 99.9 1.2E-25 4E-30 223.1 21.6 332 21-377 239-603 (636)
2 3rgz_A Protein brassinosteroid 99.9 1.8E-25 6.2E-30 226.6 21.4 64 311-377 656-721 (768)
3 4eco_A Uncharacterized protein 99.9 3E-25 1E-29 220.2 22.5 319 30-381 205-586 (636)
4 3vq2_A TLR4, TOLL-like recepto 99.9 3.2E-24 1.1E-28 212.2 28.8 154 201-371 396-556 (606)
5 3rgz_A Protein brassinosteroid 99.9 5.9E-25 2E-29 222.8 22.6 323 30-381 199-559 (768)
6 4ecn_A Leucine-rich repeat pro 99.9 1.6E-24 5.4E-29 219.5 23.6 351 2-377 444-843 (876)
7 3t6q_A CD180 antigen; protein- 99.9 6.7E-24 2.3E-28 209.8 26.4 65 2-70 53-120 (606)
8 3t6q_A CD180 antigen; protein- 99.9 4.4E-23 1.5E-27 203.9 31.0 151 5-169 32-192 (606)
9 1o6v_A Internalin A; bacterial 99.9 4.3E-23 1.5E-27 197.5 28.9 324 6-379 46-393 (466)
10 1o6v_A Internalin A; bacterial 99.9 2E-23 6.8E-28 199.8 26.5 311 3-355 65-392 (466)
11 2z81_A CD282 antigen, TOLL-lik 99.9 4.4E-24 1.5E-28 208.6 21.9 105 264-379 387-491 (549)
12 4ecn_A Leucine-rich repeat pro 99.9 8.5E-24 2.9E-28 214.1 24.2 327 21-381 440-826 (876)
13 4fmz_A Internalin; leucine ric 99.9 4.4E-23 1.5E-27 189.8 25.0 300 30-371 43-344 (347)
14 3vq2_A TLR4, TOLL-like recepto 99.9 9.8E-23 3.3E-27 201.5 28.3 88 283-376 419-512 (606)
15 1ziw_A TOLL-like receptor 3; i 99.9 3.7E-22 1.3E-26 200.0 32.2 58 4-64 71-131 (680)
16 2z81_A CD282 antigen, TOLL-lik 99.9 3.6E-23 1.2E-27 202.1 22.7 346 6-386 26-476 (549)
17 2z7x_B TOLL-like receptor 1, v 99.9 1.7E-22 6E-27 196.0 27.1 155 201-371 321-479 (520)
18 2z7x_B TOLL-like receptor 1, v 99.9 3E-22 1E-26 194.4 24.3 336 6-379 21-462 (520)
19 3v47_A TOLL-like receptor 5B a 99.9 2.5E-22 8.5E-27 191.6 23.1 340 5-373 29-408 (455)
20 2z63_A TOLL-like receptor 4, v 99.9 5.9E-22 2E-26 194.4 24.4 110 264-379 396-512 (570)
21 3o6n_A APL1; leucine-rich repe 99.9 1.1E-21 3.7E-26 183.5 24.5 296 30-371 44-350 (390)
22 1ziw_A TOLL-like receptor 3; i 99.9 1.3E-21 4.6E-26 195.9 26.5 125 6-145 25-155 (680)
23 3j0a_A TOLL-like receptor 5; m 99.9 2.3E-21 7.7E-26 198.5 27.7 102 136-241 267-372 (844)
24 2z63_A TOLL-like receptor 4, v 99.9 8.9E-22 3E-26 193.1 23.4 347 2-377 72-535 (570)
25 3j0a_A TOLL-like receptor 5; m 99.9 4.8E-21 1.6E-25 196.1 29.6 342 5-379 23-444 (844)
26 4fmz_A Internalin; leucine ric 99.9 8E-22 2.7E-26 181.4 21.6 297 4-347 42-343 (347)
27 2id5_A Lingo-1, leucine rich r 99.9 3.7E-21 1.3E-25 184.7 26.6 304 9-347 14-330 (477)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.1E-21 2.1E-25 186.9 28.3 122 6-145 52-179 (562)
29 3v47_A TOLL-like receptor 5B a 99.9 1.4E-20 4.8E-25 179.5 27.8 350 9-386 13-398 (455)
30 3bz5_A Internalin-J, INLJ; leu 99.9 5.2E-21 1.8E-25 182.1 24.1 302 4-353 40-354 (457)
31 2id5_A Lingo-1, leucine rich r 99.9 4.1E-21 1.4E-25 184.4 23.5 288 5-322 31-331 (477)
32 3oja_B Anopheles plasmodium-re 99.9 5.9E-21 2E-25 188.2 24.1 296 30-371 50-356 (597)
33 3bz5_A Internalin-J, INLJ; leu 99.9 3.5E-20 1.2E-24 176.3 23.2 277 2-327 60-354 (457)
34 1jl5_A Outer protein YOPM; leu 99.9 3.3E-19 1.1E-23 169.5 29.8 294 7-369 72-366 (454)
35 1jl5_A Outer protein YOPM; leu 99.9 9.4E-20 3.2E-24 173.2 26.0 259 5-322 90-368 (454)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.4E-20 1.9E-24 180.1 24.1 331 7-372 32-509 (562)
37 3o6n_A APL1; leucine-rich repe 99.9 2.4E-20 8.2E-25 174.3 20.6 302 5-351 44-352 (390)
38 4g8a_A TOLL-like receptor 4; l 99.8 4.2E-19 1.4E-23 176.1 26.9 153 202-370 418-577 (635)
39 3oja_B Anopheles plasmodium-re 99.8 1.1E-19 3.6E-24 179.2 21.9 299 5-347 50-355 (597)
40 1xku_A Decorin; proteoglycan, 99.8 1.5E-18 5.2E-23 158.3 25.7 213 111-346 98-328 (330)
41 4g8a_A TOLL-like receptor 4; l 99.8 2.4E-18 8.3E-23 170.6 27.7 127 5-145 51-183 (635)
42 2ft3_A Biglycan; proteoglycan, 99.8 1.7E-18 5.7E-23 158.2 22.4 280 32-347 34-330 (332)
43 4fcg_A Uncharacterized protein 99.8 1.6E-18 5.6E-23 157.8 20.4 228 5-297 80-310 (328)
44 3g06_A SSPH2 (leucine-rich rep 99.8 3.7E-17 1.3E-21 160.4 26.1 255 6-347 40-294 (622)
45 4fcg_A Uncharacterized protein 99.8 4.2E-18 1.4E-22 155.1 17.7 224 112-369 80-310 (328)
46 2p1m_B Transport inhibitor res 99.8 2.8E-21 9.7E-26 190.5 -4.5 353 4-372 64-518 (594)
47 3ogk_B Coronatine-insensitive 99.8 1.8E-20 6.1E-25 184.7 -1.8 108 263-375 402-527 (592)
48 1xku_A Decorin; proteoglycan, 99.7 9.6E-17 3.3E-21 146.3 20.2 278 6-321 31-329 (330)
49 2ft3_A Biglycan; proteoglycan, 99.7 6.6E-17 2.2E-21 147.6 16.9 277 6-322 33-331 (332)
50 1ogq_A PGIP-2, polygalacturona 99.7 2.3E-17 7.8E-22 149.3 13.5 241 31-324 50-304 (313)
51 3g06_A SSPH2 (leucine-rich rep 99.7 6.3E-16 2.2E-20 151.7 24.6 256 31-373 40-297 (622)
52 1ogq_A PGIP-2, polygalacturona 99.7 2.1E-17 7.3E-22 149.5 13.1 228 134-379 75-310 (313)
53 3zyj_A Leucine-rich repeat-con 99.7 9.1E-16 3.1E-20 145.5 23.0 233 34-297 46-288 (440)
54 3zyi_A Leucine-rich repeat-con 99.7 1.3E-15 4.5E-20 144.9 23.9 141 34-189 57-206 (452)
55 3zyj_A Leucine-rich repeat-con 99.7 1.1E-15 3.7E-20 144.9 23.2 200 152-370 84-289 (440)
56 2z80_A TOLL-like receptor 2, v 99.7 2.8E-16 9.4E-21 144.7 18.5 263 30-347 30-311 (353)
57 3ogk_B Coronatine-insensitive 99.7 7.9E-19 2.7E-23 172.9 0.8 348 4-375 71-477 (592)
58 2z80_A TOLL-like receptor 2, v 99.7 2.2E-16 7.7E-21 145.3 16.8 271 54-375 31-316 (353)
59 3zyi_A Leucine-rich repeat-con 99.7 1.3E-15 4.4E-20 145.0 22.5 200 152-370 95-300 (452)
60 1z7x_W Ribonuclease inhibitor; 99.7 2.2E-19 7.4E-24 171.5 -4.4 153 5-167 2-181 (461)
61 3o53_A Protein LRIM1, AGAP0063 99.7 2.2E-17 7.4E-22 149.7 8.1 240 30-353 33-278 (317)
62 2p1m_B Transport inhibitor res 99.7 1.5E-18 5.3E-23 170.9 0.2 221 30-272 65-346 (594)
63 1z7x_W Ribonuclease inhibitor; 99.7 1.8E-18 6.3E-23 165.0 -0.4 343 4-372 26-439 (461)
64 2z66_A Variable lymphocyte rec 99.7 1.3E-15 4.5E-20 137.2 17.9 98 8-123 9-111 (306)
65 2xwt_C Thyrotropin receptor; s 99.7 1.5E-15 5.1E-20 131.8 15.2 179 177-373 53-239 (239)
66 1ozn_A Reticulon 4 receptor; N 99.7 8.4E-15 2.9E-19 130.6 19.8 213 116-347 14-235 (285)
67 1ozn_A Reticulon 4 receptor; N 99.7 2.3E-14 8E-19 127.7 22.2 214 9-242 14-236 (285)
68 2z66_A Variable lymphocyte rec 99.6 7.6E-15 2.6E-19 132.2 17.4 52 34-93 10-61 (306)
69 2xwt_C Thyrotropin receptor; s 99.6 4.8E-15 1.6E-19 128.6 14.4 190 179-386 31-229 (239)
70 3oja_A Leucine-rich immune mol 99.6 7.1E-15 2.4E-19 141.0 16.4 139 30-188 33-178 (487)
71 3o53_A Protein LRIM1, AGAP0063 99.6 1.4E-14 4.9E-19 131.1 15.5 240 111-377 32-279 (317)
72 4ay9_X Follicle-stimulating ho 99.6 2.1E-14 7.2E-19 131.9 15.6 228 125-369 20-255 (350)
73 3oja_A Leucine-rich immune mol 99.6 5.3E-14 1.8E-18 134.9 18.0 230 111-368 32-270 (487)
74 2ast_B S-phase kinase-associat 99.6 6.9E-16 2.4E-20 140.9 4.4 170 5-190 46-233 (336)
75 4ay9_X Follicle-stimulating ho 99.6 8.2E-14 2.8E-18 127.9 17.6 215 112-346 29-255 (350)
76 2z62_A TOLL-like receptor 4, v 99.5 1.4E-13 4.9E-18 121.9 15.3 199 129-346 21-233 (276)
77 2o6q_A Variable lymphocyte rec 99.5 9.9E-13 3.4E-17 116.1 19.8 198 6-242 16-216 (270)
78 2ast_B S-phase kinase-associat 99.5 7.8E-15 2.7E-19 133.9 5.2 248 113-377 47-309 (336)
79 2o6q_A Variable lymphocyte rec 99.5 9.8E-13 3.3E-17 116.2 18.4 194 136-347 17-215 (270)
80 1h6u_A Internalin H; cell adhe 99.5 3.1E-13 1.1E-17 121.7 15.2 194 133-354 39-233 (308)
81 3rfs_A Internalin B, repeat mo 99.5 2.3E-13 7.8E-18 120.4 13.7 80 30-123 40-119 (272)
82 1wwl_A Monocyte differentiatio 99.5 6E-15 2.1E-19 133.3 2.5 157 179-352 149-310 (312)
83 1wwl_A Monocyte differentiatio 99.5 3E-13 1E-17 122.1 13.6 152 204-374 149-309 (312)
84 1p9a_G Platelet glycoprotein I 99.5 1.1E-12 3.9E-17 117.0 17.0 67 221-297 138-204 (290)
85 2z62_A TOLL-like receptor 4, v 99.5 1.1E-12 3.8E-17 116.1 16.2 209 14-244 15-237 (276)
86 1p9a_G Platelet glycoprotein I 99.5 3.5E-12 1.2E-16 113.7 18.6 193 111-322 8-206 (290)
87 3rfs_A Internalin B, repeat mo 99.4 8.7E-13 3E-17 116.6 13.6 154 152-321 59-215 (272)
88 1h6u_A Internalin H; cell adhe 99.4 1.7E-12 5.9E-17 116.8 15.4 193 111-329 39-234 (308)
89 4glp_A Monocyte differentiatio 99.4 9.9E-13 3.4E-17 118.6 9.9 149 203-369 144-303 (310)
90 4glp_A Monocyte differentiatio 99.3 1.4E-11 4.8E-16 111.0 13.5 201 135-352 91-308 (310)
91 1h6t_A Internalin B; cell adhe 99.3 2E-11 6.7E-16 108.9 13.2 99 6-123 46-144 (291)
92 4ezg_A Putative uncharacterize 99.3 1.9E-11 6.4E-16 102.5 12.0 55 134-189 135-191 (197)
93 3m19_A Variable lymphocyte rec 99.3 1E-10 3.5E-15 102.0 16.1 171 157-347 15-189 (251)
94 1h6t_A Internalin B; cell adhe 99.3 4E-11 1.4E-15 107.0 13.6 129 202-354 88-216 (291)
95 2ca6_A RAN GTPase-activating p 99.3 2.4E-12 8.4E-17 119.7 4.9 225 111-371 30-314 (386)
96 2ca6_A RAN GTPase-activating p 99.2 1E-12 3.4E-17 122.3 0.5 34 30-64 31-70 (386)
97 4ezg_A Putative uncharacterize 99.2 8.1E-11 2.8E-15 98.6 12.1 83 227-320 108-190 (197)
98 1m9s_A Internalin B; cell inva 99.2 6.8E-11 2.3E-15 115.8 12.9 165 5-190 42-208 (605)
99 3goz_A Leucine-rich repeat-con 99.2 1.6E-12 5.4E-17 119.9 0.4 54 12-69 4-65 (362)
100 3m19_A Variable lymphocyte rec 99.2 4.1E-10 1.4E-14 98.1 15.4 172 136-322 15-190 (251)
101 1m9s_A Internalin B; cell inva 99.1 3E-10 1E-14 111.2 13.3 175 152-354 39-213 (605)
102 3cvr_A Invasion plasmid antige 99.1 4.3E-10 1.5E-14 109.1 14.2 174 136-347 60-240 (571)
103 3e6j_A Variable lymphocyte rec 99.1 8.2E-10 2.8E-14 94.7 13.1 125 231-370 40-169 (229)
104 1xeu_A Internalin C; cellular 99.1 3.6E-10 1.2E-14 99.1 10.8 55 134-189 127-182 (263)
105 3cvr_A Invasion plasmid antige 99.1 2.1E-09 7E-14 104.3 16.7 181 114-330 60-249 (571)
106 1xeu_A Internalin C; cellular 99.1 1.8E-09 6.1E-14 94.7 13.7 146 175-347 37-182 (263)
107 2o6s_A Variable lymphocyte rec 99.1 1.1E-09 3.6E-14 92.5 11.6 58 179-240 28-85 (208)
108 3goz_A Leucine-rich repeat-con 99.1 5.5E-11 1.9E-15 109.5 3.5 78 112-190 21-120 (362)
109 2ell_A Acidic leucine-rich nuc 99.0 9.6E-10 3.3E-14 89.4 9.7 133 229-379 22-165 (168)
110 2v9t_B SLIT homolog 2 protein 99.0 2.1E-09 7.3E-14 91.5 12.2 126 205-347 33-162 (220)
111 2ell_A Acidic leucine-rich nuc 99.0 1.3E-09 4.3E-14 88.7 10.2 105 4-123 22-130 (168)
112 3e6j_A Variable lymphocyte rec 99.0 4E-09 1.4E-13 90.4 12.6 129 179-322 40-170 (229)
113 3sb4_A Hypothetical leucine ri 99.0 3.2E-09 1.1E-13 96.3 12.2 257 5-295 48-328 (329)
114 3sb4_A Hypothetical leucine ri 99.0 1.2E-09 4.2E-14 99.1 9.3 229 112-356 24-315 (329)
115 2o6s_A Variable lymphocyte rec 99.0 1.3E-08 4.3E-13 85.8 13.8 155 204-381 28-186 (208)
116 2v70_A SLIT-2, SLIT homolog 2 98.9 6.6E-09 2.3E-13 88.4 12.1 122 211-347 37-163 (220)
117 2xot_A Amphoterin-induced prot 98.9 3.9E-09 1.3E-13 97.0 10.8 127 179-320 39-172 (361)
118 2je0_A Acidic leucine-rich nuc 98.9 1.6E-09 5.5E-14 86.2 7.0 105 4-123 15-123 (149)
119 2v70_A SLIT-2, SLIT homolog 2 98.9 3.3E-08 1.1E-12 84.1 14.1 147 159-322 14-164 (220)
120 1a9n_A U2A', U2A'; complex (nu 98.9 5.4E-09 1.8E-13 85.7 8.8 109 3-124 16-124 (176)
121 1dce_A Protein (RAB geranylger 98.9 2.3E-11 7.9E-16 118.3 -6.7 202 153-380 346-552 (567)
122 2v9t_B SLIT homolog 2 protein 98.9 2.7E-08 9.4E-13 84.6 12.9 108 201-322 53-163 (220)
123 2xot_A Amphoterin-induced prot 98.9 1.4E-08 4.9E-13 93.3 11.7 167 183-371 22-200 (361)
124 4fdw_A Leucine rich hypothetic 98.9 7.3E-07 2.5E-11 82.9 23.2 223 136-384 158-393 (401)
125 1a9n_A U2A', U2A'; complex (nu 98.8 1.3E-08 4.4E-13 83.4 8.5 128 228-372 16-152 (176)
126 2wfh_A SLIT homolog 2 protein 98.8 4.6E-08 1.6E-12 81.4 11.6 118 211-347 15-136 (193)
127 4fs7_A Uncharacterized protein 98.8 1.8E-06 6.3E-11 80.1 23.5 40 30-73 70-111 (394)
128 4fs7_A Uncharacterized protein 98.8 1.3E-06 4.6E-11 81.0 22.3 318 1-376 66-393 (394)
129 2je0_A Acidic leucine-rich nuc 98.8 2E-08 6.7E-13 79.8 8.4 123 230-368 16-148 (149)
130 2wfh_A SLIT homolog 2 protein 98.8 5.7E-08 2E-12 80.8 11.0 121 8-146 12-137 (193)
131 1w8a_A SLIT protein; signaling 98.7 1.3E-07 4.5E-12 78.5 12.3 100 8-123 10-112 (192)
132 4fdw_A Leucine rich hypothetic 98.7 1.8E-06 6E-11 80.3 20.3 230 32-297 136-379 (401)
133 1w8a_A SLIT protein; signaling 98.7 1.4E-07 4.6E-12 78.4 11.2 120 211-347 13-136 (192)
134 1dce_A Protein (RAB geranylger 98.7 7E-08 2.4E-12 93.9 10.2 101 6-123 441-543 (567)
135 2o6r_A Variable lymphocyte rec 98.6 3.6E-07 1.2E-11 74.7 12.4 119 211-347 12-134 (177)
136 2o6r_A Variable lymphocyte rec 98.6 2.7E-07 9.2E-12 75.4 11.3 122 7-146 8-135 (177)
137 4b8c_D Glucose-repressible alc 98.6 6E-08 2E-12 97.3 7.1 106 2-123 220-326 (727)
138 4b8c_D Glucose-repressible alc 98.5 1.3E-07 4.3E-12 94.9 7.9 148 201-370 221-369 (727)
139 3e4g_A ATP synthase subunit S, 98.5 5E-08 1.7E-12 78.8 4.0 37 339-375 116-154 (176)
140 4gt6_A Cell surface protein; l 98.5 6.9E-05 2.3E-09 69.4 24.8 278 32-346 65-366 (394)
141 3g39_A Variable lymphocyte rec 98.4 1.6E-06 5.3E-11 70.4 10.7 101 7-123 10-112 (170)
142 2r9u_A Variable lymphocyte rec 98.4 1.5E-06 5.2E-11 70.7 10.6 101 233-351 14-118 (174)
143 2r9u_A Variable lymphocyte rec 98.4 1.8E-06 6.1E-11 70.3 10.7 100 8-123 14-115 (174)
144 3e4g_A ATP synthase subunit S, 98.4 3.2E-07 1.1E-11 74.1 5.8 86 211-304 66-155 (176)
145 3g39_A Variable lymphocyte rec 98.4 2.5E-06 8.6E-11 69.1 10.3 99 232-347 10-112 (170)
146 4gt6_A Cell surface protein; l 98.4 0.00036 1.2E-08 64.5 26.2 293 50-379 59-386 (394)
147 1ds9_A Outer arm dynein; leuci 98.2 1.1E-07 3.8E-12 79.3 -0.9 123 211-351 28-153 (198)
148 1ds9_A Outer arm dynein; leuci 98.2 3.9E-08 1.3E-12 82.2 -4.3 99 264-370 48-150 (198)
149 4h09_A Hypothetical leucine ri 98.2 0.00073 2.5E-08 62.0 23.3 284 30-355 45-349 (379)
150 4h09_A Hypothetical leucine ri 98.1 0.003 1E-07 57.9 25.3 277 50-367 42-340 (379)
151 2ifg_A High affinity nerve gro 98.0 2.1E-05 7.1E-10 71.5 10.1 79 264-346 31-112 (347)
152 2ra8_A Uncharacterized protein 98.0 1.1E-05 3.7E-10 73.7 7.5 63 229-298 250-317 (362)
153 2ifg_A High affinity nerve gro 98.0 2.9E-05 1E-09 70.5 10.3 100 9-123 11-113 (347)
154 2ra8_A Uncharacterized protein 97.9 9.5E-06 3.2E-10 74.1 5.0 61 263-325 251-320 (362)
155 3un9_A NLR family member X1; l 97.8 1.6E-06 5.5E-11 79.7 -0.9 12 135-146 72-83 (372)
156 3un9_A NLR family member X1; l 97.8 2.4E-06 8.2E-11 78.5 -0.5 83 264-352 155-253 (372)
157 1io0_A Tropomodulin; LRR prote 97.3 6.2E-05 2.1E-09 61.8 1.4 66 227-297 32-102 (185)
158 1io0_A Tropomodulin; LRR prote 96.7 0.00096 3.3E-08 54.5 3.2 88 227-321 61-161 (185)
159 3rw6_A Nuclear RNA export fact 96.6 0.00052 1.8E-08 59.5 1.0 34 30-64 169-206 (267)
160 3rw6_A Nuclear RNA export fact 95.4 0.015 5.3E-07 50.2 5.0 58 263-322 169-231 (267)
161 1pgv_A TMD-1, tropomodulin TMD 94.0 0.023 8E-07 46.4 2.2 111 228-346 38-166 (197)
162 3rfe_A Platelet glycoprotein I 89.9 0.58 2E-05 35.2 5.6 51 10-65 12-66 (130)
163 3rfe_A Platelet glycoprotein I 89.8 0.48 1.6E-05 35.7 5.1 51 292-347 12-65 (130)
164 1pgv_A TMD-1, tropomodulin TMD 87.1 0.74 2.5E-05 37.5 4.8 110 256-369 33-166 (197)
165 2lz0_A Uncharacterized protein 30.8 73 0.0025 22.2 4.5 18 222-239 34-51 (100)
No 1
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1.2e-25 Score=223.07 Aligned_cols=332 Identities=18% Similarity=0.207 Sum_probs=160.4
Q ss_pred CCCccC--CccCCCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCCCCceE--eCccccCCCcccCCCCcceeeccccC
Q 043667 21 FPTWFG--DSSFSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKR--LGSEFYGKGAAIPFPRLETLRFDAML 95 (387)
Q Consensus 21 ~p~~~~--~~~l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~~~~L~~L~l~~~~ 95 (387)
+|..++ . +++|++|++++|...+.+|. ++++++|++|+++++..+.. +|..+..-.....+++|++|++.++.
T Consensus 239 ip~~l~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 239 KTEDLKWDN--LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp TTSCCCGGG--CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred Cchhhhhcc--cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 455444 3 55555555555443444442 44555555555555521321 22221000000112455555555432
Q ss_pred CccccccCcCCC--CccCCCCcceEeeccCcccccccCC--CCCCccEEEeccCc--cccccccCCCC-cceEEEcCccc
Q 043667 96 GWEDWIPLRSGQ--GVEGFPKLRELHILRCSKLQGTFPE--HLPALEMLVIEACK--ELSVSVSSLPA-LCKLKIGGCKK 168 (387)
Q Consensus 96 ~l~~~~~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~~~--~~~~L~~L~l~~~~--~l~~~~~~~~~-L~~L~i~~~~~ 168 (387)
+... + . .+..+++|+.|+++++ .+.+.+|. .+++|+.|+++++. .++..+..+++ |++|+++++..
T Consensus 317 -l~~i-p----~~~~l~~l~~L~~L~L~~N-~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 317 -LKTF-P----VETSLQKMKKLGMLECLYN-QLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp -CSSC-C----CHHHHTTCTTCCEEECCSC-CCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCC
T ss_pred -CCcc-C----chhhhccCCCCCEEeCcCC-cCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcC
Confidence 1111 1 1 2334555555555554 23334441 13455555555543 22233444555 56666555543
Q ss_pred eeEecccccC--CCCcEEeccCCCCcccccCCCCC-------CCccccceeEEEcCCCCcccccccccccCCCccEEEec
Q 043667 169 VVWRSATDHL--GSQNSVVCRDTSNQVFLAGPLKP-------QLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTID 239 (387)
Q Consensus 169 ~~~~~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~-------~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 239 (387)
..++..+... ++|++|+++++.-....+.. .. .+++|++ +.++++. ++.+|..++..+++|++|+++
T Consensus 390 ~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~--L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSS--INLSNNQ-ISKFPKELFSTGSPLSSINLM 465 (636)
T ss_dssp SSCCSCCCTTCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEE--EECCSSC-CCSCCTHHHHTTCCCSEEECC
T ss_pred cccchhhhhcccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCE--EECcCCc-cCcCCHHHHccCCCCCEEECC
Confidence 3333333332 25566666554332222211 11 3345555 6665543 335555545556667777776
Q ss_pred CCCCcccchhhHHHHH---HhhhhhccCCccEEEeccCCCCCCcccccC--CCCCccEEEecCCCCceecCCCCcC-CCc
Q 043667 240 WCPKLQSLVAEEEKDQ---QQQLCELSCRLEYLRLRYCKGLVKLPQSSL--SLSSLREIDIYDCSSLVSFPEVALP-SKL 313 (387)
Q Consensus 240 ~~~~l~~~~~~~~~~~---~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~-~~L 313 (387)
++ .+..++...+... +..+ ++|++|+++++ .++.+|..+. .+++|+.|++++ +.++.+|..... ++|
T Consensus 466 ~N-~l~~i~~~~~~~~~~~~~~l----~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~~l~~L 538 (636)
T 4eco_A 466 GN-MLTEIPKNSLKDENENFKNT----YLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSY-NSFSKFPTQPLNSSTL 538 (636)
T ss_dssp SS-CCSBCCSSSSEETTEECTTG----GGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCS-SCCSSCCCGGGGCSSC
T ss_pred CC-CCCCcCHHHhcccccccccc----CCccEEECcCC-cCCccChhhhhccCCCcCEEECCC-CCCCCcChhhhcCCCC
Confidence 64 3334443210000 0011 26777777764 3556666665 677777777776 355555533222 677
Q ss_pred eEEEecc------CCCCCccccccccCCCCCcceEecccCcccccccCCCCCCCccEEeecCCccccccc
Q 043667 314 KKIEIRK------CDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTLT 377 (387)
Q Consensus 314 ~~L~l~~------c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~ 377 (387)
++|++++ +...+.+|..+..+++ |++|++++| +++.+|.. ..++|++|++++|+ ++++.
T Consensus 539 ~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~--L~~L~Ls~N-~l~~ip~~-~~~~L~~L~Ls~N~-l~~~~ 603 (636)
T 4eco_A 539 KGFGIRNQRDAQGNRTLREWPEGITLCPS--LTQLQIGSN-DIRKVNEK-ITPNISVLDIKDNP-NISID 603 (636)
T ss_dssp CEEECCSCBCTTCCBCCCCCCTTGGGCSS--CCEEECCSS-CCCBCCSC-CCTTCCEEECCSCT-TCEEE
T ss_pred CEEECCCCcccccCcccccChHHHhcCCC--CCEEECCCC-cCCccCHh-HhCcCCEEECcCCC-Ccccc
Confidence 7777743 3334556666666666 777777775 55666654 33677777777754 44443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=1.8e-25 Score=226.56 Aligned_cols=64 Identities=17% Similarity=0.147 Sum_probs=31.8
Q ss_pred CCceEEEeccCCCCCccccccccCCCCCcceEecccCcccc-cccCC-CCCCCccEEeecCCccccccc
Q 043667 311 SKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLT-YIAGV-QLPPSLKRLDIWNCDNIRTLT 377 (387)
Q Consensus 311 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~-~~~~~L~~L~l~~C~~l~~l~ 377 (387)
++|+.|+++++.--..+|..+..++. |++|+++++ +++ .+|.. ..+++|++|++++++--..+|
T Consensus 656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~--L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 656 PYLFILNLGHNDISGSIPDEVGDLRG--LNILDLSSN-KLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTT--CCEEECCSS-CCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred ccCCEEeCcCCccCCCCChHHhCCCC--CCEEECCCC-cccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 45555555554333345555555555 555555554 333 33333 344556666666644444444
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=3e-25 Score=220.18 Aligned_cols=319 Identities=15% Similarity=0.148 Sum_probs=219.2
Q ss_pred CCCccEEEeecCCCCCC------------------CCC-cC--CcCCCcEEEecCCCCceEeCccccCCCcccCCCCcce
Q 043667 30 FSNLVTLKFEYCGMCPT------------------LPS-VG--QLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLET 88 (387)
Q Consensus 30 l~~L~~L~l~~c~~~~~------------------l~~-~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~ 88 (387)
+++|++|+++++ .++. +|. ++ ++++|++|++++|.....+|.. +..+++|++
T Consensus 205 l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~------l~~l~~L~~ 277 (636)
T 4eco_A 205 LTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF------LKALPEMQL 277 (636)
T ss_dssp CTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT------TTTCSSCCE
T ss_pred ccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH------HhcCCCCCE
Confidence 788889999886 4666 775 67 8899999999888555555544 356888999
Q ss_pred eeccccCCccc-cccCcCCCCccC------CCCcceEeeccCcccccccCC-----CCCCccEEEeccCc---ccccccc
Q 043667 89 LRFDAMLGWED-WIPLRSGQGVEG------FPKLRELHILRCSKLQGTFPE-----HLPALEMLVIEACK---ELSVSVS 153 (387)
Q Consensus 89 L~l~~~~~l~~-~~~~~~~~~i~~------~~~L~~L~l~~~~~l~~~~~~-----~~~~L~~L~l~~~~---~l~~~~~ 153 (387)
|+++++..+.+ ..+ ..++. +++|++|+++++ .+. .+|. .+++|+.|+++++. .++ .+.
T Consensus 278 L~Ls~n~~l~~~~lp----~~~~~L~~~~~l~~L~~L~L~~n-~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~ 350 (636)
T 4eco_A 278 INVACNRGISGEQLK----DDWQALADAPVGEKIQIIYIGYN-NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350 (636)
T ss_dssp EECTTCTTSCHHHHH----HHHHHHHHSGGGGTCCEEECCSS-CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred EECcCCCCCccccch----HHHHhhhccccCCCCCEEECCCC-cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence 99888763443 222 22222 388899999877 444 5665 46788888888775 333 666
Q ss_pred CCCCcceEEEcCccceeEecccccCCC-CcEEeccCCCCcccccCCC-CCCCccccceeEEEcCCCCcccccccccc---
Q 043667 154 SLPALCKLKIGGCKKVVWRSATDHLGS-QNSVVCRDTSNQVFLAGPL-KPQLPKLEELILSTKEQTYIWKSHDGLLQ--- 228 (387)
Q Consensus 154 ~~~~L~~L~i~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~-~~~l~~L~~l~L~l~~~~~~~~~~~~~l~--- 228 (387)
.+++|+.|+++++....++..+..+++ |++|+++++. +..++... ...+++|++ +.++++......|.. +.
T Consensus 351 ~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~--L~Ls~N~l~~~~p~~-l~~~~ 426 (636)
T 4eco_A 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSA--IDFSYNEIGSVDGKN-FDPLD 426 (636)
T ss_dssp EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEE--EECCSSCTTTTTTCS-SCTTC
T ss_pred CCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCE--EECcCCcCCCcchhh-hcccc
Confidence 778888898888766666666777788 9999988775 33554432 223447777 888877654444433 33
Q ss_pred ----cCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCC--------CCCccEEEec
Q 043667 229 ----DICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLS--------LSSLREIDIY 296 (387)
Q Consensus 229 ----~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~--------~~~L~~L~l~ 296 (387)
.+++|++|+++++ .+..++.. .+..+ ++|++|+++++. ++.+|..... +++|+.|+++
T Consensus 427 ~~~~~~~~L~~L~Ls~N-~l~~lp~~----~~~~l----~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 427 PTPFKGINVSSINLSNN-QISKFPKE----LFSTG----SPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp SSCCCCCCEEEEECCSS-CCCSCCTH----HHHTT----CCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECC
T ss_pred cccccCCCCCEEECcCC-ccCcCCHH----HHccC----CCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECc
Confidence 5668899999885 45566553 24444 889999998854 6677764332 2288999998
Q ss_pred CCCCceecCCCCc---CCCceEEEeccCCCCCccccccccCCCCCcceEecccC------cccccccCC-CCCCCccEEe
Q 043667 297 DCSSLVSFPEVAL---PSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERC------RSLTYIAGV-QLPPSLKRLD 366 (387)
Q Consensus 297 ~c~~l~~~~~~~~---~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c------~~l~~~~~~-~~~~~L~~L~ 366 (387)
+ +.++.++.... .++|++|+++++. ++.+|..+..+++ |++|+++++ .-...+|.. ..+++|++|+
T Consensus 497 ~-N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~--L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~ 572 (636)
T 4eco_A 497 F-NKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSST--LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572 (636)
T ss_dssp S-SCCCBCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSS--CCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred C-CcCCccChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCC--CCEEECCCCcccccCcccccChHHHhcCCCCCEEE
Confidence 8 46777776543 3889999998854 6678887777777 999998653 223445544 5578899999
Q ss_pred ecCCccccccccccc
Q 043667 367 IWNCDNIRTLTVEEG 381 (387)
Q Consensus 367 l~~C~~l~~l~~~~~ 381 (387)
+++|. ++.+|..+.
T Consensus 573 Ls~N~-l~~ip~~~~ 586 (636)
T 4eco_A 573 IGSND-IRKVNEKIT 586 (636)
T ss_dssp CCSSC-CCBCCSCCC
T ss_pred CCCCc-CCccCHhHh
Confidence 99855 588886654
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=3.2e-24 Score=212.15 Aligned_cols=154 Identities=17% Similarity=0.144 Sum_probs=77.9
Q ss_pred CCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCC-
Q 043667 201 PQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK- 279 (387)
Q Consensus 201 ~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~- 279 (387)
..+++|++ +.+.++......+...++.+++|++|++++|......+. .+..+ ++|++|++++|. ++.
T Consensus 396 ~~l~~L~~--L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~l----~~L~~L~l~~n~-l~~~ 463 (606)
T 3vq2_A 396 MGLEELQH--LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG-----IFLGL----TSLNTLKMAGNS-FKDN 463 (606)
T ss_dssp TTCTTCCE--EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT-----TTTTC----TTCCEEECTTCE-EGGG
T ss_pred cCCCCCCe--eECCCCccCCccChhhhhccccCCEEECcCCCCCccchh-----hhcCC----CCCCEEECCCCc-CCCc
Confidence 34455555 555544332222222344555666666665433222221 23333 666666666543 322
Q ss_pred -cccccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCcc-ccccccCCCCCcceEecccCcccccccC
Q 043667 280 -LPQSSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSL-PEAWMCDTNSSLETLKIERCRSLTYIAG 355 (387)
Q Consensus 280 -~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l-~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 355 (387)
+|..+..+++|+.|++++| .++.++...+. ++|++|++++|. +..+ |..+..+++ |++|++++| +++.+|.
T Consensus 464 ~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~--L~~L~l~~N-~l~~~p~ 538 (606)
T 3vq2_A 464 TLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNN-LLFLDSSHYNQLYS--LSTLDCSFN-RIETSKG 538 (606)
T ss_dssp EECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSCEEGGGTTTCTT--CCEEECTTS-CCCCEES
T ss_pred chHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCCc-CCCcCHHHccCCCc--CCEEECCCC-cCcccCH
Confidence 4445556666666666663 44444433222 566666666654 3333 455544555 666666664 4666665
Q ss_pred C-CCC-CCccEEeecCCc
Q 043667 356 V-QLP-PSLKRLDIWNCD 371 (387)
Q Consensus 356 ~-~~~-~~L~~L~l~~C~ 371 (387)
. ..+ ++|++|+++++|
T Consensus 539 ~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 539 ILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp CGGGSCTTCCEEECCSCC
T ss_pred hHhhhcccCcEEEccCCC
Confidence 4 222 346666666644
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=5.9e-25 Score=222.81 Aligned_cols=323 Identities=16% Similarity=0.099 Sum_probs=191.3
Q ss_pred CCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCc
Q 043667 30 FSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGV 109 (387)
Q Consensus 30 l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i 109 (387)
+++|++|++++|...+.+|.++.+++|++|++.++.-...++.. +..+++|++|+++++.-...... .
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~------l~~l~~L~~L~Ls~n~l~~~~~~------~ 266 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA------ISTCTELKLLNISSNQFVGPIPP------L 266 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH------TTTCSSCCEEECCSSCCEESCCC------C
T ss_pred CCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH------HhcCCCCCEEECCCCcccCccCc------c
Confidence 66677777766644444555667777777777766321122222 23466677777666532211110 1
Q ss_pred cCCCCcceEeeccCcccccccCCC----CCCccEEEeccCc---cccccccCCCCcceEEEcCccce-eEecc-cccCCC
Q 043667 110 EGFPKLRELHILRCSKLQGTFPEH----LPALEMLVIEACK---ELSVSVSSLPALCKLKIGGCKKV-VWRSA-TDHLGS 180 (387)
Q Consensus 110 ~~~~~L~~L~l~~~~~l~~~~~~~----~~~L~~L~l~~~~---~l~~~~~~~~~L~~L~i~~~~~~-~~~~~-~~~~~~ 180 (387)
.+++|++|+++++ .+.+.+|.. +++|+.|+++++. .++..++.+++|++|+++++... .++.. +..+++
T Consensus 267 -~l~~L~~L~L~~n-~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~ 344 (768)
T 3rgz_A 267 -PLKSLQYLSLAEN-KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344 (768)
T ss_dssp -CCTTCCEEECCSS-EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTT
T ss_pred -ccCCCCEEECcCC-ccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCC
Confidence 3556666666555 233334432 2556666665554 22234555555555555555433 12221 344555
Q ss_pred CcEEeccCCC-------------------------CcccccCCC-CCCCccccceeEEEcCCCCcccccccccccCCCcc
Q 043667 181 QNSVVCRDTS-------------------------NQVFLAGPL-KPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLK 234 (387)
Q Consensus 181 L~~L~l~~~~-------------------------~l~~~~~~~-~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~ 234 (387)
|++|+++++. -....+... ...+++|++ +.+.++.....+|.. ++.+++|+
T Consensus 345 L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~--L~L~~n~l~~~~p~~-l~~l~~L~ 421 (768)
T 3rgz_A 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE--LYLQNNGFTGKIPPT-LSNCSELV 421 (768)
T ss_dssp CCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE--EECCSSEEEEECCGG-GGGCTTCC
T ss_pred CCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccE--EECCCCccccccCHH-HhcCCCCC
Confidence 5555555442 111111111 111456666 777666544445544 66788888
Q ss_pred EEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCce-ecCCC-CcCCC
Q 043667 235 KLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLV-SFPEV-ALPSK 312 (387)
Q Consensus 235 ~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~-~~~~~ 312 (387)
+|+++++.-.+.++. .+..+ ++|+.|++++|.....+|..+..+++|+.|++++| .++ .++.. .-.++
T Consensus 422 ~L~Ls~N~l~~~~p~-----~l~~l----~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~ 491 (768)
T 3rgz_A 422 SLHLSFNYLSGTIPS-----SLGSL----SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN-DLTGEIPSGLSNCTN 491 (768)
T ss_dssp EEECCSSEEESCCCG-----GGGGC----TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTT
T ss_pred EEECcCCcccCcccH-----HHhcC----CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC-cccCcCCHHHhcCCC
Confidence 888888643334433 35555 88999999887644567777888889999999885 444 34422 12288
Q ss_pred ceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCC-CCCCCccEEeecCCccccccccccc
Q 043667 313 LKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGV-QLPPSLKRLDIWNCDNIRTLTVEEG 381 (387)
Q Consensus 313 L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~C~~l~~l~~~~~ 381 (387)
|++|++++|.....+|..+..+++ |++|++++|+-...+|.. ..+++|++|++++|+--..+|..++
T Consensus 492 L~~L~L~~N~l~~~~p~~~~~l~~--L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 492 LNWISLSNNRLTGEIPKWIGRLEN--LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTT--CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred CCEEEccCCccCCcCChHHhcCCC--CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence 999999987755578888777777 999999997433356655 6678899999999876668886654
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=1.6e-24 Score=219.46 Aligned_cols=351 Identities=16% Similarity=0.168 Sum_probs=258.0
Q ss_pred CCCCCCCcEEEEcCcCCCC------------------CCCccC--CccCCCccEEEeecCCCCCCCCC-cCCcCCCcEEE
Q 043667 2 LEPHKNLEQFCISGYRGAK------------------FPTWFG--DSSFSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLA 60 (387)
Q Consensus 2 ~~~~~~L~~L~l~~~~~~~------------------~p~~~~--~~~l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~ 60 (387)
+...++|++|+++++.... +|..++ . +++|++|++++|...+.+|. ++++++|+.|+
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~--L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN--LKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG--CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhcc--CCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence 4467899999999999888 899887 6 99999999999877788885 89999999999
Q ss_pred ecCCCCceE--eCccccCCC-cccCCCCcceeeccccCCccccccCcCCC--CccCCCCcceEeeccCcccccccCC--C
Q 043667 61 VCGMTSVKR--LGSEFYGKG-AAIPFPRLETLRFDAMLGWEDWIPLRSGQ--GVEGFPKLRELHILRCSKLQGTFPE--H 133 (387)
Q Consensus 61 l~~~~~l~~--~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~~~--~ 133 (387)
++++..+.. +|..+..-. ....+++|++|++.++. +... + . .+..+++|+.|+++++ .+. .+|. .
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~i-p----~~~~l~~L~~L~~L~Ls~N-~l~-~lp~~~~ 593 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEF-P----ASASLQKMVKLGLLDCVHN-KVR-HLEAFGT 593 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBC-C----CHHHHTTCTTCCEEECTTS-CCC-BCCCCCT
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCcc-C----ChhhhhcCCCCCEEECCCC-Ccc-cchhhcC
Confidence 999953553 444321100 12456799999999854 3322 1 3 3557899999999987 444 5662 3
Q ss_pred CCCccEEEeccCc--cccccccCCCC-cceEEEcCccceeEecccccCC--CCcEEeccCCCCcccccCCC----CCCCc
Q 043667 134 LPALEMLVIEACK--ELSVSVSSLPA-LCKLKIGGCKKVVWRSATDHLG--SQNSVVCRDTSNQVFLAGPL----KPQLP 204 (387)
Q Consensus 134 ~~~L~~L~l~~~~--~l~~~~~~~~~-L~~L~i~~~~~~~~~~~~~~~~--~L~~L~l~~~~~l~~~~~~~----~~~l~ 204 (387)
+++|+.|+++++. .++..+..+++ |+.|+++++....++..+...+ +|+.|+++++.-...++... .-.++
T Consensus 594 L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp TSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred CCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 6789999998876 34456778888 9999999987555665555544 49999999875433322221 11344
Q ss_pred cccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHH---HhhhhhccCCccEEEeccCCCCCCcc
Q 043667 205 KLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQ---QQQLCELSCRLEYLRLRYCKGLVKLP 281 (387)
Q Consensus 205 ~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~---~~~l~~~~~~L~~L~l~~c~~l~~~~ 281 (387)
+|+. |.++++. +..+|..++..+++|+.|+++++ .+..++...+... +..+ ++|+.|++++| .++.+|
T Consensus 674 ~L~~--L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl----~~L~~L~Ls~N-~L~~lp 744 (876)
T 4ecn_A 674 NAST--VTLSYNE-IQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNT----YLLTTIDLRFN-KLTSLS 744 (876)
T ss_dssp CEEE--EECCSSC-CCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTG----GGCCEEECCSS-CCCCCC
T ss_pred CcCE--EEccCCc-CCccCHHHHccCCCCCEEECCCC-cCCccChHHhcccccccccc----CCccEEECCCC-CCccch
Confidence 7777 8888765 55788776678899999999986 5566665321100 1112 48999999986 577899
Q ss_pred cccC--CCCCccEEEecCCCCceecCCCCcC-CCceEEEecc------CCCCCccccccccCCCCCcceEecccCccccc
Q 043667 282 QSSL--SLSSLREIDIYDCSSLVSFPEVALP-SKLKKIEIRK------CDALKSLPEAWMCDTNSSLETLKIERCRSLTY 352 (387)
Q Consensus 282 ~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~-~~L~~L~l~~------c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~ 352 (387)
..+. .+++|+.|++++ +.++.+|..... ++|+.|++++ +.....+|..+..+++ |++|++++| .++.
T Consensus 745 ~~l~~~~l~~L~~L~Ls~-N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~--L~~L~Ls~N-~L~~ 820 (876)
T 4ecn_A 745 DDFRATTLPYLSNMDVSY-NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS--LIQLQIGSN-DIRK 820 (876)
T ss_dssp GGGSTTTCTTCCEEECCS-SCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSS--CCEEECCSS-CCCB
T ss_pred HHhhhccCCCcCEEEeCC-CCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCC--CCEEECCCC-CCCc
Confidence 8886 899999999998 477777643322 8999999976 4445678888877888 999999997 6788
Q ss_pred ccCCCCCCCccEEeecCCccccccc
Q 043667 353 IAGVQLPPSLKRLDIWNCDNIRTLT 377 (387)
Q Consensus 353 ~~~~~~~~~L~~L~l~~C~~l~~l~ 377 (387)
+|.. ..++|+.|++++|+ +.++.
T Consensus 821 Ip~~-l~~~L~~LdLs~N~-l~~i~ 843 (876)
T 4ecn_A 821 VDEK-LTPQLYILDIADNP-NISID 843 (876)
T ss_dssp CCSC-CCSSSCEEECCSCT-TCEEE
T ss_pred cCHh-hcCCCCEEECCCCC-CCccC
Confidence 8875 45799999999976 55554
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=6.7e-24 Score=209.83 Aligned_cols=65 Identities=15% Similarity=0.072 Sum_probs=40.7
Q ss_pred CCCCCCCcEEEEcCcCCCCC-CCccCCccCCCccEEEeecCCCCCCCC--CcCCcCCCcEEEecCCCCceEe
Q 043667 2 LEPHKNLEQFCISGYRGAKF-PTWFGDSSFSNLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRL 70 (387)
Q Consensus 2 ~~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~l~--~~~~l~~L~~L~l~~~~~l~~~ 70 (387)
|...++|++|+++++.+..+ |..++. +++|++|++++| .+..++ .++.+++|++|++.++ .+..+
T Consensus 53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~i~~l 120 (606)
T 3t6q_A 53 FSRLINLTFLDLTRCQIYWIHEDTFQS--QHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQT-GISSI 120 (606)
T ss_dssp STTCTTCSEEECTTCCCCEECTTTTTT--CTTCCEEECTTC-CCSEECTTTTSSCTTCCEEECTTS-CCSCG
T ss_pred hccCccceEEECCCCccceeChhhccC--ccccCeeeCCCC-cccccChhhhcccccccEeecccc-CcccC
Confidence 45567777777777766554 555655 777777777765 444443 2666777777777666 34443
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=4.4e-23 Score=203.92 Aligned_cols=151 Identities=15% Similarity=0.042 Sum_probs=105.8
Q ss_pred CCCCcEEEEcCcCCCCC-CCccCCccCCCccEEEeecCCCCCCCC--CcCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667 5 HKNLEQFCISGYRGAKF-PTWFGDSSFSNLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI 81 (387)
Q Consensus 5 ~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~l~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 81 (387)
++++++|+++++.+..+ |..++. +++|++|++++| .+..++ .++.+++|++|+++++ .+..+.... +.
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-----~~ 102 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSR--LINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETA-----LS 102 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTT--CTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCSEECTTT-----TS
T ss_pred CCcCcEEEccCCccCcCChhHhcc--CccceEEECCCC-ccceeChhhccCccccCeeeCCCC-cccccChhh-----hc
Confidence 46899999999998887 667776 999999999997 555553 3899999999999999 555554433 35
Q ss_pred CCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCC--CCCCccEEEeccCccc---cccccCCC
Q 043667 82 PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPE--HLPALEMLVIEACKEL---SVSVSSLP 156 (387)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~--~~~~L~~L~l~~~~~l---~~~~~~~~ 156 (387)
.+++|++|++.++. +..... ..+..+++|++|+++++.......|. .+++|+.|+++++... ...++.++
T Consensus 103 ~l~~L~~L~L~~n~-i~~l~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 177 (606)
T 3t6q_A 103 GPKALKHLFFIQTG-ISSIDF----IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177 (606)
T ss_dssp SCTTCCEEECTTSC-CSCGGG----SCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT
T ss_pred ccccccEeeccccC-cccCCc----chhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhc
Confidence 68999999999754 333322 34456889999999887332212232 2678888888876532 13456667
Q ss_pred Ccc--eEEEcCccce
Q 043667 157 ALC--KLKIGGCKKV 169 (387)
Q Consensus 157 ~L~--~L~i~~~~~~ 169 (387)
+|+ .|+++++...
T Consensus 178 ~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 178 QATNLSLNLNGNDIA 192 (606)
T ss_dssp TCCSEEEECTTCCCC
T ss_pred ccceeEEecCCCccC
Confidence 777 5666665433
No 9
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=4.3e-23 Score=197.46 Aligned_cols=324 Identities=13% Similarity=0.139 Sum_probs=159.2
Q ss_pred CCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCC
Q 043667 6 KNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPR 85 (387)
Q Consensus 6 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 85 (387)
++++.|++.++....+|. +.. +++|++|++++| .++.++.++.+++|++|++.++ .+..++. ...+++
T Consensus 46 ~~l~~L~l~~~~i~~l~~-~~~--l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~-------~~~l~~ 113 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDG-VEY--LNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNN-QIADITP-------LANLTN 113 (466)
T ss_dssp HTCCEEECCSSCCCCCTT-GGG--CTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCGG-------GTTCTT
T ss_pred ccccEEecCCCCCccCcc-hhh--hcCCCEEECCCC-ccCCchhhhccccCCEEECCCC-ccccChh-------hcCCCC
Confidence 456666666666655554 332 666666666664 4555555666666666666666 3333332 234566
Q ss_pred cceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccC--CCCCCccEEE---------------------e
Q 043667 86 LETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFP--EHLPALEMLV---------------------I 142 (387)
Q Consensus 86 L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~--~~~~~L~~L~---------------------l 142 (387)
|++|++.++. +... ..+..+++|++|+++++. +. .++ ..+++|+.|. +
T Consensus 114 L~~L~L~~n~-l~~~------~~~~~l~~L~~L~l~~n~-l~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l 184 (466)
T 1o6v_A 114 LTGLTLFNNQ-ITDI------DPLKNLTNLNRLELSSNT-IS-DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 184 (466)
T ss_dssp CCEEECCSSC-CCCC------GGGTTCTTCSEEEEEEEE-EC-CCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEEC
T ss_pred CCEEECCCCC-CCCC------hHHcCCCCCCEEECCCCc-cC-CChhhccCCcccEeecCCcccCchhhccCCCCCEEEC
Confidence 6666666542 2222 112345566666665542 21 111 2244444444 4
Q ss_pred ccCcccc-ccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCccc
Q 043667 143 EACKELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWK 221 (387)
Q Consensus 143 ~~~~~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~ 221 (387)
+++..-. ..+..+++|++|+++++....... +..+++|++|+++++. +..++. ...+++|++ +.++++.. ..
T Consensus 185 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~--L~l~~n~l-~~ 257 (466)
T 1o6v_A 185 SSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQ-LKDIGT--LASLTNLTD--LDLANNQI-SN 257 (466)
T ss_dssp CSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSE--EECCSSCC-CC
T ss_pred cCCcCCCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCC-cccchh--hhcCCCCCE--EECCCCcc-cc
Confidence 4443111 223344445555544443222211 3334455555554432 111111 223444444 55554432 22
Q ss_pred ccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCc
Q 043667 222 SHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSL 301 (387)
Q Consensus 222 ~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l 301 (387)
++. +..+++|++|+++++ .+..+++ +..+ ++|++|++++|. ++.+++ +..+++|+.|++++| .+
T Consensus 258 ~~~--~~~l~~L~~L~l~~n-~l~~~~~------~~~l----~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n-~l 321 (466)
T 1o6v_A 258 LAP--LSGLTKLTELKLGAN-QISNISP------LAGL----TALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFN-NI 321 (466)
T ss_dssp CGG--GTTCTTCSEEECCSS-CCCCCGG------GTTC----TTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSS-CC
T ss_pred chh--hhcCCCCCEEECCCC-ccCcccc------ccCC----CccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCC-cC
Confidence 221 344555666666553 2222221 2222 666666666543 444443 456666666666664 44
Q ss_pred eecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCCCCCCCccEEeecCCccccccccc
Q 043667 302 VSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTLTVE 379 (387)
Q Consensus 302 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~ 379 (387)
+.++.....++|++|++++| .+..++ .+..+++ |+.|++++| .++.++....+++|++|++++|+ ++.+|..
T Consensus 322 ~~~~~~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~--L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-~~~~p~~ 393 (466)
T 1o6v_A 322 SDISPVSSLTKLQRLFFYNN-KVSDVS-SLANLTN--INWLSAGHN-QISDLTPLANLTRITQLGLNDQA-WTNAPVN 393 (466)
T ss_dssp SCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCTT--CCEEECCSS-CCCBCGGGTTCTTCCEEECCCEE-EECCCBC
T ss_pred CCchhhccCccCCEeECCCC-ccCCch-hhccCCC--CCEEeCCCC-ccCccchhhcCCCCCEEeccCCc-ccCCchh
Confidence 44433223366777777665 355553 3444555 777777775 45544444455677777777743 5555544
No 10
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=2e-23 Score=199.83 Aligned_cols=311 Identities=17% Similarity=0.206 Sum_probs=215.2
Q ss_pred CCCCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccC
Q 043667 3 EPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIP 82 (387)
Q Consensus 3 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 82 (387)
..+++|++|+++++....+|. +.. +++|++|++++| .+..++.++.+++|++|+++++ .++.++. +..
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~-~~~--l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~-------~~~ 132 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITP-LKN--LTKLVDILMNNN-QIADITPLANLTNLTGLTLFNN-QITDIDP-------LKN 132 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTT--CTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCGG-------GTT
T ss_pred hhhcCCCEEECCCCccCCchh-hhc--cccCCEEECCCC-ccccChhhcCCCCCCEEECCCC-CCCCChH-------HcC
Confidence 456788888888888777765 554 788888888775 5566666777888888888777 4544432 234
Q ss_pred CCCcceeeccccCCccccccC---------------cCCCCccCCCCcceEeeccCccccc-ccCCCCCCccEEEeccCc
Q 043667 83 FPRLETLRFDAMLGWEDWIPL---------------RSGQGVEGFPKLRELHILRCSKLQG-TFPEHLPALEMLVIEACK 146 (387)
Q Consensus 83 ~~~L~~L~l~~~~~l~~~~~~---------------~~~~~i~~~~~L~~L~l~~~~~l~~-~~~~~~~~L~~L~l~~~~ 146 (387)
+++|++|+++++. +.....+ .....+..+++|+.|+++++. +.+ .....+++|+.|+++++.
T Consensus 133 l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~ 210 (466)
T 1o6v_A 133 LTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQ 210 (466)
T ss_dssp CTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC
T ss_pred CCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCChhhccCCCCCEEEecCCc
Confidence 6666666665432 1111000 000123357888999998774 331 112357899999999886
Q ss_pred ccc-ccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCccccccc
Q 043667 147 ELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDG 225 (387)
Q Consensus 147 ~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~ 225 (387)
... ..++.+++|+.|+++++....+ ..+..+++|++|+++++.-.. .+. ...+++|++ +.++++. +..++.
T Consensus 211 l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~--L~l~~n~-l~~~~~- 282 (466)
T 1o6v_A 211 ISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISN-LAP--LSGLTKLTE--LKLGANQ-ISNISP- 282 (466)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCSE--EECCSSC-CCCCGG-
T ss_pred ccccccccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCcccc-chh--hhcCCCCCE--EECCCCc-cCcccc-
Confidence 332 3467789999999998764443 456778999999999875332 222 456788888 9998765 444443
Q ss_pred ccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecC
Q 043667 226 LLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFP 305 (387)
Q Consensus 226 ~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 305 (387)
+..+++|++|+++++ .+..+++ +..+ ++|++|++++|. ++.+++ +..+++|+.|++++| .++.++
T Consensus 283 -~~~l~~L~~L~L~~n-~l~~~~~------~~~l----~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~ 347 (466)
T 1o6v_A 283 -LAGLTALTNLELNEN-QLEDISP------ISNL----KNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNN-KVSDVS 347 (466)
T ss_dssp -GTTCTTCSEEECCSS-CCSCCGG------GGGC----TTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSS-CCCCCG
T ss_pred -ccCCCccCeEEcCCC-cccCchh------hcCC----CCCCEEECcCCc-CCCchh-hccCccCCEeECCCC-ccCCch
Confidence 567999999999996 4555443 3444 999999999974 666665 678999999999985 777776
Q ss_pred CCCcCCCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccC
Q 043667 306 EVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAG 355 (387)
Q Consensus 306 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 355 (387)
.....++|+.|++++|. +.+++. +..+++ |++|++++| .++.+|.
T Consensus 348 ~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~--L~~L~l~~n-~~~~~p~ 392 (466)
T 1o6v_A 348 SLANLTNINWLSAGHNQ-ISDLTP-LANLTR--ITQLGLNDQ-AWTNAPV 392 (466)
T ss_dssp GGTTCTTCCEEECCSSC-CCBCGG-GTTCTT--CCEEECCCE-EEECCCB
T ss_pred hhccCCCCCEEeCCCCc-cCccch-hhcCCC--CCEEeccCC-cccCCch
Confidence 44444899999999875 665554 556777 999999996 6666554
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=4.4e-24 Score=208.61 Aligned_cols=105 Identities=17% Similarity=0.235 Sum_probs=66.7
Q ss_pred CCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcceEe
Q 043667 264 CRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLK 343 (387)
Q Consensus 264 ~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~ 343 (387)
++|++|++++| .++.+|..+..+++|+.|+++++ .++.++.. .+++|++|++++| .++.++.. ++. |++|+
T Consensus 387 ~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N-~l~~l~~~-~~~~L~~L~Ls~N-~l~~~~~~---l~~--L~~L~ 457 (549)
T 2z81_A 387 KNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSST-GIRVVKTC-IPQTLEVLDVSNN-NLDSFSLF---LPR--LQELY 457 (549)
T ss_dssp TTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTS-CCSCCCTT-SCTTCSEEECCSS-CCSCCCCC---CTT--CCEEE
T ss_pred CCCCEEECCCC-CCccCChhhcccccccEEECCCC-Ccccccch-hcCCceEEECCCC-Chhhhccc---CCh--hcEEE
Confidence 67777777765 46666766666777777777763 45555432 2356777777664 35554422 445 77788
Q ss_pred cccCcccccccCCCCCCCccEEeecCCccccccccc
Q 043667 344 IERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTLTVE 379 (387)
Q Consensus 344 l~~c~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~ 379 (387)
++++ +++.+|....+++|++|+++++ +++.+|.+
T Consensus 458 Ls~N-~l~~ip~~~~l~~L~~L~Ls~N-~l~~~~~~ 491 (549)
T 2z81_A 458 ISRN-KLKTLPDASLFPVLLVMKISRN-QLKSVPDG 491 (549)
T ss_dssp CCSS-CCSSCCCGGGCTTCCEEECCSS-CCCCCCTT
T ss_pred CCCC-ccCcCCCcccCccCCEEecCCC-ccCCcCHH
Confidence 8775 6777765555677888888774 56666644
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=8.5e-24 Score=214.14 Aligned_cols=327 Identities=15% Similarity=0.145 Sum_probs=241.7
Q ss_pred CCCccCCccCCCccEEEeecCCCCCC------------------CCC-cC--CcCCCcEEEecCCCCceEeCccccCCCc
Q 043667 21 FPTWFGDSSFSNLVTLKFEYCGMCPT------------------LPS-VG--QLPSLKHLAVCGMTSVKRLGSEFYGKGA 79 (387)
Q Consensus 21 ~p~~~~~~~l~~L~~L~l~~c~~~~~------------------l~~-~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 79 (387)
+|..++. +++|++|++++| .+.. +|. ++ ++++|++|++++|.....+|..
T Consensus 440 IP~~l~~--L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~------ 510 (876)
T 4ecn_A 440 ISKAIQR--LTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF------ 510 (876)
T ss_dssp ECGGGGG--CTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG------
T ss_pred hhHHHhc--CCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH------
Confidence 6777776 999999999997 5666 775 66 9999999999999666666654
Q ss_pred ccCCCCcceeeccccCCccc-cccCcCCC-------CccCCCCcceEeeccCcccccccCC-----CCCCccEEEeccCc
Q 043667 80 AIPFPRLETLRFDAMLGWED-WIPLRSGQ-------GVEGFPKLRELHILRCSKLQGTFPE-----HLPALEMLVIEACK 146 (387)
Q Consensus 80 ~~~~~~L~~L~l~~~~~l~~-~~~~~~~~-------~i~~~~~L~~L~l~~~~~l~~~~~~-----~~~~L~~L~l~~~~ 146 (387)
+..+++|++|+++++..+.. ..+ . ....+++|+.|+++++ .+. .+|. .+++|+.|+++++.
T Consensus 511 l~~L~~L~~L~Ls~N~~lsg~~iP----~~i~~L~~~~~~l~~L~~L~Ls~N-~L~-~ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 511 LYDLPELQSLNIACNRGISAAQLK----ADWTRLADDEDTGPKIQIFYMGYN-NLE-EFPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp GGGCSSCCEEECTTCTTSCHHHHH----HHHHHHHHCTTTTTTCCEEECCSS-CCC-BCCCHHHHTTCTTCCEEECTTSC
T ss_pred HhCCCCCCEEECcCCCCcccccch----HHHHhhhhcccccCCccEEEeeCC-cCC-ccCChhhhhcCCCCCEEECCCCC
Confidence 46789999999998763443 111 1 1124679999999987 455 6776 47899999999876
Q ss_pred --cccccccCCCCcceEEEcCccceeEecccccCCC-CcEEeccCCCCcccccCCC-CCCCccccceeEEEcCCCCcccc
Q 043667 147 --ELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGS-QNSVVCRDTSNQVFLAGPL-KPQLPKLEELILSTKEQTYIWKS 222 (387)
Q Consensus 147 --~l~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~-~~~l~~L~~l~L~l~~~~~~~~~ 222 (387)
.++ .++.+++|+.|+++++....++..+..+++ |++|+++++. +..++... ....++|+. +.++++.....+
T Consensus 585 l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~--L~Ls~N~l~g~i 660 (876)
T 4ecn_A 585 VRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGS--VDFSYNKIGSEG 660 (876)
T ss_dssp CCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEE--EECCSSCTTTTS
T ss_pred cccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCE--EECcCCcCCCcc
Confidence 343 678889999999999876667777778888 9999999876 44555432 122345888 999887654333
Q ss_pred ccc--ccc--cCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCC--------CCCc
Q 043667 223 HDG--LLQ--DICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLS--------LSSL 290 (387)
Q Consensus 223 ~~~--~l~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~--------~~~L 290 (387)
|.. .++ .+++|+.|+++++ .+..++.. .+..+ ++|+.|+++++ .++.+|..+.. +++|
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~----~~~~l----~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L 730 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYN-EIQKFPTE----LFATG----SPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLL 730 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSS-CCCSCCHH----HHHTT----CCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGC
T ss_pred ccchhhhccccCCCcCEEEccCC-cCCccCHH----HHccC----CCCCEEECCCC-cCCccChHHhccccccccccCCc
Confidence 211 012 3458999999985 55566653 24445 99999999986 57788875443 2389
Q ss_pred cEEEecCCCCceecCCCCc---CCCceEEEeccCCCCCccccccccCCCCCcceEecccC------cccccccCC-CCCC
Q 043667 291 REIDIYDCSSLVSFPEVAL---PSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERC------RSLTYIAGV-QLPP 360 (387)
Q Consensus 291 ~~L~l~~c~~l~~~~~~~~---~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c------~~l~~~~~~-~~~~ 360 (387)
+.|++++| .++.++.... .++|+.|++++| .+..+|..+..+++ |+.|+++++ .-...+|.. ..++
T Consensus 731 ~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~--L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 731 TTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQ--LKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp CEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTT--CCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred cEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCC--CCEEECCCCCCcccccccccChHHHhcCC
Confidence 99999995 7888886543 389999999986 47789988888888 999999873 223455544 5678
Q ss_pred CccEEeecCCccccccccccc
Q 043667 361 SLKRLDIWNCDNIRTLTVEEG 381 (387)
Q Consensus 361 ~L~~L~l~~C~~l~~l~~~~~ 381 (387)
+|++|++++|. ++.+|..++
T Consensus 807 ~L~~L~Ls~N~-L~~Ip~~l~ 826 (876)
T 4ecn_A 807 SLIQLQIGSND-IRKVDEKLT 826 (876)
T ss_dssp SCCEEECCSSC-CCBCCSCCC
T ss_pred CCCEEECCCCC-CCccCHhhc
Confidence 99999999965 599997654
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=4.4e-23 Score=189.76 Aligned_cols=300 Identities=16% Similarity=0.141 Sum_probs=172.3
Q ss_pred CCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCc
Q 043667 30 FSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGV 109 (387)
Q Consensus 30 l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i 109 (387)
+++|++|+++++ .+..++.++.+++|++|+++++ .+..++. +..+++|++|++.++ .+... ..+
T Consensus 43 l~~L~~L~l~~~-~i~~~~~~~~~~~L~~L~l~~n-~i~~~~~-------~~~l~~L~~L~L~~n-~i~~~------~~~ 106 (347)
T 4fmz_A 43 LESITKLVVAGE-KVASIQGIEYLTNLEYLNLNGN-QITDISP-------LSNLVKLTNLYIGTN-KITDI------SAL 106 (347)
T ss_dssp HTTCSEEECCSS-CCCCCTTGGGCTTCCEEECCSS-CCCCCGG-------GTTCTTCCEEECCSS-CCCCC------GGG
T ss_pred cccccEEEEeCC-ccccchhhhhcCCccEEEccCC-ccccchh-------hhcCCcCCEEEccCC-cccCc------hHH
Confidence 444445555443 3344444444445555555444 3333322 123444445544443 11111 112
Q ss_pred cCCCCcceEeeccCcccccccCCCCCCccEEEeccCcccc--ccccCCCCcceEEEcCccceeEecccccCCCCcEEecc
Q 043667 110 EGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELS--VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCR 187 (387)
Q Consensus 110 ~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~ 187 (387)
..+++|++|+++++.-........+++|+.|++++|.... ..+..+++|++|+++++....... +..+++|++|+++
T Consensus 107 ~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 107 QNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLN 185 (347)
T ss_dssp TTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECT
T ss_pred cCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEcc
Confidence 2345555555554421110001234555555555553222 335566667777766654433322 4556777777777
Q ss_pred CCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCcc
Q 043667 188 DTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLE 267 (387)
Q Consensus 188 ~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~ 267 (387)
++. +..++. ...+++|+. +.+.++. +..++. ++.+++|++|++++| .+..++. +..+ ++|+
T Consensus 186 ~n~-l~~~~~--~~~l~~L~~--L~l~~n~-l~~~~~--~~~~~~L~~L~l~~n-~l~~~~~------~~~l----~~L~ 246 (347)
T 4fmz_A 186 YNQ-IEDISP--LASLTSLHY--FTAYVNQ-ITDITP--VANMTRLNSLKIGNN-KITDLSP------LANL----SQLT 246 (347)
T ss_dssp TSC-CCCCGG--GGGCTTCCE--EECCSSC-CCCCGG--GGGCTTCCEEECCSS-CCCCCGG------GTTC----TTCC
T ss_pred CCc-cccccc--ccCCCccce--eecccCC-CCCCch--hhcCCcCCEEEccCC-ccCCCcc------hhcC----CCCC
Confidence 653 222221 234556666 6666653 333332 567889999999986 4444432 3333 8999
Q ss_pred EEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcceEecccC
Q 043667 268 YLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERC 347 (387)
Q Consensus 268 ~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c 347 (387)
+|++++| .++.++ .+..+++|+.|++++| .++.++.....++|++|++++|.--...+..+..+++ |++|++++|
T Consensus 247 ~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n 321 (347)
T 4fmz_A 247 WLEIGTN-QISDIN-AVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN--LTTLFLSQN 321 (347)
T ss_dssp EEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTT--CSEEECCSS
T ss_pred EEECCCC-ccCCCh-hHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcChhHhhcccc--CCEEEccCC
Confidence 9999886 466664 5778899999999985 6777654444489999999987633344455666777 999999997
Q ss_pred cccccccCCCCCCCccEEeecCCc
Q 043667 348 RSLTYIAGVQLPPSLKRLDIWNCD 371 (387)
Q Consensus 348 ~~l~~~~~~~~~~~L~~L~l~~C~ 371 (387)
.++.++....+++|++|++++|+
T Consensus 322 -~l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 322 -HITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp -SCCCCGGGGGCTTCSEESSSCC-
T ss_pred -ccccccChhhhhccceeehhhhc
Confidence 57776655567899999999865
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=9.8e-23 Score=201.47 Aligned_cols=88 Identities=22% Similarity=0.233 Sum_probs=49.5
Q ss_pred ccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCc--cccccccCCCCCcceEecccCcccccccCC--
Q 043667 283 SSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKS--LPEAWMCDTNSSLETLKIERCRSLTYIAGV-- 356 (387)
Q Consensus 283 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~--l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-- 356 (387)
.+..+++|+.|++++| .++......+. ++|++|++++|. +.. +|..+..+++ |++|++++| +++.++..
T Consensus 419 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~--L~~L~Ls~n-~l~~~~~~~~ 493 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYT-NTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTN--LTFLDLSKC-QLEQISWGVF 493 (606)
T ss_dssp TTTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTT--CCEEECTTS-CCCEECTTTT
T ss_pred hhhccccCCEEECcCC-CCCccchhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCC--CCEEECCCC-cCCccChhhh
Confidence 3445555555555553 33332222222 566666666654 332 4555555566 777777775 56555443
Q ss_pred CCCCCccEEeecCCcccccc
Q 043667 357 QLPPSLKRLDIWNCDNIRTL 376 (387)
Q Consensus 357 ~~~~~L~~L~l~~C~~l~~l 376 (387)
..+++|++|++++|. ++.+
T Consensus 494 ~~l~~L~~L~Ls~N~-l~~~ 512 (606)
T 3vq2_A 494 DTLHRLQLLNMSHNN-LLFL 512 (606)
T ss_dssp TTCTTCCEEECCSSC-CSCE
T ss_pred cccccCCEEECCCCc-CCCc
Confidence 456778888888764 4554
No 15
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=3.7e-22 Score=199.99 Aligned_cols=58 Identities=12% Similarity=0.058 Sum_probs=37.0
Q ss_pred CCCCCcEEEEcCcCCCCCCC-ccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCC
Q 043667 4 PHKNLEQFCISGYRGAKFPT-WFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGM 64 (387)
Q Consensus 4 ~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~ 64 (387)
..++||+|+++++....+|. .++. +++|++|++++| .+..+++ ++.+++|++|++.++
T Consensus 71 ~l~~L~~L~L~~n~l~~l~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 131 (680)
T 1ziw_A 71 KLPMLKVLNLQHNELSQLSDKTFAF--CTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHN 131 (680)
T ss_dssp HCTTCCEEECCSSCCCCCCTTTTTT--CTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSS
T ss_pred cccCcCEEECCCCccCccChhhhcc--CCCCCEEECCCC-ccCccChhHccccCCCCEEECCCC
Confidence 34667777777776666665 3554 677777777765 4455542 666667777776666
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=3.6e-23 Score=202.14 Aligned_cols=346 Identities=17% Similarity=0.189 Sum_probs=191.1
Q ss_pred CCCcEEEEcCcCCCCC-CCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccC
Q 043667 6 KNLEQFCISGYRGAKF-PTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIP 82 (387)
Q Consensus 6 ~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 82 (387)
++|++|+++++....+ |..+.. +++|++|++++| .++.+++ ++.+++|++|+++++ .+..++... +..
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-----~~~ 96 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRA--CANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSW-----FGP 96 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSS--CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHH-----HTT
T ss_pred CCccEEECcCCccCccChhhhhc--CCcccEEECCCC-CcCccChhhccccccCCEEECCCC-ccCccCHHH-----hcc
Confidence 4677777777776655 445555 777777777775 5555553 677777777777777 455554432 234
Q ss_pred CCCcceeeccccCCcccc-ccCcCCCCccCCCCcceEeeccCcccccccC----CCCCCccEEEeccCccc---cccccC
Q 043667 83 FPRLETLRFDAMLGWEDW-IPLRSGQGVEGFPKLRELHILRCSKLQGTFP----EHLPALEMLVIEACKEL---SVSVSS 154 (387)
Q Consensus 83 ~~~L~~L~l~~~~~l~~~-~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~----~~~~~L~~L~l~~~~~l---~~~~~~ 154 (387)
+++|++|+++++. +... .. ..+..+++|++|+++++..+. .+| ..+++|+.|+++++... +..++.
T Consensus 97 l~~L~~L~Ls~n~-l~~~~~~----~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 97 LSSLKYLNLMGNP-YQTLGVT----SLFPNLTNLQTLRIGNVETFS-EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp CTTCCEEECTTCC-CSSSCSS----CSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred CCCCcEEECCCCc-ccccchh----hhhhccCCccEEECCCCcccc-ccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 6677777776543 2211 11 223346666666666653232 222 22455666666554321 122333
Q ss_pred ------------------------CCCcceEEEcCccceeEe----ccc----------------------------ccC
Q 043667 155 ------------------------LPALCKLKIGGCKKVVWR----SAT----------------------------DHL 178 (387)
Q Consensus 155 ------------------------~~~L~~L~i~~~~~~~~~----~~~----------------------------~~~ 178 (387)
+++|++|+++++...... ... ..+
T Consensus 171 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 250 (549)
T 2z81_A 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250 (549)
T ss_dssp CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred cccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence 455555555544321110 001 112
Q ss_pred CCCcEEeccCCCCcc--cccC---CCCCCCc-----------------------------cccceeEEEcCCCCcccccc
Q 043667 179 GSQNSVVCRDTSNQV--FLAG---PLKPQLP-----------------------------KLEELILSTKEQTYIWKSHD 224 (387)
Q Consensus 179 ~~L~~L~l~~~~~l~--~~~~---~~~~~l~-----------------------------~L~~l~L~l~~~~~~~~~~~ 224 (387)
++|+.+++.+|.... .+.. .....++ +|++ +.+.++. +..+|.
T Consensus 251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~--L~l~~n~-l~~ip~ 327 (549)
T 2z81_A 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR--ITVENSK-VFLVPC 327 (549)
T ss_dssp TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCE--EEEESSC-CCCCCH
T ss_pred ccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceE--EEeccCc-cccCCH
Confidence 233333333321100 0000 0012222 2333 4444332 344555
Q ss_pred cccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCccc---ccCCCCCccEEEecCCCCc
Q 043667 225 GLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ---SSLSLSSLREIDIYDCSSL 301 (387)
Q Consensus 225 ~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~~L~~L~l~~c~~l 301 (387)
.+++.+++|++|+++++.-.+.++... ..+..+ ++|++|++++| .++.++. .+..+++|+.|++++| .+
T Consensus 328 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~~~~l----~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l 399 (549)
T 2z81_A 328 SFSQHLKSLEFLDLSENLMVEEYLKNS--ACKGAW----PSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TF 399 (549)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHH--TCTTSS----TTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CC
T ss_pred HHHhcCccccEEEccCCccccccccch--hhhhcc----ccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CC
Confidence 544567778888887764433332210 012333 78888888875 4665542 3667888888888874 67
Q ss_pred eecCCCC-cCCCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCCCCCCCccEEeecCCcccccccccc
Q 043667 302 VSFPEVA-LPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTLTVEE 380 (387)
Q Consensus 302 ~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~ 380 (387)
+.+|... ..++|++|++++|. ++.++..+ ..+ |++|++++| +++.++ ..+++|++|++++| +++.+|...
T Consensus 400 ~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~--~~~--L~~L~Ls~N-~l~~~~--~~l~~L~~L~Ls~N-~l~~ip~~~ 470 (549)
T 2z81_A 400 HPMPDSCQWPEKMRFLNLSSTG-IRVVKTCI--PQT--LEVLDVSNN-NLDSFS--LFLPRLQELYISRN-KLKTLPDAS 470 (549)
T ss_dssp CCCCSCCCCCTTCCEEECTTSC-CSCCCTTS--CTT--CSEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSSCCCGG
T ss_pred ccCChhhcccccccEEECCCCC-cccccchh--cCC--ceEEECCCC-Chhhhc--ccCChhcEEECCCC-ccCcCCCcc
Confidence 7776532 23788888888854 77776543 244 888888886 677665 45789999999995 688999654
Q ss_pred ccccCC
Q 043667 381 GVQSSS 386 (387)
Q Consensus 381 ~~~~~~ 386 (387)
.++.|+
T Consensus 471 ~l~~L~ 476 (549)
T 2z81_A 471 LFPVLL 476 (549)
T ss_dssp GCTTCC
T ss_pred cCccCC
Confidence 455543
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=1.7e-22 Score=196.00 Aligned_cols=155 Identities=14% Similarity=0.171 Sum_probs=94.5
Q ss_pred CCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCC-
Q 043667 201 PQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK- 279 (387)
Q Consensus 201 ~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~- 279 (387)
..+++|++ +.++++.....+|.. ++.+++|++|+++++ .+..++. .+..+..+ ++|++|+++++. ++.
T Consensus 321 ~~l~~L~~--L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~l~~--~~~~~~~l----~~L~~L~Ls~N~-l~~~ 389 (520)
T 2z7x_B 321 SKISPFLH--LDFSNNLLTDTVFEN-CGHLTELETLILQMN-QLKELSK--IAEMTTQM----KSLQQLDISQNS-VSYD 389 (520)
T ss_dssp SSCCCCCE--EECCSSCCCTTTTTT-CCCCSSCCEEECCSS-CCCBHHH--HHHHHTTC----TTCCEEECCSSC-CBCC
T ss_pred hhCCcccE--EEeECCccChhhhhh-hccCCCCCEEEccCC-ccCcccc--chHHHhhC----CCCCEEECCCCc-CCcc
Confidence 45566666 677665443334433 556777777777764 3333221 11134444 777777777754 444
Q ss_pred cccc-cCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCC--
Q 043667 280 LPQS-SLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGV-- 356 (387)
Q Consensus 280 ~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-- 356 (387)
+|.. +..+++|+.|++++| .++......++++|++|++++| .++.+|..+..+++ |++|++++| +++.++..
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~--L~~L~L~~N-~l~~l~~~~~ 464 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSN-ILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEA--LQELNVASN-QLKSVPDGIF 464 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSS-CCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTT--CCEEECCSS-CCCCCCTTTT
T ss_pred cccchhccCccCCEEECcCC-CCCcchhhhhcccCCEEECCCC-cccccchhhhcCCC--CCEEECCCC-cCCccCHHHh
Confidence 6653 556777788887774 3432222233367888888775 46777776666666 888888775 67777654
Q ss_pred CCCCCccEEeecCCc
Q 043667 357 QLPPSLKRLDIWNCD 371 (387)
Q Consensus 357 ~~~~~L~~L~l~~C~ 371 (387)
..+++|++|++++++
T Consensus 465 ~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 465 DRLTSLQKIWLHTNP 479 (520)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred ccCCcccEEECcCCC
Confidence 345777888877755
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=3e-22 Score=194.38 Aligned_cols=336 Identities=12% Similarity=0.031 Sum_probs=196.3
Q ss_pred CCCcEEEEcCcCCCCCC-CccCCccCCCccEEEeecCCCCCCCC--CcCCcCCCcEEEecCCCCceEeCccccCCCcccC
Q 043667 6 KNLEQFCISGYRGAKFP-TWFGDSSFSNLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIP 82 (387)
Q Consensus 6 ~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~l~~c~~~~~l~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 82 (387)
++|++|+++++.+..++ ..+.. +++|++|++++| .++.++ .++.+++|++|+++++ .++.++.. .
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--------~ 88 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILS--LSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--------P 88 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTT--CTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--------C
T ss_pred ccccEEECCCCcccccChhhccc--cccccEEecCCC-ccCCcChHHhhcccCCCEEecCCC-ceeecCcc--------c
Confidence 57778888877776664 45555 777888888775 555553 3777788888888877 56666542 3
Q ss_pred CCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCCCc--cEEEeccCcc-----ccccc---
Q 043667 83 FPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPAL--EMLVIEACKE-----LSVSV--- 152 (387)
Q Consensus 83 ~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L--~~L~l~~~~~-----l~~~~--- 152 (387)
+++|++|+++++.-.....+ ..++.+++|++|+++++. +.+.....+++| +.|++.++.. .+..+
T Consensus 89 l~~L~~L~L~~N~l~~~~~p----~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l 163 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPIC----KEFGNMSQLKFLGLSTTH-LEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCC----GGGGGCTTCCEEEEEESS-CCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTC
T ss_pred cCCccEEeccCCccccccch----hhhccCCcceEEEecCcc-cchhhccccccceeeEEEeeccccccccccccccccc
Confidence 67788888876542111111 234457788888887753 332333346666 7777776543 01111
Q ss_pred -----------------------cCCCCcceEEEcCcc-------ceeEeccccc-------------------------
Q 043667 153 -----------------------SSLPALCKLKIGGCK-------KVVWRSATDH------------------------- 177 (387)
Q Consensus 153 -----------------------~~~~~L~~L~i~~~~-------~~~~~~~~~~------------------------- 177 (387)
..+++|+.++++++. .......+..
T Consensus 164 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 243 (520)
T 2z7x_B 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243 (520)
T ss_dssp CEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHH
T ss_pred ccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHH
Confidence 123344444443321 0000001111
Q ss_pred --CCCCcEEeccCCCCcccccCCC----CCCCccccceeEEEcCCCCcccccc-------------------------cc
Q 043667 178 --LGSQNSVVCRDTSNQVFLAGPL----KPQLPKLEELILSTKEQTYIWKSHD-------------------------GL 226 (387)
Q Consensus 178 --~~~L~~L~l~~~~~l~~~~~~~----~~~l~~L~~l~L~l~~~~~~~~~~~-------------------------~~ 226 (387)
.++|++|+++++.-...++... ...+++|+. +.+..+.. .+|. ..
T Consensus 244 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~--l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 319 (520)
T 2z7x_B 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI--HQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319 (520)
T ss_dssp HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEE--EEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC
T ss_pred hhhCcccEEEeecccccCccccchhhcccccCceeEe--ccccccce--ecchhhhhcccccCceeEEEcCCCccccccc
Confidence 2355555555543211222221 034444444 44433322 1220 00
Q ss_pred cccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCC---cccccCCCCCccEEEecCCCCcee
Q 043667 227 LQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK---LPQSSLSLSSLREIDIYDCSSLVS 303 (387)
Q Consensus 227 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~---~~~~~~~~~~L~~L~l~~c~~l~~ 303 (387)
.+.+++|++|+++++.--+.++. ++..+ ++|++|++++|. ++. +|..+..+++|+.|+++++ .++.
T Consensus 320 ~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l----~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~ 388 (520)
T 2z7x_B 320 PSKISPFLHLDFSNNLLTDTVFE-----NCGHL----TELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQN-SVSY 388 (520)
T ss_dssp CSSCCCCCEEECCSSCCCTTTTT-----TCCCC----SSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSS-CCBC
T ss_pred hhhCCcccEEEeECCccChhhhh-----hhccC----CCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCC-cCCc
Confidence 14677888888887543332332 34444 888888888754 553 4455778888999999884 5555
Q ss_pred -cCCCCcC--CCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCC-CCCCCccEEeecCCccccccccc
Q 043667 304 -FPEVALP--SKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGV-QLPPSLKRLDIWNCDNIRTLTVE 379 (387)
Q Consensus 304 -~~~~~~~--~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~C~~l~~l~~~ 379 (387)
++...+. ++|++|++++|.--..++..+. ++ |++|++++| +++.+|.. ..+++|++|++++| +++.+|.+
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~--L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~ 462 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PR--IKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDG 462 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TT--CCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTT
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhc--cc--CCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHH
Confidence 6654332 7899999988764345555431 45 999999996 78888875 56789999999995 68899865
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=2.5e-22 Score=191.63 Aligned_cols=340 Identities=14% Similarity=0.100 Sum_probs=205.3
Q ss_pred CCCCcEEEEcCcCCCCC-CCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667 5 HKNLEQFCISGYRGAKF-PTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI 81 (387)
Q Consensus 5 ~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 81 (387)
+++|++|+++++.+..+ |..++. +++|++|++++|.....++. ++.+++|++|+++++ .+..+.... +.
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-----~~ 100 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSR--LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGA-----FN 100 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSS--CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTT-----TT
T ss_pred CCccCEEEecCCccCcCChhHhcc--CccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhh-----cc
Confidence 36788888888877765 666665 88888888888644345543 777888888888888 455553332 34
Q ss_pred CCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCC----CCCCccEEEeccCcccc---ccccC
Q 043667 82 PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPE----HLPALEMLVIEACKELS---VSVSS 154 (387)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~----~~~~L~~L~l~~~~~l~---~~~~~ 154 (387)
.+++|++|++.++.-...... ...+..+++|++|+++++. +.+..|. .+++|+.|+++++.... ..+..
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~---~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 176 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLS---GNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHH---SSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG
T ss_pred CcccCCEEeCCCCCCCccccC---cccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhc
Confidence 578888888887542211110 0224457788888887763 3323332 36788888887765221 22222
Q ss_pred C--CCcceEEEcCccceeEec---------ccccCCCCcEEeccCCCCcccccCCC--CCCCccccceeEEEcCCCCccc
Q 043667 155 L--PALCKLKIGGCKKVVWRS---------ATDHLGSQNSVVCRDTSNQVFLAGPL--KPQLPKLEELILSTKEQTYIWK 221 (387)
Q Consensus 155 ~--~~L~~L~i~~~~~~~~~~---------~~~~~~~L~~L~l~~~~~l~~~~~~~--~~~l~~L~~l~L~l~~~~~~~~ 221 (387)
+ ++|+.+++.++....... .+..+++|++|+++++.-....+... ....++|+. +.+..+.....
T Consensus 177 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~--L~l~~~~~~~~ 254 (455)
T 3v47_A 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS--LILSNSYNMGS 254 (455)
T ss_dssp GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEE--EECTTCTTTSC
T ss_pred cccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceee--Eeecccccccc
Confidence 2 566677766654333111 11234667777777664322111110 011244555 66655432221
Q ss_pred ---------ccccccc--cCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCc-ccccCCCCC
Q 043667 222 ---------SHDGLLQ--DICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL-PQSSLSLSS 289 (387)
Q Consensus 222 ---------~~~~~l~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~ 289 (387)
.....+. ..++|++|+++++. +..+.+. .+..+ ++|++|+++++. ++.+ +..+..+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~----~~~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 324 (455)
T 3v47_A 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKS----VFSHF----TDLEQLTLAQNE-INKIDDNAFWGLTH 324 (455)
T ss_dssp CTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECTT----TTTTC----TTCCEEECTTSC-CCEECTTTTTTCTT
T ss_pred ccchhhhccCcccccccccccCceEEEecCcc-ccccchh----hcccC----CCCCEEECCCCc-ccccChhHhcCccc
Confidence 0000011 23678888888854 3333322 35555 888999988864 5554 446778888
Q ss_pred ccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCcc-ccccccCCCCCcceEecccCcccccccCC--CCCCCccE
Q 043667 290 LREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSL-PEAWMCDTNSSLETLKIERCRSLTYIAGV--QLPPSLKR 364 (387)
Q Consensus 290 L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~ 364 (387)
|+.|+++++ .++.++...+. ++|++|++++|. ++.+ +..+..+++ |++|+++++ +++.++.. ..+++|++
T Consensus 325 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~--L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 399 (455)
T 3v47_A 325 LLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPN--LKELALDTN-QLKSVPDGIFDRLTSLQK 399 (455)
T ss_dssp CCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTT--CCEEECCSS-CCSCCCTTTTTTCTTCCE
T ss_pred CCEEECCCC-ccCCcChhHhcCcccCCEEECCCCc-ccccChhhcccccc--ccEEECCCC-ccccCCHhHhccCCcccE
Confidence 999999884 66766544433 789999998864 5655 556666667 999999884 78777765 45688899
Q ss_pred EeecCCccc
Q 043667 365 LDIWNCDNI 373 (387)
Q Consensus 365 L~l~~C~~l 373 (387)
|++++++--
T Consensus 400 L~l~~N~l~ 408 (455)
T 3v47_A 400 IWLHTNPWD 408 (455)
T ss_dssp EECCSSCBC
T ss_pred EEccCCCcc
Confidence 998875543
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=5.9e-22 Score=194.37 Aligned_cols=110 Identities=20% Similarity=0.227 Sum_probs=75.0
Q ss_pred CCccEEEeccCCCCCCcc--cccCCCCCccEEEecCCCCceecCCCCc--CCCceEEEeccCCCC-CccccccccCCCCC
Q 043667 264 CRLEYLRLRYCKGLVKLP--QSSLSLSSLREIDIYDCSSLVSFPEVAL--PSKLKKIEIRKCDAL-KSLPEAWMCDTNSS 338 (387)
Q Consensus 264 ~~L~~L~l~~c~~l~~~~--~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~~l-~~l~~~~~~~~~~~ 338 (387)
++|++|++++|. ++..+ ..+..+++|+.|++++| .+.......+ .++|++|++++|... ..+|..+..+++
T Consensus 396 ~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~-- 471 (570)
T 2z63_A 396 EQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN-- 471 (570)
T ss_dssp TTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT--
T ss_pred CCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCC-cccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC--
Confidence 667777776644 33332 24667788888888875 4454433333 278899999887632 257777766777
Q ss_pred cceEecccCcccccccCC--CCCCCccEEeecCCccccccccc
Q 043667 339 LETLKIERCRSLTYIAGV--QLPPSLKRLDIWNCDNIRTLTVE 379 (387)
Q Consensus 339 L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~C~~l~~l~~~ 379 (387)
|++|++++| +++.+... ..+++|++|++++| +++.+|.+
T Consensus 472 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~ 512 (570)
T 2z63_A 472 LTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDG 512 (570)
T ss_dssp CCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred CCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCCHH
Confidence 999999996 67766433 56789999999986 57887754
No 21
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.1e-21 Score=183.48 Aligned_cols=296 Identities=16% Similarity=0.150 Sum_probs=183.5
Q ss_pred CCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCC
Q 043667 30 FSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQ 107 (387)
Q Consensus 30 l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 107 (387)
+++++.|+++++ .++.+|. ++.+++|++|++.++ .+..++... +..+++|++|++.++. +..... .
T Consensus 44 l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~-----~~~l~~L~~L~L~~n~-l~~~~~----~ 111 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYA-----FAYAHTIQKLYMGFNA-IRYLPP----H 111 (390)
T ss_dssp GCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTS-CCCEECTTT-----TTTCTTCCEEECCSSC-CCCCCT----T
T ss_pred cCCceEEEecCC-chhhCChhHhcccccCcEEECCCC-cccccChhh-----ccCCCCcCEEECCCCC-CCcCCH----H
Confidence 567777777664 5666665 566777777777776 455554432 2346777777777643 333332 3
Q ss_pred CccCCCCcceEeeccCcccccccCC----CCCCccEEEeccCcccc---ccccCCCCcceEEEcCccceeEecccccCCC
Q 043667 108 GVEGFPKLRELHILRCSKLQGTFPE----HLPALEMLVIEACKELS---VSVSSLPALCKLKIGGCKKVVWRSATDHLGS 180 (387)
Q Consensus 108 ~i~~~~~L~~L~l~~~~~l~~~~~~----~~~~L~~L~l~~~~~l~---~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~ 180 (387)
.+..+++|++|+++++ .+. .+|. .+++|+.|+++++.... ..+..+++|++|+++++..... .+..+++
T Consensus 112 ~~~~l~~L~~L~L~~n-~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~ 187 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERN-DLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPS 187 (390)
T ss_dssp TTTTCTTCCEEECCSS-CCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTT
T ss_pred HhcCCCCCCEEECCCC-ccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccc
Confidence 3445677777777765 333 3332 35677777777664221 3466677777777776643332 2345677
Q ss_pred CcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhh
Q 043667 181 QNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLC 260 (387)
Q Consensus 181 L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~ 260 (387)
|+.++++++. +..++ ..+.|++ +.++++. +..++.. .+++|++|+++++ .+...+ .+..+
T Consensus 188 L~~L~l~~n~-l~~~~-----~~~~L~~--L~l~~n~-l~~~~~~---~~~~L~~L~l~~n-~l~~~~------~l~~l- 247 (390)
T 3o6n_A 188 LFHANVSYNL-LSTLA-----IPIAVEE--LDASHNS-INVVRGP---VNVELTILKLQHN-NLTDTA------WLLNY- 247 (390)
T ss_dssp CSEEECCSSC-CSEEE-----CCSSCSE--EECCSSC-CCEEECC---CCSSCCEEECCSS-CCCCCG------GGGGC-
T ss_pred cceeeccccc-ccccC-----CCCcceE--EECCCCe-eeecccc---ccccccEEECCCC-CCcccH------HHcCC-
Confidence 7777777642 22221 1234555 7766643 3444433 3567888888875 344332 34444
Q ss_pred hccCCccEEEeccCCCCCCc-ccccCCCCCccEEEecCCCCceecCCCCc-CCCceEEEeccCCCCCccccccccCCCCC
Q 043667 261 ELSCRLEYLRLRYCKGLVKL-PQSSLSLSSLREIDIYDCSSLVSFPEVAL-PSKLKKIEIRKCDALKSLPEAWMCDTNSS 338 (387)
Q Consensus 261 ~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 338 (387)
++|++|+++++. ++.+ +..+..+++|+.|++++ +.++.++.... .++|++|++++| .++.+|..+..+++
T Consensus 248 ---~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~-- 319 (390)
T 3o6n_A 248 ---PGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDR-- 319 (390)
T ss_dssp ---TTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTT--
T ss_pred ---CCccEEECCCCc-CCCcChhHccccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCC-cceecCccccccCc--
Confidence 888888888764 5544 55677888888888887 46777665433 278888888876 47777766666666
Q ss_pred cceEecccCcccccccCCCCCCCccEEeecCCc
Q 043667 339 LETLKIERCRSLTYIAGVQLPPSLKRLDIWNCD 371 (387)
Q Consensus 339 L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~C~ 371 (387)
|++|+++++ .++.++. ..+++|++|++++++
T Consensus 320 L~~L~L~~N-~i~~~~~-~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 320 LENLYLDHN-SIVTLKL-STHHTLKNLTLSHND 350 (390)
T ss_dssp CSEEECCSS-CCCCCCC-CTTCCCSEEECCSSC
T ss_pred CCEEECCCC-ccceeCc-hhhccCCEEEcCCCC
Confidence 888888885 5776653 456788888888744
No 22
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=1.3e-21 Score=195.89 Aligned_cols=125 Identities=18% Similarity=0.190 Sum_probs=67.9
Q ss_pred CCCcEEEEcCcCCCCCCC-ccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccC
Q 043667 6 KNLEQFCISGYRGAKFPT-WFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIP 82 (387)
Q Consensus 6 ~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 82 (387)
+++++|+++++....+|. .++. +++|++|+++++ .++.+++ ++++++|++|+++++ .+..++... +..
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~-----~~~ 95 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTR--YSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKT-----FAF 95 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGG--GTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTT-----TTT
T ss_pred CCCcEEECCCCCCCCcCHHHHhC--CCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCC-ccCccChhh-----hcc
Confidence 567777777777666654 3444 677777777665 4444432 556677777777666 455554432 234
Q ss_pred CCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCC---CCCCccEEEeccC
Q 043667 83 FPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPE---HLPALEMLVIEAC 145 (387)
Q Consensus 83 ~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~---~~~~L~~L~l~~~ 145 (387)
+++|++|+++++. +..... ..+..+++|++|+++++ .+.+..|. .+++|+.|+++++
T Consensus 96 l~~L~~L~L~~n~-l~~~~~----~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 96 CTNLTELHLMSNS-IQKIKN----NPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp CTTCSEEECCSSC-CCCCCS----CTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSS
T ss_pred CCCCCEEECCCCc-cCccCh----hHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCC
Confidence 5666666666542 222222 23334566666666554 22222222 2455555555554
No 23
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=2.3e-21 Score=198.51 Aligned_cols=102 Identities=16% Similarity=-0.007 Sum_probs=51.8
Q ss_pred CccEEEeccCccc---cccccCCCCcceEEEcCccceeE-ecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeE
Q 043667 136 ALEMLVIEACKEL---SVSVSSLPALCKLKIGGCKKVVW-RSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELIL 211 (387)
Q Consensus 136 ~L~~L~l~~~~~l---~~~~~~~~~L~~L~i~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L 211 (387)
+|+.|+++++... ...+..+++|+.|+++++..... +..+..+++|++|+++++.- ..+.......+++|+. +
T Consensus 267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~--L 343 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL-GELYSSNFYGLPKVAY--I 343 (844)
T ss_dssp CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC-SCCCSCSCSSCTTCCE--E
T ss_pred CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC-CccCHHHhcCCCCCCE--E
Confidence 4555555544311 13345556666666665544332 23445556666666665532 2222222445556666 6
Q ss_pred EEcCCCCcccccccccccCCCccEEEecCC
Q 043667 212 STKEQTYIWKSHDGLLQDICSLKKLTIDWC 241 (387)
Q Consensus 212 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 241 (387)
.++++ .+..++...++.+++|++|+++++
T Consensus 344 ~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 344 DLQKN-HIAIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp ECCSC-CCCCCCSSCSCSCCCCCEEEEETC
T ss_pred ECCCC-CCCccChhhhcCCCCCCEEECCCC
Confidence 66554 344444444555666666666654
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=8.9e-22 Score=193.11 Aligned_cols=347 Identities=15% Similarity=0.135 Sum_probs=198.3
Q ss_pred CCCCCCCcEEEEcCcCCCCCC-CccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceE--eCccccC
Q 043667 2 LEPHKNLEQFCISGYRGAKFP-TWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKR--LGSEFYG 76 (387)
Q Consensus 2 ~~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~--~~~~~~~ 76 (387)
|..+++|++|+++++....+| ..++. +++|++|+++++ .++.++. ++.+++|++|+++++ .+.. ++..
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~--- 144 (570)
T 2z63_A 72 YQSLSHLSTLILTGNPIQSLALGAFSG--LSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY--- 144 (570)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTT--CTTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG---
T ss_pred ccCchhCCEEeCcCCcCCccCHhhhcC--cccccccccccc-ccccCCCccccccccccEEecCCC-ccceecChhh---
Confidence 556778888888888776664 55665 788888888775 5666664 777888888888777 4443 2322
Q ss_pred CCcccCCCCcceeeccccCCcccccc--------C--------cCCCCc-------cCCCCcceEeeccC----------
Q 043667 77 KGAAIPFPRLETLRFDAMLGWEDWIP--------L--------RSGQGV-------EGFPKLRELHILRC---------- 123 (387)
Q Consensus 77 ~~~~~~~~~L~~L~l~~~~~l~~~~~--------~--------~~~~~i-------~~~~~L~~L~l~~~---------- 123 (387)
+..+++|++|++.++.- ..... . .....+ ....+|+.|+++++
T Consensus 145 ---~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 220 (570)
T 2z63_A 145 ---FSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC 220 (570)
T ss_dssp ---GGGCTTCCEEECTTSCC-CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHH
T ss_pred ---hcccCCCCEEeCcCCcc-ceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhh
Confidence 24567777777665421 11000 0 000000 00112333333321
Q ss_pred -----------------------------------------------cccccccCC---CCCCccEEEeccCc--ccccc
Q 043667 124 -----------------------------------------------SKLQGTFPE---HLPALEMLVIEACK--ELSVS 151 (387)
Q Consensus 124 -----------------------------------------------~~l~~~~~~---~~~~L~~L~l~~~~--~l~~~ 151 (387)
..+.+..+. .+++|+.|++.++. .++..
T Consensus 221 ~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~ 300 (570)
T 2z63_A 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300 (570)
T ss_dssp HHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBC
T ss_pred hcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhh
Confidence 011111121 24566666665543 22233
Q ss_pred ccCCCCcceEEEcCccceeEec--------------------ccccCCCCcEEeccCCCCccccc-CCCCCCCcccccee
Q 043667 152 VSSLPALCKLKIGGCKKVVWRS--------------------ATDHLGSQNSVVCRDTSNQVFLA-GPLKPQLPKLEELI 210 (387)
Q Consensus 152 ~~~~~~L~~L~i~~~~~~~~~~--------------------~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~l~~L~~l~ 210 (387)
+..+ +|++|++.++....++. ....+++|++|+++++.-..... ......+++|++
T Consensus 301 ~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~-- 377 (570)
T 2z63_A 301 SYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY-- 377 (570)
T ss_dssp CSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCE--
T ss_pred hccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCE--
Confidence 3333 55555555443222221 01344555555555543211100 000224455555
Q ss_pred EEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCc
Q 043667 211 LSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSL 290 (387)
Q Consensus 211 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L 290 (387)
+.++++. +..++.. +..+++|++|+++++. +...++.. .+..+ ++|++|++++|......+..+..+++|
T Consensus 378 L~l~~n~-l~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~---~~~~l----~~L~~L~l~~n~l~~~~~~~~~~l~~L 447 (570)
T 2z63_A 378 LDLSFNG-VITMSSN-FLGLEQLEHLDFQHSN-LKQMSEFS---VFLSL----RNLIYLDISHTHTRVAFNGIFNGLSSL 447 (570)
T ss_dssp EECCSCS-EEEEEEE-EETCTTCCEEECTTSE-EESCTTSC---TTTTC----TTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred EECCCCc-ccccccc-ccccCCCCEEEccCCc-cccccchh---hhhcC----CCCCEEeCcCCcccccchhhhhcCCcC
Confidence 6666553 3334444 5667888888888753 33322210 24444 899999999986444556678899999
Q ss_pred cEEEecCCCCce--ecCCC-CcCCCceEEEeccCCCCCcc-ccccccCCCCCcceEecccCcccccccCC--CCCCCccE
Q 043667 291 REIDIYDCSSLV--SFPEV-ALPSKLKKIEIRKCDALKSL-PEAWMCDTNSSLETLKIERCRSLTYIAGV--QLPPSLKR 364 (387)
Q Consensus 291 ~~L~l~~c~~l~--~~~~~-~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~ 364 (387)
+.|++++| .++ .++.. ...++|++|++++|. ++.+ |..+..+++ |++|++++| +++.++.. ..+++|++
T Consensus 448 ~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~--L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 522 (570)
T 2z63_A 448 EVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSS--LQVLNMASN-QLKSVPDGIFDRLTSLQK 522 (570)
T ss_dssp CEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTT--CCEEECCSS-CCSCCCTTTTTTCTTCCE
T ss_pred cEEECcCC-cCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccC--CCEEeCCCC-cCCCCCHHHhhcccCCcE
Confidence 99999996 443 45532 223899999999975 6665 667777777 999999996 78887765 56789999
Q ss_pred EeecCCccccccc
Q 043667 365 LDIWNCDNIRTLT 377 (387)
Q Consensus 365 L~l~~C~~l~~l~ 377 (387)
|++++++---..|
T Consensus 523 L~l~~N~~~~~~~ 535 (570)
T 2z63_A 523 IWLHTNPWDCSCP 535 (570)
T ss_dssp EECCSSCBCCCTT
T ss_pred EEecCCcccCCCc
Confidence 9999866443343
No 25
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=4.8e-21 Score=196.11 Aligned_cols=342 Identities=14% Similarity=0.123 Sum_probs=207.8
Q ss_pred CCCCcEEEEcCcCCCCC-CCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667 5 HKNLEQFCISGYRGAKF-PTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI 81 (387)
Q Consensus 5 ~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 81 (387)
+++|++|+++++.+..+ |..+.. +++|++|++++|.....+++ ++++++|++|+++++ .+..+.... +.
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~--l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~-----~~ 94 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPF--LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDA-----FQ 94 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSS--CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTS-----SC
T ss_pred CCCcCEEECCCCcCCccChhHCcc--cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhH-----cc
Confidence 57899999999988776 667776 99999999999867777743 899999999999999 666664443 35
Q ss_pred CCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccC----CCCCCccEEEeccCccc---cccccC
Q 043667 82 PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFP----EHLPALEMLVIEACKEL---SVSVSS 154 (387)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~----~~~~~L~~L~l~~~~~l---~~~~~~ 154 (387)
.+++|++|+++++. +.+... ....+..+++|++|+++++.. .+..+ ..+++|+.|+++++..- ...+..
T Consensus 95 ~l~~L~~L~Ls~n~-l~~~~~--~~~~~~~L~~L~~L~Ls~N~l-~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 95 GLFHLFELRLYFCG-LSDAVL--KDGYFRNLKALTRLDLSKNQI-RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp SCSSCCCEECTTCC-CSSCCS--TTCCCSSCSSCCEEEEESCCC-CCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred CCcccCEeeCcCCC-CCcccc--cCccccccCCCCEEECCCCcc-cccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 68999999999864 322111 001245689999999998743 32222 34789999999886522 123333
Q ss_pred C--CCcceEEEcCcccee-EecccccCC------CCcEEeccCCCCcccccCC---------------------------
Q 043667 155 L--PALCKLKIGGCKKVV-WRSATDHLG------SQNSVVCRDTSNQVFLAGP--------------------------- 198 (387)
Q Consensus 155 ~--~~L~~L~i~~~~~~~-~~~~~~~~~------~L~~L~l~~~~~l~~~~~~--------------------------- 198 (387)
+ ++|+.|+++++.... .+.....++ .|+.|+++++.-....+..
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 3 678888887664333 112222222 3777777765211100000
Q ss_pred --------CCC--CCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccE
Q 043667 199 --------LKP--QLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEY 268 (387)
Q Consensus 199 --------~~~--~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~ 268 (387)
... ..++|++ +.++++. +..++...++.+++|+.|+++++ .+..+++. .+..+ ++|++
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~--L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~----~~~~l----~~L~~ 318 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRH--LDLSHGF-VFSLNSRVFETLKDLKVLNLAYN-KINKIADE----AFYGL----DNLQV 318 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCE--EECTTCC-CCEECSCCSSSCCCCCEEEEESC-CCCEECTT----TTTTC----SSCCE
T ss_pred ccCCCChhhhhccccCCccE--EECCCCc-ccccChhhhhcCCCCCEEECCCC-cCCCCChH----HhcCC----CCCCE
Confidence 001 1245666 6666654 33334444666777888888774 44444332 34444 77777
Q ss_pred EEeccCCCCCCc-ccccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCccccccccCCC---------
Q 043667 269 LRLRYCKGLVKL-PQSSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPEAWMCDTN--------- 336 (387)
Q Consensus 269 L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~~~~~~~--------- 336 (387)
|+++++. ++.+ +..+..+++|+.|+++++ .+..++...+. ++|++|+++++. ++.++. .++
T Consensus 319 L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~----~~~L~~L~l~~N 391 (844)
T 3j0a_A 319 LNLSYNL-LGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHF----IPSIPDIFLSGN 391 (844)
T ss_dssp EEEESCC-CSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC-SCCCSS----CCSCSEEEEESC
T ss_pred EECCCCC-CCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC-CCcccC----CCCcchhccCCC
Confidence 7777754 4444 445667777777777773 56666554333 677777777643 444432 222
Q ss_pred ---------CCcceEecccCcccccccCC---CCCCCccEEeecCCccccccccc
Q 043667 337 ---------SSLETLKIERCRSLTYIAGV---QLPPSLKRLDIWNCDNIRTLTVE 379 (387)
Q Consensus 337 ---------~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~C~~l~~l~~~ 379 (387)
..++.++++++ .++.++.. ..+++|++|+++++ +++.++..
T Consensus 392 ~l~~l~~~~~~l~~L~ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~ 444 (844)
T 3j0a_A 392 KLVTLPKINLTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQN-RFSSCSGD 444 (844)
T ss_dssp CCCCCCCCCTTCCEEECCSC-CCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSS
T ss_pred CcccccccccccceeecccC-ccccCchhhhhhcCCccceeeCCCC-cccccccc
Confidence 11444444442 34333221 24678888888884 46665543
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=8e-22 Score=181.36 Aligned_cols=297 Identities=12% Similarity=0.159 Sum_probs=225.9
Q ss_pred CCCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCC
Q 043667 4 PHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPF 83 (387)
Q Consensus 4 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 83 (387)
.+++|++|+++++....+|. +.. +++|++|++++| .++.++.++.+++|++|++.++ .++.++. +..+
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~-~~~--~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n-~i~~~~~-------~~~l 109 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG-IEY--LTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTN-KITDISA-------LQNL 109 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT-GGG--CTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCGG-------GTTC
T ss_pred hcccccEEEEeCCccccchh-hhh--cCCccEEEccCC-ccccchhhhcCCcCCEEEccCC-cccCchH-------HcCC
Confidence 45789999999999888875 554 999999999997 7888888999999999999999 6666542 4578
Q ss_pred CCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccC--CCCCCccEEEeccCcccc-ccccCCCCcce
Q 043667 84 PRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFP--EHLPALEMLVIEACKELS-VSVSSLPALCK 160 (387)
Q Consensus 84 ~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~--~~~~~L~~L~l~~~~~l~-~~~~~~~~L~~ 160 (387)
++|++|++.++. +... ..+..+++|+.|+++++.... .++ ..+++|+.|+++++.... ..+..+++|++
T Consensus 110 ~~L~~L~l~~n~-i~~~------~~~~~l~~L~~L~l~~n~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~ 181 (347)
T 4fmz_A 110 TNLRELYLNEDN-ISDI------SPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYS 181 (347)
T ss_dssp TTCSEEECTTSC-CCCC------GGGTTCTTCCEEECTTCTTCC-CCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred CcCCEEECcCCc-ccCc------hhhccCCceeEEECCCCCCcc-cccchhhCCCCcEEEecCCCcCCchhhccCCCCCE
Confidence 999999999754 3332 224468999999999886554 232 357899999999987433 34788999999
Q ss_pred EEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecC
Q 043667 161 LKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDW 240 (387)
Q Consensus 161 L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 240 (387)
|+++++....+.. +..+++|+.++++++.-. .... ...+++|++ +.++++. ++.++. +..+++|++|++++
T Consensus 182 L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~--L~l~~n~-l~~~~~--~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 182 LSLNYNQIEDISP-LASLTSLHYFTAYVNQIT-DITP--VANMTRLNS--LKIGNNK-ITDLSP--LANLSQLTWLEIGT 252 (347)
T ss_dssp EECTTSCCCCCGG-GGGCTTCCEEECCSSCCC-CCGG--GGGCTTCCE--EECCSSC-CCCCGG--GTTCTTCCEEECCS
T ss_pred EEccCCccccccc-ccCCCccceeecccCCCC-CCch--hhcCCcCCE--EEccCCc-cCCCcc--hhcCCCCCEEECCC
Confidence 9999886554443 677899999999986432 2222 346778888 9998875 444443 66899999999999
Q ss_pred CCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCc--CCCceEEEe
Q 043667 241 CPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVAL--PSKLKKIEI 318 (387)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l 318 (387)
+ .+..++ .+..+ ++|++|++++| .++.++ .+..+++|+.|++++| .++......+ .++|++|++
T Consensus 253 n-~l~~~~------~~~~l----~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 253 N-QISDIN------AVKDL----TKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFL 318 (347)
T ss_dssp S-CCCCCG------GGTTC----TTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEEC
T ss_pred C-ccCCCh------hHhcC----CCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEc
Confidence 6 455542 24544 99999999987 577775 4778999999999996 5555443322 289999999
Q ss_pred ccCCCCCccccccccCCCCCcceEecccC
Q 043667 319 RKCDALKSLPEAWMCDTNSSLETLKIERC 347 (387)
Q Consensus 319 ~~c~~l~~l~~~~~~~~~~~L~~L~l~~c 347 (387)
++|+ ++.++. +..++. |++|++++|
T Consensus 319 ~~n~-l~~~~~-~~~l~~--L~~L~l~~N 343 (347)
T 4fmz_A 319 SQNH-ITDIRP-LASLSK--MDSADFANQ 343 (347)
T ss_dssp CSSS-CCCCGG-GGGCTT--CSEESSSCC
T ss_pred cCCc-cccccC-hhhhhc--cceeehhhh
Confidence 9976 777655 556777 999999996
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=3.7e-21 Score=184.65 Aligned_cols=304 Identities=19% Similarity=0.173 Sum_probs=214.5
Q ss_pred cEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCC--CcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCc
Q 043667 9 EQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRL 86 (387)
Q Consensus 9 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L 86 (387)
+.++.++.....+|..+ .++++.|+++++ .++.++ .++.+++|++|++.++ .+..+.... +..+++|
T Consensus 14 ~~v~c~~~~l~~ip~~~----~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~-----~~~l~~L 82 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI----PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNEN-IVSAVEPGA-----FNNLFNL 82 (477)
T ss_dssp TEEECCSCCCSSCCSCC----CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTS-CCCEECTTT-----TTTCTTC
T ss_pred CEEEeCCCCcCcCCCCC----CCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCC-ccCEeChhh-----hhCCccC
Confidence 56666777777888754 358999999986 677775 3889999999999998 676665443 3468999
Q ss_pred ceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccC---CCCCCccEEEeccCccc---cccccCCCCcce
Q 043667 87 ETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFP---EHLPALEMLVIEACKEL---SVSVSSLPALCK 160 (387)
Q Consensus 87 ~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~---~~~~~L~~L~l~~~~~l---~~~~~~~~~L~~ 160 (387)
++|++.++. +..... ..+..+++|++|+++++. +....+ ..+++|+.|+++++... ...+..+++|++
T Consensus 83 ~~L~L~~n~-l~~~~~----~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 156 (477)
T 2id5_A 83 RTLGLRSNR-LKLIPL----GVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156 (477)
T ss_dssp CEEECCSSC-CCSCCT----TSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCE
T ss_pred CEEECCCCc-CCccCc----ccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCE
Confidence 999998743 444433 334568999999998873 332333 34688999999887532 246778899999
Q ss_pred EEEcCccceeEe-cccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEec
Q 043667 161 LKIGGCKKVVWR-SATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTID 239 (387)
Q Consensus 161 L~i~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 239 (387)
|+++++....++ ..+..+++|+.|++.++.- ..++......+++|++ +.+.++..+..++...+ ...+|++|+++
T Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~--L~l~~~~~~~~~~~~~~-~~~~L~~L~l~ 232 (477)
T 2id5_A 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI-NAIRDYSFKRLYRLKV--LEISHWPYLDTMTPNCL-YGLNLTSLSIT 232 (477)
T ss_dssp EEEESCCCSSCCHHHHTTCTTCCEEEEESCCC-CEECTTCSCSCTTCCE--EEEECCTTCCEECTTTT-TTCCCSEEEEE
T ss_pred EECCCCcCcccChhHhcccCCCcEEeCCCCcC-cEeChhhcccCcccce--eeCCCCccccccCcccc-cCccccEEECc
Confidence 999887554433 3456788999999987643 3344333567778888 88888877777766533 34588888888
Q ss_pred CCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCccc-ccCCCCCccEEEecCCCCceecCCCCcC--CCceEE
Q 043667 240 WCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ-SSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKI 316 (387)
Q Consensus 240 ~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L 316 (387)
++ .+..++.. .+..+ ++|++|+++++. ++.++. .+..+++|+.|++++ +.++.+....+. ++|++|
T Consensus 233 ~n-~l~~~~~~----~~~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 301 (477)
T 2id5_A 233 HC-NLTAVPYL----AVRHL----VYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVG-GQLAVVEPYAFRGLNYLRVL 301 (477)
T ss_dssp SS-CCCSCCHH----HHTTC----TTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCS-SCCSEECTTTBTTCTTCCEE
T ss_pred CC-cccccCHH----HhcCc----cccCeeECCCCc-CCccChhhccccccCCEEECCC-CccceECHHHhcCcccCCEE
Confidence 85 55565543 35555 888888888754 555553 467888888898887 467766554444 788888
Q ss_pred EeccCCCCCcccc-ccccCCCCCcceEecccC
Q 043667 317 EIRKCDALKSLPE-AWMCDTNSSLETLKIERC 347 (387)
Q Consensus 317 ~l~~c~~l~~l~~-~~~~~~~~~L~~L~l~~c 347 (387)
+++++ .++.++. .+..+.+ |++|+++++
T Consensus 302 ~L~~N-~l~~~~~~~~~~l~~--L~~L~l~~N 330 (477)
T 2id5_A 302 NVSGN-QLTTLEESVFHSVGN--LETLILDSN 330 (477)
T ss_dssp ECCSS-CCSCCCGGGBSCGGG--CCEEECCSS
T ss_pred ECCCC-cCceeCHhHcCCCcc--cCEEEccCC
Confidence 88885 4777764 3444566 888888875
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=6.1e-21 Score=186.86 Aligned_cols=122 Identities=13% Similarity=0.083 Sum_probs=56.6
Q ss_pred CCCcEEEEcCcCCCCCC-CccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccC
Q 043667 6 KNLEQFCISGYRGAKFP-TWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIP 82 (387)
Q Consensus 6 ~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 82 (387)
++|++|+++++.+..++ ..+.. +++|++|++++| .++.+++ ++.+++|++|+++++ .++.++.. .
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~--l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--------~ 119 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISF--LSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--------P 119 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTT--CTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--------C
T ss_pred CCcCEEECCCCCccccChhhhcc--CCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--------c
Confidence 45555555555555543 23443 555555555554 4444422 555555555555555 34444432 2
Q ss_pred CCCcceeeccccCCccccc-cCcCCCCccCCCCcceEeeccCcccccccCCCCCCc--cEEEeccC
Q 043667 83 FPRLETLRFDAMLGWEDWI-PLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPAL--EMLVIEAC 145 (387)
Q Consensus 83 ~~~L~~L~l~~~~~l~~~~-~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L--~~L~l~~~ 145 (387)
+++|++|+++++. +.... + ..+..+++|++|+++++ .+.......+++| +.|+++++
T Consensus 120 l~~L~~L~Ls~N~-l~~l~~p----~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 120 MASLRHLDLSFND-FDVLPVC----KEFGNLTKLTFLGLSAA-KFRQLDLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp CTTCSEEECCSSC-CSBCCCC----GGGGGCTTCCEEEEECS-BCCTTTTGGGTTSCEEEEEEEES
T ss_pred cccCCEEECCCCC-ccccCch----HhhcccCcccEEecCCC-ccccCchhhhhhceeeEEEeecc
Confidence 5555555555532 21111 1 12334555666666554 2221112223344 55555544
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=1.4e-20 Score=179.49 Aligned_cols=350 Identities=13% Similarity=0.105 Sum_probs=237.5
Q ss_pred cEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCC--CcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCc
Q 043667 9 EQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRL 86 (387)
Q Consensus 9 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L 86 (387)
+.++.++.....+|. + .++|++|+++++ .++.++ .++++++|++|++.++.....++... +..+++|
T Consensus 13 ~~~~c~~~~l~~lp~-l----~~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~-----~~~l~~L 81 (455)
T 3v47_A 13 YNAICINRGLHQVPE-L----PAHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT-----FRGLSSL 81 (455)
T ss_dssp TEEECCSSCCSSCCC-C----CTTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTT-----TTTCTTC
T ss_pred cccCcCCCCcccCCC-C----CCccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECccc-----ccccccC
Confidence 345666777777886 2 468999999996 666664 38999999999999995544665443 3568999
Q ss_pred ceeeccccCCccccccCcCCCCccCCCCcceEeeccCccccccc-----CCCCCCccEEEeccCcccc---c-cccCCCC
Q 043667 87 ETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTF-----PEHLPALEMLVIEACKELS---V-SVSSLPA 157 (387)
Q Consensus 87 ~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~-----~~~~~~L~~L~l~~~~~l~---~-~~~~~~~ 157 (387)
++|+++++. +....+ ..+..+++|++|+++++. +.+.. ...+++|+.|+++++.... . .+..+++
T Consensus 82 ~~L~Ls~n~-l~~~~~----~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 155 (455)
T 3v47_A 82 IILKLDYNQ-FLQLET----GAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155 (455)
T ss_dssp CEEECTTCT-TCEECT----TTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred CEEeCCCCc-cCccCh----hhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence 999999854 344433 556678999999999873 43222 3357899999999876322 2 2778899
Q ss_pred cceEEEcCccceeE-ecccccC--CCCcEEeccCCCCcccccCCC--------CCCCccccceeEEEcCCCCcccccccc
Q 043667 158 LCKLKIGGCKKVVW-RSATDHL--GSQNSVVCRDTSNQVFLAGPL--------KPQLPKLEELILSTKEQTYIWKSHDGL 226 (387)
Q Consensus 158 L~~L~i~~~~~~~~-~~~~~~~--~~L~~L~l~~~~~l~~~~~~~--------~~~l~~L~~l~L~l~~~~~~~~~~~~~ 226 (387)
|++|+++++..... +..+..+ ++|+.++++++.-. .++... ...+++|++ +.++++......+..+
T Consensus 156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~~~~~~~L~~--L~Ls~n~l~~~~~~~~ 232 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ-DMNEYWLGWEKCGNPFKNTSITT--LDLSGNGFKESMAKRF 232 (455)
T ss_dssp CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCT-TCSTTCTTHHHHCCTTTTCEEEE--EECTTSCCCHHHHHHH
T ss_pred ccEEeCCCCcccccChhhhhccccccccccccccCccc-ccchhhccccccccccccceeee--EecCCCcccccchhhh
Confidence 99999998765442 2333333 67888888876432 222111 224567777 8888876544444332
Q ss_pred cc--cCCCccEEEecCCCCcccchhhH-----HHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCC
Q 043667 227 LQ--DICSLKKLTIDWCPKLQSLVAEE-----EKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCS 299 (387)
Q Consensus 227 l~--~~~~L~~L~l~~~~~l~~~~~~~-----~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~ 299 (387)
.. ..++|+.|+++++.......... ....+..+ ..++|++|+++++.-....+..+..+++|+.|++++ +
T Consensus 233 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n 309 (455)
T 3v47_A 233 FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL--EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ-N 309 (455)
T ss_dssp HHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGG--TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTT-S
T ss_pred hccccccceeeEeeccccccccccchhhhccCcccccccc--cccCceEEEecCccccccchhhcccCCCCCEEECCC-C
Confidence 11 23789999998764332211000 00011111 226899999998753334566788999999999998 4
Q ss_pred CceecCCCCcC--CCceEEEeccCCCCCcc-ccccccCCCCCcceEecccCcccccccCC--CCCCCccEEeecCCcccc
Q 043667 300 SLVSFPEVALP--SKLKKIEIRKCDALKSL-PEAWMCDTNSSLETLKIERCRSLTYIAGV--QLPPSLKRLDIWNCDNIR 374 (387)
Q Consensus 300 ~l~~~~~~~~~--~~L~~L~l~~c~~l~~l-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~C~~l~ 374 (387)
.++.++...+. ++|++|++++|. ++.+ +..+..+++ |++|++++| .++.++.. ..+++|++|++++ ++++
T Consensus 310 ~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~--L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~ 384 (455)
T 3v47_A 310 EINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDK--LEVLDLSYN-HIRALGDQSFLGLPNLKELALDT-NQLK 384 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTT--CCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCS
T ss_pred cccccChhHhcCcccCCEEECCCCc-cCCcChhHhcCccc--CCEEECCCC-cccccChhhccccccccEEECCC-Cccc
Confidence 67777654443 899999999965 6666 456666777 999999996 77777443 5679999999999 5689
Q ss_pred cccccc--ccccCC
Q 043667 375 TLTVEE--GVQSSS 386 (387)
Q Consensus 375 ~l~~~~--~~~~~~ 386 (387)
.+|.++ +++.|+
T Consensus 385 ~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 385 SVPDGIFDRLTSLQ 398 (455)
T ss_dssp CCCTTTTTTCTTCC
T ss_pred cCCHhHhccCCccc
Confidence 998654 355543
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=5.2e-21 Score=182.07 Aligned_cols=302 Identities=17% Similarity=0.125 Sum_probs=202.7
Q ss_pred CCCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCC
Q 043667 4 PHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPF 83 (387)
Q Consensus 4 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 83 (387)
.+++|++|+++++....+| .++. +++|++|++++| .++.+| ++.+++|++|+++++ .++.++ +..+
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~-~l~~--l~~L~~L~Ls~n-~l~~~~-~~~l~~L~~L~Ls~N-~l~~~~--------~~~l 105 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT-GIEK--LTGLTKLICTSN-NITTLD-LSQNTNLTYLACDSN-KLTNLD--------VTPL 105 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT-TGGG--CTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSS-CCSCCC--------CTTC
T ss_pred HcCCCCEEEccCCCcccCh-hhcc--cCCCCEEEccCC-cCCeEc-cccCCCCCEEECcCC-CCceee--------cCCC
Confidence 3578999999999888887 4555 899999999996 677776 889999999999998 565553 3468
Q ss_pred CCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCCCccEEEeccCcccc-ccccCCCCcceEE
Q 043667 84 PRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELS-VSVSSLPALCKLK 162 (387)
Q Consensus 84 ~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~L~~L~ 162 (387)
++|++|+++++. +... .+..+++|+.|+++++ .+++.-...+++|+.|+++++..+. ..+..+++|+.|+
T Consensus 106 ~~L~~L~L~~N~-l~~l-------~~~~l~~L~~L~l~~N-~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 176 (457)
T 3bz5_A 106 TKLTYLNCDTNK-LTKL-------DVSQNPLLTYLNCARN-TLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLD 176 (457)
T ss_dssp TTCCEEECCSSC-CSCC-------CCTTCTTCCEEECTTS-CCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEE
T ss_pred CcCCEEECCCCc-CCee-------cCCCCCcCCEEECCCC-ccceeccccCCcCCEEECCCCCcccccccccCCcCCEEE
Confidence 999999998753 3332 1345889999999887 4443323457899999998885443 3577888999999
Q ss_pred EcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCC
Q 043667 163 IGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCP 242 (387)
Q Consensus 163 i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 242 (387)
++++....++ +..+++|++|+++++. +..+ ....+++|++ +.++++. ++.+| ++.+++|+.|+++++
T Consensus 177 ls~n~l~~l~--l~~l~~L~~L~l~~N~-l~~~---~l~~l~~L~~--L~Ls~N~-l~~ip---~~~l~~L~~L~l~~N- 243 (457)
T 3bz5_A 177 CSFNKITELD--VSQNKLLNRLNCDTNN-ITKL---DLNQNIQLTF--LDCSSNK-LTEID---VTPLTQLTYFDCSVN- 243 (457)
T ss_dssp CCSSCCCCCC--CTTCTTCCEEECCSSC-CSCC---CCTTCTTCSE--EECCSSC-CSCCC---CTTCTTCSEEECCSS-
T ss_pred CCCCccceec--cccCCCCCEEECcCCc-CCee---ccccCCCCCE--EECcCCc-ccccC---ccccCCCCEEEeeCC-
Confidence 9887554443 5677899999998764 2333 2456778888 8888764 44455 457889999999885
Q ss_pred CcccchhhHHHHHHhhh---hhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCC---------cC
Q 043667 243 KLQSLVAEEEKDQQQQL---CELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVA---------LP 310 (387)
Q Consensus 243 ~l~~~~~~~~~~~~~~l---~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~---------~~ 310 (387)
.+..++.. .+..+ .-...+|+.|++++|..+..+| ...+++|+.|++++|..++.++... -.
T Consensus 244 ~l~~~~~~----~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~ 317 (457)
T 3bz5_A 244 PLTELDVS----TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN 317 (457)
T ss_dssp CCSCCCCT----TCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC
T ss_pred cCCCcCHH----HCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhc
Confidence 44444322 12111 0011244455555555444444 3567888888888887666555311 11
Q ss_pred CCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccc
Q 043667 311 SKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYI 353 (387)
Q Consensus 311 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~ 353 (387)
++|++|+++++ .++.++ +..++. |+.|++++ ++++.+
T Consensus 318 ~~L~~L~L~~N-~l~~l~--l~~l~~--L~~L~l~~-N~l~~l 354 (457)
T 3bz5_A 318 PKLVYLYLNNT-ELTELD--VSHNTK--LKSLSCVN-AHIQDF 354 (457)
T ss_dssp TTCCEEECTTC-CCSCCC--CTTCTT--CSEEECCS-SCCCBC
T ss_pred ccCCEEECCCC-cccccc--cccCCc--CcEEECCC-CCCCCc
Confidence 56666666653 355553 444555 88888777 355554
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=4.1e-21 Score=184.35 Aligned_cols=288 Identities=15% Similarity=0.141 Sum_probs=220.2
Q ss_pred CCCCcEEEEcCcCCCCC-CCccCCccCCCccEEEeecCCCCCCCC--CcCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667 5 HKNLEQFCISGYRGAKF-PTWFGDSSFSNLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI 81 (387)
Q Consensus 5 ~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~l~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 81 (387)
++++++|+++++.+..+ |..+.. +++|++|++++| .++.++ .++.+++|++|+++++ .++.++... +.
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~ 101 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFAS--FPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGV-----FT 101 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTT--CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTS-----ST
T ss_pred CCCCcEEECCCCccceECHhHccC--CCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC-cCCccCccc-----cc
Confidence 46899999999998887 456666 999999999996 666664 3889999999999998 677776654 34
Q ss_pred CCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccC---CCCCCccEEEeccCcccc---ccccCC
Q 043667 82 PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFP---EHLPALEMLVIEACKELS---VSVSSL 155 (387)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~---~~~~~L~~L~l~~~~~l~---~~~~~~ 155 (387)
.+++|++|+++++. +..... ..+..+++|+.|+++++. +.+..+ ..+++|+.|+++++..-. ..+..+
T Consensus 102 ~l~~L~~L~Ls~n~-i~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 175 (477)
T 2id5_A 102 GLSNLTKLDISENK-IVILLD----YMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175 (477)
T ss_dssp TCTTCCEEECTTSC-CCEECT----TTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC
T ss_pred CCCCCCEEECCCCc-cccCCh----hHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcccChhHhccc
Confidence 68999999999754 333333 445578999999999873 332333 347899999999886322 347889
Q ss_pred CCcceEEEcCccceeEe-cccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCcc
Q 043667 156 PALCKLKIGGCKKVVWR-SATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLK 234 (387)
Q Consensus 156 ~~L~~L~i~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~ 234 (387)
++|+.|++.++....+. ..+..+++|++|+++++.....++... ....+|++ +.+.++. ++.++...++.+++|+
T Consensus 176 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~--L~l~~n~-l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC-LYGLNLTS--LSITHCN-LTAVPYLAVRHLVYLR 251 (477)
T ss_dssp TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT-TTTCCCSE--EEEESSC-CCSCCHHHHTTCTTCC
T ss_pred CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc-ccCccccE--EECcCCc-ccccCHHHhcCccccC
Confidence 99999999988665543 356778999999999988777766553 23347888 9998864 6677766678899999
Q ss_pred EEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCc-ccccCCCCCccEEEecCCCCceecCCCCcC--C
Q 043667 235 KLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL-PQSSLSLSSLREIDIYDCSSLVSFPEVALP--S 311 (387)
Q Consensus 235 ~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~ 311 (387)
+|+++++ .+..++.. .+..+ ++|++|+++++. ++.+ +..+..+++|+.|++++ +.++.++...+. +
T Consensus 252 ~L~Ls~n-~l~~~~~~----~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~ 320 (477)
T 2id5_A 252 FLNLSYN-PISTIEGS----MLHEL----LRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSG-NQLTTLEESVFHSVG 320 (477)
T ss_dssp EEECCSS-CCCEECTT----SCTTC----TTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCS-SCCSCCCGGGBSCGG
T ss_pred eeECCCC-cCCccChh----hcccc----ccCCEEECCCCc-cceECHHHhcCcccCCEEECCC-CcCceeCHhHcCCCc
Confidence 9999986 45555543 35555 899999999864 5555 55688999999999998 578888766554 7
Q ss_pred CceEEEeccCC
Q 043667 312 KLKKIEIRKCD 322 (387)
Q Consensus 312 ~L~~L~l~~c~ 322 (387)
+|++|++++++
T Consensus 321 ~L~~L~l~~N~ 331 (477)
T 2id5_A 321 NLETLILDSNP 331 (477)
T ss_dssp GCCEEECCSSC
T ss_pred ccCEEEccCCC
Confidence 99999999865
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=5.9e-21 Score=188.15 Aligned_cols=296 Identities=16% Similarity=0.150 Sum_probs=159.1
Q ss_pred CCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCC
Q 043667 30 FSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQ 107 (387)
Q Consensus 30 l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 107 (387)
+++++.++++++ .++.+|. ++.+++|++|++.++ .+..++... +..+++|++|+++++. +..... .
T Consensus 50 l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~~l~~L~~L~L~~n~-l~~~~~----~ 117 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYA-----FAYAHTIQKLYMGFNA-IRYLPP----H 117 (597)
T ss_dssp GCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTS-CCCEECTTT-----TTTCTTCCEEECCSSC-CCCCCT----T
T ss_pred CCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCC-CCCCCChHH-----hcCCCCCCEEECCCCc-CCCCCH----H
Confidence 455666666553 4555554 455666666666665 444444322 2345666666666532 333322 2
Q ss_pred CccCCCCcceEeeccCcccccccC----CCCCCccEEEeccCcccc---ccccCCCCcceEEEcCccceeEecccccCCC
Q 043667 108 GVEGFPKLRELHILRCSKLQGTFP----EHLPALEMLVIEACKELS---VSVSSLPALCKLKIGGCKKVVWRSATDHLGS 180 (387)
Q Consensus 108 ~i~~~~~L~~L~l~~~~~l~~~~~----~~~~~L~~L~l~~~~~l~---~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~ 180 (387)
.++.+++|+.|+++++ .+. .+| ..+++|+.|+++++.... ..+..+++|+.|+++++....+ .+..+++
T Consensus 118 ~~~~l~~L~~L~L~~n-~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~ 193 (597)
T 3oja_B 118 VFQNVPLLTVLVLERN-DLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPS 193 (597)
T ss_dssp TTTTCTTCCEEECCSS-CCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTT
T ss_pred HHcCCCCCCEEEeeCC-CCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--Chhhhhh
Confidence 3334566666666655 333 222 224566666666554211 2355566666666666543332 1344566
Q ss_pred CcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhh
Q 043667 181 QNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLC 260 (387)
Q Consensus 181 L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~ 260 (387)
|+.|+++++. +..++ ..+.|+. +.++++. +..++.. ..++|+.|+++++. +...+ ++..+
T Consensus 194 L~~L~l~~n~-l~~l~-----~~~~L~~--L~ls~n~-l~~~~~~---~~~~L~~L~L~~n~-l~~~~------~l~~l- 253 (597)
T 3oja_B 194 LFHANVSYNL-LSTLA-----IPIAVEE--LDASHNS-INVVRGP---VNVELTILKLQHNN-LTDTA------WLLNY- 253 (597)
T ss_dssp CSEEECCSSC-CSEEE-----CCTTCSE--EECCSSC-CCEEECS---CCSCCCEEECCSSC-CCCCG------GGGGC-
T ss_pred hhhhhcccCc-ccccc-----CCchhhe--eeccCCc-ccccccc---cCCCCCEEECCCCC-CCCCh------hhccC-
Confidence 6666666542 11111 1233444 6665543 3333332 23567777777643 33321 24444
Q ss_pred hccCCccEEEeccCCCCCCc-ccccCCCCCccEEEecCCCCceecCCCCc-CCCceEEEeccCCCCCccccccccCCCCC
Q 043667 261 ELSCRLEYLRLRYCKGLVKL-PQSSLSLSSLREIDIYDCSSLVSFPEVAL-PSKLKKIEIRKCDALKSLPEAWMCDTNSS 338 (387)
Q Consensus 261 ~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 338 (387)
++|+.|+++++. ++.+ |..+..+++|+.|++++ +.++.++.... .++|++|++++|. +..+|..+..+++
T Consensus 254 ---~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~-- 325 (597)
T 3oja_B 254 ---PGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDR-- 325 (597)
T ss_dssp ---TTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTT-SCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTT--
T ss_pred ---CCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCC-CCCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCC--
Confidence 777777777654 4433 44566777777777776 45666654332 2677777777653 6666666555566
Q ss_pred cceEecccCcccccccCCCCCCCccEEeecCCc
Q 043667 339 LETLKIERCRSLTYIAGVQLPPSLKRLDIWNCD 371 (387)
Q Consensus 339 L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~C~ 371 (387)
|+.|++++| .++.++. ..+++|++|++++++
T Consensus 326 L~~L~L~~N-~l~~~~~-~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 326 LENLYLDHN-SIVTLKL-STHHTLKNLTLSHND 356 (597)
T ss_dssp CSEEECCSS-CCCCCCC-CTTCCCSEEECCSSC
T ss_pred CCEEECCCC-CCCCcCh-hhcCCCCEEEeeCCC
Confidence 777777775 5555543 345677777777644
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=3.5e-20 Score=176.34 Aligned_cols=277 Identities=15% Similarity=0.102 Sum_probs=196.8
Q ss_pred CCCCCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667 2 LEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI 81 (387)
Q Consensus 2 ~~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 81 (387)
+..+++|++|+++++....+| ++. +++|++|++++| .++.++ ++.+++|++|+++++ .++.++ +.
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~--~~~--l~~L~~L~Ls~N-~l~~~~-~~~l~~L~~L~L~~N-~l~~l~--------~~ 124 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD--LSQ--NTNLTYLACDSN-KLTNLD-VTPLTKLTYLNCDTN-KLTKLD--------VS 124 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC--CTT--CTTCSEEECCSS-CCSCCC-CTTCTTCCEEECCSS-CCSCCC--------CT
T ss_pred hcccCCCCEEEccCCcCCeEc--ccc--CCCCCEEECcCC-CCceee-cCCCCcCCEEECCCC-cCCeec--------CC
Confidence 456789999999999988876 555 999999999996 677775 899999999999999 565554 24
Q ss_pred CCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCCCccEEEeccCccccccccCCCCcceE
Q 043667 82 PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKL 161 (387)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L 161 (387)
.+++|++|+++++. +... .+..+++|+.|+++++..+...-...+++|+.|+++++..-...+..+++|+.|
T Consensus 125 ~l~~L~~L~l~~N~-l~~l-------~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L 196 (457)
T 3bz5_A 125 QNPLLTYLNCARNT-LTEI-------DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRL 196 (457)
T ss_dssp TCTTCCEEECTTSC-CSCC-------CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEE
T ss_pred CCCcCCEEECCCCc-ccee-------ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceeccccCCCCCEE
Confidence 68999999999753 3222 134588999999998855542223457899999999886443447788999999
Q ss_pred EEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCc--------
Q 043667 162 KIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSL-------- 233 (387)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L-------- 233 (387)
+++++....+ .+..+++|++|+++++. +..++ ...+++|+. +.++++. ++.++.. .+++|
T Consensus 197 ~l~~N~l~~~--~l~~l~~L~~L~Ls~N~-l~~ip---~~~l~~L~~--L~l~~N~-l~~~~~~---~l~~L~~L~l~~n 264 (457)
T 3bz5_A 197 NCDTNNITKL--DLNQNIQLTFLDCSSNK-LTEID---VTPLTQLTY--FDCSVNP-LTELDVS---TLSKLTTLHCIQT 264 (457)
T ss_dssp ECCSSCCSCC--CCTTCTTCSEEECCSSC-CSCCC---CTTCTTCSE--EECCSSC-CSCCCCT---TCTTCCEEECTTC
T ss_pred ECcCCcCCee--ccccCCCCCEEECcCCc-ccccC---ccccCCCCE--EEeeCCc-CCCcCHH---HCCCCCEEeccCC
Confidence 9988764443 35678999999998764 33444 456778888 8888764 4444433 34444
Q ss_pred --cEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCccc--------ccCCCCCccEEEecCCCCcee
Q 043667 234 --KKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ--------SSLSLSSLREIDIYDCSSLVS 303 (387)
Q Consensus 234 --~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~--------~~~~~~~L~~L~l~~c~~l~~ 303 (387)
+.|++++|...+.++. .. +++|+.|++++|..+..+|. .+..+++|+.|++++ +.++.
T Consensus 265 ~L~~L~l~~n~~~~~~~~-------~~----l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~-N~l~~ 332 (457)
T 3bz5_A 265 DLLEIDLTHNTQLIYFQA-------EG----CRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN-TELTE 332 (457)
T ss_dssp CCSCCCCTTCTTCCEEEC-------TT----CTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT-CCCSC
T ss_pred CCCEEECCCCccCCcccc-------cc----cccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCC-Ccccc
Confidence 4555555554444432 12 38999999999876665543 245667888888887 56776
Q ss_pred cCCCCcCCCceEEEeccCCCCCcc
Q 043667 304 FPEVALPSKLKKIEIRKCDALKSL 327 (387)
Q Consensus 304 ~~~~~~~~~L~~L~l~~c~~l~~l 327 (387)
++ ....++|+.|+++++ .++++
T Consensus 333 l~-l~~l~~L~~L~l~~N-~l~~l 354 (457)
T 3bz5_A 333 LD-VSHNTKLKSLSCVNA-HIQDF 354 (457)
T ss_dssp CC-CTTCTTCSEEECCSS-CCCBC
T ss_pred cc-cccCCcCcEEECCCC-CCCCc
Confidence 64 222389999999874 46554
No 34
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=3.3e-19 Score=169.47 Aligned_cols=294 Identities=20% Similarity=0.192 Sum_probs=161.3
Q ss_pred CCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCc
Q 043667 7 NLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRL 86 (387)
Q Consensus 7 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L 86 (387)
++++|+++++....+|.. .++|++|+++++ .++.+|. .+++|++|+++++ .+..++. ..++|
T Consensus 72 ~l~~L~l~~~~l~~lp~~-----~~~L~~L~l~~n-~l~~lp~--~~~~L~~L~l~~n-~l~~l~~---------~~~~L 133 (454)
T 1jl5_A 72 QAHELELNNLGLSSLPEL-----PPHLESLVASCN-SLTELPE--LPQSLKSLLVDNN-NLKALSD---------LPPLL 133 (454)
T ss_dssp TCSEEECTTSCCSCCCSC-----CTTCSEEECCSS-CCSSCCC--CCTTCCEEECCSS-CCSCCCS---------CCTTC
T ss_pred CCCEEEecCCccccCCCC-----cCCCCEEEccCC-cCCcccc--ccCCCcEEECCCC-ccCcccC---------CCCCC
Confidence 356777777776666652 356777777764 5555664 2467777777776 4444332 12578
Q ss_pred ceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCCCccEEEeccCcccc-ccccCCCCcceEEEcC
Q 043667 87 ETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELS-VSVSSLPALCKLKIGG 165 (387)
Q Consensus 87 ~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~L~~L~i~~ 165 (387)
++|+++++. +... ..+..+++|++|+++++ .++ .+|...++|+.|+++++.... ..++.+++|++|++++
T Consensus 134 ~~L~L~~n~-l~~l------p~~~~l~~L~~L~l~~N-~l~-~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 134 EYLGVSNNQ-LEKL------PELQNSSFLKIIDVDNN-SLK-KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADN 204 (454)
T ss_dssp CEEECCSSC-CSSC------CCCTTCTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCS
T ss_pred CEEECcCCC-CCCC------cccCCCCCCCEEECCCC-cCc-ccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCC
Confidence 888887642 3222 23445778888888776 454 466667788888887765221 2466777888888877
Q ss_pred ccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcc
Q 043667 166 CKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQ 245 (387)
Q Consensus 166 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 245 (387)
+....++. ..++|++|+++++. +..++. ...+++|++ +.++++. +..+|. .+++|++|+++++ .+.
T Consensus 205 N~l~~l~~---~~~~L~~L~l~~n~-l~~lp~--~~~l~~L~~--L~l~~N~-l~~l~~----~~~~L~~L~l~~N-~l~ 270 (454)
T 1jl5_A 205 NSLKKLPD---LPLSLESIVAGNNI-LEELPE--LQNLPFLTT--IYADNNL-LKTLPD----LPPSLEALNVRDN-YLT 270 (454)
T ss_dssp SCCSSCCC---CCTTCCEEECCSSC-CSSCCC--CTTCTTCCE--EECCSSC-CSSCCS----CCTTCCEEECCSS-CCS
T ss_pred CcCCcCCC---CcCcccEEECcCCc-CCcccc--cCCCCCCCE--EECCCCc-CCcccc----cccccCEEECCCC-ccc
Confidence 65433322 23577777777763 334442 346666776 7776643 333443 2356777777764 333
Q ss_pred cchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCC
Q 043667 246 SLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALK 325 (387)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~ 325 (387)
.++.. +++|++|++++|. ++.++.. .++|+.|++++ +.++.++ ..+++|++|+++++ .++
T Consensus 271 ~l~~~------------~~~L~~L~ls~N~-l~~l~~~---~~~L~~L~l~~-N~l~~i~--~~~~~L~~L~Ls~N-~l~ 330 (454)
T 1jl5_A 271 DLPEL------------PQSLTFLDVSENI-FSGLSEL---PPNLYYLNASS-NEIRSLC--DLPPSLEELNVSNN-KLI 330 (454)
T ss_dssp CCCCC------------CTTCCEEECCSSC-CSEESCC---CTTCCEEECCS-SCCSEEC--CCCTTCCEEECCSS-CCS
T ss_pred ccCcc------------cCcCCEEECcCCc-cCcccCc---CCcCCEEECcC-CcCCccc--CCcCcCCEEECCCC-ccc
Confidence 33321 1566666666543 4433321 13455555554 2344333 12234555555442 244
Q ss_pred ccccccccCCCCCcceEecccCcccccccCCCCCCCccEEeecC
Q 043667 326 SLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWN 369 (387)
Q Consensus 326 ~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~ 369 (387)
.+|.. +++ |++|++++| +++.++. .+++|++|++++
T Consensus 331 ~lp~~---~~~--L~~L~L~~N-~l~~lp~--~l~~L~~L~L~~ 366 (454)
T 1jl5_A 331 ELPAL---PPR--LERLIASFN-HLAEVPE--LPQNLKQLHVEY 366 (454)
T ss_dssp CCCCC---CTT--CCEEECCSS-CCSCCCC--CCTTCCEEECCS
T ss_pred ccccc---CCc--CCEEECCCC-ccccccc--hhhhccEEECCC
Confidence 44433 233 555555543 3444443 334455555544
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=9.4e-20 Score=173.25 Aligned_cols=259 Identities=21% Similarity=0.178 Sum_probs=112.9
Q ss_pred CCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecC-------------------CCCCCCCCcCCcCCCcEEEecCCC
Q 043667 5 HKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYC-------------------GMCPTLPSVGQLPSLKHLAVCGMT 65 (387)
Q Consensus 5 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c-------------------~~~~~l~~~~~l~~L~~L~l~~~~ 65 (387)
+++|++|+++++....+|.. +++|++|++++| ..++.+|.++.+++|++|+++++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~-----~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N- 163 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL-----PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN- 163 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC-----CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS-
T ss_pred cCCCCEEEccCCcCCccccc-----cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCcccCCCCCCCEEECCCC-
Confidence 35777777777777666643 244555555543 13333444444444444444444
Q ss_pred CceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCCCccEEEeccC
Q 043667 66 SVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEAC 145 (387)
Q Consensus 66 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~ 145 (387)
.++.++. ..++|++|+++++. +... ..+..+++|+.|+++++ .+. .+|...++|+.|+++++
T Consensus 164 ~l~~lp~---------~~~~L~~L~L~~n~-l~~l------~~~~~l~~L~~L~l~~N-~l~-~l~~~~~~L~~L~l~~n 225 (454)
T 1jl5_A 164 SLKKLPD---------LPPSLEFIAAGNNQ-LEEL------PELQNLPFLTAIYADNN-SLK-KLPDLPLSLESIVAGNN 225 (454)
T ss_dssp CCSCCCC---------CCTTCCEEECCSSC-CSSC------CCCTTCTTCCEEECCSS-CCS-SCCCCCTTCCEEECCSS
T ss_pred cCcccCC---------CcccccEEECcCCc-CCcC------ccccCCCCCCEEECCCC-cCC-cCCCCcCcccEEECcCC
Confidence 2322221 12344444444421 1111 11223455555555444 222 23443445555555544
Q ss_pred cccc-ccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccc
Q 043667 146 KELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHD 224 (387)
Q Consensus 146 ~~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~ 224 (387)
.... ..++.+++|++|+++++....++. .+++|++|+++++. +..++ ..+++|++ +.++++. +..++.
T Consensus 226 ~l~~lp~~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~-l~~l~----~~~~~L~~--L~ls~N~-l~~l~~ 294 (454)
T 1jl5_A 226 ILEELPELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNY-LTDLP----ELPQSLTF--LDVSENI-FSGLSE 294 (454)
T ss_dssp CCSSCCCCTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSC-CSCCC----CCCTTCCE--EECCSSC-CSEESC
T ss_pred cCCcccccCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCc-ccccC----cccCcCCE--EECcCCc-cCcccC
Confidence 3111 124444555555555443222221 12455555555432 22221 11234444 4444432 222221
Q ss_pred cccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceec
Q 043667 225 GLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSF 304 (387)
Q Consensus 225 ~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~ 304 (387)
..++|++|+++++ .+..++. .+++|++|+++++ .++.+|.. +++|+.|+++++ .++.+
T Consensus 295 ----~~~~L~~L~l~~N-~l~~i~~------------~~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~L~~N-~l~~l 352 (454)
T 1jl5_A 295 ----LPPNLYYLNASSN-EIRSLCD------------LPPSLEELNVSNN-KLIELPAL---PPRLERLIASFN-HLAEV 352 (454)
T ss_dssp ----CCTTCCEEECCSS-CCSEECC------------CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSCC
T ss_pred ----cCCcCCEEECcCC-cCCcccC------------CcCcCCEEECCCC-cccccccc---CCcCCEEECCCC-ccccc
Confidence 1234555555543 2222211 0135566666553 34444432 355666666553 45555
Q ss_pred CCCCcCCCceEEEeccCC
Q 043667 305 PEVALPSKLKKIEIRKCD 322 (387)
Q Consensus 305 ~~~~~~~~L~~L~l~~c~ 322 (387)
+. ..++|++|+++++.
T Consensus 353 p~--~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 353 PE--LPQNLKQLHVEYNP 368 (454)
T ss_dssp CC--CCTTCCEEECCSSC
T ss_pred cc--hhhhccEEECCCCC
Confidence 54 33566666665543
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=5.4e-20 Score=180.11 Aligned_cols=331 Identities=13% Similarity=0.077 Sum_probs=210.0
Q ss_pred CCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCC--CcCCcCCCcEEEecCCCCceEeCccccCCCcccCCC
Q 043667 7 NLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFP 84 (387)
Q Consensus 7 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 84 (387)
..++++++++....+|..+ .++|++|++++| .++.++ .++.+++|++|+++++ .++.++... +..++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~----~~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-----~~~l~ 100 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDL----PPRTKALSLSQN-SISELRMPDISFLSELRVLRLSHN-RIRSLDFHV-----FLFNQ 100 (562)
T ss_dssp -CCEEECTTSCCCSCCTTS----CTTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTT-----TTTCT
T ss_pred CCcEEEcCCCCCccCCCCC----CCCcCEEECCCC-CccccChhhhccCCCccEEECCCC-CCCcCCHHH-----hCCCC
Confidence 4467777777777777643 367888888775 566665 3777888888888877 566664433 24577
Q ss_pred CcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccC---CCCCCccEEEeccCccccccccCCCCc--c
Q 043667 85 RLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFP---EHLPALEMLVIEACKELSVSVSSLPAL--C 159 (387)
Q Consensus 85 ~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~L--~ 159 (387)
+|++|+++++. +..... . .+++|++|+++++.-.....| ..+++|+.|+++++..-...+..+++| +
T Consensus 101 ~L~~L~Ls~N~-l~~lp~----~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~ 172 (562)
T 3a79_B 101 DLEYLDVSHNR-LQNISC----C---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLS 172 (562)
T ss_dssp TCCEEECTTSC-CCEECS----C---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEE
T ss_pred CCCEEECCCCc-CCccCc----c---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceee
Confidence 78888887643 333322 1 477788888877632211122 236777888877765333334444444 6
Q ss_pred eEEEcCccc--ee-----Eec----------------------ccccC--------------------------------
Q 043667 160 KLKIGGCKK--VV-----WRS----------------------ATDHL-------------------------------- 178 (387)
Q Consensus 160 ~L~i~~~~~--~~-----~~~----------------------~~~~~-------------------------------- 178 (387)
.|+++++.. .. +.. ....+
T Consensus 173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~ 252 (562)
T 3a79_B 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252 (562)
T ss_dssp EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence 666655432 00 000 00001
Q ss_pred -----------------------CCCcEEeccCCCCcccccCC-------------------------------------
Q 043667 179 -----------------------GSQNSVVCRDTSNQVFLAGP------------------------------------- 198 (387)
Q Consensus 179 -----------------------~~L~~L~l~~~~~l~~~~~~------------------------------------- 198 (387)
++|++|+++++.-...++..
T Consensus 253 ~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~ 332 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332 (562)
T ss_dssp EEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCC
T ss_pred EEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCc
Confidence 13444444333211011110
Q ss_pred --------------C-CCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhcc
Q 043667 199 --------------L-KPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELS 263 (387)
Q Consensus 199 --------------~-~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~ 263 (387)
. +..+++|++ +.++++......+.. ++.+++|++|+++++ .+..++.. +..+..+
T Consensus 333 L~~L~l~~n~~~~~~~~~~l~~L~~--L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~--~~~~~~l---- 402 (562)
T 3a79_B 333 IKMLSISDTPFIHMVCPPSPSSFTF--LNFTQNVFTDSVFQG-CSTLKRLQTLILQRN-GLKNFFKV--ALMTKNM---- 402 (562)
T ss_dssp CSEEEEESSCCCCCCCCSSCCCCCE--EECCSSCCCTTTTTT-CCSCSSCCEEECCSS-CCCBTTHH--HHTTTTC----
T ss_pred ceEEEccCCCcccccCccCCCCceE--EECCCCccccchhhh-hcccCCCCEEECCCC-CcCCcccc--hhhhcCC----
Confidence 0 156677888 888887654445544 678999999999985 55554321 1135555
Q ss_pred CCccEEEeccCCCCCC-cccc-cCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcce
Q 043667 264 CRLEYLRLRYCKGLVK-LPQS-SLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLET 341 (387)
Q Consensus 264 ~~L~~L~l~~c~~l~~-~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~ 341 (387)
++|++|+++++. ++. +|.. +..+++|+.|+++++ .++......++++|++|+++++ .++.+|..+..+++ |++
T Consensus 403 ~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~--L~~ 477 (562)
T 3a79_B 403 SSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSN-MLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQA--LQE 477 (562)
T ss_dssp TTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSS-CCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCC--CSE
T ss_pred CCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCC-CCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCC--CCE
Confidence 999999999865 554 7764 678899999999995 5543333344479999999986 68999987776777 999
Q ss_pred EecccCcccccccCC--CCCCCccEEeecCCcc
Q 043667 342 LKIERCRSLTYIAGV--QLPPSLKRLDIWNCDN 372 (387)
Q Consensus 342 L~l~~c~~l~~~~~~--~~~~~L~~L~l~~C~~ 372 (387)
|+++++ +++.++.. ..+++|++|++++++-
T Consensus 478 L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 478 LNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp EECCSS-CCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred EECCCC-CCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 999995 88888875 5678999999998663
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=2.4e-20 Score=174.29 Aligned_cols=302 Identities=14% Similarity=0.156 Sum_probs=225.4
Q ss_pred CCCCcEEEEcCcCCCCCCCcc-CCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667 5 HKNLEQFCISGYRGAKFPTWF-GDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI 81 (387)
Q Consensus 5 ~~~L~~L~l~~~~~~~~p~~~-~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 81 (387)
.+++++++++++....+|..+ .. +++|++|+++++ .++.++. ++.+++|++|++.++ .+..++... +.
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~--l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~ 114 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDS--FRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHV-----FQ 114 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHH--CCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTT-----TT
T ss_pred cCCceEEEecCCchhhCChhHhcc--cccCcEEECCCC-cccccChhhccCCCCcCEEECCCC-CCCcCCHHH-----hc
Confidence 479999999999988888754 44 899999999996 6777763 889999999999999 666666543 34
Q ss_pred CCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccC---CCCCCccEEEeccCccccccccCCCCc
Q 043667 82 PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFP---EHLPALEMLVIEACKELSVSVSSLPAL 158 (387)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~L 158 (387)
.+++|++|++.++ .+..... ..+..+++|++|+++++ .+.+..+ ..+++|+.|+++++..-...+..+++|
T Consensus 115 ~l~~L~~L~L~~n-~l~~l~~----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L 188 (390)
T 3o6n_A 115 NVPLLTVLVLERN-DLSSLPR----GIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 188 (390)
T ss_dssp TCTTCCEEECCSS-CCCCCCT----TTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTC
T ss_pred CCCCCCEEECCCC-ccCcCCH----HHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCcccccccccc
Confidence 6899999999985 3444332 23356899999999987 3442333 347899999999987555567788999
Q ss_pred ceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEe
Q 043667 159 CKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTI 238 (387)
Q Consensus 159 ~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 238 (387)
+.++++++....+ ...++|++|+++++. +..++.. ..++|++ +.+.++.. +..+ .++.+++|++|++
T Consensus 189 ~~L~l~~n~l~~~----~~~~~L~~L~l~~n~-l~~~~~~---~~~~L~~--L~l~~n~l-~~~~--~l~~l~~L~~L~L 255 (390)
T 3o6n_A 189 FHANVSYNLLSTL----AIPIAVEELDASHNS-INVVRGP---VNVELTI--LKLQHNNL-TDTA--WLLNYPGLVEVDL 255 (390)
T ss_dssp SEEECCSSCCSEE----ECCSSCSEEECCSSC-CCEEECC---CCSSCCE--EECCSSCC-CCCG--GGGGCTTCSEEEC
T ss_pred ceeeccccccccc----CCCCcceEEECCCCe-eeecccc---ccccccE--EECCCCCC-cccH--HHcCCCCccEEEC
Confidence 9999998754332 235789999999864 3333332 3467777 88888754 3332 3678999999999
Q ss_pred cCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCC-cCCCceEEE
Q 043667 239 DWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVA-LPSKLKKIE 317 (387)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~L~~L~ 317 (387)
+++ .+..+.+. .+..+ ++|++|+++++ .++.++.....+++|+.|+++++ .++.++... ..++|++|+
T Consensus 256 s~n-~l~~~~~~----~~~~l----~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 256 SYN-ELEKIMYH----PFVKM----QRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLY 324 (390)
T ss_dssp CSS-CCCEEESG----GGTTC----SSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEE
T ss_pred CCC-cCCCcChh----Hcccc----ccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEE
Confidence 996 45544333 45655 99999999985 57888877788999999999995 777776432 128999999
Q ss_pred eccCCCCCccccccccCCCCCcceEecccCcccc
Q 043667 318 IRKCDALKSLPEAWMCDTNSSLETLKIERCRSLT 351 (387)
Q Consensus 318 l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~ 351 (387)
+++|. ++.++ +..++. |++|+++++ .++
T Consensus 325 L~~N~-i~~~~--~~~~~~--L~~L~l~~N-~~~ 352 (390)
T 3o6n_A 325 LDHNS-IVTLK--LSTHHT--LKNLTLSHN-DWD 352 (390)
T ss_dssp CCSSC-CCCCC--CCTTCC--CSEEECCSS-CEE
T ss_pred CCCCc-cceeC--chhhcc--CCEEEcCCC-Ccc
Confidence 99865 77776 344666 999999995 444
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=4.2e-19 Score=176.12 Aligned_cols=153 Identities=20% Similarity=0.230 Sum_probs=104.3
Q ss_pred CCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCC-c
Q 043667 202 QLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK-L 280 (387)
Q Consensus 202 ~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~-~ 280 (387)
.++.|+. +.+..+......+...+..+++++.++++.+ .+....+. .+..+ ++++.|+++++..... .
T Consensus 418 ~l~~L~~--l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n-~l~~~~~~----~~~~~----~~L~~L~Ls~N~~~~~~~ 486 (635)
T 4g8a_A 418 GLEQLEH--LDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNG----IFNGL----SSLEVLKMAGNSFQENFL 486 (635)
T ss_dssp TCTTCCE--EECTTSEEESTTSSCTTTTCTTCCEEECTTS-CCEECCTT----TTTTC----TTCCEEECTTCEEGGGEE
T ss_pred ccccccc--hhhhhcccccccccccccccccccccccccc-cccccccc----ccccc----hhhhhhhhhhcccccccC
Confidence 4455555 5555544444444444566777888888764 33333222 23333 8899999988765544 4
Q ss_pred ccccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCcccc-ccccCCCCCcceEecccCcccccccCC-
Q 043667 281 PQSSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPE-AWMCDTNSSLETLKIERCRSLTYIAGV- 356 (387)
Q Consensus 281 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~- 356 (387)
|..+..+++|+.|++++| .++.++...+. ++|++|+++++ .++.++. .+..+++ |++|+++++ +++.++..
T Consensus 487 ~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~--L~~L~Ls~N-~l~~~~~~~ 561 (635)
T 4g8a_A 487 PDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNS--LQVLDYSLN-HIMTSKKQE 561 (635)
T ss_dssp CSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTT--CCEEECTTS-CCCBCCSSC
T ss_pred chhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCC--CCEEECCCC-cCCCCCHHH
Confidence 556788899999999984 78888765554 89999999985 5777754 4555677 999999994 78777665
Q ss_pred --CCCCCccEEeecCC
Q 043667 357 --QLPPSLKRLDIWNC 370 (387)
Q Consensus 357 --~~~~~L~~L~l~~C 370 (387)
..+++|++|++++.
T Consensus 562 l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 562 LQHFPSSLAFLNLTQN 577 (635)
T ss_dssp TTCCCTTCCEEECTTC
T ss_pred HHhhhCcCCEEEeeCC
Confidence 23468999999863
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=1.1e-19 Score=179.20 Aligned_cols=299 Identities=14% Similarity=0.162 Sum_probs=221.5
Q ss_pred CCCCcEEEEcCcCCCCCCCcc-CCccCCCccEEEeecCCCCCCCC--CcCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667 5 HKNLEQFCISGYRGAKFPTWF-GDSSFSNLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI 81 (387)
Q Consensus 5 ~~~L~~L~l~~~~~~~~p~~~-~~~~l~~L~~L~l~~c~~~~~l~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 81 (387)
..+++.++++++....+|..+ .. +++|++|++++| .+..++ .++.+++|++|++.++ .+..++... +.
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~ 120 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDS--FRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHV-----FQ 120 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHH--CCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTT-----TT
T ss_pred CCCceEEEeeCCCCCCcCHHHHcc--CCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHH-----Hc
Confidence 478999999999888887754 33 899999999996 677766 4889999999999999 577676554 34
Q ss_pred CCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCC---CCCCccEEEeccCccccccccCCCCc
Q 043667 82 PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPE---HLPALEMLVIEACKELSVSVSSLPAL 158 (387)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~L 158 (387)
.+++|++|+++++ .+..... ..+..+++|+.|+++++ .+.+..|. .+++|+.|+++++......+..+++|
T Consensus 121 ~l~~L~~L~L~~n-~l~~l~~----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 194 (597)
T 3oja_B 121 NVPLLTVLVLERN-DLSSLPR----GIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 194 (597)
T ss_dssp TCTTCCEEECCSS-CCCCCCT----TTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTC
T ss_pred CCCCCCEEEeeCC-CCCCCCH----HHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhh
Confidence 6899999999986 3444432 33456899999999987 44434443 46899999999987555567788999
Q ss_pred ceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEe
Q 043667 159 CKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTI 238 (387)
Q Consensus 159 ~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 238 (387)
+.|+++++....+ ...++|+.|+++++. +..++.. ..++|+. |.+.++... .. ..++.+++|++|++
T Consensus 195 ~~L~l~~n~l~~l----~~~~~L~~L~ls~n~-l~~~~~~---~~~~L~~--L~L~~n~l~-~~--~~l~~l~~L~~L~L 261 (597)
T 3oja_B 195 FHANVSYNLLSTL----AIPIAVEELDASHNS-INVVRGP---VNVELTI--LKLQHNNLT-DT--AWLLNYPGLVEVDL 261 (597)
T ss_dssp SEEECCSSCCSEE----ECCTTCSEEECCSSC-CCEEECS---CCSCCCE--EECCSSCCC-CC--GGGGGCTTCSEEEC
T ss_pred hhhhcccCccccc----cCCchhheeeccCCc-ccccccc---cCCCCCE--EECCCCCCC-CC--hhhccCCCCCEEEC
Confidence 9999988754332 345789999999864 3334333 2356777 888877543 32 33678999999999
Q ss_pred cCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCc-CCCceEEE
Q 043667 239 DWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVAL-PSKLKKIE 317 (387)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~ 317 (387)
+++ .+..+.+. .+..+ ++|++|++++| .++.++..+..+++|+.|++++| .++.++.... .++|+.|+
T Consensus 262 s~N-~l~~~~~~----~~~~l----~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 262 SYN-ELEKIMYH----PFVKM----QRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLY 330 (597)
T ss_dssp CSS-CCCEEESG----GGTTC----SSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEE
T ss_pred CCC-ccCCCCHH----HhcCc----cCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEE
Confidence 986 44444333 35655 99999999985 57888887888999999999984 6777664321 28999999
Q ss_pred eccCCCCCccccccccCCCCCcceEecccC
Q 043667 318 IRKCDALKSLPEAWMCDTNSSLETLKIERC 347 (387)
Q Consensus 318 l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c 347 (387)
+++|. +..++ +..+++ |+.|+++++
T Consensus 331 L~~N~-l~~~~--~~~~~~--L~~L~l~~N 355 (597)
T 3oja_B 331 LDHNS-IVTLK--LSTHHT--LKNLTLSHN 355 (597)
T ss_dssp CCSSC-CCCCC--CCTTCC--CSEEECCSS
T ss_pred CCCCC-CCCcC--hhhcCC--CCEEEeeCC
Confidence 99865 66665 334566 999999995
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=1.5e-18 Score=158.31 Aligned_cols=213 Identities=15% Similarity=0.196 Sum_probs=113.9
Q ss_pred CCCCcceEeeccCcccccccCCC-CCCccEEEeccCcccc---ccccCCCCcceEEEcCcccee---EecccccCCCCcE
Q 043667 111 GFPKLRELHILRCSKLQGTFPEH-LPALEMLVIEACKELS---VSVSSLPALCKLKIGGCKKVV---WRSATDHLGSQNS 183 (387)
Q Consensus 111 ~~~~L~~L~l~~~~~l~~~~~~~-~~~L~~L~l~~~~~l~---~~~~~~~~L~~L~i~~~~~~~---~~~~~~~~~~L~~ 183 (387)
.+++|++|+++++ .++ .+|.. +++|+.|+++++..-. ..+..+++|+.|+++++.... ....+..+++|++
T Consensus 98 ~l~~L~~L~Ls~n-~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 98 PLVKLERLYLSKN-QLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp TCTTCCEEECCSS-CCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred CCCCCCEEECCCC-cCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 3555555555544 222 23322 3455566555543211 235566677777776654321 2234455677777
Q ss_pred EeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhcc
Q 043667 184 VVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELS 263 (387)
Q Consensus 184 L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~ 263 (387)
|+++++. +..++... .++|++ +.++++. ++.++...++.+++|++|+++++ .+..+++. .+..+
T Consensus 176 L~l~~n~-l~~l~~~~---~~~L~~--L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~----~~~~l---- 239 (330)
T 1xku_A 176 IRIADTN-ITTIPQGL---PPSLTE--LHLDGNK-ITKVDAASLKGLNNLAKLGLSFN-SISAVDNG----SLANT---- 239 (330)
T ss_dssp EECCSSC-CCSCCSSC---CTTCSE--EECTTSC-CCEECTGGGTTCTTCCEEECCSS-CCCEECTT----TGGGS----
T ss_pred EECCCCc-cccCCccc---cccCCE--EECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCceeChh----hccCC----
Confidence 7776543 22333221 245555 6666554 44343334666777888888774 34444332 24444
Q ss_pred CCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcC--------CCceEEEeccCCCCCc---cccccc
Q 043667 264 CRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALP--------SKLKKIEIRKCDALKS---LPEAWM 332 (387)
Q Consensus 264 ~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--------~~L~~L~l~~c~~l~~---l~~~~~ 332 (387)
++|++|++++| .++.+|.++..+++|+.|++++ +.++.++...+. ++++.+++.+++ +.. .|..+.
T Consensus 240 ~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~ 316 (330)
T 1xku_A 240 PHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQPSTFR 316 (330)
T ss_dssp TTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSCGGGGT
T ss_pred CCCCEEECCCC-cCccCChhhccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCc-ccccccCccccc
Confidence 77888888775 4667777777777888888877 466666544431 455566666543 221 123333
Q ss_pred cCCCCCcceEeccc
Q 043667 333 CDTNSSLETLKIER 346 (387)
Q Consensus 333 ~~~~~~L~~L~l~~ 346 (387)
+... ++.+++++
T Consensus 317 ~~~~--l~~l~L~~ 328 (330)
T 1xku_A 317 CVYV--RAAVQLGN 328 (330)
T ss_dssp TCCC--GGGEEC--
T ss_pred cccc--eeEEEecc
Confidence 3344 55555554
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=2.4e-18 Score=170.61 Aligned_cols=127 Identities=17% Similarity=0.172 Sum_probs=88.9
Q ss_pred CCCCcEEEEcCcCCCCCC-CccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667 5 HKNLEQFCISGYRGAKFP-TWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI 81 (387)
Q Consensus 5 ~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 81 (387)
|+++++|+++++.+..+| .++.. +++|++|++++| .++.+++ ++.+++|++|+++++ .++.++...| .
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~--l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f-----~ 121 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAF-----S 121 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGG-----T
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhC--CCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHh-----c
Confidence 357899999999888885 45666 899999999986 7777775 788999999999998 6788876543 4
Q ss_pred CCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccC---CCCCCccEEEeccC
Q 043667 82 PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFP---EHLPALEMLVIEAC 145 (387)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~---~~~~~L~~L~l~~~ 145 (387)
.+++|++|++.++ .++.... ..++.+++|++|+++++.-.....| ..+++|+.|+++++
T Consensus 122 ~L~~L~~L~Ls~N-~l~~l~~----~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 122 GLSSLQKLVAVET-NLASLEN----FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp TCTTCCEEECTTS-CCCCSTT----CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC-cCCCCCh----hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 5788888888875 3333332 3344577788887776532111222 23566777776654
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=1.7e-18 Score=158.19 Aligned_cols=280 Identities=16% Similarity=0.125 Sum_probs=143.3
Q ss_pred CccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCccC
Q 043667 32 NLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEG 111 (387)
Q Consensus 32 ~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~ 111 (387)
+++.++++++ .++.+|. .-.++|++|++.++ .+..++... +..+++|++|++.++. +..... ..+..
T Consensus 34 ~l~~l~~~~~-~l~~ip~-~~~~~l~~L~l~~n-~i~~~~~~~-----~~~l~~L~~L~L~~n~-l~~~~~----~~~~~ 100 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPK-EISPDTTLLDLQNN-DISELRKDD-----FKGLQHLYALVLVNNK-ISKIHE----KAFSP 100 (332)
T ss_dssp ETTEEECCSS-CCSSCCS-CCCTTCCEEECCSS-CCCEECTTT-----TTTCTTCCEEECCSSC-CCEECG----GGSTT
T ss_pred cCCEEECCCC-CccccCC-CCCCCCeEEECCCC-cCCccCHhH-----hhCCCCCcEEECCCCc-cCccCH----hHhhC
Confidence 4666666653 4555554 11356666666666 444444322 2345666666666532 333322 33445
Q ss_pred CCCcceEeeccCcccccccCCC-CCCccEEEeccCcc--cc-ccccCCCCcceEEEcCcccee---EecccccCCCCcEE
Q 043667 112 FPKLRELHILRCSKLQGTFPEH-LPALEMLVIEACKE--LS-VSVSSLPALCKLKIGGCKKVV---WRSATDHLGSQNSV 184 (387)
Q Consensus 112 ~~~L~~L~l~~~~~l~~~~~~~-~~~L~~L~l~~~~~--l~-~~~~~~~~L~~L~i~~~~~~~---~~~~~~~~~~L~~L 184 (387)
+++|++|+++++ .+. .+|.. +++|+.|+++++.. +. ..+..+++|+.|+++++.... .+..+..+ +|++|
T Consensus 101 l~~L~~L~L~~n-~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 101 LRKLQKLYISKN-HLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177 (332)
T ss_dssp CTTCCEEECCSS-CCC-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred cCCCCEEECCCC-cCC-ccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence 667777777665 333 34332 35666776666542 11 235667777777777654321 12222333 66777
Q ss_pred eccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccC
Q 043667 185 VCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSC 264 (387)
Q Consensus 185 ~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~ 264 (387)
+++++. +..++... .++|++ +.++++. +..++...+..+++|++|+++++ .+..+++. .+..+ +
T Consensus 178 ~l~~n~-l~~l~~~~---~~~L~~--L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~----~~~~l----~ 241 (332)
T 2ft3_A 178 RISEAK-LTGIPKDL---PETLNE--LHLDHNK-IQAIELEDLLRYSKLYRLGLGHN-QIRMIENG----SLSFL----P 241 (332)
T ss_dssp BCCSSB-CSSCCSSS---CSSCSC--CBCCSSC-CCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTT----GGGGC----T
T ss_pred ECcCCC-CCccCccc---cCCCCE--EECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCCcCChh----HhhCC----C
Confidence 766543 23333221 144555 5555543 33333333556677777777764 44444332 24444 6
Q ss_pred CccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcC--------CCceEEEeccCCCC--CccccccccC
Q 043667 265 RLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALP--------SKLKKIEIRKCDAL--KSLPEAWMCD 334 (387)
Q Consensus 265 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--------~~L~~L~l~~c~~l--~~l~~~~~~~ 334 (387)
+|++|+++++ .++.+|..+..+++|+.|++++ +.++.++...+. ++|+.|++.+++.. ...+..+..+
T Consensus 242 ~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l 319 (332)
T 2ft3_A 242 TLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319 (332)
T ss_dssp TCCEEECCSS-CCCBCCTTGGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred CCCEEECCCC-cCeecChhhhcCccCCEEECCC-CCCCccChhHccccccccccccccceEeecCcccccccCccccccc
Confidence 7777777764 4666666666777777777776 456665543321 34555555554421 1122233334
Q ss_pred CCCCcceEecccC
Q 043667 335 TNSSLETLKIERC 347 (387)
Q Consensus 335 ~~~~L~~L~l~~c 347 (387)
.+ |+.++++++
T Consensus 320 ~~--L~~l~l~~n 330 (332)
T 2ft3_A 320 TD--RLAIQFGNY 330 (332)
T ss_dssp CC--STTEEC---
T ss_pred ch--hhhhhcccc
Confidence 44 555555543
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=1.6e-18 Score=157.82 Aligned_cols=228 Identities=21% Similarity=0.224 Sum_probs=135.8
Q ss_pred CCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCCCCceEeCccccCCCcccCC
Q 043667 5 HKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPF 83 (387)
Q Consensus 5 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 83 (387)
..++++|+++++....+|..++. +++|++|++++| .+..+|. ++.+++|++|+++++ .+..++.. +..+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~--l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~------l~~l 149 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFR--LSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARN-PLRALPAS------IASL 149 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGG--GTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESC-CCCCCCGG------GGGC
T ss_pred ccceeEEEccCCCchhcChhhhh--CCCCCEEECCCC-CccchhHHHhccCCCCEEECCCC-ccccCcHH------HhcC
Confidence 36778888888887778877776 788888888775 5556765 777888888888877 45555443 2345
Q ss_pred CCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCCCccEEEeccCc--cccccccCCCCcceE
Q 043667 84 PRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACK--ELSVSVSSLPALCKL 161 (387)
Q Consensus 84 ~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~L~~L 161 (387)
++|++|+++++........ . +....+.+ . ...+++|+.|+++++. .++..+..+++|++|
T Consensus 150 ~~L~~L~L~~n~~~~~~p~-----~------~~~~~~~~------~-~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L 211 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPE-----P------LASTDASG------E-HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211 (328)
T ss_dssp TTCCEEEEEEETTCCCCCS-----C------SEEEC-CC------C-EEESTTCCEEEEEEECCCCCCGGGGGCTTCCEE
T ss_pred cCCCEEECCCCCCccccCh-----h------Hhhccchh------h-hccCCCCCEEECcCCCcCcchHhhcCCCCCCEE
Confidence 5566666555443322211 0 00000000 0 0013344444443332 122334445555555
Q ss_pred EEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCC
Q 043667 162 KIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWC 241 (387)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 241 (387)
+++++....++..+..+++|++ +.++++.....+|.. ++.+++|++|++++|
T Consensus 212 ~L~~N~l~~l~~~l~~l~~L~~---------------------------L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n 263 (328)
T 4fcg_A 212 KIRNSPLSALGPAIHHLPKLEE---------------------------LDLRGCTALRNYPPI-FGGRAPLKRLILKDC 263 (328)
T ss_dssp EEESSCCCCCCGGGGGCTTCCE---------------------------EECTTCTTCCBCCCC-TTCCCCCCEEECTTC
T ss_pred EccCCCCCcCchhhccCCCCCE---------------------------EECcCCcchhhhHHH-hcCCCCCCEEECCCC
Confidence 5555443333333334444444 555554444444544 567788888888888
Q ss_pred CCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecC
Q 043667 242 PKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYD 297 (387)
Q Consensus 242 ~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~ 297 (387)
...+.++. .+..+ ++|++|++++|+..+.+|..+..+++|+.+++..
T Consensus 264 ~~~~~~p~-----~~~~l----~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 264 SNLLTLPL-----DIHRL----TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TTCCBCCT-----TGGGC----TTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred Cchhhcch-----hhhcC----CCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 77777665 35555 8888888888888888888888888888888864
No 44
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=3.7e-17 Score=160.39 Aligned_cols=255 Identities=22% Similarity=0.197 Sum_probs=149.2
Q ss_pred CCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCC
Q 043667 6 KNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPR 85 (387)
Q Consensus 6 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 85 (387)
.++++|+++++....+|..+. ++|++|++++| .++.+|. .+++|++|+++++ .++.++. .+++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~----~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N-~l~~lp~---------~l~~ 102 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP----AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGN-QLTSLPV---------LPPG 102 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC----TTCSEEEECSC-CCSCCCC--CCTTCCEEEECSC-CCSCCCC---------CCTT
T ss_pred CCCcEEEecCCCcCccChhhC----CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCCC-cCCcCCC---------CCCC
Confidence 368899999999888887653 68999999986 6788887 6889999999988 5665553 3688
Q ss_pred cceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCCCccEEEeccCccccccccCCCCcceEEEcC
Q 043667 86 LETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGG 165 (387)
Q Consensus 86 L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~i~~ 165 (387)
|++|+++++. +.... . .+++|+.|+++++ .++ .+|..+++|+.|+++++..-. .-...++|+.|++.+
T Consensus 103 L~~L~Ls~N~-l~~l~------~--~l~~L~~L~L~~N-~l~-~lp~~l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~ 170 (622)
T 3g06_A 103 LLELSIFSNP-LTHLP------A--LPSGLCKLWIFGN-QLT-SLPVLPPGLQELSVSDNQLAS-LPALPSELCKLWAYN 170 (622)
T ss_dssp CCEEEECSCC-CCCCC------C--CCTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCS
T ss_pred CCEEECcCCc-CCCCC------C--CCCCcCEEECCCC-CCC-cCCCCCCCCCEEECcCCcCCC-cCCccCCCCEEECCC
Confidence 8888887642 32221 1 3677888888776 444 466666777777777664221 111234566666655
Q ss_pred ccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcc
Q 043667 166 CKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQ 245 (387)
Q Consensus 166 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 245 (387)
+....++ ..+++|+.|+++++. +..+|. .+++|+.|+++++ .+.
T Consensus 171 N~l~~l~---~~~~~L~~L~Ls~N~----------------------------l~~l~~----~~~~L~~L~L~~N-~l~ 214 (622)
T 3g06_A 171 NQLTSLP---MLPSGLQELSVSDNQ----------------------------LASLPT----LPSELYKLWAYNN-RLT 214 (622)
T ss_dssp SCCSCCC---CCCTTCCEEECCSSC----------------------------CSCCCC----CCTTCCEEECCSS-CCS
T ss_pred CCCCCCc---ccCCCCcEEECCCCC----------------------------CCCCCC----ccchhhEEECcCC-ccc
Confidence 4333222 234555555555432 222222 1345555555553 333
Q ss_pred cchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCC
Q 043667 246 SLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALK 325 (387)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~ 325 (387)
.++.. +++|++|++++| .++.+| ..+++|+.|++++ +.++.++. .+++|+.|++++| .++
T Consensus 215 ~l~~~------------~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~-N~L~~lp~--~~~~L~~L~Ls~N-~L~ 274 (622)
T 3g06_A 215 SLPAL------------PSGLKELIVSGN-RLTSLP---VLPSELKELMVSG-NRLTSLPM--LPSGLLSLSVYRN-QLT 274 (622)
T ss_dssp SCCCC------------CTTCCEEECCSS-CCSCCC---CCCTTCCEEECCS-SCCSCCCC--CCTTCCEEECCSS-CCC
T ss_pred ccCCC------------CCCCCEEEccCC-ccCcCC---CCCCcCcEEECCC-CCCCcCCc--ccccCcEEeCCCC-CCC
Confidence 33321 155566666553 344444 2345566666655 35555554 3355666666553 355
Q ss_pred ccccccccCCCCCcceEecccC
Q 043667 326 SLPEAWMCDTNSSLETLKIERC 347 (387)
Q Consensus 326 ~l~~~~~~~~~~~L~~L~l~~c 347 (387)
.+|..+..+++ |+.|+++++
T Consensus 275 ~lp~~l~~l~~--L~~L~L~~N 294 (622)
T 3g06_A 275 RLPESLIHLSS--ETTVNLEGN 294 (622)
T ss_dssp SCCGGGGGSCT--TCEEECCSC
T ss_pred cCCHHHhhccc--cCEEEecCC
Confidence 55555555555 666666654
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.78 E-value=4.2e-18 Score=155.10 Aligned_cols=224 Identities=23% Similarity=0.367 Sum_probs=123.4
Q ss_pred CCCcceEeeccCcccccccCCC---CCCccEEEeccCc--cccccccCCCCcceEEEcCccceeEecccccCCCCcEEec
Q 043667 112 FPKLRELHILRCSKLQGTFPEH---LPALEMLVIEACK--ELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVC 186 (387)
Q Consensus 112 ~~~L~~L~l~~~~~l~~~~~~~---~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l 186 (387)
.++++.|+++++ .+. .+|.. +++|+.|+++++. .++..++.+++|++|+++++....++..+..+++|++|++
T Consensus 80 ~~~l~~L~L~~n-~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSV-PLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESS-CCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCC-Cch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 356666666654 333 34432 4555555555543 2223344555555555555443334444445555555555
Q ss_pred cCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCc
Q 043667 187 RDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRL 266 (387)
Q Consensus 187 ~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L 266 (387)
++|.....++... .. .. ++ +.++.+++|++|+++++ .+..++. .+..+ ++|
T Consensus 158 ~~n~~~~~~p~~~----~~-----~~---------~~-~~~~~l~~L~~L~L~~n-~l~~lp~-----~l~~l----~~L 208 (328)
T 4fcg_A 158 RACPELTELPEPL----AS-----TD---------AS-GEHQGLVNLQSLRLEWT-GIRSLPA-----SIANL----QNL 208 (328)
T ss_dssp EEETTCCCCCSCS----EE-----EC----------C-CCEEESTTCCEEEEEEE-CCCCCCG-----GGGGC----TTC
T ss_pred CCCCCccccChhH----hh-----cc---------ch-hhhccCCCCCEEECcCC-CcCcchH-----hhcCC----CCC
Confidence 5544333332220 00 00 00 01234667777777764 4444443 24444 677
Q ss_pred cEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCC-cCCCceEEEeccCCCCCccccccccCCCCCcceEecc
Q 043667 267 EYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVA-LPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIE 345 (387)
Q Consensus 267 ~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~ 345 (387)
++|++++| .++.++..+..+++|+.|++++|.....++... -.++|++|++++|+..+.+|..+..+++ |++|+++
T Consensus 209 ~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~--L~~L~L~ 285 (328)
T 4fcg_A 209 KSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ--LEKLDLR 285 (328)
T ss_dssp CEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTT--CCEEECT
T ss_pred CEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCC--CCEEeCC
Confidence 77777764 355666666677777777777766555555321 1267777777777766777766666666 7777777
Q ss_pred cCcccccccCC-CCCCCccEEeecC
Q 043667 346 RCRSLTYIAGV-QLPPSLKRLDIWN 369 (387)
Q Consensus 346 ~c~~l~~~~~~-~~~~~L~~L~l~~ 369 (387)
+|+.++.+|.. ..+++|+.+++..
T Consensus 286 ~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 286 GCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCCchhhccHHHhhccCceEEeCCH
Confidence 77666666665 5556667766664
No 46
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=2.8e-21 Score=190.47 Aligned_cols=353 Identities=14% Similarity=0.074 Sum_probs=169.0
Q ss_pred CCCCCcEEEEcCcCCC----CCC-Cc-------cC--CccCCCccEEEeecCCCCCCCC--CcC-CcCCCcEEEecCCCC
Q 043667 4 PHKNLEQFCISGYRGA----KFP-TW-------FG--DSSFSNLVTLKFEYCGMCPTLP--SVG-QLPSLKHLAVCGMTS 66 (387)
Q Consensus 4 ~~~~L~~L~l~~~~~~----~~p-~~-------~~--~~~l~~L~~L~l~~c~~~~~l~--~~~-~l~~L~~L~l~~~~~ 66 (387)
.+++|++|+++++... -.| .| +. ...+++|++|++++|. +.... .+. .+++|++|++.+|..
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 4678888888876522 112 22 11 0137788888888863 33211 233 578888888888754
Q ss_pred ceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCc-cccc----ccCCCCCCccEEE
Q 043667 67 VKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCS-KLQG----TFPEHLPALEMLV 141 (387)
Q Consensus 67 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~-~l~~----~~~~~~~~L~~L~ 141 (387)
+........ ...+++|++|++.++. +.+............+++|+.|+++++. .+.. .+...+++|+.|+
T Consensus 143 ~~~~~l~~~----~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~ 217 (594)
T 2p1m_B 143 FSTDGLAAI----AATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLK 217 (594)
T ss_dssp EEHHHHHHH----HHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHH----HHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEe
Confidence 433111100 1246788888887765 2222110000111146677777777664 1110 1112357777777
Q ss_pred eccCcccc---ccccCCCCcceEEEcCcc-------------------------------ceeEecccccCCCCcEEecc
Q 043667 142 IEACKELS---VSVSSLPALCKLKIGGCK-------------------------------KVVWRSATDHLGSQNSVVCR 187 (387)
Q Consensus 142 l~~~~~l~---~~~~~~~~L~~L~i~~~~-------------------------------~~~~~~~~~~~~~L~~L~l~ 187 (387)
+++|..+. ..+..+++|++|.+..+. ...++.....+++|++|+++
T Consensus 218 L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~ 297 (594)
T 2p1m_B 218 LNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS 297 (594)
T ss_dssp CCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECT
T ss_pred cCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEcc
Confidence 77663221 223344455555433221 00011112235666777766
Q ss_pred CCCCccccc-CCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecC--------CCCcccchhhHHHH----
Q 043667 188 DTSNQVFLA-GPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDW--------CPKLQSLVAEEEKD---- 254 (387)
Q Consensus 188 ~~~~l~~~~-~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~--------~~~l~~~~~~~~~~---- 254 (387)
+|. +.... ......+++|++ +.+.++.....++ .+...+++|++|++.+ +..+.......+..
T Consensus 298 ~~~-l~~~~l~~~~~~~~~L~~--L~l~~~~~~~~l~-~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~ 373 (594)
T 2p1m_B 298 YAT-VQSYDLVKLLCQCPKLQR--LWVLDYIEDAGLE-VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK 373 (594)
T ss_dssp TCC-CCHHHHHHHHTTCTTCCE--EEEEGGGHHHHHH-HHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTT
T ss_pred CCC-CCHHHHHHHHhcCCCcCE--EeCcCccCHHHHH-HHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchh
Confidence 665 22110 000234455555 5555541101111 1122345555555522 12221110000000
Q ss_pred --------------HHhhhhhccCCccEEEec-----cCCCCCCccc------ccCCCCCccEEEecCCCCceecCCCC-
Q 043667 255 --------------QQQQLCELSCRLEYLRLR-----YCKGLVKLPQ------SSLSLSSLREIDIYDCSSLVSFPEVA- 308 (387)
Q Consensus 255 --------------~~~~l~~~~~~L~~L~l~-----~c~~l~~~~~------~~~~~~~L~~L~l~~c~~l~~~~~~~- 308 (387)
.+..+...+++|++|++. +|..++..+. .+..+++|+.|++++ .++......
T Consensus 374 L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l 451 (594)
T 2p1m_B 374 LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYI 451 (594)
T ss_dssp CCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHH
T ss_pred HHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHH
Confidence 111111123677777776 4555554332 134566777777754 333221111
Q ss_pred --cCCCceEEEeccCCCCCcc-cccc-ccCCCCCcceEecccCcccccccCC---CCCCCccEEeecCCcc
Q 043667 309 --LPSKLKKIEIRKCDALKSL-PEAW-MCDTNSSLETLKIERCRSLTYIAGV---QLPPSLKRLDIWNCDN 372 (387)
Q Consensus 309 --~~~~L~~L~l~~c~~l~~l-~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~C~~ 372 (387)
..++|++|++++|. +.+. ...+ ..+++ |++|++++|+. ++.... ..+++|++|++++|+.
T Consensus 452 ~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~--L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 452 GTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDS--LRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHCTTCCEEEEESCC-SSHHHHHHHHHHCTT--CCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHhchhccEeeccCCC-CcHHHHHHHHhcCCC--cCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 13678888887765 4321 1111 33566 99999998854 432221 3457899999999875
No 47
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=1.8e-20 Score=184.68 Aligned_cols=108 Identities=19% Similarity=0.162 Sum_probs=64.2
Q ss_pred cCCccEEEecc---CCCCCCccc------ccCCCCCccEEEecCCCC-ceecCCC---CcCCCceEEEeccCCCCCc--c
Q 043667 263 SCRLEYLRLRY---CKGLVKLPQ------SSLSLSSLREIDIYDCSS-LVSFPEV---ALPSKLKKIEIRKCDALKS--L 327 (387)
Q Consensus 263 ~~~L~~L~l~~---c~~l~~~~~------~~~~~~~L~~L~l~~c~~-l~~~~~~---~~~~~L~~L~l~~c~~l~~--l 327 (387)
+++|++|++.. |+.++..|. .+..+++|+.|++++|.+ ++..... ...++|++|++++|. +.+ +
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~ 480 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGL 480 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHH
Confidence 36777777763 445554321 244577778888766543 2211100 113678888888765 543 3
Q ss_pred ccccccCCCCCcceEecccCcccccc--cCC-CCCCCccEEeecCCccccc
Q 043667 328 PEAWMCDTNSSLETLKIERCRSLTYI--AGV-QLPPSLKRLDIWNCDNIRT 375 (387)
Q Consensus 328 ~~~~~~~~~~~L~~L~l~~c~~l~~~--~~~-~~~~~L~~L~l~~C~~l~~ 375 (387)
+..+..+++ |++|++++|+ +++. +.. ..+++|++|++++|+ ++.
T Consensus 481 ~~~~~~~~~--L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 481 MEFSRGCPN--LQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp HHHHTCCTT--CCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred HHHHhcCcc--cCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 333344566 9999999986 5532 211 346789999999987 554
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.75 E-value=9.6e-17 Score=146.34 Aligned_cols=278 Identities=11% Similarity=0.098 Sum_probs=197.9
Q ss_pred CCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCC
Q 043667 6 KNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPF 83 (387)
Q Consensus 6 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 83 (387)
.+++.++++++....+|..+ .+++++|+++++ .++.++. ++.+++|++|+++++ .+..+.... +..+
T Consensus 31 c~l~~l~~~~~~l~~lp~~~----~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~~l 99 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL----PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINN-KISKISPGA-----FAPL 99 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC----CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTT-----TTTC
T ss_pred CCCeEEEecCCCccccCccC----CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCC-cCCeeCHHH-----hcCC
Confidence 47999999999988888765 368999999996 6777774 899999999999998 666664332 3568
Q ss_pred CCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccC---CCCCCccEEEeccCccc-----cccccCC
Q 043667 84 PRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFP---EHLPALEMLVIEACKEL-----SVSVSSL 155 (387)
Q Consensus 84 ~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~---~~~~~L~~L~l~~~~~l-----~~~~~~~ 155 (387)
++|++|+++++. +.... .. .+++|++|+++++ .+.+..+ ..+++|+.|+++++..- ...+..+
T Consensus 100 ~~L~~L~Ls~n~-l~~l~-----~~--~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 170 (330)
T 1xku_A 100 VKLERLYLSKNQ-LKELP-----EK--MPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170 (330)
T ss_dssp TTCCEEECCSSC-CSBCC-----SS--CCTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC
T ss_pred CCCCEEECCCCc-CCccC-----hh--hcccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCcChhhccCC
Confidence 999999999753 33332 12 2479999999987 3332222 35889999999987632 2457788
Q ss_pred CCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccE
Q 043667 156 PALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKK 235 (387)
Q Consensus 156 ~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~ 235 (387)
++|++|+++++....++... .++|++|+++++. +..........+++|++ +.++++. +..++...++.+++|++
T Consensus 171 ~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~--L~Ls~n~-l~~~~~~~~~~l~~L~~ 244 (330)
T 1xku_A 171 KKLSYIRIADTNITTIPQGL--PPSLTELHLDGNK-ITKVDAASLKGLNNLAK--LGLSFNS-ISAVDNGSLANTPHLRE 244 (330)
T ss_dssp TTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSC-CCEECTGGGTTCTTCCE--EECCSSC-CCEECTTTGGGSTTCCE
T ss_pred CCcCEEECCCCccccCCccc--cccCCEEECCCCc-CCccCHHHhcCCCCCCE--EECCCCc-CceeChhhccCCCCCCE
Confidence 99999999988655544433 3899999999875 33333333567788888 9998765 45555545778999999
Q ss_pred EEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccc-cC------CCCCccEEEecCCCCcee--cCC
Q 043667 236 LTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS-SL------SLSSLREIDIYDCSSLVS--FPE 306 (387)
Q Consensus 236 L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~-~~------~~~~L~~L~l~~c~~l~~--~~~ 306 (387)
|+++++ .+..++. ++..+ ++|++|+++++. ++.++.. +. ..+.++.++++++ .++. ++.
T Consensus 245 L~L~~N-~l~~lp~-----~l~~l----~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N-~~~~~~i~~ 312 (330)
T 1xku_A 245 LHLNNN-KLVKVPG-----GLADH----KYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSN-PVQYWEIQP 312 (330)
T ss_dssp EECCSS-CCSSCCT-----TTTTC----SSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSS-SSCGGGSCG
T ss_pred EECCCC-cCccCCh-----hhccC----CCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecC-cccccccCc
Confidence 999996 5566654 35555 999999999864 7766543 21 3478899999984 4443 333
Q ss_pred CCcC--CCceEEEeccC
Q 043667 307 VALP--SKLKKIEIRKC 321 (387)
Q Consensus 307 ~~~~--~~L~~L~l~~c 321 (387)
..+. ++++.++++++
T Consensus 313 ~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 313 STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGGTTCCCGGGEEC---
T ss_pred cccccccceeEEEeccc
Confidence 3333 78888988764
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.73 E-value=6.6e-17 Score=147.56 Aligned_cols=277 Identities=15% Similarity=0.117 Sum_probs=196.9
Q ss_pred CCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCC
Q 043667 6 KNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPF 83 (387)
Q Consensus 6 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 83 (387)
.+++.++++++....+|..+ .++|++|+++++ .++.++. ++.+++|++|++.++ .+..+.... +..+
T Consensus 33 c~l~~l~~~~~~l~~ip~~~----~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~~l 101 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI----SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNN-KISKIHEKA-----FSPL 101 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC----CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECGGG-----STTC
T ss_pred ccCCEEECCCCCccccCCCC----CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCC-ccCccCHhH-----hhCc
Confidence 37999999999999998765 468999999996 6777754 899999999999999 677775443 3568
Q ss_pred CCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccC----CCCCCccEEEeccCccc-----cccccC
Q 043667 84 PRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFP----EHLPALEMLVIEACKEL-----SVSVSS 154 (387)
Q Consensus 84 ~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~----~~~~~L~~L~l~~~~~l-----~~~~~~ 154 (387)
++|++|+++++. +.... ..+ +++|++|+++++ .+. .++ ..+++|+.|+++++..- ...+..
T Consensus 102 ~~L~~L~L~~n~-l~~l~-----~~~--~~~L~~L~l~~n-~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 171 (332)
T 2ft3_A 102 RKLQKLYISKNH-LVEIP-----PNL--PSSLVELRIHDN-RIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171 (332)
T ss_dssp TTCCEEECCSSC-CCSCC-----SSC--CTTCCEEECCSS-CCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS
T ss_pred CCCCEEECCCCc-CCccC-----ccc--cccCCEEECCCC-ccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccC
Confidence 999999999753 33332 122 489999999987 343 233 34789999999987642 234455
Q ss_pred CCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCcc
Q 043667 155 LPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLK 234 (387)
Q Consensus 155 ~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~ 234 (387)
+ +|+.|+++++....++... .++|++|+++++. +...+......+++|++ +.++++. +..++...++.+++|+
T Consensus 172 l-~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~--L~L~~N~-l~~~~~~~~~~l~~L~ 244 (332)
T 2ft3_A 172 L-KLNYLRISEAKLTGIPKDL--PETLNELHLDHNK-IQAIELEDLLRYSKLYR--LGLGHNQ-IRMIENGSLSFLPTLR 244 (332)
T ss_dssp C-CCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSSC-CCCCCTTSSTTCTTCSC--CBCCSSC-CCCCCTTGGGGCTTCC
T ss_pred C-ccCEEECcCCCCCccCccc--cCCCCEEECCCCc-CCccCHHHhcCCCCCCE--EECCCCc-CCcCChhHhhCCCCCC
Confidence 5 8999999987655544332 3799999999864 34444333567788888 8888764 5555555578899999
Q ss_pred EEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccc-cC------CCCCccEEEecCCCCce--ecC
Q 043667 235 KLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS-SL------SLSSLREIDIYDCSSLV--SFP 305 (387)
Q Consensus 235 ~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~-~~------~~~~L~~L~l~~c~~l~--~~~ 305 (387)
+|+++++ .+..++. ++..+ ++|++|+++++ .++.++.. +. ..++|+.|++.+++ +. .+.
T Consensus 245 ~L~L~~N-~l~~lp~-----~l~~l----~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~ 312 (332)
T 2ft3_A 245 ELHLDNN-KLSRVPA-----GLPDL----KLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQ 312 (332)
T ss_dssp EEECCSS-CCCBCCT-----TGGGC----TTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSC
T ss_pred EEECCCC-cCeecCh-----hhhcC----ccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc-ccccccC
Confidence 9999985 5666665 35555 99999999985 47766542 22 25789999999854 44 333
Q ss_pred CCCcC--CCceEEEeccCC
Q 043667 306 EVALP--SKLKKIEIRKCD 322 (387)
Q Consensus 306 ~~~~~--~~L~~L~l~~c~ 322 (387)
...+. ++|+.++++++.
T Consensus 313 ~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 313 PATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGGTTBCCSTTEEC----
T ss_pred cccccccchhhhhhccccc
Confidence 33343 789999988764
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=2.3e-17 Score=149.29 Aligned_cols=241 Identities=17% Similarity=0.159 Sum_probs=115.6
Q ss_pred CCccEEEeecCCCCC---CCCC-cCCcCCCcEEEecCCCCce-EeCccccCCCcccCCCCcceeeccccCCccccccCcC
Q 043667 31 SNLVTLKFEYCGMCP---TLPS-VGQLPSLKHLAVCGMTSVK-RLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRS 105 (387)
Q Consensus 31 ~~L~~L~l~~c~~~~---~l~~-~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 105 (387)
.+++.|+++++ .+. .+|. ++++++|++|+++++..+. .++.. +..+++|++|+++++. +....+
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~------l~~l~~L~~L~Ls~n~-l~~~~p--- 118 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA------IAKLTQLHYLYITHTN-VSGAIP--- 118 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG------GGGCTTCSEEEEEEEC-CEEECC---
T ss_pred ceEEEEECCCC-CccCCcccChhHhCCCCCCeeeCCCCCcccccCChh------HhcCCCCCEEECcCCe-eCCcCC---
Confidence 34555555554 222 2332 5555555555555321232 22222 2345555555555432 211111
Q ss_pred CCCccCCCCcceEeeccCcccccccCC---CCCCccEEEeccCcc---ccccccCCC-CcceEEEcCcccee-Eeccccc
Q 043667 106 GQGVEGFPKLRELHILRCSKLQGTFPE---HLPALEMLVIEACKE---LSVSVSSLP-ALCKLKIGGCKKVV-WRSATDH 177 (387)
Q Consensus 106 ~~~i~~~~~L~~L~l~~~~~l~~~~~~---~~~~L~~L~l~~~~~---l~~~~~~~~-~L~~L~i~~~~~~~-~~~~~~~ 177 (387)
..+..+++|++|+++++ .+.+.+|. .+++|+.|+++++.. ++..+..++ +|+.|+++++.... .+..+..
T Consensus 119 -~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~ 196 (313)
T 1ogq_A 119 -DFLSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196 (313)
T ss_dssp -GGGGGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred -HHHhCCCCCCEEeCCCC-ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence 22334566666666655 23323332 244555555554431 223444554 66666666554332 2333333
Q ss_pred CCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHh
Q 043667 178 LGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQ 257 (387)
Q Consensus 178 ~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 257 (387)
++ |++|+++++. ++..+...++.+++|+.|+++++.-...++. +.
T Consensus 197 l~-L~~L~Ls~N~----------------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------~~ 241 (313)
T 1ogq_A 197 LN-LAFVDLSRNM----------------------------LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK------VG 241 (313)
T ss_dssp CC-CSEEECCSSE----------------------------EEECCGGGCCTTSCCSEEECCSSEECCBGGG------CC
T ss_pred Cc-ccEEECcCCc----------------------------ccCcCCHHHhcCCCCCEEECCCCceeeecCc------cc
Confidence 33 5555555431 1111222245566777777776432222221 22
Q ss_pred hhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCce-ecCCCCcCCCceEEEeccCCCC
Q 043667 258 QLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLV-SFPEVALPSKLKKIEIRKCDAL 324 (387)
Q Consensus 258 ~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~L~~L~l~~c~~l 324 (387)
.+ ++|++|+++++.-...+|..+..+++|+.|+++++ .++ .+|.....++|+.+++.+++.+
T Consensus 242 ~l----~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 242 LS----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN-NLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CC----TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS-EEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred cc----CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC-cccccCCCCccccccChHHhcCCCCc
Confidence 22 67777777765422256666667777777777764 343 5554433366666666665543
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=6.3e-16 Score=151.65 Aligned_cols=256 Identities=21% Similarity=0.167 Sum_probs=170.5
Q ss_pred CCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCc
Q 043667 31 SNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGV 109 (387)
Q Consensus 31 ~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i 109 (387)
.+++.|+++++ .++.+|. +. ++|++|++.++ .++.++. .+++|++|+++++. ++... .
T Consensus 40 ~~l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~---------~l~~L~~L~Ls~N~-l~~lp------~- 98 (622)
T 3g06_A 40 NGNAVLNVGES-GLTTLPDCLP--AHITTLVIPDN-NLTSLPA---------LPPELRTLEVSGNQ-LTSLP------V- 98 (622)
T ss_dssp HCCCEEECCSS-CCSCCCSCCC--TTCSEEEECSC-CCSCCCC---------CCTTCCEEEECSCC-CSCCC------C-
T ss_pred CCCcEEEecCC-CcCccChhhC--CCCcEEEecCC-CCCCCCC---------cCCCCCEEEcCCCc-CCcCC------C-
Confidence 36889999885 6778876 33 78999999888 5665543 25677777777643 22221 1
Q ss_pred cCCCCcceEeeccCcccccccCCCCCCccEEEeccCccccccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCC
Q 043667 110 EGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDT 189 (387)
Q Consensus 110 ~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~ 189 (387)
.+++|+.|+++++ .+. .+|..+++|+.|+++++ ....++. .+++|++|+++++
T Consensus 99 -~l~~L~~L~Ls~N-~l~-~l~~~l~~L~~L~L~~N---------------------~l~~lp~---~l~~L~~L~Ls~N 151 (622)
T 3g06_A 99 -LPPGLLELSIFSN-PLT-HLPALPSGLCKLWIFGN---------------------QLTSLPV---LPPGLQELSVSDN 151 (622)
T ss_dssp -CCTTCCEEEECSC-CCC-CCCCCCTTCCEEECCSS---------------------CCSCCCC---CCTTCCEEECCSS
T ss_pred -CCCCCCEEECcCC-cCC-CCCCCCCCcCEEECCCC---------------------CCCcCCC---CCCCCCEEECcCC
Confidence 3566666666655 333 34444455555555444 2222221 1356666666654
Q ss_pred CCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEE
Q 043667 190 SNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYL 269 (387)
Q Consensus 190 ~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L 269 (387)
.+..++ ..+++|+. +.+.++ .++.+| ..+++|+.|+++++ .+..++.. +++|+.|
T Consensus 152 -~l~~l~----~~~~~L~~--L~L~~N-~l~~l~----~~~~~L~~L~Ls~N-~l~~l~~~------------~~~L~~L 206 (622)
T 3g06_A 152 -QLASLP----ALPSELCK--LWAYNN-QLTSLP----MLPSGLQELSVSDN-QLASLPTL------------PSELYKL 206 (622)
T ss_dssp -CCSCCC----CCCTTCCE--EECCSS-CCSCCC----CCCTTCCEEECCSS-CCSCCCCC------------CTTCCEE
T ss_pred -cCCCcC----CccCCCCE--EECCCC-CCCCCc----ccCCCCcEEECCCC-CCCCCCCc------------cchhhEE
Confidence 222222 22345555 666654 344555 24689999999985 55655432 2899999
Q ss_pred EeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcceEecccCcc
Q 043667 270 RLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRS 349 (387)
Q Consensus 270 ~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~ 349 (387)
++++| .++.++. .+++|+.|++++ +.++.++ ...++|+.|++++| .++.+|.. +.+ |++|++++| +
T Consensus 207 ~L~~N-~l~~l~~---~~~~L~~L~Ls~-N~L~~lp--~~l~~L~~L~Ls~N-~L~~lp~~---~~~--L~~L~Ls~N-~ 272 (622)
T 3g06_A 207 WAYNN-RLTSLPA---LPSGLKELIVSG-NRLTSLP--VLPSELKELMVSGN-RLTSLPML---PSG--LLSLSVYRN-Q 272 (622)
T ss_dssp ECCSS-CCSSCCC---CCTTCCEEECCS-SCCSCCC--CCCTTCCEEECCSS-CCSCCCCC---CTT--CCEEECCSS-C
T ss_pred ECcCC-cccccCC---CCCCCCEEEccC-CccCcCC--CCCCcCcEEECCCC-CCCcCCcc---ccc--CcEEeCCCC-C
Confidence 99985 5777775 358899999998 5888887 44589999999986 58888873 566 999999996 7
Q ss_pred cccccCC-CCCCCccEEeecCCccc
Q 043667 350 LTYIAGV-QLPPSLKRLDIWNCDNI 373 (387)
Q Consensus 350 l~~~~~~-~~~~~L~~L~l~~C~~l 373 (387)
++.+|.. ..+++|+.|++++++--
T Consensus 273 L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 273 LTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred CCcCCHHHhhccccCEEEecCCCCC
Confidence 8888866 66799999999997643
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=2.1e-17 Score=149.46 Aligned_cols=228 Identities=15% Similarity=0.091 Sum_probs=147.9
Q ss_pred CCCccEEEeccCc----cccccccCCCCcceEEEcCccce-eEecccccCCCCcEEeccCCCCcccccCCCCCCCccccc
Q 043667 134 LPALEMLVIEACK----ELSVSVSSLPALCKLKIGGCKKV-VWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEE 208 (387)
Q Consensus 134 ~~~L~~L~l~~~~----~l~~~~~~~~~L~~L~i~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 208 (387)
+++|+.|+++++. .++..+..+++|++|+++++... ..+..+..+++|++|+++++.-...++.. ...+++|++
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~ 153 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVG 153 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH-HhcCCCCCe
Confidence 3445555554311 12234556666666666665544 24445566667777777665322222222 345566666
Q ss_pred eeEEEcCCCCcccccccccccCC-CccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCC
Q 043667 209 LILSTKEQTYIWKSHDGLLQDIC-SLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSL 287 (387)
Q Consensus 209 l~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 287 (387)
+.+.++.....+|.. ++.++ +|++|+++++.-...++. .+..+ . |++|+++++.--...+..+..+
T Consensus 154 --L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~~-----~~~~l----~-L~~L~Ls~N~l~~~~~~~~~~l 220 (313)
T 1ogq_A 154 --ITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPP-----TFANL----N-LAFVDLSRNMLEGDASVLFGSD 220 (313)
T ss_dssp --EECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECCG-----GGGGC----C-CSEEECCSSEEEECCGGGCCTT
T ss_pred --EECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCCh-----HHhCC----c-ccEEECcCCcccCcCCHHHhcC
Confidence 777666544355655 55666 899999998644334443 34444 4 9999999865333566678899
Q ss_pred CCccEEEecCCCCce-ecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcceEecccCcccc-cccCCCCCCCccEE
Q 043667 288 SSLREIDIYDCSSLV-SFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLT-YIAGVQLPPSLKRL 365 (387)
Q Consensus 288 ~~L~~L~l~~c~~l~-~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~L~~L 365 (387)
++|+.|+++++ .++ .++.....++|++|+++++.--..+|..+..+++ |++|+++++ +++ .+|....+++|+.+
T Consensus 221 ~~L~~L~L~~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~Ls~N-~l~~~ip~~~~l~~L~~l 296 (313)
T 1ogq_A 221 KNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF--LHSLNVSFN-NLCGEIPQGGNLQRFDVS 296 (313)
T ss_dssp SCCSEEECCSS-EECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTT--CCEEECCSS-EEEEECCCSTTGGGSCGG
T ss_pred CCCCEEECCCC-ceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcC--CCEEECcCC-cccccCCCCccccccChH
Confidence 99999999985 444 3343334489999999987643478888777888 999999996 555 66665667899999
Q ss_pred eecCCccccccccc
Q 043667 366 DIWNCDNIRTLTVE 379 (387)
Q Consensus 366 ~l~~C~~l~~l~~~ 379 (387)
++++.+.+...|..
T Consensus 297 ~l~~N~~lc~~p~~ 310 (313)
T 1ogq_A 297 AYANNKCLCGSPLP 310 (313)
T ss_dssp GTCSSSEEESTTSS
T ss_pred HhcCCCCccCCCCC
Confidence 99998877766543
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=9.1e-16 Score=145.50 Aligned_cols=233 Identities=18% Similarity=0.194 Sum_probs=102.1
Q ss_pred cEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCccCCC
Q 043667 34 VTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFP 113 (387)
Q Consensus 34 ~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~ 113 (387)
+.++..+ ..++.+|. +-.++++.|++.++ .++.++... +..+++|++|++.++. +..... ..+..++
T Consensus 46 ~~v~c~~-~~l~~iP~-~~~~~l~~L~L~~n-~i~~~~~~~-----~~~l~~L~~L~Ls~n~-i~~i~~----~~~~~l~ 112 (440)
T 3zyj_A 46 SKVICVR-KNLREVPD-GISTNTRLLNLHEN-QIQIIKVNS-----FKHLRHLEILQLSRNH-IRTIEI----GAFNGLA 112 (440)
T ss_dssp CEEECCS-CCCSSCCS-CCCTTCSEEECCSC-CCCEECTTT-----TSSCSSCCEEECCSSC-CCEECG----GGGTTCS
T ss_pred CEEEeCC-CCcCcCCC-CCCCCCcEEEccCC-cCCeeCHHH-----hhCCCCCCEEECCCCc-CCccCh----hhccCCc
Confidence 3444433 24444543 11245555555555 444444322 2335555555555432 222221 2233455
Q ss_pred CcceEeeccCcccccccCC----CCCCccEEEeccCccc--c-ccccCCCCcceEEEcCcccee-Ee-cccccCCCCcEE
Q 043667 114 KLRELHILRCSKLQGTFPE----HLPALEMLVIEACKEL--S-VSVSSLPALCKLKIGGCKKVV-WR-SATDHLGSQNSV 184 (387)
Q Consensus 114 ~L~~L~l~~~~~l~~~~~~----~~~~L~~L~l~~~~~l--~-~~~~~~~~L~~L~i~~~~~~~-~~-~~~~~~~~L~~L 184 (387)
+|++|+++++ .++ .++. .+++|+.|+++++..- . ..+..+++|++|++.++..+. +. ..+..+++|++|
T Consensus 113 ~L~~L~L~~n-~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 113 NLNTLELFDN-RLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp SCCEEECCSS-CCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred cCCEEECCCC-cCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence 6666666554 232 1221 2344444444443311 1 235556666666666654444 21 234455666666
Q ss_pred eccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccC
Q 043667 185 VCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSC 264 (387)
Q Consensus 185 ~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~ 264 (387)
+++++. +..++. ...+++|++ |.++++ .+..++...+..+++|++|+++++ .+..+.+. .+..+ +
T Consensus 191 ~L~~n~-l~~~~~--~~~l~~L~~--L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~----~~~~l----~ 255 (440)
T 3zyj_A 191 NLAMCN-LREIPN--LTPLIKLDE--LDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERN----AFDNL----Q 255 (440)
T ss_dssp ECTTSC-CSSCCC--CTTCSSCCE--EECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTT----SSTTC----T
T ss_pred cCCCCc-Cccccc--cCCCcccCE--EECCCC-ccCccChhhhccCccCCEEECCCC-ceeEEChh----hhcCC----C
Confidence 666542 222222 233444444 555444 233333233444555555555543 33333222 23333 4
Q ss_pred CccEEEeccCCCCCCcccc-cCCCCCccEEEecC
Q 043667 265 RLEYLRLRYCKGLVKLPQS-SLSLSSLREIDIYD 297 (387)
Q Consensus 265 ~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~ 297 (387)
+|++|+++++ .++.++.. +..+++|+.|++++
T Consensus 256 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 256 SLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp TCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEECCCC-CCCccChhHhccccCCCEEEcCC
Confidence 5555555543 24444332 33445555555544
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=1.3e-15 Score=144.88 Aligned_cols=141 Identities=16% Similarity=0.187 Sum_probs=65.5
Q ss_pred cEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCccCCC
Q 043667 34 VTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFP 113 (387)
Q Consensus 34 ~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~ 113 (387)
..++..+ ..++.+|. +-.+++++|++.++ .++.++... +..+++|++|+++++ .+..... ..+..++
T Consensus 57 ~~v~c~~-~~l~~iP~-~~~~~l~~L~L~~n-~i~~~~~~~-----~~~l~~L~~L~Ls~n-~i~~~~~----~~~~~l~ 123 (452)
T 3zyi_A 57 SKVVCTR-RGLSEVPQ-GIPSNTRYLNLMEN-NIQMIQADT-----FRHLHHLEVLQLGRN-SIRQIEV----GAFNGLA 123 (452)
T ss_dssp CEEECCS-SCCSSCCS-CCCTTCSEEECCSS-CCCEECTTT-----TTTCTTCCEEECCSS-CCCEECT----TTTTTCT
T ss_pred cEEEECC-CCcCccCC-CCCCCccEEECcCC-cCceECHHH-----cCCCCCCCEEECCCC-ccCCcCh----hhccCcc
Confidence 4444443 24455553 11245666666666 444443332 234556666666543 2233222 3333456
Q ss_pred CcceEeeccCcccccccCC----CCCCccEEEeccCcccc---ccccCCCCcceEEEcCccceeE-e-cccccCCCCcEE
Q 043667 114 KLRELHILRCSKLQGTFPE----HLPALEMLVIEACKELS---VSVSSLPALCKLKIGGCKKVVW-R-SATDHLGSQNSV 184 (387)
Q Consensus 114 ~L~~L~l~~~~~l~~~~~~----~~~~L~~L~l~~~~~l~---~~~~~~~~L~~L~i~~~~~~~~-~-~~~~~~~~L~~L 184 (387)
+|++|+++++ .+. .++. .+++|+.|+++++.... ..+..+++|++|+++++..+.. . ..+..+++|++|
T Consensus 124 ~L~~L~L~~n-~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 124 SLNTLELFDN-WLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp TCCEEECCSS-CCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred cCCEEECCCC-cCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 6666666655 232 2221 23445555544433111 2345556666666665444441 1 123445556666
Q ss_pred eccCC
Q 043667 185 VCRDT 189 (387)
Q Consensus 185 ~l~~~ 189 (387)
+++++
T Consensus 202 ~L~~n 206 (452)
T 3zyi_A 202 NLGMC 206 (452)
T ss_dssp ECTTS
T ss_pred ECCCC
Confidence 55544
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=1.1e-15 Score=144.95 Aligned_cols=200 Identities=20% Similarity=0.231 Sum_probs=100.3
Q ss_pred ccCCCCcceEEEcCccceeEe-cccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccC
Q 043667 152 VSSLPALCKLKIGGCKKVVWR-SATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDI 230 (387)
Q Consensus 152 ~~~~~~L~~L~i~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~ 230 (387)
+..+++|++|+++++....+. ..+..+++|++|+++++ .+..++......+++|++ |.++++. +..++...+..+
T Consensus 84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~--L~L~~N~-i~~~~~~~~~~l 159 (440)
T 3zyj_A 84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKE--LWLRNNP-IESIPSYAFNRI 159 (440)
T ss_dssp TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCE--EECCSCC-CCEECTTTTTTC
T ss_pred hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCce--eeCCCCc-ccccCHHHhhhC
Confidence 444555555555544333322 23344555555555543 233333322344555555 5555432 334444445556
Q ss_pred CCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcC
Q 043667 231 CSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALP 310 (387)
Q Consensus 231 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 310 (387)
++|++|+++++..+..++.. .+..+ ++|++|++++| .++.+|. +..+++|+.|+++++ .++.++...+.
T Consensus 160 ~~L~~L~l~~~~~l~~i~~~----~~~~l----~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 228 (440)
T 3zyj_A 160 PSLRRLDLGELKRLSYISEG----AFEGL----SNLRYLNLAMC-NLREIPN-LTPLIKLDELDLSGN-HLSAIRPGSFQ 228 (440)
T ss_dssp TTCCEEECCCCTTCCEECTT----TTTTC----SSCCEEECTTS-CCSSCCC-CTTCSSCCEEECTTS-CCCEECTTTTT
T ss_pred cccCEeCCCCCCCcceeCcc----hhhcc----cccCeecCCCC-cCccccc-cCCCcccCEEECCCC-ccCccChhhhc
Confidence 66666666665555555443 23333 56666666654 3555553 455566666666653 55555433333
Q ss_pred --CCceEEEeccCCCCCccc-cccccCCCCCcceEecccCcccccccCC--CCCCCccEEeecCC
Q 043667 311 --SKLKKIEIRKCDALKSLP-EAWMCDTNSSLETLKIERCRSLTYIAGV--QLPPSLKRLDIWNC 370 (387)
Q Consensus 311 --~~L~~L~l~~c~~l~~l~-~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~C 370 (387)
++|++|+++++. ++.++ ..+..+++ |++|+++++ +++.++.. ..+++|++|+++++
T Consensus 229 ~l~~L~~L~L~~n~-l~~~~~~~~~~l~~--L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 229 GLMHLQKLWMIQSQ-IQVIERNAFDNLQS--LVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp TCTTCCEEECTTCC-CCEECTTSSTTCTT--CCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSS
T ss_pred cCccCCEEECCCCc-eeEEChhhhcCCCC--CCEEECCCC-CCCccChhHhccccCCCEEEcCCC
Confidence 566666666533 44443 23333444 666666663 55555543 33456666666553
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=2.8e-16 Score=144.68 Aligned_cols=263 Identities=17% Similarity=0.157 Sum_probs=123.7
Q ss_pred CCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCc
Q 043667 30 FSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGV 109 (387)
Q Consensus 30 l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i 109 (387)
++.....+.++ ..++.+|. +-.++|++|+++++ .++.++... +..+++|++|++.++ .+..... ..+
T Consensus 30 C~~~~~c~~~~-~~l~~iP~-~~~~~L~~L~l~~n-~i~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~----~~~ 96 (353)
T 2z80_A 30 CDRNGICKGSS-GSLNSIPS-GLTEAVKSLDLSNN-RITYISNSD-----LQRCVNLQALVLTSN-GINTIEE----DSF 96 (353)
T ss_dssp ECTTSEEECCS-TTCSSCCT-TCCTTCCEEECTTS-CCCEECTTT-----TTTCTTCCEEECTTS-CCCEECT----TTT
T ss_pred CCCCeEeeCCC-CCcccccc-cccccCcEEECCCC-cCcccCHHH-----hccCCCCCEEECCCC-ccCccCH----hhc
Confidence 44444555555 35666664 22346777777766 455555432 234566666666653 3333322 334
Q ss_pred cCCCCcceEeeccCcccccccC----CCCCCccEEEeccCcc--ccc--cccCCCCcceEEEcCccceeEecccccCCCC
Q 043667 110 EGFPKLRELHILRCSKLQGTFP----EHLPALEMLVIEACKE--LSV--SVSSLPALCKLKIGGCKKVVWRSATDHLGSQ 181 (387)
Q Consensus 110 ~~~~~L~~L~l~~~~~l~~~~~----~~~~~L~~L~l~~~~~--l~~--~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L 181 (387)
..+++|++|+++++ .++ .++ ..+++|+.|+++++.. ++. .+..+++|++|+++++
T Consensus 97 ~~l~~L~~L~Ls~n-~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n--------------- 159 (353)
T 2z80_A 97 SSLGSLEHLDLSYN-YLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM--------------- 159 (353)
T ss_dssp TTCTTCCEEECCSS-CCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES---------------
T ss_pred CCCCCCCEEECCCC-cCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCC---------------
Confidence 45666777777665 222 222 1244455555544321 111 2444555555555544
Q ss_pred cEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhh
Q 043667 182 NSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCE 261 (387)
Q Consensus 182 ~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~ 261 (387)
..+..++......+++|++ +.++++. +..+....++.+++|++|+++++. +..++.. .+..+
T Consensus 160 --------~~~~~~~~~~~~~l~~L~~--L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~----~~~~~-- 221 (353)
T 2z80_A 160 --------DTFTKIQRKDFAGLTFLEE--LEIDASD-LQSYEPKSLKSIQNVSHLILHMKQ-HILLLEI----FVDVT-- 221 (353)
T ss_dssp --------SSCCEECTTTTTTCCEEEE--EEEEETT-CCEECTTTTTTCSEEEEEEEECSC-STTHHHH----HHHHT--
T ss_pred --------ccccccCHHHccCCCCCCE--EECCCCC-cCccCHHHHhccccCCeecCCCCc-cccchhh----hhhhc--
Confidence 3233322222334444444 4444433 222222224556666666666643 3433322 12223
Q ss_pred ccCCccEEEeccCCCCCCccc-c---cCCCCCccEEEecCCCCcee-----cCCC-CcCCCceEEEeccCCCCCcccccc
Q 043667 262 LSCRLEYLRLRYCKGLVKLPQ-S---SLSLSSLREIDIYDCSSLVS-----FPEV-ALPSKLKKIEIRKCDALKSLPEAW 331 (387)
Q Consensus 262 ~~~~L~~L~l~~c~~l~~~~~-~---~~~~~~L~~L~l~~c~~l~~-----~~~~-~~~~~L~~L~l~~c~~l~~l~~~~ 331 (387)
++|++|+++++. ++.++. . ....+.++.++++++ .+.. ++.. ...++|++|+++++ .++.+|..+
T Consensus 222 --~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~ 296 (353)
T 2z80_A 222 --SSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGI 296 (353)
T ss_dssp --TTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTT
T ss_pred --ccccEEECCCCc-cccccccccccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHH
Confidence 666666666643 333221 1 123445556666553 2222 1110 11256666666664 355666542
Q ss_pred -ccCCCCCcceEecccC
Q 043667 332 -MCDTNSSLETLKIERC 347 (387)
Q Consensus 332 -~~~~~~~L~~L~l~~c 347 (387)
..+++ |++|+++++
T Consensus 297 ~~~l~~--L~~L~L~~N 311 (353)
T 2z80_A 297 FDRLTS--LQKIWLHTN 311 (353)
T ss_dssp TTTCTT--CCEEECCSS
T ss_pred HhcCCC--CCEEEeeCC
Confidence 44455 666666664
No 57
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=7.9e-19 Score=172.90 Aligned_cols=348 Identities=12% Similarity=0.049 Sum_probs=198.4
Q ss_pred CCCCCcEEEEcCcCC----CCCCCccCC-c---------cCCCccEEEeecCCCCCCC--CCcCC-cCC-CcEEEecCCC
Q 043667 4 PHKNLEQFCISGYRG----AKFPTWFGD-S---------SFSNLVTLKFEYCGMCPTL--PSVGQ-LPS-LKHLAVCGMT 65 (387)
Q Consensus 4 ~~~~L~~L~l~~~~~----~~~p~~~~~-~---------~l~~L~~L~l~~c~~~~~l--~~~~~-l~~-L~~L~l~~~~ 65 (387)
.+++|++|+++++.. ...|...+. . .+++|++|++++| .+++. ..++. +++ |++|++.+|.
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~ 149 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCS 149 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCC
Confidence 356788888876432 112222210 0 3778888888876 33321 12344 444 8888888875
Q ss_pred CceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCccc--c-cccC---CCCCCccE
Q 043667 66 SVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKL--Q-GTFP---EHLPALEM 139 (387)
Q Consensus 66 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l--~-~~~~---~~~~~L~~ 139 (387)
.+...+... ....+++|++|++.++.- .+............+++|+.|+++++..- . ..++ ..+++|+.
T Consensus 150 ~~~~~~l~~----~~~~~~~L~~L~L~~~~~-~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 150 GFTTDGLLS----IVTHCRKIKTLLMEESSF-SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp EEEHHHHHH----HHHHCTTCSEEECTTCEE-ECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred CcCHHHHHH----HHhhCCCCCEEECccccc-cCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 322111100 013568888888887631 11100000001114678888888765321 0 1122 24678888
Q ss_pred EEeccCcc--ccccccCCCCcceEEEcCccce----eEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEE
Q 043667 140 LVIEACKE--LSVSVSSLPALCKLKIGGCKKV----VWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILST 213 (387)
Q Consensus 140 L~l~~~~~--l~~~~~~~~~L~~L~i~~~~~~----~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l 213 (387)
|++.+|.. +...+..+++|++|.+..+... .....+..+++|+.+.++++. ...++.. ...+++|++ |.+
T Consensus 225 L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~-~~~~~~L~~--L~L 300 (592)
T 3ogk_B 225 VKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPIL-FPFAAQIRK--LDL 300 (592)
T ss_dssp EECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGG-GGGGGGCCE--EEE
T ss_pred EeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHH-HhhcCCCcE--Eec
Confidence 88887653 3345666788888888753222 122334556788888777642 1222222 345677888 888
Q ss_pred cCCCCccc-ccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEecc----------CCCCCC--c
Q 043667 214 KEQTYIWK-SHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRY----------CKGLVK--L 280 (387)
Q Consensus 214 ~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~----------c~~l~~--~ 280 (387)
.+|. +.. ....+++.+++|++|++.+ .+.+ . .+..+...+++|++|++.+ |..++. +
T Consensus 301 s~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~---~----~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~ 370 (592)
T 3ogk_B 301 LYAL-LETEDHCTLIQKCPNLEVLETRN--VIGD---R----GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370 (592)
T ss_dssp TTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHH---H----HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH
T ss_pred CCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCH---H----HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH
Confidence 8877 432 1222346788999999883 2222 1 1222222348999999995 766653 2
Q ss_pred ccccCCCCCccEEEecCCCCceecCCCCc---CCCceEEEecc---CCCCCccc------cccccCCCCCcceEecccCc
Q 043667 281 PQSSLSLSSLREIDIYDCSSLVSFPEVAL---PSKLKKIEIRK---CDALKSLP------EAWMCDTNSSLETLKIERCR 348 (387)
Q Consensus 281 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~---~~~L~~L~l~~---c~~l~~l~------~~~~~~~~~~L~~L~l~~c~ 348 (387)
......+++|+.|++ +|++++......+ .++|++|++.+ |+.+++.| ..+..+++ |++|++++|.
T Consensus 371 ~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~--L~~L~L~~~~ 447 (592)
T 3ogk_B 371 IALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK--LRRFAFYLRQ 447 (592)
T ss_dssp HHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTT--CCEEEEECCG
T ss_pred HHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCC--CCEEEEecCC
Confidence 223446899999999 4567654321111 37899999984 56777643 22444666 9999998876
Q ss_pred c-cccccCC---CCCCCccEEeecCCccccc
Q 043667 349 S-LTYIAGV---QLPPSLKRLDIWNCDNIRT 375 (387)
Q Consensus 349 ~-l~~~~~~---~~~~~L~~L~l~~C~~l~~ 375 (387)
+ +++.... ...++|++|++++|. ++.
T Consensus 448 ~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~ 477 (592)
T 3ogk_B 448 GGLTDLGLSYIGQYSPNVRWMLLGYVG-ESD 477 (592)
T ss_dssp GGCCHHHHHHHHHSCTTCCEEEECSCC-SSH
T ss_pred CCccHHHHHHHHHhCccceEeeccCCC-CCH
Confidence 4 4432211 346889999999875 543
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=2.2e-16 Score=145.27 Aligned_cols=271 Identities=17% Similarity=0.079 Sum_probs=173.2
Q ss_pred CCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCC
Q 043667 54 PSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEH 133 (387)
Q Consensus 54 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~ 133 (387)
+.....+.++. .++.+|..+ .++|++|+++++. +..... ..+..+++|+.|+++++ .+.+..+
T Consensus 31 ~~~~~c~~~~~-~l~~iP~~~--------~~~L~~L~l~~n~-i~~~~~----~~~~~l~~L~~L~L~~n-~l~~~~~-- 93 (353)
T 2z80_A 31 DRNGICKGSSG-SLNSIPSGL--------TEAVKSLDLSNNR-ITYISN----SDLQRCVNLQALVLTSN-GINTIEE-- 93 (353)
T ss_dssp CTTSEEECCST-TCSSCCTTC--------CTTCCEEECTTSC-CCEECT----TTTTTCTTCCEEECTTS-CCCEECT--
T ss_pred CCCeEeeCCCC-Ccccccccc--------cccCcEEECCCCc-CcccCH----HHhccCCCCCEEECCCC-ccCccCH--
Confidence 33334444444 455555432 3466666666532 333322 23344566666666554 2221111
Q ss_pred CCCccEEEeccCccccccccCCCCcceEEEcCccceeEecc-cccCCCCcEEeccCCCCcccccC-CCCCCCccccceeE
Q 043667 134 LPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSA-TDHLGSQNSVVCRDTSNQVFLAG-PLKPQLPKLEELIL 211 (387)
Q Consensus 134 ~~~L~~L~l~~~~~l~~~~~~~~~L~~L~i~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~-~~~~~l~~L~~l~L 211 (387)
..+..+++|++|+++++....++.. +..+++|++|+++++. +..++. .....+++|++ +
T Consensus 94 ----------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~--L 154 (353)
T 2z80_A 94 ----------------DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQI--L 154 (353)
T ss_dssp ----------------TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCE--E
T ss_pred ----------------hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcE--E
Confidence 2355566677777766544333322 4567778888887653 334444 23567888888 9
Q ss_pred EEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccc-cCCCCCc
Q 043667 212 STKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS-SLSLSSL 290 (387)
Q Consensus 212 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L 290 (387)
.+.++..++.++...++.+++|++|+++++. +..+.+. .+..+ ++|++|+++++. ++.++.. +..+++|
T Consensus 155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~----~l~~l----~~L~~L~l~~n~-l~~~~~~~~~~~~~L 224 (353)
T 2z80_A 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPK----SLKSI----QNVSHLILHMKQ-HILLLEIFVDVTSSV 224 (353)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTT----TTTTC----SEEEEEEEECSC-STTHHHHHHHHTTTE
T ss_pred ECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHH----HHhcc----ccCCeecCCCCc-cccchhhhhhhcccc
Confidence 9988877777766667889999999999864 4444332 35555 899999999865 6766654 3458999
Q ss_pred cEEEecCCCCceecCCCC-----cCCCceEEEeccCCCCC-----ccccccccCCCCCcceEecccCcccccccCC--CC
Q 043667 291 REIDIYDCSSLVSFPEVA-----LPSKLKKIEIRKCDALK-----SLPEAWMCDTNSSLETLKIERCRSLTYIAGV--QL 358 (387)
Q Consensus 291 ~~L~l~~c~~l~~~~~~~-----~~~~L~~L~l~~c~~l~-----~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~ 358 (387)
+.|+++++ .++.++... ....++.+++.++. +. .+|..+..+++ |++|+++++ +++.++.. ..
T Consensus 225 ~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~~l~~--L~~L~Ls~N-~l~~i~~~~~~~ 299 (353)
T 2z80_A 225 ECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVK-ITDESLFQVMKLLNQISG--LLELEFSRN-QLKSVPDGIFDR 299 (353)
T ss_dssp EEEEEESC-BCTTCCCC------CCCCCCEEEEESCB-CCHHHHHHHHHHHHTCTT--CCEEECCSS-CCCCCCTTTTTT
T ss_pred cEEECCCC-ccccccccccccccccchhhcccccccc-ccCcchhhhHHHHhcccC--CCEEECCCC-CCCccCHHHHhc
Confidence 99999984 565544322 23678888888754 43 35666666777 999999996 88888876 46
Q ss_pred CCCccEEeecCCccccc
Q 043667 359 PPSLKRLDIWNCDNIRT 375 (387)
Q Consensus 359 ~~~L~~L~l~~C~~l~~ 375 (387)
+++|++|++++++-...
T Consensus 300 l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 300 LTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CTTCCEEECCSSCBCCC
T ss_pred CCCCCEEEeeCCCccCc
Confidence 78999999999764433
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=1.3e-15 Score=144.96 Aligned_cols=200 Identities=20% Similarity=0.214 Sum_probs=97.6
Q ss_pred ccCCCCcceEEEcCccceeEe-cccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccC
Q 043667 152 VSSLPALCKLKIGGCKKVVWR-SATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDI 230 (387)
Q Consensus 152 ~~~~~~L~~L~i~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~ 230 (387)
+..+++|++|+++++....+. ..+..+++|++|+++++. +..++......+++|++ |.++++. ++.++...+..+
T Consensus 95 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~--L~L~~N~-l~~~~~~~~~~l 170 (452)
T 3zyi_A 95 FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRE--LWLRNNP-IESIPSYAFNRV 170 (452)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCE--EECCSCC-CCEECTTTTTTC
T ss_pred cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCE--EECCCCC-cceeCHhHHhcC
Confidence 444455555555544333322 233444555555555432 23333222344455555 5555432 334444445555
Q ss_pred CCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcC
Q 043667 231 CSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALP 310 (387)
Q Consensus 231 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 310 (387)
++|++|+++++..++.++.. .+..+ ++|++|++++| .++.++ .+..+++|+.|++++ +.++.++...+.
T Consensus 171 ~~L~~L~l~~~~~l~~i~~~----~~~~l----~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~-N~l~~~~~~~~~ 239 (452)
T 3zyi_A 171 PSLMRLDLGELKKLEYISEG----AFEGL----FNLKYLNLGMC-NIKDMP-NLTPLVGLEELEMSG-NHFPEIRPGSFH 239 (452)
T ss_dssp TTCCEEECCCCTTCCEECTT----TTTTC----TTCCEEECTTS-CCSSCC-CCTTCTTCCEEECTT-SCCSEECGGGGT
T ss_pred CcccEEeCCCCCCccccChh----hccCC----CCCCEEECCCC-cccccc-cccccccccEEECcC-CcCcccCccccc
Confidence 66666666665555555443 23333 56666666553 344444 245556666666665 344444333332
Q ss_pred --CCceEEEeccCCCCCcc-ccccccCCCCCcceEecccCcccccccCC--CCCCCccEEeecCC
Q 043667 311 --SKLKKIEIRKCDALKSL-PEAWMCDTNSSLETLKIERCRSLTYIAGV--QLPPSLKRLDIWNC 370 (387)
Q Consensus 311 --~~L~~L~l~~c~~l~~l-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~C 370 (387)
++|+.|+++++. +..+ +..+..+.+ |++|+++++ +++.++.. ..+++|++|+++++
T Consensus 240 ~l~~L~~L~L~~n~-l~~~~~~~~~~l~~--L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQ-VSLIERNAFDGLAS--LVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp TCTTCCEEECTTSC-CCEECTTTTTTCTT--CCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSS
T ss_pred CccCCCEEEeCCCc-CceECHHHhcCCCC--CCEEECCCC-cCCccChHHhccccCCCEEEccCC
Confidence 566666665533 4433 233333444 666666663 55555543 33455666666553
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.70 E-value=2.2e-19 Score=171.50 Aligned_cols=153 Identities=14% Similarity=0.166 Sum_probs=78.9
Q ss_pred CCCCcEEEEcCcCCCCCC--CccCCccCCCccEEEeecCCCCCC-----CCC-cCCcCCCcEEEecCCCCceEeCccccC
Q 043667 5 HKNLEQFCISGYRGAKFP--TWFGDSSFSNLVTLKFEYCGMCPT-----LPS-VGQLPSLKHLAVCGMTSVKRLGSEFYG 76 (387)
Q Consensus 5 ~~~L~~L~l~~~~~~~~p--~~~~~~~l~~L~~L~l~~c~~~~~-----l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~ 76 (387)
+++|++|+++++.....+ ..+.. +++|++|++++| .++. ++. +..+++|++|+++++ .+.......+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~--~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l- 76 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPL--LQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCV- 76 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHH--HTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHH-
T ss_pred CccceehhhhhcccCchhHHHHHhh--cCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHH-
Confidence 456777888777654332 11222 777888888776 3442 222 556677888888776 3333211110
Q ss_pred CCcccCCC----CcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccc--------cCCCCCCccEEEecc
Q 043667 77 KGAAIPFP----RLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGT--------FPEHLPALEMLVIEA 144 (387)
Q Consensus 77 ~~~~~~~~----~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~--------~~~~~~~L~~L~l~~ 144 (387)
...++ +|++|++.++. +.+.........+..+++|++|+++++. +.+. +....++|++|++++
T Consensus 77 ---~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~ 151 (461)
T 1z7x_W 77 ---LQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEY 151 (461)
T ss_dssp ---HHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred ---HHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCC
Confidence 01223 57777777654 2211100000223356777777777663 2211 112234577777766
Q ss_pred Cccc-------cccccCCCCcceEEEcCcc
Q 043667 145 CKEL-------SVSVSSLPALCKLKIGGCK 167 (387)
Q Consensus 145 ~~~l-------~~~~~~~~~L~~L~i~~~~ 167 (387)
|..- ...+..+++|++|+++++.
T Consensus 152 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 152 CSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred CCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 6422 1233445667777776654
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=2.2e-17 Score=149.73 Aligned_cols=240 Identities=12% Similarity=0.108 Sum_probs=127.0
Q ss_pred CCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCC
Q 043667 30 FSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQ 107 (387)
Q Consensus 30 l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 107 (387)
+++|++|++++| .++.+++ ++.+++|++|+++++ .+..++. +..+++|++|+++++. +.....
T Consensus 33 ~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-------~~~l~~L~~L~Ls~n~-l~~l~~----- 97 (317)
T 3o53_A 33 AWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSN-VLYETLD-------LESLSTLRTLDLNNNY-VQELLV----- 97 (317)
T ss_dssp GGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-------ETTCTTCCEEECCSSE-EEEEEE-----
T ss_pred CCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-------hhhcCCCCEEECcCCc-cccccC-----
Confidence 678999999986 6666663 888999999999998 5554432 2356777777777642 333322
Q ss_pred CccCCCCcceEeeccCcccccccCCCCCCccEEEeccCccccccccCCCCcceEEEcCccceeE-ecccccCCCCcEEec
Q 043667 108 GVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVW-RSATDHLGSQNSVVC 186 (387)
Q Consensus 108 ~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~i~~~~~~~~-~~~~~~~~~L~~L~l 186 (387)
.++|+.|+++++ .+.+..+..+++|+.|+++++. .... ...+..+++|++|++
T Consensus 98 ----~~~L~~L~l~~n-~l~~~~~~~~~~L~~L~l~~N~---------------------l~~~~~~~~~~l~~L~~L~L 151 (317)
T 3o53_A 98 ----GPSIETLHAANN-NISRVSCSRGQGKKNIYLANNK---------------------ITMLRDLDEGCRSRVQYLDL 151 (317)
T ss_dssp ----CTTCCEEECCSS-CCSEEEECCCSSCEEEECCSSC---------------------CCSGGGBCTGGGSSEEEEEC
T ss_pred ----CCCcCEEECCCC-ccCCcCccccCCCCEEECCCCC---------------------CCCccchhhhccCCCCEEEC
Confidence 467777777765 3332333334455555554433 2211 112223344444444
Q ss_pred cCCCCcccccCCCCCCCccccceeEEEcCCCCcccc-cccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCC
Q 043667 187 RDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKS-HDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCR 265 (387)
Q Consensus 187 ~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~ 265 (387)
+++. +..+ +..+.+.+++|++|+++++ .+..++.. ..+ ++
T Consensus 152 s~N~----------------------------l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~------~~l----~~ 192 (317)
T 3o53_A 152 KLNE----------------------------IDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ------VVF----AK 192 (317)
T ss_dssp TTSC----------------------------CCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC------CCC----TT
T ss_pred CCCC----------------------------CCcccHHHHhhccCcCCEEECCCC-cCcccccc------ccc----cc
Confidence 4321 1111 1111223455666666553 23333221 111 56
Q ss_pred ccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCC-cCCCceEEEeccCCCC-CccccccccCCCCCcceEe
Q 043667 266 LEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVA-LPSKLKKIEIRKCDAL-KSLPEAWMCDTNSSLETLK 343 (387)
Q Consensus 266 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~L~~L~l~~c~~l-~~l~~~~~~~~~~~L~~L~ 343 (387)
|++|+++++ .++.+++.+..+++|+.|++++ +.++.++... ..++|+.|++++++-. ..++..+..... |+.++
T Consensus 193 L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~--L~~l~ 268 (317)
T 3o53_A 193 LKTLDLSSN-KLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR--VQTVA 268 (317)
T ss_dssp CCEEECCSS-CCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH--HHHHH
T ss_pred CCEEECCCC-cCCcchhhhcccCcccEEECcC-CcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhcccc--ceEEE
Confidence 666666653 3555555555666666666666 3555555431 1256666666665422 234444444555 67777
Q ss_pred cccCcccccc
Q 043667 344 IERCRSLTYI 353 (387)
Q Consensus 344 l~~c~~l~~~ 353 (387)
+.+++.++..
T Consensus 269 l~~~~~l~~~ 278 (317)
T 3o53_A 269 KQTVKKLTGQ 278 (317)
T ss_dssp HHHHHHHHSS
T ss_pred CCCchhccCC
Confidence 7665555443
No 62
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=1.5e-18 Score=170.90 Aligned_cols=221 Identities=16% Similarity=0.154 Sum_probs=141.1
Q ss_pred CCCccEEEeecCCCCCCCCC----------------cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccc
Q 043667 30 FSNLVTLKFEYCGMCPTLPS----------------VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDA 93 (387)
Q Consensus 30 l~~L~~L~l~~c~~~~~l~~----------------~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 93 (387)
+++|++|++++|..+.++.. ...+++|++|+++++. +.......+ ...+++|++|++.+
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l----~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELI----AKSFKNFKVLVLSS 139 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHH----HHHCTTCCEEEEES
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHH----HHhCCCCcEEeCCC
Confidence 89999999999876543321 2358899999999983 333222111 12589999999999
Q ss_pred cCCccccccCcCCCCcc-CCCCcceEeeccCccccc-------ccCCCCCCccEEEeccCc-ccc-----ccccCCCCcc
Q 043667 94 MLGWEDWIPLRSGQGVE-GFPKLRELHILRCSKLQG-------TFPEHLPALEMLVIEACK-ELS-----VSVSSLPALC 159 (387)
Q Consensus 94 ~~~l~~~~~~~~~~~i~-~~~~L~~L~l~~~~~l~~-------~~~~~~~~L~~L~l~~~~-~l~-----~~~~~~~~L~ 159 (387)
|..+..... ..+. .+++|++|++++|. +++ .++..+++|+.|++++|. .+. ..+..+++|+
T Consensus 140 ~~~~~~~~l----~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~ 214 (594)
T 2p1m_B 140 CEGFSTDGL----AAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK 214 (594)
T ss_dssp CEEEEHHHH----HHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCC
T ss_pred cCCCCHHHH----HHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCc
Confidence 876554322 2222 58999999999875 321 344567899999999886 222 2234579999
Q ss_pred eEEEcCcccee-EecccccCCCCcEEeccCC-------------------CCccccc---CCC-------CCCCccccce
Q 043667 160 KLKIGGCKKVV-WRSATDHLGSQNSVVCRDT-------------------SNQVFLA---GPL-------KPQLPKLEEL 209 (387)
Q Consensus 160 ~L~i~~~~~~~-~~~~~~~~~~L~~L~l~~~-------------------~~l~~~~---~~~-------~~~l~~L~~l 209 (387)
+|++.+|.... ++..+..+++|++|.+.++ .++..+. ... ...+++|++
T Consensus 215 ~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~- 293 (594)
T 2p1m_B 215 SLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTT- 293 (594)
T ss_dssp EEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCE-
T ss_pred EEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCE-
Confidence 99999884433 4445566788998875544 3222221 000 114577888
Q ss_pred eEEEcCCCCccc-ccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEec
Q 043667 210 ILSTKEQTYIWK-SHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLR 272 (387)
Q Consensus 210 ~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~ 272 (387)
|.+..|. ++. ....++..+++|++|++.+| +.+ . .+..+...+++|++|++.
T Consensus 294 -L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~---~----~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 294 -LNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IED---A----GLEVLASTCKDLRELRVF 346 (594)
T ss_dssp -EECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHH---H----HHHHHHHHCTTCCEEEEE
T ss_pred -EEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCH---H----HHHHHHHhCCCCCEEEEe
Confidence 8888877 432 12223457899999999976 221 1 122222224788888884
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=1.8e-18 Score=165.03 Aligned_cols=343 Identities=17% Similarity=0.136 Sum_probs=221.3
Q ss_pred CCCCCcEEEEcCcCCC-----CCCCccCCccCCCccEEEeecCCCCCCCC--C-cCCcC----CCcEEEecCCCCceEeC
Q 043667 4 PHKNLEQFCISGYRGA-----KFPTWFGDSSFSNLVTLKFEYCGMCPTLP--S-VGQLP----SLKHLAVCGMTSVKRLG 71 (387)
Q Consensus 4 ~~~~L~~L~l~~~~~~-----~~p~~~~~~~l~~L~~L~l~~c~~~~~l~--~-~~~l~----~L~~L~l~~~~~l~~~~ 71 (387)
.+++|++|+++++... .++..+.. +++|++|+++++ .+++.. . ...++ +|++|++++| .+...+
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~--~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~ 101 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRV--NPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAG 101 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHT--CTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGG
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHh--CCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHH
Confidence 3578999999999876 34555555 799999999986 454321 1 22344 7999999999 454322
Q ss_pred ccccCCCcccCCCCcceeeccccCCccccccCcCCCCcc-----CCCCcceEeeccCcccccc----cCC---CCCCccE
Q 043667 72 SEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVE-----GFPKLRELHILRCSKLQGT----FPE---HLPALEM 139 (387)
Q Consensus 72 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~-----~~~~L~~L~l~~~~~l~~~----~~~---~~~~L~~ 139 (387)
..... ..+..+++|++|+++++. +.+... ..+. ..++|++|+++++ .+.+. ++. .+++|+.
T Consensus 102 ~~~l~-~~l~~~~~L~~L~Ls~n~-i~~~~~----~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~ 174 (461)
T 1z7x_W 102 CGVLS-STLRTLPTLQELHLSDNL-LGDAGL----QLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKE 174 (461)
T ss_dssp HHHHH-HHTTSCTTCCEEECCSSB-CHHHHH----HHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHH-HHHccCCceeEEECCCCc-CchHHH----HHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCE
Confidence 00000 013568999999999865 332211 1111 2568999999988 33321 222 3689999
Q ss_pred EEeccCcccc---ccc-----cCCCCcceEEEcCcccee-----EecccccCCCCcEEeccCCCCcccc-----cCCCCC
Q 043667 140 LVIEACKELS---VSV-----SSLPALCKLKIGGCKKVV-----WRSATDHLGSQNSVVCRDTSNQVFL-----AGPLKP 201 (387)
Q Consensus 140 L~l~~~~~l~---~~~-----~~~~~L~~L~i~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~ 201 (387)
|+++++..-. ..+ ...++|++|+++++.... +...+..+++|++|+++++. +... ......
T Consensus 175 L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~ 253 (461)
T 1z7x_W 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLH 253 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTS
T ss_pred EECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhc
Confidence 9999986322 111 135699999999885433 34455678999999999874 2221 111123
Q ss_pred CCccccceeEEEcCCCCccc-----ccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCC
Q 043667 202 QLPKLEELILSTKEQTYIWK-----SHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKG 276 (387)
Q Consensus 202 ~l~~L~~l~L~l~~~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~ 276 (387)
.+++|++ +.+++|. ++. ++.. +..+++|++|+++++ .+.......+...+ ....++|++|++++|.
T Consensus 254 ~~~~L~~--L~L~~n~-l~~~~~~~l~~~-l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l---~~~~~~L~~L~L~~n~- 324 (461)
T 1z7x_W 254 PSSRLRT--LWIWECG-ITAKGCGDLCRV-LRAKESLKELSLAGN-ELGDEGARLLCETL---LEPGCQLESLWVKSCS- 324 (461)
T ss_dssp TTCCCCE--EECTTSC-CCHHHHHHHHHH-HHHCTTCCEEECTTC-CCHHHHHHHHHHHH---TSTTCCCCEEECTTSC-
T ss_pred CCCCceE--EECcCCC-CCHHHHHHHHHH-HhhCCCcceEECCCC-CCchHHHHHHHHHh---ccCCccceeeEcCCCC-
Confidence 4678888 9999884 443 3333 566899999999986 44443322211111 1122699999999976
Q ss_pred CCC-----cccccCCCCCccEEEecCCCCceecCCCC----c---CCCceEEEeccCCCCC-----ccccccccCCCCCc
Q 043667 277 LVK-----LPQSSLSLSSLREIDIYDCSSLVSFPEVA----L---PSKLKKIEIRKCDALK-----SLPEAWMCDTNSSL 339 (387)
Q Consensus 277 l~~-----~~~~~~~~~~L~~L~l~~c~~l~~~~~~~----~---~~~L~~L~l~~c~~l~-----~l~~~~~~~~~~~L 339 (387)
++. ++..+..+++|+.|+++++ .++...... + .++|++|++++|. ++ .++..+..+++ |
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~--L 400 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHS--L 400 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCC--C
T ss_pred CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCC--c
Confidence 443 3455667899999999985 665532111 1 3699999999975 66 56776666777 9
Q ss_pred ceEecccCcccccccCC-------CCCCCccEEeecCCcc
Q 043667 340 ETLKIERCRSLTYIAGV-------QLPPSLKRLDIWNCDN 372 (387)
Q Consensus 340 ~~L~l~~c~~l~~~~~~-------~~~~~L~~L~l~~C~~ 372 (387)
++|++++| .+++.... ....+|+.|++.++..
T Consensus 401 ~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 401 RELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp CEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred cEEECCCC-CCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence 99999996 56543211 2234688888877543
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=1.3e-15 Score=137.22 Aligned_cols=98 Identities=16% Similarity=0.129 Sum_probs=72.9
Q ss_pred CcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeC---ccccCCCcccC
Q 043667 8 LEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLG---SEFYGKGAAIP 82 (387)
Q Consensus 8 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~~~~~ 82 (387)
-+.++.++.....+|..+ .++|++|+++++ .++.+|. ++++++|++|++.++ .+..++ .. ...
T Consensus 9 ~~~l~c~~~~l~~ip~~~----~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~------~~~ 76 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGI----PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQS------DFG 76 (306)
T ss_dssp TTEEECCSSCCSSCCSCC----CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHH------HHS
T ss_pred CCEEEcCCCCcccCCCCC----CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCC-ccCcccCcccc------ccc
Confidence 356777888888888754 468999999996 6778886 789999999999998 555442 22 235
Q ss_pred CCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccC
Q 043667 83 FPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRC 123 (387)
Q Consensus 83 ~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~ 123 (387)
+++|++|+++++. +.... ..+..+++|++|+++++
T Consensus 77 ~~~L~~L~Ls~n~-i~~l~-----~~~~~l~~L~~L~l~~n 111 (306)
T 2z66_A 77 TTSLKYLDLSFNG-VITMS-----SNFLGLEQLEHLDFQHS 111 (306)
T ss_dssp CSCCCEEECCSCS-EEEEE-----EEEETCTTCCEEECTTS
T ss_pred ccccCEEECCCCc-cccCh-----hhcCCCCCCCEEECCCC
Confidence 7999999999754 33222 22446899999999887
No 65
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=1.5e-15 Score=131.84 Aligned_cols=179 Identities=16% Similarity=0.136 Sum_probs=117.1
Q ss_pred cCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHH
Q 043667 177 HLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQ 256 (387)
Q Consensus 177 ~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 256 (387)
.+++|++|+++++..+..++......+++|++ +.+.+|..++.++...++.+++|++|+++++ .+..++. +
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~--L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~------~ 123 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTH--IEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD------L 123 (239)
T ss_dssp TCTTCCEEEEECCSSCCEECTTTEESCTTCCE--EEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCC------C
T ss_pred CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcE--EECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccc------c
Confidence 34444444444443233333222334455555 6665545555666555677888888888875 3444442 2
Q ss_pred hhhhhccCCcc---EEEeccCCCCCCcccc-cCCCCCcc-EEEecCCCCceecCCCCcC-CCceEEEeccCCCCCcccc-
Q 043667 257 QQLCELSCRLE---YLRLRYCKGLVKLPQS-SLSLSSLR-EIDIYDCSSLVSFPEVALP-SKLKKIEIRKCDALKSLPE- 329 (387)
Q Consensus 257 ~~l~~~~~~L~---~L~l~~c~~l~~~~~~-~~~~~~L~-~L~l~~c~~l~~~~~~~~~-~~L~~L~l~~c~~l~~l~~- 329 (387)
..+ ++|+ +|++++++.++.++.. +..+++|+ .|++++ +.++.++...+. ++|++|+++++..++.++.
T Consensus 124 ~~l----~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~ 198 (239)
T 2xwt_C 124 TKV----YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKD 198 (239)
T ss_dssp TTC----CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTTCEEEEEECTTCTTCCEECTT
T ss_pred ccc----cccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCCCCCCEEEcCCCCCcccCCHH
Confidence 333 5666 8899887567777754 67888899 999987 577788766554 6899999988756888764
Q ss_pred ccccC-CCCCcceEecccCcccccccCCCCCCCccEEeecCCccc
Q 043667 330 AWMCD-TNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNI 373 (387)
Q Consensus 330 ~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~C~~l 373 (387)
.+... .+ |++|++++ ++++.++.. .+++|++|+++++..|
T Consensus 199 ~~~~l~~~--L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 199 AFGGVYSG--PSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp TTTTCSBC--CSEEECTT-CCCCCCCCT-TCTTCSEEECTTC---
T ss_pred HhhccccC--CcEEECCC-CccccCChh-HhccCceeeccCccCC
Confidence 44555 66 99999998 578888765 6788999999887654
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.65 E-value=8.4e-15 Score=130.56 Aligned_cols=213 Identities=17% Similarity=0.123 Sum_probs=128.2
Q ss_pred ceEeeccCcccccccCCC-CCCccEEEeccCcccc---ccccCCCCcceEEEcCccceeE-ecccccCCCCcEEeccCCC
Q 043667 116 RELHILRCSKLQGTFPEH-LPALEMLVIEACKELS---VSVSSLPALCKLKIGGCKKVVW-RSATDHLGSQNSVVCRDTS 190 (387)
Q Consensus 116 ~~L~l~~~~~l~~~~~~~-~~~L~~L~l~~~~~l~---~~~~~~~~L~~L~i~~~~~~~~-~~~~~~~~~L~~L~l~~~~ 190 (387)
+.++.++. .++ .+|.. .++|+.|+++++..-. ..+..+++|++|+++++....+ +..+..+++|++|+++++.
T Consensus 14 ~~~~c~~~-~l~-~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQ-GLQ-AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSS-CCS-SCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcC-Ccc-cCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 34544443 344 45543 4588888888865322 3467788888888887755443 3456667888888888776
Q ss_pred CcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEE
Q 043667 191 NQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLR 270 (387)
Q Consensus 191 ~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~ 270 (387)
.+..+.......+++|++ +.+.++. +..++...++.+++|++|+++++ .+..++.. .+..+ ++|++|+
T Consensus 92 ~l~~~~~~~~~~l~~L~~--L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~----~~~~l----~~L~~L~ 159 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHT--LHLDRCG-LQELGPGLFRGLAALQYLYLQDN-ALQALPDD----TFRDL----GNLTHLF 159 (285)
T ss_dssp TCCCCCTTTTTTCTTCCE--EECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT----TTTTC----TTCCEEE
T ss_pred CccccCHHHhcCCcCCCE--EECCCCc-CCEECHhHhhCCcCCCEEECCCC-cccccCHh----HhccC----CCccEEE
Confidence 555554333556667776 7776654 33343334566777777777764 34444332 23444 6777777
Q ss_pred eccCCCCCCccc-ccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCcccc-ccccCCCCCcceEeccc
Q 043667 271 LRYCKGLVKLPQ-SSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPE-AWMCDTNSSLETLKIER 346 (387)
Q Consensus 271 l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~-~~~~~~~~~L~~L~l~~ 346 (387)
++++ .++.++. .+..+++|+.|+++++ .++.+....+. ++|++|+++++ .++.++. .+..+++ |++|++++
T Consensus 160 l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~--L~~L~l~~ 234 (285)
T 1ozn_A 160 LHGN-RISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRA--LQYLRLND 234 (285)
T ss_dssp CCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTT--CCEEECCS
T ss_pred CCCC-cccccCHHHhcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcc--cCEEeccC
Confidence 7764 4555554 3566777777777763 45555333332 67777777764 3555553 3444555 77777776
Q ss_pred C
Q 043667 347 C 347 (387)
Q Consensus 347 c 347 (387)
+
T Consensus 235 N 235 (285)
T 1ozn_A 235 N 235 (285)
T ss_dssp S
T ss_pred C
Confidence 4
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.65 E-value=2.3e-14 Score=127.66 Aligned_cols=214 Identities=17% Similarity=0.128 Sum_probs=132.1
Q ss_pred cEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCc
Q 043667 9 EQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRL 86 (387)
Q Consensus 9 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L 86 (387)
+.++.++.....+|..+ .++|++|+++++ .++.++. ++.+++|++|+++++ .+..+.... +..+++|
T Consensus 14 ~~~~c~~~~l~~ip~~~----~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~-----~~~l~~L 82 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI----PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSN-VLARIDAAA-----FTGLALL 82 (285)
T ss_dssp CEEECCSSCCSSCCTTC----CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTT-----TTTCTTC
T ss_pred eEEEcCcCCcccCCcCC----CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCC-ccceeCHhh-----cCCccCC
Confidence 56777777777787643 568999999985 6777774 888999999999988 666664433 3457899
Q ss_pred ceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCC---CCCCccEEEeccCcccc---ccccCCCCcce
Q 043667 87 ETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPE---HLPALEMLVIEACKELS---VSVSSLPALCK 160 (387)
Q Consensus 87 ~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~---~~~~L~~L~l~~~~~l~---~~~~~~~~L~~ 160 (387)
++|+++++..+..... ..+..+++|++|+++++. +.+..+. .+++|+.|+++++.... ..+..+++|++
T Consensus 83 ~~L~l~~n~~l~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 157 (285)
T 1ozn_A 83 EQLDLSDNAQLRSVDP----ATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157 (285)
T ss_dssp CEEECCSCTTCCCCCT----TTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEEeCCCCCCccccCH----HHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccE
Confidence 9999988765555544 455568889999998763 3323232 35677777777764221 23566677777
Q ss_pred EEEcCccceeEec-ccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEec
Q 043667 161 LKIGGCKKVVWRS-ATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTID 239 (387)
Q Consensus 161 L~i~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 239 (387)
|+++++....++. .+..+++|++|+++++.- ..........+++|++ +.++++. +..++...+..+++|+.|+++
T Consensus 158 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~--L~l~~n~-l~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRV-AHVHPHAFRDLGRLMT--LYLFANN-LSALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCE--EECCSSC-CSCCCHHHHTTCTTCCEEECC
T ss_pred EECCCCcccccCHHHhcCccccCEEECCCCcc-cccCHhHccCcccccE--eeCCCCc-CCcCCHHHcccCcccCEEecc
Confidence 7777665444332 345566677766665532 2221111334445555 5555432 333333334445555555555
Q ss_pred CCC
Q 043667 240 WCP 242 (387)
Q Consensus 240 ~~~ 242 (387)
+++
T Consensus 234 ~N~ 236 (285)
T 1ozn_A 234 DNP 236 (285)
T ss_dssp SSC
T ss_pred CCC
Confidence 543
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.63 E-value=7.6e-15 Score=132.20 Aligned_cols=52 Identities=13% Similarity=0.232 Sum_probs=29.3
Q ss_pred cEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccc
Q 043667 34 VTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDA 93 (387)
Q Consensus 34 ~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 93 (387)
+.++.++ ..++.+|. +-.++|++|++.++ .++.++...+ ..+++|++|++.+
T Consensus 10 ~~l~c~~-~~l~~ip~-~~~~~l~~L~L~~n-~l~~i~~~~~-----~~l~~L~~L~L~~ 61 (306)
T 2z66_A 10 TEIRCNS-KGLTSVPT-GIPSSATRLELESN-KLQSLPHGVF-----DKLTQLTKLSLSS 61 (306)
T ss_dssp TEEECCS-SCCSSCCS-CCCTTCCEEECCSS-CCCCCCTTTT-----TTCTTCSEEECCS
T ss_pred CEEEcCC-CCcccCCC-CCCCCCCEEECCCC-ccCccCHhHh-----hccccCCEEECCC
Confidence 4556655 35666665 22367778887777 5555554321 2355555555554
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=4.8e-15 Score=128.58 Aligned_cols=190 Identities=14% Similarity=0.175 Sum_probs=146.9
Q ss_pred CCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhh
Q 043667 179 GSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQ 258 (387)
Q Consensus 179 ~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 258 (387)
+++++|+++++. +..++......+++|++ +.+.++..++.++...++.+++|++|++++|..+..+++. .+..
T Consensus 31 ~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~--L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~----~f~~ 103 (239)
T 2xwt_C 31 PSTQTLKLIETH-LRTIPSHAFSNLPNISR--IYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD----ALKE 103 (239)
T ss_dssp TTCCEEEEESCC-CSEECTTTTTTCTTCCE--EEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT----SEEC
T ss_pred CcccEEEEeCCc-ceEECHHHccCCCCCcE--EeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH----HhCC
Confidence 467777776653 44444433567888888 9999887687888766888999999999986778777654 3555
Q ss_pred hhhccCCccEEEeccCCCCCCcccccCCCCCcc---EEEecCCCCceecCCCCcC--CCce-EEEeccCCCCCccccccc
Q 043667 259 LCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLR---EIDIYDCSSLVSFPEVALP--SKLK-KIEIRKCDALKSLPEAWM 332 (387)
Q Consensus 259 l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~---~L~l~~c~~l~~~~~~~~~--~~L~-~L~l~~c~~l~~l~~~~~ 332 (387)
+ ++|++|+++++. ++.+|. +..+++|+ .|+++++..++.++...+. ++|+ +|+++++ .++.++....
T Consensus 104 l----~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~ 176 (239)
T 2xwt_C 104 L----PLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAF 176 (239)
T ss_dssp C----TTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTT
T ss_pred C----CCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhc
Confidence 5 899999999864 777886 77888888 9999996689998876554 8999 9999985 4788887544
Q ss_pred cCCCCCcceEecccCcccccccCC--CCC-CCccEEeecCCccccccccccccccCC
Q 043667 333 CDTNSSLETLKIERCRSLTYIAGV--QLP-PSLKRLDIWNCDNIRTLTVEEGVQSSS 386 (387)
Q Consensus 333 ~~~~~~L~~L~l~~c~~l~~~~~~--~~~-~~L~~L~l~~C~~l~~l~~~~~~~~~~ 386 (387)
...+ |++|++++++.++.++.. ... ++|++|++++ ++++.+|.. +++.++
T Consensus 177 ~~~~--L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~ 229 (239)
T 2xwt_C 177 NGTK--LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLK 229 (239)
T ss_dssp TTCE--EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCS
T ss_pred CCCC--CCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCc
Confidence 4455 999999997669888765 445 8999999999 678999865 555543
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=7.1e-15 Score=140.95 Aligned_cols=139 Identities=9% Similarity=-0.002 Sum_probs=82.7
Q ss_pred CCCccEEEeecCCCCCCCC--CcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCC
Q 043667 30 FSNLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQ 107 (387)
Q Consensus 30 l~~L~~L~l~~c~~~~~l~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 107 (387)
+++|++|++++| .+..++ .++.+++|++|+++++ .+...+. +..+++|++|+++++ .+.....
T Consensus 33 ~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-------l~~l~~L~~L~Ls~N-~l~~l~~----- 97 (487)
T 3oja_A 33 AWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSN-VLYETLD-------LESLSTLRTLDLNNN-YVQELLV----- 97 (487)
T ss_dssp GGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-------CTTCTTCCEEECCSS-EEEEEEE-----
T ss_pred CCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-------cccCCCCCEEEecCC-cCCCCCC-----
Confidence 458999999886 666665 3888899999999988 4554432 245778888888764 3333332
Q ss_pred CccCCCCcceEeeccCcccccccCCCCCCccEEEeccCccc---cccccCCCCcceEEEcCcccee-Eecccc-cCCCCc
Q 043667 108 GVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKEL---SVSVSSLPALCKLKIGGCKKVV-WRSATD-HLGSQN 182 (387)
Q Consensus 108 ~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l---~~~~~~~~~L~~L~i~~~~~~~-~~~~~~-~~~~L~ 182 (387)
.++|+.|+++++ .+.+..+..+++|+.|+++++..- +..+..+++|+.|+++++.... .+..+. .+++|+
T Consensus 98 ----~~~L~~L~L~~N-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 98 ----GPSIETLHAANN-NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp ----CTTCCEEECCSS-CCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred ----CCCcCEEECcCC-cCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 477888888776 344344445666777766665421 1234455566666665554333 122221 344555
Q ss_pred EEeccC
Q 043667 183 SVVCRD 188 (387)
Q Consensus 183 ~L~l~~ 188 (387)
+|++++
T Consensus 173 ~L~Ls~ 178 (487)
T 3oja_A 173 HLNLQY 178 (487)
T ss_dssp EEECTT
T ss_pred EEecCC
Confidence 555544
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.60 E-value=1.4e-14 Score=131.10 Aligned_cols=240 Identities=13% Similarity=0.095 Sum_probs=161.8
Q ss_pred CCCCcceEeeccCcccccccC---CCCCCccEEEeccCcccc-ccccCCCCcceEEEcCccceeEecccccCCCCcEEec
Q 043667 111 GFPKLRELHILRCSKLQGTFP---EHLPALEMLVIEACKELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVC 186 (387)
Q Consensus 111 ~~~~L~~L~l~~~~~l~~~~~---~~~~~L~~L~l~~~~~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l 186 (387)
.+++|++|+++++ .+.+..| ..+++|+.|+++++.... ..+..+++|++|+++++....++ ..++|++|++
T Consensus 32 ~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l 106 (317)
T 3o53_A 32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL----VGPSIETLHA 106 (317)
T ss_dssp TGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE----ECTTCCEEEC
T ss_pred cCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc----CCCCcCEEEC
Confidence 3678999999987 4442332 357899999998876322 34788899999999987644433 3488999999
Q ss_pred cCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCc
Q 043667 187 RDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRL 266 (387)
Q Consensus 187 ~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L 266 (387)
+++.- ..++ +..+++|++ +.++++. +..++...++.+++|++|+++++ .+..++... ....+ ++|
T Consensus 107 ~~n~l-~~~~---~~~~~~L~~--L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~---~~~~l----~~L 171 (317)
T 3o53_A 107 ANNNI-SRVS---CSRGQGKKN--IYLANNK-ITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAE---LAASS----DTL 171 (317)
T ss_dssp CSSCC-SEEE---ECCCSSCEE--EECCSSC-CCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGG---GGGGT----TTC
T ss_pred CCCcc-CCcC---ccccCCCCE--EECCCCC-CCCccchhhhccCCCCEEECCCC-CCCcccHHH---Hhhcc----CcC
Confidence 87643 3332 234567777 8887764 44444444667888999999885 444443321 11233 888
Q ss_pred cEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCc-CCCceEEEeccCCCCCccccccccCCCCCcceEecc
Q 043667 267 EYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVAL-PSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIE 345 (387)
Q Consensus 267 ~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~ 345 (387)
++|++++|. ++.++. ...+++|+.|++++ +.++.++.... .++|++|+++++ .++.+|..+...++ |++|+++
T Consensus 172 ~~L~L~~N~-l~~~~~-~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~--L~~L~l~ 245 (317)
T 3o53_A 172 EHLNLQYNF-IYDVKG-QVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQN--LEHFDLR 245 (317)
T ss_dssp CEEECTTSC-CCEEEC-CCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTT--CCEEECT
T ss_pred CEEECCCCc-Cccccc-ccccccCCEEECCC-CcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCC--CCEEEcc
Confidence 999998854 666654 33578899999988 47777765422 288999999885 57788877666666 9999998
Q ss_pred cCcccc--cccCC-CCCCCccEEeecCCccccccc
Q 043667 346 RCRSLT--YIAGV-QLPPSLKRLDIWNCDNIRTLT 377 (387)
Q Consensus 346 ~c~~l~--~~~~~-~~~~~L~~L~l~~C~~l~~l~ 377 (387)
++ .++ .++.. ...++|+++++.+++.++...
T Consensus 246 ~N-~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 246 GN-GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp TC-CCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred CC-CccCcCHHHHHhccccceEEECCCchhccCCc
Confidence 85 444 33322 455778888888666665544
No 72
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=2.1e-14 Score=131.86 Aligned_cols=228 Identities=18% Similarity=0.170 Sum_probs=153.0
Q ss_pred ccccccCCCC-CCccEEEeccCcc--cc-ccccCCCCcceEEEcCcccee-Ee-cccccCCCCcEEeccCCCCcccccCC
Q 043667 125 KLQGTFPEHL-PALEMLVIEACKE--LS-VSVSSLPALCKLKIGGCKKVV-WR-SATDHLGSQNSVVCRDTSNQVFLAGP 198 (387)
Q Consensus 125 ~l~~~~~~~~-~~L~~L~l~~~~~--l~-~~~~~~~~L~~L~i~~~~~~~-~~-~~~~~~~~L~~L~l~~~~~l~~~~~~ 198 (387)
+++ .+|..+ +++++|+++++.. ++ ..+.++++|++|+++++...+ ++ ..+..++++.++.+.++..+..++..
T Consensus 20 ~Lt-~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 20 KVT-EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp TCC-SCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCC-ccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence 444 566654 4788999888652 32 357788889999998876544 22 23456677777666666666666655
Q ss_pred CCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCC
Q 043667 199 LKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLV 278 (387)
Q Consensus 199 ~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~ 278 (387)
....+++|++ +.+.++. +..++...+....++..+++.++..+..++... +..+ ...++.|++++ +.++
T Consensus 99 ~f~~l~~L~~--L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~----f~~~---~~~l~~L~L~~-N~i~ 167 (350)
T 4ay9_X 99 AFQNLPNLQY--LLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS----FVGL---SFESVILWLNK-NGIQ 167 (350)
T ss_dssp SBCCCTTCCE--EEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS----STTS---BSSCEEEECCS-SCCC
T ss_pred hhhhcccccc--ccccccc-cccCCchhhcccchhhhhhhccccccccccccc----hhhc---chhhhhhcccc-cccc
Confidence 4667777777 7776543 344444333445667778887777777665532 2222 14677788876 4577
Q ss_pred CcccccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCC
Q 043667 279 KLPQSSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGV 356 (387)
Q Consensus 279 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 356 (387)
.++.......+|+++++.+++.++.++...+. ++|++|+++++ .++.+|... +.+ |++|.+.++++++.+|.-
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~--~~~--L~~L~~l~~~~l~~lP~l 242 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYG--LEN--LKKLRARSTYNLKKLPTL 242 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSS--CTT--CCEEECTTCTTCCCCCCT
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhh--hcc--chHhhhccCCCcCcCCCc
Confidence 77776666677888888877788888776554 78888888874 577777542 556 888888888888888765
Q ss_pred CCCCCccEEeecC
Q 043667 357 QLPPSLKRLDIWN 369 (387)
Q Consensus 357 ~~~~~L~~L~l~~ 369 (387)
..+++|+.+++.+
T Consensus 243 ~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 243 EKLVALMEASLTY 255 (350)
T ss_dssp TTCCSCCEEECSC
T ss_pred hhCcChhhCcCCC
Confidence 6677888887753
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=5.3e-14 Score=134.85 Aligned_cols=230 Identities=13% Similarity=0.092 Sum_probs=132.5
Q ss_pred CCCCcceEeeccCcccccccC---CCCCCccEEEeccCcccc-ccccCCCCcceEEEcCccceeEecccccCCCCcEEec
Q 043667 111 GFPKLRELHILRCSKLQGTFP---EHLPALEMLVIEACKELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVC 186 (387)
Q Consensus 111 ~~~~L~~L~l~~~~~l~~~~~---~~~~~L~~L~l~~~~~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l 186 (387)
.+++|+.|+++++ .+.+..| ..+++|+.|+++++.... ..+..+++|++|+++++....++ ..++|++|++
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~----~~~~L~~L~L 106 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL----VGPSIETLHA 106 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEE----ECTTCCEEEC
T ss_pred cCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCC----CCCCcCEEEC
Confidence 3568899999887 4443333 246788888888776321 33777888888888877544333 2378888888
Q ss_pred cCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHH-hhhhhccCC
Q 043667 187 RDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQ-QQLCELSCR 265 (387)
Q Consensus 187 ~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~l~~~~~~ 265 (387)
+++.- ..++ +..+++|+. |.+.++. +..++...++.+++|+.|+++++ .+..+++. .+ ..+ ++
T Consensus 107 ~~N~l-~~~~---~~~l~~L~~--L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~----~l~~~l----~~ 170 (487)
T 3oja_A 107 ANNNI-SRVS---CSRGQGKKN--IYLANNK-ITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFA----ELAASS----DT 170 (487)
T ss_dssp CSSCC-CCEE---ECCCSSCEE--EECCSSC-CCSGGGBCGGGGSSEEEEECTTS-CCCEEEGG----GGGGGT----TT
T ss_pred cCCcC-CCCC---ccccCCCCE--EECCCCC-CCCCCchhhcCCCCCCEEECCCC-CCCCcChH----HHhhhC----Cc
Confidence 77532 2222 223456666 6666654 33333333556777777777764 33332222 12 133 67
Q ss_pred ccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCC-cCCCceEEEeccCCCCCccccccccCCCCCcceEec
Q 043667 266 LEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVA-LPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKI 344 (387)
Q Consensus 266 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l 344 (387)
|++|++++|. ++.++. ...+++|+.|++++ +.++.++... -.++|+.|+++++ .+..+|..+..+++ |+.|++
T Consensus 171 L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~--L~~L~l 244 (487)
T 3oja_A 171 LEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQN--LEHFDL 244 (487)
T ss_dssp CCEEECTTSC-CCEEEC-CCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTT--CCEEEC
T ss_pred ccEEecCCCc-cccccc-cccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCC--CCEEEc
Confidence 7777777643 555543 33467777777776 4566655431 1267777777764 36666666555555 777777
Q ss_pred ccCcccc--cccCC-CCCCCccEEeec
Q 043667 345 ERCRSLT--YIAGV-QLPPSLKRLDIW 368 (387)
Q Consensus 345 ~~c~~l~--~~~~~-~~~~~L~~L~l~ 368 (387)
+++ .+. .++.. ...+.|+.+++.
T Consensus 245 ~~N-~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 245 RGN-GFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTC-CBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCC-CCcCcchHHHHHhCCCCcEEecc
Confidence 775 333 22222 334455555553
No 74
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.58 E-value=6.9e-16 Score=140.92 Aligned_cols=170 Identities=14% Similarity=0.209 Sum_probs=97.4
Q ss_pred CCCCcEEEEcCcCCCCCCCccCCccC--CCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceE--eCccccCCCcc
Q 043667 5 HKNLEQFCISGYRGAKFPTWFGDSSF--SNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKR--LGSEFYGKGAA 80 (387)
Q Consensus 5 ~~~L~~L~l~~~~~~~~p~~~~~~~l--~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~ 80 (387)
+..++.++++++... |..+.. + ++++.|++.++..-...+.+..+++|++|+++++. +.. ++.. .
T Consensus 46 ~~~~~~l~l~~~~~~--~~~~~~--~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~------~ 114 (336)
T 2ast_B 46 ESLWQTLDLTGKNLH--PDVTGR--LLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGI------L 114 (336)
T ss_dssp STTSSEEECTTCBCC--HHHHHH--HHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHH------H
T ss_pred chhheeeccccccCC--HHHHHh--hhhccceEEEcCCccccccchhhccCCCCCEEEccCCC-cCHHHHHHH------H
Confidence 345777777765443 333333 4 77888888775333344456778888888888873 322 1111 2
Q ss_pred cCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccc-cC---CCCCCccEEEeccCcccc-----cc
Q 043667 81 IPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGT-FP---EHLPALEMLVIEACKELS-----VS 151 (387)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~-~~---~~~~~L~~L~l~~~~~l~-----~~ 151 (387)
..+++|++|++.++. +.+... ..+..+++|++|++++|..+++. ++ ..+++|+.|++++|..+. ..
T Consensus 115 ~~~~~L~~L~L~~~~-l~~~~~----~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 189 (336)
T 2ast_B 115 SQCSKLQNLSLEGLR-LSDPIV----NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189 (336)
T ss_dssp TTBCCCSEEECTTCB-CCHHHH----HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred hhCCCCCEEeCcCcc-cCHHHH----HHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence 456778888887763 332222 23335777788887777544421 22 236677777777763322 23
Q ss_pred ccCCC-CcceEEEcCcc-cee---EecccccCCCCcEEeccCCC
Q 043667 152 VSSLP-ALCKLKIGGCK-KVV---WRSATDHLGSQNSVVCRDTS 190 (387)
Q Consensus 152 ~~~~~-~L~~L~i~~~~-~~~---~~~~~~~~~~L~~L~l~~~~ 190 (387)
+..++ +|++|+++++. .++ ++..+..+++|++|++++|.
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 45566 77777776664 222 23334456666666666654
No 75
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=8.2e-14 Score=127.90 Aligned_cols=215 Identities=20% Similarity=0.186 Sum_probs=160.0
Q ss_pred CCCcceEeeccCcccccccCC----CCCCccEEEeccCcccc----ccccCCCCcceEEEcCcccee-E-ecccccCCCC
Q 043667 112 FPKLRELHILRCSKLQGTFPE----HLPALEMLVIEACKELS----VSVSSLPALCKLKIGGCKKVV-W-RSATDHLGSQ 181 (387)
Q Consensus 112 ~~~L~~L~l~~~~~l~~~~~~----~~~~L~~L~l~~~~~l~----~~~~~~~~L~~L~i~~~~~~~-~-~~~~~~~~~L 181 (387)
.+++++|+++++ .++ .+|. .+++|+.|+++++.... ..+.++++++++.+.++..+. + +..+..+++|
T Consensus 29 ~~~l~~L~Ls~N-~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L 106 (350)
T 4ay9_X 29 PRNAIELRFVLT-KLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106 (350)
T ss_dssp CTTCSEEEEESC-CCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred CCCCCEEEccCC-cCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence 468999999986 455 4543 47899999999986432 356788888887666554444 3 3556788999
Q ss_pred cEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccC-CCccEEEecCCCCcccchhhHHHHHHhhhh
Q 043667 182 NSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDI-CSLKKLTIDWCPKLQSLVAEEEKDQQQQLC 260 (387)
Q Consensus 182 ~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~ 260 (387)
++|+++++. +..++........++.. +.+.++..+..++...+..+ ..++.|++++ +.++.++... +. .
T Consensus 107 ~~L~l~~n~-l~~~~~~~~~~~~~l~~--l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~----f~-~- 176 (350)
T 4ay9_X 107 QYLLISNTG-IKHLPDVHKIHSLQKVL--LDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSA----FN-G- 176 (350)
T ss_dssp CEEEEEEEC-CSSCCCCTTCCBSSCEE--EEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTS----ST-T-
T ss_pred ccccccccc-cccCCchhhcccchhhh--hhhccccccccccccchhhcchhhhhhcccc-ccccCCChhh----cc-c-
Confidence 999998764 34444332334445555 88888888888777655554 4689999998 4677776542 21 1
Q ss_pred hccCCccEEEeccCCCCCCcccc-cCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccCCCCCc
Q 043667 261 ELSCRLEYLRLRYCKGLVKLPQS-SLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSL 339 (387)
Q Consensus 261 ~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L 339 (387)
.+|++|.+.+++.++.+|.. +..+++|+.|++++ +.++.+|..++ .+|+.|.+.++.+++.+|. +..+++ |
T Consensus 177 ---~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~-N~l~~lp~~~~-~~L~~L~~l~~~~l~~lP~-l~~l~~--L 248 (350)
T 4ay9_X 177 ---TQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPSYGL-ENLKKLRARSTYNLKKLPT-LEKLVA--L 248 (350)
T ss_dssp ---EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT-SCCCCCCSSSC-TTCCEEECTTCTTCCCCCC-TTTCCS--C
T ss_pred ---cchhHHhhccCCcccCCCHHHhccCcccchhhcCC-CCcCccChhhh-ccchHhhhccCCCcCcCCC-chhCcC--h
Confidence 68999999988889999864 68899999999998 58999987665 7899999999999999985 555777 9
Q ss_pred ceEeccc
Q 043667 340 ETLKIER 346 (387)
Q Consensus 340 ~~L~l~~ 346 (387)
+.+++.+
T Consensus 249 ~~l~l~~ 255 (350)
T 4ay9_X 249 MEASLTY 255 (350)
T ss_dssp CEEECSC
T ss_pred hhCcCCC
Confidence 9999876
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.53 E-value=1.4e-13 Score=121.94 Aligned_cols=199 Identities=20% Similarity=0.209 Sum_probs=103.0
Q ss_pred ccCCCC-CCccEEEeccCcccc---ccccCCCCcceEEEcCccceeEec-ccccCCCCcEEeccCCCCcccccCCCCCCC
Q 043667 129 TFPEHL-PALEMLVIEACKELS---VSVSSLPALCKLKIGGCKKVVWRS-ATDHLGSQNSVVCRDTSNQVFLAGPLKPQL 203 (387)
Q Consensus 129 ~~~~~~-~~L~~L~l~~~~~l~---~~~~~~~~L~~L~i~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l 203 (387)
.+|..+ ++|+.|+++++..-. ..+..+++|++|+++++....+.. .+..+++|++|+++++. +..++......+
T Consensus 21 ~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 99 (276)
T 2z62_A 21 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGL 99 (276)
T ss_dssp SCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTC
T ss_pred ccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCC
Confidence 455544 368888888775322 256777888888888775444432 45667777887777653 222222224455
Q ss_pred ccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCccc--chhhHHHHHHhhhhhccCCccEEEeccCCCCCCcc
Q 043667 204 PKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQS--LVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLP 281 (387)
Q Consensus 204 ~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~ 281 (387)
++|++ +.+.++. +..++...++.+++|++|+++++ .+.. ++. .+..+ ++|++|+++++. ++.++
T Consensus 100 ~~L~~--L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~-----~~~~l----~~L~~L~Ls~N~-l~~~~ 165 (276)
T 2z62_A 100 SSLQK--LVAVETN-LASLENFPIGHLKTLKELNVAHN-LIQSFKLPE-----YFSNL----TNLEHLDLSSNK-IQSIY 165 (276)
T ss_dssp TTCCE--EECTTSC-CCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCG-----GGGGC----TTCCEEECCSSC-CCEEC
T ss_pred ccccE--EECCCCC-ccccCchhcccCCCCCEEECcCC-ccceecCch-----hhccC----CCCCEEECCCCC-CCcCC
Confidence 55555 5555443 22233322445566666666653 2222 121 23333 566666666542 44333
Q ss_pred c-ccCCCCCcc----EEEecCCCCceecCCCCcC-CCceEEEeccCCCCCccccc-cccCCCCCcceEeccc
Q 043667 282 Q-SSLSLSSLR----EIDIYDCSSLVSFPEVALP-SKLKKIEIRKCDALKSLPEA-WMCDTNSSLETLKIER 346 (387)
Q Consensus 282 ~-~~~~~~~L~----~L~l~~c~~l~~~~~~~~~-~~L~~L~l~~c~~l~~l~~~-~~~~~~~~L~~L~l~~ 346 (387)
. .+..+++|+ .|++++ +.++.++...+. .+|++|+++++. ++.++.. +..+++ |++|++++
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~--L~~L~l~~ 233 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTS--LQKIWLHT 233 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCS--CCEEECCS
T ss_pred HHHhhhhhhccccceeeecCC-CcccccCccccCCCcccEEECCCCc-eeecCHhHhccccc--ccEEEccC
Confidence 2 232233333 555555 345555443333 456666665533 5555432 233444 66666654
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.52 E-value=9.9e-13 Score=116.12 Aligned_cols=198 Identities=19% Similarity=0.176 Sum_probs=107.6
Q ss_pred CCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCC
Q 043667 6 KNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPF 83 (387)
Q Consensus 6 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 83 (387)
.+.+.++.++.....+|..+. +++++|+++++ .++.++. ++.+++|++|++.++ .+..++... +..+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~----~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~-----~~~l 84 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP----ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGI-----FKEL 84 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC----TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTT-----TSSC
T ss_pred CCCCEEEccCCCCCccCCCCC----CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhh-----hcCC
Confidence 356788888888888876543 47888888885 5666664 778888888888887 555555443 2346
Q ss_pred CCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCCCccEEEeccCccccccccCCCCcceEEE
Q 043667 84 PRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKI 163 (387)
Q Consensus 84 ~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~i 163 (387)
++|++|++.++. +..... ..+..+++|++|+++++ .+....+ ..+..+++|++|++
T Consensus 85 ~~L~~L~l~~n~-l~~~~~----~~~~~l~~L~~L~l~~n-~l~~~~~------------------~~~~~l~~L~~L~L 140 (270)
T 2o6q_A 85 KNLETLWVTDNK-LQALPI----GVFDQLVNLAELRLDRN-QLKSLPP------------------RVFDSLTKLTYLSL 140 (270)
T ss_dssp TTCCEEECCSSC-CCCCCT----TTTTTCSSCCEEECCSS-CCCCCCT------------------TTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCc-CCcCCH----hHcccccCCCEEECCCC-ccCeeCH------------------HHhCcCcCCCEEEC
Confidence 677777776532 222222 22234566666666654 2221111 12344455555555
Q ss_pred cCccceeEec-ccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCC
Q 043667 164 GGCKKVVWRS-ATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCP 242 (387)
Q Consensus 164 ~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 242 (387)
+++....++. .+..+++|++|+++++. +..++......+++|++ +.++++ .++.++...+..+++|+.|++++++
T Consensus 141 s~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~--L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 141 GYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKT--LKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCE--EECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCE--EECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 5543322221 23445555555555442 22222222334445555 555544 3344444445556666666666643
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.51 E-value=7.8e-15 Score=133.90 Aligned_cols=248 Identities=13% Similarity=0.079 Sum_probs=163.7
Q ss_pred CCcceEeeccCcccccccCCCC--CCccEEEeccCcc--ccccccCCCCcceEEEcCcccee--EecccccCCCCcEEec
Q 043667 113 PKLRELHILRCSKLQGTFPEHL--PALEMLVIEACKE--LSVSVSSLPALCKLKIGGCKKVV--WRSATDHLGSQNSVVC 186 (387)
Q Consensus 113 ~~L~~L~l~~~~~l~~~~~~~~--~~L~~L~l~~~~~--l~~~~~~~~~L~~L~i~~~~~~~--~~~~~~~~~~L~~L~l 186 (387)
..+++++++++.. .......+ ++++.+++.++.. ....+..+++|++|+++++.... ++..+..+++|++|++
T Consensus 47 ~~~~~l~l~~~~~-~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 47 SLWQTLDLTGKNL-HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TTSSEEECTTCBC-CHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hhheeeccccccC-CHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 3478888887532 21222223 7899999987652 22345678999999999886322 4455678899999999
Q ss_pred cCCCCcccccCCCCCCCccccceeEEEcCCCCccc--ccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccC
Q 043667 187 RDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWK--SHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSC 264 (387)
Q Consensus 187 ~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~ 264 (387)
++|.-....+.. ...+++|++ +.+.+|..++. ++. .++.+++|++|++++|..+.... ....+..+ +
T Consensus 126 ~~~~l~~~~~~~-l~~~~~L~~--L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~l----~ 194 (336)
T 2ast_B 126 EGLRLSDPIVNT-LAKNSNLVR--LNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTEKH---VQVAVAHV----S 194 (336)
T ss_dssp TTCBCCHHHHHH-HTTCTTCSE--EECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCHHH---HHHHHHHS----C
T ss_pred cCcccCHHHHHH-HhcCCCCCE--EECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcChHH---HHHHHHhc----c
Confidence 998532222222 345788888 99999866653 333 35679999999999986666421 11134555 8
Q ss_pred -CccEEEeccCC-CCC--CcccccCCCCCccEEEecCCCCceecCCCC--cCCCceEEEeccCCCCCcc-ccccccCCCC
Q 043667 265 -RLEYLRLRYCK-GLV--KLPQSSLSLSSLREIDIYDCSSLVSFPEVA--LPSKLKKIEIRKCDALKSL-PEAWMCDTNS 337 (387)
Q Consensus 265 -~L~~L~l~~c~-~l~--~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~c~~l~~l-~~~~~~~~~~ 337 (387)
+|++|++++|. .++ .++..+..+++|+.|++++|..++...... ..++|++|++++|..+..- ...+..+++
T Consensus 195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~- 273 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT- 273 (336)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT-
T ss_pred cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC-
Confidence 99999999985 453 355566789999999999987565422222 2289999999998744332 123455666
Q ss_pred CcceEecccCcccccccCCCCCCCccEEeecCCccccccc
Q 043667 338 SLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTLT 377 (387)
Q Consensus 338 ~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~ 377 (387)
|++|++++| +++-.......++..|+++ |++++.+.
T Consensus 274 -L~~L~l~~~--i~~~~~~~l~~~l~~L~l~-~n~l~~~~ 309 (336)
T 2ast_B 274 -LKTLQVFGI--VPDGTLQLLKEALPHLQIN-CSHFTTIA 309 (336)
T ss_dssp -CCEEECTTS--SCTTCHHHHHHHSTTSEES-CCCSCCTT
T ss_pred -CCEEeccCc--cCHHHHHHHHhhCcceEEe-cccCcccc
Confidence 999999998 3321111222346777786 46666654
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.50 E-value=9.8e-13 Score=116.15 Aligned_cols=194 Identities=23% Similarity=0.309 Sum_probs=100.3
Q ss_pred CccEEEeccCccccccccCCCCcceEEEcCccceeEe-cccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEc
Q 043667 136 ALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWR-SATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTK 214 (387)
Q Consensus 136 ~L~~L~l~~~~~l~~~~~~~~~L~~L~i~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~ 214 (387)
..+.++.++...........+++++|+++++....++ ..+..+++|++|+++++. +..++......+++|++ +.++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~--L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLET--LWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCE--EECC
T ss_pred CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCE--EECC
Confidence 3455555543321111112246777777766543333 245556777777776542 33333332345566666 6665
Q ss_pred CCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccc-cCCCCCccEE
Q 043667 215 EQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS-SLSLSSLREI 293 (387)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L 293 (387)
++. +..++...+..+++|++|+++++ .+..+++. .+..+ ++|++|+++++ .++.++.. +..+++|+.|
T Consensus 94 ~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~----~~~~l----~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 94 DNK-LQALPIGVFDQLVNLAELRLDRN-QLKSLPPR----VFDSL----TKLTYLSLGYN-ELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp SSC-CCCCCTTTTTTCSSCCEEECCSS-CCCCCCTT----TTTTC----TTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCc-CCcCCHhHcccccCCCEEECCCC-ccCeeCHH----HhCcC----cCCCEEECCCC-cCCccCHhHccCCccccee
Confidence 543 44444444555666666666653 33443332 23333 66666666664 35555543 4556666666
Q ss_pred EecCCCCceecCCCCcC--CCceEEEeccCCCCCccccc-cccCCCCCcceEecccC
Q 043667 294 DIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPEA-WMCDTNSSLETLKIERC 347 (387)
Q Consensus 294 ~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~-~~~~~~~~L~~L~l~~c 347 (387)
++++ +.++.++...+. ++|++|+++++ .++.++.. +..+++ |++|+++++
T Consensus 163 ~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~--L~~L~l~~N 215 (270)
T 2o6q_A 163 RLYN-NQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEK--LKMLQLQEN 215 (270)
T ss_dssp ECCS-SCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTT--CCEEECCSS
T ss_pred EecC-CcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccC--CCEEEecCC
Confidence 6665 355555544333 56666666654 35555432 333444 666666653
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.50 E-value=3.1e-13 Score=121.71 Aligned_cols=194 Identities=14% Similarity=0.182 Sum_probs=122.9
Q ss_pred CCCCccEEEeccCcccc-ccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeE
Q 043667 133 HLPALEMLVIEACKELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELIL 211 (387)
Q Consensus 133 ~~~~L~~L~l~~~~~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L 211 (387)
.+++|+.|++.++.... ..+..+++|++|+++++....+.. +..+++|++|+++++. +..++. ...+++|++ |
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~--L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSA--IAGLQSIKT--L 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGG--GTTCTTCCE--E
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchh--hcCCCCCCE--E
Confidence 36788899988875322 356778889999988875544444 6777888888888764 333321 345666666 7
Q ss_pred EEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCcc
Q 043667 212 STKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLR 291 (387)
Q Consensus 212 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~ 291 (387)
.++++. ++.++. +..+++|++|+++++ .+..++. +..+ ++|++|++++| .++.++. +..+++|+
T Consensus 113 ~l~~n~-l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~------l~~l----~~L~~L~l~~n-~l~~~~~-l~~l~~L~ 176 (308)
T 1h6u_A 113 DLTSTQ-ITDVTP--LAGLSNLQVLYLDLN-QITNISP------LAGL----TNLQYLSIGNA-QVSDLTP-LANLSKLT 176 (308)
T ss_dssp ECTTSC-CCCCGG--GTTCTTCCEEECCSS-CCCCCGG------GGGC----TTCCEEECCSS-CCCCCGG-GTTCTTCC
T ss_pred ECCCCC-CCCchh--hcCCCCCCEEECCCC-ccCcCcc------ccCC----CCccEEEccCC-cCCCChh-hcCCCCCC
Confidence 776654 333432 556777777777774 3444432 3333 77777777775 4566655 66777777
Q ss_pred EEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcceEecccCccccccc
Q 043667 292 EIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIA 354 (387)
Q Consensus 292 ~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~ 354 (387)
.|++++ +.++.++.....++|++|++++|. +..++. +..+++ |+.|+++++ .++..+
T Consensus 177 ~L~l~~-n~l~~~~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~--L~~L~l~~N-~i~~~~ 233 (308)
T 1h6u_A 177 TLKADD-NKISDISPLASLPNLIEVHLKNNQ-ISDVSP-LANTSN--LFIVTLTNQ-TITNQP 233 (308)
T ss_dssp EEECCS-SCCCCCGGGGGCTTCCEEECTTSC-CCBCGG-GTTCTT--CCEEEEEEE-EEECCC
T ss_pred EEECCC-CccCcChhhcCCCCCCEEEccCCc-cCcccc-ccCCCC--CCEEEccCC-eeecCC
Confidence 777776 356655543333677777777653 566553 444555 777777774 455443
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.50 E-value=2.3e-13 Score=120.37 Aligned_cols=80 Identities=13% Similarity=0.195 Sum_probs=41.8
Q ss_pred CCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCc
Q 043667 30 FSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGV 109 (387)
Q Consensus 30 l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i 109 (387)
+++|+.|++.++ .++.++.++.+++|++|++.++ .+..++ . +..+++|++|++.++ .+..... ..+
T Consensus 40 l~~L~~L~l~~~-~i~~~~~l~~l~~L~~L~l~~n-~l~~~~-~------l~~l~~L~~L~L~~n-~l~~~~~----~~~ 105 (272)
T 3rfs_A 40 LNSIDQIIANNS-DIKSVQGIQYLPNVRYLALGGN-KLHDIS-A------LKELTNLTYLILTGN-QLQSLPN----GVF 105 (272)
T ss_dssp HTTCCEEECTTS-CCCCCTTGGGCTTCCEEECTTS-CCCCCG-G------GTTCTTCCEEECTTS-CCCCCCT----TTT
T ss_pred ccceeeeeeCCC-CcccccccccCCCCcEEECCCC-CCCCch-h------hcCCCCCCEEECCCC-ccCccCh----hHh
Confidence 666777777664 5566666666777777777666 333332 1 234555555555543 2222221 222
Q ss_pred cCCCCcceEeeccC
Q 043667 110 EGFPKLRELHILRC 123 (387)
Q Consensus 110 ~~~~~L~~L~l~~~ 123 (387)
..+++|++|+++++
T Consensus 106 ~~l~~L~~L~L~~n 119 (272)
T 3rfs_A 106 DKLTNLKELVLVEN 119 (272)
T ss_dssp TTCTTCCEEECTTS
T ss_pred cCCcCCCEEECCCC
Confidence 33455555555544
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.48 E-value=6e-15 Score=133.29 Aligned_cols=157 Identities=12% Similarity=0.059 Sum_probs=102.1
Q ss_pred CCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCccc--cccc-ccccCCCccEEEecCCCCcccchhhHHHHH
Q 043667 179 GSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWK--SHDG-LLQDICSLKKLTIDWCPKLQSLVAEEEKDQ 255 (387)
Q Consensus 179 ~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~--~~~~-~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 255 (387)
++|++|+++++.- ..++......+++|++ +.++++..... ++.. .++.+++|++|+++++ .+..++.. ....
T Consensus 149 ~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~--L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~ 223 (312)
T 1wwl_A 149 PGLKVLSIAQAHS-LNFSCEQVRVFPALST--LDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGV-CSAL 223 (312)
T ss_dssp TTCCEEEEESCSC-CCCCTTTCCCCSSCCE--EECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHH-HHHH
T ss_pred CCCcEEEeeCCCC-ccchHHHhccCCCCCE--EECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHH-HHHH
Confidence 5666666665432 2222222445666666 66666653322 1222 1367899999999986 45533221 0112
Q ss_pred HhhhhhccCCccEEEeccCCCCCCcc--cccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCcccccccc
Q 043667 256 QQQLCELSCRLEYLRLRYCKGLVKLP--QSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMC 333 (387)
Q Consensus 256 ~~~l~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 333 (387)
+..+ ++|++|+++++. ++..+ ..+..+++|+.|++++ +.++.++.... ++|++|+++++ .++.+|. +..
T Consensus 224 ~~~l----~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~-~~L~~L~Ls~N-~l~~~p~-~~~ 294 (312)
T 1wwl_A 224 AAAR----VQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSF-TGLKQVPKGLP-AKLSVLDLSYN-RLDRNPS-PDE 294 (312)
T ss_dssp HHTT----CCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTT-SCCSSCCSSCC-SEEEEEECCSS-CCCSCCC-TTT
T ss_pred HhcC----CCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCC-CccChhhhhcc-CCceEEECCCC-CCCCChh-Hhh
Confidence 3344 899999999864 65543 3455689999999998 57888876544 89999999985 5888876 666
Q ss_pred CCCCCcceEecccCccccc
Q 043667 334 DTNSSLETLKIERCRSLTY 352 (387)
Q Consensus 334 ~~~~~L~~L~l~~c~~l~~ 352 (387)
+++ |++|++++. .+++
T Consensus 295 l~~--L~~L~L~~N-~l~~ 310 (312)
T 1wwl_A 295 LPQ--VGNLSLKGN-PFLD 310 (312)
T ss_dssp SCE--EEEEECTTC-TTTC
T ss_pred CCC--CCEEeccCC-CCCC
Confidence 777 999999994 5543
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.48 E-value=3e-13 Score=122.10 Aligned_cols=152 Identities=18% Similarity=0.184 Sum_probs=109.7
Q ss_pred ccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHH--hhhhhccCCccEEEeccCCCCCCcc
Q 043667 204 PKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQ--QQLCELSCRLEYLRLRYCKGLVKLP 281 (387)
Q Consensus 204 ~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~--~~l~~~~~~L~~L~l~~c~~l~~~~ 281 (387)
++|++ +.++++. +..++...++.+++|++|+++++...+.++. ...+ ..+ ++|++|+++++. ++.++
T Consensus 149 ~~L~~--L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~~~~~l----~~L~~L~L~~N~-l~~~~ 217 (312)
T 1wwl_A 149 PGLKV--LSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGL---ISALCPLKF----PTLQVLALRNAG-METPS 217 (312)
T ss_dssp TTCCE--EEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHH---HHHSCTTSC----TTCCEEECTTSC-CCCHH
T ss_pred CCCcE--EEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHH---HHHHHhccC----CCCCEEECCCCc-CcchH
Confidence 67777 8888765 5556655578899999999999764443211 0012 444 999999999864 66443
Q ss_pred c---c-cCCCCCccEEEecCCCCceecC-CC--CcCCCceEEEeccCCCCCccccccccCCCCCcceEecccCccccccc
Q 043667 282 Q---S-SLSLSSLREIDIYDCSSLVSFP-EV--ALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIA 354 (387)
Q Consensus 282 ~---~-~~~~~~L~~L~l~~c~~l~~~~-~~--~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~ 354 (387)
. . +..+++|+.|++++ +.++..+ .. ...++|++|+++++. ++.+|..+. .+ |++|+++++ +++.+|
T Consensus 218 ~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~--L~~L~Ls~N-~l~~~p 290 (312)
T 1wwl_A 218 GVCSALAAARVQLQGLDLSH-NSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AK--LSVLDLSYN-RLDRNP 290 (312)
T ss_dssp HHHHHHHHTTCCCSEEECTT-SCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SE--EEEEECCSS-CCCSCC
T ss_pred HHHHHHHhcCCCCCEEECCC-CcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhcc--CC--ceEEECCCC-CCCCCh
Confidence 2 2 34779999999998 4666644 22 223899999999854 889988754 55 999999995 888886
Q ss_pred CCCCCCCccEEeecCCcccc
Q 043667 355 GVQLPPSLKRLDIWNCDNIR 374 (387)
Q Consensus 355 ~~~~~~~L~~L~l~~C~~l~ 374 (387)
....+++|++|++++. .++
T Consensus 291 ~~~~l~~L~~L~L~~N-~l~ 309 (312)
T 1wwl_A 291 SPDELPQVGNLSLKGN-PFL 309 (312)
T ss_dssp CTTTSCEEEEEECTTC-TTT
T ss_pred hHhhCCCCCEEeccCC-CCC
Confidence 5566799999999984 444
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.48 E-value=1.1e-12 Score=116.95 Aligned_cols=67 Identities=24% Similarity=0.187 Sum_probs=35.2
Q ss_pred cccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecC
Q 043667 221 KSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYD 297 (387)
Q Consensus 221 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~ 297 (387)
.++...+..+++|++|+++++ .+..++.. .+..+ ++|++|+++++ .++.+|..+...++|+.+++.+
T Consensus 138 ~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~----~~~~l----~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 138 TLPPGLLTPTPKLEKLSLANN-NLTELPAG----LLNGL----ENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp CCCTTTTTTCTTCCEEECTTS-CCSCCCTT----TTTTC----TTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCS
T ss_pred ccChhhcccccCCCEEECCCC-cCCccCHH----HhcCc----CCCCEEECCCC-cCCccChhhcccccCCeEEeCC
Confidence 334443445566666666653 34444432 23333 56666666553 3555665555555666666655
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.47 E-value=1.1e-12 Score=116.12 Aligned_cols=209 Identities=18% Similarity=0.144 Sum_probs=133.6
Q ss_pred cCcCCCCCCCccCCccCCCccEEEeecCCCCCCCC--CcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeec
Q 043667 14 SGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRF 91 (387)
Q Consensus 14 ~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l 91 (387)
.+.....+|..+. ++|++|+++++ .++.++ .++++++|++|+++++ .+..++... +..+++|++|++
T Consensus 15 ~~~~l~~ip~~l~----~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~-----~~~l~~L~~L~L 83 (276)
T 2z62_A 15 MELNFYKIPDNLP----FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGA-----YQSLSHLSTLIL 83 (276)
T ss_dssp TTSCCSSCCSSSC----TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTC-CCCEECTTT-----TTTCTTCCEEEC
T ss_pred cCCCccccCCCCC----CCccEEECCCC-cccccCHhHhccccCCcEEECCCC-cCCccCHHH-----ccCCcCCCEEEC
Confidence 3444555665432 46888888775 566665 3777888888888887 566665433 245778888888
Q ss_pred cccCCccccccCcCCCCccCCCCcceEeeccCccccccc---CCCCCCccEEEeccCcc----ccccccCCCCcceEEEc
Q 043667 92 DAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTF---PEHLPALEMLVIEACKE----LSVSVSSLPALCKLKIG 164 (387)
Q Consensus 92 ~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~---~~~~~~L~~L~l~~~~~----l~~~~~~~~~L~~L~i~ 164 (387)
+++. +..... ..+..+++|++|+++++. +.+.. ...+++|+.|+++++.. ++..+..+++|++|+++
T Consensus 84 ~~n~-l~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls 157 (276)
T 2z62_A 84 TGNP-IQSLAL----GAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (276)
T ss_dssp TTCC-CCEECT----TTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred CCCc-cCccCh----hhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECC
Confidence 7643 333332 344467788888887663 32111 22467888888877652 33567788899999998
Q ss_pred CccceeEe-cccccCCCCc----EEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEec
Q 043667 165 GCKKVVWR-SATDHLGSQN----SVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTID 239 (387)
Q Consensus 165 ~~~~~~~~-~~~~~~~~L~----~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 239 (387)
++....+. ..+..+++|+ +|+++++. +..++... ....+|++ +.++++. ++.++...++.+++|++|+++
T Consensus 158 ~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~-l~~~~~~~-~~~~~L~~--L~L~~n~-l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGA-FKEIRLKE--LALDTNQ-LKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp SSCCCEECGGGGHHHHTCTTCCEEEECCSSC-CCEECTTS-SCSCCEEE--EECCSSC-CSCCCTTTTTTCCSCCEEECC
T ss_pred CCCCCcCCHHHhhhhhhccccceeeecCCCc-ccccCccc-cCCCcccE--EECCCCc-eeecCHhHhcccccccEEEcc
Confidence 87655533 3344445555 77887653 33333321 22336777 8888765 667777767889999999999
Q ss_pred CCCCc
Q 043667 240 WCPKL 244 (387)
Q Consensus 240 ~~~~l 244 (387)
+++-.
T Consensus 233 ~N~~~ 237 (276)
T 2z62_A 233 TNPWD 237 (276)
T ss_dssp SSCBC
T ss_pred CCccc
Confidence 75443
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.46 E-value=3.5e-12 Score=113.74 Aligned_cols=193 Identities=16% Similarity=0.130 Sum_probs=123.5
Q ss_pred CCCCcceEeeccCcccccccCCC-CCCccEEEeccCccc---cccccCCCCcceEEEcCccceeEecccccCCCCcEEec
Q 043667 111 GFPKLRELHILRCSKLQGTFPEH-LPALEMLVIEACKEL---SVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVC 186 (387)
Q Consensus 111 ~~~~L~~L~l~~~~~l~~~~~~~-~~~L~~L~l~~~~~l---~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l 186 (387)
.+++++++++++. .++ .+|.. .++++.|+++++..- ...+..+++|++|+++++....+... ..+++|++|++
T Consensus 8 ~l~~l~~l~~~~~-~l~-~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKR-NLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTS-CCS-SCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred ccCCccEEECCCC-CCC-cCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 3556666666554 333 34433 345666766665422 13567778888888887654444433 56788888888
Q ss_pred cCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCc
Q 043667 187 RDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRL 266 (387)
Q Consensus 187 ~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L 266 (387)
+++. +..++.. ...+++|++ |.++++ .++.++...++.+++|++|+++++ .+..+++. .+..+ ++|
T Consensus 85 s~N~-l~~l~~~-~~~l~~L~~--L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~----~~~~l----~~L 150 (290)
T 1p9a_G 85 SHNQ-LQSLPLL-GQTLPALTV--LDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLPPG----LLTPT----PKL 150 (290)
T ss_dssp CSSC-CSSCCCC-TTTCTTCCE--EECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTT----TTTTC----TTC
T ss_pred CCCc-CCcCchh-hccCCCCCE--EECCCC-cCcccCHHHHcCCCCCCEEECCCC-CCCccChh----hcccc----cCC
Confidence 8653 3344433 456667777 777664 355566555677888888888874 55555543 24444 788
Q ss_pred cEEEeccCCCCCCcccc-cCCCCCccEEEecCCCCceecCCCCcC-CCceEEEeccCC
Q 043667 267 EYLRLRYCKGLVKLPQS-SLSLSSLREIDIYDCSSLVSFPEVALP-SKLKKIEIRKCD 322 (387)
Q Consensus 267 ~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~-~~L~~L~l~~c~ 322 (387)
+.|+++++ .++.++.. +..+++|+.|++++ +.++.++...+. ++|+.+++.+++
T Consensus 151 ~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 151 EKLSLANN-NLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CEEECTTS-CCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CEEECCCC-cCCccCHHHhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCC
Confidence 88888774 46777754 45678888888887 577777765444 678888887654
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.45 E-value=8.7e-13 Score=116.61 Aligned_cols=154 Identities=25% Similarity=0.339 Sum_probs=72.5
Q ss_pred ccCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCC
Q 043667 152 VSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDIC 231 (387)
Q Consensus 152 ~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~ 231 (387)
+..+++|++|+++++....+ ..+..+++|++|+++++. +..++......+++|++ +.+.++. ++.++...++.++
T Consensus 59 l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~--L~L~~n~-l~~~~~~~~~~l~ 133 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKE--LVLVENQ-LQSLPDGVFDKLT 133 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE--EECTTSC-CCCCCTTTTTTCT
T ss_pred cccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCE--EECCCCc-CCccCHHHhccCC
Confidence 44555666666655432222 234455666666666542 22222221233444444 5554432 3333333344555
Q ss_pred CccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccc-cCCCCCccEEEecCCCCceecCCCCcC
Q 043667 232 SLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS-SLSLSSLREIDIYDCSSLVSFPEVALP 310 (387)
Q Consensus 232 ~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~ 310 (387)
+|++|+++++ .+..+++. .+..+ ++|++|++++| .++.++.. +..+++|+.|++++ +.++.++...+.
T Consensus 134 ~L~~L~L~~n-~l~~~~~~----~~~~l----~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~ 202 (272)
T 3rfs_A 134 NLTYLNLAHN-QLQSLPKG----VFDKL----TNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQ-NQLKSVPDGVFD 202 (272)
T ss_dssp TCCEEECCSS-CCCCCCTT----TTTTC----TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTT
T ss_pred CCCEEECCCC-ccCccCHH----HhccC----ccCCEEECCCC-CcCccCHHHhcCCccCCEEECCC-CcCCccCHHHHh
Confidence 6666666654 33333332 12333 56666666554 24444432 34555666666655 244444433222
Q ss_pred --CCceEEEeccC
Q 043667 311 --SKLKKIEIRKC 321 (387)
Q Consensus 311 --~~L~~L~l~~c 321 (387)
++|++|+++++
T Consensus 203 ~l~~L~~L~l~~N 215 (272)
T 3rfs_A 203 RLTSLQYIWLHDN 215 (272)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCcCCCEEEccCC
Confidence 55566655554
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.44 E-value=1.7e-12 Score=116.84 Aligned_cols=193 Identities=17% Similarity=0.183 Sum_probs=142.6
Q ss_pred CCCCcceEeeccCcccccccC--CCCCCccEEEeccCcccc-ccccCCCCcceEEEcCccceeEecccccCCCCcEEecc
Q 043667 111 GFPKLRELHILRCSKLQGTFP--EHLPALEMLVIEACKELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCR 187 (387)
Q Consensus 111 ~~~~L~~L~l~~~~~l~~~~~--~~~~~L~~L~l~~~~~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~ 187 (387)
.+++|+.|+++++ .+. .++ ..+++|+.|+++++.... ..+..+++|++|+++++....+ ..+..+++|++|+++
T Consensus 39 ~l~~L~~L~l~~~-~i~-~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 39 DLDGITTLSAFGT-GVT-TIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHTCCEEECTTS-CCC-CCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC-GGGTTCTTCCEEECT
T ss_pred HcCCcCEEEeeCC-Ccc-CchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc-hhhcCCCCCCEEECC
Confidence 4789999999887 333 333 347899999999886322 2388899999999998864443 456778999999999
Q ss_pred CCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCcc
Q 043667 188 DTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLE 267 (387)
Q Consensus 188 ~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~ 267 (387)
++. +..++. ...+++|++ +.++++. +..++. ++.+++|++|+++++ .+..++. +..+ ++|+
T Consensus 116 ~n~-l~~~~~--l~~l~~L~~--L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~------l~~l----~~L~ 176 (308)
T 1h6u_A 116 STQ-ITDVTP--LAGLSNLQV--LYLDLNQ-ITNISP--LAGLTNLQYLSIGNA-QVSDLTP------LANL----SKLT 176 (308)
T ss_dssp TSC-CCCCGG--GTTCTTCCE--EECCSSC-CCCCGG--GGGCTTCCEEECCSS-CCCCCGG------GTTC----TTCC
T ss_pred CCC-CCCchh--hcCCCCCCE--EECCCCc-cCcCcc--ccCCCCccEEEccCC-cCCCChh------hcCC----CCCC
Confidence 875 333332 467788888 8888764 444443 668899999999986 5555543 4444 8999
Q ss_pred EEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCcccc
Q 043667 268 YLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPE 329 (387)
Q Consensus 268 ~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 329 (387)
+|+++++ .++.++. +..+++|+.|++++ +.++.++.....++|+.|++++++ +...|.
T Consensus 177 ~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~-N~l~~~~~l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 177 TLKADDN-KISDISP-LASLPNLIEVHLKN-NQISDVSPLANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp EEECCSS-CCCCCGG-GGGCTTCCEEECTT-SCCCBCGGGTTCTTCCEEEEEEEE-EECCCE
T ss_pred EEECCCC-ccCcChh-hcCCCCCCEEEccC-CccCccccccCCCCCCEEEccCCe-eecCCe
Confidence 9999986 4777775 77899999999998 477777644444899999999865 665554
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.39 E-value=9.9e-13 Score=118.55 Aligned_cols=149 Identities=17% Similarity=0.186 Sum_probs=73.9
Q ss_pred CccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCccc--chhhHHHHHHhhhhhccCCccEEEeccCCCCCCc
Q 043667 203 LPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQS--LVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL 280 (387)
Q Consensus 203 l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~ 280 (387)
+++|++ +.++++. +..++...++.+++|++|+++++.-... ++... .+..+ ++|++|++++| .++.+
T Consensus 144 ~~~L~~--L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---~~~~l----~~L~~L~Ls~N-~l~~l 212 (310)
T 4glp_A 144 KPGLKV--LSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAAL---CPHKF----PAIQNLALRNT-GMETP 212 (310)
T ss_dssp CSCCCE--EEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTS---CTTSS----CCCCSCBCCSS-CCCCH
T ss_pred ccCCCE--EEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHH---hhhcC----CCCCEEECCCC-CCCch
Confidence 344444 4444433 2333333345566666666666432221 11000 01222 56666666654 34443
Q ss_pred ccc----cCCCCCccEEEecCCCCceec-CCC--Cc--CCCceEEEeccCCCCCccccccccCCCCCcceEecccCcccc
Q 043667 281 PQS----SLSLSSLREIDIYDCSSLVSF-PEV--AL--PSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLT 351 (387)
Q Consensus 281 ~~~----~~~~~~L~~L~l~~c~~l~~~-~~~--~~--~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~ 351 (387)
+.. +..+++|+.|++++ +.++.+ |.. .+ +++|++|++++| .++.+|..+ .++ |++|+++++ +++
T Consensus 213 ~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~--~~~--L~~L~Ls~N-~l~ 285 (310)
T 4glp_A 213 TGVCAALAAAGVQPHSLDLSH-NSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGL--PAK--LRVLDLSSN-RLN 285 (310)
T ss_dssp HHHHHHHHHHTCCCSSEECTT-SCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCC--CSC--CSCEECCSC-CCC
T ss_pred HHHHHHHHhcCCCCCEEECCC-CCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhh--cCC--CCEEECCCC-cCC
Confidence 331 23456666666665 344443 211 11 156777777663 356666554 234 777777774 566
Q ss_pred cccCCCCCCCccEEeecC
Q 043667 352 YIAGVQLPPSLKRLDIWN 369 (387)
Q Consensus 352 ~~~~~~~~~~L~~L~l~~ 369 (387)
.++....+++|++|++++
T Consensus 286 ~~~~~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 286 RAPQPDELPEVDNLTLDG 303 (310)
T ss_dssp SCCCTTSCCCCSCEECSS
T ss_pred CCchhhhCCCccEEECcC
Confidence 654444556777777776
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.32 E-value=1.4e-11 Score=111.00 Aligned_cols=201 Identities=13% Similarity=0.081 Sum_probs=124.6
Q ss_pred CCccEEEeccCccc---cccc--cCCCCcceEEEcCccceeEe-----cccccCCCCcEEeccCCCCcccccCCCCCCCc
Q 043667 135 PALEMLVIEACKEL---SVSV--SSLPALCKLKIGGCKKVVWR-----SATDHLGSQNSVVCRDTSNQVFLAGPLKPQLP 204 (387)
Q Consensus 135 ~~L~~L~l~~~~~l---~~~~--~~~~~L~~L~i~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~ 204 (387)
++|++|+++++... +..+ ..+++|++|+++++...... ..+..+++|++|+++++.- ...+......++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS-PAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc-chhhHHHhccCC
Confidence 34555555554311 1222 55666666666665432210 1123467777777776543 333322245667
Q ss_pred cccceeEEEcCCCCccc--ccc-cccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCc-
Q 043667 205 KLEELILSTKEQTYIWK--SHD-GLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL- 280 (387)
Q Consensus 205 ~L~~l~L~l~~~~~~~~--~~~-~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~- 280 (387)
+|++ |.++++..... ++. ..++.+++|++|++++| .++.++... ...+..+ ++|++|+++++. ++.+
T Consensus 170 ~L~~--L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~-~~l~~~l----~~L~~L~Ls~N~-l~~~~ 240 (310)
T 4glp_A 170 ALTS--LDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVC-AALAAAG----VQPHSLDLSHNS-LRATV 240 (310)
T ss_dssp TCCE--EECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHH-HHHHHHT----CCCSSEECTTSC-CCCCC
T ss_pred CCCE--EECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHH-HHHHhcC----CCCCEEECCCCC-CCccc
Confidence 7777 77777654321 222 22357889999999986 555444321 1113444 999999999865 6655
Q ss_pred ccccCCC---CCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcceEecccCccccc
Q 043667 281 PQSSLSL---SSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTY 352 (387)
Q Consensus 281 ~~~~~~~---~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~ 352 (387)
|..+..+ ++|+.|++++ +.++.+|... +++|++|+++++ .++.+|. +..+++ |+.|+++++ .+++
T Consensus 241 p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~-~~~L~~L~Ls~N-~l~~~~~-~~~l~~--L~~L~L~~N-~l~~ 308 (310)
T 4glp_A 241 NPSAPRCMWSSALNSLNLSF-AGLEQVPKGL-PAKLRVLDLSSN-RLNRAPQ-PDELPE--VDNLTLDGN-PFLV 308 (310)
T ss_dssp CSCCSSCCCCTTCCCEECCS-SCCCSCCSCC-CSCCSCEECCSC-CCCSCCC-TTSCCC--CSCEECSST-TTSC
T ss_pred hhhHHhccCcCcCCEEECCC-CCCCchhhhh-cCCCCEEECCCC-cCCCCch-hhhCCC--ccEEECcCC-CCCC
Confidence 6655555 7999999998 5788887644 489999999985 4777765 444566 999999994 5543
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.31 E-value=2e-11 Score=108.95 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=52.3
Q ss_pred CCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCC
Q 043667 6 KNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPR 85 (387)
Q Consensus 6 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 85 (387)
++|++|+++++.+..++. +.. +++|++|++++| .++.++.++.+++|++|+++++ .++.++. +..+++
T Consensus 46 ~~L~~L~l~~~~i~~~~~-~~~--l~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~-------l~~l~~ 113 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQG-IQY--LPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDEN-KVKDLSS-------LKDLKK 113 (291)
T ss_dssp HTCCEEECTTSCCCCCTT-GGG--CTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCGGG-------GTTCTT
T ss_pred CcccEEEccCCCcccChh-Hhc--CCCCCEEEccCC-ccCCCcccccCCCCCEEECCCC-cCCCChh-------hccCCC
Confidence 456666666666555543 333 666666666664 4555555666666666666666 3443322 234566
Q ss_pred cceeeccccCCccccccCcCCCCccCCCCcceEeeccC
Q 043667 86 LETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRC 123 (387)
Q Consensus 86 L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~ 123 (387)
|++|+++++. +... ..+..+++|+.|+++++
T Consensus 114 L~~L~L~~n~-i~~~------~~l~~l~~L~~L~l~~n 144 (291)
T 1h6t_A 114 LKSLSLEHNG-ISDI------NGLVHLPQLESLYLGNN 144 (291)
T ss_dssp CCEEECTTSC-CCCC------GGGGGCTTCCEEECCSS
T ss_pred CCEEECCCCc-CCCC------hhhcCCCCCCEEEccCC
Confidence 6666665532 2211 12223555555555554
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.30 E-value=1.9e-11 Score=102.49 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=29.3
Q ss_pred CCCccEEEeccCcccc--ccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCC
Q 043667 134 LPALEMLVIEACKELS--VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDT 189 (387)
Q Consensus 134 ~~~L~~L~l~~~~~l~--~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~ 189 (387)
+++|+.|++++|..+. ..+..+++|++|+++++....+. .+..+++|++|++++.
T Consensus 135 l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 135 LPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC
T ss_pred CCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCc
Confidence 4555555555543111 24555666666666665433322 4455667777776654
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.28 E-value=1e-10 Score=101.96 Aligned_cols=171 Identities=21% Similarity=0.208 Sum_probs=86.7
Q ss_pred CcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEE
Q 043667 157 ALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKL 236 (387)
Q Consensus 157 ~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L 236 (387)
+.+.++..+.....++..+ .+++++|+++++. +..++......+++|++ |.++++ .+..++...+..+++|++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~--L~L~~n-~l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI--PADTEKLDLQSTG-LATLSDATFRGLTKLTW--LNLDYN-QLQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC--CTTCCEEECTTSC-CCCCCTTTTTTCTTCCE--EECTTS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCeEEecCCCCccccCCCC--CCCCCEEEccCCC-cCccCHhHhcCcccCCE--EECCCC-cCCccCHhHhccCCcCCEE
Confidence 3455666554433333322 2567777776543 22232222445555555 666554 2333444434556666666
Q ss_pred EecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccc-cCCCCCccEEEecCCCCceecCCCCcC--CCc
Q 043667 237 TIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS-SLSLSSLREIDIYDCSSLVSFPEVALP--SKL 313 (387)
Q Consensus 237 ~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L 313 (387)
+++++ .+..+++. .+..+ ++|++|+++++ .++.++.. +..+++|+.|++++ +.++.++...+. ++|
T Consensus 89 ~L~~n-~l~~~~~~----~~~~l----~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L 157 (251)
T 3m19_A 89 GLANN-QLASLPLG----VFDHL----TQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNL 157 (251)
T ss_dssp ECTTS-CCCCCCTT----TTTTC----TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTC
T ss_pred ECCCC-cccccChh----Hhccc----CCCCEEEcCCC-cCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCC
Confidence 66653 34444332 23333 66666666653 35555543 34566666666665 355555543332 566
Q ss_pred eEEEeccCCCCCcccc-ccccCCCCCcceEecccC
Q 043667 314 KKIEIRKCDALKSLPE-AWMCDTNSSLETLKIERC 347 (387)
Q Consensus 314 ~~L~l~~c~~l~~l~~-~~~~~~~~~L~~L~l~~c 347 (387)
++|+++++ .++.++. .+..+++ |++|+++++
T Consensus 158 ~~L~L~~N-~l~~~~~~~~~~l~~--L~~L~l~~N 189 (251)
T 3m19_A 158 QTLSLSTN-QLQSVPHGAFDRLGK--LQTITLFGN 189 (251)
T ss_dssp CEEECCSS-CCSCCCTTTTTTCTT--CCEEECCSC
T ss_pred CEEECCCC-cCCccCHHHHhCCCC--CCEEEeeCC
Confidence 66666653 3444443 3333444 666666663
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.28 E-value=4e-11 Score=106.95 Aligned_cols=129 Identities=19% Similarity=0.200 Sum_probs=82.6
Q ss_pred CCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcc
Q 043667 202 QLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLP 281 (387)
Q Consensus 202 ~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~ 281 (387)
.+++|++ +.++++. ++.++. ++.+++|++|+++++ .+..++ .+..+ ++|+.|++++| .++.+
T Consensus 88 ~l~~L~~--L~l~~n~-l~~~~~--l~~l~~L~~L~L~~n-~i~~~~------~l~~l----~~L~~L~l~~n-~l~~~- 149 (291)
T 1h6t_A 88 NLKNLGW--LFLDENK-VKDLSS--LKDLKKLKSLSLEHN-GISDIN------GLVHL----PQLESLYLGNN-KITDI- 149 (291)
T ss_dssp TCTTCCE--EECCSSC-CCCGGG--GTTCTTCCEEECTTS-CCCCCG------GGGGC----TTCCEEECCSS-CCCCC-
T ss_pred cCCCCCE--EECCCCc-CCCChh--hccCCCCCEEECCCC-cCCCCh------hhcCC----CCCCEEEccCC-cCCcc-
Confidence 3444444 4444432 333332 567788888888875 455442 24444 88888888875 46666
Q ss_pred cccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcceEecccCccccccc
Q 043667 282 QSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIA 354 (387)
Q Consensus 282 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~ 354 (387)
..+..+++|+.|++++| .++.++.....++|++|++++| .+++++. +..+++ |+.|+++++ .++..+
T Consensus 150 ~~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~L~~N-~i~~l~~-l~~l~~--L~~L~l~~n-~i~~~~ 216 (291)
T 1h6t_A 150 TVLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKN-HISDLRA-LAGLKN--LDVLELFSQ-ECLNKP 216 (291)
T ss_dssp GGGGGCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCBCGG-GTTCTT--CSEEEEEEE-EEECCC
T ss_pred hhhccCCCCCEEEccCC-ccccchhhcCCCccCEEECCCC-cCCCChh-hccCCC--CCEEECcCC-cccCCc
Confidence 45677888888888874 6666654333378888888875 4777764 555666 888888885 454443
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.26 E-value=2.4e-12 Score=119.69 Aligned_cols=225 Identities=12% Similarity=0.118 Sum_probs=108.1
Q ss_pred CCCCcceEeeccCcccccc----c---CCCCCCccEEEeccCc--ccc-----------ccccCCCCcceEEEcCcccee
Q 043667 111 GFPKLRELHILRCSKLQGT----F---PEHLPALEMLVIEACK--ELS-----------VSVSSLPALCKLKIGGCKKVV 170 (387)
Q Consensus 111 ~~~~L~~L~l~~~~~l~~~----~---~~~~~~L~~L~l~~~~--~l~-----------~~~~~~~~L~~L~i~~~~~~~ 170 (387)
.+++|+.|+++++ .+... + ...+++|+.|++++|. .+. ..+..+++|++|+++++....
T Consensus 30 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 30 EDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred cCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 4677888888876 33211 1 2246677777777652 111 113456677777776654322
Q ss_pred -----EecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccC---------CCccEE
Q 043667 171 -----WRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDI---------CSLKKL 236 (387)
Q Consensus 171 -----~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~---------~~L~~L 236 (387)
++..+..+++|++|++++|.--...+ ..++.. +..+ ++|++|
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~-----------------------~~l~~~-l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG-----------------------AKIARA-LQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHH-----------------------HHHHHH-HHHHHHHHHHHTCCCCCEE
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHH-----------------------HHHHHH-HHHHhhhhhcccCCCCcEE
Confidence 22334455666666666543110000 001100 1122 566666
Q ss_pred EecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCC------cccccCCCCCccEEEecCCCCc-----eecC
Q 043667 237 TIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK------LPQSSLSLSSLREIDIYDCSSL-----VSFP 305 (387)
Q Consensus 237 ~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~------~~~~~~~~~~L~~L~l~~c~~l-----~~~~ 305 (387)
++++|. +.......+...+... ++|++|++++|. ++. ++..+..+++|+.|++++| .+ ..++
T Consensus 165 ~L~~n~-l~~~~~~~l~~~l~~~----~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~ 237 (386)
T 2ca6_A 165 ICGRNR-LENGSMKEWAKTFQSH----RLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALA 237 (386)
T ss_dssp ECCSSC-CTGGGHHHHHHHHHHC----TTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHH
T ss_pred ECCCCC-CCcHHHHHHHHHHHhC----CCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHH
Confidence 666643 2211111111233333 666666666653 331 2224556666666666664 34 2222
Q ss_pred CC-CcCCCceEEEeccCCCCCc-----ccccccc--CCCCCcceEecccCccccc-----ccCC--CCCCCccEEeecCC
Q 043667 306 EV-ALPSKLKKIEIRKCDALKS-----LPEAWMC--DTNSSLETLKIERCRSLTY-----IAGV--QLPPSLKRLDIWNC 370 (387)
Q Consensus 306 ~~-~~~~~L~~L~l~~c~~l~~-----l~~~~~~--~~~~~L~~L~l~~c~~l~~-----~~~~--~~~~~L~~L~l~~C 370 (387)
.. ...++|++|++++|. ++. ++..+.. .++ |++|++++| .++. ++.. ..+++|++|++++|
T Consensus 238 ~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~--L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIG--LQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCC--CCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred HHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCC--eEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 11 112566677766654 433 2333322 334 777777664 4544 4432 22466777777664
Q ss_pred c
Q 043667 371 D 371 (387)
Q Consensus 371 ~ 371 (387)
+
T Consensus 314 ~ 314 (386)
T 2ca6_A 314 R 314 (386)
T ss_dssp B
T ss_pred c
Confidence 4
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.23 E-value=1e-12 Score=122.32 Aligned_cols=34 Identities=6% Similarity=-0.014 Sum_probs=15.9
Q ss_pred CCCccEEEeecCCCCCCC-----C-CcCCcCCCcEEEecCC
Q 043667 30 FSNLVTLKFEYCGMCPTL-----P-SVGQLPSLKHLAVCGM 64 (387)
Q Consensus 30 l~~L~~L~l~~c~~~~~l-----~-~~~~l~~L~~L~l~~~ 64 (387)
+++|++|++++| .++.. + .+..+++|++|+++++
T Consensus 31 ~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~ 70 (386)
T 2ca6_A 31 DDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDI 70 (386)
T ss_dssp CSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSC
T ss_pred CCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCccc
Confidence 455555555554 22221 1 1344555555555554
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.23 E-value=8.1e-11 Score=98.58 Aligned_cols=83 Identities=17% Similarity=0.235 Sum_probs=40.2
Q ss_pred cccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCC
Q 043667 227 LQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPE 306 (387)
Q Consensus 227 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 306 (387)
++.+++|++|+++++.-....+. .+..+ ++|++|++++|..+++++ .+..+++|+.|++++| .++.++.
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~~~-----~l~~l----~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~ 176 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSILT-----KINTL----PKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG 176 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGGHH-----HHTTC----SSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT
T ss_pred hcCCCCCCEEEecCCccCcHhHH-----HHhhC----CCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH
Confidence 44556666666665422211211 23333 566666666554455554 3455556666666553 3444432
Q ss_pred CCcCCCceEEEecc
Q 043667 307 VALPSKLKKIEIRK 320 (387)
Q Consensus 307 ~~~~~~L~~L~l~~ 320 (387)
....++|++|++++
T Consensus 177 l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 177 IEDFPKLNQLYAFS 190 (197)
T ss_dssp GGGCSSCCEEEECB
T ss_pred hccCCCCCEEEeeC
Confidence 22225555555554
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.22 E-value=6.8e-11 Score=115.81 Aligned_cols=165 Identities=16% Similarity=0.157 Sum_probs=119.6
Q ss_pred CCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCC
Q 043667 5 HKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFP 84 (387)
Q Consensus 5 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 84 (387)
+++|++|.++++.+..+|. +.. +++|+.|++++| .+..+++++.+++|+.|+++++ .+..++. +..++
T Consensus 42 L~~L~~L~l~~n~i~~l~~-l~~--l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N-~l~~l~~-------l~~l~ 109 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQG-IQY--LPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDEN-KIKDLSS-------LKDLK 109 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTT-GGG--CTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSS-CCCCCTT-------STTCT
T ss_pred CCCCCEEECcCCCCCCChH-Hcc--CCCCCEEEeeCC-CCCCChhhccCCCCCEEECcCC-CCCCChh-------hccCC
Confidence 4688889999888887774 454 889999999886 6777777889999999999988 5665542 45688
Q ss_pred CcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccc-cCCCCCCccEEEeccCcccc-ccccCCCCcceEE
Q 043667 85 RLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGT-FPEHLPALEMLVIEACKELS-VSVSSLPALCKLK 162 (387)
Q Consensus 85 ~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~-~~~~~~~L~~L~l~~~~~l~-~~~~~~~~L~~L~ 162 (387)
+|++|+++++. +... ..+..+++|+.|+++++ .+.+. ....+++|+.|+++++..-. ..+..+++|+.|+
T Consensus 110 ~L~~L~Ls~N~-l~~l------~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~ 181 (605)
T 1m9s_A 110 KLKSLSLEHNG-ISDI------NGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY 181 (605)
T ss_dssp TCCEEECTTSC-CCCC------GGGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred CCCEEEecCCC-CCCC------ccccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEE
Confidence 99999988754 2222 23445888999999887 33321 12347889999988876322 2377888999999
Q ss_pred EcCccceeEecccccCCCCcEEeccCCC
Q 043667 163 IGGCKKVVWRSATDHLGSQNSVVCRDTS 190 (387)
Q Consensus 163 i~~~~~~~~~~~~~~~~~L~~L~l~~~~ 190 (387)
++++....+ ..+..+++|+.|+++++.
T Consensus 182 Ls~N~i~~l-~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 182 LSKNHISDL-RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCSSCCCBC-GGGTTCTTCSEEECCSEE
T ss_pred CcCCCCCCC-hHHccCCCCCEEEccCCc
Confidence 988754443 456678888888888763
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.20 E-value=1.6e-12 Score=119.90 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=28.6
Q ss_pred EEcCcCCCCC-CCccCCccCCCccEEEeecCCCCCCCCC------cCCcC-CCcEEEecCCCCceE
Q 043667 12 CISGYRGAKF-PTWFGDSSFSNLVTLKFEYCGMCPTLPS------VGQLP-SLKHLAVCGMTSVKR 69 (387)
Q Consensus 12 ~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~l~~------~~~l~-~L~~L~l~~~~~l~~ 69 (387)
+++.+..... |..+.. .++|++|++++| .++..+. +..++ +|++|+++++ .+..
T Consensus 4 ~ls~n~~~~~~~~~~~~--~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~ 65 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSI--PHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGN-SLGF 65 (362)
T ss_dssp ECCCCTTCCHHHHHHTS--CTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGG
T ss_pred ccccccchHHHHHHHhC--CCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCC-CCCH
Confidence 4444444432 333332 445777777775 4554442 44566 6777777766 4443
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.19 E-value=4.1e-10 Score=98.10 Aligned_cols=172 Identities=19% Similarity=0.159 Sum_probs=117.4
Q ss_pred CccEEEeccCccccccccCCCCcceEEEcCccceeEe-cccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEc
Q 043667 136 ALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWR-SATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTK 214 (387)
Q Consensus 136 ~L~~L~l~~~~~l~~~~~~~~~L~~L~i~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~ 214 (387)
..+.++.++...-.......++++.|+++++....+. ..+..+++|++|+++++. +..++......+++|++ |.++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~--L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGT--LGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE--EECT
T ss_pred CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCE--EECC
Confidence 4456666554322111122367889998887655533 346678899999998763 44444433566788888 8887
Q ss_pred CCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCccc-ccCCCCCccEE
Q 043667 215 EQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ-SSLSLSSLREI 293 (387)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L 293 (387)
++. ++.++...++.+++|++|+++++ .+..+++. .+..+ ++|++|+++++ .++.++. .+..+++|+.|
T Consensus 92 ~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~----~~~~l----~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 92 NNQ-LASLPLGVFDHLTQLDKLYLGGN-QLKSLPSG----VFDRL----TKLKELRLNTN-QLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp TSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT----TTTTC----TTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCc-ccccChhHhcccCCCCEEEcCCC-cCCCcChh----HhccC----CcccEEECcCC-cCCccCHHHcCcCcCCCEE
Confidence 754 55666666778889999999885 56665543 24444 88999999885 5777776 47788899999
Q ss_pred EecCCCCceecCCCCcC--CCceEEEeccCC
Q 043667 294 DIYDCSSLVSFPEVALP--SKLKKIEIRKCD 322 (387)
Q Consensus 294 ~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~ 322 (387)
++++ +.++.++...+. ++|++|++++++
T Consensus 161 ~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 161 SLST-NQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp ECCS-SCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ECCC-CcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 9988 577777765443 789999998865
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.14 E-value=3e-10 Score=111.19 Aligned_cols=175 Identities=16% Similarity=0.136 Sum_probs=117.8
Q ss_pred ccCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCC
Q 043667 152 VSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDIC 231 (387)
Q Consensus 152 ~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~ 231 (387)
...+++|+.|++.++....++ .+..+++|+.|+++++. +..++. ...+++|+. |.++++. +..++ .+..++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~--L~Ls~N~-l~~l~--~l~~l~ 109 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP--LTNLKNLGW--LFLDENK-IKDLS--SLKDLK 109 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG--GGGCTTCCE--EECCSSC-CCCCT--TSTTCT
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh--hccCCCCCE--EECcCCC-CCCCh--hhccCC
Confidence 446678888888877644433 46778999999998764 333332 346777777 8887764 44444 256788
Q ss_pred CccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCC
Q 043667 232 SLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPS 311 (387)
Q Consensus 232 ~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 311 (387)
+|++|+++++ .+..++ .+..+ ++|+.|++++| .++.+ ..+..+++|+.|++++| .+..++.....+
T Consensus 110 ~L~~L~Ls~N-~l~~l~------~l~~l----~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~ 175 (605)
T 1m9s_A 110 KLKSLSLEHN-GISDIN------GLVHL----PQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDN-QISDIVPLAGLT 175 (605)
T ss_dssp TCCEEECTTS-CCCCCG------GGGGC----TTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSS-CCCCCGGGTTCT
T ss_pred CCCEEEecCC-CCCCCc------cccCC----CccCEEECCCC-ccCCc-hhhcccCCCCEEECcCC-cCCCchhhccCC
Confidence 8888888875 444443 24445 88888888875 46666 45778888888888874 566554433347
Q ss_pred CceEEEeccCCCCCccccccccCCCCCcceEecccCccccccc
Q 043667 312 KLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIA 354 (387)
Q Consensus 312 ~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~ 354 (387)
+|+.|++++| .+..++. +..+.+ |+.|++++| .+...+
T Consensus 176 ~L~~L~Ls~N-~i~~l~~-l~~l~~--L~~L~L~~N-~l~~~p 213 (605)
T 1m9s_A 176 KLQNLYLSKN-HISDLRA-LAGLKN--LDVLELFSQ-ECLNKP 213 (605)
T ss_dssp TCCEEECCSS-CCCBCGG-GTTCTT--CSEEECCSE-EEECCC
T ss_pred CCCEEECcCC-CCCCChH-HccCCC--CCEEEccCC-cCcCCc
Confidence 8888888875 4777653 555666 888888885 455444
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.14 E-value=4.3e-10 Score=109.05 Aligned_cols=174 Identities=20% Similarity=0.197 Sum_probs=100.6
Q ss_pred CccEEEeccCccccccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcC
Q 043667 136 ALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKE 215 (387)
Q Consensus 136 ~L~~L~l~~~~~l~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~ 215 (387)
+++.|+++++..-...-.-.++|++|+++++....++ ..+++|++|+++++ .+..++. ... +|++ |.+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~---~L~~--L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA---SLKH--LDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT---TCCE--EECCS
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc---CCCE--EECCC
Confidence 6778888776422111112367888888776544444 34677888877765 2333433 111 5555 66665
Q ss_pred CCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEe
Q 043667 216 QTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDI 295 (387)
Q Consensus 216 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l 295 (387)
+. ++.+|. .+++|+.|+++++ .+..++. .+++|++|++++| .++.+|. +. ++|+.|++
T Consensus 130 N~-l~~lp~----~l~~L~~L~Ls~N-~l~~lp~------------~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~L~L 187 (571)
T 3cvr_A 130 NQ-LTMLPE----LPALLEYINADNN-QLTMLPE------------LPTSLEVLSVRNN-QLTFLPE-LP--ESLEALDV 187 (571)
T ss_dssp SC-CSCCCC----CCTTCCEEECCSS-CCSCCCC------------CCTTCCEEECCSS-CCSCCCC-CC--TTCCEEEC
T ss_pred Cc-CCCCCC----cCccccEEeCCCC-ccCcCCC------------cCCCcCEEECCCC-CCCCcch-hh--CCCCEEEC
Confidence 43 334444 3567777777764 3444432 1267777777764 3566665 43 67777777
Q ss_pred cCCCCceecCCCCcCCCc-------eEEEeccCCCCCccccccccCCCCCcceEecccC
Q 043667 296 YDCSSLVSFPEVALPSKL-------KKIEIRKCDALKSLPEAWMCDTNSSLETLKIERC 347 (387)
Q Consensus 296 ~~c~~l~~~~~~~~~~~L-------~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c 347 (387)
++ +.++.+|. +..+| +.|++++| .++.+|..+..+++ |++|+++++
T Consensus 188 s~-N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~--L~~L~L~~N 240 (571)
T 3cvr_A 188 ST-NLLESLPA--VPVRNHHSEETEIFFRCREN-RITHIPENILSLDP--TCTIILEDN 240 (571)
T ss_dssp CS-SCCSSCCC--CC--------CCEEEECCSS-CCCCCCGGGGGSCT--TEEEECCSS
T ss_pred cC-CCCCchhh--HHHhhhcccccceEEecCCC-cceecCHHHhcCCC--CCEEEeeCC
Confidence 76 46666665 33456 77777663 46667766655555 777777774
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.11 E-value=8.2e-10 Score=94.74 Aligned_cols=125 Identities=22% Similarity=0.198 Sum_probs=66.7
Q ss_pred CCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccc-cCCCCCccEEEecCCCCceecCCCCc
Q 043667 231 CSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS-SLSLSSLREIDIYDCSSLVSFPEVAL 309 (387)
Q Consensus 231 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~ 309 (387)
++|++|+++++ .+..+.+. .+..+ ++|++|+++++ .++.++.. +..+++|+.|++++ +.++.++...+
T Consensus 40 ~~L~~L~Ls~n-~i~~~~~~----~~~~l----~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~ 108 (229)
T 3e6j_A 40 TNAQILYLHDN-QITKLEPG----VFDSL----INLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT-NQLTVLPSAVF 108 (229)
T ss_dssp TTCSEEECCSS-CCCCCCTT----TTTTC----TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTT
T ss_pred CCCCEEEcCCC-ccCccCHH----HhhCc----cCCcEEECCCC-CCCCcChhhcccCCCcCEEECCC-CcCCccChhHh
Confidence 55666666653 33333222 23333 56666666653 34555432 35566666666665 35555554333
Q ss_pred C--CCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCC--CCCCCccEEeecCC
Q 043667 310 P--SKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGV--QLPPSLKRLDIWNC 370 (387)
Q Consensus 310 ~--~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~C 370 (387)
. ++|++|+++++ .++.+|..+..+.+ |++|+++++ +++.++.. ..+++|++|++++.
T Consensus 109 ~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~--L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 109 DRLVHLKELFMCCN-KLTELPRGIERLTH--LTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp TTCTTCCEEECCSS-CCCSCCTTGGGCTT--CSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CcchhhCeEeccCC-cccccCcccccCCC--CCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCC
Confidence 2 56666666653 35566655555555 666666663 55555543 33456666666653
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.10 E-value=3.6e-10 Score=99.12 Aligned_cols=55 Identities=25% Similarity=0.175 Sum_probs=27.9
Q ss_pred CCCccEEEeccCcccc-ccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCC
Q 043667 134 LPALEMLVIEACKELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDT 189 (387)
Q Consensus 134 ~~~L~~L~l~~~~~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~ 189 (387)
+++|+.|+++++..-. ..+..+++|+.|+++++..... ..+..+++|+.|+++++
T Consensus 127 l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 127 LKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEE
T ss_pred cccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCC
Confidence 4455555555443111 2345556666666665543333 34455566666666654
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.10 E-value=2.1e-09 Score=104.30 Aligned_cols=181 Identities=17% Similarity=0.135 Sum_probs=108.1
Q ss_pred CcceEeeccCcccccccCC-CCCCccEEEeccCccccccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCc
Q 043667 114 KLRELHILRCSKLQGTFPE-HLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQ 192 (387)
Q Consensus 114 ~L~~L~l~~~~~l~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 192 (387)
+++.|+++++ .+. .+|. .+++|+.|+++++..-... ..+++|+.|+++++....++. +. .+|++|+++++. +
T Consensus 60 ~L~~L~Ls~n-~L~-~lp~~l~~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~-l~--~~L~~L~Ls~N~-l 132 (571)
T 3cvr_A 60 QFSELQLNRL-NLS-SLPDNLPPQITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPE-LP--ASLKHLDVDNNQ-L 132 (571)
T ss_dssp TCSEEECCSS-CCS-CCCSCCCTTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-C
T ss_pred CccEEEeCCC-CCC-ccCHhHcCCCCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcch-hh--cCCCEEECCCCc-C
Confidence 6777777766 454 3554 3567888887776533222 456778888887765444443 22 277888777653 3
Q ss_pred ccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEec
Q 043667 193 VFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLR 272 (387)
Q Consensus 193 ~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~ 272 (387)
..++. .+++|+. |.++++. ++.+|. .+++|++|+++++ .+..++. + .++|+.|+++
T Consensus 133 ~~lp~----~l~~L~~--L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N-~L~~lp~------l------~~~L~~L~Ls 188 (571)
T 3cvr_A 133 TMLPE----LPALLEY--INADNNQ-LTMLPE----LPTSLEVLSVRNN-QLTFLPE------L------PESLEALDVS 188 (571)
T ss_dssp SCCCC----CCTTCCE--EECCSSC-CSCCCC----CCTTCCEEECCSS-CCSCCCC------C------CTTCCEEECC
T ss_pred CCCCC----cCccccE--EeCCCCc-cCcCCC----cCCCcCEEECCCC-CCCCcch------h------hCCCCEEECc
Confidence 33332 4566666 7776654 444554 3567888888774 4444443 1 1677888887
Q ss_pred cCCCCCCcccccCCCCCc-------cEEEecCCCCceecCCCCc-CCCceEEEeccCCCCCccccc
Q 043667 273 YCKGLVKLPQSSLSLSSL-------REIDIYDCSSLVSFPEVAL-PSKLKKIEIRKCDALKSLPEA 330 (387)
Q Consensus 273 ~c~~l~~~~~~~~~~~~L-------~~L~l~~c~~l~~~~~~~~-~~~L~~L~l~~c~~l~~l~~~ 330 (387)
++ .++.+|. +.. +| +.|++++ +.++.+|.... .++|+.|++++++--..+|..
T Consensus 189 ~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 189 TN-LLESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp SS-CCSSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred CC-CCCchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 74 4667776 433 56 7788877 46777765332 277888888776533444444
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.07 E-value=1.8e-09 Score=94.68 Aligned_cols=146 Identities=20% Similarity=0.227 Sum_probs=77.8
Q ss_pred cccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHH
Q 043667 175 TDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKD 254 (387)
Q Consensus 175 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~ 254 (387)
+..+++|++|+++++ .+..++. ...+++|++ |.++++. ++.++. ++.+++|++|+++++ .+..++..
T Consensus 37 ~~~l~~L~~L~l~~n-~i~~l~~--l~~l~~L~~--L~L~~N~-i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~~---- 103 (263)
T 1xeu_A 37 QKELSGVQNFNGDNS-NIQSLAG--MQFFTNLKE--LHLSHNQ-ISDLSP--LKDLTKLEELSVNRN-RLKNLNGI---- 103 (263)
T ss_dssp HHHHTTCSEEECTTS-CCCCCTT--GGGCTTCCE--EECCSSC-CCCCGG--GTTCSSCCEEECCSS-CCSCCTTC----
T ss_pred hhhcCcCcEEECcCC-CcccchH--HhhCCCCCE--EECCCCc-cCCChh--hccCCCCCEEECCCC-ccCCcCcc----
Confidence 345677888877765 2333331 344555555 6665543 333333 455666666666663 33433321
Q ss_pred HHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccC
Q 043667 255 QQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCD 334 (387)
Q Consensus 255 ~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~ 334 (387)
..++|++|++++| .++.++ .+..+++|+.|++++ +.++.++.....++|++|+++++. ++++ ..+..+
T Consensus 104 -------~~~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~~l~~l~~L~~L~L~~N~-i~~~-~~l~~l 171 (263)
T 1xeu_A 104 -------PSACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRN-NKLKSIVMLGFLSKLEVLDLHGNE-ITNT-GGLTRL 171 (263)
T ss_dssp -------CCSSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTT-SCCCBCGGGGGCTTCCEEECTTSC-CCBC-TTSTTC
T ss_pred -------ccCcccEEEccCC-ccCCCh-hhcCcccccEEECCC-CcCCCChHHccCCCCCEEECCCCc-Ccch-HHhccC
Confidence 0156666666664 355544 355666666666665 355555432233666666666543 5544 333344
Q ss_pred CCCCcceEecccC
Q 043667 335 TNSSLETLKIERC 347 (387)
Q Consensus 335 ~~~~L~~L~l~~c 347 (387)
.+ |+.|+++++
T Consensus 172 ~~--L~~L~l~~N 182 (263)
T 1xeu_A 172 KK--VNWIDLTGQ 182 (263)
T ss_dssp CC--CCEEEEEEE
T ss_pred CC--CCEEeCCCC
Confidence 44 666666663
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.06 E-value=1.1e-09 Score=92.51 Aligned_cols=58 Identities=16% Similarity=0.147 Sum_probs=24.3
Q ss_pred CCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecC
Q 043667 179 GSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDW 240 (387)
Q Consensus 179 ~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 240 (387)
+++++|+++++. +..++......+++|++ +.+.++ .++.++...++.+++|++|++++
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~--L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 28 AQTTYLDLETNS-LKSLPNGVFDELTSLTQ--LYLGGN-KLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSE--EECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCcEEEcCCCc-cCcCChhhhcccccCcE--EECCCC-ccCccChhhcCCCCCcCEEECCC
Confidence 456666665542 22222222233444444 444433 23333333334444445554444
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.05 E-value=5.5e-11 Score=109.54 Aligned_cols=78 Identities=8% Similarity=-0.040 Sum_probs=39.4
Q ss_pred CCCcceEeeccCcccccccC-------CCCC-CccEEEeccCcccc---cccc----CC-CCcceEEEcCccceeE----
Q 043667 112 FPKLRELHILRCSKLQGTFP-------EHLP-ALEMLVIEACKELS---VSVS----SL-PALCKLKIGGCKKVVW---- 171 (387)
Q Consensus 112 ~~~L~~L~l~~~~~l~~~~~-------~~~~-~L~~L~l~~~~~l~---~~~~----~~-~~L~~L~i~~~~~~~~---- 171 (387)
.++|++|+++++. +.+..+ ..++ +|++|+++++..-. ..+. .. ++|++|+++++.....
T Consensus 21 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 21 PHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp CTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 4458888887763 432221 1245 67777777664221 1122 22 6677777766643221
Q ss_pred -ecccccC-CCCcEEeccCCC
Q 043667 172 -RSATDHL-GSQNSVVCRDTS 190 (387)
Q Consensus 172 -~~~~~~~-~~L~~L~l~~~~ 190 (387)
...+..+ ++|++|+++++.
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHHhCCCCccEEECcCCc
Confidence 1112233 566666666553
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.03 E-value=9.6e-10 Score=89.42 Aligned_cols=133 Identities=19% Similarity=0.328 Sum_probs=98.4
Q ss_pred cCCCccEEEecCCCCcc--cchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCcee-cC
Q 043667 229 DICSLKKLTIDWCPKLQ--SLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVS-FP 305 (387)
Q Consensus 229 ~~~~L~~L~l~~~~~l~--~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-~~ 305 (387)
..++|++|++++|. +. .++. .+..+ ++|+.|++++|. ++.+ ..+..+++|+.|+++++ .++. ++
T Consensus 22 ~~~~L~~L~l~~n~-l~~~~i~~-----~~~~l----~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~ 88 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SNDGKIEG-----LTAEF----VNLEFLSLINVG-LISV-SNLPKLPKLKKLELSEN-RIFGGLD 88 (168)
T ss_dssp CTTSCSEEECCSCB-CBTTBCSS-----CCGGG----GGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESC-CCCSCCC
T ss_pred CcccCCEEECCCCC-CChhhHHH-----HHHhC----CCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCC-cCchHHH
Confidence 35789999999864 44 4543 24444 899999999865 7766 66788999999999985 5655 43
Q ss_pred CCCc-CCCceEEEeccCCCCCccc--cccccCCCCCcceEecccCcccccccC----C-CCCCCccEEeecCCccccccc
Q 043667 306 EVAL-PSKLKKIEIRKCDALKSLP--EAWMCDTNSSLETLKIERCRSLTYIAG----V-QLPPSLKRLDIWNCDNIRTLT 377 (387)
Q Consensus 306 ~~~~-~~~L~~L~l~~c~~l~~l~--~~~~~~~~~~L~~L~l~~c~~l~~~~~----~-~~~~~L~~L~l~~C~~l~~l~ 377 (387)
.... .++|++|++++| .++.++ ..+..++. |++|+++++ .++.++. . ..+++|++|++++|+ ++++|
T Consensus 89 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~--L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~ 163 (168)
T 2ell_A 89 MLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLEC--LKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAP 163 (168)
T ss_dssp HHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSC--CCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred HHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCC--CCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence 2221 389999999986 578776 56666667 999999996 6777775 2 567899999999975 67777
Q ss_pred cc
Q 043667 378 VE 379 (387)
Q Consensus 378 ~~ 379 (387)
.+
T Consensus 164 ~~ 165 (168)
T 2ell_A 164 DS 165 (168)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.03 E-value=2.1e-09 Score=91.54 Aligned_cols=126 Identities=16% Similarity=0.208 Sum_probs=72.9
Q ss_pred cccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccc-
Q 043667 205 KLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS- 283 (387)
Q Consensus 205 ~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~- 283 (387)
.+++ |.+.++ .+..++...+..+++|++|+++++ .+..+.++ .+..+ ++|++|+++++ .++.++..
T Consensus 33 ~l~~--L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~----~~~~l----~~L~~L~Ls~N-~l~~l~~~~ 99 (220)
T 2v9t_B 33 TITE--IRLEQN-TIKVIPPGAFSPYKKLRRIDLSNN-QISELAPD----AFQGL----RSLNSLVLYGN-KITELPKSL 99 (220)
T ss_dssp TCCE--EECCSS-CCCEECTTSSTTCTTCCEEECCSS-CCCEECTT----TTTTC----SSCCEEECCSS-CCCCCCTTT
T ss_pred CCCE--EECCCC-cCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHH----HhhCC----cCCCEEECCCC-cCCccCHhH
Confidence 4455 666654 344555544566677777777764 44444332 34444 67777777663 45666654
Q ss_pred cCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCcccc-ccccCCCCCcceEecccC
Q 043667 284 SLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPE-AWMCDTNSSLETLKIERC 347 (387)
Q Consensus 284 ~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~-~~~~~~~~~L~~L~l~~c 347 (387)
+..+++|+.|++++ +.++.++...+. ++|++|+++++ .++.++. .+..+.+ |++|+++++
T Consensus 100 f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~--L~~L~L~~N 162 (220)
T 2v9t_B 100 FEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRA--IQTMHLAQN 162 (220)
T ss_dssp TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTT--CCEEECCSS
T ss_pred ccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCC--CCEEEeCCC
Confidence 45667777777776 456665544433 66777777664 3555553 2444455 777777663
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.03 E-value=1.3e-09 Score=88.69 Aligned_cols=105 Identities=18% Similarity=0.284 Sum_probs=73.3
Q ss_pred CCCCCcEEEEcCcCCC--CCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceE-eCccccCCCcc
Q 043667 4 PHKNLEQFCISGYRGA--KFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKR-LGSEFYGKGAA 80 (387)
Q Consensus 4 ~~~~L~~L~l~~~~~~--~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~~ 80 (387)
.+++|++|+++++... .+|..+.. +++|++|++++| .++.++.++.+++|++|+++++ .+.. ++.. .
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~--l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~------~ 91 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAE--FVNLEFLSLINV-GLISVSNLPKLPKLKKLELSEN-RIFGGLDML------A 91 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGG--GGGCCEEEEESS-CCCCCSSCCCCSSCCEEEEESC-CCCSCCCHH------H
T ss_pred CcccCCEEECCCCCCChhhHHHHHHh--CCCCCEEeCcCC-CCCChhhhccCCCCCEEECcCC-cCchHHHHH------H
Confidence 4578999999988877 78887766 889999999986 5777777888999999999988 4544 3322 2
Q ss_pred cCCCCcceeeccccCCccccc-cCcCCCCccCCCCcceEeeccC
Q 043667 81 IPFPRLETLRFDAMLGWEDWI-PLRSGQGVEGFPKLRELHILRC 123 (387)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~-~~~~~~~i~~~~~L~~L~l~~~ 123 (387)
..+++|++|+++++ .+..+. . ..+..+++|+.|+++++
T Consensus 92 ~~l~~L~~L~Ls~N-~l~~~~~~----~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 92 EKLPNLTHLNLSGN-KLKDISTL----EPLKKLECLKSLDLFNC 130 (168)
T ss_dssp HHCTTCCEEECBSS-SCCSSGGG----GGGSSCSCCCEEECCSS
T ss_pred hhCCCCCEEeccCC-ccCcchhH----HHHhcCCCCCEEEeeCC
Confidence 34778888888765 333321 1 22334667777777665
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.00 E-value=4e-09 Score=90.43 Aligned_cols=129 Identities=19% Similarity=0.188 Sum_probs=74.9
Q ss_pred CCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhh
Q 043667 179 GSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQ 258 (387)
Q Consensus 179 ~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 258 (387)
++|++|+++++. +..+.......+++|++ |.+.++. +..++...++.+++|+.|+++++ .+..+++. .+..
T Consensus 40 ~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~--L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~----~~~~ 110 (229)
T 3e6j_A 40 TNAQILYLHDNQ-ITKLEPGVFDSLINLKE--LYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVLPSA----VFDR 110 (229)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCCE--EECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT----TTTT
T ss_pred CCCCEEEcCCCc-cCccCHHHhhCccCCcE--EECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCccChh----HhCc
Confidence 455555555432 22222121334455555 5555443 44555554566777777777774 55555443 2444
Q ss_pred hhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCC
Q 043667 259 LCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCD 322 (387)
Q Consensus 259 l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~ 322 (387)
+ ++|++|+++++ .++.+|..+..+++|+.|++++ +.++.++...+. ++|+.|++.+++
T Consensus 111 l----~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 111 L----VHLKELFMCCN-KLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp C----TTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred c----hhhCeEeccCC-cccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 4 77777777764 4667777677777777777776 466666654333 677777777654
No 113
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.99 E-value=3.2e-09 Score=96.35 Aligned_cols=257 Identities=11% Similarity=0.047 Sum_probs=147.2
Q ss_pred CCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC--cCC--------cCCCcEEEecCCCCceEeCccc
Q 043667 5 HKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQ--------LPSLKHLAVCGMTSVKRLGSEF 74 (387)
Q Consensus 5 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~--------l~~L~~L~l~~~~~l~~~~~~~ 74 (387)
+++|+.|+++++.+..+...-+ .++.++.+.+... .+|. +.. +++|+.|.+.+ .++.++...
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~--~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~a 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAG--TYPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAA 119 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSS--SSGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTT
T ss_pred hccCeEEecCcceeEEecCccc--ccccccccccccc----ccCHHHhcccccccccccCCCcEEECCc--cccchhHHH
Confidence 5789999999888762211111 1344444444332 3443 455 78888888876 566676554
Q ss_pred cCCCcccCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccc--cccC----CCCCCcc-EEEeccCcc
Q 043667 75 YGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQ--GTFP----EHLPALE-MLVIEACKE 147 (387)
Q Consensus 75 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~--~~~~----~~~~~L~-~L~l~~~~~ 147 (387)
| ..+++|+++++.+.. +..... ..+..+.++..+......... ..+. ..+..|+ .+.+.....
T Consensus 120 F-----~~~~~L~~l~l~~n~-i~~i~~----~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~ 189 (329)
T 3sb4_A 120 F-----KGCDNLKICQIRKKT-APNLLP----EALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGK 189 (329)
T ss_dssp T-----TTCTTCCEEEBCCSS-CCEECT----TSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCC
T ss_pred h-----hcCcccceEEcCCCC-ccccch----hhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCc
Confidence 3 457788888887532 222221 222234444444433211000 0011 1134444 344444333
Q ss_pred cccc----ccCCCCcceEEEcCcccee-EecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccc
Q 043667 148 LSVS----VSSLPALCKLKIGGCKKVV-WRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKS 222 (387)
Q Consensus 148 l~~~----~~~~~~L~~L~i~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~ 222 (387)
+... .....+++.+.+.+.-... .......+++|+.+++.++. +..++...+..+++|++ +.+.+. +..+
T Consensus 190 l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~--l~l~~n--i~~I 264 (329)
T 3sb4_A 190 LEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLK--IKLPHN--LKTI 264 (329)
T ss_dssp HHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCE--EECCTT--CCEE
T ss_pred HHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCE--EECCcc--ccee
Confidence 3211 1123455666655431111 11111236888888888543 56666666778888888 888764 7778
Q ss_pred cccccccCCCcc-EEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCccc-ccCCCCCccEEEe
Q 043667 223 HDGLLQDICSLK-KLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ-SSLSLSSLREIDI 295 (387)
Q Consensus 223 ~~~~l~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l 295 (387)
+...|..+.+|+ .+.+.+ .+..+++. +|... ++|+++++.+ ..++.++. .+..+++|+.+..
T Consensus 265 ~~~aF~~~~~L~~~l~l~~--~l~~I~~~----aF~~c----~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 265 GQRVFSNCGRLAGTLELPA--SVTAIEFG----AFMGC----DNLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTTTTTTCTTCCEEEEECT--TCCEECTT----TTTTC----TTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred hHHHhhCChhccEEEEEcc--cceEEchh----hhhCC----ccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 888888899999 999986 67777665 45544 8999999866 45777765 5778888888763
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=1.2e-09 Score=99.10 Aligned_cols=229 Identities=13% Similarity=0.094 Sum_probs=119.3
Q ss_pred CCCcceEeeccCcccc--cccCCCCCCccEEEeccCccc--cccccCCCCcceEEEcCccceeEe-ccccc--------C
Q 043667 112 FPKLRELHILRCSKLQ--GTFPEHLPALEMLVIEACKEL--SVSVSSLPALCKLKIGGCKKVVWR-SATDH--------L 178 (387)
Q Consensus 112 ~~~L~~L~l~~~~~l~--~~~~~~~~~L~~L~l~~~~~l--~~~~~~~~~L~~L~i~~~~~~~~~-~~~~~--------~ 178 (387)
++++++|.+++..... ..+...+++|+.|+++++... ....+..+.++.+..... .++ ..+.. +
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~ 100 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGK 100 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEEC
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhccccccccccc
Confidence 5567888887532211 012223677888888776533 111122222233333222 111 22334 7
Q ss_pred CCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecC-----------------C
Q 043667 179 GSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDW-----------------C 241 (387)
Q Consensus 179 ~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~-----------------~ 241 (387)
++|+++.+.+ .+..++...+..+++|++ +.+.+.. +..++...+..+.++..+.... |
T Consensus 101 ~~L~~l~L~~--~i~~I~~~aF~~~~~L~~--l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 101 QTLEKVILSE--KIKNIEDAAFKGCDNLKI--CQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp TTCCC-CBCT--TCCEECTTTTTTCTTCCE--EEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred CCCcEEECCc--cccchhHHHhhcCcccce--EEcCCCC-ccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 8888888876 667777666778888888 8877543 4455666566666666665443 1
Q ss_pred CCcc---------cchhhHH-------------------HHHHhhhhhccCCccEEEeccCCCCCCccc-ccCCCCCccE
Q 043667 242 PKLQ---------SLVAEEE-------------------KDQQQQLCELSCRLEYLRLRYCKGLVKLPQ-SSLSLSSLRE 292 (387)
Q Consensus 242 ~~l~---------~~~~~~~-------------------~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~ 292 (387)
..++ .++...+ ...+..+...+++|+++++.++ .++.++. .+..+++|+.
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCE
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCE
Confidence 1111 0000000 0001111112466666666653 3555554 3556666666
Q ss_pred EEecCCCCceecCCCCcC--CCce-EEEeccCCCCCccc-cccccCCCCCcceEecccCcccccccCC
Q 043667 293 IDIYDCSSLVSFPEVALP--SKLK-KIEIRKCDALKSLP-EAWMCDTNSSLETLKIERCRSLTYIAGV 356 (387)
Q Consensus 293 L~l~~c~~l~~~~~~~~~--~~L~-~L~l~~c~~l~~l~-~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 356 (387)
+++.+ +++.++...|. ++|+ .+++.+ +++.++ ..+..+.+ |+.+++.+ ++++.++..
T Consensus 255 l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~--L~~l~l~~-n~i~~I~~~ 315 (329)
T 3sb4_A 255 IKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDN--LRYVLATG-DKITTLGDE 315 (329)
T ss_dssp EECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTT--EEEEEECS-SCCCEECTT
T ss_pred EECCc--ccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCcc--CCEEEeCC-CccCccchh
Confidence 66664 36666665555 5566 666654 455554 34444555 66666655 356666543
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.95 E-value=1.3e-08 Score=85.85 Aligned_cols=155 Identities=23% Similarity=0.342 Sum_probs=109.7
Q ss_pred ccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccc
Q 043667 204 PKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS 283 (387)
Q Consensus 204 ~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~ 283 (387)
++|++ +.++++. ++.++...++.+++|++|+++++ .+..++.. .+..+ ++|++|+++++ .++.++..
T Consensus 28 ~~l~~--L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~----~~~~l----~~L~~L~Ls~n-~l~~~~~~ 94 (208)
T 2o6s_A 28 AQTTY--LDLETNS-LKSLPNGVFDELTSLTQLYLGGN-KLQSLPNG----VFNKL----TSLTYLNLSTN-QLQSLPNG 94 (208)
T ss_dssp TTCSE--EECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTT----TTTTC----TTCCEEECCSS-CCCCCCTT
T ss_pred CCCcE--EEcCCCc-cCcCChhhhcccccCcEEECCCC-ccCccChh----hcCCC----CCcCEEECCCC-cCCccCHh
Confidence 45666 8888764 55666666778899999999884 55665543 24444 89999999885 46676654
Q ss_pred -cCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCccccc-cccCCCCCcceEecccCcccccccCCCCC
Q 043667 284 -SLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPEA-WMCDTNSSLETLKIERCRSLTYIAGVQLP 359 (387)
Q Consensus 284 -~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 359 (387)
+..+++|+.|++++ +.++.++...+. ++|++|+++++ .++.++.. +..+.+ |++|++++++ +. ...
T Consensus 95 ~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~--L~~L~l~~N~-~~-----~~~ 164 (208)
T 2o6s_A 95 VFDKLTQLKELALNT-NQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTS--LQYIWLHDNP-WD-----CTC 164 (208)
T ss_dssp TTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTT--CCEEECCSCC-BC-----CCT
T ss_pred HhcCccCCCEEEcCC-CcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCC--ccEEEecCCC-ee-----cCC
Confidence 57889999999988 577777765443 88999999885 47777653 455666 9999999863 21 345
Q ss_pred CCccEEeecCCccccccccccc
Q 043667 360 PSLKRLDIWNCDNIRTLTVEEG 381 (387)
Q Consensus 360 ~~L~~L~l~~C~~l~~l~~~~~ 381 (387)
++|++|+++.+..-..+|..+|
T Consensus 165 ~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 165 PGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp TTTHHHHHHHHHCTTTBBCTTS
T ss_pred CCHHHHHHHHHhCCceeeccCc
Confidence 6788888887555557776554
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.95 E-value=6.6e-09 Score=88.44 Aligned_cols=122 Identities=13% Similarity=0.181 Sum_probs=76.5
Q ss_pred EEEcCCCCcccc-cccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCccc-ccCCCC
Q 043667 211 LSTKEQTYIWKS-HDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ-SSLSLS 288 (387)
Q Consensus 211 L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~ 288 (387)
+.++++. ++.+ +...++.+++|++|+++++ .+..+++. .+..+ ++|++|+++++ .++.++. .+..++
T Consensus 37 L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~----~~~~l----~~L~~L~Ls~N-~l~~~~~~~~~~l~ 105 (220)
T 2v70_A 37 LRLNNNE-FTVLEATGIFKKLPQLRKINFSNN-KITDIEEG----AFEGA----SGVNEILLTSN-RLENVQHKMFKGLE 105 (220)
T ss_dssp EECCSSC-CCEECCCCCGGGCTTCCEEECCSS-CCCEECTT----TTTTC----TTCCEEECCSS-CCCCCCGGGGTTCS
T ss_pred EEcCCCc-CCccCchhhhccCCCCCEEECCCC-cCCEECHH----HhCCC----CCCCEEECCCC-ccCccCHhHhcCCc
Confidence 6776654 4433 3344567777888888774 45555443 34444 77788887774 3555554 366777
Q ss_pred CccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCcc-ccccccCCCCCcceEecccC
Q 043667 289 SLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSL-PEAWMCDTNSSLETLKIERC 347 (387)
Q Consensus 289 ~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l-~~~~~~~~~~~L~~L~l~~c 347 (387)
+|+.|++++ +.++.++...+. ++|++|+++++ .++.+ |..+..+.+ |++|+++++
T Consensus 106 ~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~--L~~L~L~~N 163 (220)
T 2v70_A 106 SLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHS--LSTLNLLAN 163 (220)
T ss_dssp SCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTT--CCEEECCSC
T ss_pred CCCEEECCC-CcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCC--CCEEEecCc
Confidence 788888877 466666544443 67777877774 36655 455555566 777777774
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.93 E-value=3.9e-09 Score=97.05 Aligned_cols=127 Identities=16% Similarity=0.160 Sum_probs=53.0
Q ss_pred CCCcEEeccCCCCcccccCCCCC-CCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHh
Q 043667 179 GSQNSVVCRDTSNQVFLAGPLKP-QLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQ 257 (387)
Q Consensus 179 ~~L~~L~l~~~~~l~~~~~~~~~-~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 257 (387)
+.++.|+++++. +..++..... .+++|++ |.++++ .+..++...+..+++|++|+++++ .+..+++. .+.
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~--L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~----~~~ 109 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHS--LLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEF----LFS 109 (361)
T ss_dssp TTCSEEECCSSC-CCEECTTSSSSCCTTCCE--EECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTT----TTT
T ss_pred CCCCEEECCCCC-CCccChhhhhhcccccCE--EECCCC-cCCccChhhccCCCCCCEEECCCC-cCCcCCHH----HhC
Confidence 345566665542 2333222222 4444444 444433 233333333444455555555542 23333322 133
Q ss_pred hhhhccCCccEEEeccCCCCCCc-ccccCCCCCccEEEecCCCCceecCCCCc-----CCCceEEEecc
Q 043667 258 QLCELSCRLEYLRLRYCKGLVKL-PQSSLSLSSLREIDIYDCSSLVSFPEVAL-----PSKLKKIEIRK 320 (387)
Q Consensus 258 ~l~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-----~~~L~~L~l~~ 320 (387)
.+ ++|+.|+++++. ++.+ +..+..+++|+.|++++ +.++.++...+ .++|+.|++++
T Consensus 110 ~l----~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 110 DL----QALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp TC----TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCS
T ss_pred CC----cCCCEEECCCCc-ccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCC
Confidence 33 455555554432 3333 22344445555555544 34444443322 24455555544
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.93 E-value=1.6e-09 Score=86.18 Aligned_cols=105 Identities=18% Similarity=0.281 Sum_probs=75.1
Q ss_pred CCCCCcEEEEcCcCCC--CCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceE-eCccccCCCcc
Q 043667 4 PHKNLEQFCISGYRGA--KFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKR-LGSEFYGKGAA 80 (387)
Q Consensus 4 ~~~~L~~L~l~~~~~~--~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~~ 80 (387)
.+++|++|+++++... .+|..+.. +++|++|++++| .++.++.++.+++|++|+++++ .+.. ++.. .
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~--l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~------~ 84 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDE--FEELEFLSTINV-GLTSIANLPKLNKLKKLELSDN-RVSGGLEVL------A 84 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTT--CTTCCEEECTTS-CCCCCTTCCCCTTCCEEECCSS-CCCSCTHHH------H
T ss_pred CCccCeEEEccCCcCChhHHHHHHhh--cCCCcEEECcCC-CCCCchhhhcCCCCCEEECCCC-cccchHHHH------h
Confidence 4578999999988877 78887776 899999999986 6777777888999999999988 4544 3322 2
Q ss_pred cCCCCcceeeccccCCcccc-ccCcCCCCccCCCCcceEeeccC
Q 043667 81 IPFPRLETLRFDAMLGWEDW-IPLRSGQGVEGFPKLRELHILRC 123 (387)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~-~~~~~~~~i~~~~~L~~L~l~~~ 123 (387)
..+++|++|+++++. +.+. .. ..+..+++|+.|+++++
T Consensus 85 ~~l~~L~~L~ls~N~-i~~~~~~----~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 85 EKCPNLTHLNLSGNK-IKDLSTI----EPLKKLENLKSLDLFNC 123 (149)
T ss_dssp HHCTTCCEEECTTSC-CCSHHHH----GGGGGCTTCCEEECTTC
T ss_pred hhCCCCCEEECCCCc-CCChHHH----HHHhhCCCCCEEeCcCC
Confidence 347888888888654 3332 11 22335677777777776
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.88 E-value=3.3e-08 Score=84.10 Aligned_cols=147 Identities=16% Similarity=0.215 Sum_probs=91.7
Q ss_pred ceEEEcCccceeEecccccCCCCcEEeccCCCCcccc-cCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEE
Q 043667 159 CKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFL-AGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLT 237 (387)
Q Consensus 159 ~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 237 (387)
+.++++++....++..+ .+.+++|+++++. +..+ +......+++|++ |.++++. ++.++...++.+++|++|+
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~--L~L~~N~-i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNE-FTVLEATGIFKKLPQLRK--INFSNNK-ITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSC-CCEECCCCCGGGCTTCCE--EECCSSC-CCEECTTTTTTCTTCCEEE
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCc-CCccCchhhhccCCCCCE--EECCCCc-CCEECHHHhCCCCCCCEEE
Confidence 45666554433333322 3467788887653 3333 2222456677777 7777654 5555555567788888888
Q ss_pred ecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCc-ccccCCCCCccEEEecCCCCceecCCCCcC--CCce
Q 043667 238 IDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL-PQSSLSLSSLREIDIYDCSSLVSFPEVALP--SKLK 314 (387)
Q Consensus 238 l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~ 314 (387)
++++ .+..+++. .+..+ ++|++|+++++. ++.+ +..+..+++|+.|++++ +.++.++...+. ++|+
T Consensus 88 Ls~N-~l~~~~~~----~~~~l----~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 88 LTSN-RLENVQHK----MFKGL----ESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLS 156 (220)
T ss_dssp CCSS-CCCCCCGG----GGTTC----SSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCC
T ss_pred CCCC-ccCccCHh----HhcCC----cCCCEEECCCCc-CCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCC
Confidence 8874 45555443 35555 788888888754 5555 45567788888888887 567776544443 7788
Q ss_pred EEEeccCC
Q 043667 315 KIEIRKCD 322 (387)
Q Consensus 315 ~L~l~~c~ 322 (387)
+|++++++
T Consensus 157 ~L~L~~N~ 164 (220)
T 2v70_A 157 TLNLLANP 164 (220)
T ss_dssp EEECCSCC
T ss_pred EEEecCcC
Confidence 88887754
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.88 E-value=5.4e-09 Score=85.68 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=75.0
Q ss_pred CCCCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccC
Q 043667 3 EPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIP 82 (387)
Q Consensus 3 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 82 (387)
..+.+|++|+++++....+|..... .++|++|++++| .++.++.++.+++|++|+++++ .+..++... ...
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~--~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~-----~~~ 86 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGAT--LDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNN-RICRIGEGL-----DQA 86 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGG--TTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSS-CCCEECSCH-----HHH
T ss_pred CCcCCceEEEeeCCCCchhHHhhhc--CCCCCEEECCCC-CCCcccccccCCCCCEEECCCC-cccccCcch-----hhc
Confidence 4567889999998888877653332 448999999886 6777777888899999999988 677776543 245
Q ss_pred CCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCc
Q 043667 83 FPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCS 124 (387)
Q Consensus 83 ~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~ 124 (387)
+++|++|+++++. +..+.. ...+..+++|+.|+++++.
T Consensus 87 l~~L~~L~L~~N~-i~~~~~---~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 87 LPDLTELILTNNS-LVELGD---LDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp CTTCCEEECCSCC-CCCGGG---GGGGGGCTTCCEEECCSSG
T ss_pred CCCCCEEECCCCc-CCcchh---hHhhhcCCCCCEEEecCCC
Confidence 7888888888643 232210 0123356777777777663
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.88 E-value=2.3e-11 Score=118.34 Aligned_cols=202 Identities=13% Similarity=0.061 Sum_probs=109.9
Q ss_pred cCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCC
Q 043667 153 SSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICS 232 (387)
Q Consensus 153 ~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~ 232 (387)
..+++|+.|+++++....++..+..+++|++|+++++..+..++. .+..+..... +...++.+++
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~--------------ll~~~~~~~~-~~~~l~~l~~ 410 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL--------------LMRALDPLLY-EKETLQYFST 410 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH--------------HHHHHCTGGG-HHHHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHH--------------HHHhcccccC-CHHHHHHHHh
Confidence 456777777777665445666666677777777654321111100 0000011111 1222455666
Q ss_pred ccEEEecCCCCcccchhhHH-HHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCC-cC
Q 043667 233 LKKLTIDWCPKLQSLVAEEE-KDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVA-LP 310 (387)
Q Consensus 233 L~~L~l~~~~~l~~~~~~~~-~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~ 310 (387)
|+.|+...+..+..+....+ ...+..+ ....|+.|+++++ .++.+|. +..+++|+.|++++ +.++.+|... ..
T Consensus 411 L~~L~~l~~n~~~~L~~l~l~~n~i~~l--~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~-N~l~~lp~~~~~l 485 (567)
T 1dce_A 411 LKAVDPMRAAYLDDLRSKFLLENSVLKM--EYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSH-NRLRALPPALAAL 485 (567)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHHHHHHHH--HHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCS-SCCCCCCGGGGGC
T ss_pred cccCcchhhcccchhhhhhhhccccccc--CccCceEEEecCC-CCCCCcC-ccccccCcEeecCc-ccccccchhhhcC
Confidence 66666222222222221100 0012221 1146777787774 5666765 77777788888877 4666665421 12
Q ss_pred CCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccc--cCC-CCCCCccEEeecCCcccccccccc
Q 043667 311 SKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYI--AGV-QLPPSLKRLDIWNCDNIRTLTVEE 380 (387)
Q Consensus 311 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~--~~~-~~~~~L~~L~l~~C~~l~~l~~~~ 380 (387)
++|+.|+++++ .++.+| .+..+++ |++|+++++ +++.+ |.. +.+++|++|++++ ++++.+|...
T Consensus 486 ~~L~~L~Ls~N-~l~~lp-~l~~l~~--L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~ 552 (567)
T 1dce_A 486 RCLEVLQASDN-ALENVD-GVANLPR--LQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQ 552 (567)
T ss_dssp TTCCEEECCSS-CCCCCG-GGTTCSS--CCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTT-SGGGGSSSCT
T ss_pred CCCCEEECCCC-CCCCCc-ccCCCCC--CcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecC-CcCCCCccHH
Confidence 77888888774 466676 5555666 888888774 66666 433 5567788888877 4466666443
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.86 E-value=2.7e-08 Score=84.60 Aligned_cols=108 Identities=18% Similarity=0.226 Sum_probs=62.0
Q ss_pred CCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCc
Q 043667 201 PQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL 280 (387)
Q Consensus 201 ~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~ 280 (387)
..+++|++ |.++++. +..+....+..+++|++|+++++ .+..+++. .+..+ ++|++|+++++ .++.+
T Consensus 53 ~~l~~L~~--L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~----~f~~l----~~L~~L~L~~N-~l~~~ 119 (220)
T 2v9t_B 53 SPYKKLRR--IDLSNNQ-ISELAPDAFQGLRSLNSLVLYGN-KITELPKS----LFEGL----FSLQLLLLNAN-KINCL 119 (220)
T ss_dssp TTCTTCCE--EECCSSC-CCEECTTTTTTCSSCCEEECCSS-CCCCCCTT----TTTTC----TTCCEEECCSS-CCCCC
T ss_pred hCCCCCCE--EECCCCc-CCCcCHHHhhCCcCCCEEECCCC-cCCccCHh----HccCC----CCCCEEECCCC-CCCEe
Confidence 34444444 5554432 33333333556677777777763 45555543 23444 77777777764 35554
Q ss_pred c-cccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCC
Q 043667 281 P-QSSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCD 322 (387)
Q Consensus 281 ~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~ 322 (387)
+ ..+..+++|+.|++++ +.++.++...+. ++|++|++++++
T Consensus 120 ~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 120 RVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 3 3466777777777776 466666654333 677777777643
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.86 E-value=1.4e-08 Score=93.26 Aligned_cols=167 Identities=17% Similarity=0.190 Sum_probs=109.9
Q ss_pred EEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccc-cCCCccEEEecCCCCcccchhhHHHHHHhhhhh
Q 043667 183 SVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQ-DICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCE 261 (387)
Q Consensus 183 ~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~ 261 (387)
.++.++. .+..+|...+. .++. |.++++ .++.++...+. .+++|+.|+++++ .+..+++. .+..+
T Consensus 22 ~l~c~~~-~l~~iP~~~~~---~l~~--L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~----~~~~l-- 87 (361)
T 2xot_A 22 ILSCSKQ-QLPNVPQSLPS---YTAL--LDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSE----AFVPV-- 87 (361)
T ss_dssp EEECCSS-CCSSCCSSCCT---TCSE--EECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTT----TTTTC--
T ss_pred EEEeCCC-CcCccCccCCC---CCCE--EECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChh----hccCC--
Confidence 4444432 34445443222 3555 778765 46666665565 7888999999874 56666543 35555
Q ss_pred ccCCccEEEeccCCCCCCccc-ccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCcccccc----ccC
Q 043667 262 LSCRLEYLRLRYCKGLVKLPQ-SSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPEAW----MCD 334 (387)
Q Consensus 262 ~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~~----~~~ 334 (387)
++|++|+++++ .++.++. .+..+++|+.|++++ +.++.++...+. ++|++|+++++ .++.++... ..+
T Consensus 88 --~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l 162 (361)
T 2xot_A 88 --PNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKL 162 (361)
T ss_dssp --TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----C
T ss_pred --CCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCC-CcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccC
Confidence 88999999885 4776665 467888899999988 567777655444 78999999874 577777653 235
Q ss_pred CCCCcceEecccCcccccccCC--CCCCC--ccEEeecCCc
Q 043667 335 TNSSLETLKIERCRSLTYIAGV--QLPPS--LKRLDIWNCD 371 (387)
Q Consensus 335 ~~~~L~~L~l~~c~~l~~~~~~--~~~~~--L~~L~l~~C~ 371 (387)
.+ |++|++++ ++++.++.. ..++. ++.|++.+.|
T Consensus 163 ~~--L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 163 PK--LMLLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp TT--CCEEECCS-SCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred Cc--CCEEECCC-CCCCccCHHHhhhccHhhcceEEecCCC
Confidence 55 88999988 477777643 23343 4778888743
No 124
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.85 E-value=7.3e-07 Score=82.85 Aligned_cols=223 Identities=9% Similarity=0.065 Sum_probs=147.9
Q ss_pred CccEEEeccCc-ccc-ccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEE
Q 043667 136 ALEMLVIEACK-ELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILST 213 (387)
Q Consensus 136 ~L~~L~l~~~~-~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l 213 (387)
+|+.+.+...- .+. ..+..+++|+.+++.++....+....-..++|+.+.+.+ ++..+....+..+++|+. +.+
T Consensus 158 ~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~--l~l 233 (401)
T 4fdw_A 158 TVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKT--IEI 233 (401)
T ss_dssp CCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCC--EEC
T ss_pred CceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCE--Eec
Confidence 57777776421 222 457788888888887655444444333357888888863 466666666777888888 887
Q ss_pred cCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCC----CCCccc-ccCCCC
Q 043667 214 KEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKG----LVKLPQ-SSLSLS 288 (387)
Q Consensus 214 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~----l~~~~~-~~~~~~ 288 (387)
.. .++.++...+.. .+|+.+.+.+ .+..++.. +|... ++|+++.+.+... .+.++. .+..|+
T Consensus 234 ~~--~l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~----aF~~c----~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~ 300 (401)
T 4fdw_A 234 PE--NVSTIGQEAFRE-SGITTVKLPN--GVTNIASR----AFYYC----PELAEVTTYGSTFNDDPEAMIHPYCLEGCP 300 (401)
T ss_dssp CT--TCCEECTTTTTT-CCCSEEEEET--TCCEECTT----TTTTC----TTCCEEEEESSCCCCCTTCEECTTTTTTCT
T ss_pred CC--CccCcccccccc-CCccEEEeCC--CccEEChh----HhhCC----CCCCEEEeCCccccCCcccEECHHHhhCCc
Confidence 65 466666666665 7899999854 56666654 34443 8899999876321 112443 467889
Q ss_pred CccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCcccc-ccccCCCCCcceEecccCcccccccCC---CCCCCc
Q 043667 289 SLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPE-AWMCDTNSSLETLKIERCRSLTYIAGV---QLPPSL 362 (387)
Q Consensus 289 ~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~L 362 (387)
+|+.+++. ++++.++...|. ++|+.+.+.. +++.+.. .+..+ + |+.+.+.+. .+..++.. +...++
T Consensus 301 ~L~~l~l~--~~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~--L~~l~l~~n-~~~~l~~~~F~~~~~~l 372 (401)
T 4fdw_A 301 KLARFEIP--ESIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-G--IKEVKVEGT-TPPQVFEKVWYGFPDDI 372 (401)
T ss_dssp TCCEECCC--TTCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-C--CCEEEECCS-SCCBCCCSSCCCSCTTC
T ss_pred cCCeEEeC--CceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-C--CCEEEEcCC-CCcccccccccCCCCCc
Confidence 99999997 468888887776 7899999854 4777764 44445 6 999999884 55555544 333567
Q ss_pred cEEeecCCcccccccccccccc
Q 043667 363 KRLDIWNCDNIRTLTVEEGVQS 384 (387)
Q Consensus 363 ~~L~l~~C~~l~~l~~~~~~~~ 384 (387)
..|.+-. ..+.......+|..
T Consensus 373 ~~l~vp~-~~~~~y~~a~~W~~ 393 (401)
T 4fdw_A 373 TVIRVPA-ESVEKYKNANGWRD 393 (401)
T ss_dssp CEEEECG-GGHHHHHHSTTGGG
T ss_pred cEEEeCH-HHHHHhhhccchhh
Confidence 7787776 44555554445544
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.80 E-value=1.3e-08 Score=83.38 Aligned_cols=128 Identities=14% Similarity=0.108 Sum_probs=93.9
Q ss_pred ccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCC
Q 043667 228 QDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEV 307 (387)
Q Consensus 228 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 307 (387)
..+++|++|+++++ .+..++. +..+ .++|+.|+++++ .++.+ ..+..+++|+.|++++ +.++.++..
T Consensus 16 ~~~~~L~~L~l~~n-~l~~i~~------~~~~---~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~-N~l~~~~~~ 82 (176)
T 1a9n_A 16 TNAVRDRELDLRGY-KIPVIEN------LGAT---LDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNN-NRICRIGEG 82 (176)
T ss_dssp ECTTSCEEEECTTS-CCCSCCC------GGGG---TTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCS-SCCCEECSC
T ss_pred CCcCCceEEEeeCC-CCchhHH------hhhc---CCCCCEEECCCC-CCCcc-cccccCCCCCEEECCC-CcccccCcc
Confidence 45778999999986 5555532 2222 259999999885 47766 5678899999999998 578888754
Q ss_pred Cc--CCCceEEEeccCCCCCcccc--ccccCCCCCcceEecccCcccccccCC-----CCCCCccEEeecCCcc
Q 043667 308 AL--PSKLKKIEIRKCDALKSLPE--AWMCDTNSSLETLKIERCRSLTYIAGV-----QLPPSLKRLDIWNCDN 372 (387)
Q Consensus 308 ~~--~~~L~~L~l~~c~~l~~l~~--~~~~~~~~~L~~L~l~~c~~l~~~~~~-----~~~~~L~~L~l~~C~~ 372 (387)
.+ .++|++|+++++ .+++++. .+..+++ |++|+++++ .++.++.. ..+++|++|++++++.
T Consensus 83 ~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~--L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 83 LDQALPDLTELILTNN-SLVELGDLDPLASLKS--LTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTT--CCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hhhcCCCCCEEECCCC-cCCcchhhHhhhcCCC--CCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 32 389999999985 4788876 5666667 999999996 66666642 3568899999988653
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.79 E-value=4.6e-08 Score=81.38 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=86.1
Q ss_pred EEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCccc-ccCCCCC
Q 043667 211 LSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ-SSLSLSS 289 (387)
Q Consensus 211 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~ 289 (387)
+...+ ..++.+|..+ .++|++|+++++ .+..++. .+..+ ++|++|+++++ .++.++. .+..+++
T Consensus 15 l~~~~-~~l~~ip~~~---~~~l~~L~L~~n-~i~~ip~-----~~~~l----~~L~~L~Ls~N-~i~~i~~~~f~~l~~ 79 (193)
T 2wfh_A 15 VRCSN-KGLKVLPKGI---PRDVTELYLDGN-QFTLVPK-----ELSNY----KHLTLIDLSNN-RISTLSNQSFSNMTQ 79 (193)
T ss_dssp EECTT-SCCSSCCSCC---CTTCCEEECCSS-CCCSCCG-----GGGGC----TTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred EEcCC-CCCCcCCCCC---CCCCCEEECCCC-cCchhHH-----Hhhcc----cCCCEEECCCC-cCCEeCHhHccCCCC
Confidence 45443 3466777653 468999999984 5666653 46666 89999999885 4676664 4778899
Q ss_pred ccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCccccc-cccCCCCCcceEecccC
Q 043667 290 LREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPEA-WMCDTNSSLETLKIERC 347 (387)
Q Consensus 290 L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~-~~~~~~~~L~~L~l~~c 347 (387)
|+.|++++ +.++.++...+. ++|++|+++++ .++.++.. +..+.+ |++|++++.
T Consensus 80 L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~--L~~L~L~~N 136 (193)
T 2wfh_A 80 LLTLILSY-NRLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSA--LSHLAIGAN 136 (193)
T ss_dssp CCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTT--CCEEECCSS
T ss_pred CCEEECCC-CccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCcc--ccEEEeCCC
Confidence 99999998 578888765554 88999999884 57777753 555666 999999884
No 127
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.78 E-value=1.8e-06 Score=80.08 Aligned_cols=40 Identities=15% Similarity=0.200 Sum_probs=22.4
Q ss_pred CCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCcc
Q 043667 30 FSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSE 73 (387)
Q Consensus 30 l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~ 73 (387)
+++|+.+.+.. .++.++. +..+.+|+.+++.. .++.++..
T Consensus 70 c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~ 111 (394)
T 4fs7_A 70 CRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPD--SVKMIGRC 111 (394)
T ss_dssp CTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTT
T ss_pred CCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCC--CceEccch
Confidence 45666666643 3555543 55666777776643 24555443
No 128
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.78 E-value=1.3e-06 Score=80.99 Aligned_cols=318 Identities=12% Similarity=0.090 Sum_probs=177.3
Q ss_pred CCCCCCCCcEEEEcCcCCCCCCCc-cCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCC
Q 043667 1 MLEPHKNLEQFCISGYRGAKFPTW-FGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGK 77 (387)
Q Consensus 1 ~~~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 77 (387)
+|..+.+|+.+.+.. ....+.+. +.. +++|+.+++.+ .++.++. +..+.+|+.+.+.. .++.++...|..
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~--c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~--~l~~i~~~aF~~ 138 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFEN--CSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPL--MLKSIGVEAFKG 138 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTT--CTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECTTTTTT
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhC--CCCCcEEEeCC--CceEccchhhcccccchhhcccC--ceeeecceeeec
Confidence 467788899888863 24444333 333 78999999965 3565554 66777887766643 355555443321
Q ss_pred CcccCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcc-cccccCCCCCCccEEEeccCc-ccc-ccccC
Q 043667 78 GAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSK-LQGTFPEHLPALEMLVIEACK-ELS-VSVSS 154 (387)
Q Consensus 78 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~-l~~~~~~~~~~L~~L~l~~~~-~l~-~~~~~ 154 (387)
...++..... ....... .....+.+|+.+.+..... +.......+++|+.+.+...- .+. ..+..
T Consensus 139 -----~~~~~~~~~~---~~~~i~~----~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~ 206 (394)
T 4fs7_A 139 -----CDFKEITIPE---GVTVIGD----EAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAE 206 (394)
T ss_dssp -----CCCSEEECCT---TCCEECT----TTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTT
T ss_pred -----ccccccccCc---cccccch----hhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCCceEeCchhhcc
Confidence 1211111111 1111111 2233467777777754311 111122235667777664421 111 34566
Q ss_pred CCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCcc
Q 043667 155 LPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLK 234 (387)
Q Consensus 155 ~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~ 234 (387)
++.|+.+.+..... .+........+|+.+.+.+ ....+.......+..++. +.+... ...+....+..+..++
T Consensus 207 ~~~L~~i~~~~~~~-~i~~~~~~~~~l~~i~ip~--~~~~i~~~~f~~~~~l~~--~~~~~~--~~~i~~~~F~~~~~l~ 279 (394)
T 4fs7_A 207 CILLENMEFPNSLY-YLGDFALSKTGVKNIIIPD--SFTELGKSVFYGCTDLES--ISIQNN--KLRIGGSLFYNCSGLK 279 (394)
T ss_dssp CTTCCBCCCCTTCC-EECTTTTTTCCCCEEEECT--TCCEECSSTTTTCSSCCE--EEECCT--TCEECSCTTTTCTTCC
T ss_pred ccccceeecCCCce-EeehhhcccCCCceEEECC--Cceeccccccccccccee--EEcCCC--cceeeccccccccccc
Confidence 67777666543221 1222233346777776653 233333333556666666 666542 3344555566778888
Q ss_pred EEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCccc-ccCCCCCccEEEecCCCCceecCCCCcC--C
Q 043667 235 KLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ-SSLSLSSLREIDIYDCSSLVSFPEVALP--S 311 (387)
Q Consensus 235 ~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~ 311 (387)
.+..... .++.. .+.. +.+|+++.+.+ .++.+.. .+..+.+|+.+++. .+++.++..+|. .
T Consensus 280 ~~~~~~~----~i~~~----~F~~----~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp--~~v~~I~~~aF~~c~ 343 (394)
T 4fs7_A 280 KVIYGSV----IVPEK----TFYG----CSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLP--YLVEEIGKRSFRGCT 343 (394)
T ss_dssp EEEECSS----EECTT----TTTT----CTTCCEEEECT--TCCEECTTTTTTCTTCCEECCC--TTCCEECTTTTTTCT
T ss_pred eeccCce----eeccc----cccc----ccccccccccc--ccceechhhhcCCCCCCEEEeC--CcccEEhHHhccCCC
Confidence 8777642 12222 2322 27888888854 3666654 36688899999886 358888877776 6
Q ss_pred CceEEEeccCCCCCcccc-ccccCCCCCcceEecccCcccccccCCCCCCCccEEeecCCcccccc
Q 043667 312 KLKKIEIRKCDALKSLPE-AWMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTL 376 (387)
Q Consensus 312 ~L~~L~l~~c~~l~~l~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~C~~l~~l 376 (387)
+|+.+++.. +++.+.. .+..+.+ |+.+.+.. .++.+.. ...+|.+|+.|
T Consensus 344 ~L~~i~lp~--~l~~I~~~aF~~C~~--L~~i~lp~--~~~~~~~----------~F~~c~~L~~I 393 (394)
T 4fs7_A 344 SLSNINFPL--SLRKIGANAFQGCIN--LKKVELPK--RLEQYRY----------DFEDTTKFKWI 393 (394)
T ss_dssp TCCEECCCT--TCCEECTTTBTTCTT--CCEEEEEG--GGGGGGG----------GBCTTCEEEEE
T ss_pred CCCEEEECc--cccEehHHHhhCCCC--CCEEEECC--CCEEhhh----------eecCCCCCcEE
Confidence 888888854 3777754 4555667 88888754 3433321 23567776655
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.77 E-value=2e-08 Score=79.80 Aligned_cols=123 Identities=22% Similarity=0.325 Sum_probs=61.2
Q ss_pred CCCccEEEecCCCCc-ccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCcee-cCCC
Q 043667 230 ICSLKKLTIDWCPKL-QSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVS-FPEV 307 (387)
Q Consensus 230 ~~~L~~L~l~~~~~l-~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~ 307 (387)
.++|++|+++++.-- +.++. .+..+ ++|++|++++| .++.+ ..+..+++|+.|+++++ .++. ++..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~-----~~~~l----~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~ 83 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEG-----LTDEF----EELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVL 83 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCS-----CCTTC----TTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHH
T ss_pred CccCeEEEccCCcCChhHHHH-----HHhhc----CCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCC-cccchHHHH
Confidence 355666666664322 13332 12333 66666666654 34444 44556666666666653 3443 3221
Q ss_pred Cc-CCCceEEEeccCCCCCccc--cccccCCCCCcceEecccCcccccccC---C--CCCCCccEEeec
Q 043667 308 AL-PSKLKKIEIRKCDALKSLP--EAWMCDTNSSLETLKIERCRSLTYIAG---V--QLPPSLKRLDIW 368 (387)
Q Consensus 308 ~~-~~~L~~L~l~~c~~l~~l~--~~~~~~~~~~L~~L~l~~c~~l~~~~~---~--~~~~~L~~L~l~ 368 (387)
.. .++|++|++++|. ++.++ ..+..+++ |++|++++| .++.++. . ..+++|++|+++
T Consensus 84 ~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~--L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNK-IKDLSTIEPLKKLEN--LKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHCTTCCEEECTTSC-CCSHHHHGGGGGCTT--CCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhhCCCCCEEECCCCc-CCChHHHHHHhhCCC--CCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 11 2566666666543 55443 44444455 666666664 4555443 1 334555555554
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.76 E-value=5.7e-08 Score=80.78 Aligned_cols=121 Identities=18% Similarity=0.177 Sum_probs=89.5
Q ss_pred CcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCc
Q 043667 8 LEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRL 86 (387)
Q Consensus 8 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L 86 (387)
-+.++.+++....+|..+ .++|++|+++++ .++.+|. ++.+++|++|+++++ .+..++... +..+++|
T Consensus 12 ~~~l~~~~~~l~~ip~~~----~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~-----f~~l~~L 80 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGI----PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNN-RISTLSNQS-----FSNMTQL 80 (193)
T ss_dssp TTEEECTTSCCSSCCSCC----CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTT-----TTTCTTC
T ss_pred CCEEEcCCCCCCcCCCCC----CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCC-cCCEeCHhH-----ccCCCCC
Confidence 367888888888888754 468999999985 7777874 788999999999998 666666543 3468999
Q ss_pred ceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCC----CCCCccEEEeccCc
Q 043667 87 ETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPE----HLPALEMLVIEACK 146 (387)
Q Consensus 87 ~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~----~~~~L~~L~l~~~~ 146 (387)
++|++++. .+..... ..+..+++|+.|+++++ .+. .+|. .+++|+.|++.+.+
T Consensus 81 ~~L~Ls~N-~l~~i~~----~~f~~l~~L~~L~L~~N-~l~-~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 81 LTLILSYN-RLRCIPP----RTFDGLKSLRLLSLHGN-DIS-VVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CEEECCSS-CCCBCCT----TTTTTCTTCCEEECCSS-CCC-BCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCC-ccCEeCH----HHhCCCCCCCEEECCCC-CCC-eeChhhhhcCccccEEEeCCCC
Confidence 99999874 3444443 45556899999999887 444 3433 36789999988743
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.73 E-value=1.3e-07 Score=78.52 Aligned_cols=100 Identities=13% Similarity=0.113 Sum_probs=72.3
Q ss_pred CcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC---cCCcCCCcEEEecCCCCceEeCccccCCCcccCCC
Q 043667 8 LEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS---VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFP 84 (387)
Q Consensus 8 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~---~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 84 (387)
-++++++++....+|..+. .+|++|+++++ .++.++. ++.+++|++|+++++ .++.+.... +..++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~----~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-----~~~l~ 78 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP----LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNA-----FEGAS 78 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC----TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTT-----TTTCT
T ss_pred CCEEEcCCCCcCcCccCCC----CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhH-----cCCcc
Confidence 3788999999988887653 48999999986 6777764 788999999999998 666654332 34578
Q ss_pred CcceeeccccCCccccccCcCCCCccCCCCcceEeeccC
Q 043667 85 RLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRC 123 (387)
Q Consensus 85 ~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~ 123 (387)
+|++|++++. .+..... ..+..+++|+.|+++++
T Consensus 79 ~L~~L~Ls~N-~l~~~~~----~~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 79 HIQELQLGEN-KIKEISN----KMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp TCCEEECCSC-CCCEECS----SSSTTCTTCCEEECCSS
T ss_pred cCCEEECCCC-cCCccCH----HHhcCCCCCCEEECCCC
Confidence 8888888863 3444433 33445777777777766
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.70 E-value=1.8e-06 Score=80.26 Aligned_cols=230 Identities=9% Similarity=0.078 Sum_probs=130.3
Q ss_pred CccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCc
Q 043667 32 NLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGV 109 (387)
Q Consensus 32 ~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i 109 (387)
+|+.+.+.+ .++.++. +... +|+.+.+.+ .++.++...| ..+++|+.+++.+. ++..... ..+
T Consensus 136 ~L~~i~l~~--~i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF-----~~c~~L~~l~l~~n-~l~~I~~----~aF 200 (401)
T 4fdw_A 136 QIAKVVLNE--GLKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIF-----YYCYNLKKADLSKT-KITKLPA----STF 200 (401)
T ss_dssp CCSEEECCT--TCCEECTTTTTTC-CCCEEECCT--TCCEECSSTT-----TTCTTCCEEECTTS-CCSEECT----TTT
T ss_pred CccEEEeCC--CccEECHHhcCCC-CceEEEeCC--CccEehHHHh-----hCcccCCeeecCCC-cceEech----hhE
Confidence 577777654 2555553 3342 577777664 4556654432 34677777777641 2222221 222
Q ss_pred cCCCCcceEeeccCcccccccC----CCCCCccEEEeccC-cccc-ccccCCCCcceEEEcCccceeEecccccCCCCcE
Q 043667 110 EGFPKLRELHILRCSKLQGTFP----EHLPALEMLVIEAC-KELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNS 183 (387)
Q Consensus 110 ~~~~~L~~L~l~~~~~l~~~~~----~~~~~L~~L~l~~~-~~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~ 183 (387)
. +.+|+.+.+... +. .++ ..+++|+.+++... ..+. ..+.. .+|+.+.+...-..--...+..+++|+.
T Consensus 201 ~-~~~L~~l~lp~~--l~-~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~ 275 (401)
T 4fdw_A 201 V-YAGIEEVLLPVT--LK-EIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAE 275 (401)
T ss_dssp T-TCCCSEEECCTT--CC-EECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCE
T ss_pred e-ecccCEEEeCCc--hh-eehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCE
Confidence 2 456777766532 22 122 23566777776542 1121 23334 5777777743211111344556777888
Q ss_pred EeccCCCC----cccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhh
Q 043667 184 VVCRDTSN----QVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQL 259 (387)
Q Consensus 184 L~l~~~~~----l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l 259 (387)
+.+.+... ...++...+..+++|+. +.+.. .++.++...|..+.+|+.+.+.. ++..+.... |.
T Consensus 276 l~l~~~~~~~~~~~~I~~~aF~~c~~L~~--l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~a----F~-- 343 (401)
T 4fdw_A 276 VTTYGSTFNDDPEAMIHPYCLEGCPKLAR--FEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSA----FN-- 343 (401)
T ss_dssp EEEESSCCCCCTTCEECTTTTTTCTTCCE--ECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECTTS----SS--
T ss_pred EEeCCccccCCcccEECHHHhhCCccCCe--EEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcHHh----CC--
Confidence 87765321 12344444677778887 77763 47777777788889999999964 466665542 32
Q ss_pred hhccCCccEEEeccCCCCCCccc-ccCCCC-CccEEEecC
Q 043667 260 CELSCRLEYLRLRYCKGLVKLPQ-SSLSLS-SLREIDIYD 297 (387)
Q Consensus 260 ~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~-~L~~L~l~~ 297 (387)
.+ +|+++.+.++. ...++. .+..++ +++.|.+..
T Consensus 344 --~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 344 --NT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp --SS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEECG
T ss_pred --CC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeCH
Confidence 23 89999998753 444443 345553 678888865
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.68 E-value=1.4e-07 Score=78.41 Aligned_cols=120 Identities=13% Similarity=0.192 Sum_probs=86.7
Q ss_pred EEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCc-ccccCCCCC
Q 043667 211 LSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL-PQSSLSLSS 289 (387)
Q Consensus 211 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~ 289 (387)
+.+++. .++.+|..+ .+++++|+++++ .+..+++.. .+..+ ++|++|+++++ .++.+ +..+..+++
T Consensus 13 l~~s~~-~l~~ip~~~---~~~l~~L~l~~n-~i~~~~~~~---~~~~l----~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 79 (192)
T 1w8a_A 13 VDCTGR-GLKEIPRDI---PLHTTELLLNDN-ELGRISSDG---LFGRL----PHLVKLELKRN-QLTGIEPNAFEGASH 79 (192)
T ss_dssp EECTTS-CCSSCCSCC---CTTCSEEECCSC-CCCSBCCSC---SGGGC----TTCCEEECCSS-CCCCBCTTTTTTCTT
T ss_pred EEcCCC-CcCcCccCC---CCCCCEEECCCC-cCCccCCcc---ccccC----CCCCEEECCCC-CCCCcCHhHcCCccc
Confidence 666553 456777653 348999999985 556555421 24555 89999999885 46665 566888999
Q ss_pred ccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCcc-ccccccCCCCCcceEecccC
Q 043667 290 LREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSL-PEAWMCDTNSSLETLKIERC 347 (387)
Q Consensus 290 L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l-~~~~~~~~~~~L~~L~l~~c 347 (387)
|+.|++++ +.++.++...+. ++|++|+++++. ++.+ +..+..+.+ |++|+++++
T Consensus 80 L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~--L~~L~L~~N 136 (192)
T 1w8a_A 80 IQELQLGE-NKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNS--LTSLNLASN 136 (192)
T ss_dssp CCEEECCS-CCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTT--CCEEECTTC
T ss_pred CCEEECCC-CcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCC--CCEEEeCCC
Confidence 99999998 678888765553 899999999854 6655 556666667 999999885
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.67 E-value=7e-08 Score=93.86 Aligned_cols=101 Identities=14% Similarity=0.161 Sum_probs=76.4
Q ss_pred CCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCCCCceEeCccccCCCcccCCC
Q 043667 6 KNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFP 84 (387)
Q Consensus 6 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 84 (387)
..|++|+++++.+..+|. ++. +++|+.|++++| .++.+|. ++.+++|+.|+++++ .++.++ . +..++
T Consensus 441 ~~L~~L~Ls~n~l~~lp~-~~~--l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~------l~~l~ 508 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCH-LEQ--LLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-G------VANLP 508 (567)
T ss_dssp TTCSEEECTTSCCSSCCC-GGG--GTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-G------GTTCS
T ss_pred cCceEEEecCCCCCCCcC-ccc--cccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCCc-c------cCCCC
Confidence 468899999998888887 665 889999999886 6778875 888999999999988 666665 3 35678
Q ss_pred CcceeeccccCCccccc-cCcCCCCccCCCCcceEeeccC
Q 043667 85 RLETLRFDAMLGWEDWI-PLRSGQGVEGFPKLRELHILRC 123 (387)
Q Consensus 85 ~L~~L~l~~~~~l~~~~-~~~~~~~i~~~~~L~~L~l~~~ 123 (387)
+|++|+++++ .+.... + ..+..+++|+.|+++++
T Consensus 509 ~L~~L~Ls~N-~l~~~~~p----~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 509 RLQELLLCNN-RLQQSAAI----QPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp SCCEEECCSS-CCCSSSTT----GGGGGCTTCCEEECTTS
T ss_pred CCcEEECCCC-CCCCCCCc----HHHhcCCCCCEEEecCC
Confidence 8888888874 344432 3 44556788888888876
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.64 E-value=3.6e-07 Score=74.70 Aligned_cols=119 Identities=23% Similarity=0.282 Sum_probs=69.0
Q ss_pred EEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccc-cCCCCC
Q 043667 211 LSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS-SLSLSS 289 (387)
Q Consensus 211 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~ 289 (387)
+...+. .++.+|.. ..++|++|+++++ .+..++.. .+..+ ++|++|+++++ .++.++.. +..+++
T Consensus 12 l~~~~~-~l~~~p~~---~~~~l~~L~l~~n-~l~~~~~~----~~~~l----~~L~~L~l~~n-~l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 12 IRCNSK-GLTSVPTG---IPSSATRLELESN-KLQSLPHG----VFDKL----TQLTKLSLSQN-QIQSLPDGVFDKLTK 77 (177)
T ss_dssp EECCSS-CCSSCCTT---CCTTCSEEECCSS-CCCCCCTT----TTTTC----TTCSEEECCSS-CCCCCCTTTTTTCTT
T ss_pred EEecCC-CCccCCCC---CCCCCcEEEeCCC-cccEeCHH----HhcCc----ccccEEECCCC-cceEeChhHccCCCc
Confidence 444332 34455543 2357777777764 34444432 23444 67777777764 45665543 466777
Q ss_pred ccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCccccc-cccCCCCCcceEecccC
Q 043667 290 LREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPEA-WMCDTNSSLETLKIERC 347 (387)
Q Consensus 290 L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~-~~~~~~~~L~~L~l~~c 347 (387)
|+.|++++ +.++.++...+. ++|++|+++++ .++.++.. +..+++ |++|+++++
T Consensus 78 L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~--L~~L~l~~N 134 (177)
T 2o6r_A 78 LTILYLHE-NKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTS--LQKIWLHTN 134 (177)
T ss_dssp CCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTT--CCEEECCSS
T ss_pred cCEEECCC-CCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcc--cCEEEecCC
Confidence 77777776 456666654332 67777777764 46666543 233455 777777764
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.63 E-value=2.7e-07 Score=75.44 Aligned_cols=122 Identities=16% Similarity=0.208 Sum_probs=89.2
Q ss_pred CCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCC
Q 043667 7 NLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFP 84 (387)
Q Consensus 7 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 84 (387)
..+.++.+++....+|..+ .++|++|+++++ .++.++. ++.+++|++|++.++ .+..++... +..++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~----~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~-----~~~l~ 76 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI----PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGV-----FDKLT 76 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC----CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTT-----TTTCT
T ss_pred CCCEEEecCCCCccCCCCC----CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC-cceEeChhH-----ccCCC
Confidence 4577888888888888543 568999999986 6777775 688999999999988 666666543 24688
Q ss_pred CcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCC----CCCCccEEEeccCc
Q 043667 85 RLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPE----HLPALEMLVIEACK 146 (387)
Q Consensus 85 ~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~----~~~~L~~L~l~~~~ 146 (387)
+|++|++++. .+..... ..+..+++|+.|+++++ .+. .+|. .+++|+.|+++++.
T Consensus 77 ~L~~L~l~~N-~l~~~~~----~~~~~l~~L~~L~l~~N-~l~-~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 77 KLTILYLHEN-KLQSLPN----GVFDKLTQLKELALDTN-QLK-SVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TCCEEECCSS-CCCCCCT----TTTTTCTTCCEEECCSS-CCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEEECCCC-CccccCH----HHhhCCcccCEEECcCC-cce-EeCHHHhcCCcccCEEEecCCC
Confidence 9999999874 3444433 33456889999999887 444 3432 36789999998764
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.58 E-value=6e-08 Score=97.26 Aligned_cols=106 Identities=13% Similarity=0.030 Sum_probs=74.7
Q ss_pred CCCCCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCCCCceEeCccccCCCcc
Q 043667 2 LEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAA 80 (387)
Q Consensus 2 ~~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 80 (387)
+....+|+.|+++++.+..+|..+.. +++|++|+|++| .++.+|. ++.+++|++|+++++ .+..++.. +
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~--l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~------~ 289 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFK--YDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAE------L 289 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGG--CCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSS------G
T ss_pred hccCCCCcEEECCCCCCCCCChhhcC--CCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccChh------h
Confidence 34557788888888888788776665 888888888875 6667775 778888888888888 55566554 3
Q ss_pred cCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccC
Q 043667 81 IPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRC 123 (387)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~ 123 (387)
..+++|++|+++++ .+.... ..+..+++|+.|+++++
T Consensus 290 ~~l~~L~~L~L~~N-~l~~lp-----~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 290 GSCFQLKYFYFFDN-MVTTLP-----WEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp GGGTTCSEEECCSS-CCCCCC-----SSTTSCTTCCCEECTTS
T ss_pred cCCCCCCEEECCCC-CCCccC-----hhhhcCCCccEEeCCCC
Confidence 45788888888865 333332 34556788888888776
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.53 E-value=1.3e-07 Score=94.88 Aligned_cols=148 Identities=16% Similarity=0.120 Sum_probs=72.2
Q ss_pred CCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCc
Q 043667 201 PQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL 280 (387)
Q Consensus 201 ~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~ 280 (387)
..++.|+. |.++++. +..++..+ ..+++|++|+|+++ .+..++. .+..+ ++|+.|+|+++. ++.+
T Consensus 221 ~~l~~L~~--L~Ls~n~-l~~l~~~~-~~l~~L~~L~Ls~N-~l~~lp~-----~~~~l----~~L~~L~Ls~N~-l~~l 285 (727)
T 4b8c_D 221 YDDQLWHA--LDLSNLQ-IFNISANI-FKYDFLTRLYLNGN-SLTELPA-----EIKNL----SNLRVLDLSHNR-LTSL 285 (727)
T ss_dssp -CCCCCCE--EECTTSC-CSCCCGGG-GGCCSCSCCBCTTS-CCSCCCG-----GGGGG----TTCCEEECTTSC-CSSC
T ss_pred ccCCCCcE--EECCCCC-CCCCChhh-cCCCCCCEEEeeCC-cCcccCh-----hhhCC----CCCCEEeCcCCc-CCcc
Confidence 34445555 5555443 33455442 35677777777764 4445543 34555 777777777643 5666
Q ss_pred ccccCCCCCccEEEecCCCCceecCCCC-cCCCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCCCCC
Q 043667 281 PQSSLSLSSLREIDIYDCSSLVSFPEVA-LPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLP 359 (387)
Q Consensus 281 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 359 (387)
|..+..+++|+.|++++ +.++.+|... -.++|++|+++++.--..+|..+..... ....+++.++ .++ +..+
T Consensus 286 p~~~~~l~~L~~L~L~~-N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~-~~~~l~l~~N-~l~----~~~p 358 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFD-NMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV-TGLIFYLRDN-RPE----IPLP 358 (727)
T ss_dssp CSSGGGGTTCSEEECCS-SCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH-HHHHHHHHHC-CCC----CCCC
T ss_pred ChhhcCCCCCCEEECCC-CCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcch-hhhHHhhccC-ccc----CcCc
Confidence 66666777777777776 3566666431 1267777777765422234433221110 0122344442 221 1234
Q ss_pred CCccEEeecCC
Q 043667 360 PSLKRLDIWNC 370 (387)
Q Consensus 360 ~~L~~L~l~~C 370 (387)
..|+.|+++.+
T Consensus 359 ~~l~~l~l~~n 369 (727)
T 4b8c_D 359 HERRFIEINTD 369 (727)
T ss_dssp CC---------
T ss_pred cccceeEeecc
Confidence 56777776654
No 139
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.52 E-value=5e-08 Score=78.79 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=19.0
Q ss_pred cceEecccCcccccccCC--CCCCCccEEeecCCccccc
Q 043667 339 LETLKIERCRSLTYIAGV--QLPPSLKRLDIWNCDNIRT 375 (387)
Q Consensus 339 L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~C~~l~~ 375 (387)
|++|++++|+++++-... ..+++|++|++++|++++.
T Consensus 116 L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 116 MLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 555555555555543222 2345555555555555554
No 140
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.49 E-value=6.9e-05 Score=69.40 Aligned_cols=278 Identities=14% Similarity=0.154 Sum_probs=145.9
Q ss_pred CccEEEeecCCCCCCCCC--cCCcCCCcEEEecCC--CCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCC
Q 043667 32 NLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGM--TSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQ 107 (387)
Q Consensus 32 ~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~--~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 107 (387)
.|+.+.+-. .++.+.. +..+.+|+.+.+... ..++.++...| ..+.+|+.+.+.+ ++..... .
T Consensus 65 ~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF-----~~c~~L~~i~~~~--~~~~I~~----~ 131 (394)
T 4gt6_A 65 VLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAF-----MFCSELTDIPILD--SVTEIDS----E 131 (394)
T ss_dssp CCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTT-----TTCTTCCBCGGGT--TCSEECT----T
T ss_pred cCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhc-----hhcccceeeccCC--ccceehh----h
Confidence 477888854 3666654 677888888888653 34666665543 3356666665542 2222222 2
Q ss_pred CccCCCCcceEeeccCcc-cccccCCCCCCccEEEeccCc-ccc-ccccCCCCcceEEEcCccceeEecccccCCCCcEE
Q 043667 108 GVEGFPKLRELHILRCSK-LQGTFPEHLPALEMLVIEACK-ELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSV 184 (387)
Q Consensus 108 ~i~~~~~L~~L~l~~~~~-l~~~~~~~~~~L~~L~l~~~~-~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L 184 (387)
....+.+|+.+.+..... +.......+..|+.+.+...- .+. ..+ ...+|+.+.+......-.......+.+++..
T Consensus 132 aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF-~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDSVTAIEERAF-TGTALTQIHIPAKVTRIGTNAFSECFALSTI 210 (394)
T ss_dssp TTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTT-TTCCCSEEEECTTCCEECTTTTTTCTTCCEE
T ss_pred hhhhhcccccccccceeeeecccceecccccccccccceeeEeccccc-cccceeEEEECCcccccccchhhhcccccee
Confidence 223466777777753211 111112235666666664321 111 122 2345666666432211112223334444444
Q ss_pred eccCCCCcccccCCC-------------CCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhH
Q 043667 185 VCRDTSNQVFLAGPL-------------KPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEE 251 (387)
Q Consensus 185 ~l~~~~~l~~~~~~~-------------~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~ 251 (387)
....... ....... ......+.. +.+. ..+..+....+..+..|+.+.+.. .+..+...
T Consensus 211 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ip--~~v~~i~~~aF~~c~~L~~i~lp~--~~~~I~~~- 282 (394)
T 4gt6_A 211 TSDSESY-PAIDNVLYEKSANGDYALIRYPSQREDPA--FKIP--NGVARIETHAFDSCAYLASVKMPD--SVVSIGTG- 282 (394)
T ss_dssp EECCSSS-CBSSSCEEEECTTSCEEEEECCTTCCCSE--EECC--TTEEEECTTTTTTCSSCCEEECCT--TCCEECTT-
T ss_pred ccccccc-ccccceeecccccccccccccccccccce--EEcC--CcceEcccceeeecccccEEeccc--ccceecCc-
Confidence 3322100 0000000 001111111 2221 223344444566778888888764 34444443
Q ss_pred HHHHHhhhhhccCCccEEEeccCCCCCCccc-ccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCccc
Q 043667 252 EKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ-SSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLP 328 (387)
Q Consensus 252 ~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~ 328 (387)
++... ++|+.+.+. ..++.++. .+..+.+|+.+++.. +++.++...|. .+|+.+.+-. +++.+.
T Consensus 283 ---aF~~c----~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~ 349 (394)
T 4gt6_A 283 ---AFMNC----PALQDIEFS--SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIP 349 (394)
T ss_dssp ---TTTTC----TTCCEEECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCC
T ss_pred ---ccccc----cccccccCC--CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEh
Confidence 23332 778888875 34666664 366788899988863 57888877776 6888888853 467765
Q ss_pred c-ccccCCCCCcceEeccc
Q 043667 329 E-AWMCDTNSSLETLKIER 346 (387)
Q Consensus 329 ~-~~~~~~~~~L~~L~l~~ 346 (387)
. .+..+.+ |+.+.+.+
T Consensus 350 ~~aF~~C~~--L~~i~~~~ 366 (394)
T 4gt6_A 350 ESAFSNCTA--LNNIEYSG 366 (394)
T ss_dssp GGGGTTCTT--CCEEEESS
T ss_pred HhHhhCCCC--CCEEEECC
Confidence 3 4556677 88888876
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.43 E-value=1.6e-06 Score=70.40 Aligned_cols=101 Identities=15% Similarity=0.122 Sum_probs=73.5
Q ss_pred CCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCC
Q 043667 7 NLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFP 84 (387)
Q Consensus 7 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 84 (387)
..+.++++++....+|..+ .++|++|+++++ .++.+++ ++.+++|++|+++++ .++.++...+ ..++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~----~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f-----~~l~ 78 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI----PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVF-----DKLT 78 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC----CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTT-----TTCT
T ss_pred CCCEEEeCCCCcCccCccC----CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhc-----cCCC
Confidence 4578899999998888755 478999999985 7777754 888999999999998 6777766542 3577
Q ss_pred CcceeeccccCCccccccCcCCCCccCCCCcceEeeccC
Q 043667 85 RLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRC 123 (387)
Q Consensus 85 ~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~ 123 (387)
+|++|++++. .+..... ..+..+++|+.|+++++
T Consensus 79 ~L~~L~L~~N-~l~~~~~----~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 79 QLTQLSLNDN-QLKSIPR----GAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TCCEEECCSS-CCCCCCT----TTTTTCTTCCEEECCSS
T ss_pred CCCEEECCCC-ccCEeCH----HHhcCCCCCCEEEeCCC
Confidence 8888888763 3444332 33445677777777765
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.43 E-value=1.5e-06 Score=70.74 Aligned_cols=101 Identities=18% Similarity=0.253 Sum_probs=71.3
Q ss_pred ccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCc-ccccCCCCCccEEEecCCCCceecCCCCcC-
Q 043667 233 LKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL-PQSSLSLSSLREIDIYDCSSLVSFPEVALP- 310 (387)
Q Consensus 233 L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~- 310 (387)
-+.+++++ ..++.+|.. .+++|++|+++++ .++.+ +..+..+++|+.|++++ +.++.++...+.
T Consensus 14 ~~~l~~~~-n~l~~iP~~-----------~~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~ 79 (174)
T 2r9u_A 14 QTLVNCQN-IRLASVPAG-----------IPTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDK 79 (174)
T ss_dssp SSEEECCS-SCCSSCCSC-----------CCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTT
T ss_pred CcEEEeCC-CCCCccCCC-----------cCCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCC
Confidence 36777776 456666643 1278888888875 46666 44577888888999888 578888765443
Q ss_pred -CCceEEEeccCCCCCccccc-cccCCCCCcceEecccCcccc
Q 043667 311 -SKLKKIEIRKCDALKSLPEA-WMCDTNSSLETLKIERCRSLT 351 (387)
Q Consensus 311 -~~L~~L~l~~c~~l~~l~~~-~~~~~~~~L~~L~l~~c~~l~ 351 (387)
++|++|++++ +.++.++.. +..+.+ |++|+++++ .+.
T Consensus 80 l~~L~~L~L~~-N~l~~l~~~~~~~l~~--L~~L~L~~N-~~~ 118 (174)
T 2r9u_A 80 LTQLTQLDLND-NHLKSIPRGAFDNLKS--LTHIYLYNN-PWD 118 (174)
T ss_dssp CTTCCEEECCS-SCCCCCCTTTTTTCTT--CSEEECCSS-CBC
T ss_pred cchhhEEECCC-CccceeCHHHhccccC--CCEEEeCCC-Ccc
Confidence 7888888887 457777754 555666 888888884 444
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.41 E-value=1.8e-06 Score=70.32 Aligned_cols=100 Identities=11% Similarity=0.107 Sum_probs=71.6
Q ss_pred CcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCC
Q 043667 8 LEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPR 85 (387)
Q Consensus 8 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 85 (387)
-+.++++++....+|..+ .++|++|+++++ .++.+++ ++.+++|++|+++++ .++.++...+ ..+++
T Consensus 14 ~~~l~~~~n~l~~iP~~~----~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~-----~~l~~ 82 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI----PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVF-----DKLTQ 82 (174)
T ss_dssp SSEEECCSSCCSSCCSCC----CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT-----TTCTT
T ss_pred CcEEEeCCCCCCccCCCc----CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccChhHh-----CCcch
Confidence 467888888888888755 368999999985 6777754 788999999999998 7777765532 35778
Q ss_pred cceeeccccCCccccccCcCCCCccCCCCcceEeeccC
Q 043667 86 LETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRC 123 (387)
Q Consensus 86 L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~ 123 (387)
|++|++++. .+..... ..+..+++|+.|+++++
T Consensus 83 L~~L~L~~N-~l~~l~~----~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 83 LTQLDLNDN-HLKSIPR----GAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCEEECCSS-CCCCCCT----TTTTTCTTCSEEECCSS
T ss_pred hhEEECCCC-ccceeCH----HHhccccCCCEEEeCCC
Confidence 888888763 3433332 33445677777777665
No 144
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.40 E-value=3.2e-07 Score=74.05 Aligned_cols=86 Identities=9% Similarity=0.141 Sum_probs=50.9
Q ss_pred EEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhh---ccCCccEEEeccCCCCCCcc-cccCC
Q 043667 211 LSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCE---LSCRLEYLRLRYCKGLVKLP-QSSLS 286 (387)
Q Consensus 211 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~---~~~~L~~L~l~~c~~l~~~~-~~~~~ 286 (387)
+++++|. ++......+..+++|++|++++|..+++.. +..+.. .+++|++|++++|+++++-- ..+..
T Consensus 66 LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g-------L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 66 IDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGC-------LERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp EEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHH-------HHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred EeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHH-------HHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 6666655 443333334567778888888777776542 222221 12467777777777776521 12445
Q ss_pred CCCccEEEecCCCCceec
Q 043667 287 LSSLREIDIYDCSSLVSF 304 (387)
Q Consensus 287 ~~~L~~L~l~~c~~l~~~ 304 (387)
+++|+.|++++|+.+++.
T Consensus 138 ~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp CTTCCEEEEESCTTCCCH
T ss_pred CCCCCEEECCCCCCCCch
Confidence 677777777777776653
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.36 E-value=2.5e-06 Score=69.14 Aligned_cols=99 Identities=19% Similarity=0.245 Sum_probs=70.8
Q ss_pred CccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCc-ccccCCCCCccEEEecCCCCceecCCCCcC
Q 043667 232 SLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL-PQSSLSLSSLREIDIYDCSSLVSFPEVALP 310 (387)
Q Consensus 232 ~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 310 (387)
+.+.+++++ ..+..+|.. .+++|++|+++++ .++.+ +..+..+++|+.|++++ +.++.++...+.
T Consensus 10 ~~~~l~~s~-n~l~~ip~~-----------~~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~ 75 (170)
T 3g39_A 10 SGTTVDCSG-KSLASVPTG-----------IPTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFD 75 (170)
T ss_dssp ETTEEECTT-SCCSSCCSC-----------CCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTT
T ss_pred CCCEEEeCC-CCcCccCcc-----------CCCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCC-CCcCccChhhcc
Confidence 467888887 456666643 1278888888874 46666 44577888888888887 578887765543
Q ss_pred --CCceEEEeccCCCCCccccc-cccCCCCCcceEecccC
Q 043667 311 --SKLKKIEIRKCDALKSLPEA-WMCDTNSSLETLKIERC 347 (387)
Q Consensus 311 --~~L~~L~l~~c~~l~~l~~~-~~~~~~~~L~~L~l~~c 347 (387)
++|++|+++++ .++.++.. +..+.+ |++|++++.
T Consensus 76 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~--L~~L~L~~N 112 (170)
T 3g39_A 76 KLTQLTQLSLNDN-QLKSIPRGAFDNLKS--LTHIWLLNN 112 (170)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTT--CCEEECCSS
T ss_pred CCCCCCEEECCCC-ccCEeCHHHhcCCCC--CCEEEeCCC
Confidence 78888888874 57777653 555666 888888884
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.35 E-value=0.00036 Score=64.48 Aligned_cols=293 Identities=13% Similarity=0.145 Sum_probs=164.6
Q ss_pred cCCcC-CCcEEEecCCCCceEeCccccCCCcccCCCCcceeecccc--CCccccccCcCCCCccCCCCcceEeeccCc-c
Q 043667 50 VGQLP-SLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAM--LGWEDWIPLRSGQGVEGFPKLRELHILRCS-K 125 (387)
Q Consensus 50 ~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~-~ 125 (387)
+..+. .|+.+.+.. .++.++...| ..+.+|+.+.+.+. ..++.... .....+.+|+.+.+.... .
T Consensus 59 F~~~~~~L~sI~iP~--svt~Ig~~AF-----~~C~~L~~i~~~~n~p~~l~~Ig~----~aF~~c~~L~~i~~~~~~~~ 127 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPD--TVTEIGSNAF-----YNCTSLKRVTIQDNKPSCVKKIGR----QAFMFCSELTDIPILDSVTE 127 (394)
T ss_dssp TTTCCSCCCEEEECT--TCCEECTTTT-----TTCTTCCEEEEGGGCCCCCCEECT----TTTTTCTTCCBCGGGTTCSE
T ss_pred ccCCCCcCEEEEECC--CeeEEhHHHh-----hCCccCceEeecCCCCCeeeEech----hhchhcccceeeccCCccce
Confidence 44553 588888864 4777776543 45899999998753 23444332 334457788877664321 1
Q ss_pred cccccCCCCCCccEEEeccCc-ccc-ccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCC
Q 043667 126 LQGTFPEHLPALEMLVIEACK-ELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQL 203 (387)
Q Consensus 126 l~~~~~~~~~~L~~L~l~~~~-~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l 203 (387)
+.......+.+|+.+.+...- .+. ..+..+.+|+.+.+.+.- ..+....-...+|+.+.+-. .+..+.......+
T Consensus 128 I~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~~-~~I~~~aF~~~~l~~i~ip~--~~~~i~~~af~~c 204 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDSV-TAIEERAFTGTALTQIHIPA--KVTRIGTNAFSEC 204 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCCCSEEEECT--TCCEECTTTTTTC
T ss_pred ehhhhhhhhcccccccccceeeeecccceeccccccccccccee-eEeccccccccceeEEEECC--cccccccchhhhc
Confidence 111222347889999886432 222 456778899988886431 11222222235677777653 2233333334445
Q ss_pred ccccceeEEEcCCCCcccccccccc-------------cCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEE
Q 043667 204 PKLEELILSTKEQTYIWKSHDGLLQ-------------DICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLR 270 (387)
Q Consensus 204 ~~L~~l~L~l~~~~~~~~~~~~~l~-------------~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~ 270 (387)
..+.. +...... ........+. ....+..+.+. ..+..+... +|.. +.+|+++.
T Consensus 205 ~~l~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip--~~v~~i~~~----aF~~----c~~L~~i~ 271 (394)
T 4gt6_A 205 FALST--ITSDSES-YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP--NGVARIETH----AFDS----CAYLASVK 271 (394)
T ss_dssp TTCCE--EEECCSS-SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC--TTEEEECTT----TTTT----CSSCCEEE
T ss_pred cccce--ecccccc-cccccceeecccccccccccccccccccceEEcC--CcceEcccc----eeee----cccccEEe
Confidence 55554 4333211 1111111010 11233344432 234444332 2332 27788888
Q ss_pred eccCCCCCCccc-ccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCcccc-ccccCCCCCcceEeccc
Q 043667 271 LRYCKGLVKLPQ-SSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPE-AWMCDTNSSLETLKIER 346 (387)
Q Consensus 271 l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~-~~~~~~~~~L~~L~l~~ 346 (387)
+.+ .++.+.. .+..+++|+.+.+. ..++.++...|. .+|+.+++.. +++.+.. .+..+.+ |+++.+-.
T Consensus 272 lp~--~~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~--L~~i~ip~ 343 (394)
T 4gt6_A 272 MPD--SVVSIGTGAFMNCPALQDIEFS--SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQ--LERIAIPS 343 (394)
T ss_dssp CCT--TCCEECTTTTTTCTTCCEEECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTT--CCEEEECT
T ss_pred ccc--ccceecCcccccccccccccCC--CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCC--CCEEEECc
Confidence 754 2344443 36688999999996 578899988877 7999999964 4777764 5566777 99999954
Q ss_pred CcccccccCC--CCCCCccEEeec----------CCccccccccc
Q 043667 347 CRSLTYIAGV--QLPPSLKRLDIW----------NCDNIRTLTVE 379 (387)
Q Consensus 347 c~~l~~~~~~--~~~~~L~~L~l~----------~C~~l~~l~~~ 379 (387)
.++.++.. ....+|+.+++. +|..|++++..
T Consensus 344 --sv~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 344 --SVTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVA 386 (394)
T ss_dssp --TCCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC------
T ss_pred --ccCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeC
Confidence 47776655 456788888875 45566665543
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.22 E-value=1.1e-07 Score=79.31 Aligned_cols=123 Identities=15% Similarity=0.130 Sum_probs=77.7
Q ss_pred EEEcCC-CCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCC
Q 043667 211 LSTKEQ-TYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSS 289 (387)
Q Consensus 211 L~l~~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 289 (387)
..+... +.++.++.. ++.+++|++|+++++ .+..++ .+..+ ++|++|++++| .++.+|..+..+++
T Consensus 28 ~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n-~l~~l~------~~~~l----~~L~~L~l~~n-~l~~l~~~~~~~~~ 94 (198)
T 1ds9_A 28 VELHGMIPPIEKMDAT-LSTLKACKHLALSTN-NIEKIS------SLSGM----ENLRILSLGRN-LIKKIENLDAVADT 94 (198)
T ss_dssp EECCBCCTTCCCCHHH-HHHTTTCSEEECSEE-EESCCC------CHHHH----TTCCEEEEEEE-EECSCSSHHHHHHH
T ss_pred eEeccccCcHhhhhHH-HhcCCCCCEEECCCC-CCcccc------ccccC----CCCCEEECCCC-CcccccchhhcCCc
Confidence 444432 234444443 567788888888774 455544 24455 88888888875 46677766666678
Q ss_pred ccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCcccc--ccccCCCCCcceEecccCcccc
Q 043667 290 LREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPE--AWMCDTNSSLETLKIERCRSLT 351 (387)
Q Consensus 290 L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~~~~~~L~~L~l~~c~~l~ 351 (387)
|+.|+++++ .++.++.....++|++|+++++. ++.++. .+..+++ |++|+++++ .++
T Consensus 95 L~~L~L~~N-~l~~l~~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~--L~~L~l~~N-~l~ 153 (198)
T 1ds9_A 95 LEELWISYN-QIASLSGIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDK--LEDLLLAGN-PLY 153 (198)
T ss_dssp CSEEEEEEE-ECCCHHHHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTT--CSEEEECSC-HHH
T ss_pred CCEEECcCC-cCCcCCccccCCCCCEEECCCCc-CCchhHHHHHhcCCC--CCEEEecCC-ccc
Confidence 888888874 66666522222778888888743 666543 4445566 888888885 443
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.19 E-value=3.9e-08 Score=82.17 Aligned_cols=99 Identities=16% Similarity=0.092 Sum_probs=45.1
Q ss_pred CCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcC-CCceEEEeccCCCCCccccccccCCCCCcceE
Q 043667 264 CRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALP-SKLKKIEIRKCDALKSLPEAWMCDTNSSLETL 342 (387)
Q Consensus 264 ~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L 342 (387)
++|++|+++++ .++.++ .+..+++|+.|+++++ .++.++..... ++|++|++++| .++.++ .+..+++ |++|
T Consensus 48 ~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~--L~~L 120 (198)
T 1ds9_A 48 KACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVN--LRVL 120 (198)
T ss_dssp TTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHH--SSEE
T ss_pred CCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCC--CCEE
Confidence 55555555543 244444 4444555555555542 34444321111 45555555553 344444 2333334 5555
Q ss_pred ecccCcccccccC--C-CCCCCccEEeecCC
Q 043667 343 KIERCRSLTYIAG--V-QLPPSLKRLDIWNC 370 (387)
Q Consensus 343 ~l~~c~~l~~~~~--~-~~~~~L~~L~l~~C 370 (387)
+++++ .++.++. . ..+++|++|+++++
T Consensus 121 ~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 121 YMSNN-KITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp EESEE-ECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred ECCCC-cCCchhHHHHHhcCCCCCEEEecCC
Confidence 55553 4444332 1 33455555555554
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.15 E-value=0.00073 Score=61.99 Aligned_cols=284 Identities=12% Similarity=0.109 Sum_probs=156.8
Q ss_pred CCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCC
Q 043667 30 FSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQ 107 (387)
Q Consensus 30 l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 107 (387)
..+|+.+.+.. .++.++. +..+.+|+.+.+.. .++.++...|.. + +|+.+.+- .+++.... .
T Consensus 45 ~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~-----c-~l~~i~~~--~~l~~I~~----~ 108 (379)
T 4h09_A 45 RDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFAD-----T-KLQSYTGM--ERVKKFGD----Y 108 (379)
T ss_dssp GGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTT-----C-CCCEEEEC--TTCCEECT----T
T ss_pred ccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcC-----C-CCceEECC--ceeeEecc----c
Confidence 56899999864 5677765 78899999999964 477787665442 2 45555543 22222221 2
Q ss_pred CccCCCCcceEeeccCcccccccCCCCCCccEEEeccCc-ccc-ccccCCCCcceEEEcCccceeEe-------------
Q 043667 108 GVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACK-ELS-VSVSSLPALCKLKIGGCKKVVWR------------- 172 (387)
Q Consensus 108 ~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~-~l~-~~~~~~~~L~~L~i~~~~~~~~~------------- 172 (387)
... ..+|+.+.+.......+...-.-.+++.+.+...- .+. ..+..+.+++.+.+.........
T Consensus 109 aF~-~~~L~~i~lp~~~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (379)
T 4h09_A 109 VFQ-GTDLDDFEFPGATTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTIL 187 (379)
T ss_dssp TTT-TCCCSEEECCTTCCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEE
T ss_pred eec-cCCcccccCCCccccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceeccccccee
Confidence 222 23677777754311111111011245555443321 111 34556667777766543322211
Q ss_pred cccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHH
Q 043667 173 SATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEE 252 (387)
Q Consensus 173 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~ 252 (387)
........+..+.+.. ...............|+. +.+.. .+..+....+..+..|+.+.+.. .+..+...
T Consensus 188 ~~~~~~~~~~~~~~~~--~~~~i~~~~f~~~~~l~~--i~~~~--~~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~~-- 257 (379)
T 4h09_A 188 ESYPAAKTGTEFTIPS--TVKTVTAYGFSYGKNLKK--ITITS--GVTTLGDGAFYGMKALDEIAIPK--NVTSIGSF-- 257 (379)
T ss_dssp EECCTTCCCSEEECCT--TCCEECTTTTTTCSSCSE--EECCT--TCCEECTTTTTTCSSCCEEEECT--TCCEECTT--
T ss_pred cccccccccccccccc--ceeEEeecccccccccce--eeecc--ceeEEccccccCCccceEEEcCC--CccEeCcc--
Confidence 1111122333333322 112222222344556665 66543 34455555566788899988864 46666544
Q ss_pred HHHHhhhhhccCCccEEEeccCCCCCCccc-ccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCcccc
Q 043667 253 KDQQQQLCELSCRLEYLRLRYCKGLVKLPQ-SSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPE 329 (387)
Q Consensus 253 ~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~ 329 (387)
++... .+|+.+.+.. .++.++. .+..+++|+.+.+.+ ..++.++...|. .+|+.+.+.. +++.+..
T Consensus 258 --aF~~~----~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~ 326 (379)
T 4h09_A 258 --LLQNC----TALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPT--ALKTIQV 326 (379)
T ss_dssp --TTTTC----TTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECT
T ss_pred --cccee----ehhccccccc--cceeccccccccccccccccccc-cccceehhhhhcCCCCCCEEEcCc--cccEEHH
Confidence 23333 7888888853 3565654 366888999999975 468888877776 6888888853 4676654
Q ss_pred -ccccCCCCCcceEecccCcccccccC
Q 043667 330 -AWMCDTNSSLETLKIERCRSLTYIAG 355 (387)
Q Consensus 330 -~~~~~~~~~L~~L~l~~c~~l~~~~~ 355 (387)
.+..+.+ |+.+.+-. +++.+..
T Consensus 327 ~aF~~C~~--L~~i~ip~--~v~~I~~ 349 (379)
T 4h09_A 327 YAFKNCKA--LSTISYPK--SITLIES 349 (379)
T ss_dssp TTTTTCTT--CCCCCCCT--TCCEECT
T ss_pred HHhhCCCC--CCEEEECC--ccCEEch
Confidence 4455566 77776643 3555543
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.05 E-value=0.003 Score=57.87 Aligned_cols=277 Identities=11% Similarity=0.118 Sum_probs=150.4
Q ss_pred cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccc
Q 043667 50 VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGT 129 (387)
Q Consensus 50 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~ 129 (387)
.....+|+.+.+. .+++.|+...| ..+.+|+.+.+.. .++.... .....+ +|+.+.+... +. .
T Consensus 42 ~~~~~~i~~v~ip--~~vt~Ig~~aF-----~~C~~L~~I~lp~--~v~~Ig~----~aF~~c-~l~~i~~~~~--l~-~ 104 (379)
T 4h09_A 42 YKDRDRISEVRVN--SGITSIGEANF-----NSCYNMTKVTVAS--TVTSIGD----GAFADT-KLQSYTGMER--VK-K 104 (379)
T ss_dssp GGGGGGCSEEEEC--TTEEEECTTTT-----TTCTTCCEEEECT--TCCEECT----TTTTTC-CCCEEEECTT--CC-E
T ss_pred cccccCCEEEEeC--CCccChHHHHh-----hCCCCCCEEEeCC--cceEech----hhhcCC-CCceEECCce--ee-E
Confidence 4456789999886 36888877653 4589999999863 2333322 333334 5666666432 22 1
Q ss_pred cCC---CCCCccEEEeccCc-ccc-ccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCC-----
Q 043667 130 FPE---HLPALEMLVIEACK-ELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPL----- 199 (387)
Q Consensus 130 ~~~---~~~~L~~L~l~~~~-~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----- 199 (387)
+.. ...+|+.+++...- .+. ..+.. .+++.+.+...-..-.......+.+++.+.+.............
T Consensus 105 I~~~aF~~~~L~~i~lp~~~~~i~~~~F~~-~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 183 (379)
T 4h09_A 105 FGDYVFQGTDLDDFEFPGATTEIGNYIFYN-SSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKN 183 (379)
T ss_dssp ECTTTTTTCCCSEEECCTTCCEECTTTTTT-CCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETT
T ss_pred eccceeccCCcccccCCCcccccccccccc-ceeeeeeccceeeccccchhcccccccccccccccceeecccceecccc
Confidence 211 12478888886532 121 22333 35666655432111112233445666666655432211100000
Q ss_pred ------CCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEecc
Q 043667 200 ------KPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRY 273 (387)
Q Consensus 200 ------~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 273 (387)
......+.. +.+.. ....+....+..+.+|+.+.+.. .+..+... ++.. +..|+++.+-.
T Consensus 184 ~~~~~~~~~~~~~~~--~~~~~--~~~~i~~~~f~~~~~l~~i~~~~--~~~~i~~~----~f~~----~~~L~~i~lp~ 249 (379)
T 4h09_A 184 KTILESYPAAKTGTE--FTIPS--TVKTVTAYGFSYGKNLKKITITS--GVTTLGDG----AFYG----MKALDEIAIPK 249 (379)
T ss_dssp SSEEEECCTTCCCSE--EECCT--TCCEECTTTTTTCSSCSEEECCT--TCCEECTT----TTTT----CSSCCEEEECT
T ss_pred cceeccccccccccc--ccccc--ceeEEeecccccccccceeeecc--ceeEEccc----cccC----CccceEEEcCC
Confidence 112222222 33222 12222233344567788888764 45555443 2332 27888888854
Q ss_pred CCCCCCccc-ccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCcccc-ccccCCCCCcceEecccCcc
Q 043667 274 CKGLVKLPQ-SSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPE-AWMCDTNSSLETLKIERCRS 349 (387)
Q Consensus 274 c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~-~~~~~~~~~L~~L~l~~c~~ 349 (387)
.++.+.. .+..+.+|+.+.+. .+++.++...+. .+|+.+.+.+ ..++.+.. .+..+.+ |+.+.+.. +
T Consensus 250 --~v~~I~~~aF~~~~~l~~i~l~--~~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~--L~~i~lp~--~ 320 (379)
T 4h09_A 250 --NVTSIGSFLLQNCTALKTLNFY--AKVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVK--LSSVTLPT--A 320 (379)
T ss_dssp --TCCEECTTTTTTCTTCCEEEEC--CCCSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTT--CCEEECCT--T
T ss_pred --CccEeCccccceeehhcccccc--ccceeccccccccccccccccccc-cccceehhhhhcCCCC--CCEEEcCc--c
Confidence 3566554 35678899999996 467888877766 7899999975 34777764 4555677 88888854 3
Q ss_pred cccccCC--CCCCCccEEee
Q 043667 350 LTYIAGV--QLPPSLKRLDI 367 (387)
Q Consensus 350 l~~~~~~--~~~~~L~~L~l 367 (387)
++.++.. ....+|+.+++
T Consensus 321 l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 321 LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CCEECTTTTTTCTTCCCCCC
T ss_pred ccEEHHHHhhCCCCCCEEEE
Confidence 5555543 22344444443
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.03 E-value=2.1e-05 Score=71.51 Aligned_cols=79 Identities=23% Similarity=0.231 Sum_probs=45.5
Q ss_pred CCccEEEeccCCCCCCccc-ccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCccccccccCCCCCcc
Q 043667 264 CRLEYLRLRYCKGLVKLPQ-SSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPEAWMCDTNSSLE 340 (387)
Q Consensus 264 ~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~ 340 (387)
.+|++|+|++++.++.++. .+..+++|+.|++++ +.++.++...+. ++|+.|++++ +.+..+|........ |+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~--L~ 106 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQGLS--LQ 106 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTCSCC--CC
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeCCC-CccceeCHHHcccCC--ce
Confidence 5566666665345555553 455666666666666 356666544332 6666666665 346666554333333 66
Q ss_pred eEeccc
Q 043667 341 TLKIER 346 (387)
Q Consensus 341 ~L~l~~ 346 (387)
.|++.+
T Consensus 107 ~l~l~~ 112 (347)
T 2ifg_A 107 ELVLSG 112 (347)
T ss_dssp EEECCS
T ss_pred EEEeeC
Confidence 666666
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.00 E-value=1.1e-05 Score=73.68 Aligned_cols=63 Identities=17% Similarity=0.086 Sum_probs=33.0
Q ss_pred cCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCC-----cccccCCCCCccEEEecCC
Q 043667 229 DICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK-----LPQSSLSLSSLREIDIYDC 298 (387)
Q Consensus 229 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~~L~~L~l~~c 298 (387)
.+|+|++|.+.+|......... .... ..+++|++|+++.+ .+++ ++..+..+++|+.|++++|
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~----la~a--~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEM----FLES--DILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHH----HHHC--SSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCCCCchHHHHH----HHhC--ccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC
Confidence 4677777777765433221111 0110 02367777777653 3443 3333445677777777764
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.99 E-value=2.9e-05 Score=70.49 Aligned_cols=100 Identities=18% Similarity=0.153 Sum_probs=71.1
Q ss_pred cEEEEcCc-CCCCCCCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCC
Q 043667 9 EQFCISGY-RGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPR 85 (387)
Q Consensus 9 ~~L~l~~~-~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 85 (387)
..++.++. ....+|. +.. +++|+.|+|++++.++.++. ++.+++|++|+++++ .+..++... +..+++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~--~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~-----~~~l~~ 81 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPG--AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDA-----FHFTPR 81 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCS--CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTG-----GGSCSC
T ss_pred CEEEcCCCCCCCccCC-CCC--CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHH-----hcCCcC
Confidence 35677776 7788888 776 88999999986457888875 888999999999998 677776654 245788
Q ss_pred cceeeccccCCccccccCcCCCCccCCCCcceEeeccC
Q 043667 86 LETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRC 123 (387)
Q Consensus 86 L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~ 123 (387)
|++|++++. .+..... ..+..++ |+.|++.++
T Consensus 82 L~~L~l~~N-~l~~~~~----~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 82 LSRLNLSFN-ALESLSW----KTVQGLS-LQELVLSGN 113 (347)
T ss_dssp CCEEECCSS-CCSCCCS----TTTCSCC-CCEEECCSS
T ss_pred CCEEeCCCC-ccceeCH----HHcccCC-ceEEEeeCC
Confidence 888888863 3444332 2222233 778887765
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.89 E-value=9.5e-06 Score=74.07 Aligned_cols=61 Identities=20% Similarity=0.113 Sum_probs=37.2
Q ss_pred cCCccEEEeccCCCCCCcccc---cCCCCCccEEEecCCCCceec-----CCC-CcCCCceEEEeccCCCCC
Q 043667 263 SCRLEYLRLRYCKGLVKLPQS---SLSLSSLREIDIYDCSSLVSF-----PEV-ALPSKLKKIEIRKCDALK 325 (387)
Q Consensus 263 ~~~L~~L~l~~c~~l~~~~~~---~~~~~~L~~L~l~~c~~l~~~-----~~~-~~~~~L~~L~l~~c~~l~ 325 (387)
+|+|+.|++.+|......... ...+++|+.|+++. +.++.. ... ...++|+.|++++|. +.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY-LS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc-CC
Confidence 488999999876522111111 13578899999976 456552 221 112789999998764 44
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.84 E-value=1.6e-06 Score=79.72 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=6.0
Q ss_pred CCccEEEeccCc
Q 043667 135 PALEMLVIEACK 146 (387)
Q Consensus 135 ~~L~~L~l~~~~ 146 (387)
+.|+.|++++|.
T Consensus 72 ~~L~~L~Ls~n~ 83 (372)
T 3un9_A 72 SSLRQLNLAGVR 83 (372)
T ss_dssp TTCCEEECTTSC
T ss_pred hhCCEEEecCCC
Confidence 445555555543
No 156
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.80 E-value=2.4e-06 Score=78.51 Aligned_cols=83 Identities=18% Similarity=0.171 Sum_probs=39.3
Q ss_pred CCccEEEeccCCCCCC-----cccccCCCCCccEEEecCCCCceecCCC------CcCCCceEEEeccCCCCCc-----c
Q 043667 264 CRLEYLRLRYCKGLVK-----LPQSSLSLSSLREIDIYDCSSLVSFPEV------ALPSKLKKIEIRKCDALKS-----L 327 (387)
Q Consensus 264 ~~L~~L~l~~c~~l~~-----~~~~~~~~~~L~~L~l~~c~~l~~~~~~------~~~~~L~~L~l~~c~~l~~-----l 327 (387)
++|++|++++|. +++ +...+...++|+.|++++| .+++.... ...++|++|++++|. +++ +
T Consensus 155 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l 231 (372)
T 3un9_A 155 CQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALAL 231 (372)
T ss_dssp CCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHH
T ss_pred CccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHH
Confidence 556666666653 332 2223345556666666653 34432100 111456666666643 432 2
Q ss_pred ccccccCCCCCcceEecccCccccc
Q 043667 328 PEAWMCDTNSSLETLKIERCRSLTY 352 (387)
Q Consensus 328 ~~~~~~~~~~~L~~L~l~~c~~l~~ 352 (387)
+..+...+. |++|++++| .+++
T Consensus 232 ~~~L~~~~~--L~~L~Ls~N-~i~~ 253 (372)
T 3un9_A 232 ARAAREHPS--LELLHLYFN-ELSS 253 (372)
T ss_dssp HHHHHHCSS--CCEEECTTS-SCCH
T ss_pred HHHHHhCCC--CCEEeccCC-CCCH
Confidence 222223344 666666664 4443
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.29 E-value=6.2e-05 Score=61.77 Aligned_cols=66 Identities=5% Similarity=0.027 Sum_probs=32.6
Q ss_pred cccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCC-----cccccCCCCCccEEEecC
Q 043667 227 LQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK-----LPQSSLSLSSLREIDIYD 297 (387)
Q Consensus 227 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~~L~~L~l~~ 297 (387)
+...++|++|++++|..+.+.....+...+... ++|++|++++|. +.+ +...+...++|+.|++++
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~----~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN----TYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC----CSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhC----CCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcC
Confidence 345566777777765344443222222222222 566677766653 332 222233445566666665
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.66 E-value=0.00096 Score=54.51 Aligned_cols=88 Identities=20% Similarity=0.106 Sum_probs=51.2
Q ss_pred cccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCC-----cccccCCCCCccEEEe--cCCC
Q 043667 227 LQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK-----LPQSSLSLSSLREIDI--YDCS 299 (387)
Q Consensus 227 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~~L~~L~l--~~c~ 299 (387)
+...++|++|+++++ .+.+.....+...+... ++|++|++++|. +++ +...+...++|+.|++ ++ +
T Consensus 61 L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n----~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N 133 (185)
T 1io0_A 61 LKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVN----NTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQS-Q 133 (185)
T ss_dssp HTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHC----SSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCS-S
T ss_pred HHhCCCcCEEECcCC-CCChHHHHHHHHHHHhC----CCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCC-C
Confidence 445688999999986 45543332223334433 789999998864 543 3445566677888888 44 4
Q ss_pred CceecCCCCc------CCCceEEEeccC
Q 043667 300 SLVSFPEVAL------PSKLKKIEIRKC 321 (387)
Q Consensus 300 ~l~~~~~~~~------~~~L~~L~l~~c 321 (387)
.++.-....+ .++|++|++++|
T Consensus 134 ~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 134 PLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 4443221111 155666666554
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.56 E-value=0.00052 Score=59.47 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=17.6
Q ss_pred CCCccEEEeecCCCCCCCCC----cCCcCCCcEEEecCC
Q 043667 30 FSNLVTLKFEYCGMCPTLPS----VGQLPSLKHLAVCGM 64 (387)
Q Consensus 30 l~~L~~L~l~~c~~~~~l~~----~~~l~~L~~L~l~~~ 64 (387)
+++|++|+++++ .+..++. ++.+++|+.|+++++
T Consensus 169 l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 169 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp CTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred CCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC
Confidence 555566666553 4444332 224555666666555
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.43 E-value=0.015 Score=50.16 Aligned_cols=58 Identities=19% Similarity=0.135 Sum_probs=33.5
Q ss_pred cCCccEEEeccCCCCCCcc---cccCCCCCccEEEecCCCCceecCCCCcCC--CceEEEeccCC
Q 043667 263 SCRLEYLRLRYCKGLVKLP---QSSLSLSSLREIDIYDCSSLVSFPEVALPS--KLKKIEIRKCD 322 (387)
Q Consensus 263 ~~~L~~L~l~~c~~l~~~~---~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~--~L~~L~l~~c~ 322 (387)
+++|++|+++++ .++.++ ..+..+++|+.|++++ +.++.+....... +|++|++.+++
T Consensus 169 l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 169 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp CTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTSCCSEEECTTST
T ss_pred CCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccCCcceEEccCCc
Confidence 377888888774 355443 3344677777777776 5555543221112 56666666654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.96 E-value=0.023 Score=46.44 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=55.9
Q ss_pred ccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCC-----cccccCCCCCccEEEecCCCCce
Q 043667 228 QDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK-----LPQSSLSLSSLREIDIYDCSSLV 302 (387)
Q Consensus 228 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~~L~~L~l~~c~~l~ 302 (387)
..-++|++|+++++..+.+-....+..++..- ..|++|++++|. +.+ +...+..-+.|+.|++++ +.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N----~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~-N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNS----KHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVES-NFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC----SCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCS-SBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhC----CCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCC-CcCC
Confidence 34567888888764444443222222233322 677777777654 332 233344456677777776 4554
Q ss_pred ecCCC------CcCCCceEEEeccCCC--CCc-----cccccccCCCCCcceEeccc
Q 043667 303 SFPEV------ALPSKLKKIEIRKCDA--LKS-----LPEAWMCDTNSSLETLKIER 346 (387)
Q Consensus 303 ~~~~~------~~~~~L~~L~l~~c~~--l~~-----l~~~~~~~~~~~L~~L~l~~ 346 (387)
.-... .....|++|+++++.. +.. +.+.+..-+. |++|+++.
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~t--L~~L~l~~ 166 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENES--LLRVGISF 166 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSS--CCEEECCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCC--cCeEeccC
Confidence 32211 1125577777765422 221 3333333334 77776654
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=89.94 E-value=0.58 Score=35.25 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=33.9
Q ss_pred EEEEcCcCCC--CCCCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCC
Q 043667 10 QFCISGYRGA--KFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMT 65 (387)
Q Consensus 10 ~L~l~~~~~~--~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~ 65 (387)
.++-++.... .+|..+ -++|+.|+|+++ .++.+|. +..+++|+.|++.+++
T Consensus 12 ~v~Cs~~~L~~~~vP~~l----p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF----PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC----CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC----CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 4445555555 667543 236888888874 7777775 6677788888887764
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=89.84 E-value=0.48 Score=35.75 Aligned_cols=51 Identities=22% Similarity=0.306 Sum_probs=35.9
Q ss_pred EEEecCCCCce--ecCCCCcCCCceEEEeccCCCCCccccc-cccCCCCCcceEecccC
Q 043667 292 EIDIYDCSSLV--SFPEVALPSKLKKIEIRKCDALKSLPEA-WMCDTNSSLETLKIERC 347 (387)
Q Consensus 292 ~L~l~~c~~l~--~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~~~L~~L~l~~c 347 (387)
.++-++ .+++ .+|. .++++|++|++++ +.++.++.. +..... |++|++.+.
T Consensus 12 ~v~Cs~-~~L~~~~vP~-~lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~--L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPT-AFPVDTTELVLTG-NNLTALPPGLLDALPA--LRTAHLGAN 65 (130)
T ss_dssp EEECCS-SCCCTTTSCS-CCCTTCSEEECTT-SCCSSCCTTTGGGCTT--CCEEECCSS
T ss_pred EEEeCC-CCCccccCCC-CCCcCCCEEECCC-CcCCccChhhhhhccc--cCEEEecCC
Confidence 455555 4566 6664 3667899999987 568888754 444566 999999874
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.15 E-value=0.74 Score=37.47 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=70.6
Q ss_pred HhhhhhccCCccEEEeccCCCCCC-----cccccCCCCCccEEEecCCCCceecCCCCcC------CCceEEEeccCCCC
Q 043667 256 QQQLCELSCRLEYLRLRYCKGLVK-----LPQSSLSLSSLREIDIYDCSSLVSFPEVALP------SKLKKIEIRKCDAL 324 (387)
Q Consensus 256 ~~~l~~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~------~~L~~L~l~~c~~l 324 (387)
+..+...-+.|++|++.++..+.+ +...+..-..|+.|++++| .+.+.....+. ..|++|+++++ .+
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N-~I 110 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-FL 110 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-BC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC-cC
Confidence 333333348999999987545543 3445667789999999984 66654433322 78999999874 46
Q ss_pred Cc-----cccccccCCCCCcceEecccCc--ccccc-----cCC-CCCCCccEEeecC
Q 043667 325 KS-----LPEAWMCDTNSSLETLKIERCR--SLTYI-----AGV-QLPPSLKRLDIWN 369 (387)
Q Consensus 325 ~~-----l~~~~~~~~~~~L~~L~l~~c~--~l~~~-----~~~-~~~~~L~~L~l~~ 369 (387)
.+ +.+.+..-+. |++|+++++. .+.+- ... ..-++|++|+++.
T Consensus 111 g~~Ga~ala~aL~~N~t--L~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQS--IVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp CHHHHHHHHHHTTTTCC--CSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred CHHHHHHHHHHHhhCCc--eeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 53 4455544555 9999998753 33321 111 2236789998875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=30.78 E-value=73 Score=22.22 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=8.2
Q ss_pred ccccccccCCCccEEEec
Q 043667 222 SHDGLLQDICSLKKLTID 239 (387)
Q Consensus 222 ~~~~~l~~~~~L~~L~l~ 239 (387)
+....|..|.+|+.+.+.
T Consensus 34 Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 34 LYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CCTTSSTTCTTCCCEEEC
T ss_pred EcHHHHhccCCccEEEEc
Confidence 333334445555555544
Done!