BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043668
         (415 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1X3B|A Chain A, Solution Structure Of The Fas1 Domain Of Human
           Transforming Growth Factor-Beta Induced Protein Ig-H3
          Length = 146

 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 10/102 (9%)

Query: 77  TIFAPKNEAFERDLLDPEFKRFLLQPANIKSLQNLLLFHIIPRKIAFGSEEWSARHKTLA 136
           T+FAP NEAF R L   E  R L    + K L N+L +HI    +  G      R K+L 
Sbjct: 44  TVFAPTNEAF-RALPPRERSRLL---GDAKELANILKYHIGDEILVSGGIGALVRLKSLQ 99

Query: 137 GDGVD-----ELFPLNLAKVVHPDSITRPDGTIHGISQLMVP 173
           GD ++      +  +N   V  PD I   +G +H I+ ++ P
Sbjct: 100 GDKLEVSLKNNVVSVNKEPVAEPD-IMATNGVVHVITNVLQP 140


>pdb|2VXP|A Chain A, The Fourth Fas1 Domain Structure Of Human Bigh3
 pdb|2VXP|B Chain B, The Fourth Fas1 Domain Structure Of Human Bigh3
          Length = 132

 Score = 41.2 bits (95), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 10/100 (10%)

Query: 77  TIFAPKNEAFERDLLDPEFKRFLLQPANIKSLQNLLLFHIIPRKIAFGSEEWSARHKTLA 136
           T+FAP NEAF R L   E  R L    + K L N+L +HI    +  G      R K+L 
Sbjct: 37  TVFAPTNEAF-RALPPRERSRLL---GDAKELANILKYHIGDEILVSGGIGALVRLKSLQ 92

Query: 137 GDGVD-----ELFPLNLAKVVHPDSITRPDGTIHGISQLM 171
           GD ++      +  +N   V  PD I   +G +H I+ ++
Sbjct: 93  GDKLEVSLKNNVVSVNKEPVAEPD-IMATNGVVHVITNVL 131


>pdb|1W7E|A Chain A, Nmr Ensemble Of Fasciclin-Like Protein From Rhodobacter
           Sphaeroides
 pdb|1W7D|A Chain A, Nmr Structure Of Fasciclin-Like Protein From Rhodobacter
           Sphaeroides
          Length = 137

 Score = 36.2 bits (82), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 9/104 (8%)

Query: 77  TIFAPKNEAFERDLLDPEFKRFLLQPANIKSLQNLLLFHIIPRKIAFGSEEWSARHKTLA 136
           T+FAP + AF    L       LL+P N + L  +L +H++P ++           +T+ 
Sbjct: 38  TVFAPTDAAFAA--LPEGTVEDLLKPENKEKLTEILTYHVVPGEVMSSDLTEGMTAETVE 95

Query: 137 GDGVDELFPLNLAKVVHPDSITRPD-----GTIHGISQLMVPRS 175
           G  +     L     V+  SI++PD     G IH I  +++P +
Sbjct: 96  GGAL--TVTLEGGPKVNGVSISQPDVDASNGVIHVIDGVLMPGA 137


>pdb|3VB2|A Chain A, Crystal Structure Of The Reduced Form Of Marr From E.coli
 pdb|3VB2|B Chain B, Crystal Structure Of The Reduced Form Of Marr From E.coli
          Length = 144

 Score = 29.3 bits (64), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 8/73 (10%)

Query: 272 EMADIL-VNLTSLASEIGKLVSEGYVLTILAPNDE--AMVKLTTDQLSEPGAAEQIMYYH 328
           E+  +L V+L +L   + +LVS+G+V  +  PND+   +VKLTT      GAA     + 
Sbjct: 59  ELKKVLSVDLGALTRMLDRLVSKGWVERLPNPNDKRGVLVKLTTG-----GAAISEQSHQ 113

Query: 329 MVAEYQTEESMYN 341
           +V +   +E   N
Sbjct: 114 LVGQDLHQELTKN 126


>pdb|1SPI|A Chain A, Crystal Structure Of Spinach Chloroplast Fructose-1,6-
           Bisphosphatase At 2.8 Angstroms Resolution
 pdb|1SPI|B Chain B, Crystal Structure Of Spinach Chloroplast Fructose-1,6-
           Bisphosphatase At 2.8 Angstroms Resolution
 pdb|1SPI|C Chain C, Crystal Structure Of Spinach Chloroplast Fructose-1,6-
           Bisphosphatase At 2.8 Angstroms Resolution
 pdb|1SPI|D Chain D, Crystal Structure Of Spinach Chloroplast Fructose-1,6-
           Bisphosphatase At 2.8 Angstroms Resolution
          Length = 358

 Score = 28.9 bits (63), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 284 ASEIGKLVSEGYVLTILAPNDEAMVKLTTDQLSEPGAAEQ 323
           +S I   VS G +  I +PNDE +V    D  S+  A EQ
Sbjct: 133 SSNIDAAVSTGSIFGIYSPNDECIVDSDHDDESQLSAEEQ 172


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,339,147
Number of Sequences: 62578
Number of extensions: 353178
Number of successful extensions: 642
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 639
Number of HSP's gapped (non-prelim): 5
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)