Query 043668
Match_columns 415
No_of_seqs 307 out of 1240
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 07:12:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043668.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043668hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1437 Fasciclin and related 99.9 1.7E-26 3.7E-31 246.9 10.5 348 31-387 82-507 (682)
2 COG2335 Secreted and surface p 99.9 5.9E-26 1.3E-30 208.7 9.7 132 36-176 45-184 (187)
3 PF02469 Fasciclin: Fasciclin 99.8 6.4E-21 1.4E-25 164.1 9.9 115 49-173 1-128 (128)
4 smart00554 FAS1 Four repeated 99.8 1.5E-18 3.2E-23 143.7 8.3 89 77-174 1-99 (99)
5 KOG1437 Fasciclin and related 99.7 1.7E-17 3.6E-22 178.2 14.7 245 39-391 374-645 (682)
6 COG2335 Secreted and surface p 99.7 5.1E-18 1.1E-22 156.4 6.3 127 257-390 47-184 (187)
7 smart00554 FAS1 Four repeated 99.5 1.7E-14 3.6E-19 119.4 3.9 89 298-388 1-99 (99)
8 PF02469 Fasciclin: Fasciclin 99.5 3.8E-14 8.2E-19 121.9 3.9 112 270-387 3-128 (128)
9 PF09314 DUF1972: Domain of un 15.3 1.1E+02 0.0023 28.9 2.0 32 266-306 15-46 (185)
10 PF15016 DUF4520: Domain of un 11.1 1.5E+02 0.0032 24.6 1.4 20 370-389 20-39 (85)
No 1
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.93 E-value=1.7e-26 Score=246.86 Aligned_cols=348 Identities=40% Similarity=0.546 Sum_probs=267.0
Q ss_pred CCCCCCCCCCHHHHHhcCCCcHHHHHHHHHcCcHHHHHh------ccCCCCeEEEEeCchhhhcCCCCHHHHHHhcCccC
Q 043668 31 SNPSSQINSNSVLLALLDSHYTELAELVEKALLLQTLEQ------AVATHNVTIFAPKNEAFERDLLDPEFKRFLLQPAN 104 (415)
Q Consensus 31 ~~~~~~~~~niv~~l~~~~~lS~f~~~L~~agL~~~L~~------~~~~~~~TVFAPtN~AF~~~~L~~~~~~~L~~p~n 104 (415)
.++...+..+.+..+.....+......+..+...+.+++ ..+++++|+|+|.|+||.+. +++.+..++..|.+
T Consensus 82 ~~~~~~i~~~~v~pa~lps~~~~~~~~v~~a~t~Q~~~n~~~~~~~~g~~~ftIFa~~neaw~~~-~d~~v~~~le~~~n 160 (682)
T KOG1437|consen 82 QPGTGKIETNAVFPALLPSRNNALAEGVEKALTLQVLENTASKLEAEGNKDFTIFAPSNEAWTNN-LDSRVKSFLESPYN 160 (682)
T ss_pred CCcceEecccccccccCCchhhhhhhhhcceeEEEecccchhhhhhccCCceEEecccccchhcC-CChhhhhhccccch
Confidence 567777778888888788888888888887766555554 33789999999999999996 78889999988999
Q ss_pred HHHHHHHHhccccccc-cccchhhhhh------ccccCCCCceeEE----EE------ecceEEEccCceEeCCcEEEEe
Q 043668 105 IKSLQNLLLFHIIPRK-IAFGSEEWSA------RHKTLAGDGVDEL----FP------LNLAKVVHPDSITRPDGTIHGI 167 (415)
Q Consensus 105 ~~~L~~lL~yHIv~g~-~~l~s~~L~~------~~~TL~G~~l~~i----v~------Vn~a~Vv~~D~I~a~NGVIHvI 167 (415)
.+.+.+++++|+++.+ . ..+++.+ .+.++.+..+. . .. ++.+.+...+++...+|+||.|
T Consensus 161 ~d~~~~~l~~h~i~q~~v--~~~~~~~~~~~p~~~~~l~~~~~~-~~~~~~~~~~~r~~~~~~~t~~~Di~~~d~~I~~I 237 (682)
T KOG1437|consen 161 LDSLNQLLRSHIINQRLV--SSAQLPNKMIIPKMHRTLGNKELH-YLNGIVTVNYKRLVNNDVITTNYDLLRIDGVIHTI 237 (682)
T ss_pred HHHHHHHHHhcccchhhc--cchhcccccccccccccCCCceEE-eeccccceeccccccccccccccccccCCCceEee
Confidence 9999999999999999 6 7777765 45666766654 2 12 2344444444477888999999
Q ss_pred CccccCccchhhhhhccccccccccCCCCCCCCChhhhhccccCccc--CCCCCCCCccc-------------ccccccC
Q 043668 168 SQLMVPRSVQNEFNRRRNLDSIAAVKPEAAPEIDPRVITKKLNKPVF--NVKPYSPPVLP-------------ISEAIAA 232 (415)
Q Consensus 168 D~VLiP~s~~~~~~~~~~l~~~sa~~p~~~~~~d~~~~~~~lk~~~~--~~~~~~~~~l~-------------v~~~~~~ 232 (415)
+..+.|...++++....+..+++.+.|++++++|+| +|..++... ..+.+..++.+ |...+.+
T Consensus 238 ~~~~~~~~~~~d~~~~~~~~~~t~~~~e~a~~~d~r--t~~a~tn~a~~~ip~~~~~~~~~~~~v~~~~~~~~i~~~~~~ 315 (682)
T KOG1437|consen 238 GRLIIPRIEQEDFLKYLSGASATVFLPELAPFVDPR--THLAPTNEAFFTIPRGYPPRILGYHLVLGNLKYNHILDNMKL 315 (682)
T ss_pred eeccchhhhhccchhcccccceeeeccccccccccc--cccccCcchhhcccccCCCcccccccchhhhhhhhhcccccc
Confidence 999999999999999998889999999999999998 777776622 24445555555 7778889
Q ss_pred CCCCCC----------CCCCCCCCCCCccccchhH-HHHHHH--HHHcCCcchHHHHHHhhhhhhhh-----hcccccCC
Q 043668 233 GPGQAP----------ASAPAPGGPRDHFDGHIQV-KDFIKT--LVHYGGYNEMADILVNLTSLASE-----IGKLVSEG 294 (415)
Q Consensus 233 ~~~~ap----------apaP~~~~~~~~~~~~~~~-~~~~~~--L~~~gg~~~fa~ll~n~t~~~~~-----~~~l~~~~ 294 (415)
+++.++ +++||++|.+++++|..++ |+++.+ +++.+++....+++.+.++++.+ +.++.++.
T Consensus 316 ~~s~~~~~~r~~~~~~~~a~g~~g~~~~~ng~~~I~kd~i~~~~~lh~id~~l~p~~~~~l~~La~e~~~st~~rlv~el 395 (682)
T KOG1437|consen 316 GPSLAPGTVRLTGEGVAIAPGSSGERYHINGRAIIQKDFIHTNGLLHYIDYVLEPDSLKNLMSLAREDEISTSMRLVAEL 395 (682)
T ss_pred cccccccceeeccccccccccCCCceEEeecceeEEEeeeccceEEEEcccccCCchHHHHHHHHhcccccHHHHHHHhc
Confidence 999888 8899999999999999888 999999 99999999999988999998888 55666665
Q ss_pred ceeEEEecCcHHHhcCCccCCCChhh-------HHHHHHHhhcccccchhhcccce-eEEecCCe-EE---EcC-CC---
Q 043668 295 YVLTILAPNDEAMVKLTTDQLSEPGA-------AEQIMYYHMVAEYQTEESMYNAV-VAVEADGS-VE---FGS-GG--- 358 (415)
Q Consensus 295 ~~~TvfaPtd~Af~~l~~~~l~~~~~-------~~~il~yH~vp~~~~~~~l~~~~-~~~~~~g~-v~---~~~-g~--- 358 (415)
+-+|+|+|+|+|+-.+|.+++.++.. +++||+||++|.|+..++++++. .+...+|. +. ... +.
T Consensus 396 gll~~L~~n~e~t~~lp~n~~fd~~~~~~~r~l~~qIL~~HII~~~~~~~~~y~~~~~v~t~g~~~l~~fv~r~~~s~~~ 475 (682)
T KOG1437|consen 396 GLLTALAPNDEATLLLPTNNLFDDLTPLESRRLAEQILYNHIIPEYLTSSSMYNGQTTVRTLGKNKLLYFVYRHSVSANV 475 (682)
T ss_pred cceEEEcCCCceEEeeehhhhccCCChhhhHHHHHHHHHHhCcchhhhhhhhhcccceeeccCCeEEEEEEecccccccc
Confidence 55555555555555555544433222 48999999999999999999755 44555552 21 111 10
Q ss_pred -----CCCceEEeCCccc-cCCceEEEEecccccC
Q 043668 359 -----GNGAAYLFDPDIY-TDGRISVQGIDGVLFP 387 (415)
Q Consensus 359 -----~~~~~~~~~~~i~-~dg~iaV~~iD~VL~P 387 (415)
++ .+.++++|+. ++|. ||.||+||.|
T Consensus 476 t~i~~~~-~~~Ii~aDi~~~nGv--vH~id~vl~p 507 (682)
T KOG1437|consen 476 TDILIGN-EACIIEADISVKNGV--VHIIDRVLDP 507 (682)
T ss_pred eeeeccc-eeeEEecccceecCc--eEEeeEEcCc
Confidence 12 3678899996 6695 9999999999
No 2
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=5.9e-26 Score=208.70 Aligned_cols=132 Identities=30% Similarity=0.438 Sum_probs=124.6
Q ss_pred CCCCCHHHHHhcCCCcHHHHHHHHHcCcHHHHHhccCCCCeEEEEeCchhhhcCCCCHHHHHHhcCccCHHHHHHHHhcc
Q 043668 36 QINSNSVLLALLDSHYTELAELVEKALLLQTLEQAVATHNVTIFAPKNEAFERDLLDPEFKRFLLQPANIKSLQNLLLFH 115 (415)
Q Consensus 36 ~~~~niv~~l~~~~~lS~f~~~L~~agL~~~L~~~~~~~~~TVFAPtN~AF~~~~L~~~~~~~L~~p~n~~~L~~lL~yH 115 (415)
....+|++.+.++++|++|..+++.++|.++|+ +.|+||||||+|+||.+ |+.++.+.|..|+|++.|.++|.||
T Consensus 45 ~~~~~iV~~a~~~~~f~tl~~a~~aa~Lv~~L~---~~gp~TVFaPtn~AFa~--lp~~T~~~Ll~pen~~~L~~iLtYH 119 (187)
T COG2335 45 GNRADIVESAANNPSFTTLVAALKAAGLVDTLN---ETGPFTVFAPTNEAFAK--LPAGTLDALLKPENKPLLTKILTYH 119 (187)
T ss_pred cchhHHHHHHccCcchHHHHHHHHhhhhHHHhc---CCCCeEEecCCHHHHHh--CChhHHHHHhCccchhhhheeeEEE
Confidence 456889999999999999999999999999999 89999999999999999 9999999999999999999999999
Q ss_pred ccccccccchhhhhh--ccccCCCCceeEE------EEecceEEEccCceEeCCcEEEEeCccccCccc
Q 043668 116 IIPRKIAFGSEEWSA--RHKTLAGDGVDEL------FPLNLAKVVHPDSITRPDGTIHGISQLMVPRSV 176 (415)
Q Consensus 116 Iv~g~~~l~s~~L~~--~~~TL~G~~l~~i------v~Vn~a~Vv~~D~I~a~NGVIHvID~VLiP~s~ 176 (415)
|++|.+ .++++.. .++|++|..+. + ++||.++|+..| |.++||+||+||+||+||..
T Consensus 120 Vv~Gk~--~~~~l~~~~~v~t~~G~~~~-i~~~~~~~~Vn~a~v~~~d-i~a~NgvIhvID~Vl~Pp~~ 184 (187)
T COG2335 120 VVEGKI--TAADLKSSGSVKTVQGADLK-IKVTGGGVYVNDATVTIAD-INASNGVIHVIDKVLIPPMD 184 (187)
T ss_pred EEcCcc--cHHHhhccccceeecCceEE-EEEcCCcEEEeeeEEEecc-EeccCcEEEEEeeeccCCCc
Confidence 999999 9999985 89999999988 5 789999999998 99999999999999999953
No 3
>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues. It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.
Probab=99.84 E-value=6.4e-21 Score=164.10 Aligned_cols=115 Identities=31% Similarity=0.544 Sum_probs=96.0
Q ss_pred CCcHHHHHHHHHcCcHHHHHhccCCCCeEEEEeCchhhhcCCCCHHHHHHhcCccCHHHHHHHHhccccccccccchhhh
Q 043668 49 SHYTELAELVEKALLLQTLEQAVATHNVTIFAPKNEAFERDLLDPEFKRFLLQPANIKSLQNLLLFHIIPRKIAFGSEEW 128 (415)
Q Consensus 49 ~~lS~f~~~L~~agL~~~L~~~~~~~~~TVFAPtN~AF~~~~L~~~~~~~L~~p~n~~~L~~lL~yHIv~g~~~l~s~~L 128 (415)
|+||+|.++++++|+.+.|++ +.+.+|||||+|+||++ ++.+....+.+ +.+.++++|+||++++.+ +.+++
T Consensus 1 ~~~s~f~~~l~~~~l~~~l~~--~~~~~TvfaP~d~a~~~--~~~~~~~~~~~--~~~~l~~~l~~hiv~~~~--~~~~l 72 (128)
T PF02469_consen 1 PDLSTFSRLLEQAGLADLLND--SDGNYTVFAPTDDAFQK--LSQETNSSLAD--SKEQLKSLLKYHIVPGSI--TSSDL 72 (128)
T ss_dssp -TTHHHHHHHHHTTCHHHHGC--SSSSEEEEEE-HHHHHH--SHHHHHHHHHT--HHHHHHHHHHHTEEES-----HCHH
T ss_pred CCHHHHHHHHHHcCCHHHHhc--CCCCEEEEEECHHHHHh--ccccccchhhh--hhhhHhhhhhhEEEcCce--ehhhh
Confidence 689999999999999999942 57999999999999999 76666666653 678999999999999999 99998
Q ss_pred hh---cccc-CCCCceeEE--------EEecc-eEEEccCceEeCCcEEEEeCccccC
Q 043668 129 SA---RHKT-LAGDGVDEL--------FPLNL-AKVVHPDSITRPDGTIHGISQLMVP 173 (415)
Q Consensus 129 ~~---~~~T-L~G~~l~~i--------v~Vn~-a~Vv~~D~I~a~NGVIHvID~VLiP 173 (415)
.. .++| ++|+.+. + +.+|+ ++|+..| +.++||+||+||+||+|
T Consensus 73 ~~~~~~~~t~~~g~~~~-v~~~~~~~~~~v~~~a~i~~~~-~~~~nG~ih~id~vL~P 128 (128)
T PF02469_consen 73 RNGKQTLETLLNGQPLR-VSSSPSNGTIYVNGKARIVKSD-IEASNGVIHIIDDVLIP 128 (128)
T ss_dssp HCHHEEEEBSSTTCEEE-EEEEGGTTEEEECCEEEESEEE-EEESSEEEEEESS-TSS
T ss_pred ccccccceeccCCCEEE-EEEEecCCceEecCceEEEeCC-EEeCCEEEEEECceECc
Confidence 76 5788 8999887 5 56788 9999998 99999999999999998
No 4
>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Probab=99.76 E-value=1.5e-18 Score=143.71 Aligned_cols=89 Identities=37% Similarity=0.675 Sum_probs=78.3
Q ss_pred EEEEeCchhhhcCCCCHHHHHHhcCccCHHHHHHHHhccccccccccchhhhhh--ccccCCCCceeEE--------EEe
Q 043668 77 TIFAPKNEAFERDLLDPEFKRFLLQPANIKSLQNLLLFHIIPRKIAFGSEEWSA--RHKTLAGDGVDEL--------FPL 146 (415)
Q Consensus 77 TVFAPtN~AF~~~~L~~~~~~~L~~p~n~~~L~~lL~yHIv~g~~~l~s~~L~~--~~~TL~G~~l~~i--------v~V 146 (415)
|||||+|+||++ ++.+..+.+. .+. .++++|+||++++++ +.++|.+ .++|+.|..++ + +++
T Consensus 1 TvfaP~d~Af~~--~~~~~~~~l~--~~~-~l~~ll~~Hiv~~~~--~~~~l~~~~~~~Tl~g~~l~-v~~~~~~~~i~i 72 (99)
T smart00554 1 TVFAPTDEAFQK--LPPGTLNSLL--ADP-KLKNLLLYHVVPGRL--SSADLLNGGTLPTLAGSKLR-VTRSGDSGTVTV 72 (99)
T ss_pred CEeCcCHHHHHh--cCHHHHHHHh--CCH-HHHHHHHhcEeCceE--cHHHhccCCccccCCCCEEE-EEEeCCCCeEEE
Confidence 899999999999 7776666665 334 899999999999999 9999976 88999999887 4 567
Q ss_pred cceEEEccCceEeCCcEEEEeCccccCc
Q 043668 147 NLAKVVHPDSITRPDGTIHGISQLMVPR 174 (415)
Q Consensus 147 n~a~Vv~~D~I~a~NGVIHvID~VLiP~ 174 (415)
|+++|+.+| +.++||+||+||+||+|+
T Consensus 73 n~~~v~~~d-i~~~nGvih~Id~vL~P~ 99 (99)
T smart00554 73 NGARIVEAD-IAATNGVVHVIDRVLLPP 99 (99)
T ss_pred cceEEEECC-EecCCeEEEEECceeCCC
Confidence 899999998 999999999999999996
No 5
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.74 E-value=1.7e-17 Score=178.22 Aligned_cols=245 Identities=25% Similarity=0.304 Sum_probs=162.5
Q ss_pred CCHHHHHhcCCCcHHHHHHHHHcCcHHHHHhccCCCCeEEEEeCchhhhcCCCCHHHHHHhcCccCHHHHHHHHhccccc
Q 043668 39 SNSVLLALLDSHYTELAELVEKALLLQTLEQAVATHNVTIFAPKNEAFERDLLDPEFKRFLLQPANIKSLQNLLLFHIIP 118 (415)
Q Consensus 39 ~niv~~l~~~~~lS~f~~~L~~agL~~~L~~~~~~~~~TVFAPtN~AF~~~~L~~~~~~~L~~p~n~~~L~~lL~yHIv~ 118 (415)
++..+++ .+.+-|++.+++.+-|+.+.|. ..+.+|+|+|+|.+|+. +.+...+.+ ++++|+||+++
T Consensus 374 ~~l~~La-~e~~~st~~rlv~elgll~~L~---~n~e~t~~lp~n~~fd~--~~~~~~r~l--------~~qIL~~HII~ 439 (682)
T KOG1437|consen 374 KNLMSLA-REDEISTSMRLVAELGLLTALA---PNDEATLLLPTNNLFDD--LTPLESRRL--------AEQILYNHIIP 439 (682)
T ss_pred HHHHHHH-hcccccHHHHHHHhccceEEEc---CCCceEEeeehhhhccC--CChhhhHHH--------HHHHHHHhCcc
Confidence 4555665 5568899999999999999888 56669999999999999 666544433 79999999999
Q ss_pred cccccchhhhhh---ccccCCCCceeEE------------EEe-cceEEEccCceEeCCcEEEEeCccccCccchhhhhh
Q 043668 119 RKIAFGSEEWSA---RHKTLAGDGVDEL------------FPL-NLAKVVHPDSITRPDGTIHGISQLMVPRSVQNEFNR 182 (415)
Q Consensus 119 g~~~l~s~~L~~---~~~TL~G~~l~~i------------v~V-n~a~Vv~~D~I~a~NGVIHvID~VLiP~s~~~~~~~ 182 (415)
.+. +++++.+ .++|++|..+..+ +.+ |.+.|+..| +..+||++|.||+|+-|.++.+.+.
T Consensus 440 ~~~--~~~~~y~~~~~v~t~g~~~l~~fv~r~~~s~~~t~i~~~~~~~Ii~aD-i~~~nGvvH~id~vl~p~~l~~~l~- 515 (682)
T KOG1437|consen 440 EYL--TSSSMYNGQTTVRTLGKNKLLYFVYRHSVSANVTDILIGNEACIIEAD-ISVKNGVVHIIDRVLDPVSLMEDLK- 515 (682)
T ss_pred hhh--hhhhhhcccceeeccCCeEEEEEEecccccccceeeeccceeeEEecc-cceecCceEEeeEEcCcccHHHHHh-
Confidence 999 8888876 7888888776521 112 346788888 9999999999999999944433211
Q ss_pred ccccccccccCCCCCCCCChhhhhccccCcccCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCCccccchhHHHHHH
Q 043668 183 RRNLDSIAAVKPEAAPEIDPRVITKKLNKPVFNVKPYSPPVLPISEAIAAGPGQAPASAPAPGGPRDHFDGHIQVKDFIK 262 (415)
Q Consensus 183 ~~~l~~~sa~~p~~~~~~d~~~~~~~lk~~~~~~~~~~~~~l~v~~~~~~~~~~apapaP~~~~~~~~~~~~~~~~~~~~ 262 (415)
.+++++.+.+
T Consensus 516 ----------------------------------------------------------------------~d~r~s~~~~ 525 (682)
T KOG1437|consen 516 ----------------------------------------------------------------------TDGRISGTVQ 525 (682)
T ss_pred ----------------------------------------------------------------------hccchhhhHH
Confidence 1112223333
Q ss_pred HHHHcCCcchHHHHHHhhhhhhhhhcccccCCceeEEEecCcHHHhcCCccCC--CChhhHHHHHHHhhcccccc--hhh
Q 043668 263 TLVHYGGYNEMADILVNLTSLASEIGKLVSEGYVLTILAPNDEAMVKLTTDQL--SEPGAAEQIMYYHMVAEYQT--EES 338 (415)
Q Consensus 263 ~L~~~gg~~~fa~ll~n~t~~~~~~~~l~~~~~~~TvfaPtd~Af~~l~~~~l--~~~~~~~~il~yH~vp~~~~--~~~ 338 (415)
.+... +|. .+| .....||+|+|||+||++.+.+.. .+...+..++.||++|+-.. ..+
T Consensus 526 ~le~~-~l~----------------e~l-~~~~~~t~fvPt~ka~~~~~~~~~~~~~~~~l~~~l~yH~v~~~~~ls~~~ 587 (682)
T KOG1437|consen 526 GLEGV-LLP----------------EEL-TPEGNYTLFVPTNKAWQKSTKDEKSLFHKKALQDFLKYHLVPGQSRLSLGS 587 (682)
T ss_pred hhhhc-CCh----------------hhh-ccCCceEEEeecccccccCCcchhhcchHHHHHHHHHhccccceeeeeccc
Confidence 33321 111 112 233479999999999999988764 67778899999999999652 111
Q ss_pred c-ccc--eeEEecCCeEEEcC--CCCC-CceEEeCCccc-cCCceEEEEecccccCCCCC
Q 043668 339 M-YNA--VVAVEADGSVEFGS--GGGN-GAAYLFDPDIY-TDGRISVQGIDGVLFPVKEG 391 (415)
Q Consensus 339 l-~~~--~~~~~~~g~v~~~~--g~~~-~~~~~~~~~i~-~dg~iaV~~iD~VL~P~~~~ 391 (415)
- +.. +......+.+-+.. ..+. ....++-.||. ++|+ ||+||.||-|++.+
T Consensus 588 ~~~v~~~~k~s~~~~~~~~~~~~~~~~vn~e~~~~~~i~~~n~~--~h~i~~vl~p~~l~ 645 (682)
T KOG1437|consen 588 SPYVMIQVKLSLRGDHLFFSLVNPRGDVNKERLVGIDIMGTNGV--VHVIDLVLKPPDLP 645 (682)
T ss_pred ccceeeeeeEEEecccEEeeeeccccceeeeeeeccceeeecce--eEEEEEEcccCcch
Confidence 0 100 11111122222211 0112 22334566775 5574 99999999997544
No 6
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=5.1e-18 Score=156.40 Aligned_cols=127 Identities=22% Similarity=0.327 Sum_probs=93.8
Q ss_pred HHHHHHHHHHcCCcchHHHHHHhhhhhhhhhcccccCCceeEEEecCcHHHhcCCccCC----C--ChhhHHHHHHHhhc
Q 043668 257 VKDFIKTLVHYGGYNEMADILVNLTSLASEIGKLVSEGYVLTILAPNDEAMVKLTTDQL----S--EPGAAEQIMYYHMV 330 (415)
Q Consensus 257 ~~~~~~~L~~~gg~~~fa~ll~n~t~~~~~~~~l~~~~~~~TvfaPtd~Af~~l~~~~l----~--~~~~~~~il~yH~v 330 (415)
.++++..-...+.|++|...+.+.. +-+..++.++||||||||+||++||...+ . ++..++++|.||+|
T Consensus 47 ~~~iV~~a~~~~~f~tl~~a~~aa~-----Lv~~L~~~gp~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYHVv 121 (187)
T COG2335 47 RADIVESAANNPSFTTLVAALKAAG-----LVDTLNETGPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYHVV 121 (187)
T ss_pred hhHHHHHHccCcchHHHHHHHHhhh-----hHHHhcCCCCeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEEEEE
Confidence 4567777777788888877665322 22223344589999999999999998643 3 78889999999999
Q ss_pred ccccchhhcccceeEEecCC-eEEE--cCCCC-CCceEEeCCccccC-CceEEEEecccccCCCC
Q 043668 331 AEYQTEESMYNAVVAVEADG-SVEF--GSGGG-NGAAYLFDPDIYTD-GRISVQGIDGVLFPVKE 390 (415)
Q Consensus 331 p~~~~~~~l~~~~~~~~~~g-~v~~--~~g~~-~~~~~~~~~~i~~d-g~iaV~~iD~VL~P~~~ 390 (415)
+|..+.+.+.....+++.+| .+++ +.++. ++.+.++..||-++ | +||+||+||+|++.
T Consensus 122 ~Gk~~~~~l~~~~~v~t~~G~~~~i~~~~~~~~Vn~a~v~~~di~a~Ng--vIhvID~Vl~Pp~~ 184 (187)
T COG2335 122 EGKITAADLKSSGSVKTVQGADLKIKVTGGGVYVNDATVTIADINASNG--VIHVIDKVLIPPMD 184 (187)
T ss_pred cCcccHHHhhccccceeecCceEEEEEcCCcEEEeeeEEEeccEeccCc--EEEEEeeeccCCCc
Confidence 99999998874445566666 3444 44433 55778888999755 7 59999999999864
No 7
>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Probab=99.49 E-value=1.7e-14 Score=119.41 Aligned_cols=89 Identities=28% Similarity=0.447 Sum_probs=64.7
Q ss_pred EEEecCcHHHhcCCcc---CC-CChhhHHHHHHHhhcccccchhhcccceeEEecCC-eEEEcCC---CC--CCceEEeC
Q 043668 298 TILAPNDEAMVKLTTD---QL-SEPGAAEQIMYYHMVAEYQTEESMYNAVVAVEADG-SVEFGSG---GG--NGAAYLFD 367 (415)
Q Consensus 298 TvfaPtd~Af~~l~~~---~l-~~~~~~~~il~yH~vp~~~~~~~l~~~~~~~~~~g-~v~~~~g---~~--~~~~~~~~ 367 (415)
|||||+|+||++++.+ .+ .++ .++++|+||++|++++.+++.+.....+..| .+.+... +. .+.+.++.
T Consensus 1 TvfaP~d~Af~~~~~~~~~~l~~~~-~l~~ll~~Hiv~~~~~~~~l~~~~~~~Tl~g~~l~v~~~~~~~~i~in~~~v~~ 79 (99)
T smart00554 1 TVFAPTDEAFQKLPPGTLNSLLADP-KLKNLLLYHVVPGRLSSADLLNGGTLPTLAGSKLRVTRSGDSGTVTVNGARIVE 79 (99)
T ss_pred CEeCcCHHHHHhcCHHHHHHHhCCH-HHHHHHHhcEeCceEcHHHhccCCccccCCCCEEEEEEeCCCCeEEEcceEEEE
Confidence 8999999999999875 33 234 7899999999999999988876443333334 4544331 11 23457788
Q ss_pred CccccCCceEEEEecccccCC
Q 043668 368 PDIYTDGRISVQGIDGVLFPV 388 (415)
Q Consensus 368 ~~i~~dg~iaV~~iD~VL~P~ 388 (415)
.|+.+++ -+||+||+||+|+
T Consensus 80 ~di~~~n-Gvih~Id~vL~P~ 99 (99)
T smart00554 80 ADIAATN-GVVHVIDRVLLPP 99 (99)
T ss_pred CCEecCC-eEEEEECceeCCC
Confidence 8998662 2699999999995
No 8
>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues. It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.
Probab=99.45 E-value=3.8e-14 Score=121.88 Aligned_cols=112 Identities=27% Similarity=0.406 Sum_probs=70.6
Q ss_pred cchHHHHHHhhhhhhhhhcccccCCceeEEEecCcHHHhcCCccCC----CChhhHHHHHHHhhcccccchhhcccc-ee
Q 043668 270 YNEMADILVNLTSLASEIGKLVSEGYVLTILAPNDEAMVKLTTDQL----SEPGAAEQIMYYHMVAEYQTEESMYNA-VV 344 (415)
Q Consensus 270 ~~~fa~ll~n~t~~~~~~~~l~~~~~~~TvfaPtd~Af~~l~~~~l----~~~~~~~~il~yH~vp~~~~~~~l~~~-~~ 344 (415)
|++|.+++... .+.. .|.+....+|||||+|+||++++.+.. .+++.++++|+||++|+.++.+.+.+. ..
T Consensus 3 ~s~f~~~l~~~-~l~~---~l~~~~~~~TvfaP~d~a~~~~~~~~~~~~~~~~~~l~~~l~~hiv~~~~~~~~l~~~~~~ 78 (128)
T PF02469_consen 3 LSTFSRLLEQA-GLAD---LLNDSDGNYTVFAPTDDAFQKLSQETNSSLADSKEQLKSLLKYHIVPGSITSSDLRNGKQT 78 (128)
T ss_dssp THHHHHHHHHT-TCHH---HHGCSSSSEEEEEE-HHHHHHSHHHHHHHHHTHHHHHHHHHHHTEEES---HCHHHCHHEE
T ss_pred HHHHHHHHHHc-CCHH---HHhcCCCCEEEEEECHHHHHhccccccchhhhhhhhHhhhhhhEEEcCceehhhhcccccc
Confidence 55566665432 2222 222344579999999999999954332 256778999999999999998888776 34
Q ss_pred EEe-cCC-eEEEcCC---C---CCCceEEeCCccccC-CceEEEEecccccC
Q 043668 345 AVE-ADG-SVEFGSG---G---GNGAAYLFDPDIYTD-GRISVQGIDGVLFP 387 (415)
Q Consensus 345 ~~~-~~g-~v~~~~g---~---~~~~~~~~~~~i~~d-g~iaV~~iD~VL~P 387 (415)
..+ .+| .+.+... + +++.+.++..++..+ | .||.||+||+|
T Consensus 79 ~~t~~~g~~~~v~~~~~~~~~~v~~~a~i~~~~~~~~nG--~ih~id~vL~P 128 (128)
T PF02469_consen 79 LETLLNGQPLRVSSSPSNGTIYVNGKARIVKSDIEASNG--VIHIIDDVLIP 128 (128)
T ss_dssp EEBSSTTCEEEEEEEGGTTEEEECCEEEESEEEEEESSE--EEEEESS-TSS
T ss_pred ceeccCCCEEEEEEEecCCceEecCceEEEeCCEEeCCE--EEEEECceECc
Confidence 444 444 4554332 2 123367777788644 7 59999999998
No 9
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=15.28 E-value=1.1e+02 Score=28.88 Aligned_cols=32 Identities=31% Similarity=0.583 Sum_probs=22.8
Q ss_pred HcCCcchHHHHHHhhhhhhhhhcccccCCceeEEEecCcHH
Q 043668 266 HYGGYNEMADILVNLTSLASEIGKLVSEGYVLTILAPNDEA 306 (415)
Q Consensus 266 ~~gg~~~fa~ll~n~t~~~~~~~~l~~~~~~~TvfaPtd~A 306 (415)
.+|||.+|++=|. ..|.+.|-.+||+|-++.-
T Consensus 15 ~YGGfET~ve~L~---------~~l~~~g~~v~Vyc~~~~~ 46 (185)
T PF09314_consen 15 RYGGFETFVEELA---------PRLVSKGIDVTVYCRSDYY 46 (185)
T ss_pred ccCcHHHHHHHHH---------HHHhcCCceEEEEEccCCC
Confidence 5799999986542 1344567789999987654
No 10
>PF15016 DUF4520: Domain of unknown function (DUF4520)
Probab=11.10 E-value=1.5e+02 Score=24.64 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=16.4
Q ss_pred cccCCceEEEEecccccCCC
Q 043668 370 IYTDGRISVQGIDGVLFPVK 389 (415)
Q Consensus 370 i~~dg~iaV~~iD~VL~P~~ 389 (415)
-|+||+|.+|--|++.|=..
T Consensus 20 AysDgrVr~~F~Drt~L~l~ 39 (85)
T PF15016_consen 20 AYSDGRVRVHFDDRTILTLI 39 (85)
T ss_pred EEcCCeEEEEEcCCCEEEEE
Confidence 48899999999999987643
Done!