Query 043668
Match_columns 415
No_of_seqs 307 out of 1240
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 12:12:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043668.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043668hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o70_A Fasciclin I, FAS I, FCN 100.0 1.8E-38 6.2E-43 314.6 17.5 254 37-391 4-313 (324)
2 1w7d_A Fasciclin-like protein; 99.9 2.6E-28 8.8E-33 214.2 6.1 129 38-175 2-137 (137)
3 2vxp_A Transforming growth fac 99.9 8.1E-27 2.8E-31 203.4 13.7 123 39-172 2-132 (132)
4 1nyo_A Immunogenic protein MPT 99.9 1.9E-26 6.5E-31 208.6 8.1 130 34-175 23-163 (163)
5 1o70_A Fasciclin I, FAS I, FCN 99.8 4.9E-20 1.7E-24 182.3 8.5 129 39-177 159-313 (324)
6 1w7d_A Fasciclin-like protein; 99.8 1.3E-19 4.5E-24 158.7 4.0 123 260-389 5-137 (137)
7 2vxp_A Transforming growth fac 99.7 1.5E-18 5E-23 151.1 4.8 121 259-386 3-132 (132)
8 1nyo_A Immunogenic protein MPT 99.7 4.4E-18 1.5E-22 153.7 4.6 124 257-389 27-163 (163)
9 2l1a_A Formin-C, @; fruiting B 6.5 2.4E+02 0.0081 22.4 2.0 20 247-266 35-54 (107)
10 1jrj_A Exendin-4; Trp-CAGE, GL 4.3 3.4E+02 0.012 18.4 1.3 25 256-280 5-29 (39)
No 1
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=100.00 E-value=1.8e-38 Score=314.57 Aligned_cols=254 Identities=16% Similarity=0.239 Sum_probs=172.0
Q ss_pred CCCCHHHHHh------cCCCcHHHHHHHHHcC--cHHHHHhccCCCCeEEEEeCchhhhcCCCCHHHHHHhcCccCHHHH
Q 043668 37 INSNSVLLAL------LDSHYTELAELVEKAL--LLQTLEQAVATHNVTIFAPKNEAFERDLLDPEFKRFLLQPANIKSL 108 (415)
Q Consensus 37 ~~~niv~~l~------~~~~lS~f~~~L~~ag--L~~~L~~~~~~~~~TVFAPtN~AF~~~~L~~~~~~~L~~p~n~~~L 108 (415)
.+.||+++|. .+++||+|.++|+++| |.+.|+ +.++||||||+|+||++ +.. +.|. .+++.|
T Consensus 4 ~~~~i~~~L~~~~~~~~~~~~s~~~~~l~~ag~~l~~~L~---~~~~~TvFAPtn~Af~~--~~~---~~l~--~~~~~l 73 (324)
T 1o70_A 4 ADTTVTQFLQSFKENAENGALRKFYEVIMDNGGAVLDDIN---SLTEVTILAPSNEAWNS--SNI---NNVL--RDRNKM 73 (324)
T ss_dssp ---------------CCHHHHHHHHHHHHHTCSHHHHHHH---TCSSEEEEEECHHHHHH--TCT---HHHH--TCHHHH
T ss_pred ehhhHHHHHHHHHhhhcCCcHHHHHHHHHHHhHHHHHHHc---CCCCeEEEEEChHhhhc--ccH---hhhh--CCHHHH
Confidence 4578888887 6899999999999999 999999 78999999999999998 432 2233 478899
Q ss_pred HHHHhccccccccccchhhhhh-------ccccCCCCc-eeE-E--------EEecc----eEEEccCceEeCCcEEEEe
Q 043668 109 QNLLLFHIIPRKIAFGSEEWSA-------RHKTLAGDG-VDE-L--------FPLNL----AKVVHPDSITRPDGTIHGI 167 (415)
Q Consensus 109 ~~lL~yHIv~g~~~l~s~~L~~-------~~~TL~G~~-l~~-i--------v~Vn~----a~Vv~~D~I~a~NGVIHvI 167 (415)
+++|+|||+++++ ++++|.+ .++|+.|+. +.+ + +++|+ ++|+.+| |.++|||||+|
T Consensus 74 ~~iL~yHvv~g~~--~~~~l~~~~~~~~~~~~Tl~g~~~l~~~v~~~~~~~~v~v~~g~~~a~v~~~d-i~~~NGvIhvI 150 (324)
T 1o70_A 74 RQILNMHIIKDRL--NVDKIRQKNANLIAQVPTVNNNTFLYFNVRGEGSDTVITVEGGGVNATVIQAD-VAQTNGYVHII 150 (324)
T ss_dssp HHHHHHTEESSCC--CHHHHHHHTSSSCCCEEBSSTTCEEEEEEESCGGGCEEEEEETTEEEEEEEEE-EECSSEEEEEE
T ss_pred HHHHHhcEeCCee--cHHHHhhccCCCceEEEcCCCCceEEEEEeecCCceEEEEcCCceeEEEEecc-ccccCcEEEEE
Confidence 9999999999999 9999865 467888876 331 1 45553 8999998 99999999999
Q ss_pred CccccCccchhhhhhccccccccccCCCCCCCCChhhhhccccCcccCCCCCCCCcccccccccCCCCCCCCCCCCCCCC
Q 043668 168 SQLMVPRSVQNEFNRRRNLDSIAAVKPEAAPEIDPRVITKKLNKPVFNVKPYSPPVLPISEAIAAGPGQAPASAPAPGGP 247 (415)
Q Consensus 168 D~VLiP~s~~~~~~~~~~l~~~sa~~p~~~~~~d~~~~~~~lk~~~~~~~~~~~~~l~v~~~~~~~~~~apapaP~~~~~ 247 (415)
|+||.|+..-
T Consensus 151 D~VL~pp~~t---------------------------------------------------------------------- 160 (324)
T 1o70_A 151 DHVLGVPYTT---------------------------------------------------------------------- 160 (324)
T ss_dssp SSCTTSCCSC----------------------------------------------------------------------
T ss_pred chhhhhchhh----------------------------------------------------------------------
Confidence 9999997310
Q ss_pred CCccccchhHHHHHHHHHHcCCcchHHHHHHhhhhhhhhhcccccCCceeEEEecCcHHHhcCC----cc---CC-CChh
Q 043668 248 RDHFDGHIQVKDFIKTLVHYGGYNEMADILVNLTSLASEIGKLVSEGYVLTILAPNDEAMVKLT----TD---QL-SEPG 319 (415)
Q Consensus 248 ~~~~~~~~~~~~~~~~L~~~gg~~~fa~ll~n~t~~~~~~~~l~~~~~~~TvfaPtd~Af~~l~----~~---~l-~~~~ 319 (415)
+.+.|.+.+.|+.|..++. .+.+. ..|.+.++++|||||+|+||+++. .+ .| .+..
T Consensus 161 ------------i~~~l~~~~~fs~~~~~l~-~~gl~---~~L~~~~~~~TvFAPtd~Af~~l~~~~~~~~~~~l~~~~~ 224 (324)
T 1o70_A 161 ------------VLGKLESDPMMSDTYKMGK-FSHFN---DQLNNTQRRFTYFVPRDKGWQKTELDYPSAHKKLFMADFS 224 (324)
T ss_dssp ------------HHHHHHHCGGGHHHHHHTT-TTTTT---GGGGCSSSEEEEEEECHHHHHHHHHHCHHHHHHHTSGGGH
T ss_pred ------------HHHHhhcCchHHHHHHHHH-hhCHH---HHhCCCCCCeEEEEeChHHHHhhhhhchhHHHHHhccCcH
Confidence 1122223333444444432 11111 234434568999999999999984 22 23 2333
Q ss_pred -hHHHHHHHhhccc--ccchhhcccce------eEEecCCeEEEcC---CC---C---CCceEEeCCccc-cCCceEEEE
Q 043668 320 -AAEQIMYYHMVAE--YQTEESMYNAV------VAVEADGSVEFGS---GG---G---NGAAYLFDPDIY-TDGRISVQG 380 (415)
Q Consensus 320 -~~~~il~yH~vp~--~~~~~~l~~~~------~~~~~~g~v~~~~---g~---~---~~~~~~~~~~i~-~dg~iaV~~ 380 (415)
.++++|+||++|+ +++.++|.+.. ...+-++.+.+.. |+ + ++.+.++..||. .+| +||+
T Consensus 225 ~~l~~iL~yHvv~~~~~~~~~~l~~~~~~~~~~~~~Tl~~~l~v~~~~~~~~v~v~~~~~~a~v~~~di~~~NG--vIHv 302 (324)
T 1o70_A 225 YHSKSILERHLAISDKEYTMKDLVKFSQESGSVILPTFRDSLSIRVEEEAGRYVIIWNYKKINVYRPDVECTNG--IIHV 302 (324)
T ss_dssp HHHHHHHHTTEEEESSCCCHHHHHHHHHHSSSEEEECSSSEEEEEEEEETTEEEEEETTEEEEEEEEEEEETTE--EEEE
T ss_pred HHHHHHHHhcEeCCcceEcHHHHhhhccCCCeeeeeccCCcEEEEEEecCCEEEEEecCceeEEEEcccccCCC--eEEE
Confidence 7899999999999 88877775311 0111113333321 21 0 235677788986 558 4999
Q ss_pred ecccccCCCCC
Q 043668 381 IDGVLFPVKEG 391 (415)
Q Consensus 381 iD~VL~P~~~~ 391 (415)
||+||+|++..
T Consensus 303 ID~VL~P~~~~ 313 (324)
T 1o70_A 303 IDYPLLEEKDV 313 (324)
T ss_dssp ESSCSCCTTTT
T ss_pred eceeecCCccc
Confidence 99999998643
No 2
>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A
Probab=99.94 E-value=2.6e-28 Score=214.23 Aligned_cols=129 Identities=27% Similarity=0.447 Sum_probs=118.8
Q ss_pred CCCHHHHHhcCCCcHHHHHHHHHcCcHHHHHhccCCCCeEEEEeCchhhhcCCCCHHHHHHhcCccCHHHHHHHHhcccc
Q 043668 38 NSNSVLLALLDSHYTELAELVEKALLLQTLEQAVATHNVTIFAPKNEAFERDLLDPEFKRFLLQPANIKSLQNLLLFHII 117 (415)
Q Consensus 38 ~~niv~~l~~~~~lS~f~~~L~~agL~~~L~~~~~~~~~TVFAPtN~AF~~~~L~~~~~~~L~~p~n~~~L~~lL~yHIv 117 (415)
.+||++++..+++||+|.++++++|+.+.|+ +.++||||||+|+||++ ++++..+.|++|.+++.|+++|+|||+
T Consensus 2 ~~~i~~~l~~~~~~s~f~~~l~~agl~~~L~---~~~~~TvFAPtn~Af~~--l~~~~~~~l~~~~~~~~l~~lL~yHvv 76 (137)
T 1w7d_A 2 TGDIVETATGAGSFTTLLTAAEAAGLVDTLK---GDGPFTVFAPTDAAFAA--LPEGTVEDLLKPENKEKLTEILTYHVV 76 (137)
T ss_dssp CSTTGGGGGSCSSSTTTTHHHHHTTTHHHHT---SSSCEEEECCCHHHHTT--STTTHHHHTTSHHHHHHHHHHHHHHEE
T ss_pred CCCHHHHHHhCCCHHHHHHHHHHcCCHHHHc---CCCCEEEEEECHHHHHH--cCHhHHHHHhCcCCHHHHHHHHHhhEe
Confidence 4689999999999999999999999999999 78999999999999999 888888888766688999999999999
Q ss_pred ccccccchhhhhh--ccccCCCCceeEE-----EEecceEEEccCceEeCCcEEEEeCccccCcc
Q 043668 118 PRKIAFGSEEWSA--RHKTLAGDGVDEL-----FPLNLAKVVHPDSITRPDGTIHGISQLMVPRS 175 (415)
Q Consensus 118 ~g~~~l~s~~L~~--~~~TL~G~~l~~i-----v~Vn~a~Vv~~D~I~a~NGVIHvID~VLiP~s 175 (415)
++++ ++++|.+ .++|++|+.+. + +++|+++|+.+| |.++|||||+||+||+|++
T Consensus 77 ~~~~--~~~~l~~~~~~~tl~G~~l~-v~~~~gv~vn~a~v~~~d-i~~~NGvIHvID~VL~P~s 137 (137)
T 1w7d_A 77 PGEV--MSSDLTEGMTAETVEGGALT-VTLEGGPKVNGVSISQPD-VDASNGVIHVIDGVLMPGA 137 (137)
T ss_dssp ESCC--CTTTSCSSEEEECTTSCEEE-EECTTSCEETTEECSBCC-CBCSSSEEEBCSSCCSSCC
T ss_pred CcEE--cHHHhcCCCeeeccCCceEE-EEecCCEEEeCcEEEECC-eecCCeEEEEECeeeCCCC
Confidence 9999 9999987 78999999887 5 578999999998 9999999999999999984
No 3
>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A
Probab=99.94 E-value=8.1e-27 Score=203.45 Aligned_cols=123 Identities=32% Similarity=0.461 Sum_probs=113.0
Q ss_pred CCHHHHHhcCCCcHHHHHHHHHcCcHHHHHhccCCCCeEEEEeCchhhhcCCCCHHHHHHhcCccCHHHHHHHHhccccc
Q 043668 39 SNSVLLALLDSHYTELAELVEKALLLQTLEQAVATHNVTIFAPKNEAFERDLLDPEFKRFLLQPANIKSLQNLLLFHIIP 118 (415)
Q Consensus 39 ~niv~~l~~~~~lS~f~~~L~~agL~~~L~~~~~~~~~TVFAPtN~AF~~~~L~~~~~~~L~~p~n~~~L~~lL~yHIv~ 118 (415)
+||++++..+++||+|.++++++|+.+.|+ +.++||||||+|+||++ ++++.++.|. .+++.|+++|+|||++
T Consensus 2 ~ti~~~l~~~~~fs~~~~~l~~agl~~~L~---~~~~~TvFAPtn~Af~~--l~~~~~~~l~--~~~~~l~~iL~yHvv~ 74 (132)
T 2vxp_A 2 GTVMDVLKGDNRFSMLVAAIQSAGLTETLN---REGVYTVFAPTNEAFRA--LPPRERSRLL--GDAKELANILKYHIGD 74 (132)
T ss_dssp CCHHHHHTTSTTCHHHHHHHHHHTCHHHHH---SSCCEEEEEECHHHHHH--SCHHHHHHHH--TCHHHHHHHHHHSBBS
T ss_pred ccHHHHHHcCCCHHHHHHHHHHcCcHHHHc---CCCCEEEEeECHHHHHh--hCHHHHHHHh--cCHHHHHHHHHhcCcC
Confidence 589999999999999999999999999999 78999999999999999 8988888776 4789999999999999
Q ss_pred cccccchhhhhh--ccccCCCCceeEE------EEecceEEEccCceEeCCcEEEEeCcccc
Q 043668 119 RKIAFGSEEWSA--RHKTLAGDGVDEL------FPLNLAKVVHPDSITRPDGTIHGISQLMV 172 (415)
Q Consensus 119 g~~~l~s~~L~~--~~~TL~G~~l~~i------v~Vn~a~Vv~~D~I~a~NGVIHvID~VLi 172 (415)
+.+ +++++.. .++|++|+.+. + +++|+++|+.+| |.++|||||+||+||+
T Consensus 75 ~~~--~~~~l~~~~~~~tl~G~~l~-v~~~~~~v~vn~a~v~~~d-i~a~NGvIHvID~VLl 132 (132)
T 2vxp_A 75 EIL--VSGGIGALVRLKSLQGDKLE-VSLKNNVVSVNKEPVAEPD-IMATNGVVHVITNVLQ 132 (132)
T ss_dssp SCC--CSTTCSSCEEEEBTTSSEEE-EEEETTEEEESSCBEEEEE-EEETTEEEEEESSCC-
T ss_pred cee--ehhhccCCceEecCCCCEEE-EEEeCCEEEEeccEEEEcc-eecCCEEEEEECcEeC
Confidence 998 8888876 78999999887 5 678999999998 9999999999999985
No 4
>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1
Probab=99.93 E-value=1.9e-26 Score=208.56 Aligned_cols=130 Identities=22% Similarity=0.347 Sum_probs=117.7
Q ss_pred CCCCCCCHHHHHhcCCCcHHHHHHHH-----HcCcHHHHHhccCCCCeEEEEeCchhhhcCCCCHHHHHHhcCccCHHHH
Q 043668 34 SSQINSNSVLLALLDSHYTELAELVE-----KALLLQTLEQAVATHNVTIFAPKNEAFERDLLDPEFKRFLLQPANIKSL 108 (415)
Q Consensus 34 ~~~~~~niv~~l~~~~~lS~f~~~L~-----~agL~~~L~~~~~~~~~TVFAPtN~AF~~~~L~~~~~~~L~~p~n~~~L 108 (415)
.+....+|++++..+++||+|.++|+ ++|+.+.|+ +.+ ||||||+|+||++ ++++.++.|.. +++.|
T Consensus 23 ~g~~~~~i~~~l~~~~~~s~f~~~l~~~~~~~agl~~~L~---~~g-~TvFAPtn~AF~~--l~~~~~~~L~~--~~~~L 94 (163)
T 1nyo_A 23 QGMSQDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLN---SGQ-YTVFAPTNAAFSK--LPASTIDELKT--NSSLL 94 (163)
T ss_dssp THHHHSCHHHHHTTSTTTHHHHHHHHSSSCTTCCCHHHHT---SSS-EEECCBCHHHHHH--SCHHHHHHHTT--CSSHH
T ss_pred CCCCCcCHHHHHHhCCCHHHHHHHHHhccccccCHHHHhC---CCC-cEEEEECHHHHHh--ccHHHHHHHhc--CHHHH
Confidence 34577899999999999999999999 999999999 677 9999999999999 88888888863 66789
Q ss_pred HHHHhccccccccccchhhhhhccccCCCCceeEE------EEecceEEEccCceEeCCcEEEEeCccccCcc
Q 043668 109 QNLLLFHIIPRKIAFGSEEWSARHKTLAGDGVDEL------FPLNLAKVVHPDSITRPDGTIHGISQLMVPRS 175 (415)
Q Consensus 109 ~~lL~yHIv~g~~~l~s~~L~~~~~TL~G~~l~~i------v~Vn~a~Vv~~D~I~a~NGVIHvID~VLiP~s 175 (415)
+++|+|||+++.+ ++++|...++|++|+.+. + +++|+++|+.+| |.++|||||+||+||+|++
T Consensus 95 ~~iL~yHvv~g~~--~~~~l~g~~~Tl~G~~l~-v~~~~~~v~vn~a~V~~~d-i~a~NGvIHvID~VL~P~~ 163 (163)
T 1nyo_A 95 TSILTYHVVAGQT--SPANVVGTRQTLQGASVT-VTGQGNSLKVGNADVVCGG-VSTANATVYMIDSVLMPPA 163 (163)
T ss_dssp HHHHHHTEEESCC--CTTTSCEEEECTTSSEEE-EEECSSCEEETTEECSSBC-CCCSSEEEBCBSSCCCCCC
T ss_pred HHHHHhceECCEE--cHHHhCCccccCCCCEEE-EEEECCEEEEeccEEEECc-eEcCCEEEEEECcEeCCCC
Confidence 9999999999999 999887678899999888 5 678999999998 9999999999999999984
No 5
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=99.80 E-value=4.9e-20 Score=182.30 Aligned_cols=129 Identities=13% Similarity=0.224 Sum_probs=106.2
Q ss_pred CCHHHHHhcCCCcHHHHHHHHHcCcHHHHHhccCCCCeEEEEeCchhhhcCCCC----HHHHHHhcCccCHHHHHHHHhc
Q 043668 39 SNSVLLALLDSHYTELAELVEKALLLQTLEQAVATHNVTIFAPKNEAFERDLLD----PEFKRFLLQPANIKSLQNLLLF 114 (415)
Q Consensus 39 ~niv~~l~~~~~lS~f~~~L~~agL~~~L~~~~~~~~~TVFAPtN~AF~~~~L~----~~~~~~L~~p~n~~~L~~lL~y 114 (415)
.++.+.+..+++||+|.++++++|+.+.|++ ..++||||||+|+||++ +. .+..+.|. +...+.|+++|+|
T Consensus 159 ~ti~~~l~~~~~fs~~~~~l~~~gl~~~L~~--~~~~~TvFAPtd~Af~~--l~~~~~~~~~~~l~-~~~~~~l~~iL~y 233 (324)
T 1o70_A 159 TTVLGKLESDPMMSDTYKMGKFSHFNDQLNN--TQRRFTYFVPRDKGWQK--TELDYPSAHKKLFM-ADFSYHSKSILER 233 (324)
T ss_dssp SCHHHHHHHCGGGHHHHHHTTTTTTTGGGGC--SSSEEEEEEECHHHHHH--HHHHCHHHHHHHTS-GGGHHHHHHHHHT
T ss_pred hhHHHHhhcCchHHHHHHHHHhhCHHHHhCC--CCCCeEEEEeChHHHHh--hhhhchhHHHHHhc-cCcHHHHHHHHHh
Confidence 5799999999999999999999999999983 36899999999999999 53 33444443 3334589999999
Q ss_pred ccccc--ccccchhhhhh--------ccccCCCCceeEE--------EEec----ceEEEccCceEeCCcEEEEeCcccc
Q 043668 115 HIIPR--KIAFGSEEWSA--------RHKTLAGDGVDEL--------FPLN----LAKVVHPDSITRPDGTIHGISQLMV 172 (415)
Q Consensus 115 HIv~g--~~~l~s~~L~~--------~~~TL~G~~l~~i--------v~Vn----~a~Vv~~D~I~a~NGVIHvID~VLi 172 (415)
|++++ .+ +.++|.+ .++|++ +.+. + +++| +++|+.+| |.++|||||+||+||+
T Consensus 234 Hvv~~~~~~--~~~~l~~~~~~~~~~~~~Tl~-~~l~-v~~~~~~~~v~v~~~~~~a~v~~~d-i~~~NGvIHvID~VL~ 308 (324)
T 1o70_A 234 HLAISDKEY--TMKDLVKFSQESGSVILPTFR-DSLS-IRVEEEAGRYVIIWNYKKINVYRPD-VECTNGIIHVIDYPLL 308 (324)
T ss_dssp TEEEESSCC--CHHHHHHHHHHSSSEEEECSS-SEEE-EEEEEETTEEEEEETTEEEEEEEEE-EEETTEEEEEESSCSC
T ss_pred cEeCCcceE--cHHHHhhhccCCCeeeeeccC-CcEE-EEEEecCCEEEEEecCceeEEEEcc-cccCCCeEEEeceeec
Confidence 99998 66 7788875 288988 6666 3 3455 78999998 9999999999999999
Q ss_pred Cccch
Q 043668 173 PRSVQ 177 (415)
Q Consensus 173 P~s~~ 177 (415)
|++..
T Consensus 309 P~~~~ 313 (324)
T 1o70_A 309 EEKDV 313 (324)
T ss_dssp CTTTT
T ss_pred CCccc
Confidence 99653
No 6
>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A
Probab=99.76 E-value=1.3e-19 Score=158.69 Aligned_cols=123 Identities=22% Similarity=0.374 Sum_probs=87.8
Q ss_pred HHHHHHHcCCcchHHHHHHhhhhhhhhhcccccCCceeEEEecCcHHHhcCCccC---C-C--ChhhHHHHHHHhhcccc
Q 043668 260 FIKTLVHYGGYNEMADILVNLTSLASEIGKLVSEGYVLTILAPNDEAMVKLTTDQ---L-S--EPGAAEQIMYYHMVAEY 333 (415)
Q Consensus 260 ~~~~L~~~gg~~~fa~ll~n~t~~~~~~~~l~~~~~~~TvfaPtd~Af~~l~~~~---l-~--~~~~~~~il~yH~vp~~ 333 (415)
++..|...+.|++|.+++... .+.. .|.+. +++|||||+|+||++|+.+. | . +++.++++|+||++|++
T Consensus 5 i~~~l~~~~~~s~f~~~l~~a-gl~~---~L~~~-~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~~~l~~lL~yHvv~~~ 79 (137)
T 1w7d_A 5 IVETATGAGSFTTLLTAAEAA-GLVD---TLKGD-GPFTVFAPTDAAFAALPEGTVEDLLKPENKEKLTEILTYHVVPGE 79 (137)
T ss_dssp TGGGGGSCSSSTTTTHHHHHT-TTHH---HHTSS-SCEEEECCCHHHHTTSTTTHHHHTTSHHHHHHHHHHHHHHEEESC
T ss_pred HHHHHHhCCCHHHHHHHHHHc-CCHH---HHcCC-CCEEEEEECHHHHHHcCHhHHHHHhCcCCHHHHHHHHHhhEeCcE
Confidence 456666777888888776532 2222 23333 47999999999999998653 3 2 56778999999999999
Q ss_pred cchhhcccceeEEecCC-eEEEcCC-CC-CCceEEeCCccc-cCCceEEEEecccccCCC
Q 043668 334 QTEESMYNAVVAVEADG-SVEFGSG-GG-NGAAYLFDPDIY-TDGRISVQGIDGVLFPVK 389 (415)
Q Consensus 334 ~~~~~l~~~~~~~~~~g-~v~~~~g-~~-~~~~~~~~~~i~-~dg~iaV~~iD~VL~P~~ 389 (415)
++.+.+.+.....+.+| .+.+... |. .+.+.++..||. .+|. ||+||+||+|+.
T Consensus 80 ~~~~~l~~~~~~~tl~G~~l~v~~~~gv~vn~a~v~~~di~~~NGv--IHvID~VL~P~s 137 (137)
T 1w7d_A 80 VMSSDLTEGMTAETVEGGALTVTLEGGPKVNGVSISQPDVDASNGV--IHVIDGVLMPGA 137 (137)
T ss_dssp CCTTTSCSSEEEECTTSCEEEEECTTSCEETTEECSBCCCBCSSSE--EEBCSSCCSSCC
T ss_pred EcHHHhcCCCeeeccCCceEEEEecCCEEEeCcEEEECCeecCCeE--EEEECeeeCCCC
Confidence 98888876554455555 5666442 22 234677888996 5584 999999999973
No 7
>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A
Probab=99.73 E-value=1.5e-18 Score=151.12 Aligned_cols=121 Identities=21% Similarity=0.277 Sum_probs=85.6
Q ss_pred HHHHHHHHcCCcchHHHHHHhhhhhhhhhcccccCCceeEEEecCcHHHhcCCccCC----CChhhHHHHHHHhhccccc
Q 043668 259 DFIKTLVHYGGYNEMADILVNLTSLASEIGKLVSEGYVLTILAPNDEAMVKLTTDQL----SEPGAAEQIMYYHMVAEYQ 334 (415)
Q Consensus 259 ~~~~~L~~~gg~~~fa~ll~n~t~~~~~~~~l~~~~~~~TvfaPtd~Af~~l~~~~l----~~~~~~~~il~yH~vp~~~ 334 (415)
+++..|...+.|++|.+++... .+.. .|. ..+++|||||+|+||++|+.+.+ .+++.++++|+||++|+.+
T Consensus 3 ti~~~l~~~~~fs~~~~~l~~a-gl~~---~L~-~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~l~~iL~yHvv~~~~ 77 (132)
T 2vxp_A 3 TVMDVLKGDNRFSMLVAAIQSA-GLTE---TLN-REGVYTVFAPTNEAFRALPPRERSRLLGDAKELANILKYHIGDEIL 77 (132)
T ss_dssp CHHHHHTTSTTCHHHHHHHHHH-TCHH---HHH-SSCCEEEEEECHHHHHHSCHHHHHHHHTCHHHHHHHHHHSBBSSCC
T ss_pred cHHHHHHcCCCHHHHHHHHHHc-CcHH---HHc-CCCCEEEEeECHHHHHhhCHHHHHHHhcCHHHHHHHHHhcCcCcee
Confidence 4678888889999999887542 2222 233 34479999999999999987643 4788899999999999988
Q ss_pred chhhcccceeEEecCC-eEEEcC-CC-C-CCceEEeCCccc-cCCceEEEEeccccc
Q 043668 335 TEESMYNAVVAVEADG-SVEFGS-GG-G-NGAAYLFDPDIY-TDGRISVQGIDGVLF 386 (415)
Q Consensus 335 ~~~~l~~~~~~~~~~g-~v~~~~-g~-~-~~~~~~~~~~i~-~dg~iaV~~iD~VL~ 386 (415)
..+.+.+.....+.+| .+.+.. ++ . .+.+.++..||. .+| +||+||+||+
T Consensus 78 ~~~~l~~~~~~~tl~G~~l~v~~~~~~v~vn~a~v~~~di~a~NG--vIHvID~VLl 132 (132)
T 2vxp_A 78 VSGGIGALVRLKSLQGDKLEVSLKNNVVSVNKEPVAEPDIMATNG--VVHVITNVLQ 132 (132)
T ss_dssp CSTTCSSCEEEEBTTSSEEEEEEETTEEEESSCBEEEEEEEETTE--EEEEESSCC-
T ss_pred ehhhccCCceEecCCCCEEEEEEeCCEEEEeccEEEEcceecCCE--EEEEECcEeC
Confidence 7777655444444455 455533 21 1 234667788885 558 5999999996
No 8
>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1
Probab=99.70 E-value=4.4e-18 Score=153.66 Aligned_cols=124 Identities=23% Similarity=0.275 Sum_probs=89.8
Q ss_pred HHHHHHHHHHcCCcchHHHHHHh----hhhhhhhhcccccCCceeEEEecCcHHHhcCCccC---C-CChhhHHHHHHHh
Q 043668 257 VKDFIKTLVHYGGYNEMADILVN----LTSLASEIGKLVSEGYVLTILAPNDEAMVKLTTDQ---L-SEPGAAEQIMYYH 328 (415)
Q Consensus 257 ~~~~~~~L~~~gg~~~fa~ll~n----~t~~~~~~~~l~~~~~~~TvfaPtd~Af~~l~~~~---l-~~~~~~~~il~yH 328 (415)
.+++++.|.+.+.|++|.+++.+ .+.+. ..|.+. + +|||||+|+||++|+.+. | .+++.+++||+||
T Consensus 27 ~~~i~~~l~~~~~~s~f~~~l~~~~~~~agl~---~~L~~~-g-~TvFAPtn~AF~~l~~~~~~~L~~~~~~L~~iL~yH 101 (163)
T 1nyo_A 27 QDPVAVAASNNPELTTLTAALSGQLNPQVNLV---DTLNSG-Q-YTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYH 101 (163)
T ss_dssp HSCHHHHHTTSTTTHHHHHHHHSSSCTTCCCH---HHHTSS-S-EEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHHHT
T ss_pred CcCHHHHHHhCCCHHHHHHHHHhccccccCHH---HHhCCC-C-cEEEEECHHHHHhccHHHHHHHhcCHHHHHHHHHhc
Confidence 35688888889999999998862 22222 234333 3 999999999999998643 3 3667899999999
Q ss_pred hcccccchhhcccceeEEecCC-eEEEcC--CCC-CCceEEeCCcccc-CCceEEEEecccccCCC
Q 043668 329 MVAEYQTEESMYNAVVAVEADG-SVEFGS--GGG-NGAAYLFDPDIYT-DGRISVQGIDGVLFPVK 389 (415)
Q Consensus 329 ~vp~~~~~~~l~~~~~~~~~~g-~v~~~~--g~~-~~~~~~~~~~i~~-dg~iaV~~iD~VL~P~~ 389 (415)
++|++++.++|.+ ...+.+| .+.+.. ++. .+.+.++..||.+ +| +||+||+||+|+.
T Consensus 102 vv~g~~~~~~l~g--~~~Tl~G~~l~v~~~~~~v~vn~a~V~~~di~a~NG--vIHvID~VL~P~~ 163 (163)
T 1nyo_A 102 VVAGQTSPANVVG--TRQTLQGASVTVTGQGNSLKVGNADVVCGGVSTANA--TVYMIDSVLMPPA 163 (163)
T ss_dssp EEESCCCTTTSCE--EEECTTSSEEEEEECSSCEEETTEECSSBCCCCSSE--EEBCBSSCCCCCC
T ss_pred eECCEEcHHHhCC--ccccCCCCEEEEEEECCEEEEeccEEEECceEcCCE--EEEEECcEeCCCC
Confidence 9999998888863 3344445 455543 211 2347788889965 48 5999999999973
No 9
>2l1a_A Formin-C, @; fruiting BODY formation, actin binding protein; NMR {Dictyostelium discoideum}
Probab=6.46 E-value=2.4e+02 Score=22.36 Aligned_cols=20 Identities=45% Similarity=0.634 Sum_probs=17.8
Q ss_pred CCCccccchhHHHHHHHHHH
Q 043668 247 PRDHFDGHIQVKDFIKTLVH 266 (415)
Q Consensus 247 ~~~~~~~~~~~~~~~~~L~~ 266 (415)
..|.||||..+||-++.|+.
T Consensus 35 vshifdg~tavkdhikvllt 54 (107)
T 2l1a_A 35 VSHIFDGETAVKDHIKVLLT 54 (107)
T ss_dssp EEEEECSSSBHHHHHHHHHH
T ss_pred eeeeeccchHHHHHHHHHHH
Confidence 45899999999999999875
No 10
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=4.26 E-value=3.4e+02 Score=18.36 Aligned_cols=25 Identities=8% Similarity=-0.045 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHcCCcchHHHHHHhh
Q 043668 256 QVKDFIKTLVHYGGYNEMADILVNL 280 (415)
Q Consensus 256 ~~~~~~~~L~~~gg~~~fa~ll~n~ 280 (415)
-|++-+..+++.-.-++|.++|+|.
T Consensus 5 tFTsdyS~~l~~~aak~fv~wL~~~ 29 (39)
T 1jrj_A 5 TFTSDLSKQMEEEAVRLFIEWLKNG 29 (39)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHcC
Confidence 4555666666666667888887653
Done!