BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043671
         (525 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
           Aminopeptidase N (Apn) As A Target For Anticancer Drug
           Development
 pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
           Aminopeptidase N (Apn) As A Target For Anticancer Drug
           Development
          Length = 780

 Score = 28.9 bits (63), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 9/14 (64%), Positives = 12/14 (85%)

Query: 236 QTFDIVFPDWSFWG 249
           +T D +FP+WSFWG
Sbjct: 297 KTMDTLFPEWSFWG 310


>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
           From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
           Three Different Conformations
 pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
           From Thermoplasma Acidophilum
 pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
           From Thermoplasma Acidophilum
          Length = 780

 Score = 28.9 bits (63), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 9/14 (64%), Positives = 12/14 (85%)

Query: 236 QTFDIVFPDWSFWG 249
           +T D +FP+WSFWG
Sbjct: 297 KTMDTLFPEWSFWG 310


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,789,198
Number of Sequences: 62578
Number of extensions: 793872
Number of successful extensions: 1484
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1482
Number of HSP's gapped (non-prelim): 9
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)