Query 043671
Match_columns 525
No_of_seqs 268 out of 832
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 07:13:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2458 Endoplasmic reticulum 100.0 2E-129 4E-134 1010.0 33.4 481 35-523 38-528 (528)
2 PF05686 Glyco_transf_90: Glyc 100.0 2E-115 4E-120 923.0 34.5 395 120-515 1-395 (395)
3 smart00672 CAP10 Putative lipo 100.0 4E-68 8.7E-73 532.6 21.7 248 196-445 1-256 (256)
4 PF13524 Glyco_trans_1_2: Glyc 97.5 0.00027 5.9E-09 59.3 7.3 82 344-431 9-90 (92)
5 PRK10307 putative glycosyl tra 66.0 22 0.00048 37.6 8.0 85 346-437 320-407 (412)
6 COG4641 Uncharacterized protei 64.5 21 0.00046 38.3 7.3 73 345-423 275-347 (373)
7 PRK15427 colanic acid biosynth 63.2 35 0.00076 36.6 9.0 87 346-436 317-404 (406)
8 cd03801 GT1_YqgM_like This fam 63.0 29 0.00063 33.9 7.7 84 345-432 287-370 (374)
9 cd04962 GT1_like_5 This family 59.7 50 0.0011 33.6 9.0 89 342-436 281-369 (371)
10 cd05844 GT1_like_7 Glycosyltra 55.0 44 0.00095 34.0 7.7 82 346-431 283-364 (367)
11 TIGR03087 stp1 sugar transfera 54.1 59 0.0013 34.2 8.7 83 345-435 310-394 (397)
12 cd03808 GT1_cap1E_like This fa 53.8 63 0.0014 31.6 8.4 81 345-429 275-355 (359)
13 PRK15484 lipopolysaccharide 1, 53.1 47 0.001 35.1 7.7 82 350-438 294-378 (380)
14 cd03794 GT1_wbuB_like This fam 51.9 48 0.001 32.9 7.2 80 345-429 311-391 (394)
15 cd03807 GT1_WbnK_like This fam 51.8 73 0.0016 31.3 8.5 78 345-429 280-358 (365)
16 TIGR03088 stp2 sugar transfera 50.2 91 0.002 32.1 9.2 85 346-435 285-370 (374)
17 cd03822 GT1_ecORF704_like This 49.4 88 0.0019 31.2 8.7 79 345-429 281-359 (366)
18 TIGR02149 glgA_Coryne glycogen 49.4 60 0.0013 33.5 7.7 75 351-429 298-378 (388)
19 TIGR02472 sucr_P_syn_N sucrose 49.2 41 0.00089 36.3 6.6 85 342-435 351-438 (439)
20 cd03825 GT1_wcfI_like This fam 46.7 99 0.0022 31.1 8.7 79 346-429 277-356 (365)
21 cd03795 GT1_like_4 This family 45.6 53 0.0011 33.0 6.5 77 347-427 279-356 (357)
22 cd03817 GT1_UGDG_like This fam 44.9 1E+02 0.0022 30.6 8.3 72 346-422 291-362 (374)
23 cd03818 GT1_ExpC_like This fam 44.5 1.1E+02 0.0024 32.1 9.0 75 349-427 316-390 (396)
24 PHA03048 IMV membrane protein; 42.9 27 0.00058 30.1 3.1 23 31-53 45-67 (93)
25 PF03016 Exostosin: Exostosin 42.4 1E+02 0.0023 30.8 8.1 127 236-382 151-284 (302)
26 cd04955 GT1_like_6 This family 42.3 92 0.002 31.3 7.7 80 346-433 281-360 (363)
27 cd03792 GT1_Trehalose_phosphor 42.2 1E+02 0.0022 32.0 8.1 80 349-434 289-368 (372)
28 cd03799 GT1_amsK_like This is 41.5 88 0.0019 31.3 7.4 78 346-427 274-351 (355)
29 PF05767 Pox_A14: Poxvirus vir 40.4 32 0.0007 29.7 3.2 25 31-55 46-70 (92)
30 PHA02898 virion envelope prote 39.8 32 0.0007 29.5 3.1 24 31-54 46-69 (92)
31 PHA02680 ORF090 IMV phosphoryl 38.0 36 0.00077 29.2 3.1 23 31-53 47-69 (91)
32 PF00534 Glycos_transf_1: Glyc 37.2 53 0.0011 29.7 4.5 69 345-417 104-172 (172)
33 cd03805 GT1_ALG2_like This fam 34.0 84 0.0018 32.4 5.9 80 342-428 310-389 (392)
34 PRK05749 3-deoxy-D-manno-octul 29.8 65 0.0014 34.3 4.4 68 350-421 337-406 (425)
35 cd03821 GT1_Bme6_like This fam 29.5 2.3E+02 0.0049 28.0 8.0 76 346-428 294-370 (375)
36 cd01324 cbb3_Oxidase_CcoQ Cyto 27.9 72 0.0016 24.2 3.0 19 35-53 14-32 (48)
37 cd03798 GT1_wlbH_like This fam 26.7 2.2E+02 0.0047 27.9 7.2 85 345-435 290-374 (377)
38 TIGR03449 mycothiol_MshA UDP-N 26.4 3.2E+02 0.007 28.4 8.8 80 347-431 316-395 (405)
39 cd03800 GT1_Sucrose_synthase T 23.4 1.9E+02 0.004 29.6 6.2 76 350-429 319-394 (398)
40 cd03823 GT1_ExpE7_like This fa 23.3 2E+02 0.0044 28.3 6.4 71 345-420 275-346 (359)
41 PF08113 CoxIIa: Cytochrome c 23.2 78 0.0017 22.4 2.2 19 39-57 9-27 (34)
42 cd04946 GT1_AmsK_like This fam 22.5 2.9E+02 0.0062 29.5 7.6 79 346-429 323-403 (407)
43 cd03814 GT1_like_2 This family 22.4 3.3E+02 0.0071 26.9 7.7 78 346-428 279-356 (364)
44 cd03809 GT1_mtfB_like This fam 22.0 2.6E+02 0.0055 27.8 6.8 74 347-427 286-359 (365)
45 cd03813 GT1_like_3 This family 20.1 1.8E+02 0.0039 31.8 5.6 80 347-429 384-468 (475)
No 1
>KOG2458 consensus Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif [General function prediction only]
Probab=100.00 E-value=1.7e-129 Score=1010.02 Aligned_cols=481 Identities=54% Similarity=1.038 Sum_probs=434.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccCCCCCCcccCCCCCCCCCCcc-----ccCCCCcccccccCCC---CCCCCCCCCC
Q 043671 35 ALFAFIFLLLVGALISTRLLDSTALGGGTNKKLRDRKGQTDAPDIT-----KKHYNKTEYPLKCTDG---NNTKTCPGTY 106 (525)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~c~~~---~~~~~cp~~~ 106 (525)
.++.+++++++||+++ ++|.+...+....+..+... ++..... +..+....+.+.|+.. +.+.+||++.
T Consensus 38 v~~~~~~~~l~~af~s--~~d~s~~~~~~~~~~~~~~~-~t~~~~P~~~~~~~~s~~~~~~l~cs~~s~~~~~~~~p~~~ 114 (528)
T KOG2458|consen 38 VVLSARYFYLQGVFSS--KLDFSPAGEKKFKVKVSRTP-TTRIPVPKPLDRKDGSFLRRYRLYCSLFSGLKREVLCPSSH 114 (528)
T ss_pred HHHHHHHHHHHhcccc--eecchhhcccceEEEeccCC-cccccCCcccccccCCcchhhhhhhhhhhcccccccccccc
Confidence 4555557888998777 88888876554332221110 0000110 1122244566899822 5578899874
Q ss_pred CCC-CCCCCCCCCCCCCCCCcchhhHHHhhhhhhhCCCCHHHHHHHhccCcEEEEEECCEEEEEcccccccchhHHHHHH
Q 043671 107 PTS-YTPEEDHDSPLAPTCPDYFRWIHEDLRPWARTGITREMVERANETANFRLVIVKGRAYVKRNIKAFQSRDTFTLWG 185 (525)
Q Consensus 107 ~~~-~~~~~~~~~~~~~~Cpd~F~~I~~DL~Pw~~~GIt~~~ve~a~~~~~~rv~I~nGrlyv~~~~~~~~sR~~~tl~~ 185 (525)
... .....++...+..+|||||+|||+||.||+++|||++++++|++.+++|++|++|++||+.|++++|+|++||+||
T Consensus 115 ~~~s~~~~~~~~~~~~~tCPDyfrWIheDL~Pw~etgItre~~erak~~a~fr~vI~~g~~yv~~Y~ks~qtrd~ft~wg 194 (528)
T KOG2458|consen 115 VSKSPYILKNPVYHESCTCPDYFRWIHEDLCPWRETGITREMAERAKRKAHFRLVIKEGRLYVENYRKSIQTRDVFTIWG 194 (528)
T ss_pred cccCccccCCCCCCCCCCCCcHHHHHHHhcCccccccchHHHhhhhhcccceeeeeecCceehhhhhhhhcccchHHHHH
Confidence 333 1111234446788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCeEEEEecCCCccccccCCCCCCCCCCCCeeeeccCCCCCceecCCCCCcCCCcccccchHHHHHHH
Q 043671 186 ILQLLRRYPGKIPDLDLMFDCVDWPILLKSNYSVPGAPAPPPLFRYCANDQTFDIVFPDWSFWGWPEVNIKSWGKILKDL 265 (525)
Q Consensus 186 ll~llr~~p~~LPDvEf~fn~~D~P~v~~~d~~G~~~~~~~PlFs~ck~~~~~DIl~Pd~~fwgwpe~~i~~w~~~~~~l 265 (525)
|+|||++|||+|||+||||||+|+|.|.+.+|+| + .+|+|||+||++.++.||+||||+||||+|.||++|+.+..++
T Consensus 195 ilqLlr~ypgklPDlElmf~~~D~P~v~~~~~~~-~-~~ppPlF~yCg~~~s~DIVfPdwsfwgw~e~nik~w~~~~~~~ 272 (528)
T KOG2458|consen 195 ILQLLRTYPGKLPDLELMFNCGDWPLVRKKDFQG-T-PPPPPLFSYCGSSESLDIVFPDWSFWGWAEVNIKPWEKLLEDI 272 (528)
T ss_pred HHHHHHhcCCCCCCceeeeecCCccccchhhccC-C-CCCCCeEeecCCcccccccccCccccCChhhcccccchHHHHH
Confidence 9999999999999999999999999999999988 3 3899999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCCcCCceEeeeCCCCc-chHHHHHHhhhhcCCCcceeeeecchhhhhhcCCCCCChhhhccccEEEeecCC
Q 043671 266 EEGNRRMNWTDREPYAYWKGNPVVA-SSRQDLMKCNVSEGQEWNARLYVQDWKREKQKGYKQSDLASQCKHRFKIYIEGS 344 (525)
Q Consensus 266 ~~~~~~~pW~~K~pkafWRG~~t~~-~~R~~Lv~~~~s~~~~~~a~v~~~~w~~e~~~G~~~~~l~d~c~yKYli~vDG~ 344 (525)
.+|+.+.+|.+|.++||||||+++. +.|+.|+.||++.-.+|+++++.|+|.+|++.||+++++++||+|||+|||||.
T Consensus 273 ~egn~~~~W~~r~~yAywrGnp~v~e~~rl~ll~cn~s~~~d~~~~~y~qdw~~E~~~G~k~s~l~dqc~hrYkIyiEG~ 352 (528)
T KOG2458|consen 273 VEGNKRPKWKNKNPYAYWRGNPSVAERLRLDLLSCNNSELVDANATLYFQDWSKESKLGFKQSNLFDQCKHRYKIYIEGT 352 (528)
T ss_pred HhhccCCCcccCCceeEecCCCCccccchhhhhhcCCchhhchhhhhHHHhhhhhhhccccccchhhhcceeeEEEEeee
Confidence 9999999999999999999999987 899999999988888999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhch
Q 043671 345 AWSVSEKYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELKM 424 (525)
Q Consensus 345 s~S~RlkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~ 424 (525)
+||+|+||||+|+||||++++.|+|||++.|+||+|||||+.+ |+||++||+|+|+|+++||.||++|++|+++.|.|
T Consensus 353 awsvs~kYilacDS~tL~v~p~YydfF~r~l~P~~HYwPIk~~--c~slkfaV~Wgn~h~~~Aq~Igk~gs~f~r~~L~m 430 (528)
T KOG2458|consen 353 AWSVSEKYILACDSMTLKVKPEYYDFFYRGLQPWKHYWPIKSN--CRSLKFAVDWGNNHDEEAQKIGKEGSEFARKNLKM 430 (528)
T ss_pred eeeeecceeeecceeEEeecchHHHHHhhcccchhcccccccc--hhHHHHHHHhcccChHHHHHHHHHHHHHHHHhcch
Confidence 9999999999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhcccCCCCCCCceeeccccccccCchhhhhHhhhhhccCCCCCCCCCCCCCCChhHHHHHHHHh
Q 043671 425 DYVYDYMFHLLNQYSKLFRYQPTIPTGAVEYCAETMACPEEGMARKLMEESLEQSPKETSPCTLPPPYDPSSLYDVLREK 504 (525)
Q Consensus 425 ~~v~~Y~~~LL~eYAkL~~~kP~~~~~a~e~c~e~~~c~~~g~~~~~~~~s~~~~p~~~~pc~~~~~~~~~~~~~~~~~~ 504 (525)
++|||||||||+|||+||+|||++|+||+|||+|+|+|+++|++|+||+||+|+ |+++.||.|||||++.+|++|++||
T Consensus 431 ~~vYdYmfhllqeYakL~k~kpevp~~a~evc~~~m~cp~~g~~r~~m~~slv~-ps~~~pC~~p~p~~~~~l~~~~~~k 509 (528)
T KOG2458|consen 431 DYVYDYMFHLLQEYAKLQKFKPEVPEGATEVCPETMACPEDGRERKFMDESLVM-PSDTAPCEMPPPYDPNELKEFLEKK 509 (528)
T ss_pred hhHHHHHHHHHHHHHHHhhcCCcCCCCccccCchhccCCccchhhhhhhhcccc-ccccCcccCCCCCCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhh
Q 043671 505 ENSILQVESWVKAYWENQT 523 (525)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~ 523 (525)
+++++|||+||++||++|+
T Consensus 510 ~~~~~~ve~we~~y~~~~~ 528 (528)
T KOG2458|consen 510 ESTTRQVEKWENKYWQKQN 528 (528)
T ss_pred HhHHHHHHHHHHHHHhccC
Confidence 9999999999999999875
No 2
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=100.00 E-value=2e-115 Score=923.04 Aligned_cols=395 Identities=51% Similarity=1.019 Sum_probs=381.7
Q ss_pred CCCCCCcchhhHHHhhhhhhhCCCCHHHHHHHhccCcEEEEEECCEEEEEcccccccchhHHHHHHHHHHHHhcCCCCCC
Q 043671 120 LAPTCPDYFRWIHEDLRPWARTGITREMVERANETANFRLVIVKGRAYVKRNIKAFQSRDTFTLWGILQLLRRYPGKIPD 199 (525)
Q Consensus 120 ~~~~Cpd~F~~I~~DL~Pw~~~GIt~~~ve~a~~~~~~rv~I~nGrlyv~~~~~~~~sR~~~tl~~ll~llr~~p~~LPD 199 (525)
++.+||+||+||++||+||+++|||+++|+++++.+++|++|+||||||+.+++++++|++|++|+|++|++++|++|||
T Consensus 1 ~~~~cp~~f~~I~~dl~~w~~~gIt~~~l~~~~~~~~~r~~I~~g~lYv~~~~~~~~tR~~~t~~~l~~ll~~~p~~lPD 80 (395)
T PF05686_consen 1 SNSQCPDYFRQIHRDLAPWRETGITREMLDRARRRAMFRYVIKDGRLYVESYREMFQTRDMFTLWGLLQLLRRYPGRLPD 80 (395)
T ss_pred CCCCCCccHHHHHHHHHHhhcCCCCHHHHHHHHhcCceEEEEECCEEEEEecccccchhHHHHHHHHHHHHHhCcCCCCC
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCccccccCCCCCCCCCCCCeeeeccCCCCCceecCCCCCcCCCcccccchHHHHHHHhhccCCCCCCCcCC
Q 043671 200 LDLMFDCVDWPILLKSNYSVPGAPAPPPLFRYCANDQTFDIVFPDWSFWGWPEVNIKSWGKILKDLEEGNRRMNWTDREP 279 (525)
Q Consensus 200 vEf~fn~~D~P~v~~~d~~G~~~~~~~PlFs~ck~~~~~DIl~Pd~~fwgwpe~~i~~w~~~~~~l~~~~~~~pW~~K~p 279 (525)
|||+||++|+|.+.+.++.|.+. +++|||+|||+.++.|||||||+||||||++|++|+..+..+.+++..+||++|++
T Consensus 81 ~Ef~~n~~D~P~~~~~~~~~~~~-~~~Pifs~~~~~~~~DIl~Pd~~fwgw~e~~i~~w~~~~~~i~~~~~~~pW~~K~p 159 (395)
T PF05686_consen 81 VEFMFNCDDWPVVRKDDYQGPSA-PPPPIFSYCKSSDTADILFPDFSFWGWPEINIGPWDEDRKDIKEGNERVPWEDKKP 159 (395)
T ss_pred eeEEeECCCCccccccccCCCCc-chhhheeeccccCcCccccCCccccccccccCCchHHHhhhhhccccCCChhhccc
Confidence 99999999999998877665443 78999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeeeCCCCcchHHHHHHhhhhcCCCcceeeeecchhhhhhcCCCCCChhhhccccEEEeecCCccchhhHHHHhcCCe
Q 043671 280 YAYWKGNPVVASSRQDLMKCNVSEGQEWNARLYVQDWKREKQKGYKQSDLASQCKHRFKIYIEGSAWSVSEKYILACDSV 359 (525)
Q Consensus 280 kafWRG~~t~~~~R~~Lv~~~~s~~~~~~a~v~~~~w~~e~~~G~~~~~l~d~c~yKYli~vDG~s~S~RlkyLLac~Sv 359 (525)
+|||||+++++..|++|++|+++++.+|+|+++.++|..+...+++.+++++||+|||+||+||++||+||||||+||||
T Consensus 160 ~afWRG~~~~~~~R~~L~~~~~~~~~~~~a~i~~~d~~~~~~~~~~~~~l~~~~~yKYli~idG~~~S~RlkylL~c~Sv 239 (395)
T PF05686_consen 160 KAFWRGSPTVAETRQRLVRCSRSHPDLWDARITKQDWDKEYKPGFKHVPLEDQCKYKYLIYIDGNAWSGRLKYLLACNSV 239 (395)
T ss_pred ceEECCCcCCCcchhHHHHHhccCCccceeeechhhhhhhccccccccCHHHHhhhheeecCCCceeehhHHHHHcCCce
Confidence 99999999988889999999988888999999999998777788889999999999999999999999999999999999
Q ss_pred eeeecCccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHH
Q 043671 360 TLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELKMDYVYDYMFHLLNQYS 439 (525)
Q Consensus 360 VLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~~~v~~Y~~~LL~eYA 439 (525)
||++++.|+|||+++|+||+|||||+.+.+|+||+++|+|+++||++||+||++|++|++++|++++++|||++||+|||
T Consensus 240 Vl~~~~~~~e~f~~~L~P~vHYVPV~~~~d~sdL~~~v~w~~~~~~~A~~IA~~g~~f~~~~L~~~~~~~Y~~~LL~eYa 319 (395)
T PF05686_consen 240 VLKVKSPYYEFFYRALKPWVHYVPVKRDDDLSDLEEKVEWLNAHDDEAQRIAENGQRFAREYLTMEDVYCYWRRLLLEYA 319 (395)
T ss_pred EEEeCCcHHHHHHhhhcccccEEEeccccchhhHHHHhhhcccChHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999955589999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCCCceeeccccccccCchhhhhHhhhhhccCCCCCCCCCCCCCCChhHHHHHHHHhhhHHHHHHHHH
Q 043671 440 KLFRYQPTIPTGAVEYCAETMACPEEGMARKLMEESLEQSPKETSPCTLPPPYDPSSLYDVLREKENSILQVESWV 515 (525)
Q Consensus 440 kL~~~kP~~~~~a~e~c~e~~~c~~~g~~~~~~~~s~~~~p~~~~pc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (525)
+|++|+|+++++++|||+|+|+|.++|.+|+||+||+|++|+++.||+|||||+|++|++|++||+|+++|||+||
T Consensus 320 ~l~~~~p~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (395)
T PF05686_consen 320 KLLRFKPTVPPGAEEVCPESMACPAEGRERKFMMESMVKSPSDTDPCTMPPPYDPEELKEFLERKENVIRQVEKWE 395 (395)
T ss_pred HHhCCCCcCCCCceEechhhcCCCcccchhhHHHHhhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
No 3
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=100.00 E-value=4e-68 Score=532.61 Aligned_cols=248 Identities=58% Similarity=1.146 Sum_probs=229.7
Q ss_pred CCCCeEEEEecCCCccccccCCCCCCCCCCCCeeeeccCCCCCceecCCCCCc-CCCcccccchHHHHHHHhhccCCCCC
Q 043671 196 KIPDLDLMFDCVDWPILLKSNYSVPGAPAPPPLFRYCANDQTFDIVFPDWSFW-GWPEVNIKSWGKILKDLEEGNRRMNW 274 (525)
Q Consensus 196 ~LPDvEf~fn~~D~P~v~~~d~~G~~~~~~~PlFs~ck~~~~~DIl~Pd~~fw-gwpe~~i~~w~~~~~~l~~~~~~~pW 274 (525)
+|||+||+||++|+|.+.+.++.+.+...++||||+||..++.|||||||+|| ||||.++++|+..+.++.+++.++||
T Consensus 1 ~lPD~ef~~n~~D~p~~~~~~~~~~~~~~~~Pifs~~k~~~~~DIl~P~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~pW 80 (256)
T smart00672 1 RVPDLELMFNCRDWPLINKKSFASYNQHAPPPLFSYCGSDEYLDIVFPDWSFWAGWPEVNGRPWDKDLMELEEGNKRTKW 80 (256)
T ss_pred CCCCeeeeeeCCCccccccCCCCCcccCCCCCeEEecCCCCCCceEecCHHHhCCCccccCcchHHHHHHHHhhhcCCCc
Confidence 58999999999999998876544332346899999999999999999999999 99999999999999999988899999
Q ss_pred CCcCCceEeeeCCCCcchHHHHHHhhhhcCCCcceeeeecchh-----hhhhcCCCCCChhhhccccEEEeecCCccchh
Q 043671 275 TDREPYAYWKGNPVVASSRQDLMKCNVSEGQEWNARLYVQDWK-----REKQKGYKQSDLASQCKHRFKIYIEGSAWSVS 349 (525)
Q Consensus 275 ~~K~pkafWRG~~t~~~~R~~Lv~~~~s~~~~~~a~v~~~~w~-----~e~~~G~~~~~l~d~c~yKYli~vDG~s~S~R 349 (525)
++|+++|||||+++++.+|++|++++++++..|||+++.++|. .+...+++.+++++||+|||+|++||++||+|
T Consensus 81 ~~K~~~a~WRG~~~~~~~R~~Lv~~~~~~p~~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yKyli~~dG~~~S~r 160 (256)
T smart00672 81 SDKNAYAYWRGNPTVASERLDLIKCNQSSPELVNARITIQDWPGKCDGEEDAPGFKKSPLEEQCKHKYKINIEGVAWSVR 160 (256)
T ss_pred cccCcCccccCCCCCCcchHHHHHHhcCCcccceeEEEEecCCCCChHHhcccCcCCCCHHHHhhcceEEecCCccchhh
Confidence 9999999999999977799999999888888899999988875 23445667799999999999999999999999
Q ss_pred hHHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCccc--HHHHHHhcccChHHHHHHHHHHHHHHHHHhchhhH
Q 043671 350 EKYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRS--IKFAVDWGNNHTGKAQEIGRAASRFIQEELKMDYV 427 (525)
Q Consensus 350 lkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sD--L~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~~~v 427 (525)
|+++|+|+||||++++.|+|||+++|+||+|||||+.|. +| |+++|+|+++||++||+||++|++|++++|+++++
T Consensus 161 l~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYvPv~~d~--sd~~l~~~i~~~~~~~~~a~~Ia~~~~~~~~~~L~~~~~ 238 (256)
T smart00672 161 LKYILACDSVVLKVKPEYYEFFSRGLQPWVHYWPIKSDL--SCRELKEAVDWGNEHDKKAQEIGKRGSEFIQQNLSMEDV 238 (256)
T ss_pred HHHHHhcCceEEEeCCchhHHHHhcccCccceEEeeCCC--chhhHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 999999999999999999999999999999999999996 66 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccC
Q 043671 428 YDYMFHLLNQYSKLFRYQ 445 (525)
Q Consensus 428 ~~Y~~~LL~eYAkL~~~k 445 (525)
+|||++||+|||+||+|+
T Consensus 239 ~~Y~~~ll~eya~l~~~~ 256 (256)
T smart00672 239 YDYMFHLLQEYAKLLKYK 256 (256)
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 999999999999999986
No 4
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=97.55 E-value=0.00027 Score=59.32 Aligned_cols=82 Identities=7% Similarity=0.025 Sum_probs=68.3
Q ss_pred CccchhhHHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhc
Q 043671 344 SAWSVSEKYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELK 423 (525)
Q Consensus 344 ~s~S~RlkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~ 423 (525)
.+.+.|+--.|+||.+||...+ .-+...+.+..|++-++ + .+|+.++++++.+||++.++||++|++++++..+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~---~~~~~~~~~~~~~~~~~-~--~~el~~~i~~ll~~~~~~~~ia~~a~~~v~~~~t 82 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS---PGLREIFEDGEHIITYN-D--PEELAEKIEYLLENPEERRRIAKNARERVLKRHT 82 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh---HHHHHHcCCCCeEEEEC-C--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhCC
Confidence 4567788889999999998865 23334478888999988 4 3899999999999999999999999999999988
Q ss_pred hhhHHHHH
Q 043671 424 MDYVYDYM 431 (525)
Q Consensus 424 ~~~v~~Y~ 431 (525)
-+.+..++
T Consensus 83 ~~~~~~~i 90 (92)
T PF13524_consen 83 WEHRAEQI 90 (92)
T ss_pred HHHHHHHH
Confidence 77766654
No 5
>PRK10307 putative glycosyl transferase; Provisional
Probab=65.97 E-value=22 Score=37.59 Aligned_cols=85 Identities=8% Similarity=0.030 Sum_probs=57.7
Q ss_pred cchhhHHHHhcCCeeeeecCc---cccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHh
Q 043671 346 WSVSEKYILACDSVTLYVTPN---YTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEEL 422 (525)
Q Consensus 346 ~S~RlkyLLac~SvVLk~~s~---y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L 422 (525)
.+..+--.|+||-.|+..... ..|-. . ..-++ +..++ .++|.++|..+.+++++.++++++|++++++.+
T Consensus 320 ~p~kl~eama~G~PVi~s~~~g~~~~~~i----~-~~G~~-~~~~d-~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~f 392 (412)
T PRK10307 320 LPSKLTNMLASGRNVVATAEPGTELGQLV----E-GIGVC-VEPES-VEALVAAIAALARQALLRPKLGTVAREYAERTL 392 (412)
T ss_pred CcHHHHHHHHcCCCEEEEeCCCchHHHHH----h-CCcEE-eCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHc
Confidence 344444558999988776432 12211 1 11221 22222 378999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHH
Q 043671 423 KMDYVYDYMFHLLNQ 437 (525)
Q Consensus 423 ~~~~v~~Y~~~LL~e 437 (525)
+.+.+..-+..++++
T Consensus 393 s~~~~~~~~~~~~~~ 407 (412)
T PRK10307 393 DKENVLRQFIADIRG 407 (412)
T ss_pred CHHHHHHHHHHHHHH
Confidence 988877766555543
No 6
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.47 E-value=21 Score=38.28 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=54.6
Q ss_pred ccchhhHHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhc
Q 043671 345 AWSVSEKYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELK 423 (525)
Q Consensus 345 s~S~RlkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~ 423 (525)
+.+.|..-+++|+...+ +.|.+-....++|+.-.+-- .| ..|+.++++++.+||+++++||+.|-+=+...-+
T Consensus 275 ~~~~RvFeiagc~~~li---T~~~~~~e~~f~pgk~~iv~-~d--~kdl~~~~~yll~h~~erkeiae~~ye~V~~~ht 347 (373)
T COG4641 275 SPTNRVFEIAGCGGFLI---TDYWKDLEKFFKPGKDIIVY-QD--SKDLKEKLKYLLNHPDERKEIAECAYERVLARHT 347 (373)
T ss_pred CchhhHHHHhhcCCccc---cccHHHHHHhcCCchheEEe-cC--HHHHHHHHHHHhcCcchHHHHHHhhHHHHHHhcc
Confidence 34778889999998433 34555555666777776633 34 3899999999999999999999999876654433
No 7
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=63.19 E-value=35 Score=36.55 Aligned_cols=87 Identities=9% Similarity=0.040 Sum_probs=60.8
Q ss_pred cchhhHHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCcccHHHHHHhccc-ChHHHHHHHHHHHHHHHHHhch
Q 043671 346 WSVSEKYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNN-HTGKAQEIGRAASRFIQEELKM 424 (525)
Q Consensus 346 ~S~RlkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~-hd~~Aq~IA~~g~~fa~~~L~~ 424 (525)
+...+---|+||-.|+..... -..+.+....+-+=+..++ .++|.++|..+.+ ++++.++++++|++++.+.++.
T Consensus 317 ~p~~llEAma~G~PVI~t~~~---g~~E~v~~~~~G~lv~~~d-~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~ 392 (406)
T PRK15427 317 IPVALMEAMAVGIPVVSTLHS---GIPELVEADKSGWLVPEND-AQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQ 392 (406)
T ss_pred ccHHHHHHHhCCCCEEEeCCC---CchhhhcCCCceEEeCCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCH
Confidence 455566778999988775422 1223344444433344332 4789999999888 9999999999999999999988
Q ss_pred hhHHHHHHHHHH
Q 043671 425 DYVYDYMFHLLN 436 (525)
Q Consensus 425 ~~v~~Y~~~LL~ 436 (525)
+.+..=+.+++.
T Consensus 393 ~~~~~~l~~~~~ 404 (406)
T PRK15427 393 QVINRELASLLQ 404 (406)
T ss_pred HHHHHHHHHHHh
Confidence 877665555554
No 8
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=63.00 E-value=29 Score=33.89 Aligned_cols=84 Identities=11% Similarity=-0.065 Sum_probs=57.6
Q ss_pred ccchhhHHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhch
Q 043671 345 AWSVSEKYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELKM 424 (525)
Q Consensus 345 s~S~RlkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~ 424 (525)
+++..+---|+||-.|+..... .+.+.+....+-+-+..+. .+++.+++..+..+++..+++++++++.+.+.++.
T Consensus 287 ~~~~~~~Ea~~~g~pvI~~~~~---~~~~~~~~~~~g~~~~~~~-~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (374)
T cd03801 287 GFGLVLLEAMAAGLPVVASDVG---GIPEVVEDGETGLLVPPGD-PEALAEAILRLLDDPELRRRLGEAARERVAERFSW 362 (374)
T ss_pred cccchHHHHHHcCCcEEEeCCC---ChhHHhcCCcceEEeCCCC-HHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhcCH
Confidence 4555666678889988876631 2222333233333333332 47899999999999999999999999989899887
Q ss_pred hhHHHHHH
Q 043671 425 DYVYDYMF 432 (525)
Q Consensus 425 ~~v~~Y~~ 432 (525)
+.+..=+.
T Consensus 363 ~~~~~~~~ 370 (374)
T cd03801 363 DRVAARTE 370 (374)
T ss_pred HHHHHHHH
Confidence 77655333
No 9
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=59.67 E-value=50 Score=33.64 Aligned_cols=89 Identities=13% Similarity=0.001 Sum_probs=60.3
Q ss_pred cCCccchhhHHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHH
Q 043671 342 EGSAWSVSEKYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEE 421 (525)
Q Consensus 342 DG~s~S~RlkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~ 421 (525)
||.+. .+---|+||-.|+..+... ..+.+..+..-+=++.++ .+++..++..+.+++++.+++++++++++.+.
T Consensus 281 E~~~~--~~~EAma~g~PvI~s~~~~---~~e~i~~~~~G~~~~~~~-~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 354 (371)
T cd04962 281 ESFGL--AALEAMACGVPVVASNAGG---IPEVVKHGETGFLVDVGD-VEAMAEYALSLLEDDELWQEFSRAARNRAAER 354 (371)
T ss_pred CCCcc--HHHHHHHcCCCEEEeCCCC---chhhhcCCCceEEcCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 44443 3455688888777755321 233444444333344332 47899999998899999999999999999899
Q ss_pred hchhhHHHHHHHHHH
Q 043671 422 LKMDYVYDYMFHLLN 436 (525)
Q Consensus 422 L~~~~v~~Y~~~LL~ 436 (525)
++.+.+..-+..+++
T Consensus 355 fs~~~~~~~~~~~y~ 369 (371)
T cd04962 355 FDSERIVPQYEALYR 369 (371)
T ss_pred CCHHHHHHHHHHHHH
Confidence 998887766655543
No 10
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=54.97 E-value=44 Score=33.98 Aligned_cols=82 Identities=10% Similarity=-0.042 Sum_probs=56.4
Q ss_pred cchhhHHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhchh
Q 043671 346 WSVSEKYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELKMD 425 (525)
Q Consensus 346 ~S~RlkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~~ 425 (525)
++..+--.|+||-.|+..+.. -..+.+.....-+=+..++ .++|.++|..+.++++..++++++|++++.+.++.+
T Consensus 283 ~~~~~~EA~a~G~PvI~s~~~---~~~e~i~~~~~g~~~~~~d-~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~ 358 (367)
T cd05844 283 LPVVLLEAQASGVPVVATRHG---GIPEAVEDGETGLLVPEGD-VAALAAALGRLLADPDLRARMGAAGRRRVEERFDLR 358 (367)
T ss_pred CchHHHHHHHcCCCEEEeCCC---CchhheecCCeeEEECCCC-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCCHH
Confidence 445566678999988865532 1223334434333343322 378999999988999999999999999999999877
Q ss_pred hHHHHH
Q 043671 426 YVYDYM 431 (525)
Q Consensus 426 ~v~~Y~ 431 (525)
.+..-+
T Consensus 359 ~~~~~l 364 (367)
T cd05844 359 RQTAKL 364 (367)
T ss_pred HHHHHH
Confidence 765543
No 11
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=54.06 E-value=59 Score=34.24 Aligned_cols=83 Identities=13% Similarity=0.051 Sum_probs=58.1
Q ss_pred ccchhhHHHHhcCCeeeeecCccccccccCC--CCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHh
Q 043671 345 AWSVSEKYILACDSVTLYVTPNYTDFFTRGL--IPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEEL 422 (525)
Q Consensus 345 s~S~RlkyLLac~SvVLk~~s~y~e~f~~~L--~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L 422 (525)
+....+---|+||-.|+...... ..+ ....+++- ..| .+++.++|..+.++++..++++++|++++.+.+
T Consensus 310 G~~~~~lEAma~G~PVV~t~~~~-----~~i~~~~~~g~lv-~~~--~~~la~ai~~ll~~~~~~~~~~~~ar~~v~~~f 381 (397)
T TIGR03087 310 GIQNKVLEAMAMAKPVVASPEAA-----EGIDALPGAELLV-AAD--PADFAAAILALLANPAEREELGQAARRRVLQHY 381 (397)
T ss_pred CcccHHHHHHHcCCCEEecCccc-----ccccccCCcceEe-CCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhC
Confidence 34445556789999887764211 112 23456653 244 378999999999999999999999999999988
Q ss_pred chhhHHHHHHHHH
Q 043671 423 KMDYVYDYMFHLL 435 (525)
Q Consensus 423 ~~~~v~~Y~~~LL 435 (525)
+.+.+..=+..+|
T Consensus 382 sw~~~~~~~~~~l 394 (397)
T TIGR03087 382 HWPRNLARLDALL 394 (397)
T ss_pred CHHHHHHHHHHHh
Confidence 8776665544443
No 12
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=53.76 E-value=63 Score=31.64 Aligned_cols=81 Identities=12% Similarity=0.031 Sum_probs=56.1
Q ss_pred ccchhhHHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhch
Q 043671 345 AWSVSEKYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELKM 424 (525)
Q Consensus 345 s~S~RlkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~ 424 (525)
+++..+---|+||-.|+..+..- ..+.+.....=+-+..++ .+++.++|..+..+++..+++++++++++.+.++.
T Consensus 275 ~~~~~~~Ea~~~G~Pvi~s~~~~---~~~~i~~~~~g~~~~~~~-~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~ 350 (359)
T cd03808 275 GLPRVLLEAMAMGRPVIATDVPG---CREAVIDGVNGFLVPPGD-AEALADAIERLIEDPELRARMGQAARKRAEEEFDE 350 (359)
T ss_pred CcchHHHHHHHcCCCEEEecCCC---chhhhhcCcceEEECCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCH
Confidence 34556667788998877754321 123333333333444432 37899999999999999999999999999888887
Q ss_pred hhHHH
Q 043671 425 DYVYD 429 (525)
Q Consensus 425 ~~v~~ 429 (525)
+.+..
T Consensus 351 ~~~~~ 355 (359)
T cd03808 351 EIVVK 355 (359)
T ss_pred HHHHH
Confidence 76543
No 13
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=53.09 E-value=47 Score=35.10 Aligned_cols=82 Identities=12% Similarity=0.040 Sum_probs=55.8
Q ss_pred hHHHHhcCCeeeeecCccccccccCCCCcce---eEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhchhh
Q 043671 350 EKYILACDSVTLYVTPNYTDFFTRGLIPMHH---FWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELKMDY 426 (525)
Q Consensus 350 lkyLLac~SvVLk~~s~y~e~f~~~L~P~~H---YVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~~~ 426 (525)
+---|+||-.|+..... -..+.+..... .++ ..| .++|.+++..+.++++. ++++++|++.+.+.++.+.
T Consensus 294 ~lEAma~G~PVI~s~~g---g~~Eiv~~~~~G~~l~~-~~d--~~~la~~I~~ll~d~~~-~~~~~~ar~~~~~~fsw~~ 366 (380)
T PRK15484 294 AVEAMAAGKPVLASTKG---GITEFVLEGITGYHLAE-PMT--SDSIISDINRTLADPEL-TQIAEQAKDFVFSKYSWEG 366 (380)
T ss_pred HHHHHHcCCCEEEeCCC---CcHhhcccCCceEEEeC-CCC--HHHHHHHHHHHHcCHHH-HHHHHHHHHHHHHhCCHHH
Confidence 34557888877765431 11122333332 222 123 37899999999998875 7899999999999999888
Q ss_pred HHHHHHHHHHHH
Q 043671 427 VYDYMFHLLNQY 438 (525)
Q Consensus 427 v~~Y~~~LL~eY 438 (525)
+..=+.++|..|
T Consensus 367 ~a~~~~~~l~~~ 378 (380)
T PRK15484 367 VTQRFEEQIHNW 378 (380)
T ss_pred HHHHHHHHHHHh
Confidence 877777777766
No 14
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=51.94 E-value=48 Score=32.94 Aligned_cols=80 Identities=10% Similarity=0.036 Sum_probs=53.5
Q ss_pred ccchhhHHHHhcCCeeeeecCcc-ccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhc
Q 043671 345 AWSVSEKYILACDSVTLYVTPNY-TDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELK 423 (525)
Q Consensus 345 s~S~RlkyLLac~SvVLk~~s~y-~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~ 423 (525)
+.+..+---|+||-.|+...... .+. +.....-.-+..+. .++|.++|.-+..++++.+++++++++++.+..+
T Consensus 311 ~~p~~~~Ea~~~G~pvi~~~~~~~~~~----~~~~~~g~~~~~~~-~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s 385 (394)
T cd03794 311 VSPSKLFEYMAAGKPVLASVDGESAEL----VEEAGAGLVVPPGD-PEALAAAILELLDDPEERAEMGENGRRYVEEKFS 385 (394)
T ss_pred cCchHHHHHHHCCCcEEEecCCCchhh----hccCCcceEeCCCC-HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhc
Confidence 33445566788888777765332 222 22222222233221 3789999999999999999999999999998888
Q ss_pred hhhHHH
Q 043671 424 MDYVYD 429 (525)
Q Consensus 424 ~~~v~~ 429 (525)
.+.+..
T Consensus 386 ~~~~~~ 391 (394)
T cd03794 386 REKLAE 391 (394)
T ss_pred HHHHHH
Confidence 776543
No 15
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=51.80 E-value=73 Score=31.34 Aligned_cols=78 Identities=13% Similarity=0.137 Sum_probs=54.1
Q ss_pred ccchhhHHHHhcCCeeeeecCc-cccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhc
Q 043671 345 AWSVSEKYILACDSVTLYVTPN-YTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELK 423 (525)
Q Consensus 345 s~S~RlkyLLac~SvVLk~~s~-y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~ 423 (525)
+++..+---|+||-.|+..... ..|+..+ .--.++.. + .+++.+++..+.+++++.+++++++.+++++.++
T Consensus 280 ~~~~~~~Ea~a~g~PvI~~~~~~~~e~~~~----~g~~~~~~-~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s 352 (365)
T cd03807 280 GFPNVLLEAMACGLPVVATDVGDNAELVGD----TGFLVPPG-D--PEALAEAIEALLADPALRQALGEAARERIEENFS 352 (365)
T ss_pred cCCcHHHHHHhcCCCEEEcCCCChHHHhhc----CCEEeCCC-C--HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 3455566678888877765533 2333333 12223222 2 3789999999999999999999999999999988
Q ss_pred hhhHHH
Q 043671 424 MDYVYD 429 (525)
Q Consensus 424 ~~~v~~ 429 (525)
.+.+..
T Consensus 353 ~~~~~~ 358 (365)
T cd03807 353 IEAMVE 358 (365)
T ss_pred HHHHHH
Confidence 776544
No 16
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=50.24 E-value=91 Score=32.12 Aligned_cols=85 Identities=8% Similarity=-0.066 Sum_probs=56.4
Q ss_pred cchhhHHHHhcCCeeeeecC-ccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhch
Q 043671 346 WSVSEKYILACDSVTLYVTP-NYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELKM 424 (525)
Q Consensus 346 ~S~RlkyLLac~SvVLk~~s-~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~ 424 (525)
++..+---|+||-.|+..+. ...|. +....+=+-+..++ .+++.+++..+.++++..+.++++|++.+.+.++.
T Consensus 285 ~~~~~lEAma~G~Pvv~s~~~g~~e~----i~~~~~g~~~~~~d-~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~ 359 (374)
T TIGR03088 285 ISNTILEAMASGLPVIATAVGGNPEL----VQHGVTGALVPPGD-AVALARALQPYVSDPAARRAHGAAGRARAEQQFSI 359 (374)
T ss_pred CchHHHHHHHcCCCEEEcCCCCcHHH----hcCCCceEEeCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCH
Confidence 34445567889988777543 12222 22222222233322 47899999999999999999999999999999988
Q ss_pred hhHHHHHHHHH
Q 043671 425 DYVYDYMFHLL 435 (525)
Q Consensus 425 ~~v~~Y~~~LL 435 (525)
+.+..-+..+.
T Consensus 360 ~~~~~~~~~~y 370 (374)
T TIGR03088 360 NAMVAAYAGLY 370 (374)
T ss_pred HHHHHHHHHHH
Confidence 77665444443
No 17
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=49.43 E-value=88 Score=31.18 Aligned_cols=79 Identities=10% Similarity=0.005 Sum_probs=54.1
Q ss_pred ccchhhHHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhch
Q 043671 345 AWSVSEKYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELKM 424 (525)
Q Consensus 345 s~S~RlkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~ 424 (525)
+++..+-.-|+||-.|+..+....+ .+.....-+-+..++ .+++.+++..+.++++..+++++++.+++++ ++.
T Consensus 281 ~~~~~~~Ea~a~G~PvI~~~~~~~~----~i~~~~~g~~~~~~d-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~s~ 354 (366)
T cd03822 281 TQSGVLAYAIGFGKPVISTPVGHAE----EVLDGGTGLLVPPGD-PAALAEAIRRLLADPELAQALRARAREYARA-MSW 354 (366)
T ss_pred ccchHHHHHHHcCCCEEecCCCChh----eeeeCCCcEEEcCCC-HHHHHHHHHHHHcChHHHHHHHHHHHHHHhh-CCH
Confidence 5666677778999988876543222 222222222233222 3789999999999999999999999999987 776
Q ss_pred hhHHH
Q 043671 425 DYVYD 429 (525)
Q Consensus 425 ~~v~~ 429 (525)
+.+..
T Consensus 355 ~~~~~ 359 (366)
T cd03822 355 ERVAE 359 (366)
T ss_pred HHHHH
Confidence 66543
No 18
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=49.43 E-value=60 Score=33.47 Aligned_cols=75 Identities=11% Similarity=0.074 Sum_probs=51.2
Q ss_pred HHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCc------ccHHHHHHhcccChHHHHHHHHHHHHHHHHHhch
Q 043671 351 KYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKC------RSIKFAVDWGNNHTGKAQEIGRAASRFIQEELKM 424 (525)
Q Consensus 351 kyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~------sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~ 424 (525)
---|+||-.|+..... -..+.+.....-+-+..+. - ++|.++|..+.+++++.+++++++++.+.+.++.
T Consensus 298 lEA~a~G~PvI~s~~~---~~~e~i~~~~~G~~~~~~~-~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~ 373 (388)
T TIGR02149 298 LEAMACGTPVVASATG---GIPEVVVDGETGFLVPPDN-SDADGFQAELAKAINILLADPELAKKMGIAGRKRAEEEFSW 373 (388)
T ss_pred HHHHHcCCCEEEeCCC---CHHHHhhCCCceEEcCCCC-CcccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCH
Confidence 4567888877775532 1222333333333343332 2 5788999988899999999999999999988887
Q ss_pred hhHHH
Q 043671 425 DYVYD 429 (525)
Q Consensus 425 ~~v~~ 429 (525)
+.+..
T Consensus 374 ~~~~~ 378 (388)
T TIGR02149 374 GSIAK 378 (388)
T ss_pred HHHHH
Confidence 77655
No 19
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=49.15 E-value=41 Score=36.29 Aligned_cols=85 Identities=12% Similarity=0.035 Sum_probs=57.4
Q ss_pred cCCccchhhHHHHhcCCeeeeecC-ccccccccCCCCcce--eEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHH
Q 043671 342 EGSAWSVSEKYILACDSVTLYVTP-NYTDFFTRGLIPMHH--FWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFI 418 (525)
Q Consensus 342 DG~s~S~RlkyLLac~SvVLk~~s-~y~e~f~~~L~P~~H--YVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa 418 (525)
||.+. -.---|+|+-.|+.... ...|.. ..... .+|.. | -++|.++|..+.++++.+++++++|++++
T Consensus 351 E~fg~--~~lEAma~G~PvV~s~~gg~~eiv----~~~~~G~lv~~~-d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 421 (439)
T TIGR02472 351 EPFGL--TLLEAAACGLPIVATDDGGPRDII----ANCRNGLLVDVL-D--LEAIASALEDALSDSSQWQLWSRNGIEGV 421 (439)
T ss_pred CCccc--HHHHHHHhCCCEEEeCCCCcHHHh----cCCCcEEEeCCC-C--HHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 55433 34556888887776653 233332 22222 23332 2 37899999999999999999999999999
Q ss_pred HHHhchhhHHHHHHHHH
Q 043671 419 QEELKMDYVYDYMFHLL 435 (525)
Q Consensus 419 ~~~L~~~~v~~Y~~~LL 435 (525)
.+.++.+.+..=+..+|
T Consensus 422 ~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 422 RRHYSWDAHVEKYLRIL 438 (439)
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 99998877666555544
No 20
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=46.72 E-value=99 Score=31.06 Aligned_cols=79 Identities=14% Similarity=0.163 Sum_probs=51.5
Q ss_pred cchhhHHHHhcCCeeeeecCc-cccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhch
Q 043671 346 WSVSEKYILACDSVTLYVTPN-YTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELKM 424 (525)
Q Consensus 346 ~S~RlkyLLac~SvVLk~~s~-y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~ 424 (525)
++..+---|+||-.|+..+.. ..|.. .....=+-+..+. .+++.+++..+.+++++.+++++++++++.+.++.
T Consensus 277 ~g~~~~Eam~~g~PvI~~~~~~~~e~~----~~~~~g~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~ 351 (365)
T cd03825 277 FPNTAIEALACGTPVVAFDVGGIPDIV----DHGVTGYLAKPGD-PEDLAEGIEWLLADPDEREELGEAARELAENEFDS 351 (365)
T ss_pred ccHHHHHHHhcCCCEEEecCCCChhhe----eCCCceEEeCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCH
Confidence 344455667888877765432 22322 2222222233322 37899999999899999999999999999888876
Q ss_pred hhHHH
Q 043671 425 DYVYD 429 (525)
Q Consensus 425 ~~v~~ 429 (525)
+.+..
T Consensus 352 ~~~~~ 356 (365)
T cd03825 352 RVQAK 356 (365)
T ss_pred HHHHH
Confidence 65543
No 21
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=45.64 E-value=53 Score=32.97 Aligned_cols=77 Identities=12% Similarity=-0.010 Sum_probs=50.4
Q ss_pred chhhHHHHhcCCeeeeecCc-cccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhchh
Q 043671 347 SVSEKYILACDSVTLYVTPN-YTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELKMD 425 (525)
Q Consensus 347 S~RlkyLLac~SvVLk~~s~-y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~~ 425 (525)
+..+---|+||-.||..+.. ..+.... ....=.-+..++ .+++.++|..+.+++++.++|+++|++++.++.+.+
T Consensus 279 g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~~~g~~~~~~d-~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 354 (357)
T cd03795 279 GIVLLEAMAFGKPVISTEIGTGGSYVNL---HGVTGLVVPPGD-PAALAEAIRRLLEDPELRERLGEAARERAEEEFTAD 354 (357)
T ss_pred chHHHHHHHcCCCEEecCCCCchhHHhh---CCCceEEeCCCC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHhcchH
Confidence 33455567888888776532 1222111 122212222222 478999999999999999999999999999988876
Q ss_pred hH
Q 043671 426 YV 427 (525)
Q Consensus 426 ~v 427 (525)
.+
T Consensus 355 ~~ 356 (357)
T cd03795 355 RM 356 (357)
T ss_pred hh
Confidence 54
No 22
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=44.91 E-value=1e+02 Score=30.57 Aligned_cols=72 Identities=7% Similarity=-0.120 Sum_probs=52.1
Q ss_pred cchhhHHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHh
Q 043671 346 WSVSEKYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEEL 422 (525)
Q Consensus 346 ~S~RlkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L 422 (525)
++..+---|+||-.|+..... .+.+.+....+-.-+..+. .++.+++..+.++++..+++++++++++.++.
T Consensus 291 ~~~~~~Ea~~~g~PvI~~~~~---~~~~~i~~~~~g~~~~~~~--~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 362 (374)
T cd03817 291 QGLVLLEAMAAGLPVVAVDAP---GLPDLVADGENGFLFPPGD--EALAEALLRLLQDPELRRRLSKNAEESAEKFS 362 (374)
T ss_pred cChHHHHHHHcCCcEEEeCCC---ChhhheecCceeEEeCCCC--HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 444555678888888876532 2334455555555555543 28999999999999999999999999997765
No 23
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=44.53 E-value=1.1e+02 Score=32.07 Aligned_cols=75 Identities=13% Similarity=0.029 Sum_probs=51.8
Q ss_pred hhHHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhchhhH
Q 043671 349 SEKYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELKMDYV 427 (525)
Q Consensus 349 RlkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~~~v 427 (525)
.+---|+||-.|+..+.. -..+.+.....=+-+..++ -++|.++|..+.+++++.++++++|++.+.++++.+.+
T Consensus 316 ~llEAmA~G~PVIas~~~---g~~e~i~~~~~G~lv~~~d-~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~~~ 390 (396)
T cd03818 316 SLLEAMACGCLVVGSDTA---PVREVITDGENGLLVDFFD-PDALAAAVIELLDDPARRARLRRAARRTALRYDLLSVC 390 (396)
T ss_pred HHHHHHHCCCCEEEcCCC---CchhhcccCCceEEcCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHHHH
Confidence 345568999988876532 1223333333333333222 37899999999999999999999999999888876543
No 24
>PHA03048 IMV membrane protein; Provisional
Probab=42.95 E-value=27 Score=30.06 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhh
Q 043671 31 AKSYALFAFIFLLLVGALISTRL 53 (525)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~ 53 (525)
+-|...|++.+++++|+++++.|
T Consensus 45 alsii~FIlgivl~lG~~ifsmy 67 (93)
T PHA03048 45 ALSGIAFVLGIVMTIGMLIYSMW 67 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777899999999999999999
No 25
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=42.43 E-value=1e+02 Score=30.83 Aligned_cols=127 Identities=17% Similarity=0.213 Sum_probs=74.6
Q ss_pred CCCceecCCCCCcCCCcccccchHHHHHHHhhccCCCCCCCcCCceEeeeCCCCc------chHHHHHHhhhhcCCCcce
Q 043671 236 QTFDIVFPDWSFWGWPEVNIKSWGKILKDLEEGNRRMNWTDREPYAYWKGNPVVA------SSRQDLMKCNVSEGQEWNA 309 (525)
Q Consensus 236 ~~~DIl~Pd~~fwgwpe~~i~~w~~~~~~l~~~~~~~pW~~K~pkafWRG~~t~~------~~R~~Lv~~~~s~~~~~~a 309 (525)
...||++|.+.... ....+. .....+..+|.-.++++|..... ..|..|+..-...+ ++.
T Consensus 151 ~~~Di~~P~~~~~~----~~~~~~--------~~~~~~~~~R~~l~~f~g~~~~~~~~~~~~~r~~l~~~~~~~~-~~~- 216 (302)
T PF03016_consen 151 PGFDIVIPPFVPPS----SLPDWR--------PWPQRPPARRPYLLFFAGTIRPSSNDYSGGVRQRLLDECKSDP-DFR- 216 (302)
T ss_pred CCCCeecccccccc----ccCCcc--------ccccCCccCCceEEEEeeeccccccccchhhhhHHHHhcccCC-cce-
Confidence 45789999875421 001110 00245677889999999997542 57888877422211 111
Q ss_pred eeeecchhhhhhcCCCCCChhhhccccEEEeecCCc-cchhhHHHHhcCCeeeeecCccccccccCCCCcceeE
Q 043671 310 RLYVQDWKREKQKGYKQSDLASQCKHRFKIYIEGSA-WSVSEKYILACDSVTLYVTPNYTDFFTRGLIPMHHFW 382 (525)
Q Consensus 310 ~v~~~~w~~e~~~G~~~~~l~d~c~yKYli~vDG~s-~S~RlkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYV 382 (525)
+..... ...+ ...-++...+-||-+...|.+ +|.||-=-|++|++-+.....+..=|.+.| +|.-|.
T Consensus 217 -~~~~~~---~~~~-~~~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~l-dw~~fs 284 (302)
T PF03016_consen 217 -CSDGSE---TCPS-PSEYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVL-DWSRFS 284 (302)
T ss_pred -eeeccc---cccc-chHHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCcccCCccccc-CHHHEE
Confidence 111000 0000 011245568889999999996 899999899999976666555554455444 665554
No 26
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=42.33 E-value=92 Score=31.34 Aligned_cols=80 Identities=11% Similarity=0.021 Sum_probs=53.9
Q ss_pred cchhhHHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhchh
Q 043671 346 WSVSEKYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELKMD 425 (525)
Q Consensus 346 ~S~RlkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~~ 425 (525)
++..+---|+||-.|+...... ..+.+.....+++. + +++.++|.++.++++..+++++++++.+.+.++.+
T Consensus 281 ~~~~~~EAma~G~PvI~s~~~~---~~e~~~~~g~~~~~--~---~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~ 352 (363)
T cd04955 281 TNPSLLEAMAYGCPVLASDNPF---NREVLGDKAIYFKV--G---DDLASLLEELEADPEEVSAMAKAARERIREKYTWE 352 (363)
T ss_pred CChHHHHHHHcCCCEEEecCCc---cceeecCCeeEecC--c---hHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHH
Confidence 4444666788999888765321 12222223334322 2 23999999999999999999999999998888877
Q ss_pred hHHHHHHH
Q 043671 426 YVYDYMFH 433 (525)
Q Consensus 426 ~v~~Y~~~ 433 (525)
.+..=+..
T Consensus 353 ~~~~~~~~ 360 (363)
T cd04955 353 KIADQYEE 360 (363)
T ss_pred HHHHHHHH
Confidence 66554333
No 27
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=42.19 E-value=1e+02 Score=32.03 Aligned_cols=80 Identities=6% Similarity=-0.034 Sum_probs=53.4
Q ss_pred hhHHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhchhhHH
Q 043671 349 SEKYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELKMDYVY 428 (525)
Q Consensus 349 RlkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~~~v~ 428 (525)
..---|+||-.|+..+..- ..+.+..+..-+-+... +++..++..+.+++++.++++++|.+.+.+.++.+.+.
T Consensus 289 ~~lEA~a~G~Pvv~s~~~~---~~~~i~~~~~g~~~~~~---~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~ 362 (372)
T cd03792 289 TVTEALWKGKPVIAGPVGG---IPLQIEDGETGFLVDTV---EEAAVRILYLLRDPELRRKMGANAREHVRENFLITRHL 362 (372)
T ss_pred HHHHHHHcCCCEEEcCCCC---chhhcccCCceEEeCCc---HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 4445678888776654221 12234444544444432 57888898888899999999999999998888877665
Q ss_pred HHHHHH
Q 043671 429 DYMFHL 434 (525)
Q Consensus 429 ~Y~~~L 434 (525)
.=|..+
T Consensus 363 ~~~~~~ 368 (372)
T cd03792 363 KDYLYL 368 (372)
T ss_pred HHHHHH
Confidence 533333
No 28
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=41.52 E-value=88 Score=31.29 Aligned_cols=78 Identities=12% Similarity=-0.021 Sum_probs=53.1
Q ss_pred cchhhHHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhchh
Q 043671 346 WSVSEKYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELKMD 425 (525)
Q Consensus 346 ~S~RlkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~~ 425 (525)
++..+---|+||-.|+..... ...+.+.....=+-+..++ .+++.++|..+.+++++.++++++|++++.+.++.+
T Consensus 274 ~~~~~~Ea~a~G~Pvi~~~~~---~~~~~i~~~~~g~~~~~~~-~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~s~~ 349 (355)
T cd03799 274 LPVVLMEAMAMGLPVISTDVS---GIPELVEDGETGLLVPPGD-PEALADAIERLLDDPELRREMGEAGRARVEEEFDIR 349 (355)
T ss_pred ccHHHHHHHHcCCCEEecCCC---CcchhhhCCCceEEeCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHH
Confidence 345555667888877765432 2223344442222234322 478999999999999999999999999999888766
Q ss_pred hH
Q 043671 426 YV 427 (525)
Q Consensus 426 ~v 427 (525)
.+
T Consensus 350 ~~ 351 (355)
T cd03799 350 KQ 351 (355)
T ss_pred HH
Confidence 54
No 29
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=40.44 E-value=32 Score=29.67 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=21.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcc
Q 043671 31 AKSYALFAFIFLLLVGALISTRLLD 55 (525)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (525)
+-|...|++.+++++|.+|++.|--
T Consensus 46 alSii~FI~giil~lG~~i~s~ygr 70 (92)
T PF05767_consen 46 ALSIICFILGIILTLGIVIFSMYGR 70 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4577889999999999999999943
No 30
>PHA02898 virion envelope protein; Provisional
Probab=39.82 E-value=32 Score=29.54 Aligned_cols=24 Identities=17% Similarity=0.283 Sum_probs=21.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhc
Q 043671 31 AKSYALFAFIFLLLVGALISTRLL 54 (525)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~ 54 (525)
+-|...|++.+++++|+++++.|-
T Consensus 46 alSii~FIlgivl~lG~~ifs~y~ 69 (92)
T PHA02898 46 SISIISFILAIILILGIIFFKGYN 69 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788999999999999999994
No 31
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=37.97 E-value=36 Score=29.22 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhh
Q 043671 31 AKSYALFAFIFLLLVGALISTRL 53 (525)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~ 53 (525)
+-|...|++.+++++|+++++.|
T Consensus 47 alSii~FIlG~vl~lGilifs~y 69 (91)
T PHA02680 47 ALSVTCFIVGAVLLLGLFVFSMY 69 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778899999999999999999
No 32
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=37.22 E-value=53 Score=29.73 Aligned_cols=69 Identities=13% Similarity=0.040 Sum_probs=45.8
Q ss_pred ccchhhHHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHH
Q 043671 345 AWSVSEKYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRF 417 (525)
Q Consensus 345 s~S~RlkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~f 417 (525)
+++..+---|+|+.+||..... .+.+.+.+..+-+-++... -.++.++|.-+.++++..+.|+++|++|
T Consensus 104 ~~~~~~~Ea~~~g~pvI~~~~~---~~~e~~~~~~~g~~~~~~~-~~~l~~~i~~~l~~~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 104 GFGLSLLEAMACGCPVIASDIG---GNNEIINDGVNGFLFDPND-IEELADAIEKLLNDPELRQKLGKNARER 172 (172)
T ss_dssp SS-HHHHHHHHTT-EEEEESST---HHHHHSGTTTSEEEESTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccceeecccc---CCceeeccccceEEeCCCC-HHHHHHHHHHHHCCHHHHHHHHHHhcCC
Confidence 4445566688999988876532 2333344444333333222 3789999999999999999999999975
No 33
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=34.03 E-value=84 Score=32.45 Aligned_cols=80 Identities=9% Similarity=-0.038 Sum_probs=54.9
Q ss_pred cCCccchhhHHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHH
Q 043671 342 EGSAWSVSEKYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEE 421 (525)
Q Consensus 342 DG~s~S~RlkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~ 421 (525)
||.+.+ .---|+||-.|+..+... ..+.+..+..-+=+..|. +++.+++..+.++++..++++++|.+++++.
T Consensus 310 E~~g~~--~lEAma~G~PvI~s~~~~---~~e~i~~~~~g~~~~~~~--~~~a~~i~~l~~~~~~~~~~~~~a~~~~~~~ 382 (392)
T cd03805 310 EHFGIV--PLEAMYAGKPVIACNSGG---PLETVVDGETGFLCEPTP--EEFAEAMLKLANDPDLADRMGAAGRKRVKEK 382 (392)
T ss_pred CCCCch--HHHHHHcCCCEEEECCCC---cHHHhccCCceEEeCCCH--HHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 554433 345678898887765422 223344444333344443 7899999999999999999999999999998
Q ss_pred hchhhHH
Q 043671 422 LKMDYVY 428 (525)
Q Consensus 422 L~~~~v~ 428 (525)
++.+.+.
T Consensus 383 ~s~~~~~ 389 (392)
T cd03805 383 FSTEAFA 389 (392)
T ss_pred cCHHHHh
Confidence 8877654
No 34
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=29.83 E-value=65 Score=34.33 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=43.3
Q ss_pred hHHHHhcCCeeeeecC--ccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHH
Q 043671 350 EKYILACDSVTLYVTP--NYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEE 421 (525)
Q Consensus 350 lkyLLac~SvVLk~~s--~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~ 421 (525)
.---|+||..|+.-.. .+.|-. +.+...---+++. | .++|.+++..+.++++.+++++++|++++.+.
T Consensus 337 ~lEAma~G~PVI~g~~~~~~~e~~-~~~~~~g~~~~~~-d--~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~ 406 (425)
T PRK05749 337 PLEPAAFGVPVISGPHTFNFKEIF-ERLLQAGAAIQVE-D--AEDLAKAVTYLLTDPDARQAYGEAGVAFLKQN 406 (425)
T ss_pred HHHHHHhCCCEEECCCccCHHHHH-HHHHHCCCeEEEC-C--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Confidence 3456788887775321 122211 1111111223433 2 37899999999999999999999999999776
No 35
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=29.49 E-value=2.3e+02 Score=27.95 Aligned_cols=76 Identities=8% Similarity=0.152 Sum_probs=51.8
Q ss_pred cchhhHHHHhcCCeeeeecCc-cccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhch
Q 043671 346 WSVSEKYILACDSVTLYVTPN-YTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELKM 424 (525)
Q Consensus 346 ~S~RlkyLLac~SvVLk~~s~-y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~ 424 (525)
++..+---|+||-.|+..+.. ..|...+ ...++ +..+. +++.+++..+.+++++.+.+++++.+++.+.++.
T Consensus 294 ~~~~~~Eama~G~PvI~~~~~~~~~~~~~----~~~~~-~~~~~--~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~ 366 (375)
T cd03821 294 FGIVVAEALACGTPVVTTDKVPWQELIEY----GCGWV-VDDDV--DALAAALRRALELPQRLKAMGENGRALVEERFSW 366 (375)
T ss_pred CCcHHHHHHhcCCCEEEcCCCCHHHHhhc----CceEE-eCCCh--HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCH
Confidence 344455568888877765432 2333222 22333 22232 7899999999999999999999999999888887
Q ss_pred hhHH
Q 043671 425 DYVY 428 (525)
Q Consensus 425 ~~v~ 428 (525)
+.+.
T Consensus 367 ~~~~ 370 (375)
T cd03821 367 TAIA 370 (375)
T ss_pred HHHH
Confidence 6654
No 36
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=27.92 E-value=72 Score=24.24 Aligned_cols=19 Identities=11% Similarity=0.207 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 043671 35 ALFAFIFLLLVGALISTRL 53 (525)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~ 53 (525)
..+++++++++|+++++.|
T Consensus 14 ~~l~~~~~~Figiv~wa~~ 32 (48)
T cd01324 14 WGLLYLALFFLGVVVWAFR 32 (48)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3556667888999999888
No 37
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=26.68 E-value=2.2e+02 Score=27.85 Aligned_cols=85 Identities=14% Similarity=0.068 Sum_probs=54.7
Q ss_pred ccchhhHHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhch
Q 043671 345 AWSVSEKYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELKM 424 (525)
Q Consensus 345 s~S~RlkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~ 424 (525)
+++..+---|+||..|+..+... ..+.+.....=+-++.++ ..++.+++..+.++++. +++.++.+.+.+.++.
T Consensus 290 ~~~~~~~Ea~~~G~pvI~~~~~~---~~~~~~~~~~g~~~~~~~-~~~l~~~i~~~~~~~~~--~~~~~~~~~~~~~~s~ 363 (377)
T cd03798 290 GFGLVLLEAMACGLPVVATDVGG---IPEIITDGENGLLVPPGD-PEALAEAILRLLADPWL--RLGRAARRRVAERFSW 363 (377)
T ss_pred cCChHHHHHHhcCCCEEEecCCC---hHHHhcCCcceeEECCCC-HHHHHHHHHHHhcCcHH--HHhHHHHHHHHHHhhH
Confidence 45556667788899888655321 222233334312233322 37888999999888877 7888899999888887
Q ss_pred hhHHHHHHHHH
Q 043671 425 DYVYDYMFHLL 435 (525)
Q Consensus 425 ~~v~~Y~~~LL 435 (525)
+.+..-+..++
T Consensus 364 ~~~~~~~~~~~ 374 (377)
T cd03798 364 ENVAERLLELY 374 (377)
T ss_pred HHHHHHHHHHH
Confidence 76655444444
No 38
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=26.42 E-value=3.2e+02 Score=28.44 Aligned_cols=80 Identities=10% Similarity=-0.037 Sum_probs=52.7
Q ss_pred chhhHHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhchhh
Q 043671 347 SVSEKYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELKMDY 426 (525)
Q Consensus 347 S~RlkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~~~ 426 (525)
+..+---|+||-.|+..+... ..+.+.....-+-+..++ .+++.++|..+.++++..++++++|.+.+ +.++.+.
T Consensus 316 g~~~lEAma~G~Pvi~~~~~~---~~e~i~~~~~g~~~~~~d-~~~la~~i~~~l~~~~~~~~~~~~~~~~~-~~fsw~~ 390 (405)
T TIGR03449 316 GLVAMEAQACGTPVVAARVGG---LPVAVADGETGLLVDGHD-PADWADALARLLDDPRTRIRMGAAAVEHA-AGFSWAA 390 (405)
T ss_pred ChHHHHHHHcCCCEEEecCCC---cHhhhccCCceEECCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HhCCHHH
Confidence 344556678888777655321 222334444445555432 47899999998899999999999999987 4567666
Q ss_pred HHHHH
Q 043671 427 VYDYM 431 (525)
Q Consensus 427 v~~Y~ 431 (525)
+..=+
T Consensus 391 ~~~~~ 395 (405)
T TIGR03449 391 TADGL 395 (405)
T ss_pred HHHHH
Confidence 55433
No 39
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=23.40 E-value=1.9e+02 Score=29.63 Aligned_cols=76 Identities=11% Similarity=-0.026 Sum_probs=49.7
Q ss_pred hHHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhchhhHHH
Q 043671 350 EKYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELKMDYVYD 429 (525)
Q Consensus 350 lkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~~~v~~ 429 (525)
+-=-|+||-.||..+.. ...+.+.....=+-++.++ .+++.++|..+.+++++.+++++++++++.+.++.+.+..
T Consensus 319 l~Ea~a~G~Pvi~s~~~---~~~e~i~~~~~g~~~~~~~-~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~ 394 (398)
T cd03800 319 ALEAMACGLPVVATAVG---GPRDIVVDGVTGLLVDPRD-PEALAAALRRLLTDPALRRRLSRAGLRRARARYTWERVAA 394 (398)
T ss_pred HHHHHhcCCCEEECCCC---CHHHHccCCCCeEEeCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 44557788777655421 1222233332222233222 3789999999989999999999999999988888776544
No 40
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=23.31 E-value=2e+02 Score=28.26 Aligned_cols=71 Identities=6% Similarity=-0.062 Sum_probs=45.7
Q ss_pred ccchhhHHHHhcCCeeeeecCc-cccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHH
Q 043671 345 AWSVSEKYILACDSVTLYVTPN-YTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQE 420 (525)
Q Consensus 345 s~S~RlkyLLac~SvVLk~~s~-y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~ 420 (525)
+++..+---|+||-.|+..+.. ..|+ +.....=+-+..++ ..+|.+++..+.++++..+.+++++++....
T Consensus 275 ~~~~~~~Ea~a~G~Pvi~~~~~~~~e~----i~~~~~g~~~~~~d-~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~ 346 (359)
T cd03823 275 NFPLVIREALAAGVPVIASDIGGMAEL----VRDGVNGLLFPPGD-AEDLAAALERLIDDPDLLERLRAGIEPPRSI 346 (359)
T ss_pred CCChHHHHHHHCCCCEEECCCCCHHHH----hcCCCcEEEECCCC-HHHHHHHHHHHHhChHHHHHHHHhHHHhhhH
Confidence 4455555678899877766533 2233 22222112223222 3789999999999999999999999887654
No 41
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=23.21 E-value=78 Score=22.41 Aligned_cols=19 Identities=11% Similarity=0.125 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhhcccc
Q 043671 39 FIFLLLVGALISTRLLDST 57 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~ 57 (525)
++.+.+++++|..-|+++.
T Consensus 9 l~vv~iLt~~ILvFWfgvf 27 (34)
T PF08113_consen 9 LGVVMILTAFILVFWFGVF 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHHH
Confidence 4556667777777888764
No 42
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=22.54 E-value=2.9e+02 Score=29.47 Aligned_cols=79 Identities=8% Similarity=-0.074 Sum_probs=53.4
Q ss_pred cchhhHHHHhcCCeeeeecCccccccccCCCCcce-e-EecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhc
Q 043671 346 WSVSEKYILACDSVTLYVTPNYTDFFTRGLIPMHH-F-WPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELK 423 (525)
Q Consensus 346 ~S~RlkyLLac~SvVLk~~s~y~e~f~~~L~P~~H-Y-VPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~ 423 (525)
.+..+---|+||-.|+..+..- ..+.+....+ + ++-..+ -+++.++|..+.+++++.++|+++|++++.+.++
T Consensus 323 ~p~~llEAma~G~PVIas~vgg---~~e~i~~~~~G~l~~~~~~--~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~ 397 (407)
T cd04946 323 LPVSIMEAMSFGIPVIATNVGG---TPEIVDNGGNGLLLSKDPT--PNELVSSLSKFIDNEEEYQTMREKAREKWEENFN 397 (407)
T ss_pred ccHHHHHHHHcCCCEEeCCCCC---cHHHhcCCCcEEEeCCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcC
Confidence 4455666788998887654211 1223333321 2 222223 3689999999999999999999999999999998
Q ss_pred hhhHHH
Q 043671 424 MDYVYD 429 (525)
Q Consensus 424 ~~~v~~ 429 (525)
.+-.+.
T Consensus 398 ~~~~~~ 403 (407)
T cd04946 398 ASKNYR 403 (407)
T ss_pred HHHhHH
Confidence 776543
No 43
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=22.39 E-value=3.3e+02 Score=26.90 Aligned_cols=78 Identities=6% Similarity=-0.134 Sum_probs=51.0
Q ss_pred cchhhHHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhchh
Q 043671 346 WSVSEKYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELKMD 425 (525)
Q Consensus 346 ~S~RlkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~~ 425 (525)
++..+---|+||-.||..... ...+.+.....-+=+..+. -+++.+++..+..+++..+++++++.+++ +..+.+
T Consensus 279 ~~~~~lEa~a~g~PvI~~~~~---~~~~~i~~~~~g~~~~~~~-~~~l~~~i~~l~~~~~~~~~~~~~~~~~~-~~~~~~ 353 (364)
T cd03814 279 FGLVVLEAMASGLPVVAPDAG---GPADIVTDGENGLLVEPGD-AEAFAAALAALLADPELRRRMAARARAEA-ERRSWE 353 (364)
T ss_pred CCcHHHHHHHcCCCEEEcCCC---CchhhhcCCcceEEcCCCC-HHHHHHHHHHHHcCHHHHHHHHHHHHHHH-hhcCHH
Confidence 445566678999988876532 2223343323333233322 25688999999999999999999999988 556655
Q ss_pred hHH
Q 043671 426 YVY 428 (525)
Q Consensus 426 ~v~ 428 (525)
.+.
T Consensus 354 ~~~ 356 (364)
T cd03814 354 AFL 356 (364)
T ss_pred HHH
Confidence 543
No 44
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=21.99 E-value=2.6e+02 Score=27.78 Aligned_cols=74 Identities=5% Similarity=-0.010 Sum_probs=48.6
Q ss_pred chhhHHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhchhh
Q 043671 347 SVSEKYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELKMDY 426 (525)
Q Consensus 347 S~RlkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~~~ 426 (525)
+..+---|++|-.|+..... .+.+.+.....+++.. + .+++.+++..+.++++..+++++++.+++ +.++.+.
T Consensus 286 ~~~~~Ea~a~G~pvI~~~~~---~~~e~~~~~~~~~~~~-~--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~-~~~sw~~ 358 (365)
T cd03809 286 GLPVLEAMACGTPVIASNIS---SLPEVAGDAALYFDPL-D--PEALAAAIERLLEDPALREELRERGLARA-KRFSWEK 358 (365)
T ss_pred CCCHHHHhcCCCcEEecCCC---CccceecCceeeeCCC-C--HHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HhCCHHH
Confidence 44455677888877775532 2222233344444433 2 37899999999999999999999999776 4455444
Q ss_pred H
Q 043671 427 V 427 (525)
Q Consensus 427 v 427 (525)
+
T Consensus 359 ~ 359 (365)
T cd03809 359 T 359 (365)
T ss_pred H
Confidence 3
No 45
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.10 E-value=1.8e+02 Score=31.79 Aligned_cols=80 Identities=8% Similarity=-0.033 Sum_probs=50.7
Q ss_pred chhhHHHHhcCCeeeeecC-ccccccccCCC--Cc-cee-EecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHH
Q 043671 347 SVSEKYILACDSVTLYVTP-NYTDFFTRGLI--PM-HHF-WPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEE 421 (525)
Q Consensus 347 S~RlkyLLac~SvVLk~~s-~y~e~f~~~L~--P~-~HY-VPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~ 421 (525)
+..+---|+||-.|+..+. ...|...+.-. -+ .-+ ++. .| .++|.++|..+.++++..++++++|++.+.++
T Consensus 384 p~~vlEAma~G~PVVatd~g~~~elv~~~~~~~~g~~G~lv~~-~d--~~~la~ai~~ll~~~~~~~~~~~~a~~~v~~~ 460 (475)
T cd03813 384 PLVILEAMAAGIPVVATDVGSCRELIEGADDEALGPAGEVVPP-AD--PEALARAILRLLKDPELRRAMGEAGRKRVERY 460 (475)
T ss_pred ChHHHHHHHcCCCEEECCCCChHHHhcCCcccccCCceEEECC-CC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 3344456788887776442 22333322100 01 112 222 22 37899999999999999999999999999998
Q ss_pred hchhhHHH
Q 043671 422 LKMDYVYD 429 (525)
Q Consensus 422 L~~~~v~~ 429 (525)
.+.+.+..
T Consensus 461 ~s~~~~~~ 468 (475)
T cd03813 461 YTLERMID 468 (475)
T ss_pred CCHHHHHH
Confidence 88665443
Done!