Query 043671
Match_columns 525
No_of_seqs 268 out of 832
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 12:13:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043671.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043671hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jjm_A Glycosyl transferase, g 72.7 18 0.00061 35.9 10.3 89 345-437 296-384 (394)
2 3okp_A GDP-mannose-dependent a 70.8 15 0.00051 36.0 9.1 92 346-445 292-383 (394)
3 3c48_A Predicted glycosyltrans 64.3 33 0.0011 34.3 10.4 87 346-437 338-424 (438)
4 3oy2_A Glycosyltransferase B73 63.5 13 0.00046 37.0 7.2 95 346-451 286-400 (413)
5 3qhp_A Type 1 capsular polysac 59.4 26 0.00089 30.0 7.5 72 347-426 88-162 (166)
6 2gek_A Phosphatidylinositol ma 57.2 18 0.0006 35.7 6.7 95 343-446 293-388 (406)
7 2x6q_A Trehalose-synthase TRET 52.5 32 0.0011 34.3 7.8 83 346-435 328-411 (416)
8 2r60_A Glycosyl transferase, g 43.2 73 0.0025 32.7 9.0 87 346-437 371-458 (499)
9 2bfw_A GLGA glycogen synthase; 42.7 44 0.0015 29.4 6.3 68 347-420 129-198 (200)
10 2iw1_A Lipopolysaccharide core 42.7 25 0.00087 34.1 5.1 87 345-438 282-371 (374)
11 3s28_A Sucrose synthase 1; gly 30.5 73 0.0025 36.2 6.9 89 346-439 677-770 (816)
12 3j1r_A Archaeal adhesion filam 27.7 71 0.0024 20.3 3.4 21 34-54 5-25 (26)
13 3s8f_C Cytochrome C oxidase po 26.3 36 0.0012 23.2 2.0 19 39-57 9-27 (34)
14 3fro_A GLGA glycogen synthase; 22.1 1.4E+02 0.0047 29.3 6.5 88 346-443 343-432 (439)
15 1aq5_A Matrilin-1, CMP, cartil 20.6 63 0.0021 23.6 2.5 37 482-518 5-46 (47)
No 1
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=72.73 E-value=18 Score=35.91 Aligned_cols=89 Identities=8% Similarity=0.003 Sum_probs=60.3
Q ss_pred ccchhhHHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhch
Q 043671 345 AWSVSEKYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELKM 424 (525)
Q Consensus 345 s~S~RlkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~ 424 (525)
+++..+---|+||-.|+..... -..+.+.....=+-+..++ .++|.++|..+.++++..++++++|++++++.++.
T Consensus 296 ~~~~~~~EAma~G~PvI~~~~~---~~~e~v~~~~~g~~~~~~d-~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~ 371 (394)
T 2jjm_A 296 SFGLVLLEAMACGVPCIGTRVG---GIPEVIQHGDTGYLCEVGD-TTGVADQAIQLLKDEELHRNMGERARESVYEQFRS 371 (394)
T ss_dssp SCCHHHHHHHHTTCCEEEECCT---TSTTTCCBTTTEEEECTTC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCH
T ss_pred CCchHHHHHHhcCCCEEEecCC---ChHHHhhcCCceEEeCCCC-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCH
Confidence 3455566678999887776532 1223333333323333322 37899999999999999999999999999888988
Q ss_pred hhHHHHHHHHHHH
Q 043671 425 DYVYDYMFHLLNQ 437 (525)
Q Consensus 425 ~~v~~Y~~~LL~e 437 (525)
+.+..-+..++.+
T Consensus 372 ~~~~~~~~~~~~~ 384 (394)
T 2jjm_A 372 EKIVSQYETIYYD 384 (394)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8876655555543
No 2
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=70.75 E-value=15 Score=36.00 Aligned_cols=92 Identities=10% Similarity=-0.002 Sum_probs=60.5
Q ss_pred cchhhHHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhchh
Q 043671 346 WSVSEKYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELKMD 425 (525)
Q Consensus 346 ~S~RlkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~~ 425 (525)
++..+---|+||-.|+..+.. -..+.+... .=+-+..++ .++|.++|..+.++++..+++++++++++++.++.+
T Consensus 292 ~~~~~~Ea~a~G~PvI~~~~~---~~~e~i~~~-~g~~~~~~d-~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 366 (394)
T 3okp_A 292 LGIVYLEAQACGVPVIAGTSG---GAPETVTPA-TGLVVEGSD-VDKLSELLIELLDDPIRRAAMGAAGRAHVEAEWSWE 366 (394)
T ss_dssp SCHHHHHHHHTTCCEEECSST---TGGGGCCTT-TEEECCTTC-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTBHH
T ss_pred cCcHHHHHHHcCCCEEEeCCC---ChHHHHhcC-CceEeCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHH
Confidence 344455578888877775532 222333333 222233322 479999999999999999999999999999989888
Q ss_pred hHHHHHHHHHHHHHhhcccC
Q 043671 426 YVYDYMFHLLNQYSKLFRYQ 445 (525)
Q Consensus 426 ~v~~Y~~~LL~eYAkL~~~k 445 (525)
.+..-+..+ |.++.+-+
T Consensus 367 ~~~~~~~~~---~~~~~r~~ 383 (394)
T 3okp_A 367 IMGERLTNI---LQSEPRKL 383 (394)
T ss_dssp HHHHHHHHH---HHSCCC--
T ss_pred HHHHHHHHH---HHHhccCc
Confidence 766644444 45555443
No 3
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=64.28 E-value=33 Score=34.30 Aligned_cols=87 Identities=7% Similarity=-0.068 Sum_probs=56.7
Q ss_pred cchhhHHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhchh
Q 043671 346 WSVSEKYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELKMD 425 (525)
Q Consensus 346 ~S~RlkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~~ 425 (525)
++..+---|+||-.|+..+.. -..+.+.....=+-+..++ .++|.++|..+.++++..++++++|++++++ ++.+
T Consensus 338 ~~~~~~Eama~G~PvI~~~~~---~~~e~i~~~~~g~~~~~~d-~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~-~s~~ 412 (438)
T 3c48_A 338 FGLVAMEAQASGTPVIAARVG---GLPIAVAEGETGLLVDGHS-PHAWADALATLLDDDETRIRMGEDAVEHART-FSWA 412 (438)
T ss_dssp SCHHHHHHHHTTCCEEEESCT---THHHHSCBTTTEEEESSCC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-HHHH
T ss_pred CchHHHHHHHcCCCEEecCCC---ChhHHhhCCCcEEECCCCC-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh-CCHH
Confidence 444555678889877776532 1222233333322233222 3789999999999999999999999999988 7777
Q ss_pred hHHHHHHHHHHH
Q 043671 426 YVYDYMFHLLNQ 437 (525)
Q Consensus 426 ~v~~Y~~~LL~e 437 (525)
.+..-+..++.+
T Consensus 413 ~~~~~~~~~~~~ 424 (438)
T 3c48_A 413 ATAAQLSSLYND 424 (438)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 665544444433
No 4
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=63.51 E-value=13 Score=37.00 Aligned_cols=95 Identities=9% Similarity=0.086 Sum_probs=58.5
Q ss_pred cchhhHHHHhcCCeeeeecCc-cccccccCCCCcce-------------------eEecccCCCcccHHHHHHhcccChH
Q 043671 346 WSVSEKYILACDSVTLYVTPN-YTDFFTRGLIPMHH-------------------FWPMNVYDKCRSIKFAVDWGNNHTG 405 (525)
Q Consensus 346 ~S~RlkyLLac~SvVLk~~s~-y~e~f~~~L~P~~H-------------------YVPv~~d~~~sDL~~~v~w~~~hd~ 405 (525)
++.-+---|+||-.|+..+.. ..|. +..... .++.. | -++|.++| .+.++++
T Consensus 286 ~~~~~lEAma~G~PvI~s~~~g~~e~----v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~-d--~~~la~~i-~l~~~~~ 357 (413)
T 3oy2_A 286 FGLCSAEGAVLGKPLIISAVGGADDY----FSGDCVYKIKPSAWISVDDRDGIGGIEGII-D--VDDLVEAF-TFFKDEK 357 (413)
T ss_dssp SCHHHHHHHTTTCCEEEECCHHHHHH----SCTTTSEEECCCEEEECTTTCSSCCEEEEC-C--HHHHHHHH-HHTTSHH
T ss_pred CCcHHHHHHHcCCCEEEcCCCChHHH----HccCcccccccccccccccccCcceeeCCC-C--HHHHHHHH-HHhcCHH
Confidence 344445567888877765432 2222 333333 34333 2 37999999 9989999
Q ss_pred HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHhhcccCCCCCCC
Q 043671 406 KAQEIGRAASRFIQEELKMDYVYDYMFHLLNQYSKLFRYQPTIPTG 451 (525)
Q Consensus 406 ~Aq~IA~~g~~fa~~~L~~~~v~~Y~~~LL~eYAkL~~~kP~~~~~ 451 (525)
..+++++++++++++.++.+.+..- ++.-|.+++.-++.-.+|
T Consensus 358 ~~~~~~~~a~~~~~~~fs~~~~~~~---~~~~~~~~~~~~~~~~~g 400 (413)
T 3oy2_A 358 NRKEYGKRVQDFVKTKPTWDDISSD---IIDFFNSLLRVESRETPG 400 (413)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHH---HHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHH---HHHHHHHHHhhcCCCCCC
Confidence 9999999999999888888776654 444555666655443333
No 5
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=59.44 E-value=26 Score=29.98 Aligned_cols=72 Identities=6% Similarity=0.132 Sum_probs=47.0
Q ss_pred chhhHHHHhcCC-eeeeec--CccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhc
Q 043671 347 SVSEKYILACDS-VTLYVT--PNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELK 423 (525)
Q Consensus 347 S~RlkyLLac~S-vVLk~~--s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~ 423 (525)
+..+---|+||- .|+... ....|. +.....+++... .++|.++|..+.++++..+++++++++++ +.++
T Consensus 88 ~~~~~Eama~G~vPvi~~~~~~~~~~~----~~~~~~~~~~~~---~~~l~~~i~~l~~~~~~~~~~~~~~~~~~-~~~s 159 (166)
T 3qhp_A 88 AIACLEAISVGIVPVIANSPLSATRQF----ALDERSLFEPNN---AKDLSAKIDWWLENKLERERMQNEYAKSA-LNYT 159 (166)
T ss_dssp CHHHHHHHHTTCCEEEECCTTCGGGGG----CSSGGGEECTTC---HHHHHHHHHHHHHCHHHHHHHHHHHHHHH-HHHC
T ss_pred cHHHHHHHhcCCCcEEeeCCCCchhhh----ccCCceEEcCCC---HHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HHCC
Confidence 334445688997 766622 123333 333444555432 37999999999999999999999999998 5565
Q ss_pred hhh
Q 043671 424 MDY 426 (525)
Q Consensus 424 ~~~ 426 (525)
.+.
T Consensus 160 ~~~ 162 (166)
T 3qhp_A 160 LEN 162 (166)
T ss_dssp ---
T ss_pred hhh
Confidence 443
No 6
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=57.23 E-value=18 Score=35.73 Aligned_cols=95 Identities=9% Similarity=-0.009 Sum_probs=63.0
Q ss_pred CCccchhhHHHHhcCCeeeeecCc-cccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHH
Q 043671 343 GSAWSVSEKYILACDSVTLYVTPN-YTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEE 421 (525)
Q Consensus 343 G~s~S~RlkyLLac~SvVLk~~s~-y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~ 421 (525)
+-+++..+---|+||-.|+..... ..|. +....+=+-+..++ .++|.++|..+.++++..++++++|+++++ .
T Consensus 293 ~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~----i~~~~~g~~~~~~d-~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~-~ 366 (406)
T 2gek_A 293 GESFGIVLVEAMAAGTAVVASDLDAFRRV----LADGDAGRLVPVDD-ADGMAAALIGILEDDQLRAGYVARASERVH-R 366 (406)
T ss_dssp CCSSCHHHHHHHHHTCEEEECCCHHHHHH----HTTTTSSEECCTTC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHGG-G
T ss_pred CCCCchHHHHHHHcCCCEEEecCCcHHHH----hcCCCceEEeCCCC-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 345555666678999988876542 2233 33333322233222 478999999999999999999999999998 7
Q ss_pred hchhhHHHHHHHHHHHHHhhcccCC
Q 043671 422 LKMDYVYDYMFHLLNQYSKLFRYQP 446 (525)
Q Consensus 422 L~~~~v~~Y~~~LL~eYAkL~~~kP 446 (525)
++.+.+..-+..++ .+++.-++
T Consensus 367 ~s~~~~~~~~~~~~---~~~~~~~~ 388 (406)
T 2gek_A 367 YDWSVVSAQIMRVY---ETVSGAGI 388 (406)
T ss_dssp GBHHHHHHHHHHHH---HHHCCTTC
T ss_pred CCHHHHHHHHHHHH---HHHHhhcc
Confidence 88777666555544 45555444
No 7
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=52.46 E-value=32 Score=34.30 Aligned_cols=83 Identities=7% Similarity=0.026 Sum_probs=57.1
Q ss_pred cchhhHHHHhcCCeeeeecCc-cccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhch
Q 043671 346 WSVSEKYILACDSVTLYVTPN-YTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELKM 424 (525)
Q Consensus 346 ~S~RlkyLLac~SvVLk~~s~-y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~ 424 (525)
++..+---|+||-.|+..+.. ..|. +.....=+-+. | .++|.++|..+.++++..++++++|++++++.++.
T Consensus 328 ~~~~~lEAma~G~PvI~~~~~g~~e~----i~~~~~g~l~~-d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~ 400 (416)
T 2x6q_A 328 FGLTVTEAMWKGKPVIGRAVGGIKFQ----IVDGETGFLVR-D--ANEAVEVVLYLLKHPEVSKEMGAKAKERVRKNFII 400 (416)
T ss_dssp SCHHHHHHHHTTCCEEEESCHHHHHH----CCBTTTEEEES-S--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTBH
T ss_pred CccHHHHHHHcCCCEEEccCCCChhh----eecCCCeEEEC-C--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCH
Confidence 444556678899988876632 2232 22222222222 4 37899999999999999999999999999988888
Q ss_pred hhHHHHHHHHH
Q 043671 425 DYVYDYMFHLL 435 (525)
Q Consensus 425 ~~v~~Y~~~LL 435 (525)
+.+..-+..++
T Consensus 401 ~~~~~~~~~~~ 411 (416)
T 2x6q_A 401 TKHMERYLDIL 411 (416)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77665444444
No 8
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=43.23 E-value=73 Score=32.69 Aligned_cols=87 Identities=6% Similarity=-0.056 Sum_probs=57.8
Q ss_pred cchhhHHHHhcCCeeeeecC-ccccccccCCCCcceeEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHHhch
Q 043671 346 WSVSEKYILACDSVTLYVTP-NYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEELKM 424 (525)
Q Consensus 346 ~S~RlkyLLac~SvVLk~~s-~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~L~~ 424 (525)
++..+---|+||-.|+..+. ...|. +.....=+-+..++ .++|.++|..+.++++..++++++|++++.+.++.
T Consensus 371 ~~~~~lEAma~G~PvI~s~~~g~~e~----v~~~~~g~l~~~~d-~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~ 445 (499)
T 2r60_A 371 FGLAPVEAMASGLPAVVTRNGGPAEI----LDGGKYGVLVDPED-PEDIARGLLKAFESEETWSAYQEKGKQRVEERYTW 445 (499)
T ss_dssp CCSHHHHHHHTTCCEEEESSBHHHHH----TGGGTSSEEECTTC-HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSBH
T ss_pred CCcHHHHHHHcCCCEEEecCCCHHHH----hcCCceEEEeCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCH
Confidence 33445556888988877653 22333 23332211222221 37899999999999999999999999999998888
Q ss_pred hhHHHHHHHHHHH
Q 043671 425 DYVYDYMFHLLNQ 437 (525)
Q Consensus 425 ~~v~~Y~~~LL~e 437 (525)
+.+..-+..++.+
T Consensus 446 ~~~~~~~~~~y~~ 458 (499)
T 2r60_A 446 QETARGYLEVIQE 458 (499)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8776655554443
No 9
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=42.72 E-value=44 Score=29.42 Aligned_cols=68 Identities=4% Similarity=-0.046 Sum_probs=45.6
Q ss_pred chhhHHHHhcCCeeeeecCc-cccccccCCCCcceeEecccCCCcccHHHHHHhccc-ChHHHHHHHHHHHHHHHH
Q 043671 347 SVSEKYILACDSVTLYVTPN-YTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNN-HTGKAQEIGRAASRFIQE 420 (525)
Q Consensus 347 S~RlkyLLac~SvVLk~~s~-y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~-hd~~Aq~IA~~g~~fa~~ 420 (525)
+..+---|+||-.|+..... +.|+. ...+-+-+..+. .++|.++|..+.+ ++++.+++++++++++++
T Consensus 129 ~~~~~Ea~a~G~PvI~~~~~~~~e~~-----~~~~g~~~~~~~-~~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~ 198 (200)
T 2bfw_A 129 GLVALEAMCLGAIPIASAVGGLRDII-----TNETGILVKAGD-PGELANAILKALELSRSDLSKFRENCKKRAMS 198 (200)
T ss_dssp CHHHHHHHHTTCEEEEESCHHHHHHC-----CTTTCEEECTTC-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCCEEEeCCCChHHHc-----CCCceEEecCCC-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 34445567888877776543 22332 222222233222 3789999999999 999999999999999876
No 10
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=42.67 E-value=25 Score=34.08 Aligned_cols=87 Identities=5% Similarity=-0.024 Sum_probs=56.0
Q ss_pred ccchhhHHHHhcCCeeeeecC-ccccccccCCCCcceeEecc--cCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHH
Q 043671 345 AWSVSEKYILACDSVTLYVTP-NYTDFFTRGLIPMHHFWPMN--VYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEE 421 (525)
Q Consensus 345 s~S~RlkyLLac~SvVLk~~s-~y~e~f~~~L~P~~HYVPv~--~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~ 421 (525)
+++..+---|+||-.|+..+. ...|.. .....=+-+. .| .++|.++|..+.++++..++++++|++++.++
T Consensus 282 ~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i----~~~~~g~~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 355 (374)
T 2iw1_A 282 AAGIVLLEAITAGLPVLTTAVCGYAHYI----ADANCGTVIAEPFS--QEQLNEVLRKALTQSPLRMAWAENARHYADTQ 355 (374)
T ss_dssp SSCHHHHHHHHHTCCEEEETTSTTTHHH----HHHTCEEEECSSCC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHS
T ss_pred CcccHHHHHHHCCCCEEEecCCCchhhh----ccCCceEEeCCCCC--HHHHHHHHHHHHcChHHHHHHHHHHHHHHHHh
Confidence 344555567888888887653 222322 1112211122 23 37899999999999999999999999999876
Q ss_pred hchhhHHHHHHHHHHHH
Q 043671 422 LKMDYVYDYMFHLLNQY 438 (525)
Q Consensus 422 L~~~~v~~Y~~~LL~eY 438 (525)
+...+..-+.+++.+|
T Consensus 356 -~~~~~~~~~~~~l~~~ 371 (374)
T 2iw1_A 356 -DLYSLPEKAADIITGG 371 (374)
T ss_dssp -CCSCHHHHHHHHHHCC
T ss_pred -hHHHHHHHHHHHHHHh
Confidence 5555555555555543
No 11
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=30.52 E-value=73 Score=36.21 Aligned_cols=89 Identities=10% Similarity=0.125 Sum_probs=57.6
Q ss_pred cchhhHHHHhcCCeeeeecCc-cccccccCCCCcceeEecccCCCcccHHHHHHhcc----cChHHHHHHHHHHHHHHHH
Q 043671 346 WSVSEKYILACDSVTLYVTPN-YTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGN----NHTGKAQEIGRAASRFIQE 420 (525)
Q Consensus 346 ~S~RlkyLLac~SvVLk~~s~-y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~----~hd~~Aq~IA~~g~~fa~~ 420 (525)
++.-+---|+||-.|+..... ..|. +.....=+-++.++ .++|.++|..+. .+++..++++++|++++.+
T Consensus 677 fglvllEAMA~G~PVIasd~GG~~Ei----V~dg~~Gllv~p~D-~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~ 751 (816)
T 3s28_A 677 FGLTVVEAMTCGLPTFATCKGGPAEI----IVHGKSGFHIDPYH-GDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEE 751 (816)
T ss_dssp SCHHHHHHHHTTCCEEEESSBTHHHH----CCBTTTBEEECTTS-HHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCEEEeCCCChHHH----HccCCcEEEeCCCC-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 333444568888877776432 2222 23333322233322 367888885544 8999999999999999999
Q ss_pred HhchhhHHHHHHHHHHHHH
Q 043671 421 ELKMDYVYDYMFHLLNQYS 439 (525)
Q Consensus 421 ~L~~~~v~~Y~~~LL~eYA 439 (525)
.++.+.+..=+..+...|.
T Consensus 752 ~fSwe~~a~~ll~lY~~~g 770 (816)
T 3s28_A 752 KYTWQIYSQRLLTLTGVYG 770 (816)
T ss_dssp SCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHh
Confidence 9988877766666665554
No 12
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=27.71 E-value=71 Score=20.34 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 043671 34 YALFAFIFLLLVGALISTRLL 54 (525)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~ 54 (525)
.++.+++++.++|+.+.-+|+
T Consensus 5 VA~~lLIviav~aaVllylW~ 25 (26)
T 3j1r_A 5 IATLLLILIAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456777777888888888886
No 13
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=26.30 E-value=36 Score=23.21 Aligned_cols=19 Identities=16% Similarity=0.130 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhhcccc
Q 043671 39 FIFLLLVGALISTRLLDST 57 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~ 57 (525)
+..++++|++|...|+.+.
T Consensus 9 l~~V~ilg~~I~i~W~~vf 27 (34)
T 3s8f_C 9 LAVILVLTLTILVFWLGVY 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHHHH
Confidence 4456677888888888764
No 14
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=22.09 E-value=1.4e+02 Score=29.33 Aligned_cols=88 Identities=5% Similarity=0.048 Sum_probs=56.3
Q ss_pred cchhhHHHHhcCCeeeeecCc-cccccccCCCCcceeEecccCCCcccHHHHHHhccc-ChHHHHHHHHHHHHHHHHHhc
Q 043671 346 WSVSEKYILACDSVTLYVTPN-YTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGNN-HTGKAQEIGRAASRFIQEELK 423 (525)
Q Consensus 346 ~S~RlkyLLac~SvVLk~~s~-y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~-hd~~Aq~IA~~g~~fa~~~L~ 423 (525)
++..+---|+||-.|+..+.. ..|. +....-++ +..++ -++|.++|..+.+ +++..++++++|++++ +.++
T Consensus 343 ~~~~~~EAma~G~Pvi~s~~~~~~e~----~~~~~g~~-~~~~d-~~~la~~i~~ll~~~~~~~~~~~~~~~~~~-~~~s 415 (439)
T 3fro_A 343 FGLVALEAMCLGAIPIASAVGGLRDI----ITNETGIL-VKAGD-PGELANAILKALELSRSDLSKFRENCKKRA-MSFS 415 (439)
T ss_dssp SCHHHHHHHHTTCEEEEESSTHHHHH----CCTTTCEE-ECTTC-HHHHHHHHHHHHHHTTTTTHHHHHHHHHHH-HTSC
T ss_pred ccHHHHHHHHCCCCeEEcCCCCccee----EEcCceEE-eCCCC-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-hhCc
Confidence 334444568899887776532 2233 22332222 33222 3789999998887 8999999999999999 5687
Q ss_pred hhhHHHHHHHHHHHHHhhcc
Q 043671 424 MDYVYDYMFHLLNQYSKLFR 443 (525)
Q Consensus 424 ~~~v~~Y~~~LL~eYAkL~~ 443 (525)
.+.+.. +++.-|.++++
T Consensus 416 ~~~~~~---~~~~~~~~~~~ 432 (439)
T 3fro_A 416 WEKSAE---RYVKAYTGSID 432 (439)
T ss_dssp HHHHHH---HHHHHHHTCSC
T ss_pred HHHHHH---HHHHHHHHHHH
Confidence 776554 44455555543
No 15
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=20.61 E-value=63 Score=23.60 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=29.5
Q ss_pred CCCCCCCCC--CC---ChhHHHHHHHHhhhHHHHHHHHHHHH
Q 043671 482 ETSPCTLPP--PY---DPSSLYDVLREKENSILQVESWVKAY 518 (525)
Q Consensus 482 ~~~pc~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (525)
..+||.|.. -| ..+.|+++-++-+.+.+++|..|+.+
T Consensus 5 ~edpC~CEslv~FQ~~v~~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 5 EEDPCECKSIVKFQTKVEELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp SSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 457999965 23 56778899999999999999998865
Done!