Query 043671
Match_columns 525
No_of_seqs 268 out of 832
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 12:13:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043671.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043671hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iw1a1 c.87.1.8 (A:2-371) Lip 28.9 34 0.0024 30.1 5.7 71 346-421 282-354 (370)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 28.4 29 0.0021 20.8 3.3 19 36-54 5-23 (30)
3 d2bisa1 c.87.1.8 (A:1-437) Gly 28.4 37 0.0027 31.1 6.0 87 346-442 341-429 (437)
4 d1veha_ d.52.8.1 (A:) HIRA-int 19.8 66 0.0048 24.6 4.9 49 158-209 39-89 (92)
5 d2bfwa1 c.87.1.8 (A:218-413) G 17.7 75 0.0054 26.1 5.3 71 345-420 123-194 (196)
6 d2dt7b1 a.217.1.1 (B:134-217) 13.9 65 0.0047 24.1 3.4 35 406-440 37-84 (84)
7 d1dy2a_ d.169.1.5 (A:) Endosta 11.2 85 0.0062 26.6 3.6 17 270-289 100-116 (168)
8 d1poia_ c.124.1.2 (A:) Glutaco 11.0 80 0.0058 29.3 3.7 47 471-518 232-280 (317)
9 d2nxoa1 c.94.1.1 (A:5-281) Hyp 9.8 50 0.0037 29.0 1.7 23 391-413 203-225 (277)
10 d1s16a1 d.14.1.3 (A:1217-1383) 9.7 1.1E+02 0.0081 25.6 3.9 25 398-422 140-164 (167)
No 1
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}
Probab=28.93 E-value=34 Score=30.13 Aligned_cols=71 Identities=4% Similarity=0.005 Sum_probs=47.1
Q ss_pred cchhhHHHHhcCCeeeeecCc-cccccccCCCCcce-eEecccCCCcccHHHHHHhcccChHHHHHHHHHHHHHHHHH
Q 043671 346 WSVSEKYILACDSVTLYVTPN-YTDFFTRGLIPMHH-FWPMNVYDKCRSIKFAVDWGNNHTGKAQEIGRAASRFIQEE 421 (525)
Q Consensus 346 ~S~RlkyLLac~SvVLk~~s~-y~e~f~~~L~P~~H-YVPv~~d~~~sDL~~~v~w~~~hd~~Aq~IA~~g~~fa~~~ 421 (525)
++..+---|+||-.|+..+.. ..|. +..... ++-++..+ -++|.++|..+.++++..++++++|+++++++
T Consensus 282 ~~~~~~EAma~G~PvI~s~~~g~~e~----i~~~~~G~l~~~~~d-~~~la~~i~~ll~d~~~~~~~~~~ar~~~~~~ 354 (370)
T d2iw1a1 282 AGIVLLEAITAGLPVLTTAVCGYAHY----IADANCGTVIAEPFS-QEQLNEVLRKALTQSPLRMAWAENARHYADTQ 354 (370)
T ss_dssp SCHHHHHHHHHTCCEEEETTSTTTHH----HHHHTCEEEECSSCC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHS
T ss_pred ccceeeecccCCeeEEEeCCCChHHH----hcCCCceEEEcCCCC-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 444555678889877765421 2222 223333 22223221 37899999999999999999999999999764
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=28.43 E-value=29 Score=20.83 Aligned_cols=19 Identities=16% Similarity=0.471 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 043671 36 LFAFIFLLLVGALISTRLL 54 (525)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~ 54 (525)
+.+|++..++|+|+++..+
T Consensus 5 ~yv~ifac~i~lfffaiff 23 (30)
T d2axtt1 5 TYVFIFACIIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred ehHHHHHHHHHHHHHHHHh
Confidence 5677788889999988875
No 3
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=28.41 E-value=37 Score=31.15 Aligned_cols=87 Identities=5% Similarity=0.038 Sum_probs=54.9
Q ss_pred cchhhHHHHhcCCeeeeecCc-cccccccCCCCcceeEecccCCCcccHHHHHHhcc-cChHHHHHHHHHHHHHHHHHhc
Q 043671 346 WSVSEKYILACDSVTLYVTPN-YTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGN-NHTGKAQEIGRAASRFIQEELK 423 (525)
Q Consensus 346 ~S~RlkyLLac~SvVLk~~s~-y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~-~hd~~Aq~IA~~g~~fa~~~L~ 423 (525)
++..+---|+||-.|+..... ..|. +.....|+ ++..+ -++|.++|..+. .+++..+++++++++.+++ ++
T Consensus 341 ~~~~~~Eama~G~Pvi~~~~g~~~e~----i~~~~G~~-~~~~d-~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~-~s 413 (437)
T d2bisa1 341 FGLVALEAMCLGAIPIASAVGGLRDI----ITNETGIL-VKAGD-PGELANAILKALELSRSDLSKFRENCKKRAMS-FS 413 (437)
T ss_dssp SCHHHHHHHTTTCEEEEESCTTHHHH----CCTTTCEE-ECTTC-HHHHHHHHHHHHTTTTSCTHHHHHHHHHHHHH-SC
T ss_pred cchHHHHHHHCCCCEEEeCCCCcHHh----EECCcEEE-ECCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-CC
Confidence 334445558899988866532 2222 22223343 22221 368999997755 5778899999999999864 78
Q ss_pred hhhHHHHHHHHHHHHHhhc
Q 043671 424 MDYVYDYMFHLLNQYSKLF 442 (525)
Q Consensus 424 ~~~v~~Y~~~LL~eYAkL~ 442 (525)
.+.+.. +++.-|.+++
T Consensus 414 ~~~~a~---~~~~iY~~~i 429 (437)
T d2bisa1 414 WEKSAE---RYVKAYTGSI 429 (437)
T ss_dssp HHHHHH---HHHHHHHTCS
T ss_pred HHHHHH---HHHHHHHHHH
Confidence 777654 5555677765
No 4
>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.79 E-value=66 Score=24.56 Aligned_cols=49 Identities=18% Similarity=0.112 Sum_probs=34.7
Q ss_pred EEEEECCEEEEEcccccccc-hhHHHH-HHHHHHHHhcCCCCCCeEEEEecCCC
Q 043671 158 RLVIVKGRAYVKRNIKAFQS-RDTFTL-WGILQLLRRYPGKIPDLDLMFDCVDW 209 (525)
Q Consensus 158 rv~I~nGrlyv~~~~~~~~s-R~~~tl-~~ll~llr~~p~~LPDvEf~fn~~D~ 209 (525)
-+-|.+|.|||.-.+.+-.= -...|+ .+|.++|+. .+|++.=+.++.|.
T Consensus 39 lv~v~~g~V~v~l~GaC~gCp~s~~Tlk~~Ie~~L~~---~vpev~~V~~v~~~ 89 (92)
T d1veha_ 39 YRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQF---YIPEVEGVEQVSGP 89 (92)
T ss_dssp EEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHH---HCSSCCCEEECSCS
T ss_pred EEEeeCCeEEEEEccCCCCChhHHHHHHHHHHHHHHH---HCCCcceEEEcCCC
Confidence 36789999999887654321 112344 678888886 58999888888774
No 5
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=17.70 E-value=75 Score=26.09 Aligned_cols=71 Identities=3% Similarity=-0.079 Sum_probs=45.8
Q ss_pred ccchhhHHHHhcCCeeeeecCccccccccCCCCcceeEecccCCCcccHHHHHHhcc-cChHHHHHHHHHHHHHHHH
Q 043671 345 AWSVSEKYILACDSVTLYVTPNYTDFFTRGLIPMHHFWPMNVYDKCRSIKFAVDWGN-NHTGKAQEIGRAASRFIQE 420 (525)
Q Consensus 345 s~S~RlkyLLac~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~-~hd~~Aq~IA~~g~~fa~~ 420 (525)
+++..+---|+||-+|+....... .+.+.....|+ +..++ ..+|.++|..+. ...+..++|+++|++.+.+
T Consensus 123 ~~~~~~~Eam~~G~pvI~~~~~~~---~e~i~~~~g~~-~~~~~-~~~l~~~i~~~l~~~~~~~~~~~~~a~~~a~~ 194 (196)
T d2bfwa1 123 PFGLVALEAMCLGAIPIASAVGGL---RDIITNETGIL-VKAGD-PGELANAILKALELSRSDLSKFRENCKKRAMS 194 (196)
T ss_dssp SSCHHHHHHHHTTCEEEEESCHHH---HHHCCTTTCEE-ECTTC-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhcCceeeecCCCcc---ceeecCCceee-ECCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 345666678999998888764322 12122223343 33332 368888887654 4678899999999998865
No 6
>d2dt7b1 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.86 E-value=65 Score=24.06 Aligned_cols=35 Identities=29% Similarity=0.575 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHH------------Hhch-hhHHHHHHHHHHHHHh
Q 043671 406 KAQEIGRAASRFIQE------------ELKM-DYVYDYMFHLLNQYSK 440 (525)
Q Consensus 406 ~Aq~IA~~g~~fa~~------------~L~~-~~v~~Y~~~LL~eYAk 440 (525)
-|+-+|++|.+|-.. +|++ .....|+.++|.+|++
T Consensus 37 tA~fVa~~G~~fe~~l~~~~~~Np~F~FL~~~~~~~~yY~~lv~~Y~~ 84 (84)
T d2dt7b1 37 TAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTK 84 (84)
T ss_dssp HHHHHHHHCHHHHHHHHHHTTTCGGGGGGSTTSTHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCHHHHHHHHHcccCCCceeccCCCCcCcHHHHHHHHHHhC
Confidence 366677777766432 3322 3457899999999974
No 7
>d1dy2a_ d.169.1.5 (A:) Endostatin domain of collagen alpha1(xv) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.17 E-value=85 Score=26.59 Aligned_cols=17 Identities=18% Similarity=0.544 Sum_probs=11.3
Q ss_pred CCCCCCCcCCceEeeeCCCC
Q 043671 270 RRMNWTDREPYAYWKGNPVV 289 (525)
Q Consensus 270 ~~~pW~~K~pkafWRG~~t~ 289 (525)
.+.-|.+ |++|-|+...
T Consensus 100 ~D~~WP~---K~vWHGS~~~ 116 (168)
T d1dy2a_ 100 TDPSWPQ---KVVWHGSNPH 116 (168)
T ss_dssp TCTTCSS---CEEECCBCTT
T ss_pred cCCCCcc---ceEEecCCCC
Confidence 3556666 4699998763
No 8
>d1poia_ c.124.1.2 (A:) Glutaconate:CoA transferase alpha {Acidaminococcus fermentans [TaxId: 905]}
Probab=11.00 E-value=80 Score=29.27 Aligned_cols=47 Identities=13% Similarity=0.178 Sum_probs=32.0
Q ss_pred HhhhhhccCCCCCCCCCCCCCC--ChhHHHHHHHHhhhHHHHHHHHHHHH
Q 043671 471 LMEESLEQSPKETSPCTLPPPY--DPSSLYDVLREKENSILQVESWVKAY 518 (525)
Q Consensus 471 ~~~~s~~~~p~~~~pc~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (525)
++.+-.|..|-..+||.|++-| |.+.++++.+- ++...-.+.|-++|
T Consensus 232 ~~VDaVV~aP~GAhP~~~~g~Y~~D~~~~~~y~~~-a~~~~~~~~~~~~~ 280 (317)
T d1poia_ 232 MCVDAVVLAPYGAHPSQCYGLYDYDNPFLKVYDKV-SKTQEDFDAFCKEW 280 (317)
T ss_dssp GGCCEEEECTTTTTTSBBTTTBCCCHHHHHHHHHH-TTSHHHHHHHHHHH
T ss_pred hheEEEEecCCCcCCcCCcCccccCHHHHHHHHHH-hcCHHHHHHHHHHH
Confidence 5677788899999999999965 77888877753 22223344454443
No 9
>d2nxoa1 c.94.1.1 (A:5-281) Hypothetical protein SCo4506 {Streptomyces coelicolor [TaxId: 1902]}
Probab=9.75 E-value=50 Score=28.96 Aligned_cols=23 Identities=9% Similarity=0.013 Sum_probs=18.0
Q ss_pred ccHHHHHHhcccChHHHHHHHHH
Q 043671 391 RSIKFAVDWGNNHTGKAQEIGRA 413 (525)
Q Consensus 391 sDL~~~v~w~~~hd~~Aq~IA~~ 413 (525)
.-+.++++|+++||++|.+|+.+
T Consensus 203 ~a~~~a~~~~~~~p~ea~~~~a~ 225 (277)
T d2nxoa1 203 EAFLASRNLSLEEVEKVAEQAAR 225 (277)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCHHHHHHHHHH
Confidence 35667888999999999887654
No 10
>d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}
Probab=9.69 E-value=1.1e+02 Score=25.60 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=20.5
Q ss_pred HhcccChHHHHHHHHHHHHHHHHHh
Q 043671 398 DWGNNHTGKAQEIGRAASRFIQEEL 422 (525)
Q Consensus 398 ~w~~~hd~~Aq~IA~~g~~fa~~~L 422 (525)
.|++.||+.|+.|.+.+..-++..+
T Consensus 140 ~~l~~np~~a~~i~~k~i~~~~~R~ 164 (167)
T d1s16a1 140 LWLNQNVQAAELLAEMAISSAQRRM 164 (167)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999998887665443
Done!