Query 043672
Match_columns 260
No_of_seqs 102 out of 121
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 07:13:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043672.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043672hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07816 DUF1645: Protein of u 95.6 0.0041 8.9E-08 54.4 0.7 14 60-73 1-14 (193)
2 PLN02528 2-oxoisovalerate dehy 24.6 35 0.00076 33.5 1.0 25 215-249 336-360 (416)
3 TIGR01347 sucB 2-oxoglutarate 22.0 42 0.00091 33.0 1.0 26 215-250 325-350 (403)
4 PRK11857 dihydrolipoamide acet 20.6 53 0.0012 31.1 1.4 26 215-250 229-254 (306)
5 TIGR01162 purE phosphoribosyla 17.8 35 0.00076 29.9 -0.5 25 222-251 73-97 (156)
6 TIGR02927 SucB_Actino 2-oxoglu 16.4 67 0.0014 33.1 1.0 22 221-249 509-530 (590)
7 PRK14843 dihydrolipoamide acet 16.4 69 0.0015 30.9 1.1 25 215-249 271-295 (347)
8 PRK05704 dihydrolipoamide succ 16.3 66 0.0014 31.6 0.9 26 215-250 329-354 (407)
9 TIGR01349 PDHac_trf_mito pyruv 16.2 66 0.0014 31.8 1.0 26 215-250 356-381 (435)
10 PTZ00144 dihydrolipoamide succ 14.8 81 0.0018 31.4 1.2 26 215-250 340-365 (418)
No 1
>PF07816 DUF1645: Protein of unknown function (DUF1645); InterPro: IPR012442 These sequences are derived from a number of hypothetical plant proteins. The region in question is approximately 270 amino acids long. Some members of this family are annotated as yeast pheromone receptor proteins AR781 but no literature was found to support this.
Probab=95.62 E-value=0.0041 Score=54.44 Aligned_cols=14 Identities=64% Similarity=1.165 Sum_probs=13.7
Q ss_pred hhhhccCCeeeccc
Q 043672 60 ADELFSNGRILPMQ 73 (260)
Q Consensus 60 ADELFs~GkiLP~~ 73 (260)
|||||.+|||.||.
T Consensus 1 ADELF~~GkIrPl~ 14 (193)
T PF07816_consen 1 ADELFDNGKIRPLK 14 (193)
T ss_pred CcccccCCEEeecC
Confidence 89999999999998
No 2
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=24.59 E-value=35 Score=33.54 Aligned_cols=25 Identities=40% Similarity=0.642 Sum_probs=20.8
Q ss_pred CCcCCCCceEecccccCCCCcccccccccccccee
Q 043672 215 GSYNGHNGVRISPVLNIPPPFISNATVSLFGFGSL 249 (260)
Q Consensus 215 Gsy~ggngvrvsPVLNvP~~~i~~~~~nlFGlGS~ 249 (260)
|.| |+..+-||||-|..+| +|+|.|
T Consensus 336 G~~---G~~~~tpIin~pq~aI-------lgvG~i 360 (416)
T PLN02528 336 GAI---GGKFGSPVLNLPEVAI-------IALGRI 360 (416)
T ss_pred ccc---cCCceECcccCCceEE-------EEcccc
Confidence 666 4678899999999854 999997
No 3
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=22.04 E-value=42 Score=32.96 Aligned_cols=26 Identities=23% Similarity=0.567 Sum_probs=21.1
Q ss_pred CCcCCCCceEecccccCCCCccccccccccccceee
Q 043672 215 GSYNGHNGVRISPVLNIPPPFISNATVSLFGFGSLF 250 (260)
Q Consensus 215 Gsy~ggngvrvsPVLNvP~~~i~~~~~nlFGlGS~f 250 (260)
|.| ++....||||-|..+| +|+|+|.
T Consensus 325 G~~---G~~~~tpiin~pq~aI-------LgvG~i~ 350 (403)
T TIGR01347 325 GVF---GSLMSTPIINPPQSAI-------LGMHGIK 350 (403)
T ss_pred CcC---cccceeccccCCceEE-------Eecccce
Confidence 666 5678899999999855 8999974
No 4
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=20.64 E-value=53 Score=31.12 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=20.4
Q ss_pred CCcCCCCceEecccccCCCCccccccccccccceee
Q 043672 215 GSYNGHNGVRISPVLNIPPPFISNATVSLFGFGSLF 250 (260)
Q Consensus 215 Gsy~ggngvrvsPVLNvP~~~i~~~~~nlFGlGS~f 250 (260)
|.| ++....||||-|..+| +|+|.+-
T Consensus 229 G~~---G~~~~tpiIn~pq~aI-------LgvG~i~ 254 (306)
T PRK11857 229 GSV---GSLYGVPVINYPELAI-------AGVGAII 254 (306)
T ss_pred CCC---CccceecccCCCccce-------eecccce
Confidence 665 4567899999999865 8999873
No 5
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=17.76 E-value=35 Score=29.93 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=18.3
Q ss_pred ceEecccccCCCCccccccccccccceeee
Q 043672 222 GVRISPVLNIPPPFISNATVSLFGFGSLFC 251 (260)
Q Consensus 222 gvrvsPVLNvP~~~i~~~~~nlFGlGS~f~ 251 (260)
|.=.-|||+||..- .+|.|+-+||+
T Consensus 73 ~~t~~PVIgvP~~~-----~~l~G~daLlS 97 (156)
T TIGR01162 73 ALTPLPVIGVPVPS-----KALSGLDSLLS 97 (156)
T ss_pred hccCCCEEEecCCc-----cCCCCHHHHHH
Confidence 34467999999972 36888877764
No 6
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=16.41 E-value=67 Score=33.07 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=18.6
Q ss_pred CceEecccccCCCCcccccccccccccee
Q 043672 221 NGVRISPVLNIPPPFISNATVSLFGFGSL 249 (260)
Q Consensus 221 ngvrvsPVLNvP~~~i~~~~~nlFGlGS~ 249 (260)
++..+.||||-|..+| .|+|.|
T Consensus 509 G~~~~tpIIn~PqvaI-------LgvG~i 530 (590)
T TIGR02927 509 GALFDTPILIPPQAAI-------LGTGAI 530 (590)
T ss_pred CccceeceecCCCeEE-------EEcccc
Confidence 4577899999999865 899987
No 7
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=16.36 E-value=69 Score=30.91 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=20.1
Q ss_pred CCcCCCCceEecccccCCCCcccccccccccccee
Q 043672 215 GSYNGHNGVRISPVLNIPPPFISNATVSLFGFGSL 249 (260)
Q Consensus 215 Gsy~ggngvrvsPVLNvP~~~i~~~~~nlFGlGS~ 249 (260)
|.| ++....||||-|..+| .|+|.+
T Consensus 271 G~~---G~~~~tpIInpPq~aI-------lgvG~i 295 (347)
T PRK14843 271 GMF---GVQSFGPIINQPNSAI-------LGVSST 295 (347)
T ss_pred CCC---cccceeccccCCceEE-------EecCCc
Confidence 555 4677899999999865 899886
No 8
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=16.30 E-value=66 Score=31.63 Aligned_cols=26 Identities=23% Similarity=0.563 Sum_probs=20.9
Q ss_pred CCcCCCCceEecccccCCCCccccccccccccceee
Q 043672 215 GSYNGHNGVRISPVLNIPPPFISNATVSLFGFGSLF 250 (260)
Q Consensus 215 Gsy~ggngvrvsPVLNvP~~~i~~~~~nlFGlGS~f 250 (260)
|.| ++..+-||||-|..+| +|+|++.
T Consensus 329 G~~---G~~~~tpiIn~pq~aI-------LgvG~i~ 354 (407)
T PRK05704 329 GVF---GSLMSTPIINPPQSAI-------LGMHKIK 354 (407)
T ss_pred Ccc---cccceeccccCCcEEE-------EEcccce
Confidence 666 5678999999999854 8999874
No 9
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=16.23 E-value=66 Score=31.82 Aligned_cols=26 Identities=19% Similarity=0.427 Sum_probs=20.5
Q ss_pred CCcCCCCceEecccccCCCCccccccccccccceee
Q 043672 215 GSYNGHNGVRISPVLNIPPPFISNATVSLFGFGSLF 250 (260)
Q Consensus 215 Gsy~ggngvrvsPVLNvP~~~i~~~~~nlFGlGS~f 250 (260)
|.| ++...-||||-|..+| +|+|.+-
T Consensus 356 G~~---G~~~~tpiin~pq~aI-------lgvG~i~ 381 (435)
T TIGR01349 356 GMF---GIKDFTAIINPPQACI-------LAVGAVE 381 (435)
T ss_pred Ccc---CccceECccCCCceEE-------EEcccce
Confidence 665 4577899999999854 8999875
No 10
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=14.82 E-value=81 Score=31.44 Aligned_cols=26 Identities=23% Similarity=0.542 Sum_probs=21.3
Q ss_pred CCcCCCCceEecccccCCCCccccccccccccceee
Q 043672 215 GSYNGHNGVRISPVLNIPPPFISNATVSLFGFGSLF 250 (260)
Q Consensus 215 Gsy~ggngvrvsPVLNvP~~~i~~~~~nlFGlGS~f 250 (260)
|.| ++...-||||-|..+| +|+|.+-
T Consensus 340 G~~---G~~~~tpIInpPq~aI-------LgvG~i~ 365 (418)
T PTZ00144 340 GVF---GSLMGTPIINPPQSAI-------LGMHAIK 365 (418)
T ss_pred CCC---CcceeeeeecCCceEE-------Eecccce
Confidence 666 5688999999999965 8999874
Done!