Query 043672
Match_columns 260
No_of_seqs 102 out of 121
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 12:14:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043672.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043672hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wh6_A Early antigen protein R 19.5 27 0.00093 30.0 0.4 10 59-68 99-108 (173)
2 3mae_A 2-oxoisovalerate dehydr 14.5 54 0.0018 28.9 1.1 27 215-251 169-195 (256)
3 3trh_A Phosphoribosylaminoimid 13.8 25 0.00086 30.0 -1.2 24 223-251 82-105 (169)
4 2ywx_A Phosphoribosylaminoimid 12.0 26 0.00089 29.6 -1.6 24 222-251 71-94 (157)
5 1xmp_A PURE, phosphoribosylami 11.9 26 0.00088 30.0 -1.7 24 223-251 87-110 (170)
6 3oow_A Phosphoribosylaminoimid 11.7 32 0.0011 29.3 -1.2 23 223-250 81-103 (166)
7 3kuu_A Phosphoribosylaminoimid 11.6 26 0.00091 30.1 -1.7 24 223-251 88-111 (174)
8 4grd_A N5-CAIR mutase, phospho 11.5 27 0.00092 30.0 -1.7 25 222-251 87-111 (173)
9 3ors_A N5-carboxyaminoimidazol 11.0 28 0.00097 29.5 -1.7 23 223-250 79-101 (163)
10 2ost_A Putative endonuclease; 10.9 92 0.0031 26.3 1.4 36 42-77 85-122 (151)
No 1
>2wh6_A Early antigen protein R; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Human herpesvirus 4} PDB: 2v6q_A 2xpx_A 1q59_A
Probab=19.46 E-value=27 Score=30.02 Aligned_cols=10 Identities=30% Similarity=0.418 Sum_probs=8.8
Q ss_pred chhhhccCCe
Q 043672 59 SADELFSNGR 68 (260)
Q Consensus 59 sADELFs~Gk 68 (260)
=|||||.+|.
T Consensus 99 VA~ELF~dG~ 108 (173)
T 2wh6_A 99 VFLEIFHRGD 108 (173)
T ss_dssp HHHHHHSSSC
T ss_pred HHHHHHhCCC
Confidence 5899999985
No 2
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=14.55 E-value=54 Score=28.89 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=20.9
Q ss_pred CCcCCCCceEecccccCCCCccccccccccccceeee
Q 043672 215 GSYNGHNGVRISPVLNIPPPFISNATVSLFGFGSLFC 251 (260)
Q Consensus 215 Gsy~ggngvrvsPVLNvP~~~i~~~~~nlFGlGS~f~ 251 (260)
|.| ++....||||-|..+ ++|+|.+..
T Consensus 169 G~~---G~~~ftpIInppq~a-------IL~vG~i~~ 195 (256)
T 3mae_A 169 GSF---GSVQSMGIINHPQAA-------ILQVESIVK 195 (256)
T ss_dssp GGG---TCSEEECCCCTTSSE-------EEEEEEEEE
T ss_pred CCC---CccceEcccCCCCce-------EEEecccEE
Confidence 555 456699999999874 489999864
No 3
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=13.77 E-value=25 Score=30.03 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=16.9
Q ss_pred eEecccccCCCCccccccccccccceeee
Q 043672 223 VRISPVLNIPPPFISNATVSLFGFGSLFC 251 (260)
Q Consensus 223 vrvsPVLNvP~~~i~~~~~nlFGlGS~f~ 251 (260)
.=.-|||+||.. +..|.|+-+|++
T Consensus 82 ~t~~PVIgVP~~-----~~~l~G~dsLlS 105 (169)
T 3trh_A 82 HTLKPVIGVPMA-----GGSLGGLDALLS 105 (169)
T ss_dssp TCSSCEEEEECC-----CSTTTTHHHHHH
T ss_pred cCCCCEEEeecC-----CCCCCCHHHHHH
Confidence 346799999987 236778777653
No 4
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=12.02 E-value=26 Score=29.60 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=17.2
Q ss_pred ceEecccccCCCCccccccccccccceeee
Q 043672 222 GVRISPVLNIPPPFISNATVSLFGFGSLFC 251 (260)
Q Consensus 222 gvrvsPVLNvP~~~i~~~~~nlFGlGS~f~ 251 (260)
|.=.-|||+||+. .+|-|+-++++
T Consensus 71 ~~t~~PVIgVP~~------~~l~G~daLlS 94 (157)
T 2ywx_A 71 SLTTKPVIAVPVD------AKLDGLDALLS 94 (157)
T ss_dssp TTCSSCEEEEEEC------SSGGGHHHHHH
T ss_pred hccCCCEEEecCC------CccCcHHHHHH
Confidence 3446799999982 37888877653
No 5
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=11.88 E-value=26 Score=30.04 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=17.3
Q ss_pred eEecccccCCCCccccccccccccceeee
Q 043672 223 VRISPVLNIPPPFISNATVSLFGFGSLFC 251 (260)
Q Consensus 223 vrvsPVLNvP~~~i~~~~~nlFGlGS~f~ 251 (260)
.=.-|||+||+. +.+|-|+-+|++
T Consensus 87 ~t~~PVIgVP~~-----~~~l~G~daLlS 110 (170)
T 1xmp_A 87 KTNLPVIGVPVQ-----SKALNGLDSLLS 110 (170)
T ss_dssp TCCSCEEEEEEC-----CTTTTTHHHHHH
T ss_pred ccCCCEEEeeCC-----CCCCCcHHHHHH
Confidence 346799999987 236888777654
No 6
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=11.72 E-value=32 Score=29.35 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=16.2
Q ss_pred eEecccccCCCCccccccccccccceee
Q 043672 223 VRISPVLNIPPPFISNATVSLFGFGSLF 250 (260)
Q Consensus 223 vrvsPVLNvP~~~i~~~~~nlFGlGS~f 250 (260)
.=.-|||+||+. +..|.|+-+|+
T Consensus 81 ~t~~PVIgVP~~-----~~~l~G~dsLl 103 (166)
T 3oow_A 81 KTTLPVLGVPVK-----SSTLNGQDSLL 103 (166)
T ss_dssp TCSSCEEEEECC-----CTTTTTHHHHH
T ss_pred ccCCCEEEeecC-----cCCCCCHHHHH
Confidence 346799999986 22567777665
No 7
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=11.65 E-value=26 Score=30.06 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=16.8
Q ss_pred eEecccccCCCCccccccccccccceeee
Q 043672 223 VRISPVLNIPPPFISNATVSLFGFGSLFC 251 (260)
Q Consensus 223 vrvsPVLNvP~~~i~~~~~nlFGlGS~f~ 251 (260)
.=.-|||+||.. +..|-|+-+|++
T Consensus 88 ~t~~PVIgVP~~-----~~~l~G~dsLlS 111 (174)
T 3kuu_A 88 KTLVPVLGVPVQ-----SAALSGVDSLYS 111 (174)
T ss_dssp TCSSCEEEEEEC-----CTTTTTHHHHHH
T ss_pred ccCCCEEEeeCC-----CCCCCCHHHHHH
Confidence 346799999986 235777776653
No 8
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=11.47 E-value=27 Score=30.01 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=17.4
Q ss_pred ceEecccccCCCCccccccccccccceeee
Q 043672 222 GVRISPVLNIPPPFISNATVSLFGFGSLFC 251 (260)
Q Consensus 222 gvrvsPVLNvP~~~i~~~~~nlFGlGS~f~ 251 (260)
|.=.-|||+||.. +..|-|+.++++
T Consensus 87 ~~t~~PVIgVPv~-----~~~l~G~dsLlS 111 (173)
T 4grd_A 87 AKTTVPVLGVPVA-----SKYLKGVDSLHS 111 (173)
T ss_dssp HHCCSCEEEEEEC-----CTTTTTHHHHHH
T ss_pred ecCCCCEEEEEcC-----CCCCCchhHHHH
Confidence 4456799999976 335677777654
No 9
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=11.03 E-value=28 Score=29.53 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=16.3
Q ss_pred eEecccccCCCCccccccccccccceee
Q 043672 223 VRISPVLNIPPPFISNATVSLFGFGSLF 250 (260)
Q Consensus 223 vrvsPVLNvP~~~i~~~~~nlFGlGS~f 250 (260)
.=.-|||+||.. +.+|-|+-+|+
T Consensus 79 ~t~~PVIgVP~~-----~~~l~G~dsLl 101 (163)
T 3ors_A 79 LTTLPVIGVPIE-----TKSLKGIDSLL 101 (163)
T ss_dssp HCSSCEEEEEEC-----CTTTTTHHHHH
T ss_pred ccCCCEEEeeCC-----CCCCCCHHHHH
Confidence 446799999986 22677777665
No 10
>2ost_A Putative endonuclease; protein-DNA complex, restriction enzyme fold,PD-(D/E)-XK MOT homing endonuclease, group I intron, hydrolase-DNA complex; 3.10A {Synechocystis SP}
Probab=10.92 E-value=92 Score=26.27 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=25.5
Q ss_pred CCceEeecCCCCCC--CCCchhhhccCCeeeccccccc
Q 043672 42 SDFDFCIGNNSFLQ--ELSSADELFSNGRILPMQIKKQ 77 (260)
Q Consensus 42 ~dFEF~~~~~s~~~--~~ssADELFs~GkiLP~~~~~~ 77 (260)
.||||++...-... -+.|+|+++.++.=|=+..++.
T Consensus 85 ~D~DFaVy~p~~d~~~Y~~Pv~~~~~~~~eiR~~~p~~ 122 (151)
T 2ost_A 85 NDFDFAVAYVEELELFYVFPVDVFISYGSEIHLVETDK 122 (151)
T ss_dssp TSCSEEEEEETTTTEEEEEEHHHHHTSSSEEEECCSSS
T ss_pred CcccEEEEccCCCeEEEEecHHHhCCCceEEEecCCcc
Confidence 67889997321233 3789999999998887764443
Done!