Query 043673
Match_columns 252
No_of_seqs 141 out of 171
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 07:14:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043673.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043673hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05042 Caleosin: Caleosin re 100.0 2.5E-96 6E-101 632.3 14.4 174 69-242 1-174 (174)
2 KOG0027 Calmodulin and related 95.3 0.043 9.4E-07 45.1 5.9 102 76-232 9-111 (151)
3 PF13499 EF-hand_7: EF-hand do 94.5 0.021 4.6E-07 40.0 1.6 60 82-190 7-66 (66)
4 PTZ00183 centrin; Provisional 94.4 0.086 1.9E-06 41.8 5.2 136 76-234 18-154 (158)
5 cd00051 EFh EF-hand, calcium b 93.2 0.11 2.4E-06 33.6 3.2 29 77-105 2-30 (63)
6 PTZ00184 calmodulin; Provision 92.9 0.29 6.2E-06 38.1 5.6 131 76-230 12-144 (149)
7 PF13499 EF-hand_7: EF-hand do 91.5 0.42 9.1E-06 33.4 4.6 64 165-231 1-65 (66)
8 PF13405 EF-hand_6: EF-hand do 91.4 0.11 2.3E-06 32.4 1.2 24 82-105 7-31 (31)
9 cd00051 EFh EF-hand, calcium b 90.7 1.2 2.6E-05 28.6 5.8 59 166-231 2-61 (63)
10 COG5126 FRQ1 Ca2+-binding prot 89.8 0.28 6E-06 42.7 2.8 131 76-231 21-153 (160)
11 PF13405 EF-hand_6: EF-hand do 89.2 0.28 6.2E-06 30.4 1.8 27 165-191 1-27 (31)
12 PF00036 EF-hand_1: EF hand; 88.8 0.33 7.1E-06 30.6 1.9 26 166-191 2-27 (29)
13 PF00036 EF-hand_1: EF hand; 86.3 0.41 8.8E-06 30.2 1.2 27 78-104 3-29 (29)
14 smart00054 EFh EF-hand, calciu 84.6 1.4 3E-05 24.1 2.9 27 166-192 2-28 (29)
15 smart00027 EH Eps15 homology d 84.5 1.4 3.1E-05 33.6 3.8 28 75-102 10-37 (96)
16 PF01023 S_100: S-100/ICaBP ty 84.2 0.71 1.5E-05 31.9 1.8 28 166-193 8-37 (44)
17 PTZ00184 calmodulin; Provision 79.5 2.2 4.7E-05 33.1 3.2 26 165-190 121-146 (149)
18 smart00027 EH Eps15 homology d 78.0 5.2 0.00011 30.5 4.8 57 164-229 10-67 (96)
19 cd05025 S-100A1 S-100A1: S-100 73.8 6.8 0.00015 29.6 4.5 30 163-192 51-80 (92)
20 KOG0027 Calmodulin and related 72.1 3.5 7.6E-05 33.8 2.7 65 76-193 86-150 (151)
21 PF13202 EF-hand_5: EF hand; P 71.6 3.2 6.8E-05 25.2 1.7 24 167-190 2-25 (25)
22 cd05024 S-100A10 S-100A10: A s 70.4 4.5 9.8E-05 32.2 2.9 25 167-192 11-35 (91)
23 cd00052 EH Eps15 homology doma 69.6 14 0.00031 25.1 5.0 54 166-228 1-55 (67)
24 cd05031 S-100A10_like S-100A10 67.4 10 0.00022 28.8 4.2 27 77-103 10-38 (94)
25 PF13833 EF-hand_8: EF-hand do 66.2 6 0.00013 26.7 2.5 32 161-192 22-53 (54)
26 cd00052 EH Eps15 homology doma 63.2 3.7 8.1E-05 28.1 1.0 25 82-106 6-30 (67)
27 PF12763 EF-hand_4: Cytoskelet 60.5 11 0.00024 30.3 3.4 55 164-228 10-65 (104)
28 PTZ00183 centrin; Provisional 59.7 25 0.00054 27.7 5.3 62 165-232 54-116 (158)
29 cd05022 S-100A13 S-100A13: S-1 58.2 9.4 0.0002 29.7 2.6 57 166-229 10-70 (89)
30 cd05029 S-100A6 S-100A6: S-100 55.6 9.8 0.00021 29.3 2.3 57 168-228 14-73 (88)
31 cd05023 S-100A11 S-100A11: S-1 53.3 24 0.00053 27.2 4.1 57 165-228 10-74 (89)
32 PF15192 TMEM213: TMEM213 fami 52.9 7.3 0.00016 30.7 1.1 28 196-223 41-72 (82)
33 KOG0044 Ca2+ sensor (EF-Hand s 52.8 21 0.00046 31.9 4.2 34 162-195 145-178 (193)
34 KOG0041 Predicted Ca2+-binding 51.6 14 0.0003 34.3 2.8 32 164-195 99-130 (244)
35 PF05901 Excalibur: Excalibur 50.8 6.8 0.00015 26.1 0.6 9 83-91 26-34 (37)
36 cd05026 S-100Z S-100Z: S-100Z 49.6 17 0.00036 28.0 2.7 64 166-231 12-78 (93)
37 KOG0030 Myosin essential light 44.6 7.3 0.00016 34.0 -0.0 103 73-191 9-115 (152)
38 cd00213 S-100 S-100: S-100 dom 44.0 27 0.0006 25.8 3.0 64 165-232 9-77 (88)
39 cd05030 calgranulins Calgranul 44.0 25 0.00053 26.8 2.8 61 167-229 11-74 (88)
40 PF09279 EF-hand_like: Phospho 40.1 24 0.00053 26.0 2.2 29 166-195 2-31 (83)
41 cd00252 SPARC_EC SPARC_EC; ext 36.0 90 0.0019 25.5 5.1 57 165-232 49-106 (116)
42 cd05025 S-100A1 S-100A1: S-100 34.5 39 0.00085 25.4 2.6 64 163-228 8-74 (92)
43 PF09435 DUF2015: Fungal prote 33.6 23 0.00049 30.2 1.3 79 109-198 5-102 (128)
44 TIGR00287 cas1 CRISPR-associat 32.7 69 0.0015 29.8 4.4 77 80-173 173-250 (323)
45 TIGR03641 cas1_HMARI CRISPR-as 32.6 53 0.0012 30.9 3.7 71 81-168 169-239 (322)
46 TIGR03638 cas1_ECOLI CRISPR-as 31.8 87 0.0019 28.8 4.9 65 81-161 154-219 (269)
47 cd05027 S-100B S-100B: S-100B 28.9 56 0.0012 25.1 2.7 28 165-192 9-38 (88)
48 KOG4223 Reticulocalbin, calume 28.1 93 0.002 30.3 4.5 61 166-233 243-304 (325)
49 PF12437 GSIII_N: Glutamine sy 27.9 19 0.00042 31.8 -0.1 25 77-103 74-98 (164)
50 PF10384 Scm3: Centromere prot 27.1 35 0.00075 25.2 1.1 12 164-175 16-27 (58)
51 PLN02964 phosphatidylserine de 26.9 1E+02 0.0022 32.4 4.9 63 166-235 181-244 (644)
52 KOG0034 Ca2+/calmodulin-depend 26.4 1.8E+02 0.0038 25.9 5.7 134 81-235 39-176 (187)
53 KOG0044 Ca2+ sensor (EF-Hand s 26.3 89 0.0019 28.0 3.8 71 168-240 104-183 (193)
54 KOG0028 Ca2+-binding protein ( 26.1 28 0.00061 31.0 0.6 30 79-108 37-66 (172)
55 cd05030 calgranulins Calgranul 25.6 98 0.0021 23.5 3.5 32 161-192 48-79 (88)
56 cd05029 S-100A6 S-100A6: S-100 25.4 96 0.0021 23.8 3.4 32 159-191 27-58 (88)
57 PF11919 DUF3437: Domain of un 24.8 16 0.00034 28.9 -1.1 42 126-181 23-64 (90)
58 cd05023 S-100A11 S-100A11: S-1 24.8 89 0.0019 24.1 3.1 31 162-192 50-80 (89)
59 cd05031 S-100A10_like S-100A10 24.7 71 0.0015 24.1 2.6 72 164-237 8-83 (94)
60 TIGR03639 cas1_NMENI CRISPR-as 24.5 2.5E+02 0.0054 26.0 6.5 84 93-191 167-251 (278)
61 PF10660 MitoNEET_N: Iron-cont 22.5 33 0.00071 25.9 0.3 37 95-131 22-58 (64)
62 PF12860 PAS_7: PAS fold 22.5 1E+02 0.0022 23.3 3.1 55 154-208 10-68 (115)
63 cd05026 S-100Z S-100Z: S-100Z 22.0 1.1E+02 0.0024 23.4 3.2 30 164-193 53-82 (93)
No 1
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=100.00 E-value=2.5e-96 Score=632.31 Aligned_cols=174 Identities=59% Similarity=1.104 Sum_probs=172.4
Q ss_pred CCCCCCChhccccccccCCCCceeccchhhhHHHhhchhHHHHHHHHHHHHhccCCCCCCCCCCCCcceeeecccccccc
Q 043673 69 HMHHGLSVLQQHVAFFDQDDNGIIYPWETYSGLRQIGFNIIASLVLAFVINLGLTYPTLPGWFPSPLLPIYIHNIHRSKH 148 (252)
Q Consensus 69 ~~~~~~TvLQqHvaFFDrD~DGiI~P~DTy~GfR~LGf~~~~s~~aa~~I~~~lSy~T~~sw~PdP~f~Iyv~nIHk~kH 148 (252)
|+|+++|||||||+|||||+||||||||||+|||+||||+++|+++|++||++|||+|+|+|+|||+|||||+||||+||
T Consensus 1 h~~~~~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kH 80 (174)
T PF05042_consen 1 HDHNNMTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKH 80 (174)
T ss_pred CCcccccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeeccccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccccchhhhHHHhhhcCCCCCCCCHHHHHHHHHcccCcCCchhhHHHHHHHHHHHHhhhCCCCccchhhh
Q 043673 149 GSDSGTYDTEGRYTPVNLENMFSKYARTVPDKLTLGEVWNLTEGNRLAFDLFGWVAAKLEWILLYILARDEEGLLSKEAV 228 (252)
Q Consensus 149 GSDSg~YD~eGrFvP~kFE~iFsKya~~~~d~LT~~El~~m~~gnR~~~D~~GW~aa~~EW~~~y~L~~~~dG~l~KEdi 228 (252)
|||||+||+||||||+|||+||+|||+++||+||++||++|++||||++||+||+|+.+||.++|.|+||+||+|+||+|
T Consensus 81 GSDSg~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~i 160 (174)
T PF05042_consen 81 GSDSGAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILAKDKDGFLSKEDI 160 (174)
T ss_pred CCCccccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHcCcCCcEeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHh
Q 043673 229 RRCFDGSLFEYCAR 242 (252)
Q Consensus 229 RgvYDGSLF~~ia~ 242 (252)
|+|||||||++|||
T Consensus 161 R~vYDGSlF~~iak 174 (174)
T PF05042_consen 161 RGVYDGSLFYKIAK 174 (174)
T ss_pred hhhcchHHHHHhhC
Confidence 99999999999986
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=95.35 E-value=0.043 Score=45.10 Aligned_cols=102 Identities=21% Similarity=0.241 Sum_probs=78.8
Q ss_pred hhccccccccCCCCceeccchhhhHHHhhchhHHHHHHHHHHHHhccCCCCCCCCCCCCcceeeeccccccccCCCCccc
Q 043673 76 VLQQHVAFFDQDDNGIIYPWETYSGLRQIGFNIIASLVLAFVINLGLTYPTLPGWFPSPLLPIYIHNIHRSKHGSDSGTY 155 (252)
Q Consensus 76 vLQqHvaFFDrD~DGiI~P~DTy~GfR~LGf~~~~s~~aa~~I~~~lSy~T~~sw~PdP~f~Iyv~nIHk~kHGSDSg~Y 155 (252)
.|++=...||.|+||.|.--|--.-+|.||.+
T Consensus 9 el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~------------------------------------------------ 40 (151)
T KOG0027|consen 9 ELKEAFQLFDKDGDGKISVEELGAVLRSLGQN------------------------------------------------ 40 (151)
T ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHHcCCC------------------------------------------------
Confidence 35555678999999999999999999999998
Q ss_pred cccccccchhhhHHHhhhcCCCCCCCCHHHHHHHHHcccCcCCchhhHHHHHHHHHHHHhh-hCCCCccchhhhcccc
Q 043673 156 DTEGRYTPVNLENMFSKYARTVPDKLTLGEVWNLTEGNRLAFDLFGWVAAKLEWILLYILA-RDEEGLLSKEAVRRCF 232 (252)
Q Consensus 156 D~eGrFvP~kFE~iFsKya~~~~d~LT~~El~~m~~gnR~~~D~~GW~aa~~EW~~~y~L~-~~~dG~l~KEdiRgvY 232 (252)
.......++++..+....+.+.+.|+..|+.......+..- ...-|-.-+|.+. .+.+|+++.++++.+.
T Consensus 41 -----~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~--~~~~el~eaF~~fD~d~~G~Is~~el~~~l 111 (151)
T KOG0027|consen 41 -----PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE--ASSEELKEAFRVFDKDGDGFISASELKKVL 111 (151)
T ss_pred -----CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc--ccHHHHHHHHHHHccCCCCcCcHHHHHHHH
Confidence 56677889999998888889999999998886554433221 3344666666666 3557999999998764
No 3
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=94.46 E-value=0.021 Score=40.03 Aligned_cols=60 Identities=18% Similarity=0.371 Sum_probs=48.0
Q ss_pred ccccCCCCceeccchhhhHHHhhchhHHHHHHHHHHHHhccCCCCCCCCCCCCcceeeeccccccccCCCCccccccccc
Q 043673 82 AFFDQDDNGIIYPWETYSGLRQIGFNIIASLVLAFVINLGLTYPTLPGWFPSPLLPIYIHNIHRSKHGSDSGTYDTEGRY 161 (252)
Q Consensus 82 aFFDrD~DGiI~P~DTy~GfR~LGf~~~~s~~aa~~I~~~lSy~T~~sw~PdP~f~Iyv~nIHk~kHGSDSg~YD~eGrF 161 (252)
.-||.|+||.|...|--..++.+|.... -..
T Consensus 7 ~~~D~d~~G~i~~~el~~~~~~~~~~~~-------------------------------------------------~~~ 37 (66)
T PF13499_consen 7 KKFDKDGDGYISKEELRRALKHLGRDMS-------------------------------------------------DEE 37 (66)
T ss_dssp HHHSTTSSSEEEHHHHHHHHHHTTSHST-------------------------------------------------HHH
T ss_pred HHHcCCccCCCCHHHHHHHHHHhccccc-------------------------------------------------HHH
Confidence 3589999999999998888888776554 223
Q ss_pred cchhhhHHHhhhcCCCCCCCCHHHHHHHH
Q 043673 162 TPVNLENMFSKYARTVPDKLTLGEVWNLT 190 (252)
Q Consensus 162 vP~kFE~iFsKya~~~~d~LT~~El~~m~ 190 (252)
+.+..+.||..++.+..+.+++.|..+++
T Consensus 38 ~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 38 SDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 44567778999999999999999998764
No 4
>PTZ00183 centrin; Provisional
Probab=94.45 E-value=0.086 Score=41.82 Aligned_cols=136 Identities=16% Similarity=0.256 Sum_probs=81.3
Q ss_pred hhccccccccCCCCceeccchhhhHHHhhchhHHHHHHHHHHHHhccCCCCCCCCCC-CCcceeeeccccccccCCCCcc
Q 043673 76 VLQQHVAFFDQDDNGIIYPWETYSGLRQIGFNIIASLVLAFVINLGLTYPTLPGWFP-SPLLPIYIHNIHRSKHGSDSGT 154 (252)
Q Consensus 76 vLQqHvaFFDrD~DGiI~P~DTy~GfR~LGf~~~~s~~aa~~I~~~lSy~T~~sw~P-dP~f~Iyv~nIHk~kHGSDSg~ 154 (252)
.|++=...||+|++|.|...|=...++.+|+++--..+..++-.+-- ...+-+. .-|.. -++...+..+
T Consensus 18 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~---~~~g~i~~~eF~~----~~~~~~~~~~--- 87 (158)
T PTZ00183 18 EIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDK---DGSGKIDFEEFLD----IMTKKLGERD--- 87 (158)
T ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCC---CCCCcEeHHHHHH----HHHHHhcCCC---
Confidence 45666677999999999999999999999987554444433332211 1111111 11111 1111111111
Q ss_pred ccccccccchhhhHHHhhhcCCCCCCCCHHHHHHHHHcccCcCCchhhHHHHHHHHHHHHhhhCCCCccchhhhcccccc
Q 043673 155 YDTEGRYTPVNLENMFSKYARTVPDKLTLGEVWNLTEGNRLAFDLFGWVAAKLEWILLYILARDEEGLLSKEAVRRCFDG 234 (252)
Q Consensus 155 YD~eGrFvP~kFE~iFsKya~~~~d~LT~~El~~m~~gnR~~~D~~GW~aa~~EW~~~y~L~~~~dG~l~KEdiRgvYDG 234 (252)
-.+..+.+|..++....+.|+..|+...+.......+ ...++... -.+-.+++|.|+.+++..+..+
T Consensus 88 -------~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~-----~~~~~~~~-~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 88 -------PREEILKAFRLFDDDKTGKISLKNLKRVAKELGETIT-----DEELQEMI-DEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred -------cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCC-----HHHHHHHH-HHhCCCCCCcCcHHHHHHHHhc
Confidence 1245789999999998899999999988874322111 12222221 2344578999999998776654
No 5
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=93.24 E-value=0.11 Score=33.55 Aligned_cols=29 Identities=31% Similarity=0.568 Sum_probs=23.6
Q ss_pred hccccccccCCCCceeccchhhhHHHhhc
Q 043673 77 LQQHVAFFDQDDNGIIYPWETYSGLRQIG 105 (252)
Q Consensus 77 LQqHvaFFDrD~DGiI~P~DTy~GfR~LG 105 (252)
++.....+|+|++|.|.+.|-..-++.+|
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~ 30 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG 30 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC
Confidence 45667788999999999999887777766
No 6
>PTZ00184 calmodulin; Provisional
Probab=92.93 E-value=0.29 Score=38.10 Aligned_cols=131 Identities=17% Similarity=0.224 Sum_probs=69.8
Q ss_pred hhccccccccCCCCceeccchhhhHHHhhchhHHHHHHHHHHHHhccCCCCCCCCCCCCcceeeecccccc-ccCCCCcc
Q 043673 76 VLQQHVAFFDQDDNGIIYPWETYSGLRQIGFNIIASLVLAFVINLGLTYPTLPGWFPSPLLPIYIHNIHRS-KHGSDSGT 154 (252)
Q Consensus 76 vLQqHvaFFDrD~DGiI~P~DTy~GfR~LGf~~~~s~~aa~~I~~~lSy~T~~sw~PdP~f~Iyv~nIHk~-kHGSDSg~ 154 (252)
.+++....+|.|++|.|...|-...+..+|.++--..+..++-.+. ....+-+.- .=++.-++.. .+.
T Consensus 12 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d---~~~~g~i~~---~ef~~~l~~~~~~~----- 80 (149)
T PTZ00184 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVD---ADGNGTIDF---PEFLTLMARKMKDT----- 80 (149)
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcC---cCCCCcCcH---HHHHHHHHHhccCC-----
Confidence 4667778899999999999988888777776543222222221111 111221111 1111111110 000
Q ss_pred ccccccccchhhhHHHhhhcCCCCCCCCHHHHHHHHHcccCcCCchhhHHHHHHHHHH-HHhhhCCCCccchhhhcc
Q 043673 155 YDTEGRYTPVNLENMFSKYARTVPDKLTLGEVWNLTEGNRLAFDLFGWVAAKLEWILL-YILARDEEGLLSKEAVRR 230 (252)
Q Consensus 155 YD~eGrFvP~kFE~iFsKya~~~~d~LT~~El~~m~~gnR~~~D~~GW~aa~~EW~~~-y~L~~~~dG~l~KEdiRg 230 (252)
+ ...+.+.+|..|+..+.+.||..|+..+++.. |.....-+...+ -.+-.+.+|.++-++...
T Consensus 81 -~-----~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-------~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 144 (149)
T PTZ00184 81 -D-----SEEEIKEAFKVFDRDGNGFISAAELRHVMTNL-------GEKLTDEEVDEMIREADVDGDGQINYEEFVK 144 (149)
T ss_pred -c-----HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH-------CCCCCHHHHHHHHHhcCCCCCCcCcHHHHHH
Confidence 0 12456788888888877888988888877642 111112222222 233346677777666544
No 7
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=91.55 E-value=0.42 Score=33.39 Aligned_cols=64 Identities=11% Similarity=0.046 Sum_probs=42.6
Q ss_pred hhhHHHhhhcCCCCCCCCHHHHHHHHHcccCcCCchhhHHHHHHHHHHHHhh-hCCCCccchhhhccc
Q 043673 165 NLENMFSKYARTVPDKLTLGEVWNLTEGNRLAFDLFGWVAAKLEWILLYILA-RDEEGLLSKEAVRRC 231 (252)
Q Consensus 165 kFE~iFsKya~~~~d~LT~~El~~m~~gnR~~~D~~GW~aa~~EW~~~y~L~-~~~dG~l~KEdiRgv 231 (252)
|..++|.+|+..+.+.||..|+..+++........ .. ..-++..++..+ .+.||.|+-++...+
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~--~~-~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSD--EE-SDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTH--HH-HHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccH--HH-HHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 46789999999999999999999999976543331 00 011222222222 367899998887654
No 8
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=91.40 E-value=0.11 Score=32.41 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=20.4
Q ss_pred ccccCCCCceeccchhhhHHH-hhc
Q 043673 82 AFFDQDDNGIIYPWETYSGLR-QIG 105 (252)
Q Consensus 82 aFFDrD~DGiI~P~DTy~GfR-~LG 105 (252)
.-||+|+||.|.+-|--..++ +||
T Consensus 7 ~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 7 KMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 458999999999999999998 787
No 9
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=90.67 E-value=1.2 Score=28.56 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=41.2
Q ss_pred hhHHHhhhcCCCCCCCCHHHHHHHHHcccCcCCchhhHHHHHHHHHHHHhh-hCCCCccchhhhccc
Q 043673 166 LENMFSKYARTVPDKLTLGEVWNLTEGNRLAFDLFGWVAAKLEWILLYILA-RDEEGLLSKEAVRRC 231 (252)
Q Consensus 166 FE~iFsKya~~~~d~LT~~El~~m~~gnR~~~D~~GW~aa~~EW~~~y~L~-~~~dG~l~KEdiRgv 231 (252)
+..+|..|+.+..+.|+..|+..+++......+ .-++..++..+ .+.+|.|+-++...+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLS-------EEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCC-------HHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 567899999998899999999999986543222 22333344444 457888988876543
No 10
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=89.85 E-value=0.28 Score=42.69 Aligned_cols=131 Identities=18% Similarity=0.219 Sum_probs=83.9
Q ss_pred hhccccccccCCCCceeccchhhhHHHhhchhHHHHHHHHHHHHhccCCCCCCCCCCCCcceeeeccccccccCCCCccc
Q 043673 76 VLQQHVAFFDQDDNGIIYPWETYSGLRQIGFNIIASLVLAFVINLGLTYPTLPGWFPSPLLPIYIHNIHRSKHGSDSGTY 155 (252)
Q Consensus 76 vLQqHvaFFDrD~DGiI~P~DTy~GfR~LGf~~~~s~~aa~~I~~~lSy~T~~sw~PdP~f~Iyv~nIHk~kHGSDSg~Y 155 (252)
.|++=-.+||+|+||-|.=.|-=.=+|+||||+--+.+.=+ ++. ..+..+ .--|+..|.=+-+-
T Consensus 21 ~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l-~~~---~d~~~~---~idf~~Fl~~ms~~--------- 84 (160)
T COG5126 21 ELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKL-FEE---IDAGNE---TVDFPEFLTVMSVK--------- 84 (160)
T ss_pred HHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHH-HHh---ccCCCC---ccCHHHHHHHHHHH---------
Confidence 45666789999999999999988889999999987775433 222 111111 11122222211100
Q ss_pred cccccc-cchhhhHHHhhhcCCCCCCCCHHHHHHHHHcccCcCCchhhHHHHHHHHHHHHhh-hCCCCccchhhhccc
Q 043673 156 DTEGRY-TPVNLENMFSKYARTVPDKLTLGEVWNLTEGNRLAFDLFGWVAAKLEWILLYILA-RDEEGLLSKEAVRRC 231 (252)
Q Consensus 156 D~eGrF-vP~kFE~iFsKya~~~~d~LT~~El~~m~~gnR~~~D~~GW~aa~~EW~~~y~L~-~~~dG~l~KEdiRgv 231 (252)
..|. ..+++.+.|.-|++++.+.++..||.++++.-.+-.+ --|-..+...+ .|.||.+.-++....
T Consensus 85 --~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~-------deev~~ll~~~d~d~dG~i~~~eF~~~ 153 (160)
T COG5126 85 --LKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLS-------DEEVEKLLKEYDEDGDGEIDYEEFKKL 153 (160)
T ss_pred --hccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCC-------HHHHHHHHHhcCCCCCceEeHHHHHHH
Confidence 0122 2678999999999999999999999999994333332 22333333333 357999988877653
No 11
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=89.22 E-value=0.28 Score=30.44 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=23.8
Q ss_pred hhhHHHhhhcCCCCCCCCHHHHHHHHH
Q 043673 165 NLENMFSKYARTVPDKLTLGEVWNLTE 191 (252)
Q Consensus 165 kFE~iFsKya~~~~d~LT~~El~~m~~ 191 (252)
++.++|..|++++.+.+|..|+..+++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 478999999999999999999999887
No 12
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=88.79 E-value=0.33 Score=30.63 Aligned_cols=26 Identities=15% Similarity=0.369 Sum_probs=24.1
Q ss_pred hhHHHhhhcCCCCCCCCHHHHHHHHH
Q 043673 166 LENMFSKYARTVPDKLTLGEVWNLTE 191 (252)
Q Consensus 166 FE~iFsKya~~~~d~LT~~El~~m~~ 191 (252)
.+++|++|++++.+.+++.|+.++++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 57899999999999999999999886
No 13
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=86.27 E-value=0.41 Score=30.19 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=20.0
Q ss_pred ccccccccCCCCceeccchhhhHHHhh
Q 043673 78 QQHVAFFDQDDNGIIYPWETYSGLRQI 104 (252)
Q Consensus 78 QqHvaFFDrD~DGiI~P~DTy~GfR~L 104 (252)
++=..-||+|+||.|..-|=-..++.|
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 333456999999999988876666554
No 14
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=84.60 E-value=1.4 Score=24.11 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=23.3
Q ss_pred hhHHHhhhcCCCCCCCCHHHHHHHHHc
Q 043673 166 LENMFSKYARTVPDKLTLGEVWNLTEG 192 (252)
Q Consensus 166 FE~iFsKya~~~~d~LT~~El~~m~~g 192 (252)
+..+|+.++....+.++..|+..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 578999999888889999999988764
No 15
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=84.54 E-value=1.4 Score=33.59 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=22.6
Q ss_pred ChhccccccccCCCCceeccchhhhHHH
Q 043673 75 SVLQQHVAFFDQDDNGIIYPWETYSGLR 102 (252)
Q Consensus 75 TvLQqHvaFFDrD~DGiI~P~DTy~GfR 102 (252)
..|++...-||+|+||.|...|-...+|
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~ 37 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILL 37 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHH
Confidence 3567777789999999999888777666
No 16
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=84.22 E-value=0.71 Score=31.91 Aligned_cols=28 Identities=32% Similarity=0.429 Sum_probs=22.8
Q ss_pred hhHHHhhhc--CCCCCCCCHHHHHHHHHcc
Q 043673 166 LENMFSKYA--RTVPDKLTLGEVWNLTEGN 193 (252)
Q Consensus 166 FE~iFsKya--~~~~d~LT~~El~~m~~gn 193 (252)
.=++|.||| .+.++.|+..|+.+|++.+
T Consensus 8 iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~E 37 (44)
T PF01023_consen 8 IIDVFHKYAGKEGDKDTLSKKELKELLEKE 37 (44)
T ss_dssp HHHHHHHHHTSSSSTTSEEHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCeEcHHHHHHHHHHH
Confidence 346899999 3457899999999999864
No 17
>PTZ00184 calmodulin; Provisional
Probab=79.53 E-value=2.2 Score=33.12 Aligned_cols=26 Identities=8% Similarity=0.160 Sum_probs=18.8
Q ss_pred hhhHHHhhhcCCCCCCCCHHHHHHHH
Q 043673 165 NLENMFSKYARTVPDKLTLGEVWNLT 190 (252)
Q Consensus 165 kFE~iFsKya~~~~d~LT~~El~~m~ 190 (252)
..+.||.+.+.+..+.+++.|...++
T Consensus 121 ~~~~~~~~~d~~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 121 EVDEMIREADVDGDGQINYEEFVKMM 146 (149)
T ss_pred HHHHHHHhcCCCCCCcCcHHHHHHHH
Confidence 46677777777667788888877654
No 18
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=78.02 E-value=5.2 Score=30.49 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=40.4
Q ss_pred hhhhHHHhhhcCCCCCCCCHHHHHHHHHcccCcCCchhhHHHHHHHHHHHHhh-hCCCCccchhhhc
Q 043673 164 VNLENMFSKYARTVPDKLTLGEVWNLTEGNRLAFDLFGWVAAKLEWILLYILA-RDEEGLLSKEAVR 229 (252)
Q Consensus 164 ~kFE~iFsKya~~~~d~LT~~El~~m~~gnR~~~D~~GW~aa~~EW~~~y~L~-~~~dG~l~KEdiR 229 (252)
.++.++|..+++.+.+.|+..|+.++++.. |.....++ -.+.+. .+.+|.|..++.-
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-------~~~~~ev~--~i~~~~d~~~~g~I~~~eF~ 67 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKS-------GLPQTLLA--KIWNLADIDNDGELDKDEFA 67 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-------CCCHHHHH--HHHHHhcCCCCCCcCHHHHH
Confidence 468899999999989999999999999863 22223333 233333 3567999888764
No 19
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=73.77 E-value=6.8 Score=29.60 Aligned_cols=30 Identities=7% Similarity=0.134 Sum_probs=24.9
Q ss_pred chhhhHHHhhhcCCCCCCCCHHHHHHHHHc
Q 043673 163 PVNLENMFSKYARTVPDKLTLGEVWNLTEG 192 (252)
Q Consensus 163 P~kFE~iFsKya~~~~d~LT~~El~~m~~g 192 (252)
++..++||+.++....+.+++.|.+.++..
T Consensus 51 ~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 51 ADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 455788999988887788999999988874
No 20
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=72.08 E-value=3.5 Score=33.82 Aligned_cols=65 Identities=20% Similarity=0.293 Sum_probs=46.4
Q ss_pred hhccccccccCCCCceeccchhhhHHHhhchhHHHHHHHHHHHHhccCCCCCCCCCCCCcceeeeccccccccCCCCccc
Q 043673 76 VLQQHVAFFDQDDNGIIYPWETYSGLRQIGFNIIASLVLAFVINLGLTYPTLPGWFPSPLLPIYIHNIHRSKHGSDSGTY 155 (252)
Q Consensus 76 vLQqHvaFFDrD~DGiI~P~DTy~GfR~LGf~~~~s~~aa~~I~~~lSy~T~~sw~PdP~f~Iyv~nIHk~kHGSDSg~Y 155 (252)
.|.+=--.||.|+||.|.+.|--.=+..||...-
T Consensus 86 el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~---------------------------------------------- 119 (151)
T KOG0027|consen 86 ELKEAFRVFDKDGDGFISASELKKVLTSLGEKLT---------------------------------------------- 119 (151)
T ss_pred HHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCC----------------------------------------------
Confidence 5666667899999999999887666666665443
Q ss_pred cccccccchhhhHHHhhhcCCCCCCCCHHHHHHHHHcc
Q 043673 156 DTEGRYTPVNLENMFSKYARTVPDKLTLGEVWNLTEGN 193 (252)
Q Consensus 156 D~eGrFvP~kFE~iFsKya~~~~d~LT~~El~~m~~gn 193 (252)
.+.++.++........+.+++.|...|+.++
T Consensus 120 -------~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 120 -------DEECKEMIREVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred -------HHHHHHHHHhcCCCCCCeEeHHHHHHHHhcC
Confidence 5566677766666556667777777777653
No 21
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=71.58 E-value=3.2 Score=25.19 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=21.4
Q ss_pred hHHHhhhcCCCCCCCCHHHHHHHH
Q 043673 167 ENMFSKYARTVPDKLTLGEVWNLT 190 (252)
Q Consensus 167 E~iFsKya~~~~d~LT~~El~~m~ 190 (252)
+++|++.+.++.+.+|..|+.+++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 678999999999999999998864
No 22
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=70.37 E-value=4.5 Score=32.23 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.4
Q ss_pred hHHHhhhcCCCCCCCCHHHHHHHHHc
Q 043673 167 ENMFSKYARTVPDKLTLGEVWNLTEG 192 (252)
Q Consensus 167 E~iFsKya~~~~d~LT~~El~~m~~g 192 (252)
=++|.||| +.++.|+-.|+.+|++.
T Consensus 11 I~~FhkYa-G~~~tLsk~Elk~Ll~~ 35 (91)
T cd05024 11 MLTFHKFA-GEKNYLNRDDLQKLMEK 35 (91)
T ss_pred HHHHHHHc-CCCCcCCHHHHHHHHHH
Confidence 36899999 45789999999999974
No 23
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=69.64 E-value=14 Score=25.07 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=36.6
Q ss_pred hhHHHhhhcCCCCCCCCHHHHHHHHHcccCcCCchhhHHHHHHHHHHHHhh-hCCCCccchhhh
Q 043673 166 LENMFSKYARTVPDKLTLGEVWNLTEGNRLAFDLFGWVAAKLEWILLYILA-RDEEGLLSKEAV 228 (252)
Q Consensus 166 FE~iFsKya~~~~d~LT~~El~~m~~gnR~~~D~~GW~aa~~EW~~~y~L~-~~~dG~l~KEdi 228 (252)
|.++|..++..+.+.+|..|+..+++... . ..-++.-.+..+ .+.+|.+.-++.
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g-------~--~~~~~~~i~~~~d~~~~g~i~~~ef 55 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSG-------L--PRSVLAQIWDLADTDKDGKLDKEEF 55 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcC-------C--CHHHHHHHHHHhcCCCCCcCCHHHH
Confidence 46789999988888999999999887532 1 223344444444 356788877665
No 24
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=67.45 E-value=10 Score=28.81 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=19.7
Q ss_pred hccccccccC-CC-CceeccchhhhHHHh
Q 043673 77 LQQHVAFFDQ-DD-NGIIYPWETYSGLRQ 103 (252)
Q Consensus 77 LQqHvaFFDr-D~-DGiI~P~DTy~GfR~ 103 (252)
|++--.-||. |+ ||.|...|--.-+++
T Consensus 10 l~~~F~~~D~~dg~dG~Is~~El~~~l~~ 38 (94)
T cd05031 10 LILTFHRYAGKDGDKNTLSRKELKKLMEK 38 (94)
T ss_pred HHHHHHHHhccCCCCCeECHHHHHHHHHH
Confidence 4444456887 97 699999988776665
No 25
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=66.15 E-value=6 Score=26.66 Aligned_cols=32 Identities=6% Similarity=0.276 Sum_probs=28.0
Q ss_pred ccchhhhHHHhhhcCCCCCCCCHHHHHHHHHc
Q 043673 161 YTPVNLENMFSKYARTVPDKLTLGEVWNLTEG 192 (252)
Q Consensus 161 FvP~kFE~iFsKya~~~~d~LT~~El~~m~~g 192 (252)
+.++.++.||+.++..+.+.+++.|...+++.
T Consensus 22 ~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 22 LSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 67788999999999999999999999988763
No 26
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=63.18 E-value=3.7 Score=28.06 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=20.7
Q ss_pred ccccCCCCceeccchhhhHHHhhch
Q 043673 82 AFFDQDDNGIIYPWETYSGLRQIGF 106 (252)
Q Consensus 82 aFFDrD~DGiI~P~DTy~GfR~LGf 106 (252)
.-||.|+||.|...|--.-++++|+
T Consensus 6 ~~~D~~~~G~i~~~el~~~l~~~g~ 30 (67)
T cd00052 6 RSLDPDGDGLISGDEARPFLGKSGL 30 (67)
T ss_pred HHhCCCCCCcCcHHHHHHHHHHcCC
Confidence 4489999999999988877777664
No 27
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=60.55 E-value=11 Score=30.31 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=41.4
Q ss_pred hhhhHHHhhhcCCCCCCCCHHHHHHHHHcccCcCCchhhHHHHHHHHHHHHhh-hCCCCccchhhh
Q 043673 164 VNLENMFSKYARTVPDKLTLGEVWNLTEGNRLAFDLFGWVAAKLEWILLYILA-RDEEGLLSKEAV 228 (252)
Q Consensus 164 ~kFE~iFsKya~~~~d~LT~~El~~m~~gnR~~~D~~GW~aa~~EW~~~y~L~-~~~dG~l~KEdi 228 (252)
++|+.||..... ..+.||..++..++..-..+.+ .....|.|+ .+.||.|.+++.
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~---------~L~~IW~LaD~~~dG~L~~~EF 65 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRD---------VLAQIWNLADIDNDGKLDFEEF 65 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHH---------HHHHHHHHH-SSSSSEEEHHHH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHH---------HHHHHHhhhcCCCCCcCCHHHH
Confidence 679999998764 4688999999988886665443 445667777 357899998874
No 28
>PTZ00183 centrin; Provisional
Probab=59.67 E-value=25 Score=27.68 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=38.8
Q ss_pred hhhHHHhhhcCCCCCCCCHHHHHHHHHcccCcCCchhhHHHHHHHHHHHHhh-hCCCCccchhhhcccc
Q 043673 165 NLENMFSKYARTVPDKLTLGEVWNLTEGNRLAFDLFGWVAAKLEWILLYILA-RDEEGLLSKEAVRRCF 232 (252)
Q Consensus 165 kFE~iFsKya~~~~d~LT~~El~~m~~gnR~~~D~~GW~aa~~EW~~~y~L~-~~~dG~l~KEdiRgvY 232 (252)
..+.+|..++....+.+++.|+..++.......++ .-++..+|.++ .+.+|.|..++++.+.
T Consensus 54 ~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~------~~~l~~~F~~~D~~~~G~i~~~e~~~~l 116 (158)
T PTZ00183 54 EIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDP------REEILKAFRLFDDDKTGKISLKNLKRVA 116 (158)
T ss_pred HHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCc------HHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 46677777776666777777777766543222221 22455556665 4677999998887553
No 29
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=58.20 E-value=9.4 Score=29.71 Aligned_cols=57 Identities=23% Similarity=0.112 Sum_probs=39.3
Q ss_pred hhHHHhhhcC-CCCCCCCHHHHHHHHHcc--cCcCCchhhHHHHHHHHHHH-HhhhCCCCccchhhhc
Q 043673 166 LENMFSKYAR-TVPDKLTLGEVWNLTEGN--RLAFDLFGWVAAKLEWILLY-ILARDEEGLLSKEAVR 229 (252)
Q Consensus 166 FE~iFsKya~-~~~d~LT~~El~~m~~gn--R~~~D~~GW~aa~~EW~~~y-~L~~~~dG~l~KEdiR 229 (252)
.-++|.+|++ +.++.|+..|+..+++.+ ....+. -|..-+. .+=.|.||.|+=++.-
T Consensus 10 l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~-------~~v~~mi~~~D~d~DG~I~F~EF~ 70 (89)
T cd05022 10 LVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDV-------EGLEEKMKNLDVNQDSKLSFEEFW 70 (89)
T ss_pred HHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCH-------HHHHHHHHHhCCCCCCCCcHHHHH
Confidence 4578999999 888999999999999863 112222 2333333 2334789999887753
No 30
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=55.64 E-value=9.8 Score=29.28 Aligned_cols=57 Identities=19% Similarity=0.175 Sum_probs=33.2
Q ss_pred HHHhhhcC-CC-CCCCCHHHHHHHHHcccCcCCchhhHHHHHHHHHHH-HhhhCCCCccchhhh
Q 043673 168 NMFSKYAR-TV-PDKLTLGEVWNLTEGNRLAFDLFGWVAAKLEWILLY-ILARDEEGLLSKEAV 228 (252)
Q Consensus 168 ~iFsKya~-~~-~d~LT~~El~~m~~gnR~~~D~~GW~aa~~EW~~~y-~L~~~~dG~l~KEdi 228 (252)
+||.||+. .. .+.|+..|+.++++......+.+ ... |....+ .+-.+.+|.+.=++.
T Consensus 14 ~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~--t~~--ev~~m~~~~D~d~dG~Idf~EF 73 (88)
T cd05029 14 AIFHKYSGREGDKNTLSKKELKELIQKELTIGSKL--QDA--EIAKLMEDLDRNKDQEVNFQEY 73 (88)
T ss_pred HHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCC--CHH--HHHHHHHHhcCCCCCCCcHHHH
Confidence 68999997 33 56999999999996322111111 112 222223 233467788876654
No 31
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=53.26 E-value=24 Score=27.19 Aligned_cols=57 Identities=18% Similarity=0.088 Sum_probs=36.2
Q ss_pred hhhHHHhhhcCCCC--CCCCHHHHHHHHHccc-----CcCCchhhHHHHHHHHHHHHh-hhCCCCccchhhh
Q 043673 165 NLENMFSKYARTVP--DKLTLGEVWNLTEGNR-----LAFDLFGWVAAKLEWILLYIL-ARDEEGLLSKEAV 228 (252)
Q Consensus 165 kFE~iFsKya~~~~--d~LT~~El~~m~~gnR-----~~~D~~GW~aa~~EW~~~y~L-~~~~dG~l~KEdi 228 (252)
+.-.+|.+|+.... +.||..|+..++..+- ...++- ||.-++.- =.|.||.+.=++.
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~-------~~~~ll~~~D~d~DG~I~f~EF 74 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPG-------VLDRMMKKLDLNSDGQLDFQEF 74 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHH-------HHHHHHHHcCCCCCCcCcHHHH
Confidence 45678999885433 3799999999999862 233332 33333322 3467788876554
No 32
>PF15192 TMEM213: TMEM213 family
Probab=52.88 E-value=7.3 Score=30.66 Aligned_cols=28 Identities=36% Similarity=0.699 Sum_probs=19.2
Q ss_pred cCCchhhHHHHHHHHHH----HHhhhCCCCcc
Q 043673 196 AFDLFGWVAAKLEWILL----YILARDEEGLL 223 (252)
Q Consensus 196 ~~D~~GW~aa~~EW~~~----y~L~~~~dG~l 223 (252)
-.|=.||+|+.+.|.+. .+|+-|+=-+|
T Consensus 41 gvDeyGWIAAAVGWSLwFLTLILLCvdKlmKL 72 (82)
T PF15192_consen 41 GVDEYGWIAAAVGWSLWFLTLILLCVDKLMKL 72 (82)
T ss_pred CCchhhHHHHHHhHHHHHHHHHHHHHHHHhcc
Confidence 56889999999999853 34554543333
No 33
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=52.80 E-value=21 Score=31.92 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=28.1
Q ss_pred cchhhhHHHhhhcCCCCCCCCHHHHHHHHHcccC
Q 043673 162 TPVNLENMFSKYARTVPDKLTLGEVWNLTEGNRL 195 (252)
Q Consensus 162 vP~kFE~iFsKya~~~~d~LT~~El~~m~~gnR~ 195 (252)
..+.-+.||+|-++.+.+.||+.|..+-.++...
T Consensus 145 ~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~ 178 (193)
T KOG0044|consen 145 PEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPS 178 (193)
T ss_pred HHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHH
Confidence 4455688999999999999999999988776654
No 34
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=51.57 E-value=14 Score=34.29 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=27.5
Q ss_pred hhhhHHHhhhcCCCCCCCCHHHHHHHHHcccC
Q 043673 164 VNLENMFSKYARTVPDKLTLGEVWNLTEGNRL 195 (252)
Q Consensus 164 ~kFE~iFsKya~~~~d~LT~~El~~m~~gnR~ 195 (252)
+.++.+|.+|+.+..+.+.+.||..|+..-..
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLga 130 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGA 130 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCC
Confidence 45788999999999999999999999985433
No 35
>PF05901 Excalibur: Excalibur calcium-binding domain; InterPro: IPR008613 Extracellular Ca2+-dependent nuclease YokF from Bacillus subtilis and several other surface-exposed proteins from diverse bacteria are encoded in the genomes in two paralogous forms that differ by a ~45 amino acid fragment, which comprises a novel conserved domain. Sequence analysis of this domain revealed a conserved DxDxDGxxCE motif, which is strikingly similar to the Ca2+-binding loop of the calmodulin-like EF-hand domains, suggesting an evolutionary relationship between them. Functions of many of the other proteins in which the novel domain, named Excalibur (extracellular calcium-binding region), is found, as well as a structural model of its conserved motif are consistent with the notion that the Excalibur domain binds calcium. This domain is but one more example of the diversity of structural contexts surrounding the EF-hand-like calcium-binding loop in bacteria. This loop is thus more widespread than hitherto recognised and the evolution of EF-hand-like domains is probably more complex than previously appreciated [].
Probab=50.85 E-value=6.8 Score=26.08 Aligned_cols=9 Identities=44% Similarity=0.833 Sum_probs=7.9
Q ss_pred cccCCCCce
Q 043673 83 FFDQDDNGI 91 (252)
Q Consensus 83 FFDrD~DGi 91 (252)
..|||+|||
T Consensus 26 ~LDrD~DGi 34 (37)
T PF05901_consen 26 KLDRDGDGI 34 (37)
T ss_pred cccCCCCCC
Confidence 569999998
No 36
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=49.64 E-value=17 Score=27.97 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=38.0
Q ss_pred hhHHHhhhc-CCCCC-CCCHHHHHHHHHcccCcCCchhhHHHHHHHHHHHHhh-hCCCCccchhhhccc
Q 043673 166 LENMFSKYA-RTVPD-KLTLGEVWNLTEGNRLAFDLFGWVAAKLEWILLYILA-RDEEGLLSKEAVRRC 231 (252)
Q Consensus 166 FE~iFsKya-~~~~d-~LT~~El~~m~~gnR~~~D~~GW~aa~~EW~~~y~L~-~~~dG~l~KEdiRgv 231 (252)
+-++|.+|+ +...+ .||..||.++++.+-. +.++.-...-+|.-+..-+ .+.||.++=++.-.+
T Consensus 12 ~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~--~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l 78 (93)
T cd05026 12 LIRIFHNYSGKEGDRYKLSKGELKELLQRELT--DFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVL 78 (93)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHhH--HhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence 456799999 44444 4999999999976320 0111111223555444444 356788887776443
No 37
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=44.64 E-value=7.3 Score=34.00 Aligned_cols=103 Identities=18% Similarity=0.264 Sum_probs=66.8
Q ss_pred CCChhccccccccCCCCceeccchhhhHHHhhchhHHHHHHHHHHHHhccCCCCCC---CCC-CCCcceeeecccccccc
Q 043673 73 GLSVLQQHVAFFDQDDNGIIYPWETYSGLRQIGFNIIASLVLAFVINLGLTYPTLP---GWF-PSPLLPIYIHNIHRSKH 148 (252)
Q Consensus 73 ~~TvLQqHvaFFDrD~DGiI~P~DTy~GfR~LGf~~~~s~~aa~~I~~~lSy~T~~---sw~-PdP~f~Iyv~nIHk~kH 148 (252)
.+..++.=...||+.+||-|.-...=.=+|+||-|+-=|-+.=.+=+ |.-.. --+ ..-++|||= |.+||
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~----~~~~~~~~~rl~FE~fLpm~q---~vakn 81 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQ----PKRREMNVKRLDFEEFLPMYQ---QVAKN 81 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcC----cccchhhhhhhhHHHHHHHHH---HHHhc
Confidence 34566666778999999999998888889999999976654432211 21110 001 234677763 35556
Q ss_pred CCCCccccccccccchhhhHHHhhhcCCCCCCCCHHHHHHHHH
Q 043673 149 GSDSGTYDTEGRYTPVNLENMFSKYARTVPDKLTLGEVWNLTE 191 (252)
Q Consensus 149 GSDSg~YD~eGrFvP~kFE~iFsKya~~~~d~LT~~El~~m~~ 191 (252)
-+-++|+. |=+-..-+++...+.+...||..+|.
T Consensus 82 -k~q~t~ed--------fvegLrvFDkeg~G~i~~aeLRhvLt 115 (152)
T KOG0030|consen 82 -KDQGTYED--------FVEGLRVFDKEGNGTIMGAELRHVLT 115 (152)
T ss_pred -cccCcHHH--------HHHHHHhhcccCCcceeHHHHHHHHH
Confidence 67777754 66666666666666777777776665
No 38
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=43.99 E-value=27 Score=25.76 Aligned_cols=64 Identities=14% Similarity=0.086 Sum_probs=39.5
Q ss_pred hhhHHHhhhcC--CCCCCCCHHHHHHHHHcccCcCCch--hhHHHHHHHHHHHHhh-hCCCCccchhhhcccc
Q 043673 165 NLENMFSKYAR--TVPDKLTLGEVWNLTEGNRLAFDLF--GWVAAKLEWILLYILA-RDEEGLLSKEAVRRCF 232 (252)
Q Consensus 165 kFE~iFsKya~--~~~d~LT~~El~~m~~gnR~~~D~~--GW~aa~~EW~~~y~L~-~~~dG~l~KEdiRgvY 232 (252)
.+.++|..|++ ...+.||..|+..+++.+.- .++ +.. .-|+.-++..+ .+.+|.|.-++...++
T Consensus 9 ~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g--~~~~~~~~--~~ei~~i~~~~d~~~~g~I~f~eF~~~~ 77 (88)
T cd00213 9 TIIDVFHKYSGKEGDKDTLSKKELKELLETELP--NFLKNQKD--PEAVDKIMKDLDVNKDGKVDFQEFLVLI 77 (88)
T ss_pred HHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhh--hhccCCCC--HHHHHHHHHHhccCCCCcCcHHHHHHHH
Confidence 46677999999 78889999999999874210 011 111 22333333322 3567888887775443
No 39
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=43.96 E-value=25 Score=26.75 Aligned_cols=61 Identities=21% Similarity=0.198 Sum_probs=37.8
Q ss_pred hHHHhhhcCC--CCCCCCHHHHHHHHHcccCcCCchhhHHHHHHHHHHHHhh-hCCCCccchhhhc
Q 043673 167 ENMFSKYART--VPDKLTLGEVWNLTEGNRLAFDLFGWVAAKLEWILLYILA-RDEEGLLSKEAVR 229 (252)
Q Consensus 167 E~iFsKya~~--~~d~LT~~El~~m~~gnR~~~D~~GW~aa~~EW~~~y~L~-~~~dG~l~KEdiR 229 (252)
-.+|.|||.. .++.||..|+..++..+- .++.-=....-+|.-++... .+.+|.++-++.-
T Consensus 11 ~~~f~~y~~~~~~~~~Is~~El~~ll~~~~--g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~ 74 (88)
T cd05030 11 INVFHQYSVRKGHPDTLYKKEFKQLVEKEL--PNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFL 74 (88)
T ss_pred HHHHHHHhccCCCcccCCHHHHHHHHHHHh--hHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHH
Confidence 3579999965 367999999999997421 11100001145566555555 2467899877754
No 40
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=40.07 E-value=24 Score=25.97 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=23.9
Q ss_pred hhHHHhhhcCCCCCCCCHHHHHHHHH-cccC
Q 043673 166 LENMFSKYARTVPDKLTLGEVWNLTE-GNRL 195 (252)
Q Consensus 166 FE~iFsKya~~~~d~LT~~El~~m~~-gnR~ 195 (252)
.++||.+|+. ....||..++.+-|+ -|++
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~ 31 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGE 31 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhcc
Confidence 4789999988 578999999999986 5665
No 41
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=36.03 E-value=90 Score=25.50 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=37.6
Q ss_pred hhhHHHhhhcCCCCCCCCHHHHHHHHHcccCcCCchhhHHHHH-HHHHHHHhhhCCCCccchhhhcccc
Q 043673 165 NLENMFSKYARTVPDKLTLGEVWNLTEGNRLAFDLFGWVAAKL-EWILLYILARDEEGLLSKEAVRRCF 232 (252)
Q Consensus 165 kFE~iFsKya~~~~d~LT~~El~~m~~gnR~~~D~~GW~aa~~-EW~~~y~L~~~~dG~l~KEdiRgvY 232 (252)
+..-+|..++..+.+.||..||..+. .++. ...+ .|.... =.++||.++.++.+.|+
T Consensus 49 ~l~w~F~~lD~d~DG~Ls~~EL~~~~------l~~~---e~~~~~f~~~~--D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 49 PVGWMFNQLDGNYDGKLSHHELAPIR------LDPN---EHCIKPFFESC--DLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHCCCCCCcCCHHHHHHHH------ccch---HHHHHHHHHHH--CCCCCCCCCHHHHHHHH
Confidence 35567999999988899999999875 1221 1111 111111 13689999999988775
No 42
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=34.50 E-value=39 Score=25.41 Aligned_cols=64 Identities=14% Similarity=0.064 Sum_probs=41.7
Q ss_pred chhhhHHHhhhc-CCCCC-CCCHHHHHHHHHcccCcCCchhhHHHHHHHHHHHHhh-hCCCCccchhhh
Q 043673 163 PVNLENMFSKYA-RTVPD-KLTLGEVWNLTEGNRLAFDLFGWVAAKLEWILLYILA-RDEEGLLSKEAV 228 (252)
Q Consensus 163 P~kFE~iFsKya-~~~~d-~LT~~El~~m~~gnR~~~D~~GW~aa~~EW~~~y~L~-~~~dG~l~KEdi 228 (252)
.+...++|..|+ +...+ .|+..|+..+++.+- .+++|.-...-+|.-++..+ .+.+|.+.-++.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~l--g~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF 74 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTEL--SDFLDAQKDADAVDKIMKELDENGDGEVDFQEF 74 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHH--HHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHH
Confidence 456788999997 88777 499999999996422 12233322344565555444 345788876655
No 43
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=33.58 E-value=23 Score=30.19 Aligned_cols=79 Identities=19% Similarity=0.301 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCC---------Ccceeeeccccc-------cccCCCCccccccccccchhhhHHHhh
Q 043673 109 IASLVLAFVINLGLTYPTLPGWFPS---------PLLPIYIHNIHR-------SKHGSDSGTYDTEGRYTPVNLENMFSK 172 (252)
Q Consensus 109 ~~s~~aa~~I~~~lSy~T~~sw~Pd---------P~f~Iyv~nIHk-------~kHGSDSg~YD~eGrFvP~kFE~iFsK 172 (252)
+.++...++|=+.+.|-|+.-|+|- |+-+..-.++.- ...|.-|..||-+++..
T Consensus 5 ly~~~~~~~i~~t~lf~~R~r~~~~~~~~~~~~~~~~~~~y~~l~~~~sF~~D~eaGLsSs~FDl~~Ni~---------- 74 (128)
T PF09435_consen 5 LYSLTFFVLIIGTLLFFTRHRWLPLLPRYRSRLLRIRSYFYSRLPLNSSFEDDIEAGLSSSNFDLSSNIN---------- 74 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhccccccccccCCCCCCHHHHHHccccccccChhhccc----------
Confidence 3344444444444557777777763 111122222221 23566666666655432
Q ss_pred hcCCCCCCCC---HHHHHHHHHcccCcCC
Q 043673 173 YARTVPDKLT---LGEVWNLTEGNRLAFD 198 (252)
Q Consensus 173 ya~~~~d~LT---~~El~~m~~gnR~~~D 198 (252)
+.+...+|. ..||.+.++.+++-+|
T Consensus 75 -~~D~R~GLD~~ak~EI~~IM~~~~v~FD 102 (128)
T PF09435_consen 75 -SGDSRAGLDDAAKREIRRIMKRRRVNFD 102 (128)
T ss_pred -CCCcccCcCHHHHHHHHHHHHHcCCCHH
Confidence 233344566 6999999999999888
No 44
>TIGR00287 cas1 CRISPR-associated endonuclease Cas1. This model identifies CRISPR-associated protein Cas1, the most universal CRISPR system protein. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Cas1 is a metal-dependent DNA-specific endonuclease.
Probab=32.70 E-value=69 Score=29.83 Aligned_cols=77 Identities=23% Similarity=0.415 Sum_probs=62.0
Q ss_pred ccccccCCCCceeccchhhhHHHhhchhHHHHHHHHHHHHhccCCCCCCCCCCCCcceeeeccccccccCCCCccccccc
Q 043673 80 HVAFFDQDDNGIIYPWETYSGLRQIGFNIIASLVLAFVINLGLTYPTLPGWFPSPLLPIYIHNIHRSKHGSDSGTYDTEG 159 (252)
Q Consensus 80 HvaFFDrD~DGiI~P~DTy~GfR~LGf~~~~s~~aa~~I~~~lSy~T~~sw~PdP~f~Iyv~nIHk~kHGSDSg~YD~eG 159 (252)
...||-|..-+ |.|.++-+-..|+.+|.+.++..++..+| ||. |.-+|....|.-|=+||-.=
T Consensus 173 ~~~f~~R~~rp---~~DpvNa~LsygY~iL~~~v~~ai~~~GL----------dP~----iG~lH~~~~~~~sLa~DL~E 235 (323)
T TIGR00287 173 EFGFNGRSKRP---PKDPFNALLSYGYSLLYSNVLTAIYIAGL----------DPY----IGFLHTDRSGRPSLVLDLME 235 (323)
T ss_pred cCcCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHcCC----------Ccc----eeeeccCCCCCchHHHHHHH
Confidence 35788886553 89999999999999999999999999988 674 66689999999999999887
Q ss_pred cccchhhhH-HHhhh
Q 043673 160 RYTPVNLEN-MFSKY 173 (252)
Q Consensus 160 rFvP~kFE~-iFsKy 173 (252)
-|.|.--+. +|+--
T Consensus 236 ~fRp~iVD~~v~~l~ 250 (323)
T TIGR00287 236 EFRPQIVDRLVFSLI 250 (323)
T ss_pred HhhHHHHHHHHHHHH
Confidence 777755554 35543
No 45
>TIGR03641 cas1_HMARI CRISPR-associated endonuclease Cas1, HMARI/TNEAP subtype. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.
Probab=32.61 E-value=53 Score=30.93 Aligned_cols=71 Identities=18% Similarity=0.278 Sum_probs=57.4
Q ss_pred cccccCCCCceeccchhhhHHHhhchhHHHHHHHHHHHHhccCCCCCCCCCCCCcceeeeccccccccCCCCcccccccc
Q 043673 81 VAFFDQDDNGIIYPWETYSGLRQIGFNIIASLVLAFVINLGLTYPTLPGWFPSPLLPIYIHNIHRSKHGSDSGTYDTEGR 160 (252)
Q Consensus 81 vaFFDrD~DGiI~P~DTy~GfR~LGf~~~~s~~aa~~I~~~lSy~T~~sw~PdP~f~Iyv~nIHk~kHGSDSg~YD~eGr 160 (252)
..|--|+.- .|.|-++-+-..|+.++.+.+...++..+| ||. |.-+|..+.|.-|=+||--=-
T Consensus 169 ~~F~gR~rr---p~~DpvNa~LsygY~iL~~~i~~al~~~GL----------dP~----iG~lH~~~~gr~sLa~DL~E~ 231 (322)
T TIGR03641 169 FRFEKRTRR---PPKNELNALISFGNSLLYTTVLSEIYKTHL----------NPT----ISYLHEPSERRFSLALDIAEI 231 (322)
T ss_pred CcCCCCCCC---CcCCHHHHHHHHHHHHHHHHHHHHHHHcCC----------Ccc----eeeccCCCCCCccHHHHHHHH
Confidence 344456654 479999999999999999999999999988 674 677999999999999998777
Q ss_pred ccchhhhH
Q 043673 161 YTPVNLEN 168 (252)
Q Consensus 161 FvP~kFE~ 168 (252)
|.|.--+.
T Consensus 232 fRp~~vD~ 239 (322)
T TIGR03641 232 FKPIIVDR 239 (322)
T ss_pred hhHHHHHH
Confidence 77754444
No 46
>TIGR03638 cas1_ECOLI CRISPR-associated endonuclease Cas1, ECOLI subtype. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.
Probab=31.78 E-value=87 Score=28.79 Aligned_cols=65 Identities=18% Similarity=0.141 Sum_probs=48.0
Q ss_pred cccccCCCCc-eeccchhhhHHHhhchhHHHHHHHHHHHHhccCCCCCCCCCCCCcceeeeccccccccCCCCccccccc
Q 043673 81 VAFFDQDDNG-IIYPWETYSGLRQIGFNIIASLVLAFVINLGLTYPTLPGWFPSPLLPIYIHNIHRSKHGSDSGTYDTEG 159 (252)
Q Consensus 81 vaFFDrD~DG-iI~P~DTy~GfR~LGf~~~~s~~aa~~I~~~lSy~T~~sw~PdP~f~Iyv~nIHk~kHGSDSg~YD~eG 159 (252)
..||-|+... -..|.|-++-.-..|+.++.+.++..++..+| ||. +.-+|..+++ |=+||--=
T Consensus 154 ~~f~gR~~rp~~~~~~DpvNa~LsyGYtlL~~~i~~ai~~~GL----------dP~----lG~lH~~~~~--sLv~Dl~E 217 (269)
T TIGR03638 154 VPWKGRRYDPGDWEAGDPVNRALSAANACLYGICHAAILAAGY----------SPA----LGFIHTGKPL--SFVYDIAD 217 (269)
T ss_pred CCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCC----------CCc----ceeeeCCCCC--chhhhhHh
Confidence 5667665442 23579999999999999999999999999988 675 4457877763 56676533
Q ss_pred cc
Q 043673 160 RY 161 (252)
Q Consensus 160 rF 161 (252)
-|
T Consensus 218 ~f 219 (269)
T TIGR03638 218 LY 219 (269)
T ss_pred hh
Confidence 33
No 47
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=28.94 E-value=56 Score=25.08 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=23.0
Q ss_pred hhhHHHhhhc-CCCCC-CCCHHHHHHHHHc
Q 043673 165 NLENMFSKYA-RTVPD-KLTLGEVWNLTEG 192 (252)
Q Consensus 165 kFE~iFsKya-~~~~d-~LT~~El~~m~~g 192 (252)
.+-++|.+|+ +...+ .|+..|+..+++.
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~ 38 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINN 38 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHH
Confidence 4567899998 66666 4999999999986
No 48
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.06 E-value=93 Score=30.30 Aligned_cols=61 Identities=28% Similarity=0.219 Sum_probs=42.4
Q ss_pred hhHHHhhhcCCCCCCCCHHHHHHHHHcccCcCCchhhHHHHHHHH-HHHHhhhCCCCccchhhhccccc
Q 043673 166 LENMFSKYARTVPDKLTLGEVWNLTEGNRLAFDLFGWVAAKLEWI-LLYILARDEEGLLSKEAVRRCFD 233 (252)
Q Consensus 166 FE~iFsKya~~~~d~LT~~El~~m~~gnR~~~D~~GW~aa~~EW~-~~y~L~~~~dG~l~KEdiRgvYD 233 (252)
=|.+|+-|++...++|+..||..-+. |-+--.|..|-. ++|.-=.|+||+|+||+|-.=||
T Consensus 243 re~F~~~~DknkDG~L~~dEl~~WI~-------P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~~d 304 (325)
T KOG4223|consen 243 REQFFEFRDKNKDGKLDGDELLDWIL-------PSEQDHAKAEARHLLHEADEDKDGKLSKEEILEHYD 304 (325)
T ss_pred HHHHHHHhhcCCCCccCHHHHhcccC-------CCCccHHHHHHHHHhhhhccCccccccHHHHhhCcc
Confidence 35778888888888999999973332 334445666644 33333468999999999987665
No 49
>PF12437 GSIII_N: Glutamine synthetase type III N terminal ; InterPro: IPR022147 This domain family is found in bacteria and eukaryotes, and is approximately 160 amino acids in length. The family is found in association with PF00120 from PFAM. This family is the N-terminal region of glutamine synthetase type III which is one of the enzymes responsible for generation of glutamine through conversion glutamate to glutamine by the incorporation of ammonia (NH3). ; GO: 0004356 glutamate-ammonia ligase activity; PDB: 3O6X_D.
Probab=27.91 E-value=19 Score=31.81 Aligned_cols=25 Identities=32% Similarity=0.613 Sum_probs=13.7
Q ss_pred hccccccccCCCCceeccchhhhHHHh
Q 043673 77 LQQHVAFFDQDDNGIIYPWETYSGLRQ 103 (252)
Q Consensus 77 LQqHvaFFDrD~DGiI~P~DTy~GfR~ 103 (252)
=++|-+|++.|+|| .|.+.|.|=.-
T Consensus 74 AeKHdsF~~~~~~g--~~i~~FsGk~L 98 (164)
T PF12437_consen 74 AEKHDSFISPDGDG--KPIEEFSGKEL 98 (164)
T ss_dssp ---EEE-EEE-TTS--SEEE---GGG-
T ss_pred hhhhhheeeeCCCC--CEEEEEChHHh
Confidence 38999999999999 48888888543
No 50
>PF10384 Scm3: Centromere protein Scm3; InterPro: IPR018465 The centromere protein Scm3 is a non-histone component of centromeric chromatin that binds to CenH3-H4 histones, which are required for kinetochore assembly. Scm3 is required for Cse4 localisation and is required for its centromeric association [, ]. The histone H3 variant Cse4 replaces conventional histone H3 in centromeric chromatin and helps direct the assembly of the kinetochore. In addition, Scm3 has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for G2/M progression []. Scm3 is required to maintain kinetochore function throughout the cell cycle. Scm3 contains a nuclear export signal (NES). The N-terminal region of Scm3 is well conserved and functions as the CenH3-interacting domain, while the C-terminal region is variable in size and sometimes consists of DNA binding motifs [].; GO: 0005634 nucleus; PDB: 3R45_C 2YFV_C 2L5A_A.
Probab=27.07 E-value=35 Score=25.20 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=10.8
Q ss_pred hhhhHHHhhhcC
Q 043673 164 VNLENMFSKYAR 175 (252)
Q Consensus 164 ~kFE~iFsKya~ 175 (252)
..||.||+||.+
T Consensus 16 ~~~e~I~~KY~~ 27 (58)
T PF10384_consen 16 SRWESIIEKYGQ 27 (58)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHHhcC
Confidence 579999999998
No 51
>PLN02964 phosphatidylserine decarboxylase
Probab=26.89 E-value=1e+02 Score=32.42 Aligned_cols=63 Identities=11% Similarity=0.073 Sum_probs=43.4
Q ss_pred hhHHHhhhcCCCCCCCCHHHHHHHHHcccCcCCchhhHHHHHHHHHHHHhh-hCCCCccchhhhcccccch
Q 043673 166 LENMFSKYARTVPDKLTLGEVWNLTEGNRLAFDLFGWVAAKLEWILLYILA-RDEEGLLSKEAVRRCFDGS 235 (252)
Q Consensus 166 FE~iFsKya~~~~d~LT~~El~~m~~gnR~~~D~~GW~aa~~EW~~~y~L~-~~~dG~l~KEdiRgvYDGS 235 (252)
.+++|+.++.+..+.+++.|+..|+....+. + ..-|..-++.+. .|.+|+++.++++.+.-.+
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~-~------seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFGNL-V------AANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhccC-C------CHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 4678888888888889999999888753321 1 122344444444 3678999999998877654
No 52
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=26.40 E-value=1.8e+02 Score=25.85 Aligned_cols=134 Identities=14% Similarity=0.030 Sum_probs=77.8
Q ss_pred cccccCC-CCceeccchhhhHHHhhchhHHHHHHHHHHHHhccCCCCCCCCCCCCcceeeeccccccccCCCCccccccc
Q 043673 81 VAFFDQD-DNGIIYPWETYSGLRQIGFNIIASLVLAFVINLGLTYPTLPGWFPSPLLPIYIHNIHRSKHGSDSGTYDTEG 159 (252)
Q Consensus 81 vaFFDrD-~DGiI~P~DTy~GfR~LGf~~~~s~~aa~~I~~~lSy~T~~sw~PdP~f~Iyv~nIHk~kHGSDSg~YD~eG 159 (252)
-.-+|++ ++|.|...|-+.=. ......++--||...+--.+... + -|+=.|.-. -.-|..++.-
T Consensus 39 F~kl~~~~~~g~lt~eef~~i~-----~~~~Np~~~rI~~~f~~~~~~~~-v---~F~~Fv~~l-s~f~~~~~~~----- 103 (187)
T KOG0034|consen 39 FKKLDRNNGDGYLTKEEFLSIP-----ELALNPLADRIIDRFDTDGNGDP-V---DFEEFVRLL-SVFSPKASKR----- 103 (187)
T ss_pred HHHhccccccCccCHHHHHHHH-----HHhcCcHHHHHHHHHhccCCCCc-c---CHHHHHHHH-hhhcCCccHH-----
Confidence 3457888 88999887765444 44445556666666653332221 0 000000000 0001111111
Q ss_pred cccchhhhHHHhhhcCCCCCCCCHHHHHHHHHcccCcCCchhhHHHHHHHHHHHHhh---hCCCCccchhhhcccccch
Q 043673 160 RYTPVNLENMFSKYARTVPDKLTLGEVWNLTEGNRLAFDLFGWVAAKLEWILLYILA---RDEEGLLSKEAVRRCFDGS 235 (252)
Q Consensus 160 rFvP~kFE~iFsKya~~~~d~LT~~El~~m~~gnR~~~D~~GW~aa~~EW~~~y~L~---~~~dG~l~KEdiRgvYDGS 235 (252)
+|-+=.|.-|+....+.++-.|+..+++.=....+-- .....+=.+-..+. +|+||.++.|+-+.++-.+
T Consensus 104 ----~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~--~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 104 ----EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDM--SDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred ----HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcc--hHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 5677789999998878899999998888544433321 24444444444444 5899999999988776543
No 53
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=26.35 E-value=89 Score=27.97 Aligned_cols=71 Identities=15% Similarity=0.043 Sum_probs=43.2
Q ss_pred HHHhhhcCCCCCCCCHHHHHHHHHcc----cCcCCchhhHHHHHHHHHHHHhh---hCCCCccchhhhccc--ccchhhH
Q 043673 168 NMFSKYARTVPDKLTLGEVWNLTEGN----RLAFDLFGWVAAKLEWILLYILA---RDEEGLLSKEAVRRC--FDGSLFE 238 (252)
Q Consensus 168 ~iFsKya~~~~d~LT~~El~~m~~gn----R~~~D~~GW~aa~~EW~~~y~L~---~~~dG~l~KEdiRgv--YDGSLF~ 238 (252)
=.|.-|+.++.+.+|..|+.+++++. .+...| =-....|=.+-.++. .++||.|+-|+...- =|-+|+.
T Consensus 104 w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~--~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~i~~ 181 (193)
T KOG0044|consen 104 WAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALP--EDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPSILR 181 (193)
T ss_pred hhheeecCCCCceEcHHHHHHHHHHHHHHcccccCC--cccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHHHHH
Confidence 34888888888999999999998852 221122 111223334444444 488999998776542 2444544
Q ss_pred HH
Q 043673 239 YC 240 (252)
Q Consensus 239 ~i 240 (252)
.+
T Consensus 182 ~l 183 (193)
T KOG0044|consen 182 AL 183 (193)
T ss_pred Hh
Confidence 44
No 54
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=26.07 E-value=28 Score=31.02 Aligned_cols=30 Identities=30% Similarity=0.415 Sum_probs=26.8
Q ss_pred cccccccCCCCceeccchhhhHHHhhchhH
Q 043673 79 QHVAFFDQDDNGIIYPWETYSGLRQIGFNI 108 (252)
Q Consensus 79 qHvaFFDrD~DGiI~P~DTy~GfR~LGf~~ 108 (252)
---..||.|++|-|.--|-..+.|+|||.+
T Consensus 37 e~f~lfd~~~~g~iD~~EL~vAmralGFE~ 66 (172)
T KOG0028|consen 37 EAFELFDPDMAGKIDVEELKVAMRALGFEP 66 (172)
T ss_pred HHHHhhccCCCCcccHHHHHHHHHHcCCCc
Confidence 345789999999999999999999999993
No 55
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=25.62 E-value=98 Score=23.45 Aligned_cols=32 Identities=13% Similarity=0.208 Sum_probs=24.7
Q ss_pred ccchhhhHHHhhhcCCCCCCCCHHHHHHHHHc
Q 043673 161 YTPVNLENMFSKYARTVPDKLTLGEVWNLTEG 192 (252)
Q Consensus 161 FvP~kFE~iFsKya~~~~d~LT~~El~~m~~g 192 (252)
..++..++||...+....+.+++.|.+.++..
T Consensus 48 ~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 48 KNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred CCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 33567888888888777778888888887764
No 56
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=25.41 E-value=96 Score=23.77 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=16.9
Q ss_pred ccccchhhhHHHhhhcCCCCCCCCHHHHHHHHH
Q 043673 159 GRYTPVNLENMFSKYARTVPDKLTLGEVWNLTE 191 (252)
Q Consensus 159 GrFvP~kFE~iFsKya~~~~d~LT~~El~~m~~ 191 (252)
|....+.|.+++.++-.- ...+|..|+.+|++
T Consensus 27 g~Is~~EL~~~l~~~~~l-g~k~t~~ev~~m~~ 58 (88)
T cd05029 27 NTLSKKELKELIQKELTI-GSKLQDAEIAKLME 58 (88)
T ss_pred CEECHHHHHHHHHHHHhc-CCCCCHHHHHHHHH
Confidence 355556666666552111 13456666666665
No 57
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=24.84 E-value=16 Score=28.92 Aligned_cols=42 Identities=24% Similarity=0.498 Sum_probs=29.7
Q ss_pred CCCCCCCCCcceeeeccccccccCCCCccccccccccchhhhHHHhhhcCCCCCCC
Q 043673 126 TLPGWFPSPLLPIYIHNIHRSKHGSDSGTYDTEGRYTPVNLENMFSKYARTVPDKL 181 (252)
Q Consensus 126 T~~sw~PdP~f~Iyv~nIHk~kHGSDSg~YD~eGrFvP~kFE~iFsKya~~~~d~L 181 (252)
+.|.|+|..+. ..++|++|.+ .+..--.+.++.|-|++.|.-
T Consensus 23 ~vP~w~P~~l~-------~La~~~~~~~-------~I~~tvk~tl~eFkrtH~D~W 64 (90)
T PF11919_consen 23 DVPPWMPEVLE-------ELARHANDPQ-------PIRTTVKKTLSEFKRTHQDTW 64 (90)
T ss_dssp -SS-HHHHHHH-------HHHTTSSS-S-------SHHHHTHHHHHHHHHHTSTTH
T ss_pred CCcccHHHHHH-------HHHHHhCCCc-------hHHHHHHHHHHHHHHhCcccH
Confidence 34889998763 3678988866 667778888888888887654
No 58
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=24.83 E-value=89 Score=24.06 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=25.2
Q ss_pred cchhhhHHHhhhcCCCCCCCCHHHHHHHHHc
Q 043673 162 TPVNLENMFSKYARTVPDKLTLGEVWNLTEG 192 (252)
Q Consensus 162 vP~kFE~iFsKya~~~~d~LT~~El~~m~~g 192 (252)
.|...++|++..+....+.+++.|.+.|+..
T Consensus 50 ~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 50 DPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred CHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 4567888999888887788999999888764
No 59
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=24.67 E-value=71 Score=24.14 Aligned_cols=72 Identities=15% Similarity=0.088 Sum_probs=42.1
Q ss_pred hhhhHHHhhhcC-CC-CCCCCHHHHHHHHHcccCcCCchhhHHHHHHHHHHHHhh-hCCCCccchhhhcccc-cchhh
Q 043673 164 VNLENMFSKYAR-TV-PDKLTLGEVWNLTEGNRLAFDLFGWVAAKLEWILLYILA-RDEEGLLSKEAVRRCF-DGSLF 237 (252)
Q Consensus 164 ~kFE~iFsKya~-~~-~d~LT~~El~~m~~gnR~~~D~~GW~aa~~EW~~~y~L~-~~~dG~l~KEdiRgvY-DGSLF 237 (252)
..+-++|..|+. .+ .+.||..|+..+++.+. .+.+|--...-|+..++..+ .+.+|.+.-++...+. ..|||
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~--g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~ 83 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKEL--SEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIA 83 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHh--HHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 346788999997 65 58999999999987521 00111111122444444333 3567899877764433 33444
No 60
>TIGR03639 cas1_NMENI CRISPR-associated endonuclease Cas1, NMENI subtype. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.
Probab=24.54 E-value=2.5e+02 Score=25.97 Aligned_cols=84 Identities=18% Similarity=0.214 Sum_probs=66.2
Q ss_pred ccchhhhHHHhhchhHHHHHHHHHHHHhccCCCCCCCCCCCCcceeeeccccccccCCCCccccccccccchhhhH-HHh
Q 043673 93 YPWETYSGLRQIGFNIIASLVLAFVINLGLTYPTLPGWFPSPLLPIYIHNIHRSKHGSDSGTYDTEGRYTPVNLEN-MFS 171 (252)
Q Consensus 93 ~P~DTy~GfR~LGf~~~~s~~aa~~I~~~lSy~T~~sw~PdP~f~Iyv~nIHk~kHGSDSg~YD~eGrFvP~kFE~-iFs 171 (252)
-|.|-++..-..|++++.+.+...++..+| || ||.-+|....|.-|=+||-.=-|.|- -+. +|+
T Consensus 167 p~~DpvNa~LsygY~iL~~~v~~al~~~GL----------dP----~iGflH~~~~~r~sLa~DLmE~FRpi-VD~~V~~ 231 (278)
T TIGR03639 167 DGEDPINAALNYGYAILRSAVARALVKSGL----------LP----RLGIFHKSEYNPFNLADDLMEPFRPL-VDYLVYE 231 (278)
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHcCC----------Cc----ccccccCCCCCCcchhHhhhhhhHHH-HHHHHHH
Confidence 678999999999999999999999999888 67 47779999999999999999999984 566 466
Q ss_pred hhcCCCCCCCCHHHHHHHHH
Q 043673 172 KYARTVPDKLTLGEVWNLTE 191 (252)
Q Consensus 172 Kya~~~~d~LT~~El~~m~~ 191 (252)
-..+...+.|+..-...++.
T Consensus 232 ~~~~~~~~~l~~e~k~~l~~ 251 (278)
T TIGR03639 232 LLIEEFNDDLTKEIKRKLFS 251 (278)
T ss_pred hcccccccccCHHHHHHHHH
Confidence 44443334676655555544
No 61
>PF10660 MitoNEET_N: Iron-containing outer mitochondrial membrane protein N-terminus ; InterPro: IPR019610 The CDGSH iron sulphur domain are a group of iron-sulphur (Fe-S) clusters and a unique 39 amino acid CDGSH domain [C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H]. The CDGSH iron sulphur domain protein (also referred to as mitoNEET) is an integral membrane protein located in the outer mitochondrial membrane and whose function may be to transport iron into the mitochondria []. Iron in turn is essential for the function of several mitochondrial enzymes. This entry represents the N-terminal of the mitoNEET and Miner-type proteins that carry a CDGSH-type cluster-binding domain (IPR018967 from INTERPRO) that coordinate a redox-active 2Fe-2S cluster. In the outer mitochondrian membrane (OMM), the CDGSH 2Fe-2S-containing domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by the N-terminal domain found in higher vertebrates [, , ]. The whole protein regulates oxidative capacity and may function in electron transfer, for instance in redox reactions with metabolic intermediates, cofactors and/or proteins localized at the OMM.; GO: 0051537 2 iron, 2 sulfur cluster binding, 0043231 intracellular membrane-bounded organelle; PDB: 2R13_A 3REE_A 2QD0_B.
Probab=22.47 E-value=33 Score=25.94 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=0.9
Q ss_pred chhhhHHHhhchhHHHHHHHHHHHHhccCCCCCCCCC
Q 043673 95 WETYSGLRQIGFNIIASLVLAFVINLGLTYPTLPGWF 131 (252)
Q Consensus 95 ~DTy~GfR~LGf~~~~s~~aa~~I~~~lSy~T~~sw~ 131 (252)
-||+.||-.||+.-.++++.-++.=++++|.+.....
T Consensus 22 P~s~gg~f~Ls~kdWl~Lvp~~~~va~igYlayk~f~ 58 (64)
T PF10660_consen 22 PDSFGGFFKLSVKDWLALVPFAAAVAGIGYLAYKPFC 58 (64)
T ss_dssp ----------------------------------CC-
T ss_pred cccccccccccHHHHHHHHhHHHHHHHHHHHhheeec
Confidence 4899999999999988888777777788887755443
No 62
>PF12860 PAS_7: PAS fold
Probab=22.46 E-value=1e+02 Score=23.29 Aligned_cols=55 Identities=15% Similarity=0.280 Sum_probs=37.5
Q ss_pred ccccccccc--chhhhHHHhhhcCCCCCCCCHHHHHHHHHcccC--cCCchhhHHHHHH
Q 043673 154 TYDTEGRYT--PVNLENMFSKYARTVPDKLTLGEVWNLTEGNRL--AFDLFGWVAAKLE 208 (252)
Q Consensus 154 ~YD~eGrFv--P~kFE~iFsKya~~~~d~LT~~El~~m~~gnR~--~~D~~GW~aa~~E 208 (252)
.||.+||.+ -++|.+||.--...-.-+.++.++.+.+..+.. ..++-.|+...++
T Consensus 10 v~D~~~rl~~~N~~~~~l~~~~~~~~~~G~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 68 (115)
T PF12860_consen 10 VFDSDGRLVFWNQRFRELFGLPPEMLRPGASFRDLLRRLAERGEFPPGDPEAWVRQRLA 68 (115)
T ss_pred EEcCCCeEEeEcHHHHHHhCCCHHHhcCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 689999865 578999987655444457899999988864333 3555566555543
No 63
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=22.01 E-value=1.1e+02 Score=23.38 Aligned_cols=30 Identities=7% Similarity=0.169 Sum_probs=24.2
Q ss_pred hhhhHHHhhhcCCCCCCCCHHHHHHHHHcc
Q 043673 164 VNLENMFSKYARTVPDKLTLGEVWNLTEGN 193 (252)
Q Consensus 164 ~kFE~iFsKya~~~~d~LT~~El~~m~~gn 193 (252)
...++|++..+....+.+++.|.+.|+..-
T Consensus 53 ~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 53 MLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 457888888888777889999998888753
Done!