BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043674
         (891 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UPA|A Chain A, Carboxyethylarginine Synthase From Streptomyces
           Clavuligerus (semet Structure)
 pdb|1UPA|B Chain B, Carboxyethylarginine Synthase From Streptomyces
           Clavuligerus (semet Structure)
 pdb|1UPA|C Chain C, Carboxyethylarginine Synthase From Streptomyces
           Clavuligerus (semet Structure)
 pdb|1UPA|D Chain D, Carboxyethylarginine Synthase From Streptomyces
           Clavuligerus (semet Structure)
 pdb|2IHT|A Chain A, Carboxyethylarginine Synthase From Streptomyces
           Clavuligerus: Semet Structure
 pdb|2IHT|B Chain B, Carboxyethylarginine Synthase From Streptomyces
           Clavuligerus: Semet Structure
 pdb|2IHT|C Chain C, Carboxyethylarginine Synthase From Streptomyces
           Clavuligerus: Semet Structure
 pdb|2IHT|D Chain D, Carboxyethylarginine Synthase From Streptomyces
           Clavuligerus: Semet Structure
          Length = 573

 Score = 34.3 bits (77), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 622 YDYRERIDLKKYPKREQSKVNVKHVKIHCTISPIEEKIRADIDELLEENLEFWLRFSTSV 681
           YDY E  DL+  P   Q  +  K V+I  T++PI    R D+D ++ + L F   F T+ 
Sbjct: 296 YDYAE--DLR--PSXWQKGIEKKTVRISPTVNPIPRVYRPDVD-VVTDVLAFVEHFETAT 350

Query: 682 HQI-QKYQSTVQDLKAELAR-LKDKKKQE 708
                K +  ++ L+A +A  L D +  E
Sbjct: 351 ASFGAKQRHDIEPLRARIAEFLADPETYE 379


>pdb|1UPB|A Chain A, Carboxyethylarginine Synthase From Streptomyces
           Clavuligerus
 pdb|1UPB|B Chain B, Carboxyethylarginine Synthase From Streptomyces
           Clavuligerus
 pdb|1UPB|C Chain C, Carboxyethylarginine Synthase From Streptomyces
           Clavuligerus
 pdb|1UPB|D Chain D, Carboxyethylarginine Synthase From Streptomyces
           Clavuligerus
 pdb|1UPC|A Chain A, Carboxyethylarginine Synthase From Streptomyces
           Clavuligerus
 pdb|1UPC|B Chain B, Carboxyethylarginine Synthase From Streptomyces
           Clavuligerus
 pdb|1UPC|C Chain C, Carboxyethylarginine Synthase From Streptomyces
           Clavuligerus
 pdb|1UPC|D Chain D, Carboxyethylarginine Synthase From Streptomyces
           Clavuligerus
 pdb|1UPC|E Chain E, Carboxyethylarginine Synthase From Streptomyces
           Clavuligerus
 pdb|1UPC|F Chain F, Carboxyethylarginine Synthase From Streptomyces
           Clavuligerus
 pdb|2IHV|A Chain A, Carboxyethylarginine Synthase From Streptomyces
           Clavuligerus: 5-Guanidinovaleric Acid Complex
 pdb|2IHV|B Chain B, Carboxyethylarginine Synthase From Streptomyces
           Clavuligerus: 5-Guanidinovaleric Acid Complex
 pdb|2IHV|C Chain C, Carboxyethylarginine Synthase From Streptomyces
           Clavuligerus: 5-Guanidinovaleric Acid Complex
 pdb|2IHV|D Chain D, Carboxyethylarginine Synthase From Streptomyces
           Clavuligerus: 5-Guanidinovaleric Acid Complex
 pdb|2IHU|A Chain A, Carboxyethylarginine Synthase From Streptomyces
           Clavuligerus: Putative Reaction Intermediate Complex
 pdb|2IHU|B Chain B, Carboxyethylarginine Synthase From Streptomyces
           Clavuligerus: Putative Reaction Intermediate Complex
 pdb|2IHU|C Chain C, Carboxyethylarginine Synthase From Streptomyces
           Clavuligerus: Putative Reaction Intermediate Complex
 pdb|2IHU|D Chain D, Carboxyethylarginine Synthase From Streptomyces
           Clavuligerus: Putative Reaction Intermediate Complex
          Length = 573

 Score = 34.3 bits (77), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 622 YDYRERIDLKKYPKREQSKVNVKHVKIHCTISPIEEKIRADIDELLEENLEFWLRFSTSV 681
           YDY E  DL+  P   Q  +  K V+I  T++PI    R D+D ++ + L F   F T+ 
Sbjct: 296 YDYAE--DLR--PSMWQKGIEKKTVRISPTVNPIPRVYRPDVD-VVTDVLAFVEHFETAT 350

Query: 682 HQI-QKYQSTVQDLKAELAR-LKDKKKQE 708
                K +  ++ L+A +A  L D +  E
Sbjct: 351 ASFGAKQRHDIEPLRARIAEFLADPETYE 379


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.127    0.346 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,428,922
Number of Sequences: 62578
Number of extensions: 719099
Number of successful extensions: 2057
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2041
Number of HSP's gapped (non-prelim): 49
length of query: 891
length of database: 14,973,337
effective HSP length: 107
effective length of query: 784
effective length of database: 8,277,491
effective search space: 6489552944
effective search space used: 6489552944
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)