Query 043674
Match_columns 891
No_of_seqs 135 out of 157
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 07:15:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07765 KIP1: KIP1-like prote 99.9 1.6E-25 3.4E-30 195.8 5.3 52 1-52 23-74 (74)
2 TIGR00606 rad50 rad50. This fa 97.4 0.29 6.2E-06 63.2 34.9 102 716-829 989-1092(1311)
3 TIGR02169 SMC_prok_A chromosom 97.0 0.029 6.3E-07 69.3 19.4 50 151-200 673-722 (1164)
4 KOG4674 Uncharacterized conser 97.0 0.61 1.3E-05 61.5 30.4 224 148-377 657-891 (1822)
5 KOG0161 Myosin class II heavy 96.9 0.026 5.7E-07 74.2 18.7 172 661-834 1565-1766(1930)
6 TIGR02168 SMC_prok_B chromosom 96.9 0.047 1E-06 67.2 20.0 50 150-199 675-724 (1179)
7 PF00261 Tropomyosin: Tropomyo 96.9 0.061 1.3E-06 56.9 18.3 54 148-201 32-85 (237)
8 PF00261 Tropomyosin: Tropomyo 96.9 0.014 3E-07 61.6 13.0 52 325-376 171-222 (237)
9 TIGR02168 SMC_prok_B chromosom 96.8 0.071 1.5E-06 65.7 20.1 8 643-650 1114-1121(1179)
10 TIGR02169 SMC_prok_A chromosom 96.7 0.097 2.1E-06 64.9 20.6 25 502-526 977-1001(1164)
11 KOG0250 DNA repair protein RAD 96.7 0.074 1.6E-06 66.4 18.6 199 165-377 220-441 (1074)
12 PHA02562 46 endonuclease subun 96.6 0.12 2.6E-06 59.8 18.9 158 222-398 235-392 (562)
13 PRK03918 chromosome segregatio 96.5 0.12 2.5E-06 63.2 19.0 49 324-372 385-433 (880)
14 TIGR00606 rad50 rad50. This fa 96.4 0.14 3.1E-06 65.8 20.0 70 299-370 948-1017(1311)
15 PRK02224 chromosome segregatio 96.3 0.43 9.2E-06 58.6 22.5 71 300-372 625-695 (880)
16 COG1196 Smc Chromosome segrega 96.3 0.15 3.3E-06 65.0 18.9 23 503-525 969-991 (1163)
17 KOG0161 Myosin class II heavy 96.2 8.6 0.00019 52.0 37.9 207 148-377 1283-1496(1930)
18 PRK11637 AmiB activator; Provi 96.0 0.51 1.1E-05 53.8 19.6 54 324-377 192-245 (428)
19 PF10174 Cast: RIM-binding pro 95.7 0.51 1.1E-05 58.2 19.1 217 153-377 358-588 (775)
20 PRK02224 chromosome segregatio 95.7 0.98 2.1E-05 55.5 21.4 13 501-513 468-480 (880)
21 PRK03918 chromosome segregatio 95.6 0.37 8E-06 58.9 17.5 36 226-261 547-582 (880)
22 COG1196 Smc Chromosome segrega 95.6 0.4 8.6E-06 61.3 18.2 79 299-377 825-903 (1163)
23 KOG0933 Structural maintenance 95.4 0.49 1.1E-05 59.1 17.2 112 148-266 680-804 (1174)
24 COG1579 Zn-ribbon protein, pos 95.3 0.31 6.6E-06 52.6 13.4 103 148-268 34-136 (239)
25 PF05701 WEMBL: Weak chloropla 94.8 3.6 7.9E-05 48.7 21.5 78 300-377 342-419 (522)
26 PRK04863 mukB cell division pr 94.7 1.8 3.9E-05 57.1 20.3 53 150-202 277-329 (1486)
27 KOG0996 Structural maintenance 94.7 0.95 2.1E-05 57.5 16.9 218 151-377 777-1010(1293)
28 KOG0996 Structural maintenance 94.6 0.53 1.1E-05 59.6 14.6 139 214-378 820-962 (1293)
29 PF05667 DUF812: Protein of un 94.4 3.7 8E-05 49.6 20.6 197 148-373 324-527 (594)
30 PF00038 Filament: Intermediat 94.4 5.3 0.00012 43.3 20.2 46 332-377 197-242 (312)
31 KOG4674 Uncharacterized conser 94.2 30 0.00065 46.8 35.6 219 151-377 216-494 (1822)
32 PF15070 GOLGA2L5: Putative go 94.2 4.5 9.7E-05 49.1 20.8 202 152-371 22-243 (617)
33 PF09789 DUF2353: Uncharacteri 93.9 1.5 3.3E-05 49.2 15.1 198 154-377 11-215 (319)
34 KOG0250 DNA repair protein RAD 93.5 3 6.6E-05 52.9 18.1 174 182-375 283-467 (1074)
35 PF07888 CALCOCO1: Calcium bin 93.4 1.8 4E-05 51.6 15.4 48 330-377 262-309 (546)
36 PRK04778 septation ring format 93.2 4.7 0.0001 48.1 18.6 211 147-373 193-426 (569)
37 PLN03229 acetyl-coenzyme A car 93.2 3 6.5E-05 51.3 17.0 110 221-337 528-680 (762)
38 PF09728 Taxilin: Myosin-like 93.2 8.6 0.00019 43.0 19.4 208 150-378 41-264 (309)
39 PF10174 Cast: RIM-binding pro 92.9 2.3 4.9E-05 52.8 15.7 21 725-745 699-719 (775)
40 PRK11637 AmiB activator; Provi 92.9 13 0.00027 42.8 20.8 34 338-371 220-253 (428)
41 PF05622 HOOK: HOOK protein; 92.8 0.03 6.6E-07 67.6 0.0 50 329-378 362-411 (713)
42 PRK01156 chromosome segregatio 92.6 5 0.00011 49.8 18.4 34 332-365 411-444 (895)
43 PF07888 CALCOCO1: Calcium bin 92.3 12 0.00025 45.1 19.9 105 152-262 143-247 (546)
44 KOG0971 Microtubule-associated 92.1 37 0.0008 43.2 24.0 117 235-375 325-441 (1243)
45 PF00038 Filament: Intermediat 91.9 14 0.0003 40.2 18.8 28 149-176 51-78 (312)
46 KOG0963 Transcription factor/C 91.9 12 0.00025 45.5 19.3 105 150-270 165-270 (629)
47 PF09730 BicD: Microtubule-ass 91.8 2.7 5.9E-05 51.7 14.5 53 148-200 260-313 (717)
48 KOG0612 Rho-associated, coiled 91.6 10 0.00022 49.0 19.2 37 329-365 615-651 (1317)
49 KOG0964 Structural maintenance 91.5 11 0.00024 47.7 19.0 207 153-373 273-489 (1200)
50 PF13851 GAS: Growth-arrest sp 91.2 12 0.00026 39.4 16.7 108 151-268 26-133 (201)
51 PRK04778 septation ring format 91.2 8 0.00017 46.2 17.3 29 42-70 140-168 (569)
52 KOG0933 Structural maintenance 91.1 10 0.00022 48.2 18.2 225 150-377 739-1013(1174)
53 KOG0978 E3 ubiquitin ligase in 91.1 21 0.00045 44.2 20.6 207 149-377 397-613 (698)
54 PF05701 WEMBL: Weak chloropla 91.0 15 0.00032 43.8 19.1 57 148-204 133-189 (522)
55 KOG4643 Uncharacterized coiled 90.4 4.6 0.0001 51.0 14.6 163 233-399 413-592 (1195)
56 PF05911 DUF869: Plant protein 90.3 6.8 0.00015 48.8 16.0 168 152-346 589-756 (769)
57 KOG1003 Actin filament-coating 90.1 15 0.00032 39.2 16.0 120 149-268 1-128 (205)
58 PF08614 ATG16: Autophagy prot 90.0 3.3 7.2E-05 42.7 11.3 84 150-253 100-183 (194)
59 PF04012 PspA_IM30: PspA/IM30 89.9 27 0.00059 36.4 18.9 99 171-270 42-140 (221)
60 PF06160 EzrA: Septation ring 89.7 13 0.00029 44.4 17.5 235 144-400 270-549 (560)
61 PF08317 Spc7: Spc7 kinetochor 89.6 29 0.00063 38.8 18.9 46 222-267 143-188 (325)
62 KOG0994 Extracellular matrix g 89.5 37 0.00081 44.2 21.0 42 332-373 1705-1746(1758)
63 PF12252 SidE: Dot/Icm substra 89.4 33 0.00072 44.2 20.5 206 150-398 1013-1250(1439)
64 KOG0612 Rho-associated, coiled 89.3 25 0.00055 45.7 19.8 48 326-373 619-666 (1317)
65 COG3883 Uncharacterized protei 89.0 22 0.00047 39.5 16.9 51 328-378 167-217 (265)
66 PF15070 GOLGA2L5: Putative go 89.0 50 0.0011 40.5 21.5 93 150-243 85-182 (617)
67 KOG0976 Rho/Rac1-interacting s 88.9 19 0.00041 45.0 17.7 207 150-366 83-306 (1265)
68 PF08614 ATG16: Autophagy prot 88.8 0.97 2.1E-05 46.6 6.4 160 171-367 22-181 (194)
69 PF09789 DUF2353: Uncharacteri 88.7 39 0.00083 38.4 19.0 210 148-370 96-319 (319)
70 KOG1853 LIS1-interacting prote 88.6 3.5 7.5E-05 45.3 10.5 52 320-371 130-184 (333)
71 PF05667 DUF812: Protein of un 88.5 26 0.00057 42.6 18.7 52 147-198 330-381 (594)
72 PRK04863 mukB cell division pr 88.5 30 0.00066 46.3 20.6 52 151-202 347-398 (1486)
73 PF12128 DUF3584: Protein of u 88.4 16 0.00035 47.5 18.0 32 326-357 812-843 (1201)
74 PF05622 HOOK: HOOK protein; 88.3 0.14 3.1E-06 62.0 0.0 133 250-397 268-403 (713)
75 KOG4643 Uncharacterized coiled 88.2 93 0.002 40.3 24.4 58 147-204 172-229 (1195)
76 COG1579 Zn-ribbon protein, pos 88.2 41 0.00089 36.8 18.2 126 222-380 46-171 (239)
77 PRK01156 chromosome segregatio 87.6 45 0.00097 41.7 20.7 24 724-747 673-696 (895)
78 KOG0980 Actin-binding protein 87.1 55 0.0012 41.6 20.3 109 147-270 328-445 (980)
79 KOG0971 Microtubule-associated 86.8 43 0.00092 42.7 19.0 71 330-400 462-543 (1243)
80 KOG0963 Transcription factor/C 86.7 40 0.00086 41.2 18.4 87 299-397 253-343 (629)
81 KOG0977 Nuclear envelope prote 86.6 28 0.0006 42.1 17.2 32 346-377 291-322 (546)
82 PF15619 Lebercilin: Ciliary p 86.4 31 0.00068 36.4 15.7 79 179-268 11-108 (194)
83 KOG0977 Nuclear envelope prote 85.8 45 0.00097 40.4 18.3 31 331-361 304-334 (546)
84 PRK09039 hypothetical protein; 85.8 9.8 0.00021 43.0 12.6 136 222-397 47-184 (343)
85 PF12128 DUF3584: Protein of u 85.7 59 0.0013 42.6 20.9 43 148-190 603-645 (1201)
86 KOG0946 ER-Golgi vesicle-tethe 85.0 20 0.00044 44.8 15.2 76 298-373 809-884 (970)
87 PF14662 CCDC155: Coiled-coil 84.8 39 0.00086 35.9 15.4 19 184-202 5-23 (193)
88 PF08317 Spc7: Spc7 kinetochor 84.5 39 0.00084 37.8 16.3 52 148-199 152-203 (325)
89 PRK09039 hypothetical protein; 84.4 21 0.00046 40.4 14.4 108 148-261 77-184 (343)
90 PF05557 MAD: Mitotic checkpoi 84.4 0.3 6.6E-06 59.3 0.0 42 332-377 252-293 (722)
91 PF12718 Tropomyosin_1: Tropom 84.0 38 0.00083 34.0 14.4 111 148-268 10-120 (143)
92 PF01576 Myosin_tail_1: Myosin 83.7 0.34 7.4E-06 60.3 0.0 205 164-377 16-234 (859)
93 PF12718 Tropomyosin_1: Tropom 83.1 45 0.00099 33.5 14.6 91 162-265 3-96 (143)
94 PF04849 HAP1_N: HAP1 N-termin 83.1 69 0.0015 36.3 17.3 111 150-269 172-282 (306)
95 KOG0976 Rho/Rac1-interacting s 83.0 48 0.001 41.8 17.0 177 174-377 85-282 (1265)
96 smart00787 Spc7 Spc7 kinetocho 81.7 98 0.0021 35.0 18.6 49 222-270 138-186 (312)
97 KOG0018 Structural maintenance 81.5 48 0.001 42.8 16.8 46 332-377 397-442 (1141)
98 COG1842 PspA Phage shock prote 81.4 14 0.0003 39.8 10.9 59 325-383 87-145 (225)
99 KOG0979 Structural maintenance 81.4 96 0.0021 40.1 19.2 175 153-371 175-359 (1072)
100 KOG4593 Mitotic checkpoint pro 81.4 1.1E+02 0.0024 38.1 19.2 47 222-268 152-198 (716)
101 PF09726 Macoilin: Transmembra 81.0 1.2E+02 0.0025 38.0 19.8 27 148-174 421-447 (697)
102 TIGR03185 DNA_S_dndD DNA sulfu 80.9 1.4E+02 0.0031 36.4 21.8 51 154-204 204-254 (650)
103 KOG0978 E3 ubiquitin ligase in 80.8 1.4E+02 0.0031 37.4 20.1 136 212-372 482-622 (698)
104 PF15619 Lebercilin: Ciliary p 80.1 37 0.00079 35.9 13.2 120 146-265 13-148 (194)
105 KOG0994 Extracellular matrix g 80.0 1.5E+02 0.0033 39.1 20.1 49 222-270 1592-1640(1758)
106 PF05010 TACC: Transforming ac 78.6 63 0.0014 34.7 14.5 41 222-262 98-138 (207)
107 PRK10698 phage shock protein P 78.5 1E+02 0.0022 33.1 17.5 112 156-268 28-139 (222)
108 PF06005 DUF904: Protein of un 77.9 7.9 0.00017 35.0 6.6 65 327-397 8-72 (72)
109 TIGR02680 conserved hypothetic 77.8 1E+02 0.0022 41.2 18.9 103 167-270 217-325 (1353)
110 KOG1899 LAR transmembrane tyro 77.6 63 0.0014 39.8 15.4 83 153-238 105-198 (861)
111 COG1340 Uncharacterized archae 77.5 90 0.0019 35.3 15.8 238 17-328 30-285 (294)
112 PF04012 PspA_IM30: PspA/IM30 77.4 36 0.00077 35.5 12.2 133 217-397 26-158 (221)
113 KOG4673 Transcription factor T 76.8 1.2E+02 0.0025 38.0 17.4 119 150-268 513-638 (961)
114 PLN03229 acetyl-coenzyme A car 76.6 15 0.00034 45.5 10.5 52 215-270 473-525 (762)
115 TIGR03007 pepcterm_ChnLen poly 76.2 1.1E+02 0.0024 35.6 17.0 35 333-367 313-347 (498)
116 KOG1029 Endocytic adaptor prot 76.1 79 0.0017 39.9 15.9 48 330-377 451-505 (1118)
117 KOG0995 Centromere-associated 75.3 2.1E+02 0.0045 35.1 19.6 70 326-395 428-502 (581)
118 COG1842 PspA Phage shock prote 75.2 92 0.002 33.7 14.8 65 305-372 123-187 (225)
119 KOG0980 Actin-binding protein 74.3 2E+02 0.0043 37.0 18.8 15 32-46 190-204 (980)
120 PF14662 CCDC155: Coiled-coil 74.2 1.3E+02 0.0028 32.2 20.2 41 222-262 96-136 (193)
121 KOG1937 Uncharacterized conser 73.6 1.9E+02 0.0042 34.6 17.6 170 161-373 243-425 (521)
122 PF13514 AAA_27: AAA domain 72.8 2.8E+02 0.006 36.2 20.7 152 222-377 674-834 (1111)
123 KOG0964 Structural maintenance 72.4 1E+02 0.0023 39.8 16.0 53 148-200 233-285 (1200)
124 PF06160 EzrA: Septation ring 72.4 2E+02 0.0044 34.7 18.3 49 147-195 189-241 (560)
125 PF05377 FlaC_arch: Flagella a 72.4 7.9 0.00017 33.6 4.9 41 331-371 1-41 (55)
126 smart00787 Spc7 Spc7 kinetocho 71.7 1.3E+02 0.0029 33.9 15.6 110 148-266 147-256 (312)
127 PF05010 TACC: Transforming ac 71.5 1.5E+02 0.0033 31.9 19.7 52 148-199 5-56 (207)
128 PF10168 Nup88: Nuclear pore c 71.4 53 0.0012 40.9 13.5 33 170-202 569-601 (717)
129 KOG0018 Structural maintenance 71.0 1.4E+02 0.0031 38.8 16.9 112 148-267 146-266 (1141)
130 KOG4673 Transcription factor T 71.0 2.2E+02 0.0047 35.9 17.7 55 327-381 577-635 (961)
131 PF05557 MAD: Mitotic checkpoi 70.9 1.4 2.9E-05 53.8 0.0 45 333-377 339-383 (722)
132 KOG0995 Centromere-associated 70.4 17 0.00037 43.8 8.7 124 221-377 235-358 (581)
133 PF01576 Myosin_tail_1: Myosin 69.6 1.5 3.3E-05 54.8 0.0 209 148-374 155-379 (859)
134 PF04849 HAP1_N: HAP1 N-termin 69.3 49 0.0011 37.5 11.5 184 178-380 50-256 (306)
135 PF00769 ERM: Ezrin/radixin/mo 68.9 1.8E+02 0.0039 31.7 15.6 98 218-368 23-120 (246)
136 KOG3850 Predicted membrane pro 68.5 2.5E+02 0.0054 33.2 18.1 104 148-263 263-397 (455)
137 PF13094 CENP-Q: CENP-Q, a CEN 68.2 1E+02 0.0022 30.9 12.6 135 172-337 19-157 (160)
138 PF12325 TMF_TATA_bd: TATA ele 67.9 1.3E+02 0.0029 29.7 13.4 45 221-265 68-112 (120)
139 PF05911 DUF869: Plant protein 67.8 18 0.0004 45.2 8.6 90 148-240 669-759 (769)
140 KOG0946 ER-Golgi vesicle-tethe 67.7 2.9E+02 0.0063 35.4 18.1 172 221-397 671-860 (970)
141 PRK04406 hypothetical protein; 67.6 11 0.00024 34.3 5.0 46 332-377 6-51 (75)
142 TIGR00634 recN DNA repair prot 67.5 2.3E+02 0.005 34.1 17.3 76 485-561 142-223 (563)
143 PF09726 Macoilin: Transmembra 67.4 2.4E+02 0.0053 35.3 17.8 38 512-567 623-660 (697)
144 TIGR00634 recN DNA repair prot 66.7 2.9E+02 0.0063 33.3 19.8 66 301-370 300-365 (563)
145 KOG0962 DNA repair protein RAD 66.6 2.3E+02 0.0049 37.9 17.7 118 150-270 197-332 (1294)
146 PF15450 DUF4631: Domain of un 65.7 2.1E+02 0.0046 34.7 16.1 123 222-360 388-517 (531)
147 PF04912 Dynamitin: Dynamitin 64.7 36 0.00079 38.8 9.7 124 247-375 207-346 (388)
148 PF13514 AAA_27: AAA domain 64.3 4.4E+02 0.0095 34.5 22.4 89 159-247 673-769 (1111)
149 PF15066 CAGE1: Cancer-associa 64.3 97 0.0021 37.1 12.8 69 181-266 332-400 (527)
150 TIGR01843 type_I_hlyD type I s 63.6 2.2E+02 0.0047 31.8 15.2 82 154-238 139-220 (423)
151 PRK10884 SH3 domain-containing 63.2 26 0.00057 37.3 7.6 73 299-374 97-169 (206)
152 COG4372 Uncharacterized protei 63.2 3.2E+02 0.0068 32.5 19.2 24 152-175 88-111 (499)
153 PF04102 SlyX: SlyX; InterPro 62.9 17 0.00036 32.3 5.2 40 336-375 3-42 (69)
154 PRK04325 hypothetical protein; 62.3 14 0.00031 33.3 4.7 45 333-377 5-49 (74)
155 KOG0288 WD40 repeat protein Ti 60.9 1.4E+02 0.0029 35.5 13.1 57 148-204 16-72 (459)
156 PF09755 DUF2046: Uncharacteri 60.2 64 0.0014 36.7 10.2 34 332-365 137-170 (310)
157 PF11559 ADIP: Afadin- and alp 60.0 1.9E+02 0.004 28.7 14.2 94 155-264 55-148 (151)
158 PRK10698 phage shock protein P 59.6 1.9E+02 0.0042 31.0 13.3 52 332-383 94-145 (222)
159 PRK02119 hypothetical protein; 59.3 19 0.00041 32.5 5.0 45 333-377 5-49 (73)
160 TIGR03185 DNA_S_dndD DNA sulfu 59.0 2.6E+02 0.0057 34.2 16.0 27 173-199 391-417 (650)
161 PF07439 DUF1515: Protein of u 59.0 20 0.00044 35.0 5.4 61 301-364 14-74 (112)
162 PF07926 TPR_MLP1_2: TPR/MLP1/ 59.0 1.5E+02 0.0033 29.1 11.6 36 342-377 89-124 (132)
163 PRK10884 SH3 domain-containing 58.7 1.2E+02 0.0026 32.4 11.6 23 150-172 91-113 (206)
164 PLN02939 transferase, transfer 58.4 5.4E+02 0.012 33.8 18.7 43 331-373 352-398 (977)
165 PF14992 TMCO5: TMCO5 family 58.2 72 0.0016 35.8 10.1 142 233-377 9-170 (280)
166 KOG0962 DNA repair protein RAD 57.9 6.2E+02 0.014 34.2 21.2 90 166-261 864-953 (1294)
167 PF09730 BicD: Microtubule-ass 57.2 5.1E+02 0.011 32.9 21.9 58 301-365 264-321 (717)
168 PF00769 ERM: Ezrin/radixin/mo 56.2 3E+02 0.0066 30.0 15.9 110 149-266 2-127 (246)
169 COG0419 SbcC ATPase involved i 55.8 5.5E+02 0.012 32.9 20.5 18 151-168 500-517 (908)
170 PF10473 CENP-F_leu_zip: Leuci 54.6 2.5E+02 0.0055 28.6 16.7 23 349-371 117-139 (140)
171 PF11559 ADIP: Afadin- and alp 54.6 2E+02 0.0044 28.5 11.8 48 223-270 75-122 (151)
172 PRK02793 phi X174 lysis protei 54.5 23 0.0005 31.9 4.7 41 335-375 6-46 (72)
173 PF04102 SlyX: SlyX; InterPro 54.5 48 0.001 29.4 6.6 48 328-375 2-49 (69)
174 TIGR02680 conserved hypothetic 54.1 4.9E+02 0.011 35.0 18.3 96 153-266 743-838 (1353)
175 PF10186 Atg14: UV radiation r 53.4 3.1E+02 0.0067 29.2 15.5 48 219-266 61-108 (302)
176 cd07627 BAR_Vps5p The Bin/Amph 53.4 1.7E+02 0.0036 30.9 11.5 142 227-375 10-160 (216)
177 KOG0999 Microtubule-associated 53.0 5.4E+02 0.012 31.9 18.8 29 663-691 600-628 (772)
178 PRK00295 hypothetical protein; 52.5 25 0.00054 31.3 4.5 40 338-377 6-45 (68)
179 PF04582 Reo_sigmaC: Reovirus 51.8 22 0.00047 40.5 5.0 73 301-373 83-155 (326)
180 TIGR02977 phageshock_pspA phag 51.1 3.3E+02 0.0071 28.9 14.1 102 150-266 36-137 (219)
181 cd07596 BAR_SNX The Bin/Amphip 50.7 2.8E+02 0.006 27.9 12.6 149 223-377 6-164 (218)
182 PF05483 SCP-1: Synaptonemal c 50.1 6.4E+02 0.014 32.0 20.6 60 148-207 109-168 (786)
183 KOG1853 LIS1-interacting prote 49.6 4.1E+02 0.0089 30.0 13.8 104 150-267 64-182 (333)
184 PRK00736 hypothetical protein; 49.0 31 0.00066 30.8 4.5 41 337-377 5-45 (68)
185 PF05278 PEARLI-4: Arabidopsis 49.0 3E+02 0.0064 31.0 12.9 40 222-261 222-261 (269)
186 PF04156 IncA: IncA protein; 48.2 2E+02 0.0043 29.3 10.9 43 222-264 138-180 (191)
187 PF10212 TTKRSYEDQ: Predicted 47.7 6.1E+02 0.013 31.0 17.7 43 147-189 304-353 (518)
188 PRK04406 hypothetical protein; 47.1 64 0.0014 29.4 6.3 47 325-371 6-52 (75)
189 TIGR01005 eps_transp_fam exopo 47.1 3.2E+02 0.007 33.8 14.3 135 227-368 186-333 (754)
190 PRK15422 septal ring assembly 46.9 38 0.00083 31.5 4.9 70 328-397 9-79 (79)
191 KOG4593 Mitotic checkpoint pro 46.2 7.3E+02 0.016 31.5 19.1 30 148-177 94-123 (716)
192 KOG0999 Microtubule-associated 45.6 3.9E+02 0.0084 33.1 13.8 47 331-377 101-147 (772)
193 TIGR03007 pepcterm_ChnLen poly 44.9 5.7E+02 0.012 29.9 17.7 44 223-266 249-292 (498)
194 COG4942 Membrane-bound metallo 44.7 6.2E+02 0.013 30.2 17.0 48 218-265 63-110 (420)
195 KOG4438 Centromere-associated 44.7 6.3E+02 0.014 30.3 18.6 37 324-360 263-299 (446)
196 PF04156 IncA: IncA protein; 44.1 3.6E+02 0.0079 27.4 14.5 13 153-165 82-94 (191)
197 PF12329 TMF_DNA_bd: TATA elem 44.1 1.6E+02 0.0034 26.7 8.3 44 223-266 28-71 (74)
198 PF10168 Nup88: Nuclear pore c 43.3 4.5E+02 0.0099 33.1 14.7 47 222-268 573-619 (717)
199 PF13870 DUF4201: Domain of un 43.0 3.8E+02 0.0082 27.3 16.4 142 187-346 20-161 (177)
200 COG0419 SbcC ATPase involved i 42.4 8.5E+02 0.018 31.2 20.6 37 232-268 312-348 (908)
201 COG5185 HEC1 Protein involved 42.4 2.4E+02 0.0051 34.2 11.3 106 222-331 265-373 (622)
202 PF10267 Tmemb_cc2: Predicted 42.4 6.2E+02 0.013 29.9 14.7 82 147-234 214-318 (395)
203 KOG3958 Putative dynamitin [Cy 42.2 2.4E+02 0.0051 32.4 10.9 204 138-365 79-311 (371)
204 PF10482 CtIP_N: Tumour-suppre 42.1 59 0.0013 32.2 5.6 112 680-808 4-120 (120)
205 PF10805 DUF2730: Protein of u 42.0 92 0.002 29.8 6.9 54 324-377 36-91 (106)
206 PF07227 DUF1423: Protein of u 41.9 1.5E+02 0.0033 35.2 9.9 38 229-266 351-388 (446)
207 PF15294 Leu_zip: Leucine zipp 41.9 3E+02 0.0064 31.1 11.6 104 153-270 133-236 (278)
208 COG1340 Uncharacterized archae 41.3 5.9E+02 0.013 29.1 24.3 91 301-398 185-278 (294)
209 PF01496 V_ATPase_I: V-type AT 40.7 36 0.00078 42.1 5.0 101 163-268 14-114 (759)
210 PRK02793 phi X174 lysis protei 40.7 1.1E+02 0.0023 27.7 6.7 45 327-371 5-49 (72)
211 PF12325 TMF_TATA_bd: TATA ele 39.9 1.7E+02 0.0038 28.9 8.5 17 331-347 97-113 (120)
212 PRK00846 hypothetical protein; 39.4 56 0.0012 30.2 4.8 43 332-374 8-50 (77)
213 PRK00295 hypothetical protein; 39.3 1.1E+02 0.0024 27.4 6.4 42 330-371 5-53 (68)
214 TIGR01005 eps_transp_fam exopo 39.1 7.1E+02 0.015 30.9 15.5 16 180-195 237-252 (754)
215 PF06005 DUF904: Protein of un 38.7 2.3E+02 0.005 25.8 8.4 59 305-370 7-65 (72)
216 PF07111 HCR: Alpha helical co 38.3 9.5E+02 0.021 30.6 19.8 47 331-377 198-261 (739)
217 KOG1029 Endocytic adaptor prot 37.8 1E+03 0.022 30.8 17.2 46 332-377 544-589 (1118)
218 PF11570 E2R135: Coiled-coil r 37.7 4.6E+02 0.01 26.8 11.2 50 148-199 11-60 (136)
219 PRK02119 hypothetical protein; 37.4 1.2E+02 0.0025 27.6 6.4 46 327-372 6-51 (73)
220 COG1382 GimC Prefoldin, chaper 37.3 4.4E+02 0.0095 26.4 11.5 41 332-372 72-112 (119)
221 COG3074 Uncharacterized protei 37.2 72 0.0016 29.3 5.0 38 332-369 27-64 (79)
222 PF10146 zf-C4H2: Zinc finger- 37.0 4.2E+02 0.0091 29.0 11.6 79 177-268 22-100 (230)
223 PF07111 HCR: Alpha helical co 36.9 1E+03 0.022 30.4 19.6 48 222-269 243-290 (739)
224 PF09787 Golgin_A5: Golgin sub 36.8 8.2E+02 0.018 29.4 20.7 115 148-266 119-238 (511)
225 TIGR02977 phageshock_pspA phag 36.7 3.5E+02 0.0076 28.7 10.9 48 331-378 93-140 (219)
226 PF09325 Vps5: Vps5 C terminal 36.7 3.5E+02 0.0076 28.1 10.8 145 222-373 25-171 (236)
227 PRK04325 hypothetical protein; 36.7 1.2E+02 0.0025 27.6 6.3 46 326-371 5-57 (74)
228 cd00632 Prefoldin_beta Prefold 36.7 3.7E+02 0.008 25.3 10.6 97 154-261 1-103 (105)
229 PRK10869 recombination and rep 36.3 62 0.0013 39.0 5.9 74 486-560 139-218 (553)
230 PF13758 Prefoldin_3: Prefoldi 36.0 1.7E+02 0.0036 28.5 7.5 83 175-258 7-98 (99)
231 cd07623 BAR_SNX1_2 The Bin/Amp 35.6 4.6E+02 0.01 27.9 11.6 123 228-357 19-143 (224)
232 COG4026 Uncharacterized protei 35.5 1.2E+02 0.0026 33.4 7.2 75 303-377 104-182 (290)
233 PF06156 DUF972: Protein of un 34.8 1.1E+02 0.0024 29.6 6.3 49 324-372 9-57 (107)
234 PF04111 APG6: Autophagy prote 34.7 4.5E+02 0.0097 29.7 11.9 30 235-264 106-135 (314)
235 PF09766 FimP: Fms-interacting 34.5 7.7E+02 0.017 28.4 14.1 118 150-268 10-148 (355)
236 PRK13169 DNA replication intia 34.1 1.2E+02 0.0026 29.8 6.3 49 324-372 9-57 (110)
237 COG3883 Uncharacterized protei 33.9 7.3E+02 0.016 28.0 17.4 46 331-376 177-222 (265)
238 COG4477 EzrA Negative regulato 33.9 1E+03 0.022 29.5 17.1 197 150-374 116-346 (570)
239 PRK10476 multidrug resistance 33.8 7E+02 0.015 27.8 15.7 61 148-208 89-149 (346)
240 TIGR01843 type_I_hlyD type I s 33.8 7.1E+02 0.015 27.8 19.1 21 352-372 247-267 (423)
241 PF02994 Transposase_22: L1 tr 33.8 86 0.0019 36.0 6.2 48 326-373 140-187 (370)
242 COG3096 MukB Uncharacterized p 33.3 1.2E+03 0.026 30.3 18.2 206 148-373 386-600 (1480)
243 PF04880 NUDE_C: NUDE protein, 33.2 55 0.0012 34.1 4.2 43 171-224 5-50 (166)
244 PF04111 APG6: Autophagy prote 32.8 7.7E+02 0.017 27.9 13.4 49 150-199 21-69 (314)
245 KOG4360 Uncharacterized coiled 32.7 6.9E+02 0.015 30.7 13.2 24 179-202 165-188 (596)
246 PF04642 DUF601: Protein of un 32.4 1.6E+02 0.0034 33.0 7.5 86 166-255 201-293 (311)
247 PF12329 TMF_DNA_bd: TATA elem 32.2 1.2E+02 0.0027 27.4 5.7 36 332-367 35-70 (74)
248 PRK10246 exonuclease subunit S 32.1 1.3E+03 0.028 30.3 24.5 28 154-181 618-645 (1047)
249 PRK00736 hypothetical protein; 31.6 1.7E+02 0.0036 26.2 6.4 42 330-371 5-53 (68)
250 KOG1003 Actin filament-coating 31.6 7.1E+02 0.015 27.1 13.5 21 180-200 11-31 (205)
251 PF04977 DivIC: Septum formati 30.3 1.5E+02 0.0032 25.7 5.8 58 334-401 14-72 (80)
252 COG3074 Uncharacterized protei 30.1 1.7E+02 0.0036 27.1 6.1 67 328-394 9-76 (79)
253 PF15450 DUF4631: Domain of un 30.0 1.1E+03 0.024 28.9 18.0 85 285-382 358-443 (531)
254 KOG0243 Kinesin-like protein [ 29.7 1.5E+03 0.032 30.2 19.8 95 149-257 408-512 (1041)
255 PF00170 bZIP_1: bZIP transcri 28.5 1.9E+02 0.004 24.9 6.0 35 332-366 28-62 (64)
256 PF06248 Zw10: Centromere/kine 28.3 1.1E+03 0.025 28.5 15.2 34 143-176 5-39 (593)
257 PF04100 Vps53_N: Vps53-like, 27.9 3.8E+02 0.0083 31.1 10.1 19 658-676 346-364 (383)
258 PF05377 FlaC_arch: Flagella a 27.8 72 0.0016 27.9 3.3 39 338-376 1-39 (55)
259 PF06632 XRCC4: DNA double-str 27.7 1.3E+02 0.0027 34.7 6.2 50 328-377 128-177 (342)
260 PF13094 CENP-Q: CENP-Q, a CEN 27.4 3.9E+02 0.0084 26.9 9.0 47 154-200 36-82 (160)
261 PF10498 IFT57: Intra-flagella 27.2 1E+03 0.023 27.6 14.6 127 139-268 185-320 (359)
262 PHA02675 ORF104 fusion protein 26.6 2.2E+02 0.0049 27.0 6.4 47 224-270 33-79 (90)
263 PF08657 DASH_Spc34: DASH comp 26.3 1.5E+02 0.0032 32.8 6.3 29 330-358 187-215 (259)
264 PF10473 CENP-F_leu_zip: Leuci 26.2 7.2E+02 0.016 25.4 14.3 51 150-200 22-72 (140)
265 PF05266 DUF724: Protein of un 26.0 2E+02 0.0044 30.4 6.9 51 149-199 128-178 (190)
266 KOG4603 TBP-1 interacting prot 26.0 1.3E+02 0.0029 31.9 5.4 63 313-377 71-135 (201)
267 PF11500 Cut12: Spindle pole b 25.6 1.2E+02 0.0026 31.3 5.0 55 299-355 81-137 (152)
268 PF10212 TTKRSYEDQ: Predicted 24.8 1.4E+03 0.03 28.2 14.7 26 222-247 310-335 (518)
269 PF05384 DegS: Sensor protein 24.6 8.1E+02 0.018 25.5 14.0 45 156-200 3-47 (159)
270 KOG4302 Microtubule-associated 24.5 1.5E+03 0.033 28.6 15.1 173 169-367 13-197 (660)
271 PF05565 Sipho_Gp157: Siphovir 24.3 5.1E+02 0.011 26.5 9.2 39 228-266 47-85 (162)
272 TIGR03687 pupylate_cterm ubiqu 24.2 67 0.0015 25.5 2.2 18 659-676 8-25 (33)
273 PF13815 Dzip-like_N: Iguana/D 23.8 2.2E+02 0.0048 27.5 6.3 44 331-374 74-117 (118)
274 KOG2129 Uncharacterized conser 23.8 1.2E+03 0.025 28.3 12.8 25 154-178 101-126 (552)
275 PF07106 TBPIP: Tat binding pr 23.7 3.1E+02 0.0067 27.8 7.6 14 186-199 92-105 (169)
276 KOG2129 Uncharacterized conser 23.6 1E+03 0.022 28.7 12.3 43 332-377 160-202 (552)
277 KOG0243 Kinesin-like protein [ 23.4 1.2E+03 0.026 31.0 13.9 55 216-270 399-469 (1041)
278 PF01920 Prefoldin_2: Prefoldi 23.3 5.7E+02 0.012 23.2 9.4 23 172-194 11-33 (106)
279 PF04859 DUF641: Plant protein 23.2 95 0.0021 31.3 3.7 33 527-559 85-117 (131)
280 PF06120 Phage_HK97_TLTM: Tail 23.2 3.7E+02 0.0081 30.6 8.7 134 232-378 38-175 (301)
281 PF06120 Phage_HK97_TLTM: Tail 22.9 2.1E+02 0.0045 32.5 6.7 64 299-364 45-108 (301)
282 PF05073 Baculo_p24: Baculovir 22.9 1.8E+02 0.004 30.9 5.8 94 721-825 85-179 (182)
283 PF06008 Laminin_I: Laminin Do 22.8 9.9E+02 0.022 25.9 17.1 13 330-342 156-168 (264)
284 KOG0804 Cytoplasmic Zn-finger 22.8 1E+03 0.023 28.8 12.3 95 148-265 357-451 (493)
285 PF15254 CCDC14: Coiled-coil d 22.7 1.1E+03 0.023 30.6 12.8 30 342-371 527-556 (861)
286 smart00338 BRLZ basic region l 22.3 2.3E+02 0.005 24.4 5.5 34 332-365 28-61 (65)
287 PRK00846 hypothetical protein; 22.2 2.7E+02 0.0059 25.9 6.1 46 326-371 9-61 (77)
288 PF07106 TBPIP: Tat binding pr 22.0 1.6E+02 0.0034 29.8 5.1 52 326-377 75-128 (169)
289 PF09728 Taxilin: Myosin-like 22.0 1.2E+03 0.026 26.5 18.4 63 300-372 133-195 (309)
290 PF06008 Laminin_I: Laminin Do 22.0 1E+03 0.022 25.8 17.9 75 301-375 155-230 (264)
291 PRK03598 putative efflux pump 21.8 1.1E+03 0.024 26.0 14.9 84 149-237 85-168 (331)
292 KOG4603 TBP-1 interacting prot 21.8 5.5E+02 0.012 27.5 8.9 73 180-270 79-151 (201)
293 COG1382 GimC Prefoldin, chaper 21.7 8.3E+02 0.018 24.5 13.1 39 228-266 70-108 (119)
294 PF04912 Dynamitin: Dynamitin 21.5 6.9E+02 0.015 28.8 10.6 75 177-268 206-280 (388)
295 PF13166 AAA_13: AAA domain 21.4 1.5E+03 0.033 27.6 17.2 177 176-373 268-453 (712)
296 TIGR00103 DNA_YbaB_EbfC DNA-bi 21.2 63 0.0014 30.8 2.0 37 673-709 2-39 (102)
297 PHA03011 hypothetical protein; 20.8 2.6E+02 0.0057 27.4 5.9 43 327-369 75-117 (120)
298 PF12761 End3: Actin cytoskele 20.7 1.1E+03 0.024 25.5 15.2 167 51-263 8-195 (195)
299 COG2433 Uncharacterized conser 20.5 9.1E+02 0.02 30.3 11.5 89 151-263 421-509 (652)
300 PLN03188 kinesin-12 family pro 20.4 8.7E+02 0.019 32.9 12.0 68 186-270 1172-1239(1320)
301 PF05483 SCP-1: Synaptonemal c 20.3 1.9E+03 0.041 28.2 19.6 35 332-366 589-623 (786)
302 PF09744 Jnk-SapK_ap_N: JNK_SA 20.3 9.8E+02 0.021 24.8 12.6 39 148-186 46-84 (158)
303 TIGR02473 flagell_FliJ flagell 20.1 7.6E+02 0.017 23.5 14.8 93 166-262 13-109 (141)
No 1
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=99.91 E-value=1.6e-25 Score=195.76 Aligned_cols=52 Identities=75% Similarity=1.246 Sum_probs=51.4
Q ss_pred CcHHHHHHHHhhhccCChHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhh
Q 043674 1 MEEKVGEMLKIIDDDGDSFAQRAEMYYRKRPELINFVEDSYRSYRALAERYD 52 (891)
Q Consensus 1 md~kvk~mlklieed~dSfa~rAemyy~kRpeLi~~vee~yr~Yr~LAeryd 52 (891)
||+|||+||+||++||||||+||||||+|||+||++||||||+||+||||||
T Consensus 23 md~kvk~mlklieedgdSfakrAEmyy~kRp~Li~~vee~yr~YrsLAerYD 74 (74)
T PF07765_consen 23 MDEKVKAMLKLIEEDGDSFAKRAEMYYKKRPELISLVEEFYRSYRSLAERYD 74 (74)
T ss_pred HHHHHHHHHHHhccCcchHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999999999999998
No 2
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.43 E-value=0.29 Score=63.24 Aligned_cols=102 Identities=14% Similarity=0.178 Sum_probs=73.5
Q ss_pred cccccchHHHHHHhhhhhhhHhhhhcccchHHHhhh--hhhccchHHHHHHHHccccccccccccccccchhhhhhhhhh
Q 043674 716 TKSDARPIYKHLREIQTELTLWLENNEVLKDEVQDR--YTSLCNIQEEVSRVANASASASAKAEDAELSNYQAAKFQGEI 793 (891)
Q Consensus 716 ~kse~~pi~khLREi~tEL~vWlE~nalLk~ELq~R--fsSLC~IQEEIs~al~~~~~~~~~~~~~~ft~YQAAKFQGEV 793 (891)
+.++...+-..++.|+++|.-+=..---|++.|..| -..+=.++.+|...-...++ ..+ +.|+.|.
T Consensus 989 le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~-------~~~-----~~~~~e~ 1056 (1311)
T TIGR00606 989 CEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQ-------MQV-----LQMKQEH 1056 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------ccH-----HHHHHHH
Confidence 444556666788888888888777777788888888 77778888888877666554 122 6677777
Q ss_pred hhhhhhhhhhHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 043674 794 MNMKQENKKIADELHAGLDCVKQLRVEVEKTLAKLD 829 (891)
Q Consensus 794 LNMKQENnKVa~ELQaGLd~V~~Lq~eVek~L~kL~ 829 (891)
-.|..+.+.....-..-+..++.|+.+|...-..|+
T Consensus 1057 ~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~ 1092 (1311)
T TIGR00606 1057 QKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELR 1092 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 777777777776666666677777777766666664
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.02 E-value=0.029 Score=69.32 Aligned_cols=50 Identities=18% Similarity=0.322 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 043674 151 LEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQ 200 (891)
Q Consensus 151 e~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~Lq 200 (891)
..+|..|+..+..++.+-+.+.-.+...-..+..++.++..+......+.
T Consensus 673 ~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~ 722 (1164)
T TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIE 722 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666555555555555555555555555554444443
No 4
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.95 E-value=0.61 Score=61.52 Aligned_cols=224 Identities=16% Similarity=0.150 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCc-ccccHHHHHHHHHHHHHHH
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGT-VIDDNEARTLIAATAVKSC 226 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a-~IED~EARaLmae~a~ksc 226 (891)
..++.+|+.|++.+.++..+-+-...+-.-+.+||-+|++.|-....++..|...+..-. -|-+.+-+.-.....|-.|
T Consensus 657 ~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a 736 (1822)
T KOG4674|consen 657 KKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSA 736 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346667777777777777777777777777888888888888888877777742211000 1111122222223355666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchh----------hhccchhhhhhhccccccccccc
Q 043674 227 QDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDER----------EQEQPWEENENKTTAGSELKADL 296 (891)
Q Consensus 227 ~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~----------eke~~~~qq~le~is~lE~~i~~ 296 (891)
.+.+..|+.....+-.+-+....=-.++-.++.+|-.+...+..+.. +.+...-++|-..|..|+..+.+
T Consensus 737 ~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~ 816 (1822)
T KOG4674|consen 737 NEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQK 816 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665554444444433333222222222222222222111000 11111222444444444444433
Q ss_pred ccCchhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 043674 297 APQGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKES 376 (891)
Q Consensus 297 ae~~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~ 376 (891)
+ ..+++.-...|.++ ....+.++...--.||++-...-++=..++++...+..|..++.+|..+|+..+...-.
T Consensus 817 l---k~klq~~~~~~r~l---~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~ 890 (1822)
T KOG4674|consen 817 L---KKKLQEKSSDLREL---TNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLN 890 (1822)
T ss_pred H---HHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 3 22222222222222 22334455555566788888888888888888888888888888888888888877666
Q ss_pred c
Q 043674 377 L 377 (891)
Q Consensus 377 L 377 (891)
|
T Consensus 891 l 891 (1822)
T KOG4674|consen 891 L 891 (1822)
T ss_pred c
Confidence 5
No 5
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.94 E-value=0.026 Score=74.21 Aligned_cols=172 Identities=23% Similarity=0.229 Sum_probs=94.9
Q ss_pred hhHHHHHHHhHHHHHHhhhhhHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccc------c--ccccccchHHHHHHhhhh
Q 043674 661 ADIDELLEENLEFWLRFSTSVHQIQKYQSTVQDLKAELARLKDKKKQEGSAKQ------R--YTKSDARPIYKHLREIQT 732 (891)
Q Consensus 661 ~dID~lLEENLeFWlRFStS~hqIQkFqt~~~dLq~El~kl~~~~~~eg~~~~------~--~~kse~~pi~khLREi~t 732 (891)
.+|..=-||.-+.|---.-++..+|.==-+=...+++..+++ ++=+|..+. . ....++.--.+++-..-.
T Consensus 1565 r~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~K--Kkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k 1642 (1930)
T KOG0161|consen 1565 RRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSK--KKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLK 1642 (1930)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh--hhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHH
Confidence 334444467777786655555554441112222333333332 222222110 0 122233333345555556
Q ss_pred hhhHhhhhcccchHHHh-------hhhhhccchHHHHHHHHcccc------ccc-c-ccccc-------cccchhhhhhh
Q 043674 733 ELTLWLENNEVLKDEVQ-------DRYTSLCNIQEEVSRVANASA------SAS-A-KAEDA-------ELSNYQAAKFQ 790 (891)
Q Consensus 733 EL~vWlE~nalLk~ELq-------~RfsSLC~IQEEIs~al~~~~------~~~-~-~~~~~-------~ft~YQAAKFQ 790 (891)
+|+.=++..-.-++|+. .|+..|-+=-++....+.... +.+ + ..+.. -+.+-.=-|--
T Consensus 1643 ~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE 1722 (1930)
T KOG0161|consen 1643 ELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLE 1722 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHH
Confidence 66666666666666666 777776655555544432211 000 0 00000 12233334667
Q ss_pred hhhhhhhhhhhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcC
Q 043674 791 GEIMNMKQENKKIADELHAGLDCVKQLRVEVEKTLAKLDEQLRH 834 (891)
Q Consensus 791 GEVLNMKQENnKVa~ELQaGLd~V~~Lq~eVek~L~kL~e~~~l 834 (891)
++|.-++-+---+.+++.++-|++|..+.+..++-..|+.+=+.
T Consensus 1723 ~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~ 1766 (1930)
T KOG0161|consen 1723 AEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQET 1766 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 88999999999999999999999999999999999988866554
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.93 E-value=0.047 Score=67.22 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 043674 150 ALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNL 199 (891)
Q Consensus 150 Ae~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~L 199 (891)
...++..|+..+..++.+-..+...+...-..+..+..++..++.....+
T Consensus 675 l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 724 (1179)
T TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL 724 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666665555555555555555555555555554444444
No 7
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.93 E-value=0.061 Score=56.89 Aligned_cols=54 Identities=31% Similarity=0.279 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQD 201 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqD 201 (891)
..|+.||..|+..|.-|..+=+.+--.++....|+.+++....+.......|..
T Consensus 32 ~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~ 85 (237)
T PF00261_consen 32 EKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLEN 85 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 568888888888888888888888888888888888888877777666666643
No 8
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.88 E-value=0.014 Score=61.65 Aligned_cols=52 Identities=25% Similarity=0.318 Sum_probs=35.0
Q ss_pred hhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 043674 325 VTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKES 376 (891)
Q Consensus 325 V~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~ 376 (891)
...+-++|..|-.++-..|..+..+...|.+|...|+.|...|....+....
T Consensus 171 e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~ 222 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKK 222 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666667777777777888888888887777766555443
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.80 E-value=0.071 Score=65.67 Aligned_cols=8 Identities=0% Similarity=-0.434 Sum_probs=4.2
Q ss_pred cccccccC
Q 043674 643 VKHVKIHC 650 (891)
Q Consensus 643 ~~~~~~~~ 650 (891)
++-+|+|.
T Consensus 1114 ~~~lDE~~ 1121 (1179)
T TIGR02168 1114 FCILDEVD 1121 (1179)
T ss_pred eEEecCcc
Confidence 44566653
No 10
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.72 E-value=0.097 Score=64.86 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=18.8
Q ss_pred hHHHHHHHHhhcHHHHHHhHHHHhh
Q 043674 502 LLEEYTSVLHNYTDVRRKLSVMEKK 526 (891)
Q Consensus 502 LL~EYTsvLrNYKdvk~kL~evEkK 526 (891)
-+.+|..+..-|...+.++.++++.
T Consensus 977 Ai~~~~~~~~~~~~l~~q~~dl~~~ 1001 (1164)
T TIGR02169 977 AIQEYEEVLKRLDELKEKRAKLEEE 1001 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888888888777743
No 11
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.67 E-value=0.074 Score=66.38 Aligned_cols=199 Identities=20% Similarity=0.232 Sum_probs=132.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHH----------HHHHHHHHHHHHHH
Q 043674 165 QTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAA----------TAVKSCQDTLSKLQ 234 (891)
Q Consensus 165 QtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae----------~a~ksc~EtL~kLe 234 (891)
-+=.+...-.-.+-.+.+..|+++|.++++....+.+- ...- +--+.|+++ .+|+.|.+.+.+.|
T Consensus 220 ~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~---e~~~--~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~q 294 (1074)
T KOG0250|consen 220 MESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQL---EDLK--ENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQ 294 (1074)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555666677778888888888777765321 0100 012345554 39999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchh--h---hhh----hcccccccccccc----cCch
Q 043674 235 EKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWE--E---NEN----KTTAGSELKADLA----PQGK 301 (891)
Q Consensus 235 ekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~--q---q~l----e~is~lE~~i~~a----e~~e 301 (891)
++.....+.......++..++.++......++.+.. +.++-.. + +.+ -....++.++.++ .+..
T Consensus 295 ek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~---e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k 371 (1074)
T KOG0250|consen 295 EKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKD---EVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLK 371 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888887777776644 2211110 0 111 1122222232232 2445
Q ss_pred hhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 302 SDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 302 ~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
.++..++..|....+.. ..++-....+.-+|+-.|+.+|-..+.++++|+.|.++++..+..-++++..+
T Consensus 372 ~~~d~l~k~I~~~~~~~------~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i 441 (1074)
T KOG0250|consen 372 KEVDRLEKQIADLEKQT------NNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHI 441 (1074)
T ss_pred HHHHHHHHHHHHHHHHH------HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 55555666666555533 23344558888899999999999889999999999999999999999888655
No 12
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.59 E-value=0.12 Score=59.81 Aligned_cols=158 Identities=12% Similarity=0.156 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhcccccccccccccCch
Q 043674 222 AVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLAPQGK 301 (891)
Q Consensus 222 a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~ae~~e 301 (891)
++...++.|.+|...+....+........+..++..+..+...+..... ....| .|-..++.....+. ...
T Consensus 235 ~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~---~~~Cp---~C~~~~~~~~~~~~---~l~ 305 (562)
T PHA02562 235 EIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEK---GGVCP---TCTQQISEGPDRIT---KIK 305 (562)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCC---CCCCcCCCcHHHHH---HHH
Confidence 4444555555555444444444444555555566666666555444322 11112 45444444422222 223
Q ss_pred hhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcccccCC
Q 043674 302 SDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESLIADS 381 (891)
Q Consensus 302 ~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L~~ds 381 (891)
..+..|+.+++...+.- . .+...-+++.++..++..++..+......+..+..+...++..|..|+.....+
T Consensus 306 d~i~~l~~~l~~l~~~i--~--~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~---- 377 (562)
T PHA02562 306 DKLKELQHSLEKLDTAI--D--ELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDN---- 377 (562)
T ss_pred HHHHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhch----
Confidence 34444555555544432 1 112233356667777777777777777777666666666666666666653322
Q ss_pred ccccchhhHHHHhccCC
Q 043674 382 DATSSADYLSEKLQSGK 398 (891)
Q Consensus 382 ~~~~~l~~ls~kL~~vk 398 (891)
...|..|..+|..+.
T Consensus 378 --~~~l~~l~~~l~~~~ 392 (562)
T PHA02562 378 --AEELAKLQDELDKIV 392 (562)
T ss_pred --HHHHHHHHHHHHHHH
Confidence 223555555555444
No 13
>PRK03918 chromosome segregation protein; Provisional
Probab=96.51 E-value=0.12 Score=63.18 Aligned_cols=49 Identities=24% Similarity=0.355 Sum_probs=33.0
Q ss_pred chhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 043674 324 AVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEG 372 (891)
Q Consensus 324 sV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe 372 (891)
.+..+-.++.++-.+...+...+....+.+..++..+++|...+..|+.
T Consensus 385 ~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~ 433 (880)
T PRK03918 385 TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKK 433 (880)
T ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666677777667777777666667777777777777776666653
No 14
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.43 E-value=0.14 Score=65.84 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=34.6
Q ss_pred CchhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhh
Q 043674 299 QGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRL 370 (891)
Q Consensus 299 ~~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tL 370 (891)
..-..+..+...|..+...+ ..-.+.++...+..+...|-.|+..+..-+..++.|+.+++.++..-+.+
T Consensus 948 ~~~~~~~~~~~~i~~y~~~~--~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l 1017 (1311)
T TIGR00606 948 EKVKNIHGYMKDIENKIQDG--KDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWL 1017 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888888888766 22233444444444444444444444444444444444444444333333
No 15
>PRK02224 chromosome segregation protein; Provisional
Probab=96.34 E-value=0.43 Score=58.62 Aligned_cols=71 Identities=11% Similarity=0.138 Sum_probs=43.5
Q ss_pred chhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 043674 300 GKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEG 372 (891)
Q Consensus 300 ~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe 372 (891)
...++..++..|.+....-+ .-....+.++++.+...+-.++..+....+.+.+|...+..+...+..+++
T Consensus 625 ~~~~l~~~r~~i~~l~~~~~--~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~e~~~~ 695 (880)
T PRK02224 625 RRERLAEKRERKRELEAEFD--EARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEE 695 (880)
T ss_pred HHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666543221 114455666677777777777777766677777777777666666655543
No 16
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.29 E-value=0.15 Score=64.96 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=15.5
Q ss_pred HHHHHHHHhhcHHHHHHhHHHHh
Q 043674 503 LEEYTSVLHNYTDVRRKLSVMEK 525 (891)
Q Consensus 503 L~EYTsvLrNYKdvk~kL~evEk 525 (891)
+++|--+-.-|...+.++.++++
T Consensus 969 iee~e~~~~r~~~l~~~~~dl~~ 991 (1163)
T COG1196 969 IEEYEEVEERYEELKSQREDLEE 991 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777766666654
No 17
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.18 E-value=8.6 Score=52.05 Aligned_cols=207 Identities=16% Similarity=0.194 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHH---HHHHHH
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLI---AATAVK 224 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLm---ae~a~k 224 (891)
++++..+..|.+....+..+-+..+.+.+.-.-+-..+...|..+|.++..|++... |+-|+++.+ ...++.
T Consensus 1283 ee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~le-----ee~e~~~~l~r~lsk~~~ 1357 (1930)
T KOG0161|consen 1283 EEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLE-----EEQEAKNELERKLSKANA 1357 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 668889999999999999999999999999999999999999999999888876644 222345432 223666
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhcccccccccccccCc
Q 043674 225 SCQDTLSKLQEKQEQS----LEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLAPQG 300 (891)
Q Consensus 225 sc~EtL~kLeekq~~s----~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~ae~~ 300 (891)
.|.+...+.+..+... .+.-+...+|+..+.+.++.+......+.. --..+++.++... ...++.
T Consensus 1358 e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek-----~k~~l~~el~d~~------~d~~~~ 1426 (1930)
T KOG0161|consen 1358 ELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEK-----AKNRLQQELEDLQ------LDLERS 1426 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----HHHHHHhHHHHHH------HHHHHH
Confidence 6666666666554432 222333345555566555555555554422 1112223332110 011122
Q ss_pred hhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 301 KSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 301 e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
..-+..|.++++.+-.. +.+.-.+.+.++.-+=.-+.......+.+.+|....+++...+..|+.++..|
T Consensus 1427 ~~~~~~le~k~k~f~k~-------l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l 1496 (1930)
T KOG0161|consen 1427 RAAVAALEKKQKRFEKL-------LAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNL 1496 (1930)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22234455555544331 22222233333333333444444444555555555555555555555544433
No 18
>PRK11637 AmiB activator; Provisional
Probab=96.00 E-value=0.51 Score=53.83 Aligned_cols=54 Identities=19% Similarity=0.178 Sum_probs=39.6
Q ss_pred chhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 324 AVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 324 sV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
...++.....++...-..|+.....++..+.+|+.+..+.+..|..|+.+...|
T Consensus 192 ~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L 245 (428)
T PRK11637 192 KQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRL 245 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777778888888888888888888888887777777777665444
No 19
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.74 E-value=0.51 Score=58.22 Aligned_cols=217 Identities=21% Similarity=0.222 Sum_probs=103.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCc-ccccHHHHHH------HHHHHHHH
Q 043674 153 EIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGT-VIDDNEARTL------IAATAVKS 225 (891)
Q Consensus 153 EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a-~IED~EARaL------mae~a~ks 225 (891)
-+.+.++.|..+|.|+.-..+-...--+.|---|..|+.+|.++.+|.+-+..+. .+...-.|.. ....+.-.
T Consensus 358 ~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~ 437 (775)
T PF10174_consen 358 QLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALET 437 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHH
Confidence 3444444555555555555555555555555555566666666555554443211 0100000100 00112223
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhccccchhhhccc--hhhhh-hhccccccccccccc
Q 043674 226 CQDTLSKLQEKQEQSLEE----AKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQP--WEENE-NKTTAGSELKADLAP 298 (891)
Q Consensus 226 c~EtL~kLeekq~~s~ee----Ak~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~--~~qq~-le~is~lE~~i~~ae 298 (891)
+.+++...+..+....+. .+...+++...+.+++.|+.++..+..+.-++... ..+.. ..-.+..+...+.++
T Consensus 438 lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~ 517 (775)
T PF10174_consen 438 LEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIE 517 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHH
Confidence 333333333222222111 22333455566666666666666665421122211 11111 123344455555566
Q ss_pred CchhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 299 QGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 299 ~~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
++...++..++++..+...-.. +..=-++...|..||..|..--..+.+-+.|+|-|-..|+.+|.+|..+
T Consensus 518 ~l~I~lEk~rek~~kl~~ql~k--------~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~k 588 (775)
T PF10174_consen 518 RLEIELEKKREKHEKLEKQLEK--------LRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDK 588 (775)
T ss_pred HHHHHHHHhhhHHHHHHHHHHH--------HHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6666666666666655442211 0111244556677777777766777777777777777777777776554
No 20
>PRK02224 chromosome segregation protein; Provisional
Probab=95.68 E-value=0.98 Score=55.54 Aligned_cols=13 Identities=15% Similarity=0.112 Sum_probs=7.3
Q ss_pred hhHHHHHHHHhhc
Q 043674 501 ILLEEYTSVLHNY 513 (891)
Q Consensus 501 iLL~EYTsvLrNY 513 (891)
-++++|...+..+
T Consensus 468 ~~~~~~~~~~~~~ 480 (880)
T PRK02224 468 ETIEEDRERVEEL 480 (880)
T ss_pred hhHHHHHHHHHHH
Confidence 3556666655554
No 21
>PRK03918 chromosome segregation protein; Provisional
Probab=95.63 E-value=0.37 Score=58.90 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 226 CQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKL 261 (891)
Q Consensus 226 c~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaL 261 (891)
....+..|..++.....++.....|+...+.++..|
T Consensus 547 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 582 (880)
T PRK03918 547 ELEKLEELKKKLAELEKKLDELEEELAELLKELEEL 582 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444555555555555666666666666555544
No 22
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.59 E-value=0.4 Score=61.29 Aligned_cols=79 Identities=22% Similarity=0.300 Sum_probs=40.5
Q ss_pred CchhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 299 QGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 299 ~~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
+...+++.+..++.+..+.-......+..+..++.++...+..++..+.+....+.+++.+..++...|+.++.....+
T Consensus 825 ~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~ 903 (1163)
T COG1196 825 RLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAEL 903 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666655554433444444444445555555555555555555555555555555555555555444433
No 23
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.42 E-value=0.49 Score=59.06 Aligned_cols=112 Identities=19% Similarity=0.332 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh-----hhhcc--------CcccccHHH
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQ-----DEFGI--------GTVIDDNEA 214 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~Lq-----DEf~~--------~a~IED~EA 214 (891)
..|+.|+...|+.|.++.++=.....+ -.|+-.|..++.-.+-+..=+. ++|+. .-.+++.++
T Consensus 680 ~~~~~~~~~~q~el~~le~eL~~le~~----~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~ 755 (1174)
T KOG0933|consen 680 KQAQKELRAIQKELEALERELKSLEAQ----SQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQ 755 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHH
Confidence 346667777777777766654433222 2345555555544443332221 11110 011222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043674 215 RTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFI 266 (891)
Q Consensus 215 RaLmae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~ 266 (891)
+.--...+++.|.++++.|+.....+.-+- -.|.++++.+++.+++...
T Consensus 756 ~Ike~~~~~k~~~~~i~~lE~~~~d~~~~r---e~rlkdl~keik~~k~~~e 804 (1174)
T KOG0933|consen 756 QIKEKERALKKCEDKISTLEKKMKDAKANR---ERRLKDLEKEIKTAKQRAE 804 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhh---HhHHHHHHHHHHHHHHHHH
Confidence 333334599999999999987654332221 1244555555555555444
No 24
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.28 E-value=0.31 Score=52.61 Aligned_cols=103 Identities=16% Similarity=0.193 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHH
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQ 227 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~ 227 (891)
.+|..|+.++.+.+..++.+.|.+.-|+-+.=..+.++..++..+++...+.. ...+|+.+.
T Consensus 34 ~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~------------------~~~e~~aL~ 95 (239)
T COG1579 34 KKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVK------------------DERELRALN 95 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------------------cHHHHHHHH
Confidence 44666666666777777766666666666666666666666655554443221 123566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043674 228 DTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVN 268 (891)
Q Consensus 228 EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l 268 (891)
-.+..+++++..+..+.....+++...+.++..++..+...
T Consensus 96 ~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~ 136 (239)
T COG1579 96 IEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL 136 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666665544
No 25
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.77 E-value=3.6 Score=48.68 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=55.7
Q ss_pred chhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 300 GKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 300 ~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
++.++..++.+|.-.-.......-.+.+|.-.++++-.-.-..-.+....+..+.+++.+++.....|.++|....+.
T Consensus 342 L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa 419 (522)
T PF05701_consen 342 LEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAA 419 (522)
T ss_pred HHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444443333333567777788888888888888888888999999999999999999998876544
No 26
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.68 E-value=1.8 Score=57.05 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Q 043674 150 ALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDE 202 (891)
Q Consensus 150 Ae~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDE 202 (891)
...|...|=++++.....|..++-.....=.++..++..+.++......|+.+
T Consensus 277 ~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQ 329 (1486)
T PRK04863 277 HANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQD 329 (1486)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666677777777777777777777777777777777777777544
No 27
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.66 E-value=0.95 Score=57.45 Aligned_cols=218 Identities=18% Similarity=0.247 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhchhhhhccCc--ccccHHHHHHHHH-
Q 043674 151 LEEIDKLQKGILGLQTEKEFAKSSYERGY-------EKYWEIEDQITEMQAKVCNLQDEFGIGT--VIDDNEARTLIAA- 220 (891)
Q Consensus 151 e~EI~~LQk~il~LQtEKEa~~lqYqqsl-------eK~~~LE~qIs~~Qe~v~~LqDEf~~~a--~IED~EARaLmae- 220 (891)
-.++.+|.+++..++...+...-+-..+= +++..|+.+++.++-.+..+-.+ -+.. .|=--||+.++..
T Consensus 777 ~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~-~~~l~~~i~~~E~~~~k~~~ 855 (1293)
T KOG0996|consen 777 KESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAEL-IEYLESQIAELEAAVLKKVV 855 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhccC
Confidence 34566666666666666665555533332 23344444444444444444210 0000 0000123323322
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhccccccccccccc
Q 043674 221 --TAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLAP 298 (891)
Q Consensus 221 --~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~ae 298 (891)
.+++..++-|+.|+.+.+.+++.|-. .+|+.....++..+-.+..+.+.+.-++-..+.++|...|..+...|....
T Consensus 856 d~~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~ 934 (1293)
T KOG0996|consen 856 DKKRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSD 934 (1293)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCc
Confidence 26677788899999999999877777 889999999998888877766552001111122244444444444444332
Q ss_pred C----chhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 043674 299 Q----GKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEK 374 (891)
Q Consensus 299 ~----~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k 374 (891)
+ ....++.+...|+...+ .+..|++...-+-.+.+.++..+-...+.+.-++.+...+...+...++.-
T Consensus 935 ~~i~k~q~~l~~le~~~~~~e~-------e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~ 1007 (1293)
T KOG0996|consen 935 RNIAKAQKKLSELEREIEDTEK-------ELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSE 1007 (1293)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 12222233333332222 233344444445555555666666666666666666666666665555443
Q ss_pred ccc
Q 043674 375 ESL 377 (891)
Q Consensus 375 ~~L 377 (891)
..|
T Consensus 1008 ~~l 1010 (1293)
T KOG0996|consen 1008 NEL 1010 (1293)
T ss_pred HHH
Confidence 333
No 28
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.61 E-value=0.53 Score=59.59 Aligned_cols=139 Identities=17% Similarity=0.233 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhccccc
Q 043674 214 ARTLIAATAVKSCQDTLSKLQEKQEQSLEE---AKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGS 290 (891)
Q Consensus 214 ARaLmae~a~ksc~EtL~kLeekq~~s~ee---Ak~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~l 290 (891)
.|.-+....++.|-..+.-|+..+...+.. .....+|..+.++.+.+|++++..++. .++
T Consensus 820 ~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe-----~~~------------ 882 (1293)
T KOG0996|consen 820 NRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQE-----KAA------------ 882 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHH-----hhh------------
Confidence 344566677888888888888776665554 334456667777778888888775543 111
Q ss_pred ccccccccCchhhHHHHHHHHHHHHhhc-CCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q 043674 291 ELKADLAPQGKSDVELSSKKIEDQVAVD-SNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISR 369 (891)
Q Consensus 291 E~~i~~ae~~e~Eve~L~eKIke~~E~~-s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~t 369 (891)
. +..+..|+-+|-+.+-+. -...-.|..+.+++|.|..+|-.+...+.-..-.|....-.+.++...+..
T Consensus 883 --------K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~ 953 (1293)
T KOG0996|consen 883 --------K-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIED 953 (1293)
T ss_pred --------H-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHH
Confidence 0 244555666666655421 001115667777888888888777777665554444444444444444444
Q ss_pred hhhhhcccc
Q 043674 370 LEGEKESLI 378 (891)
Q Consensus 370 LEe~k~~L~ 378 (891)
+++++..|+
T Consensus 954 ~e~e~~~L~ 962 (1293)
T KOG0996|consen 954 TEKELDDLT 962 (1293)
T ss_pred HHHHHHHHH
Confidence 444444443
No 29
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.39 E-value=3.7 Score=49.64 Aligned_cols=197 Identities=15% Similarity=0.215 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHH
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQ 227 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~ 227 (891)
.+.+.|++.||+.|-.|.++-+.+...+..+-..+..++.++..++...+.|+.++.... ++..-+-.-.
T Consensus 324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~----------k~~~lL~d~e 393 (594)
T PF05667_consen 324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKK----------KTVELLPDAE 393 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhcCcH
Confidence 457889999999999999999999999999999999999999999999998865533211 0111233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhccccchhhhccchhhhhhhcccccccccccccCchhh
Q 043674 228 DTLSKLQEKQEQSLEEAKTEQQRIIEAHEKF----IKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLAPQGKSD 303 (891)
Q Consensus 228 EtL~kLeekq~~s~eeAk~e~eRv~~Ae~kl----kaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~ae~~e~E 303 (891)
+-|.+|+.-...+......+..+-...|..+ ..|+....... ...++.+..|..+..++..+ ..+
T Consensus 394 ~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~--------~e~~~~~~~ik~~r~~~k~~---~~e 462 (594)
T PF05667_consen 394 ENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRE--------SESKQKLQEIKELREEIKEI---EEE 462 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc--------hHHHHHHHHHHHHHHHHHHH---HHH
Confidence 5567777777777777777776666666544 44443333111 11223333333332222222 122
Q ss_pred HHHHH---HHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 043674 304 VELSS---KKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGE 373 (891)
Q Consensus 304 ve~L~---eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~ 373 (891)
++.-. .++..-++.-. -.++=.--..+|-+.| ..|-.|.++|.+.-.+|-.||+.|+++.+.
T Consensus 463 ~~~Kee~~~qL~~e~e~~~-k~~~Rs~Yt~RIlEIv-------~NI~KQk~eI~KIl~DTr~lQkeiN~l~gk 527 (594)
T PF05667_consen 463 IRQKEELYKQLVKELEKLP-KDVNRSAYTRRILEIV-------KNIRKQKEEIEKILSDTRELQKEINSLTGK 527 (594)
T ss_pred HHHHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111 12222222111 1122222222333333 445678888888888888888888887764
No 30
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.38 E-value=5.3 Score=43.33 Aligned_cols=46 Identities=22% Similarity=0.357 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 332 IDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 332 iDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
+.++-..+..-..++.+...++.+++..+..|...|.+|...+..|
T Consensus 197 ~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~L 242 (312)
T PF00038_consen 197 LEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASL 242 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhh
Confidence 4444444444444555555555555555555555555555555554
No 31
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.23 E-value=30 Score=46.81 Aligned_cols=219 Identities=16% Similarity=0.156 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHH----------
Q 043674 151 LEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAA---------- 220 (891)
Q Consensus 151 e~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae---------- 220 (891)
-.+|..|+..|..+..+......+|+....+..+|++-|-....++.++.|-.... ++. +.++
T Consensus 216 s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~------~~k-f~~El~~q~kL~eL 288 (1822)
T KOG4674|consen 216 SIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESS------EEK-FEKELSTQKKLNEL 288 (1822)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH------HHH-HHHHHHHHHHHHHH
Confidence 34688888888888888888888888888888888888888888888886543211 011 1111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhh----------hccc
Q 043674 221 --TAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENEN----------KTTA 288 (891)
Q Consensus 221 --~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~l----------e~is 288 (891)
-+...|...++.|+..+.....=+.....|...-.+.++.+++.+.+++.. -++.....+..+ ..++
T Consensus 289 ~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~-~~k~~~~le~~l~~an~~~~~~~~~~ 367 (1822)
T KOG4674|consen 289 WKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEK-LEKKVSRLEGELEDANDSLSATGESS 367 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhHHhhcccc
Confidence 145556666665655544443333333334444334444444444333220 000000111000 0111
Q ss_pred ccccc------cccc------------------cCchhhHHHHHHH--------------HHHHHhhcCCCccchhhHHH
Q 043674 289 GSELK------ADLA------------------PQGKSDVELSSKK--------------IEDQVAVDSNESLAVTQLVE 330 (891)
Q Consensus 289 ~lE~~------i~~a------------------e~~e~Eve~L~eK--------------Ike~~E~~s~ssLsV~e~AE 330 (891)
++... +... +....+++.+.-. |++.+..-..-..++..|-+
T Consensus 368 ~~s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~ 447 (1822)
T KOG4674|consen 368 MVSEKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSE 447 (1822)
T ss_pred hhhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11110 0000 0111222222222 22222222223345666667
Q ss_pred HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 331 KIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 331 kiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
+++..+.++..+|..+-+..++.+++++++-.+...+..|-...-+|
T Consensus 448 el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~L 494 (1822)
T KOG4674|consen 448 ELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNVL 494 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777776665444
No 32
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.17 E-value=4.5 Score=49.13 Aligned_cols=202 Identities=17% Similarity=0.227 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHH
Q 043674 152 EEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLS 231 (891)
Q Consensus 152 ~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~ 231 (891)
.|+..+|..+..|-.+=..+.-.=...+.++.+||..|++++....... .-...+.... ....|.+ ....|...+.
T Consensus 22 ~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~-~~~~pa~pse-~E~~Lq~--E~~~L~kElE 97 (617)
T PF15070_consen 22 EESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP-PPEPPAGPSE-VEQQLQA--EAEHLRKELE 97 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-CccccccchH-HHHHHHH--HHHHHHHHHH
Confidence 4555556666555555555555566778889999999999887776653 1111222110 0123333 3344666666
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhcccccccccccc----cCc
Q 043674 232 KLQEKQEQSLEEA-------KTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLA----PQG 300 (891)
Q Consensus 232 kLeekq~~s~eeA-------k~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~a----e~~ 300 (891)
.|..++..-.++- ..-.+|+.+.+..+..+.... +...+-|+.+.+-..-++.| .+.
T Consensus 98 ~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~------------~D~~kLLe~lqsdk~t~SRAlsQN~eL 165 (617)
T PF15070_consen 98 SLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQ------------EDRQKLLEQLQSDKATASRALSQNREL 165 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhhhcccchHHHHHHHhHHHH
Confidence 6665544322221 222344444444444443321 11223333333333333333 233
Q ss_pred hhhHHHHHHHHHHHHhhcCCCccc---------hhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 043674 301 KSDVELSSKKIEDQVAVDSNESLA---------VTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLE 371 (891)
Q Consensus 301 e~Eve~L~eKIke~~E~~s~ssLs---------V~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLE 371 (891)
+..+..|....-.+...+ ..|+ ..+|+.++-++-+++=+|...|-.....+.+|....+.+-.+|+-..
T Consensus 166 K~QL~Elq~~Fv~ltne~--~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~ 243 (617)
T PF15070_consen 166 KEQLAELQDAFVKLTNEN--MELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYV 243 (617)
T ss_pred HHHHHHHHHHHHHHHHhh--hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443333322 2221 23777778888888888888888888888888888777777777553
No 33
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.87 E-value=1.5 Score=49.19 Aligned_cols=198 Identities=19% Similarity=0.203 Sum_probs=112.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHH
Q 043674 154 IDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKL 233 (891)
Q Consensus 154 I~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kL 233 (891)
+..|-++|..-|.|++-.++-+++--+||+.|.+....+.-.+-+..|- . | .....-.++-..|...
T Consensus 11 L~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~----~-~--------~~~~~~~~La~lL~~s 77 (319)
T PF09789_consen 11 LLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDP----S-I--------PPEKENKNLAQLLSES 77 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCc----c-C--------CcccchhhHHHHHHHH
Confidence 5688899999999999999999999999999999987766433322110 0 0 0001222223333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhcccccccccccccCchhhHHHHHHHHHH
Q 043674 234 QEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLAPQGKSDVELSSKKIED 313 (891)
Q Consensus 234 eekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~ae~~e~Eve~L~eKIke 313 (891)
.++-.....+...+.+|+.+|...++.|+..+.+... ..... .-| +....=+.-|..++.....++.|...+..
T Consensus 78 re~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~---~~~~~--~~~-~~~~ere~lV~qLEk~~~q~~qLe~d~qs 151 (319)
T PF09789_consen 78 REQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRV---GDEGI--GAR-HFPHEREDLVEQLEKLREQIEQLERDLQS 151 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhh---hhccc--ccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555555555555555554433 11000 000 00011111122223334444444444444
Q ss_pred HHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHH-------HHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 314 QVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTA-------LVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 314 ~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta-------~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
...+. .+|.. -.|..-+|+--|=.+++..-. .|+-|..|+-=|+++|..+++++..+
T Consensus 152 ~lDEk--eEl~~-----ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~ 215 (319)
T PF09789_consen 152 LLDEK--EELVT-----ERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELL 215 (319)
T ss_pred HHHHH--HHHHH-----HHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 32322 266666777766666654433 49999999999999999999998877
No 34
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.49 E-value=3 Score=52.87 Aligned_cols=174 Identities=19% Similarity=0.247 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 182 YWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKL 261 (891)
Q Consensus 182 ~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaL 261 (891)
|.+++..|.+.|+.+..|+++.. ...........++...++++.....+...-.+.++.|+.-+.++
T Consensus 283 l~~~~~~i~~~qek~~~l~~ki~-------------~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~ 349 (1074)
T KOG0250|consen 283 LNNQEEEIKKKQEKVDTLQEKIE-------------EKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDL 349 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 34555566666666666653311 22233444444555555555555555656666666666666666
Q ss_pred HHhhhccccchhhhccc------hhhhhhhccccccccc-ccc----cCchhhHHHHHHHHHHHHhhcCCCccchhhHHH
Q 043674 262 RNRFIVNQTDEREQEQP------WEENENKTTAGSELKA-DLA----PQGKSDVELSSKKIEDQVAVDSNESLAVTQLVE 330 (891)
Q Consensus 262 K~e~~~l~~~~~eke~~------~~qq~le~is~lE~~i-~~a----e~~e~Eve~L~eKIke~~E~~s~ssLsV~e~AE 330 (891)
+.++..+...-++.... .+..|-..|..++... -.+ .+.+.+++-|...++.+.+ -+..+-+
T Consensus 350 ~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~-------~~~~L~~ 422 (1074)
T KOG0250|consen 350 RREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE-------QINSLRE 422 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 66555443310011100 1112223444443332 111 1233444444444444433 4455667
Q ss_pred HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 043674 331 KIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKE 375 (891)
Q Consensus 331 kiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~ 375 (891)
++++|.+++-..+.+..+-...|..|+.-|..-..+|+.|...+.
T Consensus 423 e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~ 467 (1074)
T KOG0250|consen 423 ELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKT 467 (1074)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 789999999999999888888899999999888888888886654
No 35
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.39 E-value=1.8 Score=51.56 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 330 EKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 330 EkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
.++.+++..+-..+......++++..|+.++-.++.+|...+.....|
T Consensus 262 ~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L 309 (546)
T PF07888_consen 262 QRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELL 309 (546)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666777777777777777777776665555
No 36
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.20 E-value=4.7 Score=48.14 Aligned_cols=211 Identities=16% Similarity=0.212 Sum_probs=120.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHhhchhhhhccCcccccH-----HHHHH
Q 043674 147 KEEALEEIDKLQKGILGLQTEKEFAKSSYERG---Y-EKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDN-----EARTL 217 (891)
Q Consensus 147 k~eAe~EI~~LQk~il~LQtEKEa~~lqYqqs---l-eK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~-----EARaL 217 (891)
-.+|..-+..|+..+..|..-=+.+=--|..| + ..+.+|..-..+|.++==.| +.++....|..= ++..+
T Consensus 193 ~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~-~~~~i~~~i~~l~~~i~~~~~~ 271 (569)
T PRK04778 193 YVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHL-DHLDIEKEIQDLKEQIDENLAL 271 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCC-CCCChHHHHHHHHHHHHHHHHH
Confidence 46677788888888888876666553333333 3 45556665555555433333 111111111100 11112
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhh
Q 043674 218 IAATAVKSCQDTLSKLQEKQ--------------EQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENE 283 (891)
Q Consensus 218 mae~a~ksc~EtL~kLeekq--------------~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~ 283 (891)
...+.+..+.+.+..+++++ .............+..+++....|+.++.++..+ |.
T Consensus 272 l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s--------Y~-- 341 (569)
T PRK04778 272 LEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS--------YT-- 341 (569)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc--------cc--
Confidence 22223333344444444443 3344444444455555555555555555544330 00
Q ss_pred hhcccccccccccccCchhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHH
Q 043674 284 NKTTAGSELKADLAPQGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQL 363 (891)
Q Consensus 284 le~is~lE~~i~~ae~~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL 363 (891)
++ +.++........++..+...++...+.-........++-+.++++..++-.++.....-...|..|+.+..+.
T Consensus 342 ---l~--~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eA 416 (569)
T PRK04778 342 ---LN--ESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEA 416 (569)
T ss_pred ---cC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 2223334455666777777777766665556667888888899999999999998888888888888888888
Q ss_pred HHHHhhhhhh
Q 043674 364 EGHISRLEGE 373 (891)
Q Consensus 364 ~~kL~tLEe~ 373 (891)
..+|..+...
T Consensus 417 r~kL~~~~~~ 426 (569)
T PRK04778 417 REKLERYRNK 426 (569)
T ss_pred HHHHHHHHHH
Confidence 8777777654
No 37
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=93.18 E-value=3 Score=51.33 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH------HHHHHHHHHHhhhccccchhhhccc---hhhh
Q 043674 221 TAVKSCQDTLSKLQEKQE---------QSLEEAKTEQQRIIE------AHEKFIKLRNRFIVNQTDEREQEQP---WEEN 282 (891)
Q Consensus 221 ~a~ksc~EtL~kLeekq~---------~s~eeAk~e~eRv~~------Ae~klkaLK~e~~~l~~~~~eke~~---~~qq 282 (891)
-.|-++++++..|.+... .+.+=-.+.++|+.+ .++++++++-++.+... ..-.. .++.
T Consensus 528 ~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~~~~~kek~ea~~aev~~~g~---s~~~~~~~~lke 604 (762)
T PLN03229 528 PNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSGA---SSGDELDDDLKE 604 (762)
T ss_pred cccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc---cccCCCCHHHHH
Confidence 367788888888887765 233445678899999 99999999998887544 11111 1111
Q ss_pred hhh------------cccccc--------ccccccc-----CchhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHH
Q 043674 283 ENK------------TTAGSE--------LKADLAP-----QGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVD 337 (891)
Q Consensus 283 ~le------------~is~lE--------~~i~~ae-----~~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~ 337 (891)
.++ .+.++. .++..+. ....+|+.|.+.|++.++.- +...++-+||.+|--
T Consensus 605 ki~~~~~Ei~~eie~v~~S~gL~~~~~~k~e~a~~~~~p~~~~k~KIe~L~~eIkkkIe~a----v~ss~LK~k~E~Lk~ 680 (762)
T PLN03229 605 KVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIESLNEEINKKIERV----IRSSDLKSKIELLKL 680 (762)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhhhhhhhhhcccccCCChhhHHHHHHHHHHHHHHHHHH----hcchhHHHHHHHHHH
Confidence 110 111111 1111111 33678888888888888843 456677788877753
No 38
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.18 E-value=8.6 Score=42.96 Aligned_cols=208 Identities=19% Similarity=0.234 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHH
Q 043674 150 ALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDT 229 (891)
Q Consensus 150 Ae~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~Et 229 (891)
...++..+++....++-|++.+...+..+..--..||+---++|.....|.+|.-..+.. +.+.|.-+ -...+.+
T Consensus 41 ~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~e-ee~kR~el----~~kFq~~ 115 (309)
T PF09728_consen 41 LQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRARE-EEEKRKEL----SEKFQAT 115 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHH
Confidence 556777888888889999999999999999999999999999999999998774433222 22333332 3456677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhcccccccccccc---------cCc
Q 043674 230 LSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLA---------PQG 300 (891)
Q Consensus 230 L~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~a---------e~~ 300 (891)
|..++..++.-........+--...+.+++.|-..+..-.. . +. .+-..-.|+..+..| .+.
T Consensus 116 L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~-------~-~~-~~~k~keLE~Ql~~AKl~q~~~~~~~e 186 (309)
T PF09728_consen 116 LKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREE-------H-FE-KLLKQKELEVQLAEAKLEQQQEEAEQE 186 (309)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-HH-HHhhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 77777776655555444555556677777777665551110 1 10 111111222222222 122
Q ss_pred hhhHHHHHH-------HHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 043674 301 KSDVELSSK-------KIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGE 373 (891)
Q Consensus 301 e~Eve~L~e-------KIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~ 373 (891)
......+.+ .+..+.+ +-.+|-.++.--++|.-.++..++..+......+.|++....+++.||.+
T Consensus 187 ~~k~~~~~~~~l~~~~~~~~~~~-------~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE 259 (309)
T PF09728_consen 187 KEKAKQEKEILLEEAAQVQTLKE-------TEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKE 259 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233333 3333333 33445566777788888888899999999999999999999999999999
Q ss_pred hcccc
Q 043674 374 KESLI 378 (891)
Q Consensus 374 k~~L~ 378 (891)
+..+.
T Consensus 260 ~~~~k 264 (309)
T PF09728_consen 260 NQTWK 264 (309)
T ss_pred HHHHH
Confidence 88773
No 39
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=92.88 E-value=2.3 Score=52.78 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=11.8
Q ss_pred HHHHhhhhhhhHhhhhcccch
Q 043674 725 KHLREIQTELTLWLENNEVLK 745 (891)
Q Consensus 725 khLREi~tEL~vWlE~nalLk 745 (891)
.||+-++.|+.--||...=||
T Consensus 699 ~~L~~le~Errk~lEE~l~mK 719 (775)
T PF10174_consen 699 QELNALEAERRKQLEEVLEMK 719 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 555555555555555555555
No 40
>PRK11637 AmiB activator; Provisional
Probab=92.86 E-value=13 Score=42.81 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=20.2
Q ss_pred HHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 043674 338 KVVNLESAVSSQTALVKTLRSETDQLEGHISRLE 371 (891)
Q Consensus 338 KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLE 371 (891)
.+..|+.......+.+..|+.+...|...|..++
T Consensus 220 ~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 220 TLTGLESSLQKDQQQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666665554
No 41
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=92.84 E-value=0.03 Score=67.60 Aligned_cols=50 Identities=30% Similarity=0.417 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Q 043674 329 VEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESLI 378 (891)
Q Consensus 329 AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L~ 378 (891)
..+++.+=..|..|+......+..+++|..++..|..++..|+.+++.|+
T Consensus 362 ~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~ 411 (713)
T PF05622_consen 362 KSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQ 411 (713)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777788888888777788888888888888888887777664
No 42
>PRK01156 chromosome segregation protein; Provisional
Probab=92.60 E-value=5 Score=49.82 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHH
Q 043674 332 IDELVDKVVNLESAVSSQTALVKTLRSETDQLEG 365 (891)
Q Consensus 332 iDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~ 365 (891)
|.++-.++-.|...+..-...+..|+..+++|..
T Consensus 411 ~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~ 444 (895)
T PRK01156 411 LNEINVKLQDISSKVSSLNQRIRALRENLDELSR 444 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555554444444444445544444443
No 43
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=92.30 E-value=12 Score=45.10 Aligned_cols=105 Identities=18% Similarity=0.171 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHH
Q 043674 152 EEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLS 231 (891)
Q Consensus 152 ~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~ 231 (891)
..+...+++...|..+...+.-+..+-=.++..|+.++...+++...|+.....-. ...-........+.....
T Consensus 143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~------~~~e~l~~E~~~L~~q~~ 216 (546)
T PF07888_consen 143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELT------ESSEELKEERESLKEQLA 216 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555566666777777777777777777754422110 111112234445555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 232 KLQEKQEQSLEEAKTEQQRIIEAHEKFIKLR 262 (891)
Q Consensus 232 kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK 262 (891)
.+..++....++.....++..+.+..+..++
T Consensus 217 e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk 247 (546)
T PF07888_consen 217 EARQRIRELEEDIKTLTQKEKEQEKELDKLK 247 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666655544444444
No 44
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.14 E-value=37 Score=43.17 Aligned_cols=117 Identities=16% Similarity=0.144 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhcccccccccccccCchhhHHHHHHHHHHH
Q 043674 235 EKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLAPQGKSDVELSSKKIEDQ 314 (891)
Q Consensus 235 ekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~ae~~e~Eve~L~eKIke~ 314 (891)
++-+..+.+.-...+|+.+.+..++-||.+......+ -.-...|+ +.+.++.-..|++-+-.+
T Consensus 325 ERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~--~~~~ss~q---------------fkqlEqqN~rLKdalVrL 387 (1243)
T KOG0971|consen 325 ERAESLQQEVEALKERVDELETDLEILKAEMEEKGSD--GQAASSYQ---------------FKQLEQQNARLKDALVRL 387 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcccchHH---------------HHHHHHHHHHHHHHHHHH
Confidence 4455556666666777777777777777666533220 00001121 112222223333333333
Q ss_pred HhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 043674 315 VAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKE 375 (891)
Q Consensus 315 ~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~ 375 (891)
-.-. . +-+. -++-++.-.=.+-++++.---.-+||..++|....+|-.|.++-.
T Consensus 388 RDls--A--~ek~---d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 388 RDLS--A--SEKQ---DHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred Hhcc--h--HHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222 1 1111 123333333333334444444556788888888888887777644
No 45
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.94 E-value=14 Score=40.21 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 043674 149 EALEEIDKLQKGILGLQTEKEFAKSSYE 176 (891)
Q Consensus 149 eAe~EI~~LQk~il~LQtEKEa~~lqYq 176 (891)
.-+.||..|+..|..+..||--+.++..
T Consensus 51 ~ye~el~~lr~~id~~~~eka~l~~e~~ 78 (312)
T PF00038_consen 51 MYEEELRELRRQIDDLSKEKARLELEID 78 (312)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHhHHhhhhHHHHhhHHhhhhh
Confidence 3455666666666666655544443333
No 46
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=91.89 E-value=12 Score=45.49 Aligned_cols=105 Identities=16% Similarity=0.215 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHH
Q 043674 150 ALEEIDKLQKGILGLQTEKEFAKSSYERGY-EKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQD 228 (891)
Q Consensus 150 Ae~EI~~LQk~il~LQtEKEa~~lqYqqsl-eK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~E 228 (891)
++..|...++.+-.-++|+++.+.--++.+ +++..+|+-|+.||.....-+.+. .- .-....+
T Consensus 165 ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el-------------~~---~~s~~de 228 (629)
T KOG0963|consen 165 IENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNEL-------------FD---LKSKYDE 228 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-------------HH---HHHhhhh
Confidence 344455566666666677777666555444 456666666666665544443221 11 1111244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 043674 229 TLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQT 270 (891)
Q Consensus 229 tL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~ 270 (891)
.+.-..+++...-.+....+.||-.|+.++..|++++...+.
T Consensus 229 e~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~ 270 (629)
T KOG0963|consen 229 EVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANS 270 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 555666677777777778889999999999999999998877
No 47
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=91.83 E-value=2.7 Score=51.68 Aligned_cols=53 Identities=26% Similarity=0.362 Sum_probs=43.9
Q ss_pred HH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 043674 148 EE-ALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQ 200 (891)
Q Consensus 148 ~e-Ae~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~Lq 200 (891)
++ =..||++|+..|+.+..||-......+-+-.-+..-...+++.|+.+++|-
T Consensus 260 SEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~ 313 (717)
T PF09730_consen 260 SELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLT 313 (717)
T ss_pred hhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 457999999999999999999988888777777777777788888887773
No 48
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=91.64 E-value=10 Score=49.04 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHH
Q 043674 329 VEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEG 365 (891)
Q Consensus 329 AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~ 365 (891)
..+..++.+.+..++..+++-++-++.+..++-.++.
T Consensus 615 ~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 615 RRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 3445566666666666666666666555555544444
No 49
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.47 E-value=11 Score=47.74 Aligned_cols=207 Identities=17% Similarity=0.221 Sum_probs=114.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHH----HHHHHHHH
Q 043674 153 EIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAA----TAVKSCQD 228 (891)
Q Consensus 153 EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae----~a~ksc~E 228 (891)
+|..|...|..|-.||+.+...|...+.+.-.||-+|..+|.++.+-..-. -.+|..- -....-+.
T Consensus 273 ~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r----------~~~l~~l~~~~~ki~e~~~ 342 (1200)
T KOG0964|consen 273 EIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQR----------NLALHVLQKVKDKIEEKKD 342 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhh----------hhHHHHHHHHHHHHHHHHH
Confidence 444444555566679999999999999999999999999988776642111 1222222 24455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcc--chhhhhhh----cccccccccccccCchh
Q 043674 229 TLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQ--PWEENENK----TTAGSELKADLAPQGKS 302 (891)
Q Consensus 229 tL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~--~~~qq~le----~is~lE~~i~~ae~~e~ 302 (891)
+|++.+-+.....++......|+..++.+...|=..-++--.= .-++. -+....+. .|.+.-... .....
T Consensus 343 EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqF-ssk~eRDkwir~ei~~l~~~i~~~ke~e---~~lq~ 418 (1200)
T KOG0964|consen 343 ELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQF-SSKEERDKWIRSEIEKLKRGINDTKEQE---NILQK 418 (1200)
T ss_pred HHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccc-CcHHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHH
Confidence 7777777888888899999999999988887774332221000 00000 01111111 111111000 11223
Q ss_pred hHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 043674 303 DVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGE 373 (891)
Q Consensus 303 Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~ 373 (891)
|+..+...+++..+.--..+.+.-+.-.+++++-.+...+-......+.--+-|=.|-..|+..|.+++++
T Consensus 419 e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~d 489 (1200)
T KOG0964|consen 419 EIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEED 489 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333322233344456666777777777766666665555554544444455555444443
No 50
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.20 E-value=12 Score=39.37 Aligned_cols=108 Identities=14% Similarity=0.171 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHH
Q 043674 151 LEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTL 230 (891)
Q Consensus 151 e~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL 230 (891)
..=|..|++.|..+..--+...-.-.........|-.-+..++.++..|+-... ..-+....+......+
T Consensus 26 L~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~----------~y~kdK~~L~~~k~rl 95 (201)
T PF13851_consen 26 LELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLK----------NYEKDKQSLQNLKARL 95 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 345778888888777322222111122222233344444445555555432211 1113445777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043674 231 SKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVN 268 (891)
Q Consensus 231 ~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l 268 (891)
..+++++....-+..++.+|+...+.+-..|...|...
T Consensus 96 ~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 96 KELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888899999999999999999999888744
No 51
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.19 E-value=8 Score=46.22 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhhhHHHhhccccccccCC
Q 043674 42 RSYRALAERYDHLSKELQSANRTIATVFP 70 (891)
Q Consensus 42 r~Yr~LAeryd~~~~el~~~~~~~~~~~p 70 (891)
..|..|-++|..+...|...++....++|
T Consensus 140 ~~v~~l~~~y~~~rk~ll~~~~~~G~a~~ 168 (569)
T PRK04778 140 EEVEQLKDLYRELRKSLLANRFSFGPALD 168 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccccchHH
Confidence 35667777888887777666666554444
No 52
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.05 E-value=10 Score=48.19 Aligned_cols=225 Identities=13% Similarity=0.142 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----hhhhhccCc-ccccHHHHHHHHHHHHH
Q 043674 150 ALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCN----LQDEFGIGT-VIDDNEARTLIAATAVK 224 (891)
Q Consensus 150 Ae~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~----LqDEf~~~a-~IED~EARaLmae~a~k 224 (891)
-..++..+.+.+-.++.+=..-.-.|-+|-++|+.||+.+.++-.+-++ |.-++.... -++....+.=+.+..|.
T Consensus 739 ~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e 818 (1174)
T KOG0933|consen 739 LLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYE 818 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457777778888888777777788888888888888877665433222 211111000 00000001111122333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHhhhccccchhhh--ccchhh
Q 043674 225 SCQDTLSKLQEKQEQSLEEAKTE---------------------QQRIIEAHEKFIKLRNRFIVNQTDEREQ--EQPWEE 281 (891)
Q Consensus 225 sc~EtL~kLeekq~~s~eeAk~e---------------------~eRv~~Ae~klkaLK~e~~~l~~~~~ek--e~~~~q 281 (891)
-++.++..|+..+..+....... ..-+..+..+++..+..+-..+. +- -.+..+
T Consensus 819 ~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt---~i~~~~~~~e 895 (1174)
T KOG0933|consen 819 RLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDT---EISGLLTSQE 895 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhH---HHhhhhhHHH
Confidence 33333333333332222222222 22223333333333333222221 00 011223
Q ss_pred hhhhccccccccccccc----CchhhHHHHHHHHHHHHhh-----------------cCCCccchhhHHHHHHHHHHHHH
Q 043674 282 NENKTTAGSELKADLAP----QGKSDVELSSKKIEDQVAV-----------------DSNESLAVTQLVEKIDELVDKVV 340 (891)
Q Consensus 282 q~le~is~lE~~i~~ae----~~e~Eve~L~eKIke~~E~-----------------~s~ssLsV~e~AEkiDeLV~KVi 340 (891)
.|+..+++++.++...+ ..+.+-...+.+|..+.+. -+-.+-.+.+--+++.+|.++..
T Consensus 896 ~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~ 975 (1174)
T KOG0933|consen 896 KCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKE 975 (1174)
T ss_pred HHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHH
Confidence 66666666554433331 2222222222222222221 11122345556678889999999
Q ss_pred HhHHHhhh-hHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 341 NLESAVSS-QTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 341 sLE~~vSs-Qta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
.||..|-- .-..++|--....+|.++.+++|.||..+
T Consensus 976 ~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI 1013 (1174)
T KOG0933|consen 976 KLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKI 1013 (1174)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99988854 45788899999999999999999998776
No 53
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=91.05 E-value=21 Score=44.20 Aligned_cols=207 Identities=15% Similarity=0.110 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHhhhh-hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHH--HHHH
Q 043674 149 EALEEIDKLQKGILGLQT-EKEFAK-SSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAA--TAVK 224 (891)
Q Consensus 149 eAe~EI~~LQk~il~LQt-EKEa~~-lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae--~a~k 224 (891)
+|..|+..|-..+.++.. |+.-.. ..-.-+.-|+...+.++.++|....++. + -.+.|.. .||-
T Consensus 397 ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k------~------ll~e~~t~gsA~e 464 (698)
T KOG0978|consen 397 KARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFK------C------LLSEMETIGSAFE 464 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHH------H------HHHHHHHHHHHHH
Confidence 678888888888888773 333333 4677777788888888888887776663 0 1222333 3888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccch--hhhhhhccccccccccccc----
Q 043674 225 SCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPW--EENENKTTAGSELKADLAP---- 298 (891)
Q Consensus 225 sc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~--~qq~le~is~lE~~i~~ae---- 298 (891)
..++.+.+|-.+........--.-.--..+..+.+.|+.+...+.. +.-... ...-...|..++.+....+
T Consensus 465 d~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~---~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~ 541 (698)
T KOG0978|consen 465 DMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEE---QILTLKASVDKLELKIGKLEEQERGLTSNES 541 (698)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 8888888877665554443332222223455555555555554433 111110 0011112222322222221
Q ss_pred CchhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 299 QGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 299 ~~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
....++..+...|..+-- ++.|++...+.|--.+-..+..+-.-+.++.-+..+++.+..+.+-||++++.|
T Consensus 542 ~l~~el~~~~~~le~~kk-------~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L 613 (698)
T KOG0978|consen 542 KLIKELTTLTQSLEMLKK-------KAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERL 613 (698)
T ss_pred hhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222222222211 445555556666666666666666666666666777777777777777776554
No 54
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=90.99 E-value=15 Score=43.77 Aligned_cols=57 Identities=18% Similarity=0.279 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhc
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFG 204 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~ 204 (891)
.-+..|+.+|+..+..+-.+|..+..+.+.+..........+..+..++..|++...
T Consensus 133 ~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~ 189 (522)
T PF05701_consen 133 DSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLE 189 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346679999999999999999999999999999999999999999998888876654
No 55
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=90.44 E-value=4.6 Score=51.00 Aligned_cols=163 Identities=16% Similarity=0.120 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccc--hhh-hhhhcccccccccccccCchhhHHHHHH
Q 043674 233 LQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQP--WEE-NENKTTAGSELKADLAPQGKSDVELSSK 309 (891)
Q Consensus 233 Leekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~--~~q-q~le~is~lE~~i~~ae~~e~Eve~L~e 309 (891)
|..+.+..++.-..+.++..+.+...+.|+-+..++.. +-+.. .+. |.++ -.-+...++...|...+...+..
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~---e~~t~~~s~~rq~~e-~e~~~q~ls~~~Q~~~et~el~~ 488 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLE---ETSTVTRSLSRQSLE-NEELDQLLSLQDQLEAETEELLN 488 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666666665543 11111 000 1110 00011223444566777777777
Q ss_pred HHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhh-------hHHHHHHHHHHHHHHHHHHhhhhh--hhcccccC
Q 043674 310 KIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSS-------QTALVKTLRSETDQLEGHISRLEG--EKESLIAD 380 (891)
Q Consensus 310 KIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSs-------Qta~i~RLr~E~deL~~kL~tLEe--~k~~L~~d 380 (891)
+|+.....=-++-+-..-++..++++.+-+-.+..-+.. -.+.+.-|..|+..|..+|++|-. ++-++.++
T Consensus 489 ~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq 568 (1195)
T KOG4643|consen 489 QIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQ 568 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 788777744344444444555555555544444333322 233444566788888899998887 77777788
Q ss_pred Ccc-----ccchhhHHHHhccCCc
Q 043674 381 SDA-----TSSADYLSEKLQSGKI 399 (891)
Q Consensus 381 s~~-----~~~l~~ls~kL~~vk~ 399 (891)
.++ +..++.+-.+|.++..
T Consensus 569 ~~n~lE~~~~elkk~idaL~alrr 592 (1195)
T KOG4643|consen 569 NNNDLELIHNELKKYIDALNALRR 592 (1195)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 887 6666666666665553
No 56
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=90.34 E-value=6.8 Score=48.76 Aligned_cols=168 Identities=17% Similarity=0.233 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHH
Q 043674 152 EEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLS 231 (891)
Q Consensus 152 ~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~ 231 (891)
.+...|+..+-.+..+|+-+-..+..|-..+..+..++.++...+..|+-+.. .-..-.-+++.+++.-.+...
T Consensus 589 ~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~------~~keS~s~~E~ql~~~~e~~e 662 (769)
T PF05911_consen 589 SEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELE------SAKESNSLAETQLKAMKESYE 662 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 35567889999999999999998888888888888888888888888875533 111223345567777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhcccccccccccccCchhhHHHHHHHH
Q 043674 232 KLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLAPQGKSDVELSSKKI 311 (891)
Q Consensus 232 kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~ae~~e~Eve~L~eKI 311 (891)
.|+-+...+..++.....++..++.++..=|.-+..+.. +|.+ |+.++....... .+..+.
T Consensus 663 ~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~-----------kc~~----Le~el~r~~~~~-~~~~~~--- 723 (769)
T PF05911_consen 663 SLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEA-----------KCRE----LEEELERMKKEE-SLQQLA--- 723 (769)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhh-----------HHHH----HHHHHHhhhccc-chhhcc---
Confidence 888888888888888888888877777776655442222 3432 222222221110 011110
Q ss_pred HHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHh
Q 043674 312 EDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAV 346 (891)
Q Consensus 312 ke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~v 346 (891)
.+-....-...|+++ |+|.-+|..+|.+|-.-+
T Consensus 724 ~~~~k~kqe~EiaaA--A~KLAECQeTI~sLGkQL 756 (769)
T PF05911_consen 724 NEDKKIKQEKEIAAA--AEKLAECQETIASLGKQL 756 (769)
T ss_pred ccccccchHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 000001111234444 889999999999986543
No 57
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=90.11 E-value=15 Score=39.18 Aligned_cols=120 Identities=17% Similarity=0.124 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hchhhh-hccCcccccHHHHHHHHH--
Q 043674 149 EALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKV-----CNLQDE-FGIGTVIDDNEARTLIAA-- 220 (891)
Q Consensus 149 eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v-----~~LqDE-f~~~a~IED~EARaLmae-- 220 (891)
.|+++|.+|...|..|+-|-+-.--.|..+++|+.+.|..-.+.---. ..++|+ ......+.-.||+.+-..
T Consensus 1 ~ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~ad 80 (205)
T KOG1003|consen 1 KAEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKAD 80 (205)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999988876543221111 112222 111111111122222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043674 221 TAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVN 268 (891)
Q Consensus 221 ~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l 268 (891)
+-|.----.|+-++-.++++.+-|.....++...++.+..+.+.+..+
T Consensus 81 rK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l 128 (205)
T KOG1003|consen 81 RKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSL 128 (205)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 122223334555667777777777777777777777777776665544
No 58
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.04 E-value=3.3 Score=42.75 Aligned_cols=84 Identities=23% Similarity=0.238 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHH
Q 043674 150 ALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDT 229 (891)
Q Consensus 150 Ae~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~Et 229 (891)
+..++..|.+.+...+..-.........--.++.+++.+|.+.+.-+.-|+|| |..++-.
T Consensus 100 ~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE--------------------~~~L~l~ 159 (194)
T PF08614_consen 100 LNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDE--------------------LQALQLQ 159 (194)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHH
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHH
Confidence 44444455444444444444334444444456667777777666666666665 3344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 230 LSKLQEKQEQSLEEAKTEQQRIIE 253 (891)
Q Consensus 230 L~kLeekq~~s~eeAk~e~eRv~~ 253 (891)
+..|+++......|-+.+.+|...
T Consensus 160 ~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 160 LNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777777777777777654
No 59
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=89.90 E-value=27 Score=36.38 Aligned_cols=99 Identities=11% Similarity=0.136 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 171 AKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQR 250 (891)
Q Consensus 171 ~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~eeAk~e~eR 250 (891)
+.-+.-..++....++.++..++..+..+++... -|.=-.+|.-+-.+......|...+..|+..+.........+...
T Consensus 42 a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~-~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~ 120 (221)
T PF04012_consen 42 ARQALARVMANQKRLERKLDEAEEEAEKWEKQAE-LALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQ 120 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444432211 111011234555666788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccc
Q 043674 251 IIEAHEKFIKLRNRFIVNQT 270 (891)
Q Consensus 251 v~~Ae~klkaLK~e~~~l~~ 270 (891)
+..++.++..++.....+..
T Consensus 121 l~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 121 LEELEAKLEELKSKREELKA 140 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987775544
No 60
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=89.72 E-value=13 Score=44.40 Aligned_cols=235 Identities=16% Similarity=0.212 Sum_probs=119.1
Q ss_pred CCChHHHHHHHHHHHHHHHhhh----hh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCc-ccccHHHH
Q 043674 144 GLNKEEALEEIDKLQKGILGLQ----TE---KEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGT-VIDDNEAR 215 (891)
Q Consensus 144 gLsk~eAe~EI~~LQk~il~LQ----tE---KEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a-~IED~EAR 215 (891)
.|+-.+|...++.+...|-.|- .| |.+|.-.+......+..+..+...+..++..++..|.-.. +++ .+|
T Consensus 270 ~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~--~~~ 347 (560)
T PF06160_consen 270 NLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELE--IVR 347 (560)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHH--HHH
Confidence 3445666666666666655543 22 3344555555556666666666666666666655443222 111 223
Q ss_pred HHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 043674 216 TLIAA--------------------------TAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQ 269 (891)
Q Consensus 216 aLmae--------------------------~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~ 269 (891)
.+... ..+..+.+.|..+++++....+....+...=.+|+.++..|+..+....
T Consensus 348 ~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ik 427 (560)
T PF06160_consen 348 ELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIK 427 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322 1455566666666666666667777777777777777777766665321
Q ss_pred cchhhhccchhhhhhhcccccccccccccCchhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhh
Q 043674 270 TDEREQEQPWEENENKTTAGSELKADLAPQGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQ 349 (891)
Q Consensus 270 ~~~~eke~~~~qq~le~is~lE~~i~~ae~~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQ 349 (891)
- -..+.-|.+++. ....-+......|......-+..-|.|.++....+.+.+-|-.|...+..-
T Consensus 428 R-------~lek~nLPGlp~---------~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~l 491 (560)
T PF06160_consen 428 R-------RLEKSNLPGLPE---------DYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEEL 491 (560)
T ss_pred H-------HHHHcCCCCCCH---------HHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 000122222222 112223334444444444444445555555555555544444444333221
Q ss_pred HH----------HHHHHHHHHHHHHHHHhhhhhhhcccccCCcc-ccchhhHHHHhccCCcc
Q 043674 350 TA----------LVKTLRSETDQLEGHISRLEGEKESLIADSDA-TSSADYLSEKLQSGKIE 400 (891)
Q Consensus 350 ta----------~i~RLr~E~deL~~kL~tLEe~k~~L~~ds~~-~~~l~~ls~kL~~vk~~ 400 (891)
-. =-||-|+...+.+..|...|.-- ....+ ...|+-++..|..|.|+
T Consensus 492 i~~A~L~E~~iQYaNRYR~~~~~v~~al~~Ae~~F----~~~~~Y~~ALe~i~~alE~vePG 549 (560)
T PF06160_consen 492 IDNATLAEQLIQYANRYRSDNPEVDEALTEAEDLF----RNEYDYEKALETIATALEKVEPG 549 (560)
T ss_pred HHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHH----HhhCCHHHHHHHHHHHHHHhCCC
Confidence 11 12567777777777777666431 11111 44566777777666665
No 61
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.62 E-value=29 Score=38.80 Aligned_cols=46 Identities=20% Similarity=0.158 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043674 222 AVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIV 267 (891)
Q Consensus 222 a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~ 267 (891)
..+-..+-+..|++.......+...+......+..-+-.|...+..
T Consensus 143 R~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~ 188 (325)
T PF08317_consen 143 RMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAE 188 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555544444444444433
No 62
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=89.47 E-value=37 Score=44.15 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 043674 332 IDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGE 373 (891)
Q Consensus 332 iDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~ 373 (891)
...-++.+-+||..+..-+-.+.++..++..|.++++.+=.+
T Consensus 1705 a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~ 1746 (1758)
T KOG0994|consen 1705 ANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDH 1746 (1758)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence 334455667788888777777788888888887777765433
No 63
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=89.39 E-value=33 Score=44.17 Aligned_cols=206 Identities=19% Similarity=0.228 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHhhchhhhhc
Q 043674 150 ALEEIDKLQKGIL---GLQTEKEFAKSSYERGYEKY----------------------WEIEDQITEMQAKVCNLQDEFG 204 (891)
Q Consensus 150 Ae~EI~~LQk~il---~LQtEKEa~~lqYqqsleK~----------------------~~LE~qIs~~Qe~v~~LqDEf~ 204 (891)
|-.+.+.||.-|. +|+ ++.|||-+|+|- .+|-.||-.+..++..|| +.-
T Consensus 1013 AK~QMDaIKqmIekKv~L~-----~L~qCqdALeKqnIa~AL~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesLQ-RAV 1086 (1439)
T PF12252_consen 1013 AKAQMDAIKQMIEKKVVLQ-----ALTQCQDALEKQNIAGALQALNNIPSDKEMSKISSELREQIQSVKQDLESLQ-RAV 1086 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHH-Hhh
Confidence 4556666655443 333 778888888773 245556666766677786 322
Q ss_pred cCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhh
Q 043674 205 IGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENEN 284 (891)
Q Consensus 205 ~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~l 284 (891)
.-.+|.|.|.-.-.-++.+...-..|+.|+.---.-....+-..-.+....++++=|+++-.+++. .++...
T Consensus 1087 ~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLRnEK~Rmh~---~~dkVD----- 1158 (1439)
T PF12252_consen 1087 VTPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLRNEKIRMHS---GTDKVD----- 1158 (1439)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhHHHhhcc---CCCccc-----
Confidence 223555544433344445555555555565433233334444555566677777777777777766 333221
Q ss_pred hcccccccccccccCchhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHH-------HHHHhHHHhhhhHHHHHHHH
Q 043674 285 KTTAGSELKADLAPQGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVD-------KVVNLESAVSSQTALVKTLR 357 (891)
Q Consensus 285 e~is~lE~~i~~ae~~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~-------KVisLE~~vSsQta~i~RLr 357 (891)
.+.++.++..|+.+.-|+.. -.|.++|..|..|++ .|-.+...+-.+.+.|+.||
T Consensus 1159 ---------FSDIEkLE~qLq~~~~kL~d---------Ayl~eitKqIsaLe~e~PKnltdvK~missf~d~laeiE~Lr 1220 (1439)
T PF12252_consen 1159 ---------FSDIEKLEKQLQVIHTKLYD---------AYLVEITKQISALEKEKPKNLTDVKSMISSFNDRLAEIEFLR 1220 (1439)
T ss_pred ---------HHHHHHHHHHHHHhhhhhHH---------HHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHhhhhHHHHHH
Confidence 12223344444444444432 357788888888886 35555566666777788877
Q ss_pred HHHHHHHHHHhhhhhhhcccccCCccccchhhHHHHhccCC
Q 043674 358 SETDQLEGHISRLEGEKESLIADSDATSSADYLSEKLQSGK 398 (891)
Q Consensus 358 ~E~deL~~kL~tLEe~k~~L~~ds~~~~~l~~ls~kL~~vk 398 (891)
.|- |+.=-.- .|+.+.|.||.|.+.||.+-
T Consensus 1221 nEr------IKkHGaS-----kePLDlSDlDkLk~~LQ~iN 1250 (1439)
T PF12252_consen 1221 NER------IKKHGAS-----KEPLDLSDLDKLKGQLQKIN 1250 (1439)
T ss_pred HHH------hhccCCC-----CCccchhhHHHHHHHHHHHH
Confidence 653 3332222 23445788999999998765
No 64
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=89.31 E-value=25 Score=45.68 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 043674 326 TQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGE 373 (891)
Q Consensus 326 ~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~ 373 (891)
+++-+-+-++-+.|.+|+...-.-+.++..+..+--...+++..+|++
T Consensus 619 ~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~ 666 (1317)
T KOG0612|consen 619 TEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKE 666 (1317)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777777777777666677777777764
No 65
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.96 E-value=22 Score=39.45 Aligned_cols=51 Identities=24% Similarity=0.238 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Q 043674 328 LVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESLI 378 (891)
Q Consensus 328 ~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L~ 378 (891)
+.+++.+||--...||.++-+-+.+...+..-+..+.....++.++++.|.
T Consensus 167 l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 167 LEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 456777777777888888888888888888888888888888888887773
No 66
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=88.96 E-value=50 Score=40.52 Aligned_cols=93 Identities=16% Similarity=0.241 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhchhhhh----ccCcccccHHHHHHHHHHHHH
Q 043674 150 ALEEIDKLQKGILGLQTEKEFAKSSYERGYEKY-WEIEDQITEMQAKVCNLQDEF----GIGTVIDDNEARTLIAATAVK 224 (891)
Q Consensus 150 Ae~EI~~LQk~il~LQtEKEa~~lqYqqsleK~-~~LE~qIs~~Qe~v~~LqDEf----~~~a~IED~EARaLmae~a~k 224 (891)
...|+..|++.+-.|...=.| .+.-.+.|.++ ++.|..|.++++.+..++++. ..-+.++-+-+-+.+|-.+.+
T Consensus 85 Lq~E~~~L~kElE~L~~qlqa-qv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~ 163 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQA-QVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNR 163 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHH
Confidence 344566666666555533333 22222333333 344444444444444443221 111122222233444555677
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043674 225 SCQDTLSKLQEKQEQSLEE 243 (891)
Q Consensus 225 sc~EtL~kLeekq~~s~ee 243 (891)
.+++-|..|+..+-....+
T Consensus 164 eLK~QL~Elq~~Fv~ltne 182 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNE 182 (617)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7777777777765555444
No 67
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=88.90 E-value=19 Score=44.99 Aligned_cols=207 Identities=18% Similarity=0.197 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhc-cCcccccHHHHHHH--HH------
Q 043674 150 ALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFG-IGTVIDDNEARTLI--AA------ 220 (891)
Q Consensus 150 Ae~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~-~~a~IED~EARaLm--ae------ 220 (891)
...|.-+++....-++..+--..+|.-----|+..+|.+...+|.-..++||..- ..++||.--+|+-. .+
T Consensus 83 stqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~ 162 (1265)
T KOG0976|consen 83 STQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAH 162 (1265)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhH
Confidence 4556666777777777766666777766667788888888888888888876533 22244322222221 11
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--hhhhccchhhhhhhccccccc
Q 043674 221 ------TAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTD--EREQEQPWEENENKTTAGSEL 292 (891)
Q Consensus 221 ------~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~--~~eke~~~~qq~le~is~lE~ 292 (891)
-++..-.+.|..+..++-....++-.+++.. +.+++-|+..++-...- +.-++...-+..++
T Consensus 163 eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~l---e~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~------- 232 (1265)
T KOG0976|consen 163 DIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKAL---EEKLEKFKEDLIEKDQKSLELHKDQENTQKVLK------- 232 (1265)
T ss_pred HHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH-------
Confidence 1555556778888888777777777776543 45566666555422110 00000000011111
Q ss_pred ccccccCchhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 043674 293 KADLAPQGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGH 366 (891)
Q Consensus 293 ~i~~ae~~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~k 366 (891)
++-.+....+-+..++.......|.+....++..+|-|+.-++--|=.-|..+.|..+..|+-|+.+.+.|+.-
T Consensus 233 ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt 306 (1265)
T KOG0976|consen 233 EVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQT 306 (1265)
T ss_pred HHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 11111122334455555544455555556677777888888888888889999999999999999988887643
No 68
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.79 E-value=0.97 Score=46.63 Aligned_cols=160 Identities=14% Similarity=0.190 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 171 AKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQR 250 (891)
Q Consensus 171 ~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~eeAk~e~eR 250 (891)
+.-+|.+-.+|+..|+.....++-+...+.-..+.+..- ..--....+.+...++..|++++..+...-.....|
T Consensus 22 li~ay~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~ 96 (194)
T PF08614_consen 22 LIDAYNRLADRTSLLKAENEQLQPEAESLPSSSSSSPSE-----SGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQ 96 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccccccccccccccccccccccc
Confidence 566788888888888888877776554443211111111 111233466677777888888887777777777777
Q ss_pred HHHHHHHHHHHHHhhhccccchhhhccchhhhhhhcccccccccccccCchhhHHHHHHHHHHHHhhcCCCccchhhHHH
Q 043674 251 IIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLAPQGKSDVELSSKKIEDQVAVDSNESLAVTQLVE 330 (891)
Q Consensus 251 v~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~ae~~e~Eve~L~eKIke~~E~~s~ssLsV~e~AE 330 (891)
+..+..++..++..+..... .|. ....++..|..+|+.+.+ .+.+..-
T Consensus 97 L~~~~~~l~~l~~~~~~~~~---------------~l~----------~l~~~~~~L~~~~~~l~~-------~l~ek~k 144 (194)
T PF08614_consen 97 LVELNDELQELEKELSEKER---------------RLA----------ELEAELAQLEEKIKDLEE-------ELKEKNK 144 (194)
T ss_dssp -----------------HHH---------------HHH----------HHHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred ccccccccchhhhhHHHHHH---------------HHH----------HHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 77777777777655442211 111 122333444444444433 2233333
Q ss_pred HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 043674 331 KIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHI 367 (891)
Q Consensus 331 kiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL 367 (891)
-++-+-+-++.|-..++.....+.+|..|+.+|..++
T Consensus 145 ~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 145 ANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777888888888888888888888877665
No 69
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.73 E-value=39 Score=38.44 Aligned_cols=210 Identities=18% Similarity=0.196 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHH
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKS-----SYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATA 222 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~l-----qYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a 222 (891)
.+|+.+|.-|++.|..++...+.+-. ..+.-+..++.+-.++..+|-++..+-||-. .+++| -+|-..++..-
T Consensus 96 ~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEke-El~~E-RD~yk~K~~RL 173 (319)
T PF09789_consen 96 NEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKE-ELVTE-RDAYKCKAHRL 173 (319)
T ss_pred HHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHH
Confidence 78999999999999998876654433 3355666667777777777777777666522 11111 11222233332
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhcccccccccccccC
Q 043674 223 VKSCQDTLSKLQE---KQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLAPQ 299 (891)
Q Consensus 223 ~ksc~EtL~kLee---kq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~ae~ 299 (891)
...+.--|..=.. .++....|=|-+.+|+..++++...+|..+.+-.. ..-..+-.++..+- ..+..
T Consensus 174 N~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~-------~le~k~~~~~~k~~---~~~~~ 243 (319)
T PF09789_consen 174 NHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKS-------ALERKRKKGIIKLG---NSASS 243 (319)
T ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhccccccccC---CCCCC
Confidence 2222222221111 27788888888999999999999999888875533 00000111111000 00011
Q ss_pred chhhHHHHHHHHHHHHhhcCCC------ccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhh
Q 043674 300 GKSDVELSSKKIEDQVAVDSNE------SLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRL 370 (891)
Q Consensus 300 ~e~Eve~L~eKIke~~E~~s~s------sLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tL 370 (891)
.-.-| .-...++++++.+++. .=|+.|+---.--|++.|-+.=.++++|--==+=|=.-+.+|..+|++|
T Consensus 244 ~~~~v-~s~kQv~~ll~~~~~~~~~~~~~~s~sdLksl~~aLle~indK~~al~Hqr~tNkILg~rv~ELE~kl~~L 319 (319)
T PF09789_consen 244 NLTGV-MSAKQVKELLESESNGCSLPASPQSISDLKSLATALLETINDKNLALQHQRKTNKILGNRVAELEKKLKTL 319 (319)
T ss_pred ccccc-ccHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11111 2345677877765533 2367777777888999999998888888766566777788888888775
No 70
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=88.62 E-value=3.5 Score=45.26 Aligned_cols=52 Identities=13% Similarity=0.300 Sum_probs=41.7
Q ss_pred CCccchhhHHHHHHHHHHHHHHhHHHhhhhH---HHHHHHHHHHHHHHHHHhhhh
Q 043674 320 NESLAVTQLVEKIDELVDKVVNLESAVSSQT---ALVKTLRSETDQLEGHISRLE 371 (891)
Q Consensus 320 ~ssLsV~e~AEkiDeLV~KVisLE~~vSsQt---a~i~RLr~E~deL~~kL~tLE 371 (891)
+-.+++.|+--+.++.++++.-||.++-..+ +.|.||+-|+-+|...|.--+
T Consensus 130 ati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqelavr~ 184 (333)
T KOG1853|consen 130 ATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELAVRT 184 (333)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557889999999999999999999987665 457899999888877664433
No 71
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=88.49 E-value=26 Score=42.65 Aligned_cols=52 Identities=29% Similarity=0.281 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043674 147 KEEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCN 198 (891)
Q Consensus 147 k~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~ 198 (891)
-.+-..+|+.|...|..+.++-+....++.+..+.+...+....+.+.++.-
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l 381 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKL 381 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888888888888888888888888888888887777777766663
No 72
>PRK04863 mukB cell division protein MukB; Provisional
Probab=88.49 E-value=30 Score=46.26 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Q 043674 151 LEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDE 202 (891)
Q Consensus 151 e~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDE 202 (891)
..++..+...+..|+...+...-..+..-+++.+++.++..++.++..|+.+
T Consensus 347 q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeq 398 (1486)
T PRK04863 347 QEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQ 398 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666665555555555555555556666666666655555444
No 73
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=88.38 E-value=16 Score=47.52 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHH
Q 043674 326 TQLVEKIDELVDKVVNLESAVSSQTALVKTLR 357 (891)
Q Consensus 326 ~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr 357 (891)
..+.+...++...+..++..+.......+++.
T Consensus 812 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 843 (1201)
T PF12128_consen 812 DELREEKPELEEQLRDLEQELQELEQELNQLQ 843 (1201)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666655555444443
No 74
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=88.28 E-value=0.14 Score=61.97 Aligned_cols=133 Identities=23% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhcccccccccccccCchhhHHHHHHHHHHHHhhcCCCccchhhHH
Q 043674 250 RIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLAPQGKSDVELSSKKIEDQVAVDSNESLAVTQLV 329 (891)
Q Consensus 250 Rv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~ae~~e~Eve~L~eKIke~~E~~s~ssLsV~e~A 329 (891)
++...+.++..|+++...+... ..++..|+ .-+..+..+...+.+.+.+|+..++|+.+.-.-. -.|.++-
T Consensus 268 ~~e~le~ei~~L~q~~~eL~~~--A~~a~~Lr---DElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk----~qvk~Le 338 (713)
T PF05622_consen 268 ELEELEKEIDELRQENEELQAE--AREARALR---DELDELREKADRADKLENEVEKYKKKLEDLEDLK----RQVKELE 338 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 4445555555566555555441 11111223 2233333444455677777877777777766533 3678888
Q ss_pred HHHHHHHHHHHHhHHHhhhhHH---HHHHHHHHHHHHHHHHhhhhhhhcccccCCccccchhhHHHHhccC
Q 043674 330 EKIDELVDKVVNLESAVSSQTA---LVKTLRSETDQLEGHISRLEGEKESLIADSDATSSADYLSEKLQSG 397 (891)
Q Consensus 330 EkiDeLV~KVisLE~~vSsQta---~i~RLr~E~deL~~kL~tLEe~k~~L~~ds~~~~~l~~ls~kL~~v 397 (891)
+....+++.++.||..+....+ ++..++.+|.+|+.++.........| -..+..|.+++..+
T Consensus 339 e~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l------~~e~~~L~ek~~~l 403 (713)
T PF05622_consen 339 EDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKL------EFENKQLEEKLEAL 403 (713)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 8888999999999988766443 44445555555555544433332222 33444555555443
No 75
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=88.18 E-value=93 Score=40.26 Aligned_cols=58 Identities=21% Similarity=0.190 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhc
Q 043674 147 KEEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFG 204 (891)
Q Consensus 147 k~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~ 204 (891)
...-..|+..|.+.|-.|+.|-|--.....+|=.-|.+||.+|+.++.+...+.++..
T Consensus 172 ~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ 229 (1195)
T KOG4643|consen 172 NLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAH 229 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556779999999999999888887888899999999999999999999999887754
No 76
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=88.17 E-value=41 Score=36.81 Aligned_cols=126 Identities=17% Similarity=0.284 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhcccccccccccccCch
Q 043674 222 AVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLAPQGK 301 (891)
Q Consensus 222 a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~ae~~e 301 (891)
.+-..+.++.+|+.+..+.+.+-+..++|+.+++.++.+.+.. .+-..++ .++. .++
T Consensus 46 ~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~----------~e~~aL~----------~E~~---~ak 102 (239)
T COG1579 46 ALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDE----------RELRALN----------IEIQ---IAK 102 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH----------HHHHHHH----------HHHH---HHH
Confidence 4555566667777777777777777777777777777544321 1111111 1111 112
Q ss_pred hhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcccccC
Q 043674 302 SDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESLIAD 380 (891)
Q Consensus 302 ~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L~~d 380 (891)
..+..|...|....+ -...+...|..+..+++.+|..+.- .-.++..++.++....+.+...++.|++.
T Consensus 103 ~r~~~le~el~~l~~-------~~~~l~~~i~~l~~~~~~~e~~~~e---~~~~~e~e~~~i~e~~~~~~~~~~~L~~~ 171 (239)
T COG1579 103 ERINSLEDELAELME-------EIEKLEKEIEDLKERLERLEKNLAE---AEARLEEEVAEIREEGQELSSKREELKEK 171 (239)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 223333334443333 2344555677777777777776653 34456667777777777777777666443
No 77
>PRK01156 chromosome segregation protein; Provisional
Probab=87.63 E-value=45 Score=41.74 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=11.7
Q ss_pred HHHHHhhhhhhhHhhhhcccchHH
Q 043674 724 YKHLREIQTELTLWLENNEVLKDE 747 (891)
Q Consensus 724 ~khLREi~tEL~vWlE~nalLk~E 747 (891)
...+.++..++..|-+.=.-|+.+
T Consensus 673 ~~~~~~~~~~~~~l~~~l~~l~~~ 696 (895)
T PRK01156 673 TSRINDIEDNLKKSRKALDDAKAN 696 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554444444433
No 78
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=87.10 E-value=55 Score=41.55 Aligned_cols=109 Identities=18% Similarity=0.203 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHH-
Q 043674 147 KEEALEEIDKLQKGILGLQ----TEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAAT- 221 (891)
Q Consensus 147 k~eAe~EI~~LQk~il~LQ----tEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~- 221 (891)
+..++.-|..|..++..+. +.++.+..-++|--.++..||-+..+.|-....--+ |..-|..+.
T Consensus 328 kd~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~-----------e~eqLr~ela 396 (980)
T KOG0980|consen 328 KDPRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENRE-----------EQEQLRNELA 396 (980)
T ss_pred CChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-----------HHHHHHHHHH
Confidence 3455555555555555544 334455555555556666777766666543322111 112222221
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 043674 222 ----AVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQT 270 (891)
Q Consensus 222 ----a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~ 270 (891)
.-.+|+..... ++.....+-...+|..+..+++..|.+++..+..
T Consensus 397 ql~a~r~q~eka~~~----~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~ 445 (980)
T KOG0980|consen 397 QLLASRTQLEKAQVL----VEEAENKALAAENRYEKLKEKYTELRQEHADLLR 445 (980)
T ss_pred HHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112111111 2444555556666777777777777776665533
No 79
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.78 E-value=43 Score=42.68 Aligned_cols=71 Identities=27% Similarity=0.223 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhHHH-------hhhhHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCcc----ccchhhHHHHhccCC
Q 043674 330 EKIDELVDKVVNLESA-------VSSQTALVKTLRSETDQLEGHISRLEGEKESLIADSDA----TSSADYLSEKLQSGK 398 (891)
Q Consensus 330 EkiDeLV~KVisLE~~-------vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L~~ds~~----~~~l~~ls~kL~~vk 398 (891)
|||-.|-+.|-.||.+ +-+++++..-||.|+|.+..+++.|+..+.+-++.--+ +..+..|...|++..
T Consensus 462 ekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdql 541 (1243)
T KOG0971|consen 462 EKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQL 541 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666543 56788888899999999999999999877654444333 677778888887665
Q ss_pred cc
Q 043674 399 IE 400 (891)
Q Consensus 399 ~~ 400 (891)
.+
T Consensus 542 qe 543 (1243)
T KOG0971|consen 542 QE 543 (1243)
T ss_pred HH
Confidence 44
No 80
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=86.67 E-value=40 Score=41.24 Aligned_cols=87 Identities=22% Similarity=0.261 Sum_probs=58.0
Q ss_pred CchhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHH----HHHHHHHHHhhhhhhh
Q 043674 299 QGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRS----ETDQLEGHISRLEGEK 374 (891)
Q Consensus 299 ~~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~----E~deL~~kL~tLEe~k 374 (891)
.++.+++.|++..+..+...... .. +-||.+--....+|..+..-+..|+|++. +.+.....|.+||.+.
T Consensus 253 ~lE~e~e~L~~ql~~~N~~~~~~--~~----~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l 326 (629)
T KOG0963|consen 253 FLEREVEQLREQLAKANSSKKLA--KI----DDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKEL 326 (629)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhc--cC----CchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666776666666543222 11 23666666666788888888888888764 6667777888888776
Q ss_pred cccccCCccccchhhHHHHhccC
Q 043674 375 ESLIADSDATSSADYLSEKLQSG 397 (891)
Q Consensus 375 ~~L~~ds~~~~~l~~ls~kL~~v 397 (891)
.+. .+.|..|-.+|++-
T Consensus 327 ~~~------~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 327 KAK------ISELEELKEKLNSR 343 (629)
T ss_pred HHH------HHHHHHHHHHHhhh
Confidence 555 56677777777655
No 81
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=86.61 E-value=28 Score=42.07 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=24.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 346 VSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 346 vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
+-.+.++|.++|+.+++|.++|..||.-...|
T Consensus 291 ~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L 322 (546)
T KOG0977|consen 291 QNYAREELRRIRSRISGLRAKLSELESRNSAL 322 (546)
T ss_pred hHHHHHHHHHHHhcccchhhhhccccccChhH
Confidence 34466788888888888888888888776655
No 82
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=86.43 E-value=31 Score=36.35 Aligned_cols=79 Identities=20% Similarity=0.374 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHH-----HH--------------HHHHHHHHHHHHHHHHH
Q 043674 179 YEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAA-----TA--------------VKSCQDTLSKLQEKQEQ 239 (891)
Q Consensus 179 leK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae-----~a--------------~ksc~EtL~kLeekq~~ 239 (891)
+-+|-+|.++|.++|.....|. .|.+.|+.- .| +.+-.+.|-.|.+.+..
T Consensus 11 ~~ki~~L~n~l~elq~~l~~l~-----------~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~ 79 (194)
T PF15619_consen 11 LHKIKELQNELAELQRKLQELR-----------KENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRK 79 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888887777774 235665532 22 33444555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043674 240 SLEEAKTEQQRIIEAHEKFIKLRNRFIVN 268 (891)
Q Consensus 240 s~eeAk~e~eRv~~Ae~klkaLK~e~~~l 268 (891)
+.+.-+....++.+...++..++.++-++
T Consensus 80 ~q~~~r~~~~klk~~~~el~k~~~~l~~L 108 (194)
T PF15619_consen 80 SQEQERELERKLKDKDEELLKTKDELKHL 108 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555444433
No 83
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=85.84 E-value=45 Score=40.39 Aligned_cols=31 Identities=29% Similarity=0.334 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 043674 331 KIDELVDKVVNLESAVSSQTALVKTLRSETD 361 (891)
Q Consensus 331 kiDeLV~KVisLE~~vSsQta~i~RLr~E~d 361 (891)
.|+.|=-|++.||..-+.-..+|.+|+...+
T Consensus 304 ~i~~Lr~klselE~~n~~L~~~I~dL~~ql~ 334 (546)
T KOG0977|consen 304 RISGLRAKLSELESRNSALEKRIEDLEYQLD 334 (546)
T ss_pred cccchhhhhccccccChhHHHHHHHHHhhhh
Confidence 3555666667777777777777777766643
No 84
>PRK09039 hypothetical protein; Validated
Probab=85.84 E-value=9.8 Score=42.99 Aligned_cols=136 Identities=14% Similarity=0.186 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhcccccccccccccCch
Q 043674 222 AVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLAPQGK 301 (891)
Q Consensus 222 a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~ae~~e 301 (891)
++.....+|..|+.++....+-...+..+...++.++..|+..+.....
T Consensus 47 ~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~------------------------------- 95 (343)
T PRK09039 47 EISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEA------------------------------- 95 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-------------------------------
Confidence 6666777777777777777777788888888888888888776653322
Q ss_pred hhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcccccCC
Q 043674 302 SDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESLIADS 381 (891)
Q Consensus 302 ~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L~~ds 381 (891)
.+..++..+.... . ...++-.+..++-..+..+...++.++.+|.+|+.+|..|..+|..|+.....+ +..
T Consensus 96 -----~r~~Le~~~~~~~-~--~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~a-e~~ 166 (343)
T PRK09039 96 -----ERSRLQALLAELA-G--AGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDAS-EKR 166 (343)
T ss_pred -----HHHHHHHHHhhhh-h--hcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 1111111111110 0 112334456677788888888888899999999999999998888888776555 222
Q ss_pred cc--ccchhhHHHHhccC
Q 043674 382 DA--TSSADYLSEKLQSG 397 (891)
Q Consensus 382 ~~--~~~l~~ls~kL~~v 397 (891)
.. ...|+.|-..|...
T Consensus 167 ~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 167 DRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 22 55666666666544
No 85
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=85.73 E-value=59 Score=42.57 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQIT 190 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs 190 (891)
...+.++..+...|..++.+.+.+--+..+.=.+|..+..++.
T Consensus 603 e~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~ 645 (1201)
T PF12128_consen 603 EELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREIT 645 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666555554444444443333333333333333
No 86
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.96 E-value=20 Score=44.81 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=44.3
Q ss_pred cCchhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 043674 298 PQGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGE 373 (891)
Q Consensus 298 e~~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~ 373 (891)
.....++..+.+.|..+++.-++..=+|..|+.-=-.+-++.-..|..+|--+..++-....|-++.++|.+|+..
T Consensus 809 ~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~q 884 (970)
T KOG0946|consen 809 QELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQ 884 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHh
Confidence 3444455555555555555443333344444443334444455555666666777777778888888888888744
No 87
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=84.79 E-value=39 Score=35.94 Aligned_cols=19 Identities=21% Similarity=0.351 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhhchhhh
Q 043674 184 EIEDQITEMQAKVCNLQDE 202 (891)
Q Consensus 184 ~LE~qIs~~Qe~v~~LqDE 202 (891)
+|=..|.++|-....|.||
T Consensus 5 dL~~~v~dL~~~n~~L~~e 23 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADE 23 (193)
T ss_pred HHHHHHHHHHHHhHHHHHH
Confidence 3344455555555555444
No 88
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=84.46 E-value=39 Score=37.81 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNL 199 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~L 199 (891)
...+..+..|+.....|....+-+...+....+++..|+.++..++.-+..+
T Consensus 152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~ 203 (325)
T PF08317_consen 152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEI 203 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5567778888888888888888889999999999999999999888877664
No 89
>PRK09039 hypothetical protein; Validated
Probab=84.40 E-value=21 Score=40.36 Aligned_cols=108 Identities=9% Similarity=0.103 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHH
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQ 227 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~ 227 (891)
..++.+|..|+..+..++++++.+..+|+...+-...++.++..++.+...+..+.. +.-...-....++..+.
T Consensus 77 ~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~s------e~~~~V~~L~~qI~aLr 150 (343)
T PRK09039 77 QDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSA------RALAQVELLNQQIAALR 150 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHH
Confidence 457889999999999999999999999885544455666666666544444432221 10011112223444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 228 DTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKL 261 (891)
Q Consensus 228 EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaL 261 (891)
..|+.|+..+..++..-+....++...+.++.+.
T Consensus 151 ~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 151 RQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554444444444444444443
No 90
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=84.39 E-value=0.3 Score=59.28 Aligned_cols=42 Identities=29% Similarity=0.375 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 332 IDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 332 iDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
...-|..|-.||.++..+.+.+++|+.- ++.+.-|++++..|
T Consensus 252 l~~ql~~i~~LE~en~~l~~Elk~Lr~~----~~n~elLeEe~~sL 293 (722)
T PF05557_consen 252 LKEQLAHIRELEKENRRLREELKHLRQS----QENVELLEEEKRSL 293 (722)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHH
Confidence 4456788999999999999998888763 33344444444444
No 91
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=84.04 E-value=38 Score=34.00 Aligned_cols=111 Identities=14% Similarity=0.231 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHH
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQ 227 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~ 227 (891)
.+|..=+..|...+-.|..+-...--.+..---|+..||.+|-.++..+..+++.+..+.. +. ....++.
T Consensus 10 d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~------~~----~~~E~l~ 79 (143)
T PF12718_consen 10 DNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK------RK----SNAEQLN 79 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HH----HhHHHHH
Confidence 4455555555555555555555444555555566667777777777777666544332211 11 1222555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043674 228 DTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVN 268 (891)
Q Consensus 228 EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l 268 (891)
..|..|++.++.+....+...+++..+..++..+-..+..+
T Consensus 80 rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~l 120 (143)
T PF12718_consen 80 RRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKAL 120 (143)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 56666666666666666666555555555555555544444
No 92
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=83.68 E-value=0.34 Score=60.28 Aligned_cols=205 Identities=17% Similarity=0.182 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 164 LQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEE 243 (891)
Q Consensus 164 LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~ee 243 (891)
-..|=-++...|+.-..-...|.+.|.++|-.+..|++++..--. + .-+++.+-..|...|..|...+..+...
T Consensus 16 ke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~-----~-R~kaek~r~dL~~ELe~l~~~Lee~~~~ 89 (859)
T PF01576_consen 16 KEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQ-----A-RAKAEKQRRDLSEELEELKERLEEAGGA 89 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 333434445555555566677777888888888888766542211 1 2256678888888999988888777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccchhhhccc--hh-hhhhhccccccccccccc-----------CchhhHHHHHH
Q 043674 244 AKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQP--WE-ENENKTTAGSELKADLAP-----------QGKSDVELSSK 309 (891)
Q Consensus 244 Ak~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~--~~-qq~le~is~lE~~i~~ae-----------~~e~Eve~L~e 309 (891)
...-.+=..+-+.++..||..+..... .-+.. .. ++-...+..|...|..++ ....++..|..
T Consensus 90 t~aq~E~~kkrE~El~~Lrr~LEe~~~---~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~ 166 (859)
T PF01576_consen 90 TQAQIELNKKREAELAKLRRDLEEANL---QHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQA 166 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 443333334444577777777753322 11111 11 122334444444444443 33344445555
Q ss_pred HHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 310 KIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 310 KIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
.+........+..=.+..+-..+.++-.++-..+..++..+....||..|+++|...|..++.....|
T Consensus 167 ~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l 234 (859)
T PF01576_consen 167 QLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQL 234 (859)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444433333344444556677777777788888888888888888888888888777665555
No 93
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=83.12 E-value=45 Score=33.47 Aligned_cols=91 Identities=19% Similarity=0.225 Sum_probs=45.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 162 LGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSL 241 (891)
Q Consensus 162 l~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~ 241 (891)
..|..|++.+.-.++.+=+++..+|......-.++.+|+-. .=..+..+-...+.|..++.....+.
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K-------------~~~lE~eld~~~~~l~~~k~~lee~~ 69 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKK-------------NQQLEEELDKLEEQLKEAKEKLEESE 69 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45566677666666666666666666555555555555422 11233333444444444443333333
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHhh
Q 043674 242 E---EAKTEQQRIIEAHEKFIKLRNRF 265 (891)
Q Consensus 242 e---eAk~e~eRv~~Ae~klkaLK~e~ 265 (891)
. .+-.+..||.-++.++...-..+
T Consensus 70 ~~~~~~E~l~rriq~LEeele~ae~~L 96 (143)
T PF12718_consen 70 KRKSNAEQLNRRIQLLEEELEEAEKKL 96 (143)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 2 12245556666665555444333
No 94
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=83.10 E-value=69 Score=36.32 Aligned_cols=111 Identities=19% Similarity=0.188 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHH
Q 043674 150 ALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDT 229 (891)
Q Consensus 150 Ae~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~Et 229 (891)
-+.|=..|+.+...|.+|....--+.|+- +.+.=++++.+-..+.+|+++.+.+.+ ....+--++.+++-.
T Consensus 172 LEeEN~~LR~Ea~~L~~et~~~EekEqqL---v~dcv~QL~~An~qia~LseELa~k~E------e~~rQQEEIt~Llsq 242 (306)
T PF04849_consen 172 LEEENEQLRSEASQLKTETDTYEEKEQQL---VLDCVKQLSEANQQIASLSEELARKTE------ENRRQQEEITSLLSQ 242 (306)
T ss_pred HHHHHHHHHHHHHHhhHHHhhccHHHHHH---HHHHHHHhhhcchhHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 45566677777777776666444444443 233346777777777778777665543 344556688888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 043674 230 LSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQ 269 (891)
Q Consensus 230 L~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~ 269 (891)
|++|+.+.....-+.-....+...+.+-=..|..++..+.
T Consensus 243 ivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elq 282 (306)
T PF04849_consen 243 IVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQ 282 (306)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888887777776666666666443
No 95
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=83.04 E-value=48 Score=41.79 Aligned_cols=177 Identities=18% Similarity=0.206 Sum_probs=108.6
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 174 SYERGYEKY-WEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRII 252 (891)
Q Consensus 174 qYqqsleK~-~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~ 252 (891)
|-..-+-|. -.+|.++.+.+-.+..|| .+.+..+.+.+.+++||+.++.......-+....+-|+.
T Consensus 85 qetriyRrdv~llEddlk~~~sQiriLQ-------------n~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh 151 (1265)
T KOG0976|consen 85 QETRIYRRDVNLLEDDLKHHESQIRILQ-------------NKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLH 151 (1265)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 333444443 346888888888888887 567788889999999999999999999988888888888
Q ss_pred HHHHHHHHHHHhhhccccchhhhcc------chhhhhhhcccccccccccccCchhhHHHHHHHHHHHHhhcCCCccchh
Q 043674 253 EAHEKFIKLRNRFIVNQTDEREQEQ------PWEENENKTTAGSELKADLAPQGKSDVELSSKKIEDQVAVDSNESLAVT 326 (891)
Q Consensus 253 ~Ae~klkaLK~e~~~l~~~~~eke~------~~~qq~le~is~lE~~i~~ae~~e~Eve~L~eKIke~~E~~s~ssLsV~ 326 (891)
+.+.++.+=.+++-....+.+++-. ..+++-++ .+.....-++.+-+|+++-.-+++--++-+.
T Consensus 152 ~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~----------e~~~en~~le~k~~k~~e~~~~nD~~sle~~ 221 (1265)
T KOG0976|consen 152 KLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLA----------EANREKKALEEKLEKFKEDLIEKDQKSLELH 221 (1265)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 8888887766665544331111110 01222222 2223334444555555555555544444333
Q ss_pred hHHHHHHHHHHHHHHhHHHhhhhH--------------HHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 327 QLVEKIDELVDKVVNLESAVSSQT--------------ALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 327 e~AEkiDeLV~KVisLE~~vSsQt--------------a~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
+.|++-.+|..=+..+|+|- +++.-|..-++++.++.+.|+-.+..|
T Consensus 222 ----~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L 282 (1265)
T KOG0976|consen 222 ----KDQENTQKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVL 282 (1265)
T ss_pred ----HHHHHHHHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677766666666654 344444455555555556665555555
No 96
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=81.72 E-value=98 Score=34.96 Aligned_cols=49 Identities=20% Similarity=0.058 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 043674 222 AVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQT 270 (891)
Q Consensus 222 a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~ 270 (891)
..+-...-...|.+.......+...+.+....+..-+-.|+..+..+..
T Consensus 138 R~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~ 186 (312)
T smart00787 138 RMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEE 186 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566677777777777777777777666666666666655544
No 97
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=81.52 E-value=48 Score=42.83 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 332 IDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 332 iDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
.|.|.++...||..+..-...|.|+...++.|..+|.+++..-..+
T Consensus 397 ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~ 442 (1141)
T KOG0018|consen 397 LDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEEL 442 (1141)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777788777777777777766543333
No 98
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=81.43 E-value=14 Score=39.78 Aligned_cols=59 Identities=27% Similarity=0.352 Sum_probs=52.0
Q ss_pred hhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCcc
Q 043674 325 VTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESLIADSDA 383 (891)
Q Consensus 325 V~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L~~ds~~ 383 (891)
..+.++++..+.+.+-.++..+..+.+.+.+|+..+..|+.+|..++..+.+|.-..+.
T Consensus 87 Ar~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~ 145 (225)
T COG1842 87 AREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAA 145 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566789999999999999999999999999999999999999999999888555444
No 99
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=81.42 E-value=96 Score=40.09 Aligned_cols=175 Identities=11% Similarity=0.201 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHH----------HH
Q 043674 153 EIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAA----------TA 222 (891)
Q Consensus 153 EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae----------~a 222 (891)
|+..-..+|..|+.+-..+.-.+.+|-+++.-|+..|-.+-.+|..+-++-....-|| .|-+. ..
T Consensus 175 ~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie-----~l~~k~~~v~y~~~~~e 249 (1072)
T KOG0979|consen 175 ELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIE-----LLEKKKKWVEYKKHDRE 249 (1072)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhccccchHhhhHH
Confidence 4555567777777777777777888888888899999888888888865433333332 22111 13
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhcccccccccccccCchh
Q 043674 223 VKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLAPQGKS 302 (891)
Q Consensus 223 ~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~ae~~e~ 302 (891)
|+........+.+......++++-...+++..+.+...+...+... ..
T Consensus 250 y~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~--------------------------------~~ 297 (1072)
T KOG0979|consen 250 YNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQK--------------------------------QR 297 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHH--------------------------------HH
Confidence 4444444444444444444444444444444433333333222211 12
Q ss_pred hHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 043674 303 DVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLE 371 (891)
Q Consensus 303 Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLE 371 (891)
++-.--.++.+.|+. ..++-.++.+++++..+|-.+--.-++.|.+.+-.+++++..|++.+
T Consensus 298 ~~~e~~~k~~~~~ek-------~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~ 359 (1072)
T KOG0979|consen 298 ELNEALAKVQEKFEK-------LKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETE 359 (1072)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 223333445555552 22334456677777777777777888888888888888888887765
No 100
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.41 E-value=1.1e+02 Score=38.14 Aligned_cols=47 Identities=11% Similarity=0.039 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043674 222 AVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVN 268 (891)
Q Consensus 222 a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l 268 (891)
.+......+.++...+...+.+++....++...+..+.++..++...
T Consensus 152 k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~ 198 (716)
T KOG4593|consen 152 KLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQ 198 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555556666677777777777777777777777777766643
No 101
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=81.05 E-value=1.2e+02 Score=38.01 Aligned_cols=27 Identities=11% Similarity=0.181 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSS 174 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lq 174 (891)
..-+.||.+|+-+|...-.--+-..++
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 457789999998887776444444444
No 102
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=80.92 E-value=1.4e+02 Score=36.36 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhc
Q 043674 154 IDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFG 204 (891)
Q Consensus 154 I~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~ 204 (891)
+..+++.+..|+.+-......++..-+.+..++.++..++.+...|.++|.
T Consensus 204 ~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~ 254 (650)
T TIGR03185 204 PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFR 254 (650)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555666666666666666666555443
No 103
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=80.77 E-value=1.4e+02 Score=37.36 Aligned_cols=136 Identities=14% Similarity=0.110 Sum_probs=83.3
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhc
Q 043674 212 NEARTLIAAT-----AVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKT 286 (891)
Q Consensus 212 ~EARaLmae~-----a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~ 286 (891)
+.+-.||.+. .|+-+.+....|.+++.....-+..+..+|...+++...|-.....+.. +-..+++.++.
T Consensus 482 d~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~-----el~~~~~~le~ 556 (698)
T KOG0978|consen 482 DKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIK-----ELTTLTQSLEM 556 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHH-----HHHHHHHHHHH
Confidence 3466777774 8899999999999999999999999999999999999999888776644 33344444442
Q ss_pred ccccccccccccCchhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 043674 287 TAGSELKADLAPQGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGH 366 (891)
Q Consensus 287 is~lE~~i~~ae~~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~k 366 (891)
... .-.++......++...+ .+.-.++ ++...+..++.++..=.-...||..|+..|..+
T Consensus 557 ~kk----------~~~e~~~~~~~Lq~~~e---k~~~~le-------~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~k 616 (698)
T KOG0978|consen 557 LKK----------KAQEAKQSLEDLQIELE---KSEAKLE-------QIQEQYAELELELEIEKFKRKRLEEELERLKRK 616 (698)
T ss_pred HHH----------HHHHHHHHHHHHHHHHH---HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 11222222222222222 1222334 444444445555555555556667777777666
Q ss_pred Hhhhhh
Q 043674 367 ISRLEG 372 (891)
Q Consensus 367 L~tLEe 372 (891)
|..+-.
T Consensus 617 le~~k~ 622 (698)
T KOG0978|consen 617 LERLKK 622 (698)
T ss_pred HHHhcc
Confidence 665543
No 104
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=80.06 E-value=37 Score=35.86 Aligned_cols=120 Identities=18% Similarity=0.283 Sum_probs=66.2
Q ss_pred ChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHH--HHHHHHH----HHHHHHHHHHHHhhchhhhhccCcccccHHHHHHH
Q 043674 146 NKEEALEEIDKLQKGILGLQTEKEFAKS-SYE--RGYEKYW----EIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLI 218 (891)
Q Consensus 146 sk~eAe~EI~~LQk~il~LQtEKEa~~l-qYq--qsleK~~----~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLm 218 (891)
.-.+...+|..|+..|..+.-|-.+.+- ||. .+|.+|. +|-.-|....+++..|....-..-.-+.+-.+.++
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk 92 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLK 92 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999999998864 443 3689994 44445567777777776543321111111111111
Q ss_pred -HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043674 219 -AATAVKSCQDTLSKLQE--------KQEQSLEEAKTEQQRIIEAHEKFIKLRNRF 265 (891)
Q Consensus 219 -ae~a~ksc~EtL~kLee--------kq~~s~eeAk~e~eRv~~Ae~klkaLK~e~ 265 (891)
...++..+..+|..|+. ..+...........++..+..++..|...+
T Consensus 93 ~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~l 148 (194)
T PF15619_consen 93 DKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQL 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22345555555555543 133344444444444445555555554433
No 105
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=79.96 E-value=1.5e+02 Score=39.14 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 043674 222 AVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQT 270 (891)
Q Consensus 222 a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~ 270 (891)
-+..-++.|.+.++....++.-|-...+|+.+++..++.||.+..+.-.
T Consensus 1592 ~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~ 1640 (1758)
T KOG0994|consen 1592 DIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSA 1640 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 3445677888888888889999999999999999999999998886533
No 106
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=78.56 E-value=63 Score=34.67 Aligned_cols=41 Identities=7% Similarity=0.229 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 222 AVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLR 262 (891)
Q Consensus 222 a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK 262 (891)
.|..|.+.|..+..-=+..-..+..-..|+...+.++.+||
T Consensus 98 ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK 138 (207)
T PF05010_consen 98 RYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALK 138 (207)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555544444433333444444444555455555544
No 107
>PRK10698 phage shock protein PspA; Provisional
Probab=78.48 E-value=1e+02 Score=33.10 Aligned_cols=112 Identities=14% Similarity=0.102 Sum_probs=72.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 156 KLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQE 235 (891)
Q Consensus 156 ~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLee 235 (891)
.|.--|..++..-..+.-..-+.++.-..+|.++..++..+..++.. +.-|.=-.+|.-+-.+-...+.|.+.+..|+.
T Consensus 28 ~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~k-A~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~ 106 (222)
T PRK10698 28 LVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEK-AELALRKEKEDLARAALIEKQKLTDLIATLEH 106 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555555666666677777777666666422 22222112334444455678889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043674 236 KQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVN 268 (891)
Q Consensus 236 kq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l 268 (891)
.+......+..+..++..++.++..+|..-.-+
T Consensus 107 ~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L 139 (222)
T PRK10698 107 EVTLVDETLARMKKEIGELENKLSETRARQQAL 139 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888888888888888887655444
No 108
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=77.93 E-value=7.9 Score=34.97 Aligned_cols=65 Identities=23% Similarity=0.285 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCccccchhhHHHHhccC
Q 043674 327 QLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESLIADSDATSSADYLSEKLQSG 397 (891)
Q Consensus 327 e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L~~ds~~~~~l~~ls~kL~~v 397 (891)
.+=.||+.+|+.|-.|...+..-.+....|..++..|......|.++.... ...|+.|-+||..|
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~------~~rl~~LL~kl~~v 72 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAW------QERLRSLLGKLEEV 72 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhhcC
Confidence 344578888888887777766666666666666666666555555544433 66777777777543
No 109
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=77.80 E-value=1e+02 Score=41.17 Aligned_cols=103 Identities=17% Similarity=0.125 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcc-Ccccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 167 EKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGI-GTVID-----DNEARTLIAATAVKSCQDTLSKLQEKQEQS 240 (891)
Q Consensus 167 EKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~-~a~IE-----D~EARaLmae~a~ksc~EtL~kLeekq~~s 240 (891)
+.+..+-....+++.|-.+...|..+++....|. +|.. ..... ..=...+.+..++..+..++..++..++.+
T Consensus 217 l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l~-~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1353)
T TIGR02680 217 LDDDELTDVADALEQLDEYRDELERLEALERALR-NFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETA 295 (1353)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455666677777777777777776666653 3221 00100 000112344457777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 043674 241 LEEAKTEQQRIIEAHEKFIKLRNRFIVNQT 270 (891)
Q Consensus 241 ~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~ 270 (891)
..+.....+++..++.++..++.++..+..
T Consensus 296 ~~~~~~~~~~~~~le~~~~~l~~~~~~l~~ 325 (1353)
T TIGR02680 296 REEERELDARTEALEREADALRTRLEALQG 325 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777777777777777777777777766644
No 110
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=77.59 E-value=63 Score=39.79 Aligned_cols=83 Identities=24% Similarity=0.243 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhc----hhhhhccCcccccHHHHHHHHHH
Q 043674 153 EIDKLQKGILGLQTEKEFAKSSYERGY-------EKYWEIEDQITEMQAKVCN----LQDEFGIGTVIDDNEARTLIAAT 221 (891)
Q Consensus 153 EI~~LQk~il~LQtEKEa~~lqYqqsl-------eK~~~LE~qIs~~Qe~v~~----LqDEf~~~a~IED~EARaLmae~ 221 (891)
|-..+|+.+..|+-.||...+||.=-. +||-+||-.|..-+.+.|. ||+++-..+..| .+-|-.-+
T Consensus 105 ~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLE---TqKlDLma 181 (861)
T KOG1899|consen 105 EYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLE---TQKLDLMA 181 (861)
T ss_pred cchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHH---HHHhHHHH
Confidence 456789999999999999999997543 6899999999999999886 888887776665 45444445
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043674 222 AVKSCQDTLSKLQEKQE 238 (891)
Q Consensus 222 a~ksc~EtL~kLeekq~ 238 (891)
++..++-.++-|+.++.
T Consensus 182 evSeLKLkltalEkeq~ 198 (861)
T KOG1899|consen 182 EVSELKLKLTALEKEQN 198 (861)
T ss_pred HHHHhHHHHHHHHHHhh
Confidence 66666677777765553
No 111
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=77.54 E-value=90 Score=35.27 Aligned_cols=238 Identities=20% Similarity=0.232 Sum_probs=130.6
Q ss_pred ChHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhhhhhHHHhhc--ccc-ccccCCcccccccCcccccccCCCCCCCC
Q 043674 17 DSFAQRAEMYYRKRPELINFVEDSYRSYRALAERYDHLSKELQSA--NRT-IATVFPEQVQFAMDAEDEENQGVSSPSNK 93 (891)
Q Consensus 17 dSfa~rAemyy~kRpeLi~~vee~yr~Yr~LAeryd~~~~el~~~--~~~-~~~~~p~q~~~~~~~~~~~~~~~~~~~~~ 93 (891)
+-..+.|.-|-.+|-+|..-|.++-.--++|-+++|-+..+++.- .+. +-.-+.. .| .+-
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e--L~--~~~------------- 92 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE--LR--KEY------------- 92 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--HHH-------------
Confidence 566777888999999999999999999999999999998776431 110 1000000 00 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCchhHHHhhhccCCCCCchHHHHhhhhhccCCChHHHHHHHHHHHHHHHhhh--hhHHHH
Q 043674 94 AAFKPNANIPNVPAIPKKDFMTPFLRMAKKGLKGNSSSAKAAAAAVSLKSGLNKEEALEEIDKLQKGILGLQ--TEKEFA 171 (891)
Q Consensus 94 ~~~~~~~~~p~~p~~p~~~~~~~~~~~~~~~~~k~~~s~~~~~~~~~~~sgLsk~eAe~EI~~LQk~il~LQ--tEKEa~ 171 (891)
.-+.. + .+.. ..+|.+...-+.+|+.|-..+...+ .++|--
T Consensus 93 ------------------------~~l~e----~--------~~~~-~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~ 135 (294)
T COG1340 93 ------------------------RELKE----K--------RNEF-NLGGRSIKSLEREIERLEKKQQTSVLTPEEERE 135 (294)
T ss_pred ------------------------HHHHH----H--------hhhh-hccCCCHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 00000 0 0111 1456666667777777766665444 555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHhhchhhhhccCcccccHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 043674 172 KSSYERGYEKYWEIEDQITEMQ------AKVCNLQDEFGIGTVIDDNEARTLIAA-----TAVKSCQDTLSKLQEKQEQS 240 (891)
Q Consensus 172 ~lqYqqsleK~~~LE~qIs~~Q------e~v~~LqDEf~~~a~IED~EARaLmae-----~a~ksc~EtL~kLeekq~~s 240 (891)
+. .+|..|+.++..++ ..+.+|..+.. .+ -.+|+.+... .+.+.|.+.|.++-.+.+..
T Consensus 136 lv------q~I~~L~k~le~~~k~~e~~~~~~el~aei~---~l-k~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~ 205 (294)
T COG1340 136 LV------QKIKELRKELEDAKKALEENEKLKELKAEID---EL-KKKAREIHEKIQELANEAQEYHEEMIKLFEEADEL 205 (294)
T ss_pred HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 34555555555544 22222322200 00 0124444333 26788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhcccccccccccc--cCchhhHHHHHHHHHHHHhhc
Q 043674 241 LEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLA--PQGKSDVELSSKKIEDQVAVD 318 (891)
Q Consensus 241 ~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~a--e~~e~Eve~L~eKIke~~E~~ 318 (891)
-.+|.+..+.+.++..++..+..+|..+.. +--.+.+.+ ..|......+ .....+++.=...|.+.|..+
T Consensus 206 Rkeade~he~~ve~~~~~~e~~ee~~~~~~-----elre~~k~i---k~l~~~~~~~~~~~~~ee~kera~ei~EKfk~G 277 (294)
T COG1340 206 RKEADELHEEFVELSKKIDELHEEFRNLQN-----ELRELEKKI---KALRAKEKAAKRREKREELKERAEEIYEKFKRG 277 (294)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 888888888888887777777777765533 111111111 1111110011 111224444556778888877
Q ss_pred CCCccchhhH
Q 043674 319 SNESLAVTQL 328 (891)
Q Consensus 319 s~ssLsV~e~ 328 (891)
..||..|+
T Consensus 278 --ekLt~Eel 285 (294)
T COG1340 278 --EKLTTEEL 285 (294)
T ss_pred --CCCCHHHH
Confidence 66666654
No 112
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=77.38 E-value=36 Score=35.55 Aligned_cols=133 Identities=20% Similarity=0.295 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhccccccccccc
Q 043674 217 LIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADL 296 (891)
Q Consensus 217 Lmae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~ 296 (891)
.|....+..+.+.|.+++.......-..+....++..++.++..|.....
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~------------------------------ 75 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAE------------------------------ 75 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------
Confidence 56666777777777777777777777777766666666666666553221
Q ss_pred ccCchhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 043674 297 APQGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKES 376 (891)
Q Consensus 297 ae~~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~ 376 (891)
.....+ +.. -..+.+.++..+.+.+-.|+..+..+...+.+|+..+..+..+|..+...+.+
T Consensus 76 ----------------~Al~~g-~ed-LAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~ 137 (221)
T PF04012_consen 76 ----------------LALAAG-RED-LAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREE 137 (221)
T ss_pred ----------------HHHHcC-CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 011 23345566788888899999999999999999999999999999999999888
Q ss_pred cccCCccccchhhHHHHhccC
Q 043674 377 LIADSDATSSADYLSEKLQSG 397 (891)
Q Consensus 377 L~~ds~~~~~l~~ls~kL~~v 397 (891)
|+...+-...-..+...+.++
T Consensus 138 l~ar~~~a~a~~~~~~~~~~~ 158 (221)
T PF04012_consen 138 LKARENAAKAQKKVNEALASF 158 (221)
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 866555433333344444333
No 113
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=76.76 E-value=1.2e+02 Score=38.01 Aligned_cols=119 Identities=23% Similarity=0.197 Sum_probs=81.6
Q ss_pred HHHHHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHH--HHHHHHHHHH
Q 043674 150 ALEEIDK-LQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEART--LIAATAVKSC 226 (891)
Q Consensus 150 Ae~EI~~-LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARa--Lmae~a~ksc 226 (891)
+-+|+.+ ++++|-++++|++-..=-|-.+-.++.+||.+..-.|--..++.-...-..-.+-+|||. -|-..++-.+
T Consensus 513 ~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dL 592 (961)
T KOG4673|consen 513 DKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDL 592 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 3445544 568899999999999999999999999999998887766555422111111222335554 4444588888
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043674 227 QDTLSKLQEKQEQ----SLEEAKTEQQRIIEAHEKFIKLRNRFIVN 268 (891)
Q Consensus 227 ~EtL~kLeekq~~----s~eeAk~e~eRv~~Ae~klkaLK~e~~~l 268 (891)
.++|.+-+....+ ...+-+.+-.|...|+...+.|-+++..-
T Consensus 593 R~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~T 638 (961)
T KOG4673|consen 593 RQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPET 638 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 8888776654333 33455566678899999999988887743
No 114
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=76.63 E-value=15 Score=45.48 Aligned_cols=52 Identities=19% Similarity=0.177 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcccc
Q 043674 215 RTLIAATAVKSCQDTLSKLQEKQEQSLEEAKT-EQQRIIEAHEKFIKLRNRFIVNQT 270 (891)
Q Consensus 215 RaLmae~a~ksc~EtL~kLeekq~~s~eeAk~-e~eRv~~Ae~klkaLK~e~~~l~~ 270 (891)
+.|-++..|-.++++|..|.+++..+. +.. .-. -.+.+|+..||++|.+-..
T Consensus 473 ~e~S~A~~~~gLk~kL~~Lr~E~sKa~--~~~~~~~--~~L~eK~~kLk~Efnkkl~ 525 (762)
T PLN03229 473 LEYTEAVIAMGLQERLENLREEFSKAN--SQDQLMH--PVLMEKIEKLKDEFNKRLS 525 (762)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHhcc--ccccccc--HHHHHHHHHHHHHHHHhhh
Confidence 556666788888888888888877652 211 000 0134457788888876655
No 115
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=76.20 E-value=1.1e+02 Score=35.59 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=16.0
Q ss_pred HHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 043674 333 DELVDKVVNLESAVSSQTALVKTLRSETDQLEGHI 367 (891)
Q Consensus 333 DeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL 367 (891)
.++...+.+++..+...++.++.|+.++.+++..+
T Consensus 313 ~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 347 (498)
T TIGR03007 313 QQLQIELAEAEAEIASLEARVAELTARIERLESLL 347 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 116
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.09 E-value=79 Score=39.90 Aligned_cols=48 Identities=25% Similarity=0.360 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhH-------HHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 330 EKIDELVDKVVNLE-------SAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 330 EkiDeLV~KVisLE-------~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
+|+++|-.||++.+ ++|-.-+.++++..+|++.|+.+|+.+.+..--|
T Consensus 451 ~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l 505 (1118)
T KOG1029|consen 451 FKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKL 505 (1118)
T ss_pred HHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555444 3444556667788888999999888888765555
No 117
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=75.31 E-value=2.1e+02 Score=35.14 Aligned_cols=70 Identities=14% Similarity=0.234 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCcc-----ccchhhHHHHhc
Q 043674 326 TQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESLIADSDA-----TSSADYLSEKLQ 395 (891)
Q Consensus 326 ~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L~~ds~~-----~~~l~~ls~kL~ 395 (891)
-++.+.+.+.+++.+.|+..++.-...|.-++.....+.-+|..++..+........+ ...++.|-+.|+
T Consensus 428 ~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~ 502 (581)
T KOG0995|consen 428 DEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELL 502 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556678888899999999999999999999999999999999888888777665555 444555555554
No 118
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=75.22 E-value=92 Score=33.72 Aligned_cols=65 Identities=20% Similarity=0.210 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 043674 305 ELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEG 372 (891)
Q Consensus 305 e~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe 372 (891)
..|..||.++--.. ..|.....+.+..+-|++++.-=.. ++.....+|++..|++..+.-....+
T Consensus 123 ~~Le~Ki~e~~~~~--~~l~ar~~~akA~~~v~~~~~~~s~-~sa~~~fer~e~kiee~ea~a~~~~e 187 (225)
T COG1842 123 AALEQKIAELRAKK--EALKARKAAAKAQEKVNRSLGGGSS-SSAMAAFERMEEKIEEREARAEAAAE 187 (225)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCc-hhhHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33334444443333 3333344444444444444433222 46666677777777776666655554
No 119
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=74.27 E-value=2e+02 Score=36.98 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHH
Q 043674 32 ELINFVEDSYRSYRA 46 (891)
Q Consensus 32 eLi~~vee~yr~Yr~ 46 (891)
.||.+|.|-|--|+.
T Consensus 190 pLI~lIqds~~lY~y 204 (980)
T KOG0980|consen 190 PLIPLIQDSSGLYDY 204 (980)
T ss_pred HHHHHHHhhhhHHHH
Confidence 466666666655544
No 120
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=74.24 E-value=1.3e+02 Score=32.25 Aligned_cols=41 Identities=22% Similarity=0.199 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 222 AVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLR 262 (891)
Q Consensus 222 a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK 262 (891)
..+++-..|..|+++-.....+......|...+-.+-.+|+
T Consensus 96 E~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq 136 (193)
T PF14662_consen 96 EQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQ 136 (193)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHH
Confidence 34444444444444444444444444444444444434443
No 121
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.59 E-value=1.9e+02 Score=34.61 Aligned_cols=170 Identities=16% Similarity=0.185 Sum_probs=85.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 161 ILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQS 240 (891)
Q Consensus 161 il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s 240 (891)
...+++|...-...|...=.+-+-++.++++.+ ..-.|..+.- .++..-..-|++|+.++...
T Consensus 243 neel~ae~kqh~v~~~ales~~sq~~e~~selE-~llklkerl~----------------e~l~dgeayLaKL~~~l~~~ 305 (521)
T KOG1937|consen 243 NEELQAEYKQHLVEYKALESKRSQFEEQNSELE-KLLKLKERLI----------------EALDDGEAYLAKLMGKLAEL 305 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHhHHHHH----------------HhcCChHhHHHHHHHHHHHH
Confidence 366677777777777766666666666666555 3333322211 12233333455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhhhccccchhhhccchhhhhhhcccccccccccccCchhhHHHHHHHHHHHHh
Q 043674 241 LEEAKTEQQRIIEAHEKFI----KLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLAPQGKSDVELSSKKIEDQVA 316 (891)
Q Consensus 241 ~eeAk~e~eRv~~Ae~klk----aLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~ae~~e~Eve~L~eKIke~~E 316 (891)
........+...+.+.-+. -|+.++. |++.- . .++..+++.+++++++.+.|....+
T Consensus 306 ~~~~~~ltqqwed~R~pll~kkl~Lr~~l~----------------~~e~e-~--~e~~~IqeleqdL~a~~eei~~~ee 366 (521)
T KOG1937|consen 306 NKQMEELTQQWEDTRQPLLQKKLQLREELK----------------NLETE-D--EEIRRIQELEQDLEAVDEEIESNEE 366 (521)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHh----------------cccch-H--HHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 5444455555444443322 2222222 11100 0 1133444556666666666664333
Q ss_pred hc---------CCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 043674 317 VD---------SNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGE 373 (891)
Q Consensus 317 ~~---------s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~ 373 (891)
.. -...++.. .....|-.+-.++-.|.+.|-+...|+-+|+..++.+-+.
T Consensus 367 l~~~Lrsele~lp~dv~rk-------~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~ 425 (521)
T KOG1937|consen 367 LAEKLRSELEKLPDDVQRK-------VYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEA 425 (521)
T ss_pred HHHHHHHHHhcCCchhHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 00112222 2334444455566677777888888888888877766543
No 122
>PF13514 AAA_27: AAA domain
Probab=72.81 E-value=2.8e+02 Score=36.24 Aligned_cols=152 Identities=13% Similarity=0.134 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccc-hh---hhhh---hccccccccc
Q 043674 222 AVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQP-WE---ENEN---KTTAGSELKA 294 (891)
Q Consensus 222 a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~-~~---qq~l---e~is~lE~~i 294 (891)
.+....+.+..++...............++..++....++...++-...- ...... .+ .++. ..+..+..++
T Consensus 674 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~-~~~~~~~~l~~l~~l~~~~~~~~~~~~ri 752 (1111)
T PF13514_consen 674 RREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADA-SPEEALEALELLEELREALAEIRELRRRI 752 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555444321110 000000 00 1111 1222222211
Q ss_pred ccccCchhhHHHHHHHHHHHHhhcCC--CccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 043674 295 DLAPQGKSDVELSSKKIEDQVAVDSN--ESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEG 372 (891)
Q Consensus 295 ~~ae~~e~Eve~L~eKIke~~E~~s~--ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe 372 (891)
...+.++.....++..+...-.. ......+....+...++....-...+......+.+++.+++.+...|..++.
T Consensus 753 ---~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 829 (1111)
T PF13514_consen 753 ---EQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEA 829 (1111)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22344445555555555443211 1112223444445555555555555666667777777777777777777776
Q ss_pred hhccc
Q 043674 373 EKESL 377 (891)
Q Consensus 373 ~k~~L 377 (891)
+...|
T Consensus 830 ~l~~L 834 (1111)
T PF13514_consen 830 ELAEL 834 (1111)
T ss_pred HHHHH
Confidence 66555
No 123
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=72.44 E-value=1e+02 Score=39.75 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQ 200 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~Lq 200 (891)
.+|..++.+|-..-...-.+-+-...+.++.-+++..|..+|.++-.....|.
T Consensus 233 ~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~ 285 (1200)
T KOG0964|consen 233 NEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLR 285 (1200)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444555554444444444455555566666666666666666666666664
No 124
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=72.39 E-value=2e+02 Score=34.74 Aligned_cols=49 Identities=22% Similarity=0.186 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 043674 147 KEEALEEIDKLQKGILGLQTEKEFAKSSYERGYE----KYWEIEDQITEMQAK 195 (891)
Q Consensus 147 k~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsle----K~~~LE~qIs~~Qe~ 195 (891)
-.+|...+..|+..+..|..-=+.+=.-|..+-. .+.+|..-+.+|.++
T Consensus 189 ~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~ 241 (560)
T PF06160_consen 189 YLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEE 241 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHC
Confidence 4678888889999998888888888777777653 344555555554443
No 125
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=72.38 E-value=7.9 Score=33.61 Aligned_cols=41 Identities=20% Similarity=0.395 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 043674 331 KIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLE 371 (891)
Q Consensus 331 kiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLE 371 (891)
||+++-++|-+++..+.....+++.|+..++++...++.|=
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999988888888888888888888876653
No 126
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=71.74 E-value=1.3e+02 Score=33.94 Aligned_cols=110 Identities=16% Similarity=0.141 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHH
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQ 227 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~ 227 (891)
......+..|+..-..|-..-+-+..-+....+|+..|..++..++.-+..++ .++ -+|.+.++ ..+....
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~-~~d------~~eL~~lk--~~l~~~~ 217 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELE-DCD------PTELDRAK--EKLKKLL 217 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-hCC------HHHHHHHH--HHHHHHH
Confidence 45667788888888888888888888999999999999999999887777663 222 23455555 3344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043674 228 DTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFI 266 (891)
Q Consensus 228 EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~ 266 (891)
..|.....++...+.+......+|.....+...+..++.
T Consensus 218 ~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~ 256 (312)
T smart00787 218 QEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIA 256 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555444
No 127
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=71.46 E-value=1.5e+02 Score=31.85 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNL 199 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~L 199 (891)
.+-..-|..++..+..-+.|-......|+.....+..+-.-|.....-+..+
T Consensus 5 ~d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~ 56 (207)
T PF05010_consen 5 KDLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQM 56 (207)
T ss_pred HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666666666666666666655555555444444443
No 128
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=71.44 E-value=53 Score=40.91 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Q 043674 170 FAKSSYERGYEKYWEIEDQITEMQAKVCNLQDE 202 (891)
Q Consensus 170 a~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDE 202 (891)
....++++=+.++.+++..+..+++.+..|.++
T Consensus 569 ~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR 601 (717)
T PF10168_consen 569 LLKQQKEQQLKELQELQEERKSLRESAEKLAER 601 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555443
No 129
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=71.03 E-value=1.4e+02 Score=38.84 Aligned_cols=112 Identities=17% Similarity=0.124 Sum_probs=81.2
Q ss_pred HHHHHHHH---HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hchhhhhccCcccccHHHHHHH
Q 043674 148 EEALEEID---KLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKV------CNLQDEFGIGTVIDDNEARTLI 218 (891)
Q Consensus 148 ~eAe~EI~---~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v------~~LqDEf~~~a~IED~EARaLm 218 (891)
+.--+||. .||...-.|+.|...+....+....+.-+|..+...+++.. ..|+|+.+ .+..-+
T Consensus 146 t~LFEEISgSiElK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~--------~~q~e~ 217 (1141)
T KOG0018|consen 146 TALFEEISGSIELKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKG--------KAQKEQ 217 (1141)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHH
Confidence 33445554 47888888888888888888889999888888875555222 24666633 345555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043674 219 AATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIV 267 (891)
Q Consensus 219 ae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~ 267 (891)
+--++--|+-.+.++-.++++...+..-...|....+.++...|.+.++
T Consensus 218 ~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~k 266 (1141)
T KOG0018|consen 218 FLWELFHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGK 266 (1141)
T ss_pred HHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHH
Confidence 5567778888888888888888888888888888888888887766553
No 130
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=70.97 E-value=2.2e+02 Score=35.88 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHhHHHhhhhHHHH----HHHHHHHHHHHHHHhhhhhhhcccccCC
Q 043674 327 QLVEKIDELVDKVVNLESAVSSQTALV----KTLRSETDQLEGHISRLEGEKESLIADS 381 (891)
Q Consensus 327 e~AEkiDeLV~KVisLE~~vSsQta~i----~RLr~E~deL~~kL~tLEe~k~~L~~ds 381 (891)
+.-++-..||.-|-+|-.+++...-.. .-||-||.+|+-+|+..|.-|..|+-.-
T Consensus 577 ear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v 635 (961)
T KOG4673|consen 577 EARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQV 635 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344456678889999988887655444 3489999999999999999999885433
No 131
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=70.88 E-value=1.4 Score=53.85 Aligned_cols=45 Identities=38% Similarity=0.498 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 333 DELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 333 DeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
..++..|+.|........+.+..+..++..+...+..|+.++..|
T Consensus 339 e~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l 383 (722)
T PF05557_consen 339 EDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQL 383 (722)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345555566665555556666666666666666666666555444
No 132
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.44 E-value=17 Score=43.81 Aligned_cols=124 Identities=17% Similarity=0.191 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhcccccccccccccCc
Q 043674 221 TAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLAPQG 300 (891)
Q Consensus 221 ~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~ae~~ 300 (891)
..+..|+.+...|.+++. +++....|++..|++..+|+..+.+..+ . + +.++ ++.+..
T Consensus 235 ~~ie~l~~~n~~l~e~i~----e~ek~~~~~eslre~~~~L~~D~nK~~~-------y-----~---~~~~---~k~~~~ 292 (581)
T KOG0995|consen 235 NEIEDLKKTNRELEEMIN----EREKDPGKEESLREKKARLQDDVNKFQA-------Y-----V---SQMK---SKKQHM 292 (581)
T ss_pred HHHHHHHHHHHHHHHHHH----HHhcCcchHHHHHHHHHHHHhHHHHHHH-------H-----H---HHHH---hhhHHH
Confidence 366778888888888887 6777778888888888888876665544 0 0 0011 222334
Q ss_pred hhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 301 KSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 301 e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
...|..+...|++..++. ..|.+. +|+|-++|=.= -=..++|+|++.|.++|...|..+.-+...|
T Consensus 293 ~~~l~~l~~Eie~kEeE~--e~lq~~-----~d~Lk~~Ie~Q----~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l 358 (581)
T KOG0995|consen 293 EKKLEMLKSEIEEKEEEI--EKLQKE-----NDELKKQIELQ----GISGEDVERMNLERNKLKRELNKIQSELDRL 358 (581)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHH-----HHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777888888877765 444443 77766555332 2236788999999888888887776654433
No 133
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=69.56 E-value=1.5 Score=54.78 Aligned_cols=209 Identities=19% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCc-ccccHHHHHHHH
Q 043674 148 EEALEEIDKLQKGILGLQTE-------KEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGT-VIDDNEARTLIA 219 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtE-------KEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a-~IED~EARaLma 219 (891)
...+.||+.|...|-.++.- +-.+-.+....-.|+.+.+..++.+......|+.+.+.-. .+++.+.
T Consensus 155 ~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~----- 229 (859)
T PF01576_consen 155 SQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAES----- 229 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 33455555555555544422 2223344444555666777777777766666665544222 3333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhcccccccccccccC
Q 043674 220 ATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLAPQ 299 (891)
Q Consensus 220 e~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~ae~ 299 (891)
.+.++.-..+.|+.++..+......+......+...+.++..++..+.. +.+. .-+..+.++..++.++
T Consensus 230 --~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~e---qlee-----E~e~k~~l~~qlsk~~- 298 (859)
T PF01576_consen 230 --QLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLRE---QLEE-----EEEAKSELERQLSKLN- 298 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --HHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHH---HHhh-----hhhhHHHHHHHHHHHh-
Confidence 3333334444455555555555555555555555666666666555544 1111 1112222333333321
Q ss_pred chhhHHHHHH--------HHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 043674 300 GKSDVELSSK--------KIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLE 371 (891)
Q Consensus 300 ~e~Eve~L~e--------KIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLE 371 (891)
.+|..++. .+.++.+..-...-.+.++-+.++++..++.+||.....-+.+|.-|+.+.+..+.....|+
T Consensus 299 --~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~Le 376 (859)
T PF01576_consen 299 --AELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELE 376 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11211111 22333344444555677788889999999999999888888888888877777777777777
Q ss_pred hhh
Q 043674 372 GEK 374 (891)
Q Consensus 372 e~k 374 (891)
...
T Consensus 377 KKq 379 (859)
T PF01576_consen 377 KKQ 379 (859)
T ss_dssp ---
T ss_pred HHH
Confidence 543
No 134
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=69.31 E-value=49 Score=37.46 Aligned_cols=184 Identities=15% Similarity=0.209 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhchh---hhhccCcccccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 178 GYEKYWEIEDQITEMQAKVCNLQ---DEFGIGTVIDDNEARTLIAATAV-KSCQDTLSKLQEKQEQSLEEAKTEQQRIIE 253 (891)
Q Consensus 178 sleK~~~LE~qIs~~Qe~v~~Lq---DEf~~~a~IED~EARaLmae~a~-ksc~EtL~kLeekq~~s~eeAk~e~eRv~~ 253 (891)
|-.|+ .+++++..++..+- +|. .|-|-.++.+ +++.+.=..|.++.+...+....-.+.|..
T Consensus 50 c~~rv----~qmtkty~Didavt~lLeEk----------erDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~q 115 (306)
T PF04849_consen 50 CSDRV----SQMTKTYNDIDAVTRLLEEK----------ERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQ 115 (306)
T ss_pred cccch----hhhhcchhhHHHHHHHHHHH----------hhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 44555 45566666666531 121 2444444444 555555555655555555555555555555
Q ss_pred HHHHHHHHHHhhhccccchhhhccchhhhhhhcccccccccccc-cCchhhHHHHHHHHHHHHhhcCCCccc--------
Q 043674 254 AHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLA-PQGKSDVELSSKKIEDQVAVDSNESLA-------- 324 (891)
Q Consensus 254 Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~a-e~~e~Eve~L~eKIke~~E~~s~ssLs-------- 324 (891)
.+-++ ++|.++.+..++..+...+. ..|-. .+-...+.. -..-.-+..|++|++.+.+++...-.-
T Consensus 116 LrHeL-~~kdeLL~~ys~~~ee~~~~-~~~~~---~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et 190 (306)
T PF04849_consen 116 LRHEL-SMKDELLQIYSNDDEESEPE-SSEST---PLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTET 190 (306)
T ss_pred HHHHH-HHHHHHHHhcCcHhhhcccc-cCCCc---cccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 55554 45666666655211111100 00110 000000000 011233455666666665543211111
Q ss_pred ----------hhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcccccC
Q 043674 325 ----------VTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESLIAD 380 (891)
Q Consensus 325 ----------V~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L~~d 380 (891)
|.|.+......=..|..|-..+...++...|.+.||..|.++|-.|+..+..+...
T Consensus 191 ~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~E 256 (306)
T PF04849_consen 191 DTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAE 256 (306)
T ss_pred hhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 22222222333346788888888777777777777777777777777777666433
No 135
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=68.89 E-value=1.8e+02 Score=31.69 Aligned_cols=98 Identities=22% Similarity=0.269 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhcccccccccccc
Q 043674 218 IAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLA 297 (891)
Q Consensus 218 mae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~a 297 (891)
++..++..-.+++..|+++...+.++|..+..+...|+.....|+........
T Consensus 23 ~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~e--------------------------- 75 (246)
T PF00769_consen 23 RAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEE--------------------------- 75 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
Confidence 33446666677888888888888888888777777777777666643332211
Q ss_pred cCchhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHh
Q 043674 298 PQGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHIS 368 (891)
Q Consensus 298 e~~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~ 368 (891)
+. ..|+.++.++--.|..|+.++....+.+.+|+.++..-+..+.
T Consensus 76 -------------------Ek-------~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~ 120 (246)
T PF00769_consen 76 -------------------EK-------EQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEE 120 (246)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1234456666666777777777777777777766555554433
No 136
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=68.51 E-value=2.5e+02 Score=33.16 Aligned_cols=104 Identities=26% Similarity=0.407 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-----------HHHHHHHHHHHH----HHHhhchhhhhccCcccccH
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYERGYE-----------KYWEIEDQITEM----QAKVCNLQDEFGIGTVIDDN 212 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsle-----------K~~~LE~qIs~~----Qe~v~~LqDEf~~~a~IED~ 212 (891)
..-.+|+..++.....|+.-=|..+-+|+.-+. ||..||.|++++ |.++-.|..|
T Consensus 263 ~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqE---------- 332 (455)
T KOG3850|consen 263 DAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQE---------- 332 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----------
Confidence 345678888888888888777777777765432 677788888765 3444445433
Q ss_pred HHHHHHHHH--------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHH
Q 043674 213 EARTLIAAT--------------AVKSCQDTLSKLQEKQEQ-SLEEAKTEQQ-RIIEAHEKFIKLRN 263 (891)
Q Consensus 213 EARaLmae~--------------a~ksc~EtL~kLeekq~~-s~eeAk~e~e-Rv~~Ae~klkaLK~ 263 (891)
.++|++. ++.+|+-.|++|+-.|-. -...+....+ +....=-++-+..-
T Consensus 333 --lasmeervaYQsyERaRdIqEalEscqtrisKlEl~qq~qqv~Q~e~~~na~a~~llgk~iNiiL 397 (455)
T KOG3850|consen 333 --LASMEERVAYQSYERARDIQEALESCQTRISKLELQQQQQQVVQLEGLENAVARRLLGKFINIIL 397 (455)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence 3334432 777899999998866542 2233333332 44444444444433
No 137
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=68.19 E-value=1e+02 Score=30.92 Aligned_cols=135 Identities=16% Similarity=0.212 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 172 KSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRI 251 (891)
Q Consensus 172 ~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv 251 (891)
.+-|++.+.+..-||.++.-...-+.-|+.|.. +.+.+|....+.|..|+........+-+.+.+++
T Consensus 19 ~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~-------------~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 19 SFDYEQLLDRKRALERQLAANLHQLELLQEEIE-------------KEEAALERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456888888888889998888888888875533 5667777788888888777665555544444433
Q ss_pred HHHHHHHHHHHHhhhccccchhhhccc-hhh-hhhh-cccccccccccccC-chhhHHHHHHHHHHHHhhcCCCccchhh
Q 043674 252 IEAHEKFIKLRNRFIVNQTDEREQEQP-WEE-NENK-TTAGSELKADLAPQ-GKSDVELSSKKIEDQVAVDSNESLAVTQ 327 (891)
Q Consensus 252 ~~Ae~klkaLK~e~~~l~~~~~eke~~-~~q-q~le-~is~lE~~i~~ae~-~e~Eve~L~eKIke~~E~~s~ssLsV~e 327 (891)
+..+...... -...+ ..+ .++. ..+. .... ...+|..+-..+..+.+.--++.-.|..
T Consensus 86 ----------~~vL~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~l~d~el~~l~~ql~~hl~s~~~n~~~l~~ 147 (160)
T PF13094_consen 86 ----------HPVLQLDDSG--VLELPELPQKSLLEASESR------FAPTLCDEELLPLLKQLNKHLESMQNNLQQLKG 147 (160)
T ss_pred ----------chhhcccccc--ccccccccccccccccccc------cCcccchHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 1111111110 00000 111 1110 0000 0112 2667888888888888865555444666
Q ss_pred HHHHHHHHHH
Q 043674 328 LVEKIDELVD 337 (891)
Q Consensus 328 ~AEkiDeLV~ 337 (891)
|.+.|+....
T Consensus 148 ~~~~ie~~~~ 157 (160)
T PF13094_consen 148 LLEAIERSYA 157 (160)
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 138
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=67.88 E-value=1.3e+02 Score=29.74 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043674 221 TAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRF 265 (891)
Q Consensus 221 ~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~ 265 (891)
..+..+...+..|+.+...+.+=-.+-.+++.+++.-+..||.-+
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 355667777778888888777777778888888888888877544
No 139
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=67.81 E-value=18 Score=45.19 Aligned_cols=90 Identities=22% Similarity=0.280 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHH-HHHHHHHH
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLI-AATAVKSC 226 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLm-ae~a~ksc 226 (891)
..++.|+..|+..+..|+.|=+--+..++-.+.|+-+||.++..+-.+....+.. ..+.-+-. ...|- |+--+-.|
T Consensus 669 ~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~-~~~~k~kq--e~EiaaAA~KLAEC 745 (769)
T PF05911_consen 669 KDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLA-NEDKKIKQ--EKEIAAAAEKLAEC 745 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhcc-ccccccch--HHHHHHHHHHHHHH
Confidence 4567888888888888988888888888888889989988888876554322110 11111100 01121 22248899
Q ss_pred HHHHHHHHHHHHHH
Q 043674 227 QDTLSKLQEKQEQS 240 (891)
Q Consensus 227 ~EtL~kLeekq~~s 240 (891)
|+||..|-.++...
T Consensus 746 QeTI~sLGkQLksL 759 (769)
T PF05911_consen 746 QETIASLGKQLKSL 759 (769)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887643
No 140
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.69 E-value=2.9e+02 Score=35.41 Aligned_cols=172 Identities=16% Similarity=0.131 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhcccccccccccc---
Q 043674 221 TAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLA--- 297 (891)
Q Consensus 221 ~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~a--- 297 (891)
++..+|++....|+.+.+...++......-.....+.+..||.+++..... ...+-+..+.....+.++-.+
T Consensus 671 ~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~-----~~~~~q~~e~~~t~~eel~a~~~e 745 (970)
T KOG0946|consen 671 YQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSK-----QRDLLQGAEASKTQNEELNAALSE 745 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-----hhhHHhHHHhccCChHHHHHHHHH
Confidence 478889999999999999999999999999999999999999999955441 111112222222222221111
Q ss_pred -cCchhhHHHHHHHHHHHHh------------hcCCCccc-hhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHH
Q 043674 298 -PQGKSDVELSSKKIEDQVA------------VDSNESLA-VTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQL 363 (891)
Q Consensus 298 -e~~e~Eve~L~eKIke~~E------------~~s~ssLs-V~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL 363 (891)
+..+.+...+..++.+..+ ..+..++. ..---+.+-++..+...+.+-.-.++.++++++.++..+
T Consensus 746 ~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~ 825 (970)
T KOG0946|consen 746 NKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQSELTQLKEQIQTL 825 (970)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 1222222333333321111 11112111 111223444555555555666666777777777777766
Q ss_pred HHHHhhhhhhhcccccCCcc-ccchhhHHHHhccC
Q 043674 364 EGHISRLEGEKESLIADSDA-TSSADYLSEKLQSG 397 (891)
Q Consensus 364 ~~kL~tLEe~k~~L~~ds~~-~~~l~~ls~kL~~v 397 (891)
-..+...-+....+-..... .....+++++|.+.
T Consensus 826 ~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l 860 (970)
T KOG0946|consen 826 LERTSAAADSLESMGSTEKNLANELKLIEQKLSNL 860 (970)
T ss_pred HHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHH
Confidence 66666655555544222222 44555666655433
No 141
>PRK04406 hypothetical protein; Provisional
Probab=67.63 E-value=11 Score=34.25 Aligned_cols=46 Identities=17% Similarity=0.339 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 332 IDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 332 iDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
++.+-+.|..||..++.|..-|+.|+..+-..+..|..|...+..|
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567778888888888888888888888888888888887765444
No 142
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=67.45 E-value=2.3e+02 Score=34.06 Aligned_cols=76 Identities=24% Similarity=0.318 Sum_probs=55.2
Q ss_pred CCccc-ccccCcchhhhhhHHHHHHHHhhcHHHHHHhHHHHhh---hhhhHHHHHHHHHHHhhhhc--cchHHHHHHHHh
Q 043674 485 TPNWR-MLSSGLEDREKILLEEYTSVLHNYTDVRRKLSVMEKK---NRDRFIELALQIRELENAVA--FRDEEIHALRQK 558 (891)
Q Consensus 485 ~~~wq-l~~~GledrEKiLL~EYTsvLrNYKdvk~kL~evEkK---Nqd~~~E~~lqirELk~Ana--~KDeEI~sLr~~ 558 (891)
.|..+ .|++..-+ =+-++.+|..+-+.|++.+++|.++.++ ....+-.+..||.||+.++- --|+++..-++.
T Consensus 142 ~~~~~~~lLD~~~~-~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~ 220 (563)
T TIGR00634 142 RPDEQRQLLDTFAG-ANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQR 220 (563)
T ss_pred CHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHH
Confidence 35556 45544333 1348999999999999999999998554 45556677889999999985 345666666677
Q ss_pred hcc
Q 043674 559 LGT 561 (891)
Q Consensus 559 l~~ 561 (891)
|+.
T Consensus 221 L~n 223 (563)
T TIGR00634 221 LSN 223 (563)
T ss_pred HhC
Confidence 666
No 143
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=67.45 E-value=2.4e+02 Score=35.32 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=26.0
Q ss_pred hcHHHHHHhHHHHhhhhhhHHHHHHHHHHHhhhhccchHHHHHHHHhhccccCCCC
Q 043674 512 NYTDVRRKLSVMEKKNRDRFIELALQIRELENAVAFRDEEIHALRQKLGTVSHTSL 567 (891)
Q Consensus 512 NYKdvk~kL~evEkKNqd~~~E~~lqirELk~Ana~KDeEI~sLr~~l~~~~~~~~ 567 (891)
-+-|+||+|..++ ...-.||.||.-|+++|.-++---|
T Consensus 623 aLg~akrq~ei~~------------------~~~~~~d~ei~~lk~ki~~~~av~p 660 (697)
T PF09726_consen 623 ALGDAKRQLEIAQ------------------GQLRKKDKEIEELKAKIAQLLAVMP 660 (697)
T ss_pred HHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3457777765444 4455689999999999887444333
No 144
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=66.72 E-value=2.9e+02 Score=33.26 Aligned_cols=66 Identities=12% Similarity=0.282 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhh
Q 043674 301 KSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRL 370 (891)
Q Consensus 301 e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tL 370 (891)
...+..+...+............++.++...++++..++-.|+.. ...++.|..+++.+..++..+
T Consensus 300 p~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~----~~~le~L~~el~~l~~~l~~~ 365 (563)
T TIGR00634 300 PERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDS----DESLEALEEEVDKLEEELDKA 365 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555433334447788888888887777765543 235555555555555555444
No 145
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=66.55 E-value=2.3e+02 Score=37.92 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHH-------HHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHH
Q 043674 150 ALEEIDKLQKGILGLQTEKE---FAKSSYERGYEKYW-------EIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIA 219 (891)
Q Consensus 150 Ae~EI~~LQk~il~LQtEKE---a~~lqYqqsleK~~-------~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLma 219 (891)
.-.||...+.+|--+++-|+ ...+.-+++..||. ++|.++...+..+..+. ..--.+++-.++.-..
T Consensus 197 ~~~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~---~~~~el~k~~~~~~~l 273 (1294)
T KOG0962|consen 197 QSQEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIE---KSLKELEKLLKQVKLL 273 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 44588888888888876554 45555666666555 44555444444444431 1011222223333344
Q ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 043674 220 ATAVKSCQDTLSKLQEKQE--------QSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQT 270 (891)
Q Consensus 220 e~a~ksc~EtL~kLeekq~--------~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~ 270 (891)
....+.|.+.++.|..++. ...+.-....+|+..-+.++..+...+..++.
T Consensus 274 ~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~ 332 (1294)
T KOG0962|consen 274 DSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLNE 332 (1294)
T ss_pred HHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4578888888888887644 44455555666776666777666666666544
No 146
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=65.73 E-value=2.1e+02 Score=34.71 Aligned_cols=123 Identities=17% Similarity=0.222 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhcccccccccccc-cCc
Q 043674 222 AVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLA-PQG 300 (891)
Q Consensus 222 a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~a-e~~ 300 (891)
+-+.|...+.+.-+++..-..++..- ..+..+++..|.+++..+.. +|+-.=+.++.+|..- +.-
T Consensus 388 ~~~e~~~~~r~~lekl~~~q~e~~~~---l~~v~eKVd~LpqqI~~vs~-----------Kc~~~Ksd~d~kIdtE~k~R 453 (531)
T PF15450_consen 388 AKNEWESDERKSLEKLDQWQNEMEKH---LKEVQEKVDSLPQQIEEVSD-----------KCDLHKSDSDTKIDTEGKAR 453 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhHHHHHHHH-----------HHHHHHhhhhhhccHHHHHH
Confidence 33455555555555555555554433 34445566677776665544 4555455555555443 355
Q ss_pred hhhHHHHHHHHHHHHh-----hcCCCccchhhHHHHHHHHHHHHHHhHHHhhh-hHHHHHHHHHHH
Q 043674 301 KSDVELSSKKIEDQVA-----VDSNESLAVTQLVEKIDELVDKVVNLESAVSS-QTALVKTLRSET 360 (891)
Q Consensus 301 e~Eve~L~eKIke~~E-----~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSs-Qta~i~RLr~E~ 360 (891)
+.+|+++++.++..+. ...++.=++.+|-.+++ -+-|+.||..|-- .|-+=.+.++|+
T Consensus 454 ~~eV~~vRqELa~lLssvQ~~~e~~~~rkiaeiqg~l~--~~qi~kle~siq~nKtiqn~kfntEt 517 (531)
T PF15450_consen 454 EREVGAVRQELATLLSSVQLLKEDNPGRKIAEIQGKLA--TNQIMKLENSIQTNKTIQNLKFNTET 517 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccchHH
Confidence 8899999999998654 12234446788888888 7889999988743 333333444444
No 147
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=64.68 E-value=36 Score=38.84 Aligned_cols=124 Identities=15% Similarity=0.196 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccchhhhccc-----hhhhhhhcccccccccccc-----cCchhhHHHHHHHHHHHHh
Q 043674 247 EQQRIIEAHEKFIKLRNRFIVNQTDEREQEQP-----WEENENKTTAGSELKADLA-----PQGKSDVELSSKKIEDQVA 316 (891)
Q Consensus 247 e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~-----~~qq~le~is~lE~~i~~a-----e~~e~Eve~L~eKIke~~E 316 (891)
...|+...+..|..|-..+|. .. ++-.. ...--+..+..|..++.-+ ...+..|+.|..++....+
T Consensus 207 ~la~~a~LE~RL~~LE~~lG~-~~---~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~ 282 (388)
T PF04912_consen 207 QLARAADLEKRLARLESALGI-DS---DKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAE 282 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhCC-Cc---cccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888888888888888886 22 11000 1111224455555554444 4567778888888877665
Q ss_pred hcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHH------HHHHHHHHHhhhhhhhc
Q 043674 317 VDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRS------ETDQLEGHISRLEGEKE 375 (891)
Q Consensus 317 ~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~------E~deL~~kL~tLEe~k~ 375 (891)
...... .-.+-..||++|-+.+-.++.....-=..|+||++ ++-.-...|..|+..-.
T Consensus 283 ~~~~~~-~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~ 346 (388)
T PF04912_consen 283 KRKEAK-EDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQS 346 (388)
T ss_pred cccccc-ccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 442221 23445579999999999999999998899999875 23333344455554433
No 148
>PF13514 AAA_27: AAA domain
Probab=64.34 E-value=4.4e+02 Score=34.48 Aligned_cols=89 Identities=12% Similarity=0.131 Sum_probs=42.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHH--------HHHHHHHHHHH
Q 043674 159 KGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIA--------ATAVKSCQDTL 230 (891)
Q Consensus 159 k~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLma--------e~a~ksc~EtL 230 (891)
.....++.+...+.-+++..-.++..++..+...+...+..=.+.|-...+...++..... ..++..+...|
T Consensus 673 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ri 752 (1111)
T PF13514_consen 673 ARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEELREALAEIRELRRRI 752 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555666666666666666666666553222333333333333332111 12455555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043674 231 SKLQEKQEQSLEEAKTE 247 (891)
Q Consensus 231 ~kLeekq~~s~eeAk~e 247 (891)
..++..+......+..+
T Consensus 753 ~~~~~~~~~f~~~~~~L 769 (1111)
T PF13514_consen 753 EQMEADLAAFEEQVAAL 769 (1111)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555544444444333
No 149
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=64.30 E-value=97 Score=37.07 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 181 KYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIK 260 (891)
Q Consensus 181 K~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klka 260 (891)
+|.+|.-.=..+..+|..|| |..+--+.+-+-|.+|++.++...++--...=-..+.+..+.+
T Consensus 332 ~IqdLq~sN~yLe~kvkeLQ-----------------~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqn 394 (527)
T PF15066_consen 332 RIQDLQCSNLYLEKKVKELQ-----------------MKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQN 394 (527)
T ss_pred HHHHhhhccHHHHHHHHHHH-----------------HHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHH
Confidence 55566555566666666666 4444455667777788887777766543322223455555555
Q ss_pred HHHhhh
Q 043674 261 LRNRFI 266 (891)
Q Consensus 261 LK~e~~ 266 (891)
|-..++
T Consensus 395 Lqe~la 400 (527)
T PF15066_consen 395 LQEALA 400 (527)
T ss_pred HHHHHH
Confidence 554444
No 150
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=63.58 E-value=2.2e+02 Score=31.84 Aligned_cols=82 Identities=11% Similarity=0.057 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHH
Q 043674 154 IDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKL 233 (891)
Q Consensus 154 I~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kL 233 (891)
...++..+..++.+.+....+.++.-..+..++.++..++++....+.=+..|++.. ...+.+..++...+..+..+
T Consensus 139 ~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~---~~~~~~~~~~~~~~~~l~~~ 215 (423)
T TIGR01843 139 KSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSR---LELLELERERAEAQGELGRL 215 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHHHhHHHHH
Confidence 334445555555555555555555555555666666666666555544444444432 23333444444444444444
Q ss_pred HHHHH
Q 043674 234 QEKQE 238 (891)
Q Consensus 234 eekq~ 238 (891)
+..+.
T Consensus 216 ~~~l~ 220 (423)
T TIGR01843 216 EAELE 220 (423)
T ss_pred HHHHH
Confidence 44443
No 151
>PRK10884 SH3 domain-containing protein; Provisional
Probab=63.23 E-value=26 Score=37.27 Aligned_cols=73 Identities=7% Similarity=0.049 Sum_probs=55.3
Q ss_pred CchhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 043674 299 QGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEK 374 (891)
Q Consensus 299 ~~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k 374 (891)
+.+.++..++.++.+....- .-...+|.+++.+.-+.|..|+........++..++.+++.|..++.++.++.
T Consensus 97 ~le~el~~l~~~l~~~~~~~---~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTW---NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777766432 13566788888887777777888888888888888888888888888887663
No 152
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=63.20 E-value=3.2e+02 Score=32.45 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHH
Q 043674 152 EEIDKLQKGILGLQTEKEFAKSSY 175 (891)
Q Consensus 152 ~EI~~LQk~il~LQtEKEa~~lqY 175 (891)
+|+..-+.+.-+..+|+|++.+..
T Consensus 88 tel~~a~~~k~~~e~er~~~~~El 111 (499)
T COG4372 88 TELGTAQGEKRAAETEREAARSEL 111 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 153
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=62.87 E-value=17 Score=32.28 Aligned_cols=40 Identities=18% Similarity=0.294 Sum_probs=24.8
Q ss_pred HHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 043674 336 VDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKE 375 (891)
Q Consensus 336 V~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~ 375 (891)
-+.|+.||..++.|...|+.|+..+-..+..|..|+....
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~ 42 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLR 42 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666666666665543
No 154
>PRK04325 hypothetical protein; Provisional
Probab=62.33 E-value=14 Score=33.32 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=32.7
Q ss_pred HHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 333 DELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 333 DeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
+.+-+.|..||..+..|..-|+.|+..+-..+..|..|+..+..|
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556777888888888888888888888887777777665444
No 155
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=60.87 E-value=1.4e+02 Score=35.46 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhc
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFG 204 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~ 204 (891)
..|+.++..--++-..+-+++-.....|...-++|...|..|..+|++..-|.+|+-
T Consensus 16 ~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 16 IDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778887778888888888888999999999999999999999999999987644
No 156
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=60.15 E-value=64 Score=36.66 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHH
Q 043674 332 IDELVDKVVNLESAVSSQTALVKTLRSETDQLEG 365 (891)
Q Consensus 332 iDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~ 365 (891)
|..|.-+|..|+......+..+.||+.|--+|..
T Consensus 137 V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn 170 (310)
T PF09755_consen 137 VNKLQKKIERLEKEKSAKQEELERLRREKVDLEN 170 (310)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHH
Confidence 5556666666666666666666677666655543
No 157
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=60.05 E-value=1.9e+02 Score=28.74 Aligned_cols=94 Identities=21% Similarity=0.268 Sum_probs=59.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 155 DKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQ 234 (891)
Q Consensus 155 ~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLe 234 (891)
..|...+..+..+-+.....++..-+++..+|.++..++.+...|+. ..=.+...++.+.+.+.+|+
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~-------------~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQK-------------QLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666677777777777888888777777776652 22244567788888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043674 235 EKQEQSLEEAKTEQQRIIEAHEKFIKLRNR 264 (891)
Q Consensus 235 ekq~~s~eeAk~e~eRv~~Ae~klkaLK~e 264 (891)
..+.........+..|.. .++..||..
T Consensus 122 ~~~~~~~tq~~~e~rkke---~E~~kLk~r 148 (151)
T PF11559_consen 122 NQLQQRKTQYEHELRKKE---REIEKLKER 148 (151)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 766655555555554443 344444443
No 158
>PRK10698 phage shock protein PspA; Provisional
Probab=59.57 E-value=1.9e+02 Score=31.02 Aligned_cols=52 Identities=21% Similarity=0.358 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCcc
Q 043674 332 IDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESLIADSDA 383 (891)
Q Consensus 332 iDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L~~ds~~ 383 (891)
-..+..++..|+..+-.+++.+.+|+..+..|+.+|..+...+.+|+....-
T Consensus 94 K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~ 145 (222)
T PRK10698 94 KQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQA 145 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888999999999999999999999999999999888888654443
No 159
>PRK02119 hypothetical protein; Provisional
Probab=59.33 E-value=19 Score=32.49 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=30.2
Q ss_pred HHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 333 DELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 333 DeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
..+-+.|..||..++.|...|+.|+..+-..+..|..|+.....|
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777777777777666664433
No 160
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=59.03 E-value=2.6e+02 Score=34.19 Aligned_cols=27 Identities=15% Similarity=0.382 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhch
Q 043674 173 SSYERGYEKYWEIEDQITEMQAKVCNL 199 (891)
Q Consensus 173 lqYqqsleK~~~LE~qIs~~Qe~v~~L 199 (891)
.++.+++.++..+|.+|..+...+...
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~ 417 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTI 417 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445555555555555555555444433
No 161
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=59.00 E-value=20 Score=35.01 Aligned_cols=61 Identities=26% Similarity=0.391 Sum_probs=48.8
Q ss_pred hhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 043674 301 KSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLE 364 (891)
Q Consensus 301 e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~ 364 (891)
..+|..+++-|++..... ..|=.-|--++||||+.|-.||..++.-++.|.-++--+++-.
T Consensus 14 ~~~v~~lRed~r~SEdrs---a~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKpVT~dV~ 74 (112)
T PF07439_consen 14 NAEVKELREDIRRSEDRS---AASRASMHRRLDELVERVTTLESSVSTLKADVSEMKPVTDDVK 74 (112)
T ss_pred HHHHHHHHHHHHHHHHHh---hhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccchHHHHH
Confidence 456777888888665543 3345567789999999999999999999999999988888754
No 162
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=59.00 E-value=1.5e+02 Score=29.05 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=26.3
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 342 LESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 342 LE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
|+..-.+=..+-.+|..++.++..++..|...+..|
T Consensus 89 l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lL 124 (132)
T PF07926_consen 89 LEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLL 124 (132)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666778888888888888888887776
No 163
>PRK10884 SH3 domain-containing protein; Provisional
Probab=58.72 E-value=1.2e+02 Score=32.39 Aligned_cols=23 Identities=9% Similarity=0.086 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHH
Q 043674 150 ALEEIDKLQKGILGLQTEKEFAK 172 (891)
Q Consensus 150 Ae~EI~~LQk~il~LQtEKEa~~ 172 (891)
+..-+..|+.++..|+++-.-+.
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554443333
No 164
>PLN02939 transferase, transferring glycosyl groups
Probab=58.37 E-value=5.4e+02 Score=33.79 Aligned_cols=43 Identities=19% Similarity=0.367 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhHHHhhhh----HHHHHHHHHHHHHHHHHHhhhhhh
Q 043674 331 KIDELVDKVVNLESAVSSQ----TALVKTLRSETDQLEGHISRLEGE 373 (891)
Q Consensus 331 kiDeLV~KVisLE~~vSsQ----ta~i~RLr~E~deL~~kL~tLEe~ 373 (891)
+++-+.+||--||.-+-.. +++|.--..++++.|..|+.|-++
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (977)
T PLN02939 352 KVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEE 398 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666667777777655433 445555677888888888887544
No 165
>PF14992 TMCO5: TMCO5 family
Probab=58.19 E-value=72 Score=35.78 Aligned_cols=142 Identities=22% Similarity=0.238 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchh--hhccc-h--hh---hhh-hcccccccccccccCchhh
Q 043674 233 LQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDER--EQEQP-W--EE---NEN-KTTAGSELKADLAPQGKSD 303 (891)
Q Consensus 233 Leekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~--eke~~-~--~q---q~l-e~is~lE~~i~~ae~~e~E 303 (891)
|+.+.-+.-+.-..+...|..++..+.+|-.++.+...-.+ +.++. . -+ +.| ..+++||.+-.+. -.-
T Consensus 9 le~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l---~~~ 85 (280)
T PF14992_consen 9 LEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKENEHL---SKS 85 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhh---hhh
Confidence 44444445555566777778888888888777776532101 11111 0 01 111 2234444322222 223
Q ss_pred HHHHHHHHHHHHh----hcCCCccchhhHHHHHHHHHHHHHHhHHHhhhh---HHHHHHH----HHHHHHHHHHHhhhhh
Q 043674 304 VELSSKKIEDQVA----VDSNESLAVTQLVEKIDELVDKVVNLESAVSSQ---TALVKTL----RSETDQLEGHISRLEG 372 (891)
Q Consensus 304 ve~L~eKIke~~E----~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQ---ta~i~RL----r~E~deL~~kL~tLEe 372 (891)
|+.|+.|+-+.+- ++...+=++...-.+.+++.+.++.+|..+... -++|..| +.++.+++++|+.+|+
T Consensus 86 ~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ 165 (280)
T PF14992_consen 86 VQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEE 165 (280)
T ss_pred hhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666655443 222233344444567888888888888766555 3455555 4678899999999999
Q ss_pred hhccc
Q 043674 373 EKESL 377 (891)
Q Consensus 373 ~k~~L 377 (891)
+|+++
T Consensus 166 ekE~~ 170 (280)
T PF14992_consen 166 EKEML 170 (280)
T ss_pred HHHHH
Confidence 88876
No 166
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=57.86 E-value=6.2e+02 Score=34.15 Aligned_cols=90 Identities=17% Similarity=0.237 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 166 TEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAK 245 (891)
Q Consensus 166 tEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~eeAk 245 (891)
.++.-....-..+|+++.+||.+|.++|+++..+.-+.. ...|+..-....+...++...+++.+...++..|.
T Consensus 864 ~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~------e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aq 937 (1294)
T KOG0962|consen 864 NELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVK------ELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQ 937 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH------hhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHH
Confidence 555556667778888899999999888888776632211 22345545555555566666666666555666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 043674 246 TEQQRIIEAHEKFIKL 261 (891)
Q Consensus 246 ~e~eRv~~Ae~klkaL 261 (891)
.....+.+....+...
T Consensus 938 k~~~~ine~~s~l~~~ 953 (1294)
T KOG0962|consen 938 KKRNDINEKVSLLHQI 953 (1294)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6655555555555443
No 167
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=57.21 E-value=5.1e+02 Score=32.89 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHH
Q 043674 301 KSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEG 365 (891)
Q Consensus 301 e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~ 365 (891)
-.||+.|.+.+....-++ ..|.-. ..++...+-.=..+++.+++.|.+|-.-++.+..
T Consensus 264 ~~EiqKL~qQL~qve~EK--~~L~~~-----L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 264 LSEIQKLKQQLLQVEREK--SSLLSN-----LQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred hHHHHHHHHHHHHHhhHH--HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457777777777775555 444333 5666666666667777777877777766655544
No 168
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=56.17 E-value=3e+02 Score=30.00 Aligned_cols=110 Identities=21% Similarity=0.292 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHH--------
Q 043674 149 EALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAA-------- 220 (891)
Q Consensus 149 eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae-------- 220 (891)
+|+-+-.-|...|..++.+-.-+.-....+-++...|+.+...+|++...|..... +|...|+.
T Consensus 2 ~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~--------eaee~~~rL~~~~~~~ 73 (246)
T PF00769_consen 2 EAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQ--------EAEEEKQRLEEEAEMQ 73 (246)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH-----
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 46667777888889999888888888888899999999999999999999865532 22222222
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043674 221 --------TAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFI 266 (891)
Q Consensus 221 --------~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~ 266 (891)
..+......|..|.+.......+|.....++..|+.....-+..+.
T Consensus 74 ~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~ 127 (246)
T PF00769_consen 74 EEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELL 127 (246)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2555666677777777888888888888888888887777776664
No 169
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=55.82 E-value=5.5e+02 Score=32.85 Aligned_cols=18 Identities=39% Similarity=0.518 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhhhhhH
Q 043674 151 LEEIDKLQKGILGLQTEK 168 (891)
Q Consensus 151 e~EI~~LQk~il~LQtEK 168 (891)
..|+..|.+.+..+....
T Consensus 500 ~~e~~~l~~~l~~~~~~~ 517 (908)
T COG0419 500 REEIEELEKELRELEEEL 517 (908)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555444
No 170
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=54.59 E-value=2.5e+02 Score=28.60 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhh
Q 043674 349 QTALVKTLRSETDQLEGHISRLE 371 (891)
Q Consensus 349 Qta~i~RLr~E~deL~~kL~tLE 371 (891)
.......+...+..|++.++.|.
T Consensus 117 k~q~~e~~~~~ve~L~~ql~~L~ 139 (140)
T PF10473_consen 117 KVQLKEESKSAVEMLQKQLKELN 139 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 44455566666666766666553
No 171
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=54.58 E-value=2e+02 Score=28.46 Aligned_cols=48 Identities=13% Similarity=0.213 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 043674 223 VKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQT 270 (891)
Q Consensus 223 ~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~ 270 (891)
+..+.+.++.++.+...+....+.....+..+...++..+.++.++..
T Consensus 75 ~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 75 VERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555556666666666666655543
No 172
>PRK02793 phi X174 lysis protein; Provisional
Probab=54.47 E-value=23 Score=31.85 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=26.7
Q ss_pred HHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 043674 335 LVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKE 375 (891)
Q Consensus 335 LV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~ 375 (891)
+-+.|..||..++.|..-|..|+..+-..+..|..|+....
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~ 46 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLR 46 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666777777777777777666666666666665543
No 173
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=54.46 E-value=48 Score=29.43 Aligned_cols=48 Identities=23% Similarity=0.314 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 043674 328 LVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKE 375 (891)
Q Consensus 328 ~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~ 375 (891)
|-++|.+|-.+|.=+|..|..-+..|-+...+|+.|+..|+.|.+.-.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666555555554444444444444444444444444433
No 174
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=54.12 E-value=4.9e+02 Score=35.04 Aligned_cols=96 Identities=11% Similarity=0.134 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHH
Q 043674 153 EIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSK 232 (891)
Q Consensus 153 EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~k 232 (891)
-|..|...|..|.. .+..++.+|..+......|.+++..-.. + .....+-..+..+...+..
T Consensus 743 ri~el~~~IaeL~~--------------~i~~l~~~l~~l~~r~~~L~~e~~~~Ps-~---~dL~~A~~~l~~A~~~~~~ 804 (1353)
T TIGR02680 743 RIAELDARLAAVDD--------------ELAELARELRALGARQRALADELAGAPS-D---RSLRAAHRRAAEAERQAES 804 (1353)
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhCCC-c---hHHHHHHHHHHHHHHHHHH
Confidence 45555555555554 3455566666666666666666442222 1 1222233455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043674 233 LQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFI 266 (891)
Q Consensus 233 Leekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~ 266 (891)
-..+.....+.+.....++..++..+...-.++.
T Consensus 805 a~~~l~~a~~~l~~a~~~~~~a~~~l~~aaa~l~ 838 (1353)
T TIGR02680 805 AERELARAARKAAAAAAAWKQARRELERDAADLD 838 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5556666666666666666666655555544444
No 175
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=53.41 E-value=3.1e+02 Score=29.25 Aligned_cols=48 Identities=19% Similarity=0.347 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043674 219 AATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFI 266 (891)
Q Consensus 219 ae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~ 266 (891)
...++..++..+..|+..+...........+++.+.+..+...+..+.
T Consensus 61 ~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 61 LKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666677777777776666666666666666666666665555
No 176
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=53.40 E-value=1.7e+02 Score=30.94 Aligned_cols=142 Identities=13% Similarity=0.066 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhcccccccccccc--cCchhhH
Q 043674 227 QDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLA--PQGKSDV 304 (891)
Q Consensus 227 ~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~a--e~~e~Ev 304 (891)
...|..|+..+..+..-+.....+-.+...-...|=..+..|-.- | ..+....++..++....++... ....++.
T Consensus 10 k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~--E-~~~~l~~~l~~~a~~~~~~~~~~~~~a~~e~ 86 (216)
T cd07627 10 KQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSL--E-LSKSLSDLLAALAEVQKRIKESLERQALQDV 86 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--h-cchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666555555555555555555331 1 1223334444444333333322 2455666
Q ss_pred HHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHH-------HHHHHHHHHhhhhhhhc
Q 043674 305 ELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRS-------ETDQLEGHISRLEGEKE 375 (891)
Q Consensus 305 e~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~-------E~deL~~kL~tLEe~k~ 375 (891)
-.|-.-|.++..- .-+|..+-.....+...+.+++..+....+.+.+|.. .+..+...|+.+|....
T Consensus 87 ~~l~~~L~ey~r~----~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~ 160 (216)
T cd07627 87 LTLGVTLDEYIRS----IGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRAS 160 (216)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHH
Confidence 6666677777763 3377888888889999999999999999888888852 33444455555544433
No 177
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.03 E-value=5.4e+02 Score=31.94 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=22.0
Q ss_pred HHHHHHHhHHHHHHhhhhhHHHHHhhhhH
Q 043674 663 IDELLEENLEFWLRFSTSVHQIQKYQSTV 691 (891)
Q Consensus 663 ID~lLEENLeFWlRFStS~hqIQkFqt~~ 691 (891)
..+|.++||-.--=.||-..||--..|-.
T Consensus 600 ~e~l~~~ilklksllstkreqi~tlrtvl 628 (772)
T KOG0999|consen 600 KEALMEQILKLKSLLSTKREQITTLRTVL 628 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888887777888888887666544
No 178
>PRK00295 hypothetical protein; Provisional
Probab=52.53 E-value=25 Score=31.31 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=22.5
Q ss_pred HHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 338 KVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 338 KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
.|..||..++.|...|+.|+..+-..+..|..|+..+..|
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555554433
No 179
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=51.79 E-value=22 Score=40.45 Aligned_cols=73 Identities=22% Similarity=0.202 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 043674 301 KSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGE 373 (891)
Q Consensus 301 e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~ 373 (891)
..+|..++..|..+.-.-++.+-++.+...-|..|--.|-.|+..|+--+.-|..+-.-|-+|+.+|+.||..
T Consensus 83 sstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~ 155 (326)
T PF04582_consen 83 SSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESG 155 (326)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcC
Confidence 4445555556655555555556666777777888888888888888888888888888888889999988876
No 180
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=51.09 E-value=3.3e+02 Score=28.92 Aligned_cols=102 Identities=12% Similarity=0.053 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHH
Q 043674 150 ALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDT 229 (891)
Q Consensus 150 Ae~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~Et 229 (891)
.+..|...+.++..+-+.+-...-+|.+.-.++.+.+.....+-. -.+|.-+-.+......|.++
T Consensus 36 m~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~---------------~G~EdLAr~Al~~k~~~~~~ 100 (219)
T TIGR02977 36 MEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALS---------------KGREDLARAALIEKQKAQEL 100 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------CCCHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544444444444444444444332211 11223344444588889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043674 230 LSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFI 266 (891)
Q Consensus 230 L~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~ 266 (891)
+..|+..+......+..+..++...+.++..++..-.
T Consensus 101 ~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 101 AEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888888888888888888877775444
No 181
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=50.75 E-value=2.8e+02 Score=27.94 Aligned_cols=149 Identities=14% Similarity=0.151 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccc-hhhhhhhccccccccccc--ccC
Q 043674 223 VKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQP-WEENENKTTAGSELKADL--APQ 299 (891)
Q Consensus 223 ~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~-~~qq~le~is~lE~~i~~--ae~ 299 (891)
+..+.+.+.+|+..+.....-+.....|-...-.-...|=..|..+-.. +...+ .+..++..++..-..+.. ...
T Consensus 6 f~~~~~~v~~le~~l~~l~~~~~~~~k~~~~l~~~~~elg~~~~~Ls~~--e~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 83 (218)
T cd07596 6 FEEAKDYILKLEEQLKKLSKQAQRLVKRRRELGSALGEFGKALIKLAKC--EEEVGGELGEALSKLGKAAEELSSLSEAQ 83 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777666555555555554444444444444444434221 11110 122333322222111111 124
Q ss_pred chhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHH-------HHHHHHHHHhhhhh
Q 043674 300 GKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRS-------ETDQLEGHISRLEG 372 (891)
Q Consensus 300 ~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~-------E~deL~~kL~tLEe 372 (891)
...+...+-+-|.++.. ..-+|.++-...+.++..+..++..+....+.+.+|+. .++.+...|..+|.
T Consensus 84 ~~~~~~~~~e~L~~y~~----~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~ 159 (218)
T cd07596 84 ANQELVKLLEPLKEYLR----YCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAES 159 (218)
T ss_pred HHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH
Confidence 45555556666666654 33477888888888888888888888888888877754 55666666666665
Q ss_pred hhccc
Q 043674 373 EKESL 377 (891)
Q Consensus 373 ~k~~L 377 (891)
....+
T Consensus 160 ~~~~~ 164 (218)
T cd07596 160 ALEEA 164 (218)
T ss_pred HHHHH
Confidence 54433
No 182
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=50.15 E-value=6.4e+02 Score=31.99 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCc
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGT 207 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a 207 (891)
.++..=|.+.+|+|..||=+-|.+-+-++-.+.--.+|=+..+-+..=-.-|.+.|+..|
T Consensus 109 qenrk~IEaqrKaIqELQf~NE~lSlKLee~i~en~dL~k~nnaTR~lCNlLKeT~~rsa 168 (786)
T PF05483_consen 109 QENRKIIEAQRKAIQELQFENEKLSLKLEEEIQENKDLRKENNATRHLCNLLKETCQRSA 168 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 445556899999999999999988888888887777777666655433333666666555
No 183
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=49.56 E-value=4.1e+02 Score=29.95 Aligned_cols=104 Identities=15% Similarity=0.208 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhchhhhhccCcccccHHHHHHHHH--
Q 043674 150 ALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQA-------KVCNLQDEFGIGTVIDDNEARTLIAA-- 220 (891)
Q Consensus 150 Ae~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe-------~v~~LqDEf~~~a~IED~EARaLmae-- 220 (891)
++.+++.|.-+ +.+=||-.--||-|++.-++-||..++++.. .+..|... + |+-.|+-.+.
T Consensus 64 l~t~nqrl~~E---~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQa-N------DdLErakRati~ 133 (333)
T KOG1853|consen 64 LETRNQRLTTE---QERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQA-N------DDLERAKRATIY 133 (333)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c------cHHHHhhhhhhh
Confidence 55566665433 2344677778999999999999999987644 44445211 1 2222333322
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043674 221 ------TAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIV 267 (891)
Q Consensus 221 ------~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~ 267 (891)
..+++.-|.++-|+.++. +-..+.+-+.++++++..|++++.-
T Consensus 134 sleDfeqrLnqAIErnAfLESELd----Eke~llesvqRLkdEardlrqelav 182 (333)
T KOG1853|consen 134 SLEDFEQRLNQAIERNAFLESELD----EKEVLLESVQRLKDEARDLRQELAV 182 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777788888876654 3345566778888999999999873
No 184
>PRK00736 hypothetical protein; Provisional
Probab=48.98 E-value=31 Score=30.77 Aligned_cols=41 Identities=15% Similarity=0.292 Sum_probs=25.3
Q ss_pred HHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 337 DKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 337 ~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
+.|..||..+..|..-|+.|+..+-..+..|..|...+..|
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666666666666554433
No 185
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=48.97 E-value=3e+02 Score=30.98 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 222 AVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKL 261 (891)
Q Consensus 222 a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaL 261 (891)
.++.|.++|.....++..+..+.-...+++..+.-|++.+
T Consensus 222 e~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 222 EVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444444444444444444444
No 186
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=48.16 E-value=2e+02 Score=29.28 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043674 222 AVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNR 264 (891)
Q Consensus 222 a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e 264 (891)
.++....++..|..........+......+.........+...
T Consensus 138 ~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (191)
T PF04156_consen 138 SIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEK 180 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444333
No 187
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=47.75 E-value=6.1e+02 Score=31.05 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-------HHHHHHHHHHHHH
Q 043674 147 KEEALEEIDKLQKGILGLQTEKEFAKSSYE-------RGYEKYWEIEDQI 189 (891)
Q Consensus 147 k~eAe~EI~~LQk~il~LQtEKEa~~lqYq-------qsleK~~~LE~qI 189 (891)
++---..|...+..|+.|.-|||--++.+| +...|+.++++++
T Consensus 304 ~e~L~qqV~qs~EKIa~LEqEKEHw~LEaQL~kIKLEKEnkRiadLekev 353 (518)
T PF10212_consen 304 REGLAQQVQQSQEKIAKLEQEKEHWMLEAQLAKIKLEKENKRIADLEKEV 353 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445677777777777778877665554 4445555555555
No 188
>PRK04406 hypothetical protein; Provisional
Probab=47.13 E-value=64 Score=29.40 Aligned_cols=47 Identities=13% Similarity=0.216 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 043674 325 VTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLE 371 (891)
Q Consensus 325 V~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLE 371 (891)
...|.++|++|-.+|.=+|..|-..+..|-+.+.+|+.|+.+|+-|-
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~ 52 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVV 52 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566777777777776666665555555555555555555555543
No 189
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=47.09 E-value=3.2e+02 Score=33.81 Aligned_cols=135 Identities=11% Similarity=0.100 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhcccccccccccccCchhhHHH
Q 043674 227 QDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLAPQGKSDVEL 306 (891)
Q Consensus 227 ~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~ae~~e~Eve~ 306 (891)
.........-..-.........+++..|+.++..+|.+.+-... +.. .... ..++.++.++..++......+.
T Consensus 186 ~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~---~~~-~~~~---~~L~~l~~ql~~a~~~~~~a~a 258 (754)
T TIGR01005 186 AAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMG---NNA-TLAT---QQLAELNTELSRARANRAAAEG 258 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc---CCc-cchH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455566667777888888999999999987764433 111 1111 1233344444444433334444
Q ss_pred HHHHHHHHHhhcCCCc-------------cchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHh
Q 043674 307 SSKKIEDQVAVDSNES-------------LAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHIS 368 (891)
Q Consensus 307 L~eKIke~~E~~s~ss-------------LsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~ 368 (891)
....++.......... -.+.++..++.++..++..|-..+...+-.|..|+.++++++.+|.
T Consensus 259 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~ 333 (754)
T TIGR01005 259 TADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIR 333 (754)
T ss_pred HHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Confidence 4445555544321111 1122223333333333444444555566667777777777776654
No 190
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=46.86 E-value=38 Score=31.48 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCcc-ccchhhHHHHhccC
Q 043674 328 LVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESLIADSDA-TSSADYLSEKLQSG 397 (891)
Q Consensus 328 ~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L~~ds~~-~~~l~~ls~kL~~v 397 (891)
+-.||++.|+.|.-|--+|..--+.-..|..+++.+...=..|+.+..-|-..-+. ..+|..|.+|+..|
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~~v 79 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEEV 79 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34466666666665544433333332333333332222222233333333222222 66677777776543
No 191
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=46.18 E-value=7.3e+02 Score=31.47 Aligned_cols=30 Identities=23% Similarity=0.230 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYER 177 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqq 177 (891)
-+-+++|+..++.+.-|-..+++..=+.+.
T Consensus 94 r~~~~~~dr~~~~~~~l~~~q~a~~~~e~~ 123 (716)
T KOG4593|consen 94 RNYEAEVDRKHKLLTRLRQLQEALKGQEEK 123 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777777766666666555443
No 192
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.62 E-value=3.9e+02 Score=33.07 Aligned_cols=47 Identities=19% Similarity=0.319 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 331 KIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 331 kiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
|=...+.+|..||+.+-+....+.+-+.|++-+...-..+-+.++++
T Consensus 101 kE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~ 147 (772)
T KOG0999|consen 101 KEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAV 147 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 44556666666666666666666666666666555555554444433
No 193
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=44.92 E-value=5.7e+02 Score=29.89 Aligned_cols=44 Identities=7% Similarity=0.114 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043674 223 VKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFI 266 (891)
Q Consensus 223 ~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~ 266 (891)
+..+...|..|+.++......-....-++..++.++.+|+..+.
T Consensus 249 ~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~ 292 (498)
T TIGR03007 249 NSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKE 292 (498)
T ss_pred CCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Confidence 34455555556555555554444455555555555555555543
No 194
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=44.67 E-value=6.2e+02 Score=30.24 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043674 218 IAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRF 265 (891)
Q Consensus 218 mae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~ 265 (891)
+.+.++++....|+.++.++..+..+-.....+|.+++..+..|..+.
T Consensus 63 kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 63 KLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344567777788888888888888888888888888888887776554
No 195
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.65 E-value=6.3e+02 Score=30.31 Aligned_cols=37 Identities=35% Similarity=0.437 Sum_probs=20.9
Q ss_pred chhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHH
Q 043674 324 AVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSET 360 (891)
Q Consensus 324 sV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~ 360 (891)
++.++.+|+.-|-+||=+|.+--+.-.+-++-+.+.-
T Consensus 263 ~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~ 299 (446)
T KOG4438|consen 263 AMVELQEKAKILEEKVTNLQTIEKELKALLKKISSDG 299 (446)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666666666666666655555555554444444
No 196
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=44.11 E-value=3.6e+02 Score=27.41 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=5.4
Q ss_pred HHHHHHHHHHhhh
Q 043674 153 EIDKLQKGILGLQ 165 (891)
Q Consensus 153 EI~~LQk~il~LQ 165 (891)
|+..++..+..++
T Consensus 82 e~~~~~~~l~~l~ 94 (191)
T PF04156_consen 82 ELSELQQQLQQLQ 94 (191)
T ss_pred hHHhHHHHHHHHH
Confidence 4444444444333
No 197
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=44.06 E-value=1.6e+02 Score=26.71 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043674 223 VKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFI 266 (891)
Q Consensus 223 ~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~ 266 (891)
.-....+|.+|..+.............|+..++.++.+|+..+.
T Consensus 28 el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 28 ELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33456788888888888889999999999999999999987654
No 198
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=43.33 E-value=4.5e+02 Score=33.13 Aligned_cols=47 Identities=28% Similarity=0.209 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043674 222 AVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVN 268 (891)
Q Consensus 222 a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l 268 (891)
++.+=...|..|+++++...+.|..+.+|+++|.++-+.|.+.+..+
T Consensus 573 ~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 573 QKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566666666666777777777777777777776655533
No 199
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=43.04 E-value=3.8e+02 Score=27.32 Aligned_cols=142 Identities=12% Similarity=0.091 Sum_probs=64.2
Q ss_pred HHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043674 187 DQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFI 266 (891)
Q Consensus 187 ~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~ 266 (891)
.++..++..+... ++.|.+.-+- ...-......+|.++|..=..++.....-+.....-+...++++..+..++.
T Consensus 20 ~~l~k~~~ql~~k-e~lge~L~~i----DFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~ 94 (177)
T PF13870_consen 20 HQLAKLEEQLRQK-EELGEGLHLI----DFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELE 94 (177)
T ss_pred HHHHHHHHHHHHH-HHhcCcccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444 4555444321 2223334555555555444444444444444444444444444444443333
Q ss_pred ccccchhhhccchhhhhhhcccccccccccccCchhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHh
Q 043674 267 VNQTDEREQEQPWEENENKTTAGSELKADLAPQGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAV 346 (891)
Q Consensus 267 ~l~~~~~eke~~~~qq~le~is~lE~~i~~ae~~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~v 346 (891)
.+.. .+..+-+.+..+..++.. ...+...++..+.++-... ..+.+..+-.=|+.+++.|-.|+..|
T Consensus 95 ~l~~--------~l~~~~~~~~~~r~~l~~---~k~~r~k~~~~~~~l~~~~--~~~~~P~ll~Dy~~~~~~~~~l~~~i 161 (177)
T PF13870_consen 95 RLKQ--------ELKDREEELAKLREELYR---VKKERDKLRKQNKKLRQQG--GLLGVPALLRDYDKTKEEVEELRKEI 161 (177)
T ss_pred HHHH--------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhc--CCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3222 000111122222222222 2344444555555555544 55577777656888888777776544
No 200
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=42.43 E-value=8.5e+02 Score=31.20 Aligned_cols=37 Identities=30% Similarity=0.325 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043674 232 KLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVN 268 (891)
Q Consensus 232 kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l 268 (891)
.+...++......+...+++..++.+++.+...+..+
T Consensus 312 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l 348 (908)
T COG0419 312 ALLEELEELLEKLKSLEERLEKLEEKLEKLESELEEL 348 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666666666666666666666555
No 201
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=42.37 E-value=2.4e+02 Score=34.17 Aligned_cols=106 Identities=11% Similarity=0.102 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhccccccccccccc
Q 043674 222 AVKSCQDTLSKLQEKQEQ---SLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLAP 298 (891)
Q Consensus 222 a~ksc~EtL~kLeekq~~---s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~ae 298 (891)
.|....-.|+.|+.+.+. -..+|+...+.++.++++-++|+....+...-++.... --+.-+..++.|..+| +
T Consensus 265 ~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~-K~~~~~g~l~kl~~ei---e 340 (622)
T COG5185 265 FVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQ-KSQEWPGKLEKLKSEI---E 340 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHhcchHHHHHHHHH---H
Confidence 445555555555544333 23478899999999999999999877766541110000 0012223444443332 2
Q ss_pred CchhhHHHHHHHHHHHHhhcCCCccchhhHHHH
Q 043674 299 QGKSDVELSSKKIEDQVAVDSNESLAVTQLVEK 331 (891)
Q Consensus 299 ~~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEk 331 (891)
..+.+|++|+.++-++-.---+.-++..+.-..
T Consensus 341 ~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~m 373 (622)
T COG5185 341 LKEEEIKALQSNIDELHKQLRKQGISTEQFELM 373 (622)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHH
Confidence 336677777777766655444455555544333
No 202
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=42.36 E-value=6.2e+02 Score=29.91 Aligned_cols=82 Identities=28% Similarity=0.527 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-----------HHHHHHHHHHHHH----HHHhhchhhhhccCccccc
Q 043674 147 KEEALEEIDKLQKGILGLQTEKEFAKSSYERGY-----------EKYWEIEDQITEM----QAKVCNLQDEFGIGTVIDD 211 (891)
Q Consensus 147 k~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsl-----------eK~~~LE~qIs~~----Qe~v~~LqDEf~~~a~IED 211 (891)
......|+..+++....|+..=|..+.+|++-+ -||..||.+++++ |-++..|+.+++ .+
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa---~~-- 288 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELA---SM-- 288 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hH--
Confidence 356677777777777777777777777666443 4667788887765 556666665533 11
Q ss_pred HHHHHHHHH--------HHHHHHHHHHHHHH
Q 043674 212 NEARTLIAA--------TAVKSCQDTLSKLQ 234 (891)
Q Consensus 212 ~EARaLmae--------~a~ksc~EtL~kLe 234 (891)
|.|.-=+. -.+-+|+-.|++||
T Consensus 289 -EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 289 -EEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred -HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 11110000 16677888888888
No 203
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=42.25 E-value=2.4e+02 Score=32.38 Aligned_cols=204 Identities=18% Similarity=0.186 Sum_probs=111.7
Q ss_pred hhhhccCCC-h-------HHHHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccC
Q 043674 138 AVSLKSGLN-K-------EEALEEIDKLQKGILGLQTEKEFA---KSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIG 206 (891)
Q Consensus 138 ~~~~~sgLs-k-------~eAe~EI~~LQk~il~LQtEKEa~---~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~ 206 (891)
......|+. + .....||+.|--+..++++.|+.+ ++.|----.-++.|++++.-++-+-- .|--
T Consensus 79 yEm~G~G~~~kETp~qK~qRll~Ev~eL~~eve~ik~dk~~a~Eek~t~~l~A~vla~lkk~l~al~leq~-----lGk~ 153 (371)
T KOG3958|consen 79 YEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKIKTDKESATEEKLTPVLLAKVLAALKKQLVALHLEQL-----LGKD 153 (371)
T ss_pred eeeeccCcCcccCHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHH-----hCCC
Confidence 344566774 2 234557777766667777666654 45666666677888888776653311 1211
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccc
Q 043674 207 TVIDDNEARTLIAATAVKSCQDTLSK--------LQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQP 278 (891)
Q Consensus 207 a~IED~EARaLmae~a~ksc~EtL~k--------Leekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~ 278 (891)
+ +-| -|++ ..-+-|+..+=.. =...++.+ -||..++..+..|..-++-... +..+
T Consensus 154 a-tp~-~~~v---k~ll~q~E~~k~sg~~t~~p~p~~d~s~~--------akVA~LE~Rlt~lE~vvg~~~d----~~~~ 216 (371)
T KOG3958|consen 154 A-TPD-GALV---KRLLLQLEATKNSGKTTGTPRPEQDFSQA--------AKVAELEKRLTELETVVGCDQD----AQNP 216 (371)
T ss_pred C-CCc-HHHH---HHHHHHHHhhcccCcccCCCCCCccHHHH--------HHHHHHHHHHHHHHHHHcCCcc----ccCc
Confidence 1 111 1111 1111111111000 00111111 2334444444444444442211 1222
Q ss_pred ----hhhhh-hhcccccccccccc-----cCchhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhh
Q 043674 279 ----WEENE-NKTTAGSELKADLA-----PQGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSS 348 (891)
Q Consensus 279 ----~~qq~-le~is~lE~~i~~a-----e~~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSs 348 (891)
...-| ++++..|..+++-+ .+.++.++.+--|+.+.-|.. ..+.-=++.-.||+||.+.|---+-.+|.
T Consensus 217 lsa~~~~a~vletVe~L~~k~s~l~~~~ld~vEqRL~s~lgK~~~IaEk~-~~s~~Da~~d~KV~elye~~qrw~pi~st 295 (371)
T KOG3958|consen 217 LSAGLQGACVLETVELLQAKVSALDLAVLDQVEQRLQSVLGKVNEIAEKH-KASVEDADTDSKVHELYETIQRWSPIAST 295 (371)
T ss_pred hhhccCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhh-ccccccchhhhhHHHHHHHHHhhhhHHHh
Confidence 11134 36777776665555 377889999999988877643 34444556677899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHH
Q 043674 349 QTALVKTLRSETDQLEG 365 (891)
Q Consensus 349 Qta~i~RLr~E~deL~~ 365 (891)
--..|+||.. +..||+
T Consensus 296 LP~~V~rl~a-l~~LHe 311 (371)
T KOG3958|consen 296 LPELVQRLVA-LKQLHE 311 (371)
T ss_pred hHHHHHHHHH-HHHHHH
Confidence 9999998875 344444
No 204
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=42.07 E-value=59 Score=32.24 Aligned_cols=112 Identities=24% Similarity=0.446 Sum_probs=72.6
Q ss_pred hhHHHHHhh-hhHHHHHHHHHHHHHhhhhcCCccccccccccchHH---HHHHhhhhhhhHhhhhcccchHHHhhhhhhc
Q 043674 680 SVHQIQKYQ-STVQDLKAELARLKDKKKQEGSAKQRYTKSDARPIY---KHLREIQTELTLWLENNEVLKDEVQDRYTSL 755 (891)
Q Consensus 680 S~hqIQkFq-t~~~dLq~El~kl~~~~~~eg~~~~~~~kse~~pi~---khLREi~tEL~vWlE~nalLk~ELq~RfsSL 755 (891)
++.+++... ..++.||+-+.+|....--+. +-..++| .||||.+-=|+ |.--+|.+-|..=.--=
T Consensus 4 ~l~kLkE~He~ev~glq~K~~~L~~erc~Da--------qrleel~~knqqLreQqk~L~---e~i~~LE~RLRaGlCDR 72 (120)
T PF10482_consen 4 LLNKLKEIHEKEVQGLQNKLLELKKERCLDA--------QRLEELFSKNQQLREQQKTLH---ENIKVLENRLRAGLCDR 72 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHcccH--------HHHHHHHcccHHHHHHHHHHH---HHHHHHHHHHhcccchH
Confidence 344444443 478888888888864432221 1122333 36888776554 55556666665444444
Q ss_pred cchHHHHHHHHccccccccccccccccchh-hhhhhhhhhhhhhhhhhhHHHHH
Q 043674 756 CNIQEEVSRVANASASASAKAEDAELSNYQ-AAKFQGEIMNMKQENKKIADELH 808 (891)
Q Consensus 756 C~IQEEIs~al~~~~~~~~~~~~~~ft~YQ-AAKFQGEVLNMKQENnKVa~ELQ 808 (891)
|-+-+|.++--...-+ ..++.+-| -..+-+|.-+.+.||.+...||+
T Consensus 73 C~VtqE~akK~qqefe------~s~~qsLq~i~~L~nE~n~L~eEN~~L~eElk 120 (120)
T PF10482_consen 73 CTVTQELAKKKQQEFE------SSHLQSLQHIFELTNEMNTLKEENKKLKEELK 120 (120)
T ss_pred HHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 6678888776554333 24788888 88999999999999999999985
No 205
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=42.02 E-value=92 Score=29.79 Aligned_cols=54 Identities=22% Similarity=0.362 Sum_probs=45.2
Q ss_pred chhhHHHHHHHHHHHHHHhHHHhhhh--HHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 324 AVTQLVEKIDELVDKVVNLESAVSSQ--TALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 324 sV~e~AEkiDeLV~KVisLE~~vSsQ--ta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
.+..++++++..-..|..+|..+-+. ...+.+|+.++.++...++.++..-..+
T Consensus 36 ~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 36 DIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45667778888889999999999998 8999999999999999999888775443
No 206
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=41.91 E-value=1.5e+02 Score=35.23 Aligned_cols=38 Identities=21% Similarity=0.120 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043674 229 TLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFI 266 (891)
Q Consensus 229 tL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~ 266 (891)
.+..|+.-...=+-||++...|+.+||.+++.|+.-..
T Consensus 351 ~~eeLESIVRiKqAEA~MFQ~kAdEARrEAE~LqrI~~ 388 (446)
T PF07227_consen 351 QIEELESIVRIKQAEAKMFQLKADEARREAEGLQRIAL 388 (446)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666678999999999999999999997655
No 207
>PF15294 Leu_zip: Leucine zipper
Probab=41.90 E-value=3e+02 Score=31.10 Aligned_cols=104 Identities=14% Similarity=0.211 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHH
Q 043674 153 EIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSK 232 (891)
Q Consensus 153 EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~k 232 (891)
||.+||.+--.|..==-.+-.+|-.++.==..|+.+|.++|...+..++. .. ..--+..+..+..+++.
T Consensus 133 Ei~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k---~~--------~~~~~q~l~dLE~k~a~ 201 (278)
T PF15294_consen 133 EIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGK---KD--------LSFKAQDLSDLENKMAA 201 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---cc--------ccccccchhhHHHHHHH
Confidence 44444444444433333333356666666667777777777755544321 00 01233466677777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 043674 233 LQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQT 270 (891)
Q Consensus 233 Leekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~ 270 (891)
|+.+++.+ +.......+..++.+..=|+++.++.+
T Consensus 202 lK~e~ek~---~~d~~~~~k~L~e~L~~~KhelL~~Qe 236 (278)
T PF15294_consen 202 LKSELEKA---LQDKESQQKALEETLQSCKHELLRVQE 236 (278)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 77666655 333444556677777777777777766
No 208
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=41.35 E-value=5.9e+02 Score=29.06 Aligned_cols=91 Identities=18% Similarity=0.284 Sum_probs=59.8
Q ss_pred hhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcccccC
Q 043674 301 KSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESLIAD 380 (891)
Q Consensus 301 e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L~~d 380 (891)
-++.+....+|.+.|+. .-++-.++|++=++++.+=.++...+..+.-++.++.++...|..|..........
T Consensus 185 a~eaqe~he~m~k~~~~-------~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~~~ 257 (294)
T COG1340 185 ANEAQEYHEEMIKLFEE-------ADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRR 257 (294)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777773 23556678888888888888888888888888888888888888777554433211
Q ss_pred Ccc---ccchhhHHHHhccCC
Q 043674 381 SDA---TSSADYLSEKLQSGK 398 (891)
Q Consensus 381 s~~---~~~l~~ls~kL~~vk 398 (891)
... .-....+-+||....
T Consensus 258 ~~~ee~kera~ei~EKfk~Ge 278 (294)
T COG1340 258 EKREELKERAEEIYEKFKRGE 278 (294)
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 111 234455666665544
No 209
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=40.66 E-value=36 Score=42.13 Aligned_cols=101 Identities=11% Similarity=0.129 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 163 GLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLE 242 (891)
Q Consensus 163 ~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~e 242 (891)
.+..+-.+....|-+-+.|+.++|+.+...+.++..+........ .-..+...........++.+|++++....+
T Consensus 14 Dln~~~~~fqr~f~~ev~r~de~erkL~~le~~I~k~~~~~~~~~-----~~~~~~~~~~i~~le~~l~~le~~l~e~~~ 88 (759)
T PF01496_consen 14 DLNEDVSAFQRKFVNEVRRCDEMERKLRFLEEEIKKLKIPLPEKN-----DKPDAPKPKEIDELEEELEELEEELRELNE 88 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ECccchhHHHHHhhhccccHHHHHHHHHHHHHHHHHhcCcccccc-----cccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444456777788888999999888888888754433111 112222222444555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043674 243 EAKTEQQRIIEAHEKFIKLRNRFIVN 268 (891)
Q Consensus 243 eAk~e~eRv~~Ae~klkaLK~e~~~l 268 (891)
....+.+++.+++++...|+.....+
T Consensus 89 ~~e~L~~~~~~L~E~~~~L~~~~~~l 114 (759)
T PF01496_consen 89 NLEKLEEELNELEEEKNVLEEEIEFL 114 (759)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555444444
No 210
>PRK02793 phi X174 lysis protein; Provisional
Probab=40.65 E-value=1.1e+02 Score=27.65 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 043674 327 QLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLE 371 (891)
Q Consensus 327 e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLE 371 (891)
++.++|.+|-.+|.=.|..|...+.-|-+.+.+|+.|+.+|+-|-
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~ 49 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLT 49 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777766665555555544444444444444444443
No 211
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=39.89 E-value=1.7e+02 Score=28.93 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhHHHhh
Q 043674 331 KIDELVDKVVNLESAVS 347 (891)
Q Consensus 331 kiDeLV~KVisLE~~vS 347 (891)
.+++|-.-|.+|-.++-
T Consensus 97 ~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 97 EVEELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 212
>PRK00846 hypothetical protein; Provisional
Probab=39.42 E-value=56 Score=30.20 Aligned_cols=43 Identities=19% Similarity=0.086 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 043674 332 IDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEK 374 (891)
Q Consensus 332 iDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k 374 (891)
-+.+-..|..||..+..|..-|+.|+..+-..+..|..|....
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql 50 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELI 50 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777777777777777777777663
No 213
>PRK00295 hypothetical protein; Provisional
Probab=39.26 E-value=1.1e+02 Score=27.35 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=25.1
Q ss_pred HHHHHHHHHHH-------HhHHHhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 043674 330 EKIDELVDKVV-------NLESAVSSQTALVKTLRSETDQLEGHISRLE 371 (891)
Q Consensus 330 EkiDeLV~KVi-------sLE~~vSsQta~i~RLr~E~deL~~kL~tLE 371 (891)
++|.+|-.+|. .|-..|..|+.+|.+|+.....|..+|++++
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555544 4445566666666666666666666666655
No 214
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=39.13 E-value=7.1e+02 Score=30.93 Aligned_cols=16 Identities=13% Similarity=0.362 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 043674 180 EKYWEIEDQITEMQAK 195 (891)
Q Consensus 180 eK~~~LE~qIs~~Qe~ 195 (891)
+++.+|+.++..+|.+
T Consensus 237 ~~L~~l~~ql~~a~~~ 252 (754)
T TIGR01005 237 QQLAELNTELSRARAN 252 (754)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666766666665543
No 215
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=38.67 E-value=2.3e+02 Score=25.81 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhh
Q 043674 305 ELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRL 370 (891)
Q Consensus 305 e~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tL 370 (891)
..|..||....+ |+.-+-..|++|..+...|...-..-.....+|+.+-..-+.+|+.|
T Consensus 7 ~~LE~ki~~ave-------ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 7 EQLEEKIQQAVE-------TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555 22233334555555555555444445555555555555555555544
No 216
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=38.27 E-value=9.5e+02 Score=30.58 Aligned_cols=47 Identities=21% Similarity=0.415 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhHHHhhhhHHHHHHHHHHH-----------------HHHHHHHhhhhhhhccc
Q 043674 331 KIDELVDKVVNLESAVSSQTALVKTLRSET-----------------DQLEGHISRLEGEKESL 377 (891)
Q Consensus 331 kiDeLV~KVisLE~~vSsQta~i~RLr~E~-----------------deL~~kL~tLEe~k~~L 377 (891)
..|.|-+-++..-.++..|.++|.+||.-| ..|.+.++-|++|+++|
T Consensus 198 e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L 261 (739)
T PF07111_consen 198 EADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDAL 261 (739)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888889999999999999999999887 45566778888888888
No 217
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.79 E-value=1e+03 Score=30.85 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 332 IDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 332 iDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
++.+-+++-.|+.+.-|.-.+|+-++....+|.+-+.+..=.|..|
T Consensus 544 rq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~ 589 (1118)
T KOG1029|consen 544 RQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEEL 589 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555544444433
No 218
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=37.67 E-value=4.6e+02 Score=26.79 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNL 199 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~L 199 (891)
..|..||+.-.+.|..+|+-+-.+..-|-+.-.=+..-+.-+.+ .+++.+
T Consensus 11 ~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~e--ae~k~~ 60 (136)
T PF11570_consen 11 EAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKE--AEIKQD 60 (136)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHhccc
Confidence 45888999999999999988877776676655555555555555 444443
No 219
>PRK02119 hypothetical protein; Provisional
Probab=37.45 E-value=1.2e+02 Score=27.57 Aligned_cols=46 Identities=15% Similarity=0.178 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 043674 327 QLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEG 372 (891)
Q Consensus 327 e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe 372 (891)
.|-++|+.|-.+|.=.|..|...+.-|-+.+.+|+.|+.+|+-|-+
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777766666655555555555555555555555533
No 220
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=37.34 E-value=4.4e+02 Score=26.41 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 043674 332 IDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEG 372 (891)
Q Consensus 332 iDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe 372 (891)
+++|-+++-.||..|..-.-+-++|+.+.++|+..|..+=.
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78888888899999988889999999999999999886543
No 221
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.19 E-value=72 Score=29.31 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q 043674 332 IDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISR 369 (891)
Q Consensus 332 iDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~t 369 (891)
|++|-+|=-+|-.+++.++...+-|.+|++.|+..-+.
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~ 64 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNG 64 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666777777777777777666544333
No 222
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=36.99 E-value=4.2e+02 Score=28.98 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 177 RGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHE 256 (891)
Q Consensus 177 qsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~ 256 (891)
+.++-+.+.+.-|.+..++...|.+|+..+++ ++++-..-|..|+..++.+..+-....+-+....+
T Consensus 22 ~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~e-------------eLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e 88 (230)
T PF10146_consen 22 QEVESLENEEKCLEEYRKEMEELLQERMAHVE-------------ELRQINQDINTLENIIKQAESERNKRQEKIQRLYE 88 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666666655332221 34444455555555555555555555555555556
Q ss_pred HHHHHHHhhhcc
Q 043674 257 KFIKLRNRFIVN 268 (891)
Q Consensus 257 klkaLK~e~~~l 268 (891)
++..||.++..+
T Consensus 89 ey~~Lk~~in~~ 100 (230)
T PF10146_consen 89 EYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHH
Confidence 666666555543
No 223
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=36.87 E-value=1e+03 Score=30.41 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 043674 222 AVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQ 269 (891)
Q Consensus 222 a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~ 269 (891)
.-..+.+|+-.|++......--+--+.-|+..+...+-=-..++.+..
T Consensus 243 Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kv 290 (739)
T PF07111_consen 243 EREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKV 290 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 446788899999999998888888888999888887766666776654
No 224
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=36.79 E-value=8.2e+02 Score=29.38 Aligned_cols=115 Identities=14% Similarity=0.105 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHH
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKY-----WEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATA 222 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~-----~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a 222 (891)
.++..|+..|+..|..++.+|.... +-+.-..++ ..|...+..+...+..-++.+- -++.+ --.|.|+.+..
T Consensus 119 ~e~~~El~~l~~~l~~l~~~~~~~~-~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~-~~~~~-fl~rtl~~e~~ 195 (511)
T PF09787_consen 119 QELDQELRRLRRQLEELQNEKSRIL-SDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAI-TAVVE-FLKRTLKKEIE 195 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccC-chhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHH-HHHHH-HHHHHHHHHHH
Confidence 4577788888888887765553332 222222233 3333333333333322211100 00000 01344555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043674 223 VKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFI 266 (891)
Q Consensus 223 ~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~ 266 (891)
++.+.+.+. .....-....++....+.+.-++....+.+.+|.
T Consensus 196 ~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~ 238 (511)
T PF09787_consen 196 RQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQ 238 (511)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 666666555 3333334444555555555555555555555554
No 225
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=36.73 E-value=3.5e+02 Score=28.74 Aligned_cols=48 Identities=10% Similarity=0.239 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Q 043674 331 KIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESLI 378 (891)
Q Consensus 331 kiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L~ 378 (891)
....+...+..|+..+-.+...|..|+..+..|+.+|..+.-.+..|+
T Consensus 93 ~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ 140 (219)
T TIGR02977 93 EKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALA 140 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777777777777777777777777777766665553
No 226
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=36.72 E-value=3.5e+02 Score=28.05 Aligned_cols=145 Identities=14% Similarity=0.143 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhcccccccccccc--cC
Q 043674 222 AVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLA--PQ 299 (891)
Q Consensus 222 a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~a--e~ 299 (891)
.+..+.+-+..|+.++.....-+.....+-.+.-.-+..|-..|..+-.. |.. ..+..++..++..-..+..+ ..
T Consensus 25 ~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~--E~~-~~l~~~l~~l~~~~~~~~~~~~~~ 101 (236)
T PF09325_consen 25 WFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKS--EEE-KSLSEALSQLAEAFEKISELLEEQ 101 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cCC-chhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777776666666666666655555555555544331 111 11222222222221111111 12
Q ss_pred chhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 043674 300 GKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGE 373 (891)
Q Consensus 300 ~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~ 373 (891)
...+...+..-|.++.- ..-+|.++-.+.+.+......++..+.+..+.+++|+.....-..++..++.+
T Consensus 102 a~~~~~~l~~~L~ey~~----~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~e 171 (236)
T PF09325_consen 102 ANQEEETLGEPLREYLR----YIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENE 171 (236)
T ss_pred HHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHH
Confidence 34444444555555544 23367777777777777777777777777777777766522223444444433
No 227
>PRK04325 hypothetical protein; Provisional
Probab=36.67 E-value=1.2e+02 Score=27.58 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHHHhHH-------HhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 043674 326 TQLVEKIDELVDKVVNLES-------AVSSQTALVKTLRSETDQLEGHISRLE 371 (891)
Q Consensus 326 ~e~AEkiDeLV~KVisLE~-------~vSsQta~i~RLr~E~deL~~kL~tLE 371 (891)
-.|.++|.+|-.+|.=.|. .|..|+.+|.+|...+.-|..+|+.++
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666666666655554 455556666666666666666665554
No 228
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=36.66 E-value=3.7e+02 Score=25.31 Aligned_cols=97 Identities=13% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhchhhhhccCcccccHHHHHHHHHH---HHHHHH
Q 043674 154 IDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQI---TEMQAKVCNLQDEFGIGTVIDDNEARTLIAAT---AVKSCQ 227 (891)
Q Consensus 154 I~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qI---s~~Qe~v~~LqDEf~~~a~IED~EARaLmae~---a~ksc~ 227 (891)
++.+...+-.|+.+ ++.....+..|+.++ ..+.+++..|.+.....-.|- .++.... +...+.
T Consensus 1 ~q~~~~~~q~l~~~-------~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG----~vfv~~~~~ea~~~Le 69 (105)
T cd00632 1 VQEQLAQLQQLQQQ-------LQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVG----NVLVKQEKEEARTELK 69 (105)
T ss_pred ChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhh----hHHhhccHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 228 DTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKL 261 (891)
Q Consensus 228 EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaL 261 (891)
..+..|+..++.....-......+.+++.++..|
T Consensus 70 ~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 70 ERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 229
>PRK10869 recombination and repair protein; Provisional
Probab=36.29 E-value=62 Score=38.97 Aligned_cols=74 Identities=20% Similarity=0.257 Sum_probs=0.0
Q ss_pred Cccc-ccccCcchhhhhhHHHHHHHHhhcHHHHHHhHHH---HhhhhhhHHHHHHHHHHHhhhh--ccchHHHHHHHHhh
Q 043674 486 PNWR-MLSSGLEDREKILLEEYTSVLHNYTDVRRKLSVM---EKKNRDRFIELALQIRELENAV--AFRDEEIHALRQKL 559 (891)
Q Consensus 486 ~~wq-l~~~GledrEKiLL~EYTsvLrNYKdvk~kL~ev---EkKNqd~~~E~~lqirELk~An--a~KDeEI~sLr~~l 559 (891)
|.-+ .+++..-+- +-++.+|....+.|++++++|.++ +....+.+..+.-|+.||..|+ .--|+++..-++.|
T Consensus 139 ~~~~~~lLD~~~~~-~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L 217 (553)
T PRK10869 139 PEHQKTLLDAYANE-TSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRL 217 (553)
T ss_pred HHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q ss_pred c
Q 043674 560 G 560 (891)
Q Consensus 560 ~ 560 (891)
+
T Consensus 218 ~ 218 (553)
T PRK10869 218 A 218 (553)
T ss_pred H
No 230
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=36.05 E-value=1.7e+02 Score=28.47 Aligned_cols=83 Identities=12% Similarity=0.361 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHhhchhhhhccCcccccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 043674 175 YERGYEKYWEIEDQITEM-------QAKVCNLQDEFGIGTVIDDNEARTLIAATAV--KSCQDTLSKLQEKQEQSLEEAK 245 (891)
Q Consensus 175 YqqsleK~~~LE~qIs~~-------Qe~v~~LqDEf~~~a~IED~EARaLmae~a~--ksc~EtL~kLeekq~~s~eeAk 245 (891)
+|.--+=|.-|-.+|..+ ++++-..-..|+ |..+...|.+.++-.... +++..-+.-|-..+.--.++..
T Consensus 7 Wq~w~aEYe~LKEEi~~l~~~~~~~~e~l~~i~r~f~-g~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l~RRiDYV~~Ni~ 85 (99)
T PF13758_consen 7 WQTWEAEYEGLKEEIEALPEDDDATREDLLRIRRDFG-GSLVTEKEIKEILGEGQGITRTREQVVDVLSRRIDYVQQNIE 85 (99)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHhcC-cccccHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555 445555556777 444445688888877766 8899999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 043674 246 TEQQRIIEAHEKF 258 (891)
Q Consensus 246 ~e~eRv~~Ae~kl 258 (891)
.+.+|+..|+.++
T Consensus 86 tleKql~~aE~kl 98 (99)
T PF13758_consen 86 TLEKQLEAAENKL 98 (99)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999875
No 231
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=35.60 E-value=4.6e+02 Score=27.91 Aligned_cols=123 Identities=11% Similarity=0.068 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhcccccccccccc--cCchhhHH
Q 043674 228 DTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLA--PQGKSDVE 305 (891)
Q Consensus 228 EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~a--e~~e~Eve 305 (891)
.-|..|+..+..+..-+...-.+-.+.-.-+..|=..+..|-.- | +.+.+.+++..++....+|..+ .+...+.-
T Consensus 19 ~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~--E-~~~~Ls~al~~la~~~~ki~~~~~~qa~~d~~ 95 (224)
T cd07623 19 QQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNC--E-EHTSLSRALSQLAEVEEKIEQLHGEQADTDFY 95 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--c-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444444444444444444444321 1 1123334555555554444444 35677888
Q ss_pred HHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHH
Q 043674 306 LSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLR 357 (891)
Q Consensus 306 ~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr 357 (891)
.+.+-|.++...- . +|.++-.....+.....+++..+....+.+.+|.
T Consensus 96 ~l~e~L~eY~r~i--~--svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~ 143 (224)
T cd07623 96 ILAELLKDYIGLI--G--AIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLE 143 (224)
T ss_pred HHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888843 3 6777777888888888888888888888877764
No 232
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=35.46 E-value=1.2e+02 Score=33.40 Aligned_cols=75 Identities=25% Similarity=0.380 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhcCCCccc----hhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 303 DVELSSKKIEDQVAVDSNESLA----VTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 303 Eve~L~eKIke~~E~~s~ssLs----V~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
+++.+++.|+..+=.--=.+|+ ..||.+.+.+|-+|.-.+-..-..--....+|..+.++++.+|+.||.++..|
T Consensus 104 D~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~L 182 (290)
T COG4026 104 DVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRL 182 (290)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 233
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=34.81 E-value=1.1e+02 Score=29.61 Aligned_cols=49 Identities=20% Similarity=0.356 Sum_probs=40.9
Q ss_pred chhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 043674 324 AVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEG 372 (891)
Q Consensus 324 sV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe 372 (891)
.|.+|-+++.+++..|..|-..+..--++=.+|+.|++.|..+|..++.
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777788888888888888888888888999999999888888876
No 234
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=34.73 E-value=4.5e+02 Score=29.74 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043674 235 EKQEQSLEEAKTEQQRIIEAHEKFIKLRNR 264 (891)
Q Consensus 235 ekq~~s~eeAk~e~eRv~~Ae~klkaLK~e 264 (891)
-++-...++......++..+...+..|++.
T Consensus 106 ~~l~~~~~e~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 106 LELIEFQEERDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333344444444455555555555555543
No 235
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=34.54 E-value=7.7e+02 Score=28.38 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------hhhhhccCcc--c-----ccHHH
Q 043674 150 ALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCN--------LQDEFGIGTV--I-----DDNEA 214 (891)
Q Consensus 150 Ae~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~--------LqDEf~~~a~--I-----ED~EA 214 (891)
|...+...+.+...-..+=++..+|+|.-+=-..-|+++|..-+.=-.. + +||-..+. | .+.+.
T Consensus 10 ~~~~~~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~~C~~F~s~~~~i~Lv~~-eEF~~~ap~~~~~~~~~~~~~ 88 (355)
T PF09766_consen 10 AQFRIKKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIKKCLDFKSKYEDIELVPV-EEFYAKAPEEISDPELTEDDE 88 (355)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCCCcCccH-HHHHHhChhhccccccCCCCh
Confidence 5566667776666667777777888877776666666666633221111 2 34443332 1 23445
Q ss_pred HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043674 215 RTLIAAT------AVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVN 268 (891)
Q Consensus 215 RaLmae~------a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l 268 (891)
..||-+. +-+.+.+.+..|+.+......+-..-.++...+...|++|+....-+
T Consensus 89 H~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~pl 148 (355)
T PF09766_consen 89 HQLMLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPL 148 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6666653 56677777788888888888888888888888888888887665544
No 236
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=34.08 E-value=1.2e+02 Score=29.76 Aligned_cols=49 Identities=22% Similarity=0.342 Sum_probs=39.1
Q ss_pred chhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 043674 324 AVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEG 372 (891)
Q Consensus 324 sV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe 372 (891)
.|..|-+.+.++...|..|...|..--++-.+|+.|++-|..+|..++.
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566777788888888888888888888888888888888888887643
No 237
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.93 E-value=7.3e+02 Score=27.96 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 043674 331 KIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKES 376 (891)
Q Consensus 331 kiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~ 376 (891)
-..++-..+-+|+.....+...|--|..+....+.....|++.++.
T Consensus 177 l~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~~qka~ 222 (265)
T COG3883 177 LQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALEEQKAL 222 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3677778888888888888888888888888888888888877653
No 238
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=33.92 E-value=1e+03 Score=29.54 Aligned_cols=197 Identities=16% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHhhchhhhhccCccccc
Q 043674 150 ALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEI------------------EDQITEMQAKVCNLQDEFGIGTVIDD 211 (891)
Q Consensus 150 Ae~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~L------------------E~qIs~~Qe~v~~LqDEf~~~a~IED 211 (891)
++.-|+.....|..|-+=-+-----|++|+++|.+| |+++...+..+..+...-+.|-.|+
T Consensus 116 iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk~Le~i~~~l~qf~~lt~~Gd~ie- 194 (570)
T COG4477 116 IEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEKKLENIEEELSQFVELTSSGDYIE- 194 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhccCCChhH-
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhh--hhh
Q 043674 212 NEARTLIAAT-----AVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEE--NEN 284 (891)
Q Consensus 212 ~EARaLmae~-----a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~q--q~l 284 (891)
|+..-.++ ++.+.-+.|-.|=.+.. +..=..+..||..+.++.. +...+. +-=
T Consensus 195 --A~evl~~~ee~~~~L~~~~e~IP~L~~e~~-------------~~lP~ql~~Lk~Gyr~m~~-----~gY~l~~~~id 254 (570)
T COG4477 195 --AREVLEEAEEHMIALRSIMERIPSLLAELQ-------------TELPGQLQDLKAGYRDMKE-----EGYHLEHVNID 254 (570)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hhchHHHHHHHHHHHHHHH-----ccCCcccccHH
Q ss_pred hccccccccccccc---------CchhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHH
Q 043674 285 KTTAGSELKADLAP---------QGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKT 355 (891)
Q Consensus 285 e~is~lE~~i~~ae---------~~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~R 355 (891)
..+..|...+.... .++-++..+.++|..+++ .....++-..........|=..+.++.+.-..
T Consensus 255 ~~~~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd-------~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~ 327 (570)
T COG4477 255 SRLERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYD-------LLEREVEAKNVVEENLPILPDYLEKAKENNEH 327 (570)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q 043674 356 LRSETDQLEGHISRLEGEK 374 (891)
Q Consensus 356 Lr~E~deL~~kL~tLEe~k 374 (891)
|..||+.+...-.-.|.+.
T Consensus 328 L~~Eie~V~~sY~l~e~e~ 346 (570)
T COG4477 328 LKEEIERVKESYRLAETEL 346 (570)
T ss_pred HHHHHHHHHHHhccChhHH
No 239
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=33.85 E-value=7e+02 Score=27.76 Aligned_cols=61 Identities=13% Similarity=0.097 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcc
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTV 208 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~ 208 (891)
..|+.++...+..+..++..-+......+..-+.+...+.++..++.+..+.+.=+..+++
T Consensus 89 ~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~v 149 (346)
T PRK10476 89 AQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEPLLAKGYV 149 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 3444555555555444443333333334444455556666666666666665544444554
No 240
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=33.81 E-value=7.1e+02 Score=27.80 Aligned_cols=21 Identities=5% Similarity=0.173 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 043674 352 LVKTLRSETDQLEGHISRLEG 372 (891)
Q Consensus 352 ~i~RLr~E~deL~~kL~tLEe 372 (891)
.+..++.++..+..++..++.
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544
No 241
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=33.79 E-value=86 Score=36.03 Aligned_cols=48 Identities=27% Similarity=0.469 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 043674 326 TQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGE 373 (891)
Q Consensus 326 ~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~ 373 (891)
..|..+|+++-+.|..||..+...+..+..+...+..+..+|..||+.
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnr 187 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENR 187 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 356778999999999999888888888888888888888888888764
No 242
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=33.32 E-value=1.2e+03 Score=30.27 Aligned_cols=206 Identities=16% Similarity=0.206 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHH--HH
Q 043674 148 EEALEEIDKLQKGILGLQTEKE---FAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAA--TA 222 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKE---a~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae--~a 222 (891)
.-++.||+.|+..|+.-|.--+ .--+||||+++-+- --+..|+|- +.+.. -|.++.+. +.
T Consensus 386 e~~E~EvD~lksQLADYQQALD~QQTRAlQYQQAi~ALe--------kAk~Lc~l~-dLt~~------~~e~~~~~f~A~ 450 (1480)
T COG3096 386 EAAELEVDELKSQLADYQQALDVQQTRAIQYQQAIAALE--------RAKELCHLP-DLTAD------SAEEWLETFQAK 450 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------HHHHhcCcc-ccchh------hHHHHHHHHHHh
Confidence 4578899999999988774433 34589999987652 234567774 22211 12333322 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhh----hccchhhhhhhccccccccccccc
Q 043674 223 VKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDERE----QEQPWEENENKTTAGSELKADLAP 298 (891)
Q Consensus 223 ~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~e----ke~~~~qq~le~is~lE~~i~~ae 298 (891)
-.+.-+++-.|+.+.+-+.--+. ++..|=.-+..+-.++.+..+-+-- -+.|..+...+..+-+-.+++.++
T Consensus 451 ~e~~Te~lL~Le~kms~s~AA~s----QF~~AyqLV~~iaGE~~RS~A~~~A~~llR~~p~q~~~aq~~~~lr~~l~eLE 526 (1480)
T COG3096 451 EEEATEKLLSLEQKMSMAQAAHS----QFEQAYQLVVAIAGELARSEAWDVARELLREGPDQRHLAEQVQPLRMRLSELE 526 (1480)
T ss_pred HHHHHHHHHHHHHhccHHHHHHH----HHHHHHHHHHHHhCccchhhHHHHHHHHHHhChhhHHHHHhhhHHHHHHHHHH
Confidence 34455666666666554432222 2222222222222222222110000 011111101111111111111111
Q ss_pred CchhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 043674 299 QGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGE 373 (891)
Q Consensus 299 ~~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~ 373 (891)
+-- .-+.-..++-.-|-..-+.+|...++-.--.++---|-+|...+|.+-++--.||.+-..|+.+++.+...
T Consensus 527 qr~-~qQqsa~~Ll~~f~kr~~~~l~ae~lE~~~~e~eal~E~ls~~~s~~~EqR~~lRq~~e~L~~~~~~~~~~ 600 (1480)
T COG3096 527 QRL-RQQQSAERLLADFCKRQGKNLDAEELEALHQELEALIESLSDSVSNAREQRMALRQEQEQLQSRIQSLMQR 600 (1480)
T ss_pred HHH-HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 100 00111122222233333445553333322334444556788889999999999999999999888877654
No 243
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=33.21 E-value=55 Score=34.09 Aligned_cols=43 Identities=26% Similarity=0.354 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHhhchhhhhccCcccccHHHHHHHHHHHHH
Q 043674 171 AKSSYERGYEKYWEIEDQITE---MQAKVCNLQDEFGIGTVIDDNEARTLIAATAVK 224 (891)
Q Consensus 171 ~~lqYqqsleK~~~LE~qIs~---~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~k 224 (891)
.-.-|.++|||-.=||.+|-+ ++.++.+|.|| +|-|+++++++
T Consensus 5 ~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE-----------~RDLKqEl~V~ 50 (166)
T PF04880_consen 5 FESKLNQAIERNALLESELDEKENLREEVQRLKDE-----------LRDLKQELIVQ 50 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCH----------------------------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Confidence 346799999999999999954 45566667654 88888887554
No 244
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=32.80 E-value=7.7e+02 Score=27.90 Aligned_cols=49 Identities=22% Similarity=0.183 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 043674 150 ALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNL 199 (891)
Q Consensus 150 Ae~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~L 199 (891)
|..|.+..+.-+..++.+ ......+......+..|+.+...+.+++..|
T Consensus 21 ~~~E~~~Y~~fL~~l~~~-~~~~~~~~~~~~el~~le~Ee~~l~~eL~~L 69 (314)
T PF04111_consen 21 AEKERDTYQEFLKKLEEE-SDSEEDIEELEEELEKLEQEEEELLQELEEL 69 (314)
T ss_dssp ----------------------HH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444410 1112222333334444444444444444444
No 245
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=32.68 E-value=6.9e+02 Score=30.72 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhh
Q 043674 179 YEKYWEIEDQITEMQAKVCNLQDE 202 (891)
Q Consensus 179 leK~~~LE~qIs~~Qe~v~~LqDE 202 (891)
-+|+-.+|+++..+--+++-|.-|
T Consensus 165 ~ekLk~~~een~~lr~k~~llk~E 188 (596)
T KOG4360|consen 165 QEKLKPLEEENTQLRSKAMLLKTE 188 (596)
T ss_pred HhhcCChHHHHHHHHHHHHHHHhh
Confidence 356666666666666666666544
No 246
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=32.43 E-value=1.6e+02 Score=32.98 Aligned_cols=86 Identities=27% Similarity=0.457 Sum_probs=57.9
Q ss_pred hhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhchhhhhccCc-----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 166 TEKEFAKSSY--ERGYEKYWEIEDQITEMQAKVCNLQDEFGIGT-----VIDDNEARTLIAATAVKSCQDTLSKLQEKQE 238 (891)
Q Consensus 166 tEKEa~~lqY--qqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a-----~IED~EARaLmae~a~ksc~EtL~kLeekq~ 238 (891)
.|-|-+...| .+-|.|.-++|.+++++--..-.|--.|-.|- .|| +|+ .+.+.+..|.|.|.+|++.|.
T Consensus 201 sEeeNar~V~kAnsVldRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ie-ke~---q~raeL~acEEkl~kmeE~Qa 276 (311)
T PF04642_consen 201 SEEENARAVEKANSVLDRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIE-KEN---QARAELNACEEKLKKMEEEQA 276 (311)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHh-hHH---HHHHHHHHHHHHHhcccHHHH
Confidence 4555555555 46789999999999876433333322221111 232 233 245689999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043674 239 QSLEEAKTEQQRIIEAH 255 (891)
Q Consensus 239 ~s~eeAk~e~eRv~~Ae 255 (891)
....-|+.+..|.-+|.
T Consensus 277 ~~l~~aR~~errkvraq 293 (311)
T PF04642_consen 277 EMLRAARTEERRKVRAQ 293 (311)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998887765554
No 247
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=32.16 E-value=1.2e+02 Score=27.37 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 043674 332 IDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHI 367 (891)
Q Consensus 332 iDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL 367 (891)
|..|=.++-.+|..+......+..+-.+++.|...+
T Consensus 35 IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 35 IKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444444444433333
No 248
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=32.07 E-value=1.3e+03 Score=30.30 Aligned_cols=28 Identities=14% Similarity=0.059 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 043674 154 IDKLQKGILGLQTEKEFAKSSYERGYEK 181 (891)
Q Consensus 154 I~~LQk~il~LQtEKEa~~lqYqqsleK 181 (891)
+..++..+..++.........+...-.+
T Consensus 618 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 645 (1047)
T PRK10246 618 RHELQGQIAAHNQQIIQYQQQIEQRQQQ 645 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555544444444444444
No 249
>PRK00736 hypothetical protein; Provisional
Probab=31.65 E-value=1.7e+02 Score=26.20 Aligned_cols=42 Identities=29% Similarity=0.397 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHH-------hHHHhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 043674 330 EKIDELVDKVVN-------LESAVSSQTALVKTLRSETDQLEGHISRLE 371 (891)
Q Consensus 330 EkiDeLV~KVis-------LE~~vSsQta~i~RLr~E~deL~~kL~tLE 371 (891)
++|.+|-.||.= |-..|..|+.+|.+|.....-|..+|..++
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555444 445556666666666666666666666554
No 250
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=31.62 E-value=7.1e+02 Score=27.11 Aligned_cols=21 Identities=10% Similarity=0.249 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhhchh
Q 043674 180 EKYWEIEDQITEMQAKVCNLQ 200 (891)
Q Consensus 180 eK~~~LE~qIs~~Qe~v~~Lq 200 (891)
.|+..||.++-.+|++...++
T Consensus 11 rri~~leeele~aqErl~~a~ 31 (205)
T KOG1003|consen 11 RRIQLLEEELDRAQERLATAL 31 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 477788888888888777654
No 251
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=30.33 E-value=1.5e+02 Score=25.73 Aligned_cols=58 Identities=19% Similarity=0.294 Sum_probs=36.6
Q ss_pred HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCccccchhhHHH-HhccCCcch
Q 043674 334 ELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESLIADSDATSSADYLSE-KLQSGKIEE 401 (891)
Q Consensus 334 eLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L~~ds~~~~~l~~ls~-kL~~vk~~~ 401 (891)
.-+-.+..+...+...+.++..|+.+++.|...|+.|..+.. .+..++- +|+=++|++
T Consensus 14 ~~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~----------~ie~~AR~~lgm~~~~E 72 (80)
T PF04977_consen 14 SGYSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPD----------YIEKVAREKLGMVKPGE 72 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH----------HHHHHHHHHcCCcCCCC
Confidence 334455666677777777777777777777777776633322 3456666 666666665
No 252
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.08 E-value=1.7e+02 Score=27.07 Aligned_cols=67 Identities=19% Similarity=0.273 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCcc-ccchhhHHHHh
Q 043674 328 LVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESLIADSDA-TSSADYLSEKL 394 (891)
Q Consensus 328 ~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L~~ds~~-~~~l~~ls~kL 394 (891)
+-+||++.|+.|.-|-.+|-.-.+.-+.|..|..+++.....|+.+...|-..-.. +-.|..|.+|+
T Consensus 9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34456677776666655544444444444444444444444444444443211111 44444455444
No 253
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=30.04 E-value=1.1e+03 Score=28.95 Aligned_cols=85 Identities=9% Similarity=0.111 Sum_probs=47.5
Q ss_pred hccccccccccccc-CchhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHH
Q 043674 285 KTTAGSELKADLAP-QGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQL 363 (891)
Q Consensus 285 e~is~lE~~i~~ae-~~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL 363 (891)
..+.+|+..+.-+. +.....+.|..+|-+.- .+..+.+-..++++..+-..+.. .+++++..+|.|
T Consensus 358 ~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~----------~e~~~~~r~~lekl~~~q~e~~~---~l~~v~eKVd~L 424 (531)
T PF15450_consen 358 RQLKDLDDHILALSWRLDLQEQTLNLRLSEAK----------NEWESDERKSLEKLDQWQNEMEK---HLKEVQEKVDSL 424 (531)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhh
Confidence 34444444433332 44555566666665551 24455566777777776665543 355666666666
Q ss_pred HHHHhhhhhhhcccccCCc
Q 043674 364 EGHISRLEGEKESLIADSD 382 (891)
Q Consensus 364 ~~kL~tLEe~k~~L~~ds~ 382 (891)
-..|..+-+.|...-+|++
T Consensus 425 pqqI~~vs~Kc~~~Ksd~d 443 (531)
T PF15450_consen 425 PQQIEEVSDKCDLHKSDSD 443 (531)
T ss_pred hHHHHHHHHHHHHHHhhhh
Confidence 6666666666655544443
No 254
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=29.66 E-value=1.5e+03 Score=30.22 Aligned_cols=95 Identities=16% Similarity=0.239 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHH
Q 043674 149 EALEEIDKLQKGILGLQTEKEFAKS----------SYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLI 218 (891)
Q Consensus 149 eAe~EI~~LQk~il~LQtEKEa~~l----------qYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLm 218 (891)
+--.||.+|+..|.+.- ||.-+.. -|+.-.++|..+|.+|.-+.+.+..|++ ...-
T Consensus 408 d~~~EIerLK~dl~AaR-eKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e-------------~~~~ 473 (1041)
T KOG0243|consen 408 DLYEEIERLKRDLAAAR-EKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTE-------------LYMN 473 (1041)
T ss_pred HHHHHHHHHHHHHHHhH-hhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHhh
Confidence 34569999998887752 3332222 2333444455555555555555555532 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 219 AATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEK 257 (891)
Q Consensus 219 ae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~k 257 (891)
....+..+.+++-+|+.++.....+-....+-...++..
T Consensus 474 ~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 474 QLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555544444444444444433
No 255
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=28.52 E-value=1.9e+02 Score=24.94 Aligned_cols=35 Identities=31% Similarity=0.419 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 043674 332 IDELVDKVVNLESAVSSQTALVKTLRSETDQLEGH 366 (891)
Q Consensus 332 iDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~k 366 (891)
+.+|.++|..|+.+...-...+..|..++..|...
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55566666666555555555555555555554443
No 256
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=28.31 E-value=1.1e+03 Score=28.48 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=20.9
Q ss_pred cCCChHHHHHHHHHHHHHHHhhhhh-HHHHHHHHH
Q 043674 143 SGLNKEEALEEIDKLQKGILGLQTE-KEFAKSSYE 176 (891)
Q Consensus 143 sgLsk~eAe~EI~~LQk~il~LQtE-KEa~~lqYq 176 (891)
+-|+++....-|.+|.+.+..+++| .+.+...|.
T Consensus 5 ~~l~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~ 39 (593)
T PF06248_consen 5 GPLSKEDLRKSISRLSRRIEELKEEVHSMINKKYS 39 (593)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777777777777754 333443343
No 257
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=27.90 E-value=3.8e+02 Score=31.07 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=15.8
Q ss_pred HHHhhHHHHHHHhHHHHHH
Q 043674 658 KIRADIDELLEENLEFWLR 676 (891)
Q Consensus 658 KfR~dID~lLEENLeFWlR 676 (891)
.|+.-|-...|-.|..|+-
T Consensus 346 ~f~g~IS~~FepyL~iyv~ 364 (383)
T PF04100_consen 346 NFKGIISSCFEPYLSIYVD 364 (383)
T ss_pred ccccchHHhhHhhHHHHHH
Confidence 6888888888888888875
No 258
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=27.85 E-value=72 Score=27.93 Aligned_cols=39 Identities=13% Similarity=0.388 Sum_probs=34.4
Q ss_pred HHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 043674 338 KVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKES 376 (891)
Q Consensus 338 KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~ 376 (891)
+|-.||..+++-...|+.++.|+.++.+.|..+++.-..
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466899999999999999999999999999999876443
No 259
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=27.67 E-value=1.3e+02 Score=34.69 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 328 LVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 328 ~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
|.+-++-|++.+..|...+.+-+.+-+||+.+++.+.++|..+=..|..+
T Consensus 128 i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~ 177 (342)
T PF06632_consen 128 IRELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEH 177 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55779999999999999999999999999999999999999887777655
No 260
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=27.39 E-value=3.9e+02 Score=26.86 Aligned_cols=47 Identities=21% Similarity=0.214 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 043674 154 IDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQ 200 (891)
Q Consensus 154 I~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~Lq 200 (891)
+....+.|..||.|.+.....|++..+.|..||..+..+..+.....
T Consensus 36 L~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~ 82 (160)
T PF13094_consen 36 LAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEE 82 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999999999999999999998888777753
No 261
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=27.20 E-value=1e+03 Score=27.63 Aligned_cols=127 Identities=19% Similarity=0.245 Sum_probs=69.4
Q ss_pred hhhccCCChHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCc-ccccHHHHH
Q 043674 139 VSLKSGLNKEEALEEIDKLQKGILG-LQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGT-VIDDNEART 216 (891)
Q Consensus 139 ~~~~sgLsk~eAe~EI~~LQk~il~-LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a-~IED~EARa 216 (891)
..+.+..+..+=..|+.+.--.|-. +.+..--=..-++|.-.=...|+..+..+.....+|..+++... -|+ .|.
T Consensus 185 ~i~es~vd~~eWklEvERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~---sRE 261 (359)
T PF10498_consen 185 EIIESKVDPAEWKLEVERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIE---SRE 261 (359)
T ss_pred hcccccCCHHHHHHHHHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 3455556666666677766444421 11222222233333333333344444444444444444433111 111 111
Q ss_pred --H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043674 217 --L-----IAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVN 268 (891)
Q Consensus 217 --L-----mae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l 268 (891)
| -.-..|.+.+.+|+..+++...+.........-..+.-++++..|+++..-
T Consensus 262 k~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 262 KYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 111378888888888888888888888888877788888888888877633
No 262
>PHA02675 ORF104 fusion protein; Provisional
Probab=26.58 E-value=2.2e+02 Score=27.03 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 043674 224 KSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQT 270 (891)
Q Consensus 224 ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~ 270 (891)
.+..+.|..|.+.+..+.+.-+...+++.++|.-+++|+.....|..
T Consensus 33 esle~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~L~K 79 (90)
T PHA02675 33 ESVEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREALLKLNT 79 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999999999999999999999999999999987755
No 263
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=26.30 E-value=1.5e+02 Score=32.84 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 043674 330 EKIDELVDKVVNLESAVSSQTALVKTLRS 358 (891)
Q Consensus 330 EkiDeLV~KVisLE~~vSsQta~i~RLr~ 358 (891)
.+|.++.+.|..||..|..|++++++++.
T Consensus 187 ~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~ 215 (259)
T PF08657_consen 187 QRYNQLSNSIAYLEAEVAEQEAQLERMNR 215 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788888899999999999998888854
No 264
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=26.20 E-value=7.2e+02 Score=25.43 Aligned_cols=51 Identities=16% Similarity=0.239 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 043674 150 ALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQ 200 (891)
Q Consensus 150 Ae~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~Lq 200 (891)
-+.-|..|...|...|++++.+.+..+.+-+=+..|+.+|+.+=.+...|.
T Consensus 22 le~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~ 72 (140)
T PF10473_consen 22 LEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLE 72 (140)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577777777777888888888888777777777777776666666654
No 265
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=26.02 E-value=2e+02 Score=30.40 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 043674 149 EALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNL 199 (891)
Q Consensus 149 eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~L 199 (891)
+.+.+|..|...|+.||-......-..+..-..+..++..++.+++++...
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554444444444444333333333333333333333333
No 266
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=25.98 E-value=1.3e+02 Score=31.85 Aligned_cols=63 Identities=33% Similarity=0.383 Sum_probs=50.6
Q ss_pred HHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHH--HHHHHHHHHhhhhhhhccc
Q 043674 313 DQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRS--ETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 313 e~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~--E~deL~~kL~tLEe~k~~L 377 (891)
.+|+..++..|+|. -++|..|-+||-+|-...|+-.|+|+-|.+ -+.++|+.|+.|-++|+.-
T Consensus 71 DqF~~~~~eel~~l--d~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~ 135 (201)
T KOG4603|consen 71 DQFDMVSDEELQVL--DGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGY 135 (201)
T ss_pred HhhcCCChHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 45777766666554 568999999999999999999999999876 4789999999999887643
No 267
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=25.59 E-value=1.2e+02 Score=31.34 Aligned_cols=55 Identities=20% Similarity=0.307 Sum_probs=43.4
Q ss_pred CchhhHHHH--HHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHH
Q 043674 299 QGKSDVELS--SKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKT 355 (891)
Q Consensus 299 ~~e~Eve~L--~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~R 355 (891)
.++.||..| +..+...|... -..-+.+||+|+.+-..||+.||..|+....++..
T Consensus 81 ~a~~Em~KLi~yk~~aKsyAkk--KD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~~ 137 (152)
T PF11500_consen 81 KAEKEMEKLIKYKQLAKSYAKK--KDAEAMRLAEKLKEEQEKVAEMERHVTELASQMAS 137 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777 67777777754 33467899999999999999999999987776654
No 268
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=24.75 E-value=1.4e+03 Score=28.21 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 222 AVKSCQDTLSKLQEKQEQSLEEAKTE 247 (891)
Q Consensus 222 a~ksc~EtL~kLeekq~~s~eeAk~e 247 (891)
++++-+++|++|+.+.++..-+|...
T Consensus 310 qV~qs~EKIa~LEqEKEHw~LEaQL~ 335 (518)
T PF10212_consen 310 QVQQSQEKIAKLEQEKEHWMLEAQLA 335 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666655555544
No 269
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=24.61 E-value=8.1e+02 Score=25.50 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=37.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 043674 156 KLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQ 200 (891)
Q Consensus 156 ~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~Lq 200 (891)
.++++|..++.=|+-++--+++|-.-|..|.+++.+...++...-
T Consensus 3 Ii~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I 47 (159)
T PF05384_consen 3 IIKKTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVI 47 (159)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888988999999999988888888888888887777664
No 270
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.47 E-value=1.5e+03 Score=28.64 Aligned_cols=173 Identities=16% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 169 EFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQ 248 (891)
Q Consensus 169 Ea~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~eeAk~e~ 248 (891)
++....|=.-|..|| |++| |.+..|--|.+.--+.|.+-.. .+++.+.+.-..+.
T Consensus 13 ~~t~~~~~~eL~~IW-----------------~~ig-----E~~~e~d~~l~~le~e~~~~y~---~kve~a~~~~~~L~ 67 (660)
T KOG4302|consen 13 EATCGNLLNELQKIW-----------------DEIG-----ESETERDKKLLRLEQECLEIYK---RKVEEASESKARLL 67 (660)
T ss_pred HHHHHHHHHHHHHHH-----------------HHhC-----ccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhccccchhh---hccchhhhhhhccccccccccccc--------CchhhHHHHHHHHHHHHhh
Q 043674 249 QRIIEAHEKFIKLRNRFIVNQTDERE---QEQPWEENENKTTAGSELKADLAP--------QGKSDVELSSKKIEDQVAV 317 (891)
Q Consensus 249 eRv~~Ae~klkaLK~e~~~l~~~~~e---ke~~~~qq~le~is~lE~~i~~ae--------~~e~Eve~L~eKIke~~E~ 317 (891)
+-+..++.++.+|...++.... -+. +....+++|+..+...-..+.... ....+++.|+..|...+-.
T Consensus 68 ~~ia~~eael~~l~s~l~~~~~-~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~ 146 (660)
T KOG4302|consen 68 QEIAVIEAELNDLCSALGEPSI-IGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDL 146 (660)
T ss_pred HHHHHHHHHHHHHHHHhCCccc-ccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccC
Q ss_pred cCCCccchhhHH-HHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 043674 318 DSNESLAVTQLV-EKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHI 367 (891)
Q Consensus 318 ~s~ssLsV~e~A-EkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL 367 (891)
.....+.-.|+. ++.+++-+.+-.|+...+.==..|.-+..+|-.|-..|
T Consensus 147 ~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~L 197 (660)
T KOG4302|consen 147 PSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVL 197 (660)
T ss_pred CcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 271
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=24.26 E-value=5.1e+02 Score=26.46 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043674 228 DTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFI 266 (891)
Q Consensus 228 EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~ 266 (891)
--|-+|+...+....+++.+.+|.+.++.++..||+-+.
T Consensus 47 ~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~ 85 (162)
T PF05565_consen 47 KVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLL 85 (162)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555556666666666666666655444
No 272
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=24.15 E-value=67 Score=25.51 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=14.3
Q ss_pred HHhhHHHHHHHhHHHHHH
Q 043674 659 IRADIDELLEENLEFWLR 676 (891)
Q Consensus 659 fR~dID~lLEENLeFWlR 676 (891)
+--+||.+||+|-+=++|
T Consensus 8 lLDeId~vLe~NAe~FV~ 25 (33)
T TIGR03687 8 LLDEIDGVLESNAEEFVR 25 (33)
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 345899999999886665
No 273
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=23.84 E-value=2.2e+02 Score=27.53 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 043674 331 KIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEK 374 (891)
Q Consensus 331 kiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k 374 (891)
.-+.|...+..|+..+...+..+++|+..+..++++++.|-.++
T Consensus 74 ~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 74 CQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34667788889999999999999999999999999998886553
No 274
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=23.81 E-value=1.2e+03 Score=28.28 Aligned_cols=25 Identities=40% Similarity=0.391 Sum_probs=19.8
Q ss_pred HH-HHHHHHHhhhhhHHHHHHHHHHH
Q 043674 154 ID-KLQKGILGLQTEKEFAKSSYERG 178 (891)
Q Consensus 154 I~-~LQk~il~LQtEKEa~~lqYqqs 178 (891)
|. +|=|.|-+|+.|||..-.-|+.-
T Consensus 101 isntLlkkiqal~keketla~~Ye~e 126 (552)
T KOG2129|consen 101 ISNTLLKKIQALFKEKETLATVYEVE 126 (552)
T ss_pred HHHHHHHHHHHhhccccccchhhhhh
Confidence 55 67788888999999888888653
No 275
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=23.70 E-value=3.1e+02 Score=27.76 Aligned_cols=14 Identities=14% Similarity=0.527 Sum_probs=5.4
Q ss_pred HHHHHHHHHHhhch
Q 043674 186 EDQITEMQAKVCNL 199 (891)
Q Consensus 186 E~qIs~~Qe~v~~L 199 (891)
+.+++.+..+...|
T Consensus 92 ~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 92 KKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334333333333
No 276
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=23.58 E-value=1e+03 Score=28.68 Aligned_cols=43 Identities=35% Similarity=0.519 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 332 IDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 332 iDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
+.-|++||-.||..-...+.-++.||.|.-+|.+. ||.+-++|
T Consensus 160 vnKlm~ki~Klen~t~~kq~~leQLRre~V~lent---lEQEqEal 202 (552)
T KOG2129|consen 160 VNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENT---LEQEQEAL 202 (552)
T ss_pred HHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhH---HHHHHHHH
Confidence 55688999999999999999999999999888764 55555566
No 277
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=23.38 E-value=1.2e+03 Score=30.97 Aligned_cols=55 Identities=18% Similarity=0.240 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 043674 216 TLIAATAVKSCQDTLSKLQEKQEQSL----------------EEAKTEQQRIIEAHEKFIKLRNRFIVNQT 270 (891)
Q Consensus 216 aLmae~a~ksc~EtL~kLeekq~~s~----------------eeAk~e~eRv~~Ae~klkaLK~e~~~l~~ 270 (891)
-||-.+-++..-+.|.+|...+..+. .+-+.-.+++++.+.++.+++..|..+.+
T Consensus 399 kl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e 469 (1041)
T KOG0243|consen 399 KLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTE 469 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777788888876643322 13344556677777777777776665544
No 278
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=23.30 E-value=5.7e+02 Score=23.23 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043674 172 KSSYERGYEKYWEIEDQITEMQA 194 (891)
Q Consensus 172 ~lqYqqsleK~~~LE~qIs~~Qe 194 (891)
..+|...-.++..|+.++...+.
T Consensus 11 ~~~l~~~~~q~~~l~~~~~~~~~ 33 (106)
T PF01920_consen 11 NQQLQQLEQQIQQLERQLRELEL 33 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555544433
No 279
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=23.25 E-value=95 Score=31.26 Aligned_cols=33 Identities=27% Similarity=0.470 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHhhhhccchHHHHHHHHhh
Q 043674 527 NRDRFIELALQIRELENAVAFRDEEIHALRQKL 559 (891)
Q Consensus 527 Nqd~~~E~~lqirELk~Ana~KDeEI~sLr~~l 559 (891)
||.-+----..+++|+..+..||.||..||++|
T Consensus 85 ~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L 117 (131)
T PF04859_consen 85 QQSLIKTYEIVVKKLEAELRAKDSEIDRLREKL 117 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 280
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=23.21 E-value=3.7e+02 Score=30.59 Aligned_cols=134 Identities=11% Similarity=0.158 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhcccccccccccccCchhhHHHHHHHH
Q 043674 232 KLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLAPQGKSDVELSSKKI 311 (891)
Q Consensus 232 kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~ae~~e~Eve~L~eKI 311 (891)
-+=.+.+++-++|..+-..+.+...+++.|-..-..... .... +.|.... ..+...+.+|..|+..|
T Consensus 38 ~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~-------~k~~---~si~~q~---~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 38 YFYQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANI-------AKAE---ESIAAQK---RAIEDLQKKIDSLKDQI 104 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHH-------HHHH---HHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 344677788888888888888888888776443332222 0000 1111111 11223456667777777
Q ss_pred HHHHhhcCCCccch-hhH---HHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Q 043674 312 EDQVAVDSNESLAV-TQL---VEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESLI 378 (891)
Q Consensus 312 ke~~E~~s~ssLsV-~e~---AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L~ 378 (891)
+.+...-.+...+. ..+ ...+.+..++...+-..+.-.+..+++........+..|..+++....|+
T Consensus 105 ~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~~~i 175 (301)
T PF06120_consen 105 KNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLTEQRIDLI 175 (301)
T ss_pred HHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54432111111111 122 23466778888888888888888888888888888888888888776554
No 281
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=22.94 E-value=2.1e+02 Score=32.54 Aligned_cols=64 Identities=11% Similarity=0.206 Sum_probs=36.0
Q ss_pred CchhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 043674 299 QGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLE 364 (891)
Q Consensus 299 ~~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~ 364 (891)
+++++--.....|-+..+.- .++|+.+++..|..+.+.|..+...|..+...|+.|+..+....
T Consensus 45 QAr~~A~~fA~~ld~~~~kl--~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~ 108 (301)
T PF06120_consen 45 QARQEAIEFADSLDELKEKL--KEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQ 108 (301)
T ss_pred HHHHHHHHHHHhhHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444434444444444433 45577777777777777777666666555555555555554443
No 282
>PF05073 Baculo_p24: Baculovirus P24 capsid protein; InterPro: IPR007765 The Culex nigripalpus NPV (Culex nigripalpus nucleopolyhedrovirus) protein p24 is associated with nucleocapsids of budded and polyhedra-derived virions [, ].; GO: 0019028 viral capsid
Probab=22.85 E-value=1.8e+02 Score=30.87 Aligned_cols=94 Identities=20% Similarity=0.368 Sum_probs=65.8
Q ss_pred chHHHHHHhhhhhhhHhhhhcccchHHHhhhhhhccchHHHHHHHHccccccccccccccccchhhhhhhhhhhhh-hhh
Q 043674 721 RPIYKHLREIQTELTLWLENNEVLKDEVQDRYTSLCNIQEEVSRVANASASASAKAEDAELSNYQAAKFQGEIMNM-KQE 799 (891)
Q Consensus 721 ~pi~khLREi~tEL~vWlE~nalLk~ELq~RfsSLC~IQEEIs~al~~~~~~~~~~~~~~ft~YQAAKFQGEVLNM-KQE 799 (891)
.|-|.-||-|=-+|-+=--.. ..|+|..=-.-||.|||=+......... +... -+ ..+..++..+ ..|
T Consensus 85 p~~Y~~LKqLi~DLl~G~Q~~--~~dpL~eIK~qLc~iqe~l~~~~~~~~~----~~~~-~~----~~~~~~l~~~l~se 153 (182)
T PF05073_consen 85 PPEYYTLKQLIRDLLVGAQSE--IVDPLCEIKTQLCTIQECLNENNSTLNS----HANA-NS----NSWIRELRDILRSE 153 (182)
T ss_pred chHHHHHHHHHHHHhcCChHH--HHHHHHHHHHHHHHHHHHHhcccccccc----ccCc-cc----chhHHHHHHHHHhh
Confidence 367888888888876543333 6677888888999999988765443221 0110 11 3666666655 468
Q ss_pred hhhhHHHHHhhhhHHHHHHHHHHHHH
Q 043674 800 NKKIADELHAGLDCVKQLRVEVEKTL 825 (891)
Q Consensus 800 NnKVa~ELQaGLd~V~~Lq~eVek~L 825 (891)
++++...+-+.||+||.+|.++-..|
T Consensus 154 ~~~~~~~~~~~Le~lKsiq~DltnKi 179 (182)
T PF05073_consen 154 NASLLSNINTILENLKSIQADLTNKI 179 (182)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHhhcc
Confidence 89999999999999999999986544
No 283
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=22.80 E-value=9.9e+02 Score=25.87 Aligned_cols=13 Identities=15% Similarity=0.463 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHh
Q 043674 330 EKIDELVDKVVNL 342 (891)
Q Consensus 330 EkiDeLV~KVisL 342 (891)
.....|++.|-..
T Consensus 156 ~~A~~LL~~v~~~ 168 (264)
T PF06008_consen 156 KEAEDLLSRVQKW 168 (264)
T ss_pred HHHHHHHHHHHHH
Confidence 3456666666654
No 284
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=22.77 E-value=1e+03 Score=28.83 Aligned_cols=95 Identities=19% Similarity=0.227 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHH
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQ 227 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~ 227 (891)
..+..|++.|+-+..-++++|..+---.+|--.|+..+.+++++.++....|. ... ..-
T Consensus 357 e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~------------------knq--~vw- 415 (493)
T KOG0804|consen 357 ELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLI------------------KNQ--DVW- 415 (493)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hhH--HHH-
Confidence 33445666666666666666666655555555555555555554443333332 111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043674 228 DTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRF 265 (891)
Q Consensus 228 EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~ 265 (891)
+.+|++..++-.+..+.-.+.|.++++.+..|+=-+
T Consensus 416 --~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~l 451 (493)
T KOG0804|consen 416 --RGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFL 451 (493)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheeh
Confidence 223333333333444555666777777777776443
No 285
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=22.69 E-value=1.1e+03 Score=30.58 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=23.4
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 043674 342 LESAVSSQTALVKTLRSETDQLEGHISRLE 371 (891)
Q Consensus 342 LE~~vSsQta~i~RLr~E~deL~~kL~tLE 371 (891)
|-..+-+--|+|.||+.-|-.||.....|=
T Consensus 527 L~itlrQrDaEi~RL~eLtR~LQ~Sma~lL 556 (861)
T PF15254_consen 527 LGITLRQRDAEIERLRELTRTLQNSMAKLL 556 (861)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444566778999999999999998766554
No 286
>smart00338 BRLZ basic region leucin zipper.
Probab=22.35 E-value=2.3e+02 Score=24.38 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHH
Q 043674 332 IDELVDKVVNLESAVSSQTALVKTLRSETDQLEG 365 (891)
Q Consensus 332 iDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~ 365 (891)
+++|..+|..|+.....-.+.|..|..++..|..
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555444444444444444443
No 287
>PRK00846 hypothetical protein; Provisional
Probab=22.25 E-value=2.7e+02 Score=25.86 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHhHH-------HhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 043674 326 TQLVEKIDELVDKVVNLES-------AVSSQTALVKTLRSETDQLEGHISRLE 371 (891)
Q Consensus 326 ~e~AEkiDeLV~KVisLE~-------~vSsQta~i~RLr~E~deL~~kL~tLE 371 (891)
.+|..+|++|-.+|.=.|. .|..|+..|.+|+..+.-|..+|++++
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456667777666655544 455566666666666666666666665
No 288
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=22.02 E-value=1.6e+02 Score=29.84 Aligned_cols=52 Identities=35% Similarity=0.463 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHH--HHHHHHHhhhhhhhccc
Q 043674 326 TQLVEKIDELVDKVVNLESAVSSQTALVKTLRSET--DQLEGHISRLEGEKESL 377 (891)
Q Consensus 326 ~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~--deL~~kL~tLEe~k~~L 377 (891)
.+|-..|.+|-+.+..|...+++..+++..|++.. ++|...|..|+.++..|
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l 128 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEEL 128 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555554432 44444444444444333
No 289
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=21.98 E-value=1.2e+03 Score=26.46 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=32.6
Q ss_pred chhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 043674 300 GKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEG 372 (891)
Q Consensus 300 ~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe 372 (891)
...+-..|++|++.+.+-..-... +++.++ + ..|+.+--..|-+.+.+..+.....+...+.+
T Consensus 133 ~~~eN~~L~eKlK~l~eQye~rE~-------~~~~~~-k--~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~ 195 (309)
T PF09728_consen 133 LREENEELREKLKSLIEQYELREE-------HFEKLL-K--QKELEVQLAEAKLEQQQEEAEQEKEKAKQEKE 195 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHh-h--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 445566788888887775421111 122222 2 34444444555555555555555555555544
No 290
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=21.96 E-value=1e+03 Score=25.75 Aligned_cols=75 Identities=9% Similarity=0.158 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHHHHhhcCCCccc-hhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 043674 301 KSDVELSSKKIEDQVAVDSNESLA-VTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKE 375 (891)
Q Consensus 301 e~Eve~L~eKIke~~E~~s~ssLs-V~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~ 375 (891)
-.+-+.|-..|...|..-....=. +..+-+.+.+.-.|+.+|...+-.+++.++.-..-+..-+..+..+++.+.
T Consensus 155 l~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~ 230 (264)
T PF06008_consen 155 LKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQ 230 (264)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666677766421111112 244566677777788888887777665554433333333334444444433
No 291
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=21.76 E-value=1.1e+03 Score=26.02 Aligned_cols=84 Identities=13% Similarity=0.007 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHH
Q 043674 149 EALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQD 228 (891)
Q Consensus 149 eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~E 228 (891)
.|+..+..++..+..+++... ..++.+.-..+...+.++..++.+..+.+.=|..|++-. ...-.+...|..++.
T Consensus 85 ~~~a~l~~~~~~l~~~~~~~~--~~~i~~~~~~l~~ak~~l~~a~~~~~r~~~L~~~g~vs~---~~~~~~~~~~~~a~~ 159 (331)
T PRK03598 85 QAKANVSVAQAQLDLMLAGYR--DEEIAQARAAVKQAQAAYDYAQNFYNRQQGLWKSRTISA---NDLENARSSRDQAQA 159 (331)
T ss_pred HHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHH
Confidence 455555555555555443211 112333334455666677777777766665566666532 222233334444444
Q ss_pred HHHHHHHHH
Q 043674 229 TLSKLQEKQ 237 (891)
Q Consensus 229 tL~kLeekq 237 (891)
.+..++..+
T Consensus 160 ~~~~a~~~~ 168 (331)
T PRK03598 160 TLKSAQDKL 168 (331)
T ss_pred HHHHHHHHH
Confidence 444444333
No 292
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=21.75 E-value=5.5e+02 Score=27.50 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 180 EKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFI 259 (891)
Q Consensus 180 eK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klk 259 (891)
+-+.-|.-.|..+++.+..|+++++ .. +.|.+.|-..+.+- .+|+++...-++.++- +++++
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s-~v---eaEik~L~s~Lt~e-------emQe~i~~L~kev~~~-------~erl~ 140 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCS-YV---EAEIKELSSALTTE-------EMQEEIQELKKEVAGY-------RERLK 140 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHhcChH-------HHHHHHHHHHHHHHHH-------HHHHH
Confidence 4445555566666666777766633 11 12334444444444 4444444444444444 44556
Q ss_pred HHHHhhhcccc
Q 043674 260 KLRNRFIVNQT 270 (891)
Q Consensus 260 aLK~e~~~l~~ 270 (891)
+||.......+
T Consensus 141 ~~k~g~~~vtp 151 (201)
T KOG4603|consen 141 NIKAGTNHVTP 151 (201)
T ss_pred HHHHhcccCCH
Confidence 67766655544
No 293
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=21.70 E-value=8.3e+02 Score=24.54 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043674 228 DTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFI 266 (891)
Q Consensus 228 EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~ 266 (891)
+.+..|+++.+...-..+++...-...+++++.|+..+-
T Consensus 70 ~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 70 EAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555544
No 294
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=21.53 E-value=6.9e+02 Score=28.77 Aligned_cols=75 Identities=7% Similarity=0.082 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 177 RGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHE 256 (891)
Q Consensus 177 qsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~ 256 (891)
+.++|+.+||+.|..+-.-++. ..... ..+ -..+.......+|..|+.++..... .++...+.
T Consensus 206 ~~la~~a~LE~RL~~LE~~lG~-~~~~~--~~l--------~~~~~~~~l~~~l~~L~~~lslL~~------~~Ld~i~~ 268 (388)
T PF04912_consen 206 QQLARAADLEKRLARLESALGI-DSDKM--SSL--------DSDTSSSPLLPALNELERQLSLLDP------AKLDSIER 268 (388)
T ss_pred hHHHHHHHHHHHHHHHHHHhCC-Ccccc--ccc--------cccCCcchHHHHHHHHHHHHHhcCH------HHHHHHHH
Confidence 3578999999999988777776 22210 011 0111245566667777777776632 23445555
Q ss_pred HHHHHHHhhhcc
Q 043674 257 KFIKLRNRFIVN 268 (891)
Q Consensus 257 klkaLK~e~~~l 268 (891)
++++|-.++..+
T Consensus 269 rl~~L~~~~~~l 280 (388)
T PF04912_consen 269 RLKSLLSELEEL 280 (388)
T ss_pred HHHHHHHHHHHH
Confidence 555555544433
No 295
>PF13166 AAA_13: AAA domain
Probab=21.44 E-value=1.5e+03 Score=27.59 Aligned_cols=177 Identities=14% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 176 ERGYEKYWE-IEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEA 254 (891)
Q Consensus 176 qqsleK~~~-LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~A 254 (891)
+...++|.. +.......+.++..+. .........+......+............+.......+...
T Consensus 268 ~~~~~~l~~~f~~~~~~~~~~l~~~~-------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 334 (712)
T PF13166_consen 268 EERKERLEKYFDEEYEKLIEELEKAI-------------KKLEKAIENIIEQLESILSENDFYEEFEEDKEELKSAIEAL 334 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhccccchhhhccc--------hhhhhhhcccccccccccccCchhhHHHHHHHHHHHHhhcCCCccchh
Q 043674 255 HEKFIKLRNRFIVNQTDEREQEQP--------WEENENKTTAGSELKADLAPQGKSDVELSSKKIEDQVAVDSNESLAVT 326 (891)
Q Consensus 255 e~klkaLK~e~~~l~~~~~eke~~--------~~qq~le~is~lE~~i~~ae~~e~Eve~L~eKIke~~E~~s~ssLsV~ 326 (891)
...+..++..+..... .--.+ ........+..+...+......-..+.....+++..+... -+.
T Consensus 335 ~~~l~~l~~~L~~K~~---~~~~~~~~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~-----~~~ 406 (712)
T PF13166_consen 335 KEELEELKKALEKKIK---NPSSPIELEEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLH-----LIA 406 (712)
T ss_pred HHHHHHHHHHHHHHHh---cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Q ss_pred hHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 043674 327 QLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGE 373 (891)
Q Consensus 327 e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~ 373 (891)
.+...|+.+...+..++..+......+..+..++..+..+|..|+..
T Consensus 407 ~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~ 453 (712)
T PF13166_consen 407 KLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQ 453 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 296
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=21.19 E-value=63 Score=30.77 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=29.0
Q ss_pred HHH-HhhhhhHHHHHhhhhHHHHHHHHHHHHHhhhhcC
Q 043674 673 FWL-RFSTSVHQIQKYQSTVQDLKAELARLKDKKKQEG 709 (891)
Q Consensus 673 FWl-RFStS~hqIQkFqt~~~dLq~El~kl~~~~~~eg 709 (891)
||+ -|..-+.|+|+.|..++++|.||...+-....+|
T Consensus 2 ~~~~n~~~m~kqaq~mQ~k~~~~q~eL~~~~v~g~sgg 39 (102)
T TIGR00103 2 FGKGNLGELMKQAQQMQEKMKKLQEEIAQFEVTGKSGA 39 (102)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECC
Confidence 454 4777789999999999999999998775555433
No 297
>PHA03011 hypothetical protein; Provisional
Probab=20.76 E-value=2.6e+02 Score=27.44 Aligned_cols=43 Identities=21% Similarity=0.434 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q 043674 327 QLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISR 369 (891)
Q Consensus 327 e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~t 369 (891)
++-+.|.-++|-+-.||.-+-.+-..|.-|+.++|.|.+.+-.
T Consensus 75 ~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN 117 (120)
T PHA03011 75 ELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIAN 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhc
Confidence 3445688899999999999999999999999999999998754
No 298
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=20.66 E-value=1.1e+03 Score=25.54 Aligned_cols=167 Identities=16% Similarity=0.221 Sum_probs=0.0
Q ss_pred hhhhhHHHhhcccc--ccccCC---------cccccccCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHH
Q 043674 51 YDHLSKELQSANRT--IATVFP---------EQVQFAMDAEDEENQGVSSPSNKAAFKPNANIPNVPAIPKKDFMTPFLR 119 (891)
Q Consensus 51 yd~~~~el~~~~~~--~~~~~p---------~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~p~~~~~~~~~~ 119 (891)
|=|+ |+..|.+ ||..+| +++.|.++..-...-.|...+.++ .-.-.+.-.+.
T Consensus 8 FLHi---LnqR~~G~rIPr~vPasLrasf~k~~i~Ydl~~~~~s~~~~~~~~~t~--------------t~~k~~f~~~y 70 (195)
T PF12761_consen 8 FLHI---LNQRNDGYRIPREVPASLRASFEKEQIDYDLNSSPQSRWKPSSSTSTS--------------TGRKAKFGDSY 70 (195)
T ss_pred HHHH---HhccccCCcCCccCCHHHHHHHhcCCcCccccchhhcccccCCCCCCc--------------chhhhhhhHHH
Q ss_pred HhhhccCCCCCchHHHHhhhhhccCCChHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHH---------HHHHHHHHHHHH
Q 043674 120 MAKKGLKGNSSSAKAAAAAVSLKSGLNKEE-ALEEIDKLQKGILGLQTEKEFAKSSYER---------GYEKYWEIEDQI 189 (891)
Q Consensus 120 ~~~~~~~k~~~s~~~~~~~~~~~sgLsk~e-Ae~EI~~LQk~il~LQtEKEa~~lqYqq---------sleK~~~LE~qI 189 (891)
+.+.|.+-. ........+|... ..-|+.+|+++|..|.+.=+.+.-.-.. .|-|. ++|.-+
T Consensus 71 l~rlG~~~~--------s~~~~gTdfS~~~~~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~-e~EqLL 141 (195)
T PF12761_consen 71 LSRLGRGGK--------SYKEKGTDFSATEGTDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKR-EFEQLL 141 (195)
T ss_pred HHHhccccC--------CCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHH-HHHHHH
Q ss_pred HHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 190 TEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRN 263 (891)
Q Consensus 190 s~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~ 263 (891)
.+.+.+...|.. +.+..=.+ |..+.+.++...+.+.++..-...=+.+|..|++
T Consensus 142 ~YK~~ql~~~~~--~~~~~~~~------------------l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 142 DYKERQLRELEE--GRSKSGKN------------------LKSVREDLDTIEEQVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHhhhc--cCCCCCCC------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 299
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=20.45 E-value=9.1e+02 Score=30.29 Aligned_cols=89 Identities=20% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHH
Q 043674 151 LEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTL 230 (891)
Q Consensus 151 e~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL 230 (891)
..+|..|-+.+-.|++|-.....--..-=.-+..|++++..+..++. ++......|+
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~---~~~~~~rei~-------------------- 477 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR---DKVRKDREIR-------------------- 477 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHH--------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 231 SKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRN 263 (891)
Q Consensus 231 ~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~ 263 (891)
.++.++.....+......++..++.++..|++
T Consensus 478 -~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 478 -ARDRRIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 300
>PLN03188 kinesin-12 family protein; Provisional
Probab=20.44 E-value=8.7e+02 Score=32.89 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043674 186 EDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRF 265 (891)
Q Consensus 186 E~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~ 265 (891)
|++--.+.++..+||.-.. |=|.|..|+. |-|..| ..+++-+-...+|+..|+.+...+++++
T Consensus 1172 eker~~~~~enk~l~~qlr-------dtaeav~aag------ellvrl----~eaeea~~~a~~r~~~~eqe~~~~~k~~ 1234 (1320)
T PLN03188 1172 EKERRYLRDENKSLQAQLR-------DTAEAVQAAG------ELLVRL----KEAEEALTVAQKRAMDAEQEAAEAYKQI 1234 (1320)
T ss_pred HHHHHHHHHhhHHHHHHHh-------hHHHHHHHHH------HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666652221 1244444443 333333 3455555556666666666666666666
Q ss_pred hcccc
Q 043674 266 IVNQT 270 (891)
Q Consensus 266 ~~l~~ 270 (891)
.+|.-
T Consensus 1235 ~klkr 1239 (1320)
T PLN03188 1235 DKLKR 1239 (1320)
T ss_pred HHHHH
Confidence 55533
No 301
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=20.32 E-value=1.9e+03 Score=28.17 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 043674 332 IDELVDKVVNLESAVSSQTALVKTLRSETDQLEGH 366 (891)
Q Consensus 332 iDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~k 366 (891)
+.-+-+++.+|...|--..--|.-|+.++..|.++
T Consensus 589 ~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk 623 (786)
T PF05483_consen 589 MKILENKCNNLRKQVENKNKNIEELQQENKALKKK 623 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33444445555544444444444444444444433
No 302
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=20.30 E-value=9.8e+02 Score=24.84 Aligned_cols=39 Identities=26% Similarity=0.252 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIE 186 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE 186 (891)
.....|+..|+.....|.++++.-+-...++-.++-.+|
T Consensus 46 ~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~E 84 (158)
T PF09744_consen 46 QEHEVELELLREDNEQLETQYEREKELRKQAEEELLELE 84 (158)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346668888888888888877776666655555555333
No 303
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=20.15 E-value=7.6e+02 Score=23.53 Aligned_cols=93 Identities=15% Similarity=0.200 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhc----cCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 166 TEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFG----IGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSL 241 (891)
Q Consensus 166 tEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~----~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~ 241 (891)
.+.+.+...|......+..++..+..+..........+. .|..+ +...+...-+..+...|..++..+..+.
T Consensus 13 ~~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~~~----~~l~~~~~f~~~l~~~i~~q~~~l~~~~ 88 (141)
T TIGR02473 13 KEEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQALEKVGAGTSA----LELSNYQRFIRQLDQRIQQQQQELALLQ 88 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666555444332 23222 1222333445556666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043674 242 EEAKTEQQRIIEAHEKFIKLR 262 (891)
Q Consensus 242 eeAk~e~eRv~~Ae~klkaLK 262 (891)
.......+....|..+.+.|.
T Consensus 89 ~~~e~~r~~l~~a~~~~k~le 109 (141)
T TIGR02473 89 QEVEAKRERLLEARRELKALE 109 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666655554
Done!