Query 043674
Match_columns 891
No_of_seqs 135 out of 157
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 12:17:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043674.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043674hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.8 0.0015 5.1E-08 63.7 18.7 47 153-199 49-95 (284)
2 1c1g_A Tropomyosin; contractIl 97.3 0.012 4.2E-07 57.2 17.7 45 155-199 2-46 (284)
3 1i84_S Smooth muscle myosin he 96.9 0.002 6.9E-08 79.5 10.6 51 148-198 853-903 (1184)
4 3vkg_A Dynein heavy chain, cyt 95.6 0.82 2.8E-05 62.2 24.1 99 154-268 1901-2002(3245)
5 2v71_A Nuclear distribution pr 94.8 0.51 1.8E-05 48.0 14.4 160 171-371 15-181 (189)
6 3na7_A HP0958; flagellar bioge 94.0 2 6.8E-05 44.5 17.4 73 174-259 12-84 (256)
7 3vkg_A Dynein heavy chain, cyt 94.0 0.83 2.8E-05 62.2 17.8 61 139-199 1920-1981(3245)
8 3u1c_A Tropomyosin alpha-1 cha 93.6 1.8 6.2E-05 39.6 14.3 92 154-265 4-95 (101)
9 3na7_A HP0958; flagellar bioge 92.6 5.9 0.0002 41.0 18.1 45 222-266 91-135 (256)
10 3u59_A Tropomyosin beta chain; 91.9 4.4 0.00015 36.8 14.3 46 154-199 4-49 (101)
11 3o0z_A RHO-associated protein 90.8 5.8 0.0002 39.7 15.0 49 329-377 89-137 (168)
12 3oja_B Anopheles plasmodium-re 89.6 1.6 5.6E-05 49.0 11.4 50 325-374 532-581 (597)
13 2fxo_A Myosin heavy chain, car 87.5 14 0.00048 34.8 14.4 115 148-268 9-123 (129)
14 2efr_A General control protein 87.2 8.2 0.00028 38.1 13.0 10 183-192 3-12 (155)
15 2dfs_A Myosin-5A; myosin-V, in 87.1 0.81 2.8E-05 56.6 7.3 33 341-373 1020-1052(1080)
16 3o0z_A RHO-associated protein 86.6 13 0.00044 37.3 14.2 76 150-238 60-135 (168)
17 1ic2_A Tropomyosin alpha chain 80.4 7.5 0.00025 34.0 8.6 35 155-189 2-36 (81)
18 2dfs_A Myosin-5A; myosin-V, in 76.1 34 0.0011 42.6 15.6 50 149-202 957-1006(1080)
19 3u59_A Tropomyosin beta chain; 75.6 36 0.0012 30.8 11.9 12 250-261 80-91 (101)
20 3u1c_A Tropomyosin alpha-1 cha 73.4 52 0.0018 29.9 12.4 16 185-200 42-57 (101)
21 1m1j_C Fibrinogen gamma chain; 73.4 3.7 0.00013 46.0 5.7 49 329-377 83-131 (409)
22 3ni0_A Bone marrow stromal ant 72.1 24 0.00082 32.6 9.6 67 183-269 21-87 (99)
23 2jee_A YIIU; FTSZ, septum, coi 71.9 5.2 0.00018 35.8 5.2 70 327-396 10-80 (81)
24 3k29_A Putative uncharacterize 71.1 68 0.0023 32.2 13.4 82 183-268 44-125 (169)
25 2v71_A Nuclear distribution pr 71.0 41 0.0014 34.2 12.2 37 279-315 138-174 (189)
26 3oja_B Anopheles plasmodium-re 69.6 62 0.0021 36.2 14.6 13 184-196 474-486 (597)
27 3mq9_A Bone marrow stromal ant 68.1 47 0.0016 36.4 13.0 47 217-266 414-460 (471)
28 2fxo_A Myosin heavy chain, car 65.8 78 0.0027 29.7 12.3 43 330-372 83-125 (129)
29 3efg_A Protein SLYX homolog; x 65.4 5.1 0.00017 35.3 3.8 46 332-377 9-54 (78)
30 3ghg_A Fibrinogen alpha chain; 61.5 34 0.0011 39.7 10.3 42 334-375 114-155 (562)
31 2ocy_A RAB guanine nucleotide 60.9 1.3E+02 0.0046 29.7 15.2 83 176-268 9-91 (154)
32 1lwu_C Fibrinogen gamma chain; 60.6 8.1 0.00028 42.0 5.1 49 329-377 4-52 (323)
33 1ic2_A Tropomyosin alpha chain 60.0 60 0.002 28.3 9.6 65 181-251 7-71 (81)
34 3i00_A HIP-I, huntingtin-inter 57.7 61 0.0021 30.7 9.9 44 147-193 10-53 (120)
35 1deq_A Fibrinogen (alpha chain 56.1 46 0.0016 37.2 10.0 43 332-374 115-157 (390)
36 2efr_A General control protein 54.6 1.7E+02 0.0058 28.9 15.9 67 164-243 26-92 (155)
37 3mq7_A Bone marrow stromal ant 49.4 1.8E+02 0.0062 27.7 11.4 63 181-266 26-88 (121)
38 1gd2_E Transcription factor PA 48.1 26 0.00088 30.5 5.2 40 331-370 30-69 (70)
39 3htk_B Structural maintenance 47.4 46 0.0016 28.4 6.7 69 302-370 4-72 (73)
40 2v66_B Nuclear distribution pr 47.0 21 0.0007 33.7 4.7 30 321-350 75-104 (111)
41 1m1j_C Fibrinogen gamma chain; 45.5 2.7E+02 0.0092 31.3 14.1 46 331-376 92-137 (409)
42 3oja_A Leucine-rich immune mol 43.3 2E+02 0.007 31.5 12.8 40 227-266 420-459 (487)
43 1m1j_B Fibrinogen beta chain; 43.0 96 0.0033 35.4 10.2 13 197-209 71-83 (464)
44 3w03_C DNA repair protein XRCC 42.5 38 0.0013 34.4 6.2 42 327-368 142-183 (184)
45 2eqb_B RAB guanine nucleotide 41.8 2.1E+02 0.0073 26.4 12.3 87 174-266 6-93 (97)
46 3hnw_A Uncharacterized protein 39.6 79 0.0027 30.4 7.7 47 153-199 83-129 (138)
47 3ol1_A Vimentin; structural ge 39.6 2.4E+02 0.0081 26.2 13.7 24 150-173 18-41 (119)
48 1t2k_D Cyclic-AMP-dependent tr 39.1 57 0.0019 26.9 5.8 37 331-367 23-59 (61)
49 1j1d_B Troponin T, TNT; THIN f 39.1 65 0.0022 30.0 6.7 62 305-370 28-89 (106)
50 3ghg_C Fibrinogen gamma chain; 39.0 40 0.0014 37.9 6.3 77 301-377 54-131 (411)
51 3mq9_A Bone marrow stromal ant 39.0 4.2E+02 0.014 28.9 14.9 35 228-262 436-470 (471)
52 1ytz_T Troponin T; muscle, THI 37.0 71 0.0024 29.8 6.6 48 323-370 42-89 (107)
53 2i1j_A Moesin; FERM, coiled-co 36.5 28 0.00096 40.3 4.8 41 328-368 410-450 (575)
54 3tnu_A Keratin, type I cytoske 36.3 2.5E+02 0.0087 26.2 10.5 40 147-186 33-72 (131)
55 3swk_A Vimentin; cytoskeleton, 36.1 2.3E+02 0.0079 25.1 9.7 20 153-172 1-20 (86)
56 3vmx_A Voltage-gated hydrogen 35.8 54 0.0018 26.9 4.9 35 325-359 6-40 (48)
57 3efg_A Protein SLYX homolog; x 34.0 93 0.0032 27.3 6.6 57 321-377 5-61 (78)
58 3trt_A Vimentin; cytoskeleton, 33.7 93 0.0032 26.4 6.5 41 337-377 35-75 (77)
59 3mq7_A Bone marrow stromal ant 33.6 3.2E+02 0.011 26.1 14.8 93 221-369 18-110 (121)
60 1avy_A Fibritin, gpwac M; bact 32.8 34 0.0012 30.0 3.5 39 335-373 6-44 (74)
61 1lwu_C Fibrinogen gamma chain; 32.5 69 0.0024 34.9 6.7 54 323-376 5-58 (323)
62 1zxa_A CGMP-dependent protein 32.0 24 0.00083 30.6 2.4 26 536-561 25-50 (67)
63 2jee_A YIIU; FTSZ, septum, coi 31.6 2.1E+02 0.0072 25.6 8.4 40 331-370 28-74 (81)
64 3tnu_B Keratin, type II cytosk 31.4 3.2E+02 0.011 25.4 11.6 39 147-185 31-69 (129)
65 1jnm_A Proto-oncogene C-JUN; B 31.1 46 0.0016 27.6 4.0 35 331-365 23-57 (62)
66 3i00_A HIP-I, huntingtin-inter 30.6 77 0.0026 30.0 5.9 65 297-371 17-81 (120)
67 3bas_A Myosin heavy chain, str 29.5 1.2E+02 0.004 27.0 6.6 74 300-373 12-85 (89)
68 3a2a_A Voltage-gated hydrogen 27.8 39 0.0013 28.4 2.9 29 533-561 22-50 (58)
69 1go4_E MAD1 (mitotic arrest de 26.9 1E+02 0.0034 28.6 5.7 35 226-260 10-44 (100)
70 2i1j_A Moesin; FERM, coiled-co 26.8 77 0.0026 36.7 6.2 118 147-268 330-459 (575)
71 1fzc_C Fibrin; blood coagulati 26.7 29 0.00099 37.7 2.5 38 336-373 3-40 (319)
72 3bas_A Myosin heavy chain, str 25.7 3.5E+02 0.012 23.9 10.6 24 142-165 4-27 (89)
73 2v4h_A NF-kappa-B essential mo 25.1 4.4E+02 0.015 24.9 10.5 73 179-268 30-102 (110)
74 3s9g_A Protein hexim1; cyclin 25.1 1E+02 0.0034 28.7 5.3 46 332-377 32-77 (104)
75 1gmj_A ATPase inhibitor; coile 25.0 1.3E+02 0.0045 27.1 6.0 41 330-373 40-80 (84)
76 3q8t_A Beclin-1; autophagy, AT 25.0 3.8E+02 0.013 24.1 9.2 69 148-236 28-96 (96)
77 2ocy_A RAB guanine nucleotide 24.7 5.2E+02 0.018 25.5 14.1 52 179-236 43-94 (154)
78 3hnw_A Uncharacterized protein 24.5 1.4E+02 0.0046 28.8 6.5 42 332-373 91-132 (138)
79 3a7p_A Autophagy protein 16; c 24.0 5.3E+02 0.018 25.5 11.3 31 222-252 104-134 (152)
80 1fzc_C Fibrin; blood coagulati 23.9 30 0.001 37.6 2.0 49 328-376 2-50 (319)
81 3qh9_A Liprin-beta-2; coiled-c 23.9 1.5E+02 0.0051 26.6 6.0 54 508-561 23-79 (81)
82 1nkp_B MAX protein, MYC proto- 23.8 1.4E+02 0.0048 25.8 5.9 40 332-371 42-81 (83)
83 2wt7_A Proto-oncogene protein 23.3 1.6E+02 0.0055 24.5 5.9 35 332-366 25-59 (63)
84 1j1d_C Troponin I, TNI; THIN f 22.8 1.8E+02 0.0062 28.1 6.9 36 331-366 73-108 (133)
85 1zxa_A CGMP-dependent protein 22.0 92 0.0031 27.0 4.2 45 324-368 12-56 (67)
86 2dnx_A Syntaxin-12; snare, HAB 20.6 66 0.0022 30.3 3.4 28 498-526 93-120 (130)
87 2wt7_B Transcription factor MA 20.6 1.3E+02 0.0046 27.3 5.2 42 336-377 47-88 (90)
88 2oqq_A Transcription factor HY 20.4 82 0.0028 25.2 3.3 25 353-377 12-36 (42)
89 3nmd_A CGMP dependent protein 20.2 1.1E+02 0.0036 27.0 4.3 38 330-367 33-70 (72)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.77 E-value=0.0015 Score=63.67 Aligned_cols=47 Identities=9% Similarity=0.102 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 043674 153 EIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNL 199 (891)
Q Consensus 153 EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~L 199 (891)
++..++..+..+..+-......+...-..+..++.++..++..+..+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (284)
T 1c1g_A 49 KLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLF 95 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444444444444444444444
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.28 E-value=0.012 Score=57.23 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=21.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 043674 155 DKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNL 199 (891)
Q Consensus 155 ~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~L 199 (891)
+.|++.+..|+.+-+.+.-.+...-.++..++..+..+...+..+
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~ 46 (284)
T 1c1g_A 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSL 46 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555444444444444444444444444444444
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.95 E-value=0.002 Score=79.52 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCN 198 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~ 198 (891)
.....|+..|++.|..++..-+.+.-.....-+++..|+.++..++.....
T Consensus 853 a~~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~ 903 (1184)
T 1i84_S 853 TRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQA 903 (1184)
T ss_dssp CTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777776655555444455555555555555555544433
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.61 E-value=0.82 Score=62.19 Aligned_cols=99 Identities=13% Similarity=0.174 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHH
Q 043674 154 IDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKL 233 (891)
Q Consensus 154 I~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kL 233 (891)
|..-+.=+..-+.|-+.....|+.+|+|+.+-..++..||++...++-+.. ..-+.|.+.|.++
T Consensus 1901 i~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~----------------~k~~ea~~~l~~i 1964 (3245)
T 3vkg_A 1901 INQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELD----------------VKNEQANQKLKQM 1964 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHH
Confidence 444444444445777778889999999999999999999999888863322 1223344444444
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043674 234 QEKQEQSLE---EAKTEQQRIIEAHEKFIKLRNRFIVN 268 (891)
Q Consensus 234 eekq~~s~e---eAk~e~eRv~~Ae~klkaLK~e~~~l 268 (891)
..++..+.+ .+..+.+.+.....++.+.|.++...
T Consensus 1965 ~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~d 2002 (3245)
T 3vkg_A 1965 VQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYAD 2002 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433322 23333444455555566666555433
No 5
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.77 E-value=0.51 Score=47.95 Aligned_cols=160 Identities=13% Similarity=0.194 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 171 AKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQR 250 (891)
Q Consensus 171 ~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~eeAk~e~eR 250 (891)
-+..|.+...+|..++.++.+.|+..+.|..| .+..+.+|.-.+..|+.+......+......+
T Consensus 15 wk~~~~~~~q~~~~le~El~EFqesSrELE~E----------------LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K 78 (189)
T 2v71_A 15 WKELSMKYKQSFQEARDELVEFQEGSRELEAE----------------LEAQLVQAEQRNRDLQADNQRLKYEVEALKEK 78 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777888889999999888888888533 23455555555555555555444443333333
Q ss_pred HHHHHHH----HHHHHHhhhccccchhhhccchhhhhhhcccccccccccccCchhhHHHHHHHHHHHHhhcCCCccchh
Q 043674 251 IIEAHEK----FIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLAPQGKSDVELSSKKIEDQVAVDSNESLAVT 326 (891)
Q Consensus 251 v~~Ae~k----lkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~ae~~e~Eve~L~eKIke~~E~~s~ssLsV~ 326 (891)
...+..+ +..|..++..+.. . ...+-.. -.+++-...-+.... =..+.|+.
T Consensus 79 ~~~~~~e~~~~~~~Lq~el~~l~~---~------------~~~l~~~-------ireLEq~NDdlEr~~---R~~~~Sle 133 (189)
T 2v71_A 79 LEHQYAQSYKQVSVLEDDLSQTRA---I------------KEQLHKY-------VRELEQANDDLERAK---RATIMSLE 133 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---H------------HHHHHHH-------HHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---H------------HHHHHHH-------HHHHHHHhhHHHHHH---HHHHhhHH
Confidence 3333222 2222222222211 0 0000000 111111111111111 12455889
Q ss_pred hHHHHHHHHHHHHHHhHHHhhhhH---HHHHHHHHHHHHHHHHHhhhh
Q 043674 327 QLVEKIDELVDKVVNLESAVSSQT---ALVKTLRSETDQLEGHISRLE 371 (891)
Q Consensus 327 e~AEkiDeLV~KVisLE~~vSsQt---a~i~RLr~E~deL~~kL~tLE 371 (891)
|+--|+++++++.+-||..+-... ..+.||+.|+-+|.-.|.-++
T Consensus 134 D~e~kln~aiEr~alLE~El~EKe~l~~~~QRLkdE~rDLk~El~v~~ 181 (189)
T 2v71_A 134 DFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQELAVRE 181 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987533 345677777777776665544
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.02 E-value=2 Score=44.51 Aligned_cols=73 Identities=10% Similarity=0.064 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 174 SYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIE 253 (891)
Q Consensus 174 qYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~ 253 (891)
..|.--.++..|+..+..++.++..|.++. -....++......+..++..+.....+......|+.+
T Consensus 12 ~LQ~lD~~i~~l~~~~~~lp~el~~le~~~-------------~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~ 78 (256)
T 3na7_A 12 EISHLDKEIDSLEPLIREKRKDLDKALNDK-------------EAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIAS 78 (256)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555554331 1233455555555666666666666666666666666
Q ss_pred HHHHHH
Q 043674 254 AHEKFI 259 (891)
Q Consensus 254 Ae~klk 259 (891)
.+.++.
T Consensus 79 ~~~~l~ 84 (256)
T 3na7_A 79 IQKKMS 84 (256)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.97 E-value=0.83 Score=62.18 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=41.7
Q ss_pred hhhccCCCh-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 043674 139 VSLKSGLNK-EEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNL 199 (891)
Q Consensus 139 ~~~~sgLsk-~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~L 199 (891)
.....||+| .+|...|+.||++|..+|.+=+...-.-+..|+++..=-.+....+..+...
T Consensus 1920 ~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~ 1981 (3245)
T 3vkg_A 1920 LHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDAREL 1981 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678876 6699999999999999998777777777777776654444444444444333
No 8
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.63 E-value=1.8 Score=39.56 Aligned_cols=92 Identities=16% Similarity=0.251 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHH
Q 043674 154 IDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKL 233 (891)
Q Consensus 154 I~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kL 233 (891)
++.+|+.+..|+.|+|.+.-.|+++=.++-.+|.....+-.++..|+- -++.....|.++
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~k--------------------k~~~lE~eld~~ 63 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEK--------------------QLRVTEDSRDQV 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--------------------HHHHHHHHHHHH
Confidence 688999999999999999988888877776666655555555555541 122333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043674 234 QEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRF 265 (891)
Q Consensus 234 eekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~ 265 (891)
++.+..+.........++..|+..+.+|...+
T Consensus 64 ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rri 95 (101)
T 3u1c_A 64 LEELHKSEDSLLFAEENAAKAESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555556666666666665443
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=92.56 E-value=5.9 Score=41.02 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043674 222 AVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFI 266 (891)
Q Consensus 222 a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~ 266 (891)
+|+.+...|..++.++....++.....+++..++..+..++..+.
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~ 135 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEML 135 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666665555555555555555554444
No 10
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.87 E-value=4.4 Score=36.78 Aligned_cols=46 Identities=20% Similarity=0.241 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 043674 154 IDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNL 199 (891)
Q Consensus 154 I~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~L 199 (891)
++.+++.+..|+.|+|.+.-.++++=.++-.+|.....+-.++..|
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL 49 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGL 49 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 6789999999999999998888888777666555444444333333
No 11
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=90.80 E-value=5.8 Score=39.72 Aligned_cols=49 Identities=20% Similarity=0.333 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 329 VEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 329 AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
.+.|-+|-.+|.+|...+-....-..++..+.-.|+.+|.+||.+|+.+
T Consensus 89 se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~ 137 (168)
T 3o0z_A 89 SEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNL 137 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345555556666666666666666666666666666666666666554
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.64 E-value=1.6 Score=48.98 Aligned_cols=50 Identities=22% Similarity=0.319 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 043674 325 VTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEK 374 (891)
Q Consensus 325 V~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k 374 (891)
+.+.-+.++.+-+.+..||..+..+...+.+|+.|+..+..+|+.|++..
T Consensus 532 ~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 532 ADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455678888899999999999999999999999999999999999874
No 13
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=87.46 E-value=14 Score=34.83 Aligned_cols=115 Identities=14% Similarity=0.121 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHH
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQ 227 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~ 227 (891)
...+.|+..+...|.+|..-=+.........=+++..|..+.+.+|..+..=++.+ + |.|-+.-.....-..+.
T Consensus 9 ~~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l---~---e~EE~~~~L~~~k~eLe 82 (129)
T 2fxo_A 9 AEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNL---A---DAEERCDQLIKNKIQLE 82 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---hHHHHHHHHHHHHHHHH
Confidence 44445555555555444432222222222223334444444444444433322221 1 23345545555666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043674 228 DTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVN 268 (891)
Q Consensus 228 EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l 268 (891)
..|..|++.++.-.+....+.....+++.++..|+..+..+
T Consensus 83 ~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 83 AKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888877644
No 14
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=87.20 E-value=8.2 Score=38.14 Aligned_cols=10 Identities=30% Similarity=0.674 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 043674 183 WEIEDQITEM 192 (891)
Q Consensus 183 ~~LE~qIs~~ 192 (891)
..||.|+..+
T Consensus 3 ~~lE~qlkea 12 (155)
T 2efr_A 3 KQLEDKVEEL 12 (155)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.07 E-value=0.81 Score=56.62 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=21.7
Q ss_pred HhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 043674 341 NLESAVSSQTALVKTLRSETDQLEGHISRLEGE 373 (891)
Q Consensus 341 sLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~ 373 (891)
.|+..|++-+.+...|+..+++|...+.+.+++
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~ 1052 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELNRRIHDQAKE 1052 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666777777777777666666553
No 16
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=86.64 E-value=13 Score=37.26 Aligned_cols=76 Identities=18% Similarity=0.172 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHH
Q 043674 150 ALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDT 229 (891)
Q Consensus 150 Ae~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~Et 229 (891)
++..=+.|++.+..||+.=+.-+..+.++-+.+.+|+..|..++.++..+. .+.-++....+++++.
T Consensus 60 L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k-------------~~~~k~~~e~r~L~Ek 126 (168)
T 3o0z_A 60 LENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLK-------------HNLEKVEGERKEAQDM 126 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHH
Confidence 344555666667777776677777777777777777777777777777764 2334566677777777
Q ss_pred HHHHHHHHH
Q 043674 230 LSKLQEKQE 238 (891)
Q Consensus 230 L~kLeekq~ 238 (891)
|+.|+..-.
T Consensus 127 l~~lEKe~a 135 (168)
T 3o0z_A 127 LNHSEKEKN 135 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776544
No 17
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=80.35 E-value=7.5 Score=34.02 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=27.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 043674 155 DKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQI 189 (891)
Q Consensus 155 ~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qI 189 (891)
+.+|+.+..|+.|+|.+.-.++++-.++-..|...
T Consensus 2 ~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~ 36 (81)
T 1ic2_A 2 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERS 36 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999998888888777776555443
No 18
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=76.13 E-value=34 Score=42.61 Aligned_cols=50 Identities=14% Similarity=0.282 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Q 043674 149 EALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDE 202 (891)
Q Consensus 149 eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDE 202 (891)
..+.||..|++.+..|+.. .......-+++.+|+.++..+.+++..+..|
T Consensus 957 ~~~~e~~~L~~~l~~le~~----~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke 1006 (1080)
T 2dfs_A 957 TYSTETEKLRSDVERLRMS----EEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006 (1080)
T ss_dssp HHHHHHHHHHHTHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777766642 2223344456666666666665555555433
No 19
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=75.57 E-value=36 Score=30.80 Aligned_cols=12 Identities=17% Similarity=0.318 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 043674 250 RIIEAHEKFIKL 261 (891)
Q Consensus 250 Rv~~Ae~klkaL 261 (891)
++..|+.++.+|
T Consensus 80 ~~~~AE~evasL 91 (101)
T 3u59_A 80 KATDAEAEVASL 91 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333344443
No 20
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=73.38 E-value=52 Score=29.91 Aligned_cols=16 Identities=19% Similarity=0.441 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhhchh
Q 043674 185 IEDQITEMQAKVCNLQ 200 (891)
Q Consensus 185 LE~qIs~~Qe~v~~Lq 200 (891)
+|.+|..+|..+..|.
T Consensus 42 ~E~Ei~sL~kk~~~lE 57 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3333444444443333
No 21
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=73.36 E-value=3.7 Score=46.02 Aligned_cols=49 Identities=12% Similarity=0.289 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 329 VEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 329 AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
..+...+++.|+.||..+..+.+.|.+|+..+..++.+|..|+..-..|
T Consensus 83 tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 83 TQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5567788999999999999999999999998888888888887765555
No 22
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=72.09 E-value=24 Score=32.55 Aligned_cols=67 Identities=31% Similarity=0.372 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 183 WEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLR 262 (891)
Q Consensus 183 ~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK 262 (891)
.=|+.+++.+|+ +| +.++++...|+.|+..|.+-++.-.-....--.|+++.+.+++.|+
T Consensus 21 ~lLq~qLT~Aq~---~l-----------------~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Ln 80 (99)
T 3ni0_A 21 HLLQRQLTRTQD---SL-----------------LQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLN 80 (99)
T ss_dssp HHHHHHHHHHHH---HH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 347778887773 22 2456778899999999887665443333334568999999999999
Q ss_pred Hhhhccc
Q 043674 263 NRFIVNQ 269 (891)
Q Consensus 263 ~e~~~l~ 269 (891)
+.+-...
T Consensus 81 q~Lqda~ 87 (99)
T 3ni0_A 81 QELENLR 87 (99)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9877443
No 23
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=71.87 E-value=5.2 Score=35.85 Aligned_cols=70 Identities=16% Similarity=0.262 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCcc-ccchhhHHHHhcc
Q 043674 327 QLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESLIADSDA-TSSADYLSEKLQS 396 (891)
Q Consensus 327 e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L~~ds~~-~~~l~~ls~kL~~ 396 (891)
.+=.||+++|++|.-|.-.|..-...-..|..++.++...-..|..+..-|-..-+. ...|+.|.+|+..
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e~ 80 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEE 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344567777776666555444444444444444444322222233333333211111 5667777777654
No 24
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=71.12 E-value=68 Score=32.19 Aligned_cols=82 Identities=20% Similarity=0.171 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 183 WEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLR 262 (891)
Q Consensus 183 ~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK 262 (891)
.+..+-.++-+.....|.++++.|+-+. ..+|...=++-+.+.++.|+.+...+.+....+.+++..|+..+..-.
T Consensus 44 ~~r~k~~~h~~~k~~qlre~~d~gtt~~----~i~~m~~yI~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qAr 119 (169)
T 3k29_A 44 SERDKVKNHYMQKIRQLREQLDDGTTSD----AILKMKAYIKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRR 119 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666777888888899874 677777778889999999999999999999999999999999988888
Q ss_pred Hhhhcc
Q 043674 263 NRFIVN 268 (891)
Q Consensus 263 ~e~~~l 268 (891)
++..+.
T Consensus 120 ke~eKf 125 (169)
T 3k29_A 120 KEEEKT 125 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877766
No 25
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=71.01 E-value=41 Score=34.21 Aligned_cols=37 Identities=14% Similarity=-0.087 Sum_probs=15.7
Q ss_pred hhhhhhhcccccccccccccCchhhHHHHHHHHHHHH
Q 043674 279 WEENENKTTAGSELKADLAPQGKSDVELSSKKIEDQV 315 (891)
Q Consensus 279 ~~qq~le~is~lE~~i~~ae~~e~Eve~L~eKIke~~ 315 (891)
.|.+.++.+..|+.++..-+....++|.|+..+..+-
T Consensus 138 kln~aiEr~alLE~El~EKe~l~~~~QRLkdE~rDLk 174 (189)
T 2v71_A 138 RLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLR 174 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677777777666554445555556665555443
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.59 E-value=62 Score=36.25 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHh
Q 043674 184 EIEDQITEMQAKV 196 (891)
Q Consensus 184 ~LE~qIs~~Qe~v 196 (891)
..|..+..++.++
T Consensus 474 ~~~~~l~~~~~~i 486 (597)
T 3oja_B 474 QQEQLLQGLHAEI 486 (597)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3333333333333
No 27
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=68.11 E-value=47 Score=36.42 Aligned_cols=47 Identities=11% Similarity=0.172 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043674 217 LIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFI 266 (891)
Q Consensus 217 Lmae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~ 266 (891)
..++++-.+|..|+.-|++-++.-...+ ..||++.+.+++.|.+++.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 460 (471)
T 3mq9_A 414 QDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3667788899999998887655332221 1477777777777776655
No 28
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=65.76 E-value=78 Score=29.72 Aligned_cols=43 Identities=26% Similarity=0.313 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 043674 330 EKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEG 372 (891)
Q Consensus 330 EkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe 372 (891)
.+|.++...+-..|-....-++.-++|..++.+|...|..+|.
T Consensus 83 ~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 83 AKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555666666666666666666666666666653
No 29
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=65.39 E-value=5.1 Score=35.33 Aligned_cols=46 Identities=22% Similarity=0.137 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 332 IDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 332 iDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
.+++-+.|..||..+..|...|+.|+..+-..+..|..|......|
T Consensus 9 ~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L 54 (78)
T 3efg_A 9 DQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 54 (78)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666666655554433
No 30
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=61.53 E-value=34 Score=39.69 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=22.3
Q ss_pred HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 043674 334 ELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKE 375 (891)
Q Consensus 334 eLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~ 375 (891)
+|-.+|.-|+..|-.|=.+|.-|+.-++++..+|+.||-|..
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555555555433
No 31
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=60.89 E-value=1.3e+02 Score=29.66 Aligned_cols=83 Identities=13% Similarity=0.110 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 176 ERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAH 255 (891)
Q Consensus 176 qqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae 255 (891)
=+++.|.++||..+..+..+......... ..| .....|..+...++....+..........+..+-..|+
T Consensus 9 I~Ain~qs~LeD~L~~~R~el~~~~~ri~---~lE-------~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE 78 (154)
T 2ocy_A 9 IESVDKQSHLEEQLNKSLKTIASQKAAIE---NYN-------QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAE 78 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTH-------HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHH---HHH-------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999888776643211 000 11123444444555555666666666666666666666
Q ss_pred HHHHHHHHhhhcc
Q 043674 256 EKFIKLRNRFIVN 268 (891)
Q Consensus 256 ~klkaLK~e~~~l 268 (891)
.....+-+++..|
T Consensus 79 ~~~~~ie~ElEeL 91 (154)
T 2ocy_A 79 EEADKLNKEVEDL 91 (154)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665544
No 32
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=60.61 E-value=8.1 Score=42.05 Aligned_cols=49 Identities=16% Similarity=0.225 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 329 VEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 329 AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
..|+..+++.|+.||..|..+.++|..|+..+..++.+|..|+..-..|
T Consensus 4 ~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 4 QKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888888888888888888888888887777654444
No 33
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=59.99 E-value=60 Score=28.26 Aligned_cols=65 Identities=12% Similarity=0.128 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 181 KYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRI 251 (891)
Q Consensus 181 K~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv 251 (891)
|+..|+.+.-.++..+..++... .+.+.++..++..+.+++-+|..|+..++.+.+.......+.
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l------~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADK------KAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555553221 122234444444444444444444444444444443333333
No 34
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=57.66 E-value=61 Score=30.70 Aligned_cols=44 Identities=25% Similarity=0.374 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 147 KEEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQ 193 (891)
Q Consensus 147 k~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Q 193 (891)
..+=...|+.|+.+|-.|..|-+.++..++..+..| +.+|+.++
T Consensus 10 ~d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql---~~~i~~Le 53 (120)
T 3i00_A 10 KDEKDHLIERLYREISGLKAQLENMKTESQRVVLQL---KGHVSELE 53 (120)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 344457899999999999999999999999876543 55555554
No 35
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=56.09 E-value=46 Score=37.17 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 043674 332 IDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEK 374 (891)
Q Consensus 332 iDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k 374 (891)
-++|-.+|+-|...|..|=..|++|+.-++.+..+|+.||-+.
T Consensus 115 s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 115 NEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888889999999998899999999999999999999885
No 36
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=54.64 E-value=1.7e+02 Score=28.89 Aligned_cols=67 Identities=16% Similarity=0.177 Sum_probs=34.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 164 LQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEE 243 (891)
Q Consensus 164 LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~ee 243 (891)
++.+=+-+--..+.+-.|+.+||.++..+-..++.|. +..-++...-....++|..|..+++.+..-
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE-------------~seekasqrEd~yEeqIk~L~~kLKEAE~R 92 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLE-------------AQAEKYSQKEDKYEEEIKVLSDKLKEAETR 92 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555556666666666666655555552 333344444444444555555444444433
No 37
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=49.40 E-value=1.8e+02 Score=27.74 Aligned_cols=63 Identities=16% Similarity=0.235 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 181 KYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIK 260 (891)
Q Consensus 181 K~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klka 260 (891)
--.=|+.+++.+|+ +| +.++++...|..|+..|..-++. +.|.. ..++++.+.+++.
T Consensus 26 ~T~lLq~qLTqAQe---~l-----------------~~~eaQAaTCNqTV~tL~~SL~~--ekaq~-q~~vqeLqgEI~~ 82 (121)
T 3mq7_A 26 VTHLLQQELTEAQK---GF-----------------QDVEAQAATANHTVMALMASLDA--EKAQG-QKKVEELEGEITT 82 (121)
T ss_dssp HHHHHHHHHHHHHH---HH-----------------HHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HH-----------------HHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHH
Confidence 33447788888873 22 24566778899888888765543 22222 5567777777777
Q ss_pred HHHhhh
Q 043674 261 LRNRFI 266 (891)
Q Consensus 261 LK~e~~ 266 (891)
|++.+-
T Consensus 83 Lnq~Lq 88 (121)
T 3mq7_A 83 LNHKLQ 88 (121)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776655
No 38
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=48.06 E-value=26 Score=30.46 Aligned_cols=40 Identities=33% Similarity=0.352 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhh
Q 043674 331 KIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRL 370 (891)
Q Consensus 331 kiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tL 370 (891)
.|.+|-.+|..|+....+.+.+...|+..+..|...+..|
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5778888888888887777777778888887777776654
No 39
>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=47.43 E-value=46 Score=28.42 Aligned_cols=69 Identities=3% Similarity=0.041 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhh
Q 043674 302 SDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRL 370 (891)
Q Consensus 302 ~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tL 370 (891)
.+|..+..+|.+.++.-+...+.+.....++.+|-.++...+..+..+...+.-+..-+..+..+...|
T Consensus 4 ~ki~~~e~kI~~~~~~~~~~l~~~~~~~~~l~~~~~el~~~~i~~lE~~N~~~s~~~li~~~~~r~~el 72 (73)
T 3htk_B 4 QKIKDIDDQIQQLLLKQRHLLSKMASSMKSLKNCQKELISTQILQFEAQNMDVSMNDVIGFFNEREADL 72 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHhHHHHHHHHHHHHHHhh
Confidence 456678899999999888888899999999999999999999999999888888887777777666554
No 40
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=46.96 E-value=21 Score=33.65 Aligned_cols=30 Identities=10% Similarity=0.341 Sum_probs=26.0
Q ss_pred CccchhhHHHHHHHHHHHHHHhHHHhhhhH
Q 043674 321 ESLAVTQLVEKIDELVDKVVNLESAVSSQT 350 (891)
Q Consensus 321 ssLsV~e~AEkiDeLV~KVisLE~~vSsQt 350 (891)
.+.|+.||-.|+.+.+++.+-||.++-...
T Consensus 75 t~~SLeD~E~k~n~aiErnalLE~El~EKe 104 (111)
T 2v66_B 75 TIVSLEDFEQRLNQAIERNAFLESELDEKE 104 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999987443
No 41
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=45.47 E-value=2.7e+02 Score=31.26 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 043674 331 KIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKES 376 (891)
Q Consensus 331 kiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~ 376 (891)
++..+...|.+-+..+..-+.++.-++..|+.|..+|..|+..|..
T Consensus 92 ~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~~~ 137 (409)
T 1m1j_C 92 EIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQE 137 (409)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhc
Confidence 3444444455555555555555555666666667777777766543
No 42
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=43.34 E-value=2e+02 Score=31.49 Aligned_cols=40 Identities=13% Similarity=0.109 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043674 227 QDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFI 266 (891)
Q Consensus 227 ~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~ 266 (891)
.+..+.+|.++.....+.+...++++..+++-..++..+.
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (487)
T 3oja_A 420 EEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNG 459 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhh
Confidence 3344444444444444444444444444444444444333
No 43
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=43.03 E-value=96 Score=35.40 Aligned_cols=13 Identities=23% Similarity=0.187 Sum_probs=7.2
Q ss_pred hchhhhhccCccc
Q 043674 197 CNLQDEFGIGTVI 209 (891)
Q Consensus 197 ~~LqDEf~~~a~I 209 (891)
|.++++||..-..
T Consensus 71 ~~~~~~~G~~CPT 83 (464)
T 1m1j_B 71 KHPLDELGVLCPT 83 (464)
T ss_dssp ECSSTTTCEEEEC
T ss_pred cccCCCccCcCCC
Confidence 3356666655543
No 44
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=42.55 E-value=38 Score=34.37 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHh
Q 043674 327 QLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHIS 368 (891)
Q Consensus 327 e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~ 368 (891)
=+.|-||-|+++|.+|...+.+-+.+-+||+.|.++..+++.
T Consensus 142 ~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 142 VIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355679999999999999999999999999999998887764
No 45
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=41.81 E-value=2.1e+02 Score=26.36 Aligned_cols=87 Identities=9% Similarity=0.161 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 043674 174 SYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEK-QEQSLEEAKTEQQRII 252 (891)
Q Consensus 174 qYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeek-q~~s~eeAk~e~eRv~ 252 (891)
.|+..=++|..|+.+.++...+...|++++. ..-++...++...+.....|..|... ++.+.+=+.....--.
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~------eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~ 79 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIA------KENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKY 79 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666666666654433 22234445556777777777777654 2323222222222222
Q ss_pred HHHHHHHHHHHhhh
Q 043674 253 EAHEKFIKLRNRFI 266 (891)
Q Consensus 253 ~Ae~klkaLK~e~~ 266 (891)
.++.+...|+.++.
T Consensus 80 ~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 80 AIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33444455555444
No 46
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=39.63 E-value=79 Score=30.40 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 043674 153 EIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNL 199 (891)
Q Consensus 153 EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~L 199 (891)
+|..+.++|..|..|--.....|+..-..+.+|..++..+|+++..|
T Consensus 83 ~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333
No 47
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=39.56 E-value=2.4e+02 Score=26.25 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHH
Q 043674 150 ALEEIDKLQKGILGLQTEKEFAKS 173 (891)
Q Consensus 150 Ae~EI~~LQk~il~LQtEKEa~~l 173 (891)
=+.+|..|+..|..+..||--+.+
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~l 41 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEV 41 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777888887777777654433
No 48
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=39.14 E-value=57 Score=26.95 Aligned_cols=37 Identities=27% Similarity=0.273 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 043674 331 KIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHI 367 (891)
Q Consensus 331 kiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL 367 (891)
.+++|..+|-.|+..-..-.+.|..|+.|+..|...|
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777777777777777777777777777766544
No 49
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=39.10 E-value=65 Score=30.02 Aligned_cols=62 Identities=23% Similarity=0.212 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhh
Q 043674 305 ELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRL 370 (891)
Q Consensus 305 e~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tL 370 (891)
.-|.+.++-+. - +.|+..+|-+++.+|-++|..||..----..-|.|-.-||.+|..++..|
T Consensus 28 kiLaER~kpL~--i--d~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 28 KILAERRKVLA--I--DHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHH--H--TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCCC--C--CCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 33555554442 1 45577788888888888888888887777777777778888888888777
No 50
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=38.98 E-value=40 Score=37.90 Aligned_cols=77 Identities=13% Similarity=0.197 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHHHHhhcCCCccchhhHHHHH-HHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 301 KSDVELSSKKIEDQVAVDSNESLAVTQLVEKI-DELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 301 e~Eve~L~eKIke~~E~~s~ssLsV~e~AEki-DeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
-.+...+...|+......-.+.-...+.+-++ ...+++|..||..+..+.++|.-|+..++....+|+.|++.-..|
T Consensus 54 Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l 131 (411)
T 3ghg_C 54 TSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQL 131 (411)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555554443322222222333333 447777778888888888888777777777777776666665555
No 51
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=38.95 E-value=4.2e+02 Score=28.89 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 228 DTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLR 262 (891)
Q Consensus 228 EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK 262 (891)
-+.+.-+.+++..+-+...++..+++++.+++.+|
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 436 AEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444445677777777778888888888877765
No 52
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=36.97 E-value=71 Score=29.80 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=26.6
Q ss_pred cchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhh
Q 043674 323 LAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRL 370 (891)
Q Consensus 323 LsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tL 370 (891)
|+..+|-+++.+|-++|..||..----...|.|-.-||.+|..++..|
T Consensus 42 l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 42 LNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 344455555555555555555555455555555555566666666555
No 53
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=36.55 E-value=28 Score=40.30 Aligned_cols=41 Identities=15% Similarity=0.258 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHh
Q 043674 328 LVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHIS 368 (891)
Q Consensus 328 ~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~ 368 (891)
|+.++.+.-.+|.-|+.++....++..+|+.+...-+..+.
T Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~ 450 (575)
T 2i1j_A 410 LEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQD 450 (575)
T ss_dssp --------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666777777777777777776665555443
No 54
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=36.34 E-value=2.5e+02 Score=26.23 Aligned_cols=40 Identities=18% Similarity=0.102 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 043674 147 KEEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIE 186 (891)
Q Consensus 147 k~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE 186 (891)
-..+..||..|+..|-.|+.|=+..+.+...--..+.++|
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e 72 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETK 72 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3457788999999999999988877766543333344433
No 55
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=36.10 E-value=2.3e+02 Score=25.10 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhhhhHHHHH
Q 043674 153 EIDKLQKGILGLQTEKEFAK 172 (891)
Q Consensus 153 EI~~LQk~il~LQtEKEa~~ 172 (891)
||..|+..|..+..||-.+.
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~ 20 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVE 20 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHH
Confidence 46677777777777775443
No 56
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=35.83 E-value=54 Score=26.89 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH
Q 043674 325 VTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSE 359 (891)
Q Consensus 325 V~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E 359 (891)
+..+.+-+++||.+|.-||.--+...-+|.||+.-
T Consensus 6 l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~L 40 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKL 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 45566778999999999999888888888888764
No 57
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=33.99 E-value=93 Score=27.34 Aligned_cols=57 Identities=16% Similarity=0.099 Sum_probs=37.4
Q ss_pred CccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 321 ESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 321 ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
.+++..++.++|.+|-.||.=+|..|-.-+..|-+...+|+.|+.+|+-|-+.-..+
T Consensus 5 ~~~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 5 LSPRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356667788889999888888887777666666666666666666666666554433
No 58
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=33.68 E-value=93 Score=26.41 Aligned_cols=41 Identities=17% Similarity=0.328 Sum_probs=30.8
Q ss_pred HHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 337 DKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 337 ~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
.|+-.|-..+..+.+.+...+.|+.+|.-.|+.|+-+...|
T Consensus 35 ~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 35 SKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666777777888888888888888888888888665443
No 59
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=33.57 E-value=3.2e+02 Score=26.06 Aligned_cols=93 Identities=18% Similarity=0.260 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhcccccccccccccCc
Q 043674 221 TAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLAPQG 300 (891)
Q Consensus 221 ~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l~~~~~eke~~~~qq~le~is~lE~~i~~ae~~ 300 (891)
.+-+.|+..--=|+.++.++++-.+.-.-.+.---..+.+|+..+.+..+
T Consensus 18 rAq~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~eka------------------------------ 67 (121)
T 3mq7_A 18 RAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKA------------------------------ 67 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------
Confidence 36778999888899999888877666655555555666666644332211
Q ss_pred hhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q 043674 301 KSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISR 369 (891)
Q Consensus 301 e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~t 369 (891)
.. -.+|.+|-..|-.|-..+--+.+.|+|||.++..|..+|..
T Consensus 68 ------------q~--------------q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 68 ------------QG--------------QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp ------------HH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ------------HH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 00 01366666677777777778889999999999999988754
No 60
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=32.84 E-value=34 Score=30.05 Aligned_cols=39 Identities=23% Similarity=0.426 Sum_probs=35.3
Q ss_pred HHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 043674 335 LVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGE 373 (891)
Q Consensus 335 LV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~ 373 (891)
|.++|-.+|+-+.+-+-.|+.+..-+..++.+|+.||.-
T Consensus 6 l~nsVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~a 44 (74)
T 1avy_A 6 LTNKIKAIETDIASVRQEVNTAKGNISSLQGDVQALQEA 44 (74)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccchhcccccchhhhheeeccccchhhhhhhhhHHHHhc
Confidence 568899999999999999999999999999999999974
No 61
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=32.48 E-value=69 Score=34.89 Aligned_cols=54 Identities=9% Similarity=0.161 Sum_probs=42.4
Q ss_pred cchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 043674 323 LAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKES 376 (891)
Q Consensus 323 LsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~ 376 (891)
.++.-|-++|.++-..|++.+..+..-++.++.++..|++|+.+|..|+..|..
T Consensus 5 ~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~ 58 (323)
T 1lwu_C 5 KTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSR 58 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455566677777778888888888888888888888888888888888877653
No 62
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=31.99 E-value=24 Score=30.58 Aligned_cols=26 Identities=38% Similarity=0.612 Sum_probs=23.4
Q ss_pred HHHHHHhhhhccchHHHHHHHHhhcc
Q 043674 536 LQIRELENAVAFRDEEIHALRQKLGT 561 (891)
Q Consensus 536 lqirELk~Ana~KDeEI~sLr~~l~~ 561 (891)
.-|++|...+.-||.||+-||..|.-
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999987
No 63
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=31.63 E-value=2.1e+02 Score=25.63 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhHHHhhhhHH-------HHHHHHHHHHHHHHHHhhh
Q 043674 331 KIDELVDKVVNLESAVSSQTA-------LVKTLRSETDQLEGHISRL 370 (891)
Q Consensus 331 kiDeLV~KVisLE~~vSsQta-------~i~RLr~E~deL~~kL~tL 370 (891)
.|++|=.+-..|...+....+ ++++|+.|...-+.+|+.|
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666665555443 5566666666666666655
No 64
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=31.44 E-value=3.2e+02 Score=25.40 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 043674 147 KEEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEI 185 (891)
Q Consensus 147 k~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~L 185 (891)
-..+..||..|+..|-.|+.|=+..+.+-..--..+.+.
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~ 69 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADA 69 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 455788999999999999999888877654333334433
No 65
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=31.09 E-value=46 Score=27.62 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHH
Q 043674 331 KIDELVDKVVNLESAVSSQTALVKTLRSETDQLEG 365 (891)
Q Consensus 331 kiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~ 365 (891)
.+++|..+|-.|+..-..-...|..|+.|+..|..
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666665555555555555555544433
No 66
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=30.57 E-value=77 Score=30.01 Aligned_cols=65 Identities=14% Similarity=0.212 Sum_probs=50.8
Q ss_pred ccCchhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 043674 297 APQGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLE 371 (891)
Q Consensus 297 ae~~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLE 371 (891)
++.+..+|+.|+..+..+--+. ... |.+|-..|..||..+..+..+......|.+.|...+..|+
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~--q~~--------v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTES--QRV--------VLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888887776554 333 8899999999999999999988888888888877776664
No 67
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=29.51 E-value=1.2e+02 Score=27.01 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=51.2
Q ss_pred chhhHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 043674 300 GKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGE 373 (891)
Q Consensus 300 ~e~Eve~L~eKIke~~E~~s~ssLsV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~ 373 (891)
.+.++..+.++++..-+.-....-...++.++...|+.....|-..+..+.....||...-.+|..+|+.|++.
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~r 85 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444322234466677777888888888887778888888888888888888888888754
No 68
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=27.84 E-value=39 Score=28.41 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhhhccchHHHHHHHHhhcc
Q 043674 533 ELALQIRELENAVAFRDEEIHALRQKLGT 561 (891)
Q Consensus 533 E~~lqirELk~Ana~KDeEI~sLr~~l~~ 561 (891)
-++.+|.+|+-.++.|+.||--|+.+|--
T Consensus 22 ~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 22 QLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999998853
No 69
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=26.88 E-value=1e+02 Score=28.63 Aligned_cols=35 Identities=11% Similarity=0.076 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 226 CQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIK 260 (891)
Q Consensus 226 c~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klka 260 (891)
+.+.+.+|..+++....+-..+.+++..++-+++.
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888898888888865
No 70
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=26.76 E-value=77 Score=36.70 Aligned_cols=118 Identities=18% Similarity=0.222 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHH-----H-
Q 043674 147 KEEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIA-----A- 220 (891)
Q Consensus 147 k~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLma-----e- 220 (891)
+..|+-+-..|...+..++.|-..+.-....+-++...|+.+...+|++...|.-+.. .|+-+ -+.|.. +
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~-~~e~~---~~~l~~~~~~~~~ 405 (575)
T 2i1j_A 330 RERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQN-ELQAM---MQRLEETKNMEAA 405 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---HHHHHHHHHhHHH
Confidence 3668888888999999999888888888888888888899999999999998864422 22211 111111 1
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043674 221 ------TAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVN 268 (891)
Q Consensus 221 ------~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~klkaLK~e~~~l 268 (891)
.....-...+..|.+.-..-..+|....+.+..|+...+.-+.++...
T Consensus 406 e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~~~ 459 (575)
T 2i1j_A 406 ERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAA 459 (575)
T ss_dssp ------------------------------------CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 133344455666667777777777777777777777777666666543
No 71
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=26.68 E-value=29 Score=37.74 Aligned_cols=38 Identities=11% Similarity=0.295 Sum_probs=19.3
Q ss_pred HHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 043674 336 VDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGE 373 (891)
Q Consensus 336 V~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~ 373 (891)
++-|..||..|...+++|..|+..++.++++|..|+..
T Consensus 3 ~~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~ 40 (319)
T 1fzc_C 3 LEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEK 40 (319)
T ss_dssp -------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666655544
No 72
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=25.68 E-value=3.5e+02 Score=23.91 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=11.2
Q ss_pred ccCCChHHHHHHHHHHHHHHHhhh
Q 043674 142 KSGLNKEEALEEIDKLQKGILGLQ 165 (891)
Q Consensus 142 ~sgLsk~eAe~EI~~LQk~il~LQ 165 (891)
++-|+..+.+.|+..+.+.+.++.
T Consensus 4 KPLL~~~~~eeEm~~~eeel~~lk 27 (89)
T 3bas_A 4 MPLLSIARQEEEMKEQLKQMDKMK 27 (89)
T ss_dssp ------CHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhHHHHHHHHHHHHHHH
Confidence 344555666667766666555554
No 73
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=25.12 E-value=4.4e+02 Score=24.86 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 179 YEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKF 258 (891)
Q Consensus 179 leK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~~Ae~kl 258 (891)
..++...|..+..+|.+...|..+ -.+...+.|+|.-|+.+......+=..+..--.++..+.
T Consensus 30 ~~~L~~AEeaL~~Kq~~idelk~e-----------------i~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eK 92 (110)
T 2v4h_A 30 RQQLQQAEEALVAKQELIDKLKEE-----------------AEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKK 92 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHH
Confidence 345666777778888888888533 123666778999999988777766665555445555555
Q ss_pred HHHHHhhhcc
Q 043674 259 IKLRNRFIVN 268 (891)
Q Consensus 259 kaLK~e~~~l 268 (891)
..|...+..+
T Consensus 93 e~L~~ql~~L 102 (110)
T 2v4h_A 93 EYLQEQLEQL 102 (110)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 74
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=25.09 E-value=1e+02 Score=28.72 Aligned_cols=46 Identities=28% Similarity=0.404 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 332 IDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 332 iDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
-++||..-+.||..++.....-+||+......-.+|+.|+.+..-|
T Consensus 32 KqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL 77 (104)
T 3s9g_A 32 KQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRL 77 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 3567777778888888888888888886666666666666554444
No 75
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=24.98 E-value=1.3e+02 Score=27.10 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 043674 330 EKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGE 373 (891)
Q Consensus 330 EkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~ 373 (891)
|++..|=.++ +..+..+..+|++|..+|+....+|+.|+.+
T Consensus 40 EqL~~LKkkl---~~el~~h~~ei~~le~~i~rhk~~i~~l~~~ 80 (84)
T 1gmj_A 40 EQLAALKKHK---ENEISHHAKEIERLQKEIERHKQSIKKLKQS 80 (84)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3344444443 6678889999999999999999999999864
No 76
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=24.97 E-value=3.8e+02 Score=24.14 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHH
Q 043674 148 EEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQ 227 (891)
Q Consensus 148 ~eAe~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~ 227 (891)
.+.+.|=..|-.+|.+++.|.+...-+-.+..-.|..+-.++...|.+.+.|. .+|.-++
T Consensus 28 ~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~--------------------~q~~~~~ 87 (96)
T 3q8t_A 28 EDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVE--------------------NQMRYAQ 87 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHH
Q ss_pred HHHHHHHHH
Q 043674 228 DTLSKLQEK 236 (891)
Q Consensus 228 EtL~kLeek 236 (891)
-.|.+|+.+
T Consensus 88 ~qLdkL~K~ 96 (96)
T 3q8t_A 88 MQLDKLKKK 96 (96)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHhhcC
No 77
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.66 E-value=5.2e+02 Score=25.53 Aligned_cols=52 Identities=12% Similarity=0.243 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 179 YEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEK 236 (891)
Q Consensus 179 leK~~~LE~qIs~~Qe~v~~LqDEf~~~a~IED~EARaLmae~a~ksc~EtL~kLeek 236 (891)
=++|..|+.+.++...+...|++++. ..-++...++.........|..|..-
T Consensus 43 r~~~~~l~~~~~~~~~e~~~L~~~l~------~E~~~R~~aE~~~~~ie~ElEeLTas 94 (154)
T 2ocy_A 43 KEDYNTLKRELSDRDDEVKRLREDIA------KENELRTKAEEEADKLNKEVEDLTAS 94 (154)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHH------HHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555544432 11233344455666666666666543
No 78
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=24.48 E-value=1.4e+02 Score=28.79 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 043674 332 IDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGE 373 (891)
Q Consensus 332 iDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~ 373 (891)
+-.|=+.++++...+-.....+..|+.+++.|+.++..||.+
T Consensus 91 ~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 91 IYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666677777777777777777777777644
No 79
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=24.03 E-value=5.3e+02 Score=25.48 Aligned_cols=31 Identities=23% Similarity=0.076 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 222 AVKSCQDTLSKLQEKQEQSLEEAKTEQQRII 252 (891)
Q Consensus 222 a~ksc~EtL~kLeekq~~s~eeAk~e~eRv~ 252 (891)
+|..++-.+.-++.+....+.|...+.+|-.
T Consensus 104 El~aLqlq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 104 ALISGTIENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666777777777766666654
No 80
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=23.92 E-value=30 Score=37.65 Aligned_cols=49 Identities=12% Similarity=0.260 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 043674 328 LVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKES 376 (891)
Q Consensus 328 ~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~ 376 (891)
|-|.|.++-.+|++++..+..-++.++-|+..|..|..+|..|+..|..
T Consensus 2 ~~~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~ 50 (319)
T 1fzc_C 2 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 50 (319)
T ss_dssp --------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455667777788888888888888888888888888888888887654
No 81
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=23.90 E-value=1.5e+02 Score=26.65 Aligned_cols=54 Identities=22% Similarity=0.403 Sum_probs=42.3
Q ss_pred HHHhhcHHHHHHhHHHHhhhhhhHHHH---HHHHHHHhhhhccchHHHHHHHHhhcc
Q 043674 508 SVLHNYTDVRRKLSVMEKKNRDRFIEL---ALQIRELENAVAFRDEEIHALRQKLGT 561 (891)
Q Consensus 508 svLrNYKdvk~kL~evEkKNqd~~~E~---~lqirELk~Ana~KDeEI~sLr~~l~~ 561 (891)
-++..-++.|-|++|+|.--..|--.+ ...|--|+-..+.||.||+.|+..|.+
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 567788999999999996555554433 356888888899999999999988765
No 82
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=23.85 E-value=1.4e+02 Score=25.75 Aligned_cols=40 Identities=13% Similarity=0.258 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 043674 332 IDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLE 371 (891)
Q Consensus 332 iDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLE 371 (891)
....++=|-.|...+.....++++|+.++..|..+|..|+
T Consensus 42 L~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555666666666666667788888888888888888775
No 83
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=23.31 E-value=1.6e+02 Score=24.51 Aligned_cols=35 Identities=26% Similarity=0.233 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 043674 332 IDELVDKVVNLESAVSSQTALVKTLRSETDQLEGH 366 (891)
Q Consensus 332 iDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~k 366 (891)
+++|..+|-.|+..-..-...|..|+.++..|..-
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555544443
No 84
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=22.78 E-value=1.8e+02 Score=28.11 Aligned_cols=36 Identities=17% Similarity=0.362 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 043674 331 KIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGH 366 (891)
Q Consensus 331 kiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~k 366 (891)
+|+.|-+-=-+||..|..|.-+|+-|+..+.+|..+
T Consensus 73 ~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~gK 108 (133)
T 1j1d_C 73 RVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGK 108 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHcc
Confidence 455555556667777777777777777776666543
No 85
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=22.02 E-value=92 Score=27.01 Aligned_cols=45 Identities=9% Similarity=0.180 Sum_probs=31.5
Q ss_pred chhhHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHh
Q 043674 324 AVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHIS 368 (891)
Q Consensus 324 sV~e~AEkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~ 368 (891)
.|.++.+.|..=-..|..||..+-.+.++|..|+.+++..+.-+.
T Consensus 12 ~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 12 LEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 355555666666678999999999999999999999999887665
No 86
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.64 E-value=66 Score=30.28 Aligned_cols=28 Identities=32% Similarity=0.738 Sum_probs=25.3
Q ss_pred hhhhhHHHHHHHHhhcHHHHHHhHHHHhh
Q 043674 498 REKILLEEYTSVLHNYTDVRRKLSVMEKK 526 (891)
Q Consensus 498 rEKiLL~EYTsvLrNYKdvk~kL~evEkK 526 (891)
++| |..||+.+|.+|..+-|+.++.||-
T Consensus 93 ~~K-L~~dF~~~L~~FQ~~Qr~~aekek~ 120 (130)
T 2dnx_A 93 KER-LMNDFSAALNNFQAVQRRVSEKEKE 120 (130)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566 7899999999999999999999964
No 87
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=20.62 E-value=1.3e+02 Score=27.28 Aligned_cols=42 Identities=21% Similarity=0.261 Sum_probs=33.0
Q ss_pred HHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 336 VDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 336 V~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
|+.+..||..+..-+.++++|+.|+..+...+..+-.....|
T Consensus 47 ~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 47 VQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455678888888888888888888888888877776666555
No 88
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=20.35 E-value=82 Score=25.17 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccc
Q 043674 353 VKTLRSETDQLEGHISRLEGEKESL 377 (891)
Q Consensus 353 i~RLr~E~deL~~kL~tLEe~k~~L 377 (891)
++-|..-+.+|..+|.+|+.+..||
T Consensus 12 ~k~le~~naeLEervstLq~EN~mL 36 (42)
T 2oqq_A 12 VKDLENKNSELEERLSTLQNENQML 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444555555555555665555554
No 89
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=20.16 E-value=1.1e+02 Score=27.01 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 043674 330 EKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHI 367 (891)
Q Consensus 330 EkiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL 367 (891)
+.|.+.-..|-.||..+....++|..|+++.|.++.-+
T Consensus 33 eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl 70 (72)
T 3nmd_A 33 EELRQRDALIDELELELDQKDELIQMLQNELDKYRSVI 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Done!