Query 043674
Match_columns 891
No_of_seqs 135 out of 157
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 12:17:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043674.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043674hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ap3a1 a.24.27.1 (A:12-196) H 80.0 12 0.00086 31.2 12.2 26 175-200 10-35 (185)
2 d1qvra2 c.37.1.20 (A:149-535) 52.2 19 0.0014 37.2 8.8 50 152-201 253-303 (387)
3 d2efka1 a.238.1.4 (A:10-288) C 24.8 2.3E+02 0.017 25.4 21.4 31 152-183 11-41 (279)
4 d3d19a2 a.29.13.1 (A:145-274) 23.3 78 0.0057 27.8 6.8 39 664-703 5-59 (130)
5 d1seta1 a.2.7.1 (A:1-110) Sery 23.0 37 0.0027 28.6 4.3 71 680-757 33-103 (110)
6 d2ap3a1 a.24.27.1 (A:12-196) H 17.1 2.4E+02 0.018 22.5 8.8 38 152-193 5-42 (185)
7 d1vf6a_ a.194.1.1 (A:) Associa 15.1 58 0.0042 25.6 3.3 24 678-701 33-56 (58)
8 d2efla1 a.238.1.4 (A:1-288) Fo 14.6 3.9E+02 0.029 23.8 22.8 31 152-183 20-50 (288)
9 d1nkpa_ a.38.1.1 (A:) Myc prot 14.5 1.5E+02 0.011 23.7 6.1 41 331-371 46-86 (88)
10 d2ik8b1 a.91.1.1 (B:65-180) Re 14.3 27 0.002 28.9 1.3 15 668-689 25-39 (116)
No 1
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=79.95 E-value=12 Score=31.23 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchh
Q 043674 175 YERGYEKYWEIEDQITEMQAKVCNLQ 200 (891)
Q Consensus 175 YqqsleK~~~LE~qIs~~Qe~v~~Lq 200 (891)
|+..+.++.+.+..+...+..+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~k~~~~e 35 (185)
T d2ap3a1 10 YLKQVDKIKDDEEPIKTVGKKIAELD 35 (185)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555544444443
No 2
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=52.20 E-value=19 Score=37.17 Aligned_cols=50 Identities=30% Similarity=0.434 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhchhh
Q 043674 152 EEIDKLQKGILGLQTEKEFAKSS-YERGYEKYWEIEDQITEMQAKVCNLQD 201 (891)
Q Consensus 152 ~EI~~LQk~il~LQtEKEa~~lq-YqqsleK~~~LE~qIs~~Qe~v~~LqD 201 (891)
.+++.|+..|..++.|++++.-. -..+.+|+.+++.+++..+++...|..
T Consensus 253 ~el~~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~ 303 (387)
T d1qvra2 253 EEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRA 303 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 47778888888888887776442 234678899999999999988888853
No 3
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.80 E-value=2.3e+02 Score=25.40 Aligned_cols=31 Identities=13% Similarity=0.182 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 043674 152 EEIDKLQKGILGLQTEKEFAKSSYERGYEKYW 183 (891)
Q Consensus 152 ~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~ 183 (891)
..|..| +.|...=.|+-.+--.|-++|.|+.
T Consensus 11 ~g~~~~-~~~~~~~~eRa~iE~~Yak~L~kL~ 41 (279)
T d2efka1 11 WGLDLL-DRYVKFVKERTEVEQAYAKQLRSLV 41 (279)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 6666667778888888888888886
No 4
>d3d19a2 a.29.13.1 (A:145-274) Uncharacterized protein BCE_G9241_1042 {Bacillus cereus [TaxId: 1396]}
Probab=23.31 E-value=78 Score=27.76 Aligned_cols=39 Identities=23% Similarity=0.509 Sum_probs=30.4
Q ss_pred HHHHHHhHHHHHHh----------------hhhhHHHHHhhhhHHHHHHHHHHHHH
Q 043674 664 DELLEENLEFWLRF----------------STSVHQIQKYQSTVQDLKAELARLKD 703 (891)
Q Consensus 664 D~lLEENLeFWlRF----------------StS~hqIQkFqt~~~dLq~El~kl~~ 703 (891)
|++|||++ ||+|- .-=..+-..|...+++|-.+-..+.+
T Consensus 5 ~~~lee~l-FWlrim~eHa~FI~~~L~p~E~~li~~A~~f~~~Fe~Ll~~a~~l~~ 59 (130)
T d3d19a2 5 DAIIKENV-FFLRIMADHAKFIGHLLDPSERKLVDTARNFSNDFDELMYQAIDLES 59 (130)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78999997 99984 12356788899999999877777655
No 5
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=22.96 E-value=37 Score=28.57 Aligned_cols=71 Identities=8% Similarity=0.089 Sum_probs=41.5
Q ss_pred hhHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccccccccccchHHHHHHhhhhhhhHhhhhcccchHHHhhhhhhccc
Q 043674 680 SVHQIQKYQSTVQDLKAELARLKDKKKQEGSAKQRYTKSDARPIYKHLREIQTELTLWLENNEVLKDEVQDRYTSLCN 757 (891)
Q Consensus 680 S~hqIQkFqt~~~dLq~El~kl~~~~~~eg~~~~~~~kse~~pi~khLREi~tEL~vWlE~nalLk~ELq~RfsSLC~ 757 (891)
-+.+.+..++.++.|+++...+... =|.. .+.+...+-...++|+.++..+=++=.-+..+|+.-..+|=|
T Consensus 33 ld~~rr~l~~~~e~l~~~rN~~sk~---i~k~----~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~iPN 103 (110)
T d1seta1 33 LDREVQELKKRLQEVQTERNQVAKR---VPKA----PPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPL 103 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---GGGC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHh----hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3456666667777777666544322 1111 122344566778888888887776666666666655555443
No 6
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=17.11 E-value=2.4e+02 Score=22.54 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043674 152 EEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQ 193 (891)
Q Consensus 152 ~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Q 193 (891)
.+|..++..+-.+.-.. -.+.....++.+++..+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~----~~~~~~~~k~~~~e~~~~~~~ 42 (185)
T d2ap3a1 5 KEIKAYLKQVDKIKDDE----EPIKTVGKKIAELDEKKKKLT 42 (185)
T ss_dssp HHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 45666666665554322 223344456666666665443
No 7
>d1vf6a_ a.194.1.1 (A:) Associated tight junction protein Pals-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.08 E-value=58 Score=25.59 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.5
Q ss_pred hhhhHHHHHhhhhHHHHHHHHHHH
Q 043674 678 STSVHQIQKYQSTVQDLKAELARL 701 (891)
Q Consensus 678 StS~hqIQkFqt~~~dLq~El~kl 701 (891)
|-=|+||=.+|+||+.|+.++.-|
T Consensus 33 SPLF~qiL~lQ~SiqqLk~Qvn~~ 56 (58)
T d1vf6a_ 33 SPLFNQILTLQQSIKQLKGQLNHI 56 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777999999999999999988654
No 8
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.58 E-value=3.9e+02 Score=23.82 Aligned_cols=31 Identities=19% Similarity=0.189 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 043674 152 EEIDKLQKGILGLQTEKEFAKSSYERGYEKYW 183 (891)
Q Consensus 152 ~EI~~LQk~il~LQtEKEa~~lqYqqsleK~~ 183 (891)
..+..+ +.+..+=.++-.+--.|-+.|.|+.
T Consensus 20 ~~~~~~-~~~~~~~~eRa~iE~eYak~L~kl~ 50 (288)
T d2efla1 20 WGIDIL-EKYIKFVKERTEIELSYAKQLRNLS 50 (288)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 4555555566666666777777775
No 9
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.52 E-value=1.5e+02 Score=23.70 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 043674 331 KIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLE 371 (891)
Q Consensus 331 kiDeLV~KVisLE~~vSsQta~i~RLr~E~deL~~kL~tLE 371 (891)
-+...++-|-.|+..+......+..|+.+.+.|...|..|.
T Consensus 46 iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~ 86 (88)
T d1nkpa_ 46 ILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35666666667776666667777778888888877776653
No 10
>d2ik8b1 a.91.1.1 (B:65-180) Regulator of G-protein signaling 16, RGS16 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.33 E-value=27 Score=28.86 Aligned_cols=15 Identities=53% Similarity=1.148 Sum_probs=11.1
Q ss_pred HHhHHHHHHhhhhhHHHHHhhh
Q 043674 668 EENLEFWLRFSTSVHQIQKYQS 689 (891)
Q Consensus 668 EENLeFWlRFStS~hqIQkFqt 689 (891)
+|||+||+- |++|..
T Consensus 25 ~e~L~Fw~~-------ve~~~~ 39 (116)
T d2ik8b1 25 EENLEFWLA-------CEEFKK 39 (116)
T ss_dssp HHHHHHHHH-------HHHHTT
T ss_pred HHHHHHHHH-------HHHHhc
Confidence 689999984 566644
Done!