BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043676
(446 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/440 (73%), Positives = 372/440 (84%), Gaps = 4/440 (0%)
Query: 1 LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
L S PA++ GV+SDDN+LQLEATT RKLLS +R+PPIE+VIQSGVVPRFV+FL RED+P
Sbjct: 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFP 132
Query: 61 QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
QLQ+EAAW L NIASGTSENT VVIDHGAVPIFVKLL S SDDVREQAVWALGNVAGDSP
Sbjct: 133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP 192
Query: 121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL 180
+CRDLVL+ GAL+PLLA+LNEH KLSMLRNAT TLSNFCRGKP+P F+Q RPALPALA+L
Sbjct: 193 KCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARL 252
Query: 181 VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240
+HSNDE+VLT ACW+LSYL+DGTNDKIQAVIEAGVCPRLVELL HPSPSVL PALRTVGN
Sbjct: 253 IHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGN 312
Query: 241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGL 300
IVTGDD QTQCII+H A+P LL +L N TAGN++QIQAVI+AG+
Sbjct: 313 IVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGI 372
Query: 301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT 360
I P+VNLLQ AEFD KKEAAWAISNATSGG+ +QIK+LV EGC+KPLCDLL+C D IVT
Sbjct: 373 IGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVT 432
Query: 361 VCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI 420
VCL GLENILKVGE ++ + GDVN ++Q ++EA GLEKIENLQSHDNNEI+EK+VKI
Sbjct: 433 VCLEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKI 490
Query: 421 FKTYWCGRNEEEDALGSNVI 440
+ YW +EE+D +G+ +
Sbjct: 491 LEAYWM--DEEDDTMGATTV 508
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/438 (73%), Positives = 371/438 (84%), Gaps = 4/438 (0%)
Query: 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQL 62
S PA++ GV+SDDN+LQLEATT RKLLS +R+PPIE+VIQSGVVPRFV+FL RED+PQL
Sbjct: 37 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQL 96
Query: 63 QYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC 122
Q+EAAW L NIASGTSENT VVIDHGAVPIFVKLL S SDDVREQAVWALGNVAGDSP+C
Sbjct: 97 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC 156
Query: 123 RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH 182
RDLVL+ GAL+PLLA+LNEH KLSMLRNAT TLSNFCRGKP+P F+Q RPALPALA+L+H
Sbjct: 157 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH 216
Query: 183 SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV 242
SNDE+VLT ACW+LSYL+DGTNDKIQAVIEAGVCPRLVELL HPSPSVL PALRTVGNIV
Sbjct: 217 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 276
Query: 243 TGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLIR 302
TGDD QTQCII+H A+P LL +L N TAGN++QIQAVI+AG+I
Sbjct: 277 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIG 336
Query: 303 PIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVC 362
P+VNLLQ AEFD KKEAAWAISNATSGG+ +QIK+LV EGC+KPLCDLL+C D IVTVC
Sbjct: 337 PLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVC 396
Query: 363 LIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFK 422
L GLENILKVGE ++ + GDVN ++Q ++EA GLEKIENLQSHDNNEI+EK+VKI +
Sbjct: 397 LEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILE 454
Query: 423 TYWCGRNEEEDALGSNVI 440
YW +EE+D +G+ +
Sbjct: 455 AYW--MDEEDDTMGATTV 470
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 420 bits (1080), Expect = e-118, Method: Compositional matrix adjust.
Identities = 231/427 (54%), Positives = 291/427 (68%), Gaps = 5/427 (1%)
Query: 7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQS-GVVPRFVEFLMREDYPQLQYE 65
++ ++S QL AT RKLLS + NPPI++VI + GVV RFVEFL R++ LQ+E
Sbjct: 22 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 66 AAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDL 125
+AWVL NIASG S T +VI GAVPIF++LLSS +DV+EQAVWALGN+AGDS CRD
Sbjct: 82 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 126 VLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPP-FDQVRPALPALAQLVHSN 184
VL L PLL ++ +L+M RNA LSN CRGK PP F +V P L L+ L+ +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 185 DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG 244
D DVL ACW+LSYL+DG NDKIQAVI+AGVC RLVELL H V++PALR VGNIVTG
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261
Query: 245 DDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLIRPI 304
DD QTQ I+N A+ L L+ + TAGNR QIQ VIDA + +
Sbjct: 262 DDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 320
Query: 305 VNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLI 364
+++LQ AEF T+KEAAWAI+NATSGG+ EQIK+LV GC+KPLCDLL D +IV V L
Sbjct: 321 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 380
Query: 365 GLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTY 424
GLENIL++GE E T +N Y +EEA GL+KIE LQSH+N EI++K+ + + Y
Sbjct: 381 GLENILRLGEQEAKRNGT--GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 438
Query: 425 WCGRNEE 431
+ +E+
Sbjct: 439 FGTEDED 445
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 420 bits (1079), Expect = e-117, Method: Compositional matrix adjust.
Identities = 231/427 (54%), Positives = 291/427 (68%), Gaps = 5/427 (1%)
Query: 7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQS-GVVPRFVEFLMREDYPQLQYE 65
++ ++S QL AT RKLLS + NPPI++VI + GVV RFVEFL R++ LQ+E
Sbjct: 25 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 66 AAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDL 125
+AWVL NIASG S T +VI GAVPIF++LLSS +DV+EQAVWALGN+AGDS CRD
Sbjct: 85 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 126 VLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPP-FDQVRPALPALAQLVHSN 184
VL L PLL ++ +L+M RNA LSN CRGK PP F +V P L L+ L+ +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 185 DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG 244
D DVL ACW+LSYL+DG NDKIQAVI+AGVC RLVELL H V++PALR VGNIVTG
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 245 DDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLIRPI 304
DD QTQ I+N A+ L L+ + TAGNR QIQ VIDA + +
Sbjct: 265 DDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323
Query: 305 VNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLI 364
+++LQ AEF T+KEAAWAI+NATSGG+ EQIK+LV GC+KPLCDLL D +IV V L
Sbjct: 324 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383
Query: 365 GLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTY 424
GLENIL++GE E T +N Y +EEA GL+KIE LQSH+N EI++K+ + + Y
Sbjct: 384 GLENILRLGEQEAKRNGT--GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 441
Query: 425 WCGRNEE 431
+ +E+
Sbjct: 442 FGTEDED 448
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 417 bits (1071), Expect = e-117, Method: Compositional matrix adjust.
Identities = 231/436 (52%), Positives = 300/436 (68%), Gaps = 12/436 (2%)
Query: 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ-L 62
P + + SDD QL AT R++LS + PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 147
Query: 63 QYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC 122
Q EAAW L NIASGTS T VV+D AVP+F++LL + S +V+EQA+WALGNVAGDS
Sbjct: 148 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207
Query: 123 RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG-KPEPPFDQVRPALPALAQLV 181
RD VL A+ P+L N + K S++R AT TLSN CRG KP+P + V ALP LA+L+
Sbjct: 208 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 266
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
+S D + L ACW++SYL+DG + IQAVI+ + RLVELL H S V TPALR VGNI
Sbjct: 267 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
VTG+D QTQ +IN G +P L +L+ + TAGN EQIQAVIDA LI
Sbjct: 327 VTGNDLQTQVVINAGVLP-ALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 385
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQ--EQIKHLVREGCVKPLCDLLLCSDPEIV 359
P+V LL+ AE+ TKKEA WAISNA+SGG Q + I++LV +GC+KPLCDLL +D I+
Sbjct: 386 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 445
Query: 360 TVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVK 419
V L LENILK+GEA++ ++N+ A F+E+AGG+EKI N Q ++N++I+EK+ K
Sbjct: 446 EVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 503
Query: 420 IFKTYWCGRNEEEDAL 435
I +TY+ EEEDA+
Sbjct: 504 IIETYF---GEEEDAV 516
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 413 bits (1062), Expect = e-116, Method: Compositional matrix adjust.
Identities = 231/436 (52%), Positives = 299/436 (68%), Gaps = 12/436 (2%)
Query: 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ-L 62
P + + SDD QL AT R++LS + PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 63 QYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC 122
Q EAAW L NIASGTS T VV+D AVP+F++LL + S +V+EQA+WALGNVAGDS
Sbjct: 61 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 123 RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG-KPEPPFDQVRPALPALAQLV 181
RD VL A+ P+L N + K S++R AT TLSN CRG KP+P + V ALP LA+L+
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
+S D + L ACW++SYL+DG + IQAVI+ + RLVELL H S V TPALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
VTG+D QTQ +IN G +P L +L+ + TAGN EQIQAVIDA LI
Sbjct: 240 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQ--EQIKHLVREGCVKPLCDLLLCSDPEIV 359
P+V LL+ AE TKKEA WAISNA+SGG Q + I++LV +GC+KPLCDLL +D I+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 360 TVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVK 419
V L LENILK+GEA++ ++N+ A F+E+AGG+EKI N Q ++N++I+EK+ K
Sbjct: 359 EVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 416
Query: 420 IFKTYWCGRNEEEDAL 435
I +TY+ EEEDA+
Sbjct: 417 IIETYF---GEEEDAV 429
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 413 bits (1062), Expect = e-116, Method: Compositional matrix adjust.
Identities = 231/436 (52%), Positives = 299/436 (68%), Gaps = 12/436 (2%)
Query: 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ-L 62
P + + SDD QL AT R++LS + PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 63 QYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC 122
Q EAAW L NIASGTS T VV+D AVP+F++LL + S +V+EQA+WALGNVAGDS
Sbjct: 61 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 123 RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG-KPEPPFDQVRPALPALAQLV 181
RD VL A+ P+L N + K S++R AT TLSN CRG KP+P + V ALP LA+L+
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
+S D + L ACW++SYL+DG + IQAVI+ + RLVELL H S V TPALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
VTG+D QTQ +IN G +P L +L+ + TAGN EQIQAVIDA LI
Sbjct: 240 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQ--EQIKHLVREGCVKPLCDLLLCSDPEIV 359
P+V LL+ AE TKKEA WAISNA+SGG Q + I++LV +GC+KPLCDLL +D I+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 360 TVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVK 419
V L LENILK+GEA++ ++N+ A F+E+AGG+EKI N Q ++N++I+EK+ K
Sbjct: 359 EVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 416
Query: 420 IFKTYWCGRNEEEDAL 435
I +TY+ EEEDA+
Sbjct: 417 IIETYF---GEEEDAV 429
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 412 bits (1059), Expect = e-115, Method: Compositional matrix adjust.
Identities = 226/426 (53%), Positives = 294/426 (69%), Gaps = 9/426 (2%)
Query: 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ-L 62
P + + SDD QL AT R++LS + PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 63 QYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC 122
Q EAAW L NIASGTS T VV+D AVP+F++LL + S +V+EQA+WALGNVAGDS
Sbjct: 60 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 123 RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG-KPEPPFDQVRPALPALAQLV 181
RD VL A+ P+L N + K S++R AT TLSN CRG KP+P + V ALP LA+L+
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
+S D + L ACW++SYL+DG + IQAVI+ + RLVELL H S V TPALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
VTG+D QTQ +IN G +P L +L+ + TAGN EQIQAVIDA LI
Sbjct: 239 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQ--EQIKHLVREGCVKPLCDLLLCSDPEIV 359
P+V LL+ AE+ TKKEA WAISNA+SGG Q + I++LV +GC+KPLCDLL +D I+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 360 TVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVK 419
V L LENILK+GEA++ ++N+ A F+E+AGG+EKI N Q ++N++I+EK+ K
Sbjct: 358 EVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 415
Query: 420 IFKTYW 425
I +TY+
Sbjct: 416 IIETYF 421
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 412 bits (1058), Expect = e-115, Method: Compositional matrix adjust.
Identities = 225/426 (52%), Positives = 294/426 (69%), Gaps = 9/426 (2%)
Query: 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ-L 62
P + + SDD QL AT R++LS + PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 63 QYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC 122
Q EAAW L NIASGTS T VV+D AVP+F++LL + S +V+EQA+WALGNVAGDS
Sbjct: 60 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 123 RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG-KPEPPFDQVRPALPALAQLV 181
RD VL A+ P+L N + K S++R AT TLSN CRG KP+P + V ALP LA+L+
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
+S D + L ACW++SYL+DG + IQAVI+ + RLVELL H S V TPALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
VTG+D QTQ +IN G +P L +L+ + TAGN EQIQAVIDA LI
Sbjct: 239 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQ--EQIKHLVREGCVKPLCDLLLCSDPEIV 359
P+V LL+ AE+ TKKEA WAISNA+SGG Q + I++LV +GC+KPLCDLL +D I+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 360 TVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVK 419
V L LENI+K+GEA++ ++N+ A F+E+AGG+EKI N Q ++N++I+EK+ K
Sbjct: 358 EVTLDALENIIKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 415
Query: 420 IFKTYW 425
I +TY+
Sbjct: 416 IIETYF 421
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 409 bits (1052), Expect = e-114, Method: Compositional matrix adjust.
Identities = 226/426 (53%), Positives = 293/426 (68%), Gaps = 9/426 (2%)
Query: 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ-L 62
P + + SDD QL AT R++LS + PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 61
Query: 63 QYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC 122
Q EAAW L NIASGTS T VV+D AVP+F++LL + S +V+EQA+WALGNVAGDS
Sbjct: 62 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 123 RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG-KPEPPFDQVRPALPALAQLV 181
RD VL A+ P+L N + K S++R AT TLSN CRG KP+P + V ALP LA+L+
Sbjct: 122 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 180
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
+S D + L ACW++SYL+DG + IQAVI+ + RLVELL H S V TPALR VGNI
Sbjct: 181 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 240
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
VTG+D QTQ +IN G +P L +L+ + TAGN EQIQAVIDA LI
Sbjct: 241 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 299
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQ--EQIKHLVREGCVKPLCDLLLCSDPEIV 359
P+V LL+ AE TKKEA WAISNA+SGG Q + I++LV +GC+KPLCDLL +D I+
Sbjct: 300 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 359
Query: 360 TVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVK 419
V L LENILK+GEA++ ++N+ A F+E+AGG+EKI N Q ++N++I+EK+ K
Sbjct: 360 EVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417
Query: 420 IFKTYW 425
I +TY+
Sbjct: 418 IIETYF 423
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 409 bits (1052), Expect = e-114, Method: Compositional matrix adjust.
Identities = 226/426 (53%), Positives = 293/426 (68%), Gaps = 9/426 (2%)
Query: 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ-L 62
P + + SDD QL AT R++LS + PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 61
Query: 63 QYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC 122
Q EAAW L NIASGTS T VV+D AVP+F++LL + S +V+EQA+WALGNVAGDS
Sbjct: 62 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 123 RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG-KPEPPFDQVRPALPALAQLV 181
RD VL A+ P+L N + K S++R AT TLSN CRG KP+P + V ALP LA+L+
Sbjct: 122 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 180
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
+S D + L ACW++SYL+DG + IQAVI+ + RLVELL H S V TPALR VGNI
Sbjct: 181 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 240
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
VTG+D QTQ +IN G +P L +L+ + TAGN EQIQAVIDA LI
Sbjct: 241 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 299
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQ--EQIKHLVREGCVKPLCDLLLCSDPEIV 359
P+V LL+ AE TKKEA WAISNA+SGG Q + I++LV +GC+KPLCDLL +D I+
Sbjct: 300 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 359
Query: 360 TVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVK 419
V L LENILK+GEA++ ++N+ A F+E+AGG+EKI N Q ++N++I+EK+ K
Sbjct: 360 EVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417
Query: 420 IFKTYW 425
I +TY+
Sbjct: 418 IIETYF 423
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 372 bits (955), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/445 (43%), Positives = 278/445 (62%), Gaps = 13/445 (2%)
Query: 7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
+V G+ S++ QL+AT +RKLLS ++ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 48 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 107
Query: 67 AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
AW L NIASGTSE T V+D GA+P F+ LL+SP + EQAVWALGN+AGD RDLV
Sbjct: 108 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 167
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
+ GA+ PLLA L LRN T TLSN CR K P PP D V LP L +L+
Sbjct: 168 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 227
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
H ND +VL +CW++SYL DG N++I+ V++ GV P+LV+LLG ++TPALR +GNI
Sbjct: 228 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 287
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
VTG D QTQ +I+ GA+ +L N TAG ++QIQ V++ GL+
Sbjct: 288 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 346
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
+V +L A+F T+KEAAWAI+N TSGGT EQI +LV G ++PL +LL D +I+ V
Sbjct: 347 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 406
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
L + NI + E +G+ + + +EE GGL+KIE LQ H+N +++ S+ +
Sbjct: 407 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 459
Query: 422 KTYWCGRNEEEDALGSNVITNGKVY 446
+ Y+ EE+ + + G +
Sbjct: 460 EKYFSVEEEEDQNVVPETTSEGFAF 484
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/445 (43%), Positives = 278/445 (62%), Gaps = 13/445 (2%)
Query: 7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
+V G+ S++ QL+AT +RKLLS ++ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 67 AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
AW L NIASGTSE T V+D GA+P F+ LL+SP + EQAVWALGN+AGD RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
+ GA+ PLLA L LRN T TLSN CR K P PP D V LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
H ND +VL +CW++SYL DG N++I+ V++ GV P+LV+LLG ++TPALR +GNI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
VTG D QTQ +I+ GA+ +L N TAG ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
+V +L A+F T+KEAAWAI+N TSGGT EQI +LV G ++PL +LL D +I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
L + NI + E +G+ + + +EE GGL+KIE LQ H+N +++ S+ +
Sbjct: 421 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 422 KTYWCGRNEEEDALGSNVITNGKVY 446
+ Y+ EE+ + + G +
Sbjct: 474 EKYFSVEEEEDQNVVPETTSEGFAF 498
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/445 (43%), Positives = 278/445 (62%), Gaps = 13/445 (2%)
Query: 7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
+V G+ S++ QL+AT +RKLLS ++ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 67 AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
AW L NIASGTSE T V+D GA+P F+ LL+SP + EQAVWALGN+AGD RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
+ GA+ PLLA L LRN T TLSN CR K P PP D V LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
H ND +VL +CW++SYL DG N++I+ V++ GV P+LV+LLG ++TPALR +GNI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
VTG D QTQ +I+ GA+ +L N TAG ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
+V +L A+F T+KEAAWAI+N TSGGT EQI +LV G ++PL +LL D +I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
L + NI + E +G+ + + +EE GGL+KIE LQ H+N +++ S+ +
Sbjct: 421 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 422 KTYWCGRNEEEDALGSNVITNGKVY 446
+ Y+ EE+ + + G +
Sbjct: 474 EKYFSVEEEEDQNVVPETTSEGFAF 498
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/445 (43%), Positives = 278/445 (62%), Gaps = 13/445 (2%)
Query: 7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
+V G+ S++ QL+AT +RKLLS ++ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 67 AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
AW L NIASGTSE T V+D GA+P F+ LL+SP + EQAVWALGN+AGD RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
+ GA+ PLLA L LRN T TLSN CR K P PP D V LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
H ND +VL +CW++SYL DG N++I+ V++ GV P+LV+LLG ++TPALR +GNI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
VTG D QTQ +I+ GA+ +L N TAG ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
+V +L A+F T+KEAAWAI+N TSGGT EQI +LV G ++PL +LL D +I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
L + NI + E +G+ + + +EE GGL+KIE LQ H+N +++ S+ +
Sbjct: 421 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 422 KTYWCGRNEEEDALGSNVITNGKVY 446
+ Y+ EE+ + + G +
Sbjct: 474 EKYFSVEEEEDQNVVPETTSEGFAF 498
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/445 (43%), Positives = 278/445 (62%), Gaps = 13/445 (2%)
Query: 7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
+V G+ S++ QL+AT +RKLLS ++ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 67 AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
AW L NIASGTSE T V+D GA+P F+ LL+SP + EQAVWALGN+AGD RDLV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
+ GA+ PLLA L LRN T TLSN CR K P PP D V LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
H ND +VL +CW++SYL DG N++I+ V++ GV P+LV+LLG ++TPALR +GNI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
VTG D QTQ +I+ GA+ +L N TAG ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
+V +L A+F T+KEAAWAI+N TSGGT EQI +LV G ++PL +LL D +I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
L + NI + E +G+ + + +EE GGL+KIE LQ H+N +++ S+ +
Sbjct: 371 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 422 KTYWCGRNEEEDALGSNVITNGKVY 446
+ Y+ EE+ + + G +
Sbjct: 424 EKYFSVEEEEDQNVVPETTSEGFAF 448
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/445 (43%), Positives = 278/445 (62%), Gaps = 13/445 (2%)
Query: 7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
+V G+ S++ QL+AT +RKLLS ++ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 18 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 67 AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
AW L NIASGTSE T V+D GA+P F+ LL+SP + EQAVWALGN+AGD RDLV
Sbjct: 78 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
+ GA+ PLLA L LRN T TLSN CR K P PP D V LP L +L+
Sbjct: 138 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 197
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
H ND +VL +CW++SYL DG N++I+ V++ GV P+LV+LLG ++TPALR +GNI
Sbjct: 198 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 257
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
VTG D QTQ +I+ GA+ +L N TAG ++QIQ V++ GL+
Sbjct: 258 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 316
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
+V +L A+F T+KEAAWAI+N TSGGT EQI +LV G ++PL +LL D +I+ V
Sbjct: 317 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 376
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
L + NI + E +G+ + + +EE GGL+KIE LQ H+N +++ S+ +
Sbjct: 377 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 429
Query: 422 KTYWCGRNEEEDALGSNVITNGKVY 446
+ Y+ EE+ + + G +
Sbjct: 430 EKYFSVEEEEDQNVVPETTSEGFAF 454
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/424 (45%), Positives = 271/424 (63%), Gaps = 13/424 (3%)
Query: 7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
+V G+ S++ QL+AT +RKLLS ++ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 46 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 105
Query: 67 AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
AW L NIASGTSE T V+D GA+P F+ LL+SP + EQAVWALGN+AGD RDLV
Sbjct: 106 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 165
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
+ GA+ PLLA L LRN T TLSN CR K P PP D V LP L +L+
Sbjct: 166 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 225
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
H ND +VL +CW++SYL DG N++I+ V++ GV P+LV+LLG ++TPALR +GNI
Sbjct: 226 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 285
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
VTG D QTQ +I+ GA+ +L N TAG ++QIQ V++ GL+
Sbjct: 286 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 344
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
+V +L A+F T+KEAAWAI+N TSGGT EQI +LV G ++PL +LL D +I+ V
Sbjct: 345 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 404
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
L + NI + E +G+ + + +EE GGL+KIE LQ H+N +++ S+ +
Sbjct: 405 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 457
Query: 422 KTYW 425
+ Y+
Sbjct: 458 EKYF 461
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 21/288 (7%)
Query: 151 ATRTLSNFCRGKPEPPFDQVRPA--LPALAQLVHSNDEDVLTY-ACWSLSYLADGTNDKI 207
AT+ + +PP D + A +P + D + + + W+L+ +A GT+++
Sbjct: 61 ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 120
Query: 208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDML-V 266
+AV++ G P + LL P + A+ +GNI +I HGA+ LL +L V
Sbjct: 121 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAV 180
Query: 267 HNHXXXXXXXXXXXXXXXTAGNREQIQAV-IDA--GLIRPIVNLLQNAEFDTKKEAAWAI 323
+ + R + A +DA ++ +V LL + + + ++ WAI
Sbjct: 181 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 240
Query: 324 SNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTI 383
S T G E+I+ +V++G V L LL ++ IVT L R +G +
Sbjct: 241 SYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPAL-------------RAIGNIV 286
Query: 384 GDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEE 431
++ Q V +AG L +L ++ I +++ GR ++
Sbjct: 287 TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ 334
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/424 (45%), Positives = 271/424 (63%), Gaps = 13/424 (3%)
Query: 7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
+V G+ S++ QL+AT +RKLLS ++ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 67 AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
AW L NIASGTSE T V+D GA+P F+ LL+SP + EQAVWALGN+AGD RDLV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
+ GA+ PLLA L LRN T TLSN CR K P PP D V LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
H ND +VL +CW++SYL DG N++I+ V++ GV P+LV+LLG ++TPALR +GNI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
VTG D QTQ +I+ GA+ +L N TAG ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
+V +L A+F T+KEAAWAI+N TSGGT EQI +LV G ++PL +LL D +I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
L + NI + E +G+ + + +EE GGL+KIE LQ H+N +++ S+ +
Sbjct: 371 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 422 KTYW 425
+ Y+
Sbjct: 424 EKYF 427
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 21/288 (7%)
Query: 151 ATRTLSNFCRGKPEPPFDQVRPA--LPALAQLVHSNDEDVLTY-ACWSLSYLADGTNDKI 207
AT+ + +PP D + A +P + D + + + W+L+ +A GT+++
Sbjct: 27 ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 86
Query: 208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDML-V 266
+AV++ G P + LL P + A+ +GNI +I HGA+ LL +L V
Sbjct: 87 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAV 146
Query: 267 HNHXXXXXXXXXXXXXXXTAGNREQIQAV-IDA--GLIRPIVNLLQNAEFDTKKEAAWAI 323
+ + R + A +DA ++ +V LL + + + ++ WAI
Sbjct: 147 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 206
Query: 324 SNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTI 383
S T G E+I+ +V++G V L LL ++ IVT L R +G +
Sbjct: 207 SYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPAL-------------RAIGNIV 252
Query: 384 GDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEE 431
++ Q V +AG L +L ++ I +++ GR ++
Sbjct: 253 TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ 300
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/424 (45%), Positives = 271/424 (63%), Gaps = 13/424 (3%)
Query: 7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
+V G+ S++ QL+AT +RKLLS ++ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 11 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 67 AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
AW L NIASGTSE T V+D GA+P F+ LL+SP + EQAVWALGN+AGD RDLV
Sbjct: 71 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
+ GA+ PLLA L LRN T TLSN CR K P PP D V LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
H ND +VL +CW++SYL DG N++I+ V++ GV P+LV+LLG ++TPALR +GNI
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
VTG D QTQ +I+ GA+ +L N TAG ++QIQ V++ GL+
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
+V +L A+F T+KEAAWAI+N TSGGT EQI +LV G ++PL +LL D +I+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
L + NI + E +G+ + + +EE GGL+KIE LQ H+N +++ S+ +
Sbjct: 370 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 422
Query: 422 KTYW 425
+ Y+
Sbjct: 423 EKYF 426
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 21/288 (7%)
Query: 151 ATRTLSNFCRGKPEPPFDQVRPA--LPALAQLVHSNDEDVLTY-ACWSLSYLADGTNDKI 207
AT+ + +PP D + A +P + D + + + W+L+ +A GT+++
Sbjct: 26 ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 85
Query: 208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDML-V 266
+AV++ G P + LL P + A+ +GNI +I HGA+ LL +L V
Sbjct: 86 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAV 145
Query: 267 HNHXXXXXXXXXXXXXXXTAGNREQIQAV-IDA--GLIRPIVNLLQNAEFDTKKEAAWAI 323
+ + R + A +DA ++ +V LL + + + ++ WAI
Sbjct: 146 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 205
Query: 324 SNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTI 383
S T G E+I+ +V++G V L LL ++ IVT L R +G +
Sbjct: 206 SYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPAL-------------RAIGNIV 251
Query: 384 GDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEE 431
++ Q V +AG L +L ++ I +++ GR ++
Sbjct: 252 TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ 299
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/424 (45%), Positives = 271/424 (63%), Gaps = 13/424 (3%)
Query: 7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
+V G+ S++ QL+AT +RKLLS ++ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 11 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 67 AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
AW L NIASGTSE T V+D GA+P F+ LL+SP + EQAVWALGN+AGD RDLV
Sbjct: 71 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
+ GA+ PLLA L LRN T TLSN CR K P PP D V LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
H ND +VL +CW++SYL DG N++I+ V++ GV P+LV+LLG ++TPALR +GNI
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
VTG D QTQ +I+ GA+ +L N TAG ++QIQ V++ GL+
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
+V +L A+F T+KEAAWAI+N TSGGT EQI +LV G ++PL +LL D +I+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
L + NI + E +G+ + + +EE GGL+KIE LQ H+N +++ S+ +
Sbjct: 370 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 422
Query: 422 KTYW 425
+ Y+
Sbjct: 423 EKYF 426
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 21/288 (7%)
Query: 151 ATRTLSNFCRGKPEPPFDQVRPA--LPALAQLVHSNDEDVLTY-ACWSLSYLADGTNDKI 207
AT+ + +PP D + A +P + D + + + W+L+ +A GT+++
Sbjct: 26 ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 85
Query: 208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDML-V 266
+AV++ G P + LL P + A+ +GNI +I HGA+ LL +L V
Sbjct: 86 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAV 145
Query: 267 HNHXXXXXXXXXXXXXXXTAGNREQIQAV-IDA--GLIRPIVNLLQNAEFDTKKEAAWAI 323
+ + R + A +DA ++ +V LL + + + ++ WAI
Sbjct: 146 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 205
Query: 324 SNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTI 383
S T G E+I+ +V++G V L LL ++ IVT L R +G +
Sbjct: 206 SYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPAL-------------RAIGNIV 251
Query: 384 GDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEE 431
++ Q V +AG L +L ++ I +++ GR ++
Sbjct: 252 TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ 299
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/424 (45%), Positives = 271/424 (63%), Gaps = 13/424 (3%)
Query: 7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
+V G+ S++ QL+AT +RKLLS ++ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 7 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 67 AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
AW L NIASGTSE T V+D GA+P F+ LL+SP + EQAVWALGN+AGD RDLV
Sbjct: 67 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
+ GA+ PLLA L LRN T TLSN CR K P PP D V LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
H ND +VL +CW++SYL DG N++I+ V++ GV P+LV+LLG ++TPALR +GNI
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
VTG D QTQ +I+ GA+ +L N TAG ++QIQ V++ GL+
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
+V +L A+F T+KEAAWAI+N TSGGT EQI +LV G ++PL +LL D +I+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
L + NI + E +G+ + + +EE GGL+KIE LQ H+N +++ S+ +
Sbjct: 366 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 418
Query: 422 KTYW 425
+ Y+
Sbjct: 419 EKYF 422
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 21/288 (7%)
Query: 151 ATRTLSNFCRGKPEPPFDQVRPA--LPALAQLVHSNDEDVLTY-ACWSLSYLADGTNDKI 207
AT+ + +PP D + A +P + D + + + W+L+ +A GT+++
Sbjct: 22 ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 81
Query: 208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDML-V 266
+AV++ G P + LL P + A+ +GNI +I HGA+ LL +L V
Sbjct: 82 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAV 141
Query: 267 HNHXXXXXXXXXXXXXXXTAGNREQIQAV-IDA--GLIRPIVNLLQNAEFDTKKEAAWAI 323
+ + R + A +DA ++ +V LL + + + ++ WAI
Sbjct: 142 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 201
Query: 324 SNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTI 383
S T G E+I+ +V++G V L LL ++ IVT L R +G +
Sbjct: 202 SYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPAL-------------RAIGNIV 247
Query: 384 GDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEE 431
++ Q V +AG L +L ++ I +++ GR ++
Sbjct: 248 TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ 295
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/424 (45%), Positives = 271/424 (63%), Gaps = 13/424 (3%)
Query: 7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
+V G+ S++ QL+AT +RKLLS ++ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 67 AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
AW L NIASGTSE T V+D GA+P F+ LL+SP + EQAVWALGN+AGD RDLV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
+ GA+ PLLA L LRN T TLSN CR K P PP D V LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
H ND +VL +CW++SYL DG N++I+ V++ GV P+LV+LLG ++TPALR +GNI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
VTG D QTQ +I+ GA+ +L N TAG ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
+V +L A+F T+KEAAWAI+N TSGGT EQI +LV G ++PL +LL D +I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
L + NI + E +G+ + + +EE GGL+KIE LQ H+N +++ S+ +
Sbjct: 371 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 422 KTYW 425
+ Y+
Sbjct: 424 EKYF 427
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 21/288 (7%)
Query: 151 ATRTLSNFCRGKPEPPFDQVRPA--LPALAQLVHSNDEDVLTY-ACWSLSYLADGTNDKI 207
AT+ + +PP D + A +P + D + + + W+L+ +A GT+++
Sbjct: 27 ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 86
Query: 208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDML-V 266
+AV++ G P + LL P + A+ +GNI +I HGA+ LL +L V
Sbjct: 87 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAV 146
Query: 267 HNHXXXXXXXXXXXXXXXTAGNREQIQAV-IDA--GLIRPIVNLLQNAEFDTKKEAAWAI 323
+ + R + A +DA ++ +V LL + + + ++ WAI
Sbjct: 147 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 206
Query: 324 SNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTI 383
S T G E+I+ +V++G V L LL ++ IVT L R +G +
Sbjct: 207 SYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPAL-------------RAIGNIV 252
Query: 384 GDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEE 431
++ Q V +AG L +L ++ I +++ GR ++
Sbjct: 253 TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ 300
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/424 (45%), Positives = 271/424 (63%), Gaps = 13/424 (3%)
Query: 7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
+V G+ S++ QL+AT +RKLLS ++ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 7 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 67 AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
AW L NIASGTSE T V+D GA+P F+ LL+SP + EQAVWALGN+AGD RDLV
Sbjct: 67 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
+ GA+ PLLA L LRN T TLSN CR K P PP D V LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
H ND +VL +CW++SYL DG N++I+ V++ GV P+LV+LLG ++TPALR +GNI
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
VTG D QTQ +I+ GA+ +L N TAG ++QIQ V++ GL+
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
+V +L A+F T+KEAAWAI+N TSGGT EQI +LV G ++PL +LL D +I+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
L + NI + E +G+ + + +EE GGL+KIE LQ H+N +++ S+ +
Sbjct: 366 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 418
Query: 422 KTYW 425
+ Y+
Sbjct: 419 EKYF 422
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 21/288 (7%)
Query: 151 ATRTLSNFCRGKPEPPFDQVRPA--LPALAQLVHSNDEDVLTY-ACWSLSYLADGTNDKI 207
AT+ + +PP D + A +P + D + + + W+L+ +A GT+++
Sbjct: 22 ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 81
Query: 208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDML-V 266
+AV++ G P + LL P + A+ +GNI +I HGA+ LL +L V
Sbjct: 82 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAV 141
Query: 267 HNHXXXXXXXXXXXXXXXTAGNREQIQAV-IDA--GLIRPIVNLLQNAEFDTKKEAAWAI 323
+ + R + A +DA ++ +V LL + + + ++ WAI
Sbjct: 142 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 201
Query: 324 SNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTI 383
S T G E+I+ +V++G V L LL ++ IVT L R +G +
Sbjct: 202 SYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPAL-------------RAIGNIV 247
Query: 384 GDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEE 431
++ Q V +AG L +L ++ I +++ GR ++
Sbjct: 248 TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ 295
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/445 (43%), Positives = 278/445 (62%), Gaps = 13/445 (2%)
Query: 7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
+V G+ S + QL+AT +RKLLS ++ PPI+ +I++G++P+FV FL R D +Q+E+
Sbjct: 13 IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFES 72
Query: 67 AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
AW L NIASGTSE T V+D GA+P F+ LL+SP + EQAVWALGN+AGD RDLV
Sbjct: 73 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132
Query: 127 LSQGALIPLLAELNEHAKLSM----LRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
+ GA+ PLLA L S+ LRN T TLSN CR K P PP D V LP L +L+
Sbjct: 133 IKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLL 192
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
H +D +VL CW++SYL DG N++I V++ GV P+LV+LLG ++TPALR +GNI
Sbjct: 193 HHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNI 252
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
VTG D QTQ +I+ GA+ +L N TAG ++QIQ V++ GL+
Sbjct: 253 VTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 311
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
+V++L A+F T+KEA WA++N TSGGT EQI +LV G ++PL +LL D +I+ V
Sbjct: 312 PFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILV 371
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
L + NI + E +G+ + + +EE GGL+KIE LQ+H+N +++ S+ +
Sbjct: 372 ILDAISNIFQAAEK-------LGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLI 424
Query: 422 KTYWCGRNEEEDALGSNVITNGKVY 446
+ Y+ EE+ + + G +
Sbjct: 425 EKYFSVEEEEDQNVVPETTSEGYTF 449
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/424 (45%), Positives = 271/424 (63%), Gaps = 13/424 (3%)
Query: 7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
+V G+ S++ QL+AT +RKLLS ++ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 38 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 97
Query: 67 AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
AW L NIASGTSE T V+D GA+P F+ LL+SP + EQAVWALGN+AGD RDLV
Sbjct: 98 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 157
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
+ GA+ PLLA L LRN T TLSN CR K P PP D V LP L +L+
Sbjct: 158 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 217
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
H ND +VL +CW++SYL DG N++I+ V++ GV P+LV+LLG ++TPALR +GNI
Sbjct: 218 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 277
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
VTG D QTQ +I+ GA+ +L N TAG ++QIQ V++ GL+
Sbjct: 278 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 336
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
+V +L A+F T+KEAAWAI+N TSGGT EQI +LV G ++PL +LL D +I+ V
Sbjct: 337 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 396
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
L + NI + E +G+ + + +EE GGL+KIE LQ H+N +++ S+ +
Sbjct: 397 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 449
Query: 422 KTYW 425
+ Y+
Sbjct: 450 EKYF 453
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 21/288 (7%)
Query: 151 ATRTLSNFCRGKPEPPFDQVRPA--LPALAQLVHSNDEDVLTY-ACWSLSYLADGTNDKI 207
AT+ + +PP D + A +P + D + + + W+L+ +A GT+++
Sbjct: 53 ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 112
Query: 208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDML-V 266
+AV++ G P + LL P + A+ +GNI +I HGA+ LL +L V
Sbjct: 113 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAV 172
Query: 267 HNHXXXXXXXXXXXXXXXTAGNREQIQAV-IDA--GLIRPIVNLLQNAEFDTKKEAAWAI 323
+ + R + A +DA ++ +V LL + + + ++ WAI
Sbjct: 173 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 232
Query: 324 SNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTI 383
S T G E+I+ +V++G V L LL ++ IVT L R +G +
Sbjct: 233 SYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPAL-------------RAIGNIV 278
Query: 384 GDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEE 431
++ Q V +AG L +L ++ I +++ GR ++
Sbjct: 279 TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ 326
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/445 (43%), Positives = 276/445 (62%), Gaps = 13/445 (2%)
Query: 7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
+V G+ S++ QL+AT +RKLLS ++ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 140
Query: 67 AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
AW L NIASGTSE T V+D GA+P F+ LL+SP + EQAVWALGN+AG RDLV
Sbjct: 141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLV 200
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
+ GA+ PLLA L LRN T TLSN CR K P PP D V LP L +L+
Sbjct: 201 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 260
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
H ND +VL +CW++SYL DG N++I+ V++ GV P+LV+LLG ++TPALR +GNI
Sbjct: 261 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
VTG D QTQ +I+ GA+ +L N TAG ++QIQ V++ GL+
Sbjct: 321 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 379
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
+V +L A+F T+K AAWAI+N TSGGT EQI +LV G ++PL +LL D +I+ V
Sbjct: 380 PFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 439
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
L + NI + E +G+ + + +EE GGL+KIE LQ H+N +++ S+ +
Sbjct: 440 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 492
Query: 422 KTYWCGRNEEEDALGSNVITNGKVY 446
+ Y+ EE+ + + G +
Sbjct: 493 EKYFSVEEEEDQNVVPETTSEGFAF 517
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 131/251 (52%), Gaps = 15/251 (5%)
Query: 174 LPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTP 233
LP + Q ++S+D A S + N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 234 ALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQ 293
AL + NI +G + Q Q +I+ GA+P L+ +L + + GN EQIQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQ 132
Query: 294 AVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC 353
AVIDAG + +V LL + +EA WA+SN SGG EQI+ ++ G + L LL
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAVIDAGALPALVQLLSS 191
Query: 354 SDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEI 413
+ +I+ L L NI G N+ Q V+EAG LEK+E LQSH+N +I
Sbjct: 192 PNEQILQEALWALSNIASGG-------------NEQKQAVKEAGALEKLEQLQSHENEKI 238
Query: 414 HEKSVKIFKTY 424
+++ + +
Sbjct: 239 QKEAQEALEKL 249
Score = 135 bits (339), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 126/232 (54%), Gaps = 12/232 (5%)
Query: 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQ 63
P + + SDD QL AT ++LS D N I+ VI +G +P V+ L + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 64 YEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCR 123
EA W L NIASG +E VID GA+P V+LLSSP++ + ++A+WAL N+A
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 124 DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRP-----ALPALA 178
V+ GAL P L +L +L+ A LSN G E Q++ ALPAL
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNE----QIQAVIDAGALPALV 186
Query: 179 QLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSV 230
QL+ S +E +L A W+LS +A G N++ QAV EAG +L +L H + +
Sbjct: 187 QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 238
Score = 132 bits (331), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 122/228 (53%), Gaps = 11/228 (4%)
Query: 47 VPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVRE 106
+P+ + L +D Q Q A I S +E VID GA+P V+LLSSP++ + +
Sbjct: 14 LPQMTQQLNSDDM-QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 107 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPP 166
+A+WAL N+A V+ GAL P L +L +L+ A LSN G E
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNE-- 129
Query: 167 FDQVRP-----ALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVE 221
Q++ ALPAL QL+ S +E +L A W+LS +A G N++IQAVI+AG P LV+
Sbjct: 130 --QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 187
Query: 222 LLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNH 269
LL P+ +L AL + NI +G + Q Q + GA+ L + H +
Sbjct: 188 LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 235
Score = 124 bits (312), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 105/179 (58%), Gaps = 4/179 (2%)
Query: 173 ALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLT 232
ALPAL QL+ S +E +L A W+LS +A G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 233 PALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQI 292
AL + NI +G + Q Q +I+ GA+P L+ +L + + GN EQI
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQI 173
Query: 293 QAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVRE-GCVKPLCDL 350
QAVIDAG + +V LL + +EA WA+SN SGG ++ K V+E G ++ L L
Sbjct: 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGALEKLEQL 230
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 117/235 (49%), Gaps = 13/235 (5%)
Query: 101 SDDVREQ--AVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF 158
SDD++EQ A + D V+ GAL P L +L +L+ A LSN
Sbjct: 23 SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNI 81
Query: 159 CRGKPEPPFDQVRP-----ALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEA 213
G E Q++ ALPAL QL+ S +E +L A W+LS +A G N++IQAVI+A
Sbjct: 82 ASGGNE----QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 137
Query: 214 GVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXX 273
G P LV+LL P+ +L AL + NI +G + Q Q +I+ GA+P L+ +L +
Sbjct: 138 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 197
Query: 274 XXXXXXXXXXXTAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATS 328
+ GN EQ QAV +AG + + L + +KEA A+ S
Sbjct: 198 QEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 100/220 (45%), Gaps = 15/220 (6%)
Query: 216 CPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXX 275
P++ + L A R I++ + Q Q +I+ GA+P L+ +L +
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 276 XXXXXXXXXTAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQI 335
+ GN EQIQAVIDAG + +V LL + +EA WA+SN SGG EQI
Sbjct: 74 ALWALSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQI 131
Query: 336 KHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEE 395
+ ++ G + L LL + +I+ L L NI G N+ Q V +
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQIQAVID 178
Query: 396 AGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEEEDAL 435
AG L + L S N +I ++++ G NE++ A+
Sbjct: 179 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV 218
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ 61
G+ PALV + S N L+ + ++ N I+ VI +G +P V+ L +
Sbjct: 138 GALPALVQ-LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 196
Query: 62 LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWAL 112
LQ EA W L NIASG +E V + GA+ +L S ++ ++++A AL
Sbjct: 197 LQ-EALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 102/186 (54%), Gaps = 3/186 (1%)
Query: 174 LPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTP 233
LP + Q ++S D+ L A LS +A G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 234 ALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQ 293
AL + NI +G + Q Q +I+ GA+P L+ +L + + GN EQIQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQ 132
Query: 294 AVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC 353
AVIDAG + +V LL + +EA WA+SN SGG ++ K V+E +P + L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGAEPALEQLQS 190
Query: 354 SDPEIV 359
S E +
Sbjct: 191 SPNEKI 196
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 101/187 (54%), Gaps = 12/187 (6%)
Query: 148 LRNATRTLSNFCRGKPEPPFDQVRP-----ALPALAQLVHSNDEDVLTYACWSLSYLADG 202
L++A R LS G E Q++ ALPAL QL+ S +E +L A W+LS +A G
Sbjct: 29 LQSALRKLSQIASGGNE----QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 84
Query: 203 TNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLL 262
N++IQAVI+AG P LV+LL P+ +L AL + NI +G + Q Q +I+ GA+P L+
Sbjct: 85 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 144
Query: 263 DMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLIRPIVNLLQNAEFDT-KKEAAW 321
+L + + GN EQ QAV +AG P + LQ++ + +KEA
Sbjct: 145 QLLSSPNEQILQEALWALSNIASGGN-EQKQAVKEAG-AEPALEQLQSSPNEKIQKEAQE 202
Query: 322 AISNATS 328
A+ S
Sbjct: 203 ALEKIQS 209
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 101/207 (48%), Gaps = 15/207 (7%)
Query: 216 CPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXX 275
P++V+ L P L ALR + I +G + Q Q +I+ GA+P L+ +L +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 276 XXXXXXXXXTAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQI 335
+ GN EQIQAVIDAG + +V LL + +EA WA+SN SGG EQI
Sbjct: 74 ALWALSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQI 131
Query: 336 KHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEE 395
+ ++ G + L LL + +I+ L L NI G N+ Q V+E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKE 178
Query: 396 AGGLEKIENLQSHDNNEIHEKSVKIFK 422
AG +E LQS N +I +++ + +
Sbjct: 179 AGAEPALEQLQSSPNEKIQKEAQEALE 205
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 92/177 (51%), Gaps = 10/177 (5%)
Query: 90 VPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLR 149
+P V+ L+SP + A+ L +A V+ GAL P L +L +L+
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQ 72
Query: 150 NATRTLSNFCRGKPEPPFDQVRP-----ALPALAQLVHSNDEDVLTYACWSLSYLADGTN 204
A LSN G E Q++ ALPAL QL+ S +E +L A W+LS +A G N
Sbjct: 73 EALWALSNIASGGNE----QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128
Query: 205 DKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYL 261
++IQAVI+AG P LV+LL P+ +L AL + NI +G + Q Q + GA P L
Sbjct: 129 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPAL 185
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 100/199 (50%), Gaps = 8/199 (4%)
Query: 4 FPALVAGVWSDDNSLQLEATTLSRKL--LSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ 61
P +V + S D Q E + RKL ++ N I+ VI +G +P V+ L +
Sbjct: 14 LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 62 LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR 121
LQ EA W L NIASG +E VID GA+P V+LLSSP++ + ++A+WAL N+A
Sbjct: 71 LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 122 CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFD-QVRPALPALAQL 180
V+ GAL P L +L +L+ A LSN G E + A PAL QL
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQL 188
Query: 181 VHSNDEDVLTYACWSLSYL 199
S +E + A +L +
Sbjct: 189 QSSPNEKIQKEAQEALEKI 207
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 285 TAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCV 344
+G EQIQAVIDAG + +V LL + +EA WA+SN SGG EQI+ ++ G +
Sbjct: 40 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAVIDAGAL 98
Query: 345 KPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIEN 404
L LL + +I+ L L NI G N+ Q V +AG L +
Sbjct: 99 PALVQLLSSPNEQILQEALWALSNIASGG-------------NEQIQAVIDAGALPALVQ 145
Query: 405 LQSHDNNEIHEKSVKIFKTYWCGRNEEEDAL 435
L S N +I ++++ G NE++ A+
Sbjct: 146 LLSSPNEQILQEALWALSNIASGGNEQKQAV 176
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ 61
G+ PALV + S N L+ + ++ N I+ VI +G +P V+ L +
Sbjct: 96 GALPALVQ-LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 154
Query: 62 LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNV 115
LQ EA W L NIASG +E V + GA P +L SSP++ ++++A AL +
Sbjct: 155 LQ-EALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPNEKIQKEAQEALEKI 207
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 100/178 (56%), Gaps = 4/178 (2%)
Query: 174 LPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTP 233
LP + Q ++S D+ L A LS +A G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 234 ALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQ 293
AL + NI +G + Q Q +I+ GA+P L+ +L + + GN EQIQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQ 132
Query: 294 AVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVRE-GCVKPLCDL 350
AVIDAG + +V LL + +EA WA+SN SGG ++ K V+E G ++ L L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGALEKLEQL 188
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 106/209 (50%), Gaps = 15/209 (7%)
Query: 216 CPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXX 275
P++V+ L P L ALR + I +G + Q Q +I+ GA+P L+ +L +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 276 XXXXXXXXXTAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQI 335
+ GN EQIQAVIDAG + +V LL + +EA WA+SN SGG EQI
Sbjct: 74 ALWALSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQI 131
Query: 336 KHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEE 395
+ ++ G + L LL + +I+ L L NI G N+ Q V+E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKE 178
Query: 396 AGGLEKIENLQSHDNNEIHEKSVKIFKTY 424
AG LEK+E LQSH+N +I +++ + +
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALEKL 207
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 98/186 (52%), Gaps = 10/186 (5%)
Query: 148 LRNATRTLSNFCRGKPEPPFDQVRP-----ALPALAQLVHSNDEDVLTYACWSLSYLADG 202
L++A R LS G E Q++ ALPAL QL+ S +E +L A W+LS +A G
Sbjct: 29 LQSALRKLSQIASGGNE----QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 84
Query: 203 TNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLL 262
N++IQAVI+AG P LV+LL P+ +L AL + NI +G + Q Q +I+ GA+P L+
Sbjct: 85 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 144
Query: 263 DMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWA 322
+L + + GN EQ QAV +AG + + L + +KEA A
Sbjct: 145 QLLSSPNEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEA 203
Query: 323 ISNATS 328
+ S
Sbjct: 204 LEKLQS 209
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 95/185 (51%), Gaps = 10/185 (5%)
Query: 90 VPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLR 149
+P V+ L+SP + A+ L +A V+ GAL P L +L +L+
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQ 72
Query: 150 NATRTLSNFCRGKPEPPFDQVRP-----ALPALAQLVHSNDEDVLTYACWSLSYLADGTN 204
A LSN G E Q++ ALPAL QL+ S +E +L A W+LS +A G N
Sbjct: 73 EALWALSNIASGGNE----QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128
Query: 205 DKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDM 264
++IQAVI+AG P LV+LL P+ +L AL + NI +G + Q Q + GA+ L +
Sbjct: 129 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188
Query: 265 LVHNH 269
H +
Sbjct: 189 QSHEN 193
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 98/199 (49%), Gaps = 8/199 (4%)
Query: 4 FPALVAGVWSDDNSLQLEATTLSRKL--LSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ 61
P +V + S D Q E + RKL ++ N I+ VI +G +P V+ L +
Sbjct: 14 LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 62 LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR 121
LQ EA W L NIASG +E VID GA+P V+LLSSP++ + ++A+WAL N+A
Sbjct: 71 LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 122 CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFD-QVRPALPALAQL 180
V+ GAL P L +L +L+ A LSN G E + AL L QL
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188
Query: 181 VHSNDEDVLTYACWSLSYL 199
+E + A +L L
Sbjct: 189 QSHENEKIQKEAQEALEKL 207
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 80/157 (50%), Gaps = 3/157 (1%)
Query: 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ 61
G+ PALV + S N L+ + ++ N I+ VI +G +P V+ L +
Sbjct: 54 GALPALVQ-LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 112
Query: 62 LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR 121
LQ EA W L NIASG +E VID GA+P V+LLSSP++ + ++A+WAL N+A
Sbjct: 113 LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171
Query: 122 CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF 158
+ V GAL L +L H + + A L
Sbjct: 172 QKQAVKEAGAL-EKLEQLQSHENEKIQKEAQEALEKL 207
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 285 TAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCV 344
+G EQIQAVIDAG + +V LL + +EA WA+SN SGG EQI+ ++ G +
Sbjct: 40 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAVIDAGAL 98
Query: 345 KPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIEN 404
L LL + +I+ L L NI G N+ Q V +AG L +
Sbjct: 99 PALVQLLSSPNEQILQEALWALSNIASGG-------------NEQIQAVIDAGALPALVQ 145
Query: 405 LQSHDNNEIHEKSVKIFKTYWCGRNEEEDAL 435
L S N +I ++++ G NE++ A+
Sbjct: 146 LLSSPNEQILQEALWALSNIASGGNEQKQAV 176
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 96/178 (53%), Gaps = 4/178 (2%)
Query: 174 LPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTP 233
LP + Q ++S+D A S + N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 234 ALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQ 293
AL + NI +G + Q Q +I+ GA+P L+ +L + + GN EQIQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQ 132
Query: 294 AVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVRE-GCVKPLCDL 350
AVIDAG + +V LL + +EA WA+SN SGG ++ K V+E G ++ L L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGALEKLEQL 188
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Query: 173 ALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLT 232
ALPAL QL+ S +E +L A W+LS +A G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 233 PALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQI 292
AL + NI +G + Q Q +I+ GA+P L+ +L + + GN EQ
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQK 173
Query: 293 QAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATS 328
QAV +AG + + L + +KEA A+ S
Sbjct: 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 101/207 (48%), Gaps = 15/207 (7%)
Query: 216 CPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXX 275
P++ + L A R I++ + Q Q +I+ GA+P L+ +L +
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 276 XXXXXXXXXTAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQI 335
+ GN EQIQAVIDAG + +V LL + +EA WA+SN SGG EQI
Sbjct: 74 ALWALSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQI 131
Query: 336 KHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEE 395
+ ++ G + L LL + +I+ L L NI G N+ Q V+E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKE 178
Query: 396 AGGLEKIENLQSHDNNEIHEKSVKIFK 422
AG LEK+E LQSH+N +I +++ + +
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALE 205
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 100/198 (50%), Gaps = 6/198 (3%)
Query: 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQ 63
P + + SDD QL AT ++LS D N I+ VI +G +P V+ L + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 64 YEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCR 123
EA W L NIASG +E VID GA+P V+LLSSP++ + ++A+WAL N+A
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 124 DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRP--ALPALAQLV 181
V+ GAL P L +L +L+ A LSN G E V+ AL L QL
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQK-QAVKEAGALEKLEQLQ 189
Query: 182 HSNDEDVLTYACWSLSYL 199
+E + A +L L
Sbjct: 190 SHENEKIQKEAQEALEKL 207
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 80/157 (50%), Gaps = 3/157 (1%)
Query: 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ 61
G+ PALV + S N L+ + ++ N I+ VI +G +P V+ L +
Sbjct: 54 GALPALVQ-LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 112
Query: 62 LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR 121
LQ EA W L NIASG +E VID GA+P V+LLSSP++ + ++A+WAL N+A
Sbjct: 113 LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171
Query: 122 CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF 158
+ V GAL L +L H + + A L
Sbjct: 172 QKQAVKEAGAL-EKLEQLQSHENEKIQKEAQEALEKL 207
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 74/149 (49%), Gaps = 15/149 (10%)
Query: 287 GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKP 346
GN EQIQAVIDAG + +V LL + +EA WA+SN SGG EQI+ ++ G +
Sbjct: 43 GN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAVIDAGALPA 100
Query: 347 LCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQ 406
L LL + +I+ L L NI G N+ Q V +AG L + L
Sbjct: 101 LVQLLSSPNEQILQEALWALSNIASGG-------------NEQIQAVIDAGALPALVQLL 147
Query: 407 SHDNNEIHEKSVKIFKTYWCGRNEEEDAL 435
S N +I ++++ G NE++ A+
Sbjct: 148 SSPNEQILQEALWALSNIASGGNEQKQAV 176
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 108/223 (48%), Gaps = 5/223 (2%)
Query: 149 RNATRTLSNFCRGKPEPPFDQVRPA--LPALAQLVHSNDEDVLTYACWSLSYLADGTNDK 206
+ A R L+ G P + A + L +L+ S D +V A +L+ +A G ++
Sbjct: 20 KEAARDLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 78
Query: 207 IQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLV 266
I+A+++AG LV+LL V A R + NI +G D + I++ G V L+ +L
Sbjct: 79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 138
Query: 267 HNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNA 326
+ G E I+A++DAG + +V LL + + + +KEAA A++N
Sbjct: 139 STDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 197
Query: 327 TSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENI 369
SG T IK +V G V+ L LL +D E+ LENI
Sbjct: 198 ASGPTS-AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 120/286 (41%), Gaps = 48/286 (16%)
Query: 47 VPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVRE 106
V + V+ L D + Q EAA L IASG + ++D G V + VKLL+S +V+
Sbjct: 4 VEKLVKLLTSTDS-ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQ- 61
Query: 107 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPP 166
+ A R L+N G P+
Sbjct: 62 ------------------------------------------KEAARALANIASG-PDEA 78
Query: 167 FDQVRPA--LPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLG 224
+ A + L +L+ S D +V A +L+ +A G ++ I+A+++AG LV+LL
Sbjct: 79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 138
Query: 225 HPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXX 284
V A R + NI +G D + I++ G V L+ +L
Sbjct: 139 STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 198
Query: 285 TAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGG 330
+ G I+A++DAG + + LL + + + +KEA A+ N SGG
Sbjct: 199 S-GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 116/242 (47%), Gaps = 10/242 (4%)
Query: 7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPP--IEKVIQSGVVPRFVEFLMREDYPQLQY 64
LV + S D+ Q EA +R L P I+ ++ +G V V+ L D ++Q
Sbjct: 7 LVKLLTSTDSETQKEA---ARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDS-EVQK 62
Query: 65 EAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD 124
EAA L NIASG E ++D G V + VKLL+S +V+++A AL N+A
Sbjct: 63 EAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 122
Query: 125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPA--LPALAQLVH 182
++ G + +L +L + + A R L+N G P+ + A + L +L+
Sbjct: 123 AIVDAGG-VEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLT 180
Query: 183 SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV 242
S D +V A +L+ +A G I+A+++AG L +LL V A R + NI
Sbjct: 181 STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK 240
Query: 243 TG 244
+G
Sbjct: 241 SG 242
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 116/251 (46%), Gaps = 15/251 (5%)
Query: 177 LAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALR 236
L +L+ S D + A L+ +A G I+A+++AG LV+LL V A R
Sbjct: 7 LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 237 TVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVI 296
+ NI +G D + I++ G V L+ +L + G E I+A++
Sbjct: 67 ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIV 125
Query: 297 DAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDP 356
DAG + +V LL + + + +KEAA A++N S G E IK +V G V+ L LL +D
Sbjct: 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDS 184
Query: 357 EIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEK 416
E+ EA R + + + +AGG+E ++ L + ++E+ ++
Sbjct: 185 EVQK-------------EAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKE 231
Query: 417 SVKIFKTYWCG 427
+ + + G
Sbjct: 232 AQRALENIKSG 242
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 14/145 (9%)
Query: 286 AGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVK 345
+G I+A++DAG + +V LL + + + +KEAA A++N SG E IK +V G V+
Sbjct: 31 SGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVE 89
Query: 346 PLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENL 405
L LL +D E+ EA R + ++ + + +AGG+E + L
Sbjct: 90 VLVKLLTSTDSEVQK-------------EAARALANIASGPDEAIKAIVDAGGVEVLVKL 136
Query: 406 QSHDNNEIHEKSVKIFKTYWCGRNE 430
+ ++E+ +++ + G +E
Sbjct: 137 LTSTDSEVQKEAARALANIASGPDE 161
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 14/130 (10%)
Query: 301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT 360
+ +V LL + + +T+KEAA ++ SG IK +V G V+ L LL +D E+
Sbjct: 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPAS-AIKAIVDAGGVEVLVKLLTSTDSEVQK 62
Query: 361 VCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI 420
EA R + ++ + + +AGG+E + L + ++E+ +++ +
Sbjct: 63 -------------EAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARA 109
Query: 421 FKTYWCGRNE 430
G +E
Sbjct: 110 LANIASGPDE 119
>pdb|2DB0|A Chain A, Crystal Structure Of Ph0542
pdb|2DB0|B Chain B, Crystal Structure Of Ph0542
Length = 253
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 145 LSMLRNATR----TLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLA 200
+SML + R T NF E F V P LP + L+H DE V A +L +LA
Sbjct: 150 MSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLA 209
Query: 201 DGTNDKIQAVIEAGVCPRLVEL 222
NDK++ V V RL EL
Sbjct: 210 -TLNDKLRKV----VIKRLEEL 226
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 22/137 (16%)
Query: 72 NIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA 131
N+ T+ +V+ D +P+ + LL P+ DVR A +A+ D+ RD
Sbjct: 143 NVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRD------C 196
Query: 132 LIPLLAELNEHAKLSML-----RNATRTLSNFCRG-KPEPPFDQV---------RPALPA 176
+ L + NE ++ + R R LS C K +D + + LP
Sbjct: 197 FVEXLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLPV 256
Query: 177 L-AQLVHSNDEDVLTYA 192
L L +D +++T A
Sbjct: 257 LDTXLYKFDDNEIITSA 273
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 106/263 (40%), Gaps = 25/263 (9%)
Query: 20 LEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSE 79
L TT ++L++ ++ SG V + Y +L + + VL + S S
Sbjct: 293 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL-KVLSVCSS 351
Query: 80 NTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAEL 139
N +++ G + L+ PS + + +W L N++ + + + G L+ LL
Sbjct: 352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSD 411
Query: 140 NEHAKLSMLRNATRTLSNF-CRGKPEPPFDQVRPALPALAQLV--HSNDEDVLTYACWSL 196
+ ++++ A LSN C + AL + V + ED+ A +L
Sbjct: 412 D----INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467
Query: 197 SYLADGTNDKIQA----VIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCI 252
+L D A + G+ P +V+LL PS L A TVG I C
Sbjct: 468 RHLTSRHQDAEMAQNAVRLHYGL-PVVVKLLHPPSHWPLIKA--TVGLIRN----LALCP 520
Query: 253 INH------GAVPYLLDMLVHNH 269
NH GA+P L+ +LV H
Sbjct: 521 ANHAPLREQGAIPRLVQLLVRAH 543
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 83/212 (39%), Gaps = 15/212 (7%)
Query: 184 NDEDVLTYACWS-----LSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV 238
N DV T C S LS+ +G + A+ ++G P LV +LG P SVL A+ T+
Sbjct: 203 NTNDVETARCTSGTLHNLSHHREG----LLAIFKSGGIPALVNMLGSPVDSVLFHAITTL 258
Query: 239 GNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDA 298
N++ + + G + ++ +L + GN+E ++ +
Sbjct: 259 HNLLLHQEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQESKLIILAS 317
Query: 299 GLIRPIVNLLQNAEFDTKKEAAWAISNATS--GGTQEQIKHLVREGCVKPLCDLLLCSDP 356
G + +VN+++ ++ + W S +V G ++ L L
Sbjct: 318 GGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 374
Query: 357 EIVTVCLIGLENILKVGEAERNMGTTIGDVNQ 388
+V CL L N+ + M +G + Q
Sbjct: 375 RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 406
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 20/96 (20%)
Query: 43 QSGVVPRFVEFLMREDY----------PQLQY----------EAAWVLINIASGTSENTN 82
+ G +PR V+ L+R Q Q+ EA ++I + N
Sbjct: 528 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRI 587
Query: 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGD 118
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 588 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 623
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 4/160 (2%)
Query: 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA 143
+ G +P VK+L SP D V A+ L N+ + V G L ++A LN+
Sbjct: 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 155
Query: 144 KLSMLRNATRTLSNFCRGKPEPPFDQVRPALP-ALAQLVHS-NDEDVLTYACWSLSYLAD 201
+ L T L G E + P AL ++ + E +L L L+
Sbjct: 156 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215
Query: 202 GTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
+++K A++EAG L L PS ++ L T+ N+
Sbjct: 216 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 112/281 (39%), Gaps = 26/281 (9%)
Query: 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ 61
G +VA + + N L TT ++L++ ++ SG V + Y +
Sbjct: 143 GGLQKMVA-LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK 201
Query: 62 LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR 121
L + + VL + S S N +++ G + L+ PS + + +W L N++ + +
Sbjct: 202 LLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 260
Query: 122 CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF-CRGKPEPPFDQVRPALPALAQL 180
+ G L+ LL ++++ A LSN C + AL +
Sbjct: 261 QEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 316
Query: 181 V--HSNDEDVLTYACWSLSYLADGTNDKIQA----VIEAGVCPRLVELLGHPSPSVLTPA 234
V + ED+ A +L +L + A + G+ P +V+LL PS L A
Sbjct: 317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL-PVVVKLLHPPSHWPLIKA 375
Query: 235 LRTVGNIVTGDDFQTQCIINH------GAVPYLLDMLVHNH 269
TVG I C NH GA+P L+ +LV H
Sbjct: 376 --TVGLIRN----LALCPANHAPLREQGAIPRLVQLLVRAH 410
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 184 NDEDVLTYACWS-----LSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV 238
N DV T C + LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 70 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 125
Query: 239 GNIV 242
N++
Sbjct: 126 HNLL 129
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 20/97 (20%)
Query: 43 QSGVVPRFVEFLMREDY----------PQLQYEAAWVLINIASGTS----------ENTN 82
+ G +PR V+ L+R Q Q+ + I G + N
Sbjct: 395 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 454
Query: 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS 119
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 455 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 491
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 112/281 (39%), Gaps = 26/281 (9%)
Query: 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ 61
G +VA + + N L TT ++L++ ++ SG V + Y +
Sbjct: 141 GGLQKMVA-LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK 199
Query: 62 LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR 121
L + + VL + S S N +++ G + L+ PS + + +W L N++ + +
Sbjct: 200 LLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 258
Query: 122 CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF-CRGKPEPPFDQVRPALPALAQL 180
+ G L+ LL ++++ A LSN C + AL +
Sbjct: 259 QEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 314
Query: 181 V--HSNDEDVLTYACWSLSYLADGTNDKIQA----VIEAGVCPRLVELLGHPSPSVLTPA 234
V + ED+ A +L +L + A + G+ P +V+LL PS L A
Sbjct: 315 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL-PVVVKLLHPPSHWPLIKA 373
Query: 235 LRTVGNIVTGDDFQTQCIINH------GAVPYLLDMLVHNH 269
TVG I C NH GA+P L+ +LV H
Sbjct: 374 --TVGLIRN----LALCPANHAPLREQGAIPRLVQLLVRAH 408
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 4/160 (2%)
Query: 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA 143
+ G +P VK+L SP D V A+ L N+ + V G L ++A LN+
Sbjct: 95 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 153
Query: 144 KLSMLRNATRTLSNFCRGKPEPPFDQVRPALP-ALAQLVHS-NDEDVLTYACWSLSYLAD 201
+ L T L G E + P AL ++ + E +L L L+
Sbjct: 154 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 213
Query: 202 GTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
+++K A++EAG L L PS ++ L T+ N+
Sbjct: 214 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 252
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 184 NDEDVLTYACWS-----LSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV 238
N DV T C + LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 68 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 123
Query: 239 GNIV 242
N++
Sbjct: 124 HNLL 127
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 43 QSGVVPRFVEFLMREDY----------PQLQYEAAWVLINIASGTS----------ENTN 82
+ G +PR V+ L+R Q Q+ + I G + N
Sbjct: 393 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 452
Query: 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGD 118
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 453 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 112/281 (39%), Gaps = 26/281 (9%)
Query: 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ 61
G +VA + + N L TT ++L++ ++ SG V + Y +
Sbjct: 128 GGLQKMVA-LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK 186
Query: 62 LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR 121
L + + VL + S S N +++ G + L+ PS + + +W L N++ + +
Sbjct: 187 LLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 245
Query: 122 CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF-CRGKPEPPFDQVRPALPALAQL 180
+ G L+ LL ++++ A LSN C + AL +
Sbjct: 246 QEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 301
Query: 181 V--HSNDEDVLTYACWSLSYLADGTNDKIQA----VIEAGVCPRLVELLGHPSPSVLTPA 234
V + ED+ A +L +L + A + G+ P +V+LL PS L A
Sbjct: 302 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL-PVVVKLLHPPSHWPLIKA 360
Query: 235 LRTVGNIVTGDDFQTQCIINH------GAVPYLLDMLVHNH 269
TVG I C NH GA+P L+ +LV H
Sbjct: 361 --TVGLIRN----LALCPANHAPLREQGAIPRLVQLLVRAH 395
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 4/160 (2%)
Query: 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA 143
+ G +P VK+L SP D V A+ L N+ + V G L ++A LN+
Sbjct: 82 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 140
Query: 144 KLSMLRNATRTLSNFCRGKPEPPFDQVRPALP-ALAQLVHS-NDEDVLTYACWSLSYLAD 201
+ L T L G E + P AL ++ + E +L L L+
Sbjct: 141 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 200
Query: 202 GTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
+++K A++EAG L L PS ++ L T+ N+
Sbjct: 201 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 239
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 10/136 (7%)
Query: 184 NDEDVLTYACWS-----LSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV 238
N DV T C + LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 55 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 110
Query: 239 GNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDA 298
N++ + + G + ++ +L + GN+E ++ +
Sbjct: 111 HNLLLHQEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQESKLIILAS 169
Query: 299 GLIRPIVNLLQNAEFD 314
G + +VN+++ ++
Sbjct: 170 GGPQALVNIMRTYTYE 185
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 43 QSGVVPRFVEFLMREDY----------PQLQYEAAWVLINIASGTS----------ENTN 82
+ G +PR V+ L+R Q Q+ + I G + N
Sbjct: 380 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 439
Query: 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGD 118
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 440 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 112/281 (39%), Gaps = 26/281 (9%)
Query: 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ 61
G +VA + + N L TT ++L++ ++ SG V + Y +
Sbjct: 128 GGLQKMVA-LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK 186
Query: 62 LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR 121
L + + VL + S S N +++ G + L+ PS + + +W L N++ + +
Sbjct: 187 LLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 245
Query: 122 CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF-CRGKPEPPFDQVRPALPALAQL 180
+ G L+ LL ++++ A LSN C + AL +
Sbjct: 246 QEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 301
Query: 181 V--HSNDEDVLTYACWSLSYLADGTNDKIQA----VIEAGVCPRLVELLGHPSPSVLTPA 234
V + ED+ A +L +L + A + G+ P +V+LL PS L A
Sbjct: 302 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL-PVVVKLLHPPSHWPLIKA 360
Query: 235 LRTVGNIVTGDDFQTQCIINH------GAVPYLLDMLVHNH 269
TVG I C NH GA+P L+ +LV H
Sbjct: 361 --TVGLIRN----LALCPANHAPLREQGAIPRLVQLLVRAH 395
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 4/160 (2%)
Query: 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA 143
+ G +P VK+L SP D V A+ L N+ + V G L ++A LN+
Sbjct: 82 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 140
Query: 144 KLSMLRNATRTLSNFCRGKPEPPFDQVRPALP-ALAQLVHS-NDEDVLTYACWSLSYLAD 201
+ L T L G E + P AL ++ + E +L L L+
Sbjct: 141 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 200
Query: 202 GTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
+++K A++EAG L L PS ++ L T+ N+
Sbjct: 201 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 239
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 184 NDEDVLTYACWS-----LSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV 238
N DV T C + LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 55 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 110
Query: 239 GNIV 242
N++
Sbjct: 111 HNLL 114
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 20/97 (20%)
Query: 43 QSGVVPRFVEFLMREDY----------PQLQYEAAWVLINIASGTS----------ENTN 82
+ G +PR V+ L+R Q Q+ + I G + N
Sbjct: 380 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 439
Query: 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS 119
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 440 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 476
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 112/281 (39%), Gaps = 26/281 (9%)
Query: 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ 61
G +VA + + N L TT ++L++ ++ SG V + Y +
Sbjct: 145 GGLQKMVA-LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK 203
Query: 62 LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR 121
L + + VL + S S N +++ G + L+ PS + + +W L N++ + +
Sbjct: 204 LLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 262
Query: 122 CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF-CRGKPEPPFDQVRPALPALAQL 180
+ G L+ LL ++++ A LSN C + AL +
Sbjct: 263 QEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 318
Query: 181 V--HSNDEDVLTYACWSLSYLADGTNDKIQA----VIEAGVCPRLVELLGHPSPSVLTPA 234
V + ED+ A +L +L + A + G+ P +V+LL PS L A
Sbjct: 319 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL-PVVVKLLHPPSHWPLIKA 377
Query: 235 LRTVGNIVTGDDFQTQCIINH------GAVPYLLDMLVHNH 269
TVG I C NH GA+P L+ +LV H
Sbjct: 378 --TVGLIRN----LALCPANHAPLREQGAIPRLVQLLVRAH 412
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 4/160 (2%)
Query: 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA 143
+ G +P VK+L SP D V A+ L N+ + V G L ++A LN+
Sbjct: 99 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 157
Query: 144 KLSMLRNATRTLSNFCRGKPEPPFDQVRPALP-ALAQLVHS-NDEDVLTYACWSLSYLAD 201
+ L T L G E + P AL ++ + E +L L L+
Sbjct: 158 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 217
Query: 202 GTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
+++K A++EAG L L PS ++ L T+ N+
Sbjct: 218 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 256
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 184 NDEDVLTYACWS-----LSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV 238
N DV T C + LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 72 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 127
Query: 239 GNIV 242
N++
Sbjct: 128 HNLL 131
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 20/97 (20%)
Query: 43 QSGVVPRFVEFLMREDY----------PQLQYEAAWVLINIASGTS----------ENTN 82
+ G +PR V+ L+R Q Q+ + I G + N
Sbjct: 397 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 456
Query: 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS 119
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 457 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 493
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 4/160 (2%)
Query: 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA 143
+ G +P VK+L SP D V A+ L N+ + V G L ++A LN+
Sbjct: 99 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 157
Query: 144 KLSMLRNATRTLSNFCRGKPEPPFDQVRPALP-ALAQLVHS-NDEDVLTYACWSLSYLAD 201
+ L T L G E + P AL ++ + E +L L L+
Sbjct: 158 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 217
Query: 202 GTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
+++K A++EAG L L PS ++ L T+ N+
Sbjct: 218 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 256
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 112/281 (39%), Gaps = 26/281 (9%)
Query: 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ 61
G +VA + + N L TT ++L++ ++ SG V + Y +
Sbjct: 145 GGLQKMVA-LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK 203
Query: 62 LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR 121
L + + VL + S S N +++ G + L+ PS + + +W L N++ + +
Sbjct: 204 LLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 262
Query: 122 CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF-CRGKPEPPFDQVRPALPALAQL 180
+ G L+ LL ++++ A LSN C + AL +
Sbjct: 263 QEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 318
Query: 181 V--HSNDEDVLTYACWSLSYLADGTNDKIQA----VIEAGVCPRLVELLGHPSPSVLTPA 234
V + ED+ A +L +L + A + G+ P +V+LL PS L A
Sbjct: 319 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL-PVVVKLLHPPSHWPLIKA 377
Query: 235 LRTVGNIVTGDDFQTQCIINH------GAVPYLLDMLVHNH 269
TVG I C NH GA+P L+ +LV H
Sbjct: 378 --TVGLIRN----LALCPANHAPLREQGAIPRLVQLLVRAH 412
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 184 NDEDVLTYACWS-----LSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV 238
N DV T C + LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 72 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 127
Query: 239 GNIV 242
N++
Sbjct: 128 HNLL 131
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 20/97 (20%)
Query: 43 QSGVVPRFVEFLMREDY----------PQLQYEAAWVLINIASGTS----------ENTN 82
+ G +PR V+ L+R Q Q+ + I G + N
Sbjct: 397 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 456
Query: 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS 119
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 457 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 493
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 2/159 (1%)
Query: 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA 143
+ G +P VK+L SP D V A+ L N+ + V G L ++A LN+
Sbjct: 101 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 159
Query: 144 KLSMLRNATRTLSNFCRGKPEPPFDQVRPALP-ALAQLVHSNDEDVLTYACWSLSYLADG 202
+ L T L G E + P AL ++ + + L + + +
Sbjct: 160 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 219
Query: 203 TNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
+ A++EAG L L PS ++ L T+ N+
Sbjct: 220 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 258
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 112/281 (39%), Gaps = 26/281 (9%)
Query: 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ 61
G +VA + + N L TT ++L++ ++ SG V + Y +
Sbjct: 147 GGLQKMVA-LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK 205
Query: 62 LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR 121
L + + VL + S S N +++ G + L+ PS + + +W L N++ + +
Sbjct: 206 LLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 264
Query: 122 CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF-CRGKPEPPFDQVRPALPALAQL 180
+ G L+ LL ++++ A LSN C + AL +
Sbjct: 265 QEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 320
Query: 181 V--HSNDEDVLTYACWSLSYLADGTNDKIQA----VIEAGVCPRLVELLGHPSPSVLTPA 234
V + ED+ A +L +L + A + G+ P +V+LL PS L A
Sbjct: 321 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL-PVVVKLLHPPSHWPLIKA 379
Query: 235 LRTVGNIVTGDDFQTQCIINH------GAVPYLLDMLVHNH 269
TVG I C NH GA+P L+ +LV H
Sbjct: 380 --TVGLIRN----LALCPANHAPLREQGAIPRLVQLLVRAH 414
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 184 NDEDVLTYACWS-----LSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV 238
N DV T C + LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 74 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 129
Query: 239 GNIV 242
N++
Sbjct: 130 HNLL 133
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 20/97 (20%)
Query: 43 QSGVVPRFVEFLMREDY----------PQLQYEAAWVLINIASGTS----------ENTN 82
+ G +PR V+ L+R Q Q+ + I G + N
Sbjct: 399 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 458
Query: 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS 119
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 459 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 495
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 112/281 (39%), Gaps = 26/281 (9%)
Query: 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ 61
G +VA + + N L TT ++L++ ++ SG V + Y +
Sbjct: 144 GGLQKMVA-LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK 202
Query: 62 LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR 121
L + + VL + S S N +++ G + L+ PS + + +W L N++ + +
Sbjct: 203 LLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 261
Query: 122 CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF-CRGKPEPPFDQVRPALPALAQL 180
+ G L+ LL ++++ A LSN C + AL +
Sbjct: 262 QEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 317
Query: 181 V--HSNDEDVLTYACWSLSYLADGTNDKIQA----VIEAGVCPRLVELLGHPSPSVLTPA 234
V + ED+ A +L +L + A + G+ P +V+LL PS L A
Sbjct: 318 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL-PVVVKLLHPPSHWPLIKA 376
Query: 235 LRTVGNIVTGDDFQTQCIINH------GAVPYLLDMLVHNH 269
TVG I C NH GA+P L+ +LV H
Sbjct: 377 --TVGLIRN----LALCPANHAPLREQGAIPRLVQLLVRAH 411
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 2/159 (1%)
Query: 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA 143
+ G +P VK+L SP D V A+ L N+ + V G L ++A LN+
Sbjct: 98 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 156
Query: 144 KLSMLRNATRTLSNFCRGKPEPPFDQVRPALP-ALAQLVHSNDEDVLTYACWSLSYLADG 202
+ L T L G E + P AL ++ + + L + + +
Sbjct: 157 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 216
Query: 203 TNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
+ A++EAG L L PS ++ L T+ N+
Sbjct: 217 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 255
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 184 NDEDVLTYACWS-----LSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV 238
N DV T C + LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 71 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 126
Query: 239 GNIV 242
N++
Sbjct: 127 HNLL 130
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 20/97 (20%)
Query: 43 QSGVVPRFVEFLMREDY----------PQLQYEAAWVLINIASGTS----------ENTN 82
+ G +PR V+ L+R Q Q+ + I G + N
Sbjct: 396 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 455
Query: 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS 119
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 456 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 492
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 2/159 (1%)
Query: 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA 143
+ G +P VK+L SP D V A+ L N+ + V G L ++A LN+
Sbjct: 100 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 158
Query: 144 KLSMLRNATRTLSNFCRGKPEPPFDQVRPALP-ALAQLVHSNDEDVLTYACWSLSYLADG 202
+ L T L G E + P AL ++ + + L + + +
Sbjct: 159 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 218
Query: 203 TNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
+ A++EAG L L PS ++ L T+ N+
Sbjct: 219 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 257
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 112/281 (39%), Gaps = 26/281 (9%)
Query: 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ 61
G +VA + + N L TT ++L++ ++ SG V + Y +
Sbjct: 146 GGLQKMVA-LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK 204
Query: 62 LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR 121
L + + VL + S S N +++ G + L+ PS + + +W L N++ + +
Sbjct: 205 LLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 263
Query: 122 CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF-CRGKPEPPFDQVRPALPALAQL 180
+ G L+ LL ++++ A LSN C + AL +
Sbjct: 264 QEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 319
Query: 181 V--HSNDEDVLTYACWSLSYLADGTNDKIQA----VIEAGVCPRLVELLGHPSPSVLTPA 234
V + ED+ A +L +L + A + G+ P +V+LL PS L A
Sbjct: 320 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL-PVVVKLLHPPSHWPLIKA 378
Query: 235 LRTVGNIVTGDDFQTQCIINH------GAVPYLLDMLVHNH 269
TVG I C NH GA+P L+ +LV H
Sbjct: 379 --TVGLIRN----LALCPANHAPLREQGAIPRLVQLLVRAH 413
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 184 NDEDVLTYACWS-----LSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV 238
N DV T C + LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 73 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 128
Query: 239 GNIV 242
N++
Sbjct: 129 HNLL 132
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 20/97 (20%)
Query: 43 QSGVVPRFVEFLMREDY----------PQLQYEAAWVLINIASGTS----------ENTN 82
+ G +PR V+ L+R Q Q+ + I G + N
Sbjct: 398 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 457
Query: 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS 119
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 458 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 494
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 112/281 (39%), Gaps = 26/281 (9%)
Query: 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ 61
G +VA + + N L TT ++L++ ++ SG V + Y +
Sbjct: 130 GGLQKMVA-LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK 188
Query: 62 LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR 121
L + + VL + S S N +++ G + L+ PS + + +W L N++ + +
Sbjct: 189 LLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 247
Query: 122 CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF-CRGKPEPPFDQVRPALPALAQL 180
+ G L+ LL ++++ A LSN C + AL +
Sbjct: 248 QEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 303
Query: 181 V--HSNDEDVLTYACWSLSYLADGTNDKIQA----VIEAGVCPRLVELLGHPSPSVLTPA 234
V + ED+ A +L +L + A + G+ P +V+LL PS L A
Sbjct: 304 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL-PVVVKLLHPPSHWPLIKA 362
Query: 235 LRTVGNIVTGDDFQTQCIINH------GAVPYLLDMLVHNH 269
TVG I C NH GA+P L+ +LV H
Sbjct: 363 --TVGLIRN----LALCPANHAPLREQGAIPRLVQLLVRAH 397
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 4/160 (2%)
Query: 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA 143
+ G +P VK+L SP D V A+ L N+ + V G L ++A LN+
Sbjct: 84 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 142
Query: 144 KLSMLRNATRTLSNFCRGKPEPPFDQVRPALP-ALAQLVHS-NDEDVLTYACWSLSYLAD 201
+ L T L G E + P AL ++ + E +L L L+
Sbjct: 143 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 202
Query: 202 GTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
+++K A++EAG L L PS ++ L T+ N+
Sbjct: 203 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 241
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 10/136 (7%)
Query: 184 NDEDVLTYACWS-----LSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV 238
N DV T C + LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 57 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 112
Query: 239 GNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDA 298
N++ + + G + ++ +L + GN+E ++ +
Sbjct: 113 HNLLLHQEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQESKLIILAS 171
Query: 299 GLIRPIVNLLQNAEFD 314
G + +VN+++ ++
Sbjct: 172 GGPQALVNIMRTYTYE 187
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 43 QSGVVPRFVEFLMREDY----------PQLQYEAAWVLINIASGTS----------ENTN 82
+ G +PR V+ L+R Q Q+ + I G + N
Sbjct: 382 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 441
Query: 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGD 118
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 442 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 477
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 4/160 (2%)
Query: 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA 143
+ G +P VK+L SP D V A+ L N+ + V G L ++A LN+
Sbjct: 86 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 144
Query: 144 KLSMLRNATRTLSNFCRGKPEPPFDQVRPALP-ALAQLVHS-NDEDVLTYACWSLSYLAD 201
+ L T L G E + P AL ++ + E +L L L+
Sbjct: 145 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 204
Query: 202 GTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
+++K A++EAG L L PS ++ L T+ N+
Sbjct: 205 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 243
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 112/281 (39%), Gaps = 26/281 (9%)
Query: 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ 61
G +VA + + N L TT ++L++ ++ SG V + Y +
Sbjct: 132 GGLQKMVA-LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK 190
Query: 62 LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR 121
L + + VL + S S N +++ G + L+ PS + + +W L N++ + +
Sbjct: 191 LLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 249
Query: 122 CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF-CRGKPEPPFDQVRPALPALAQL 180
+ G L+ LL ++++ A LSN C + AL +
Sbjct: 250 QEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 305
Query: 181 V--HSNDEDVLTYACWSLSYLADGTNDKIQA----VIEAGVCPRLVELLGHPSPSVLTPA 234
V + ED+ A +L +L + A + G+ P +V+LL PS L A
Sbjct: 306 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL-PVVVKLLHPPSHWPLIKA 364
Query: 235 LRTVGNIVTGDDFQTQCIINH------GAVPYLLDMLVHNH 269
TVG I C NH GA+P L+ +LV H
Sbjct: 365 --TVGLIRN----LALCPANHAPLREQGAIPRLVQLLVRAH 399
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 10/136 (7%)
Query: 184 NDEDVLTYACWS-----LSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV 238
N DV T C + LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 59 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 114
Query: 239 GNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDA 298
N++ + + G + ++ +L + GN+E ++ +
Sbjct: 115 HNLLLHQEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQESKLIILAS 173
Query: 299 GLIRPIVNLLQNAEFD 314
G + +VN+++ ++
Sbjct: 174 GGPQALVNIMRTYTYE 189
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 43 QSGVVPRFVEFLMREDY----------PQLQYEAAWVLINIASGTS----------ENTN 82
+ G +PR V+ L+R Q Q+ + I G + N
Sbjct: 384 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 443
Query: 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGD 118
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 444 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 479
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 4/160 (2%)
Query: 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA 143
+ G +P VK+L SP D V A+ L N+ + V G L ++A LN+
Sbjct: 95 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 153
Query: 144 KLSMLRNATRTLSNFCRGKPEPPFDQVRPALP-ALAQLVHS-NDEDVLTYACWSLSYLAD 201
+ L T L G E + P AL ++ + E +L L L+
Sbjct: 154 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 213
Query: 202 GTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
+++K A++EAG L L PS ++ L T+ N+
Sbjct: 214 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 252
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 112/281 (39%), Gaps = 26/281 (9%)
Query: 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ 61
G +VA + + N L TT ++L++ ++ SG V + Y +
Sbjct: 141 GGLQKMVA-LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK 199
Query: 62 LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR 121
L + + VL + S S N +++ G + L+ PS + + +W L N++ + +
Sbjct: 200 LLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 258
Query: 122 CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF-CRGKPEPPFDQVRPALPALAQL 180
+ G L+ LL ++++ A LSN C + AL +
Sbjct: 259 QEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 314
Query: 181 V--HSNDEDVLTYACWSLSYLADGTNDKIQA----VIEAGVCPRLVELLGHPSPSVLTPA 234
V + ED+ A +L +L + A + G+ P +V+LL PS L A
Sbjct: 315 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL-PVVVKLLHPPSHWPLIKA 373
Query: 235 LRTVGNIVTGDDFQTQCIINH------GAVPYLLDMLVHNH 269
TVG I C NH GA+P L+ +LV H
Sbjct: 374 --TVGLIRN----LALCPANHAPLREQGAIPRLVQLLVRAH 408
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 10/136 (7%)
Query: 184 NDEDVLTYACWS-----LSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV 238
N DV T C + LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 68 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 123
Query: 239 GNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDA 298
N++ + + G + ++ +L + GN+E ++ +
Sbjct: 124 HNLLLHQEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQESKLIILAS 182
Query: 299 GLIRPIVNLLQNAEFD 314
G + +VN+++ ++
Sbjct: 183 GGPQALVNIMRTYTYE 198
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 43 QSGVVPRFVEFLMREDY----------PQLQYEAAWVLINIASGTS----------ENTN 82
+ G +PR V+ L+R Q Q+ + I G + N
Sbjct: 393 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 452
Query: 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGD 118
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 453 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 2/159 (1%)
Query: 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA 143
+ G +P VK+L SP D V A+ L N+ + V G L ++A LN+
Sbjct: 94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 152
Query: 144 KLSMLRNATRTLSNFCRGKPEPPFDQVRPALP-ALAQLVHSNDEDVLTYACWSLSYLADG 202
+ L T L G E + P AL ++ + + L + + +
Sbjct: 153 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212
Query: 203 TNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
+ A++EAG L L PS ++ L T+ N+
Sbjct: 213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 112/281 (39%), Gaps = 26/281 (9%)
Query: 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ 61
G +VA + + N L TT ++L++ ++ SG V + Y +
Sbjct: 140 GGLQKMVA-LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK 198
Query: 62 LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR 121
L + + VL + S S N +++ G + L+ PS + + +W L N++ + +
Sbjct: 199 LLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 257
Query: 122 CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF-CRGKPEPPFDQVRPALPALAQL 180
+ G L+ LL ++++ A LSN C + AL +
Sbjct: 258 QEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 313
Query: 181 V--HSNDEDVLTYACWSLSYLADGTNDKIQA----VIEAGVCPRLVELLGHPSPSVLTPA 234
V + ED+ A +L +L + A + G+ P +V+LL PS L A
Sbjct: 314 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL-PVVVKLLHPPSHWPLIKA 372
Query: 235 LRTVGNIVTGDDFQTQCIINH------GAVPYLLDMLVHNH 269
TVG I C NH GA+P L+ +LV H
Sbjct: 373 --TVGLIRN----LALCPANHAPLREQGAIPRLVQLLVRAH 407
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 84/212 (39%), Gaps = 15/212 (7%)
Query: 184 NDEDVLTYACWS-----LSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV 238
N DV T C + LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 67 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122
Query: 239 GNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDA 298
N++ + + G + ++ +L + GN+E ++ +
Sbjct: 123 HNLLLHQEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQESKLIILAS 181
Query: 299 GLIRPIVNLLQNAEFDTKKEAAWAISNATS--GGTQEQIKHLVREGCVKPLCDLLLCSDP 356
G + +VN+++ ++ + W S +V G ++ L L
Sbjct: 182 GGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 238
Query: 357 EIVTVCLIGLENILKVGEAERNMGTTIGDVNQ 388
+V CL L N+ + M +G + Q
Sbjct: 239 RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 270
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 20/97 (20%)
Query: 43 QSGVVPRFVEFLMREDY----------PQLQYEAAWVLINIASGTS----------ENTN 82
+ G +PR V+ L+R Q Q+ + I G + N
Sbjct: 392 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 451
Query: 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS 119
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 452 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 488
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 184 NDEDVLTYACWS-----LSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV 238
N DV T C + LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 66 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 121
Query: 239 GNIV 242
N++
Sbjct: 122 HNLL 125
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE 141
+ G +P VK+L SP D V A+ L N+ + V G L ++A LN+
Sbjct: 93 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 150
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 184 NDEDVLTYACWS-----LSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV 238
N DV T C + LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 66 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 121
Query: 239 GNIV 242
N++
Sbjct: 122 HNLL 125
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE 141
+ G +P VK+L SP D V A+ L N+ + V G L ++A LN+
Sbjct: 93 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 150
>pdb|3TJZ|B Chain B, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|E Chain E, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 355
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 50 FVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAV 109
F+E +R + + YEAA ++N+ +++ AV + SSP +R AV
Sbjct: 254 FIESCLRNKHEMVVYEAASAIVNLPGCSAKELA-----PAVSVLQLFCSSPKAALRYAAV 308
Query: 110 WALGNVAGDSP 120
L VA P
Sbjct: 309 RTLNKVAMKHP 319
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 43 QSGVVPRFVEFLMREDY----------PQLQY----------EAAWVLINIASGTSENTN 82
+ G +PR V+ L+R Q Q+ E ++I + N
Sbjct: 337 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRXEEIVEGCTGALHILARDVHNRI 396
Query: 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGD 118
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 397 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 432
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 184 NDEDVLTYACWS-----LSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV 238
N DV T C + LS+ +G + A+ ++G P LV+ LG P SVL A+ T+
Sbjct: 12 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKXLGSPVDSVLFYAITTL 67
Query: 239 GNIV 242
N++
Sbjct: 68 HNLL 71
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 105/263 (39%), Gaps = 25/263 (9%)
Query: 20 LEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSE 79
L TT ++L++ ++ SG V Y +L + + VL + S S
Sbjct: 102 LAITTDCLQILAYGNQESKLIILASGGPQALVNIXRTYTYEKLLWTTSRVL-KVLSVCSS 160
Query: 80 NTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAEL 139
N +++ G L+ PS + + +W L N++ + + G L+ LL
Sbjct: 161 NKPAIVEAGGXQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGXEGLLGTLVQLLGS- 219
Query: 140 NEHAKLSMLRNATRTLSNF-CRG-KPEPPFDQVRPALPALAQLVHSND-EDVLTYACWSL 196
++++ A LSN C K + QV + ++ + D ED+ A +L
Sbjct: 220 ---DDINVVTCAAGILSNLTCNNYKNKXXVCQVGGIEALVRTVLRAGDREDITEPAICAL 276
Query: 197 SYLADGTNDKIQA----VIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCI 252
+L + A + G+ P +V+LL PS L A TVG I C
Sbjct: 277 RHLTSRHQEAEXAQNAVRLHYGL-PVVVKLLHPPSHWPLIKA--TVGLIRN----LALCP 329
Query: 253 INH------GAVPYLLDMLVHNH 269
NH GA+P L+ +LV H
Sbjct: 330 ANHAPLREQGAIPRLVQLLVRAH 352
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 11/120 (9%)
Query: 43 QSGVVPRFVEFLMRE-DYPQLQYEAAWVLI--NIASGTSENTNVVIDHGAVPIFVKLLSS 99
+ +VP + F+ P +Y A V+ +I G N + A+P ++L+
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILEGPEPNQLKPLVIQAMPTLIELMKD 419
Query: 100 PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFC 159
PS VR+ W +G + P + ++ L PLL L E L R SN C
Sbjct: 420 PSVVVRDTTAWTVGRICELLP---EAAINDVYLAPLLQCLIEG-----LSAEPRVASNVC 471
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 89 AVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSML 148
A+P ++L+ PS VR+ A W +G + P + ++ L PLL L E L
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEG-----L 460
Query: 149 RNATRTLSNFC 159
R SN C
Sbjct: 461 SAEPRVASNVC 471
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 89 AVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSML 148
A+P ++L+ PS VR+ A W +G + P + ++ L PLL L E L
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEG-----L 460
Query: 149 RNATRTLSNFC 159
R SN C
Sbjct: 461 SAEPRVASNVC 471
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 89 AVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSML 148
A+P ++L+ PS VR+ A W +G + P + ++ L PLL L E L
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEG-----L 460
Query: 149 RNATRTLSNFC 159
R SN C
Sbjct: 461 SAEPRVASNVC 471
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 89 AVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSML 148
A+P ++L+ PS VR+ A W +G + P + ++ L PLL L E L
Sbjct: 284 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEG-----L 335
Query: 149 RNATRTLSNFC 159
R SN C
Sbjct: 336 SAEPRVASNVC 346
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 20/117 (17%)
Query: 43 QSGVVPRFVEFLMREDYPQLQYEAAWV-------------------LINIASGTSENTNV 83
++ V+PR V+ L++ ++ AA ++I + N
Sbjct: 397 EAAVIPRLVQLLVKAHQDAQRHVAAGTQQPYTDGVRMEEIVEGCTGALHILARDPMNRME 456
Query: 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN 140
+ +P+FV+LL S ++++ A L +A D D + ++GA PL+ L+
Sbjct: 457 IFRLNTIPLFVQLLYSSVENIQRVAAGVLCELAQDK-EAADAIDAEGASAPLMELLH 512
>pdb|3RQZ|A Chain A, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
pdb|3RQZ|B Chain B, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
pdb|3RQZ|C Chain C, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
Length = 246
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 93 FVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEH 142
V L + SD R +W+LG++ G PR R+ V L P ++ + H
Sbjct: 16 LVALEAVLSDAGRVDDIWSLGDIVGYGPRPRECVELVRVLAPNISVIGNH 65
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 89 AVPIFVKLLSSPSDDVREQAVWALGNV 115
A+P ++L+ PS VR+ A W +G +
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRI 435
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 89 AVPIFVKLLSSPSDDVREQAVWALGNV 115
A+P ++L+ PS VR+ A W +G +
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRI 435
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,116,007
Number of Sequences: 62578
Number of extensions: 529923
Number of successful extensions: 2237
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1367
Number of HSP's gapped (non-prelim): 187
length of query: 446
length of database: 14,973,337
effective HSP length: 102
effective length of query: 344
effective length of database: 8,590,381
effective search space: 2955091064
effective search space used: 2955091064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)