Query 043676
Match_columns 446
No_of_seqs 362 out of 2235
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 07:16:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 100.0 7.3E-62 1.6E-66 429.4 46.2 424 4-432 68-492 (514)
2 COG5064 SRP1 Karyopherin (impo 100.0 5E-61 1.1E-65 393.2 33.3 438 3-444 72-513 (526)
3 KOG0166 Karyopherin (importin) 100.0 2.2E-46 4.8E-51 331.4 28.9 370 2-375 109-490 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 4.2E-45 9E-50 299.8 21.5 365 2-372 114-497 (526)
5 PLN03200 cellulose synthase-in 100.0 3E-40 6.6E-45 334.7 44.8 412 2-430 189-768 (2102)
6 PLN03200 cellulose synthase-in 100.0 5.8E-39 1.3E-43 325.4 44.3 416 2-428 404-862 (2102)
7 KOG4224 Armadillo repeat prote 100.0 2.4E-33 5.1E-38 232.8 23.5 363 3-375 86-450 (550)
8 KOG4224 Armadillo repeat prote 100.0 1E-32 2.2E-37 229.1 26.2 364 1-375 125-497 (550)
9 PF05804 KAP: Kinesin-associat 100.0 7.2E-27 1.6E-31 219.7 37.5 379 16-423 263-646 (708)
10 PF05804 KAP: Kinesin-associat 100.0 1E-25 2.2E-30 212.0 33.7 361 2-377 290-655 (708)
11 KOG1048 Neural adherens juncti 99.9 4.1E-21 8.9E-26 176.8 22.2 399 3-429 234-687 (717)
12 KOG0168 Putative ubiquitin fus 99.9 2.8E-19 6E-24 164.4 27.6 389 4-409 169-655 (1051)
13 PF10508 Proteasom_PSMB: Prote 99.8 1.6E-16 3.5E-21 148.8 36.8 398 6-427 42-463 (503)
14 PF10508 Proteasom_PSMB: Prote 99.8 1.2E-16 2.6E-21 149.7 35.1 366 48-426 41-420 (503)
15 KOG4500 Rho/Rac GTPase guanine 99.8 3.1E-16 6.6E-21 134.4 26.8 403 3-421 88-514 (604)
16 KOG2122 Beta-catenin-binding p 99.8 1.3E-16 2.9E-21 154.3 27.1 362 7-375 202-605 (2195)
17 KOG4500 Rho/Rac GTPase guanine 99.8 4.5E-17 9.7E-22 139.4 21.3 378 14-410 54-458 (604)
18 KOG1222 Kinesin associated pro 99.8 6.8E-16 1.5E-20 134.2 27.2 378 15-422 276-659 (791)
19 KOG4199 Uncharacterized conser 99.8 8.7E-16 1.9E-20 127.5 26.6 312 11-329 116-445 (461)
20 KOG1222 Kinesin associated pro 99.8 3.2E-15 7E-20 130.0 29.0 359 3-377 305-669 (791)
21 PRK09687 putative lyase; Provi 99.7 5.9E-16 1.3E-20 133.0 21.7 256 45-368 23-279 (280)
22 KOG4199 Uncharacterized conser 99.7 7.1E-15 1.5E-19 122.2 25.8 318 43-369 102-442 (461)
23 KOG1048 Neural adherens juncti 99.7 9.7E-16 2.1E-20 141.8 22.6 360 1-372 274-685 (717)
24 KOG2122 Beta-catenin-binding p 99.7 3.3E-16 7.1E-21 151.7 20.2 325 2-329 235-602 (2195)
25 KOG2171 Karyopherin (importin) 99.7 4E-14 8.8E-19 136.0 33.0 387 6-418 83-538 (1075)
26 KOG2171 Karyopherin (importin) 99.7 6.4E-14 1.4E-18 134.7 33.8 362 3-374 119-552 (1075)
27 KOG1293 Proteins containing ar 99.7 2.3E-14 5E-19 129.5 28.8 405 8-428 15-535 (678)
28 PRK09687 putative lyase; Provi 99.7 4.2E-15 9.2E-20 127.8 22.4 254 3-325 24-279 (280)
29 PRK13800 putative oxidoreducta 99.7 6.9E-14 1.5E-18 140.7 28.9 275 3-368 622-896 (897)
30 KOG1293 Proteins containing ar 99.6 5.1E-14 1.1E-18 127.3 21.6 371 1-375 50-537 (678)
31 PF04826 Arm_2: Armadillo-like 99.6 1.1E-13 2.3E-18 116.3 22.1 240 169-417 9-253 (254)
32 PF04826 Arm_2: Armadillo-like 99.6 4.9E-14 1.1E-18 118.3 19.8 196 42-244 9-206 (254)
33 PRK13800 putative oxidoreducta 99.6 3.7E-13 8.1E-18 135.5 28.1 277 44-423 620-896 (897)
34 KOG2023 Nuclear transport rece 99.6 4.4E-14 9.6E-19 127.5 18.6 347 8-373 96-507 (885)
35 PF01602 Adaptin_N: Adaptin N 99.6 1.8E-13 3.9E-18 131.9 22.2 362 4-429 81-447 (526)
36 PF01602 Adaptin_N: Adaptin N 99.6 4.1E-13 8.8E-18 129.5 23.2 330 3-376 43-374 (526)
37 cd00256 VATPase_H VATPase_H, r 99.6 9.1E-12 2E-16 111.5 29.1 322 88-425 53-424 (429)
38 PTZ00429 beta-adaptin; Provisi 99.6 3.7E-11 8E-16 116.0 34.6 259 4-289 70-329 (746)
39 KOG2023 Nuclear transport rece 99.5 2E-13 4.4E-18 123.4 15.9 312 88-426 128-505 (885)
40 cd00020 ARM Armadillo/beta-cat 99.5 3.7E-13 7.9E-18 102.1 14.8 119 40-160 2-120 (120)
41 KOG0168 Putative ubiquitin fus 99.5 5.2E-12 1.1E-16 117.4 24.0 342 3-352 212-653 (1051)
42 PTZ00429 beta-adaptin; Provisi 99.5 4.2E-10 9.2E-15 108.8 34.8 293 4-329 34-327 (746)
43 cd00256 VATPase_H VATPase_H, r 99.5 2.8E-11 6.1E-16 108.4 24.6 308 4-328 103-425 (429)
44 cd00020 ARM Armadillo/beta-cat 99.5 9.7E-13 2.1E-17 99.8 13.4 118 210-328 3-120 (120)
45 KOG1241 Karyopherin (importin) 99.5 4.8E-11 1E-15 110.0 24.3 360 7-377 95-483 (859)
46 KOG1241 Karyopherin (importin) 99.4 7.5E-11 1.6E-15 108.8 24.1 327 4-337 174-539 (859)
47 KOG0213 Splicing factor 3b, su 99.4 3.4E-12 7.5E-17 116.9 12.7 344 4-371 718-1065(1172)
48 KOG2759 Vacuolar H+-ATPase V1 99.4 2.2E-10 4.7E-15 99.0 21.0 308 4-328 116-438 (442)
49 KOG2759 Vacuolar H+-ATPase V1 99.3 4.9E-09 1.1E-13 90.8 26.9 322 89-426 66-438 (442)
50 KOG0946 ER-Golgi vesicle-tethe 99.3 1.4E-08 3.1E-13 94.4 31.0 327 45-377 22-405 (970)
51 KOG1059 Vesicle coat complex A 99.3 1.3E-08 2.8E-13 93.8 27.1 334 5-376 147-495 (877)
52 KOG2160 Armadillo/beta-catenin 99.3 2.2E-09 4.7E-14 91.8 20.7 190 184-375 95-286 (342)
53 KOG2160 Armadillo/beta-catenin 99.3 9.8E-10 2.1E-14 93.8 18.4 186 13-201 94-282 (342)
54 COG5181 HSH155 U2 snRNP splice 99.3 9.5E-12 2.1E-16 111.9 6.4 265 88-373 604-872 (975)
55 KOG1062 Vesicle coat complex A 99.2 1.4E-08 3E-13 94.9 26.2 364 6-425 111-494 (866)
56 KOG0946 ER-Golgi vesicle-tethe 99.2 8.3E-09 1.8E-13 96.0 21.1 300 131-442 23-362 (970)
57 KOG1789 Endocytosis protein RM 99.2 2.4E-07 5.3E-12 89.2 30.9 329 18-353 1741-2141(2235)
58 KOG1061 Vesicle coat complex A 99.2 1.7E-08 3.7E-13 94.2 22.6 377 4-430 51-457 (734)
59 PF03224 V-ATPase_H_N: V-ATPas 99.1 5.6E-09 1.2E-13 92.6 17.9 227 132-361 57-304 (312)
60 PF03224 V-ATPase_H_N: V-ATPas 99.1 4.5E-09 9.7E-14 93.2 16.6 230 175-421 58-309 (312)
61 COG5215 KAP95 Karyopherin (imp 99.1 1.2E-07 2.7E-12 85.3 23.3 353 7-376 99-484 (858)
62 KOG0212 Uncharacterized conser 99.0 6.2E-08 1.3E-12 87.0 20.5 355 3-373 85-446 (675)
63 KOG1824 TATA-binding protein-i 99.0 2.4E-07 5.1E-12 88.3 24.9 314 6-328 9-464 (1233)
64 KOG1062 Vesicle coat complex A 99.0 3.8E-07 8.3E-12 85.5 26.0 287 4-328 144-451 (866)
65 KOG4413 26S proteasome regulat 99.0 2.2E-06 4.7E-11 72.3 27.8 363 5-371 85-484 (524)
66 KOG0212 Uncharacterized conser 99.0 1.4E-08 3E-13 91.0 15.8 319 42-375 81-410 (675)
67 KOG1242 Protein containing ada 99.0 1.1E-06 2.5E-11 80.5 27.7 347 45-428 96-446 (569)
68 KOG1242 Protein containing ada 99.0 1.5E-06 3.2E-11 79.8 27.7 346 4-376 98-449 (569)
69 KOG1059 Vesicle coat complex A 99.0 8.1E-07 1.8E-11 82.3 25.8 257 45-331 144-404 (877)
70 KOG0213 Splicing factor 3b, su 99.0 1.5E-07 3.3E-12 87.2 21.1 329 48-425 802-1141(1172)
71 COG5215 KAP95 Karyopherin (imp 99.0 1.4E-07 3E-12 85.0 20.0 309 14-331 190-532 (858)
72 KOG1061 Vesicle coat complex A 99.0 6.6E-08 1.4E-12 90.4 18.4 343 2-376 86-458 (734)
73 COG5181 HSH155 U2 snRNP splice 98.9 5.2E-07 1.1E-11 82.2 22.7 332 46-423 605-944 (975)
74 KOG3678 SARM protein (with ste 98.9 9.4E-08 2E-12 84.1 16.6 266 2-284 180-450 (832)
75 KOG0211 Protein phosphatase 2A 98.9 8.5E-07 1.9E-11 85.5 23.2 375 9-422 244-660 (759)
76 KOG1517 Guanine nucleotide bin 98.9 2.5E-07 5.5E-12 89.0 19.2 273 14-297 448-743 (1387)
77 KOG3678 SARM protein (with ste 98.9 3E-07 6.4E-12 81.0 18.0 272 38-326 173-450 (832)
78 KOG1060 Vesicle coat complex A 98.8 3.3E-06 7.2E-11 79.2 24.6 282 54-376 152-463 (968)
79 PF05536 Neurochondrin: Neuroc 98.8 9.8E-06 2.1E-10 76.9 28.5 194 3-200 6-212 (543)
80 KOG1058 Vesicle coat complex C 98.8 1E-06 2.2E-11 82.1 20.6 316 54-429 108-466 (948)
81 KOG1060 Vesicle coat complex A 98.8 6.2E-06 1.3E-10 77.5 25.4 367 5-428 38-460 (968)
82 KOG1789 Endocytosis protein RM 98.8 7.6E-06 1.7E-10 79.3 25.3 303 1-311 1770-2142(2235)
83 KOG1517 Guanine nucleotide bin 98.8 5.2E-07 1.1E-11 86.9 17.1 246 3-253 473-742 (1387)
84 PF14664 RICTOR_N: Rapamycin-i 98.7 9.2E-06 2E-10 73.0 23.5 334 70-425 7-363 (371)
85 COG5369 Uncharacterized conser 98.7 1.6E-07 3.5E-12 83.9 12.1 307 106-424 407-739 (743)
86 KOG2973 Uncharacterized conser 98.7 8.1E-06 1.7E-10 68.4 21.1 273 4-286 5-315 (353)
87 TIGR02270 conserved hypothetic 98.7 5.8E-06 1.3E-10 75.1 21.9 240 4-328 56-296 (410)
88 KOG1077 Vesicle coat complex A 98.7 8.9E-06 1.9E-10 75.5 22.3 301 4-328 113-433 (938)
89 KOG1824 TATA-binding protein-i 98.7 1.8E-05 3.9E-10 76.0 24.4 284 59-376 832-1138(1233)
90 PF12460 MMS19_C: RNAPII trans 98.7 9.5E-05 2.1E-09 68.6 29.1 350 4-375 1-398 (415)
91 KOG4646 Uncharacterized conser 98.7 4.5E-07 9.7E-12 65.8 10.5 153 257-425 17-169 (173)
92 COG5369 Uncharacterized conser 98.7 2.9E-07 6.3E-12 82.4 11.4 285 39-326 425-739 (743)
93 KOG4413 26S proteasome regulat 98.7 1.2E-05 2.5E-10 68.0 20.1 318 2-325 128-481 (524)
94 KOG2973 Uncharacterized conser 98.6 4.2E-05 9E-10 64.2 22.8 270 133-426 6-315 (353)
95 KOG0915 Uncharacterized conser 98.6 1E-05 2.2E-10 81.4 21.2 340 6-361 822-1191(1702)
96 KOG0211 Protein phosphatase 2A 98.6 2E-05 4.4E-10 76.3 22.3 383 4-427 199-626 (759)
97 KOG4646 Uncharacterized conser 98.6 1.5E-06 3.3E-11 63.1 10.5 115 45-162 16-130 (173)
98 TIGR02270 conserved hypothetic 98.6 3.4E-05 7.4E-10 70.3 21.9 244 45-372 54-297 (410)
99 PF14664 RICTOR_N: Rapamycin-i 98.5 9.7E-06 2.1E-10 72.9 17.8 312 7-328 30-364 (371)
100 COG1413 FOG: HEAT repeat [Ener 98.5 5.1E-05 1.1E-09 68.7 22.2 250 3-329 44-305 (335)
101 KOG1077 Vesicle coat complex A 98.5 0.00025 5.3E-09 66.3 25.9 302 90-425 113-436 (938)
102 COG5231 VMA13 Vacuolar H+-ATPa 98.5 5.4E-05 1.2E-09 63.8 18.9 239 174-426 151-428 (432)
103 COG5231 VMA13 Vacuolar H+-ATPa 98.4 2.2E-05 4.8E-10 66.0 15.8 262 52-328 156-428 (432)
104 KOG0915 Uncharacterized conser 98.4 0.00012 2.7E-09 74.0 23.0 341 16-371 971-1344(1702)
105 COG5240 SEC21 Vesicle coat com 98.4 0.00016 3.5E-09 66.0 21.5 350 14-425 202-554 (898)
106 KOG2259 Uncharacterized conser 98.4 2.9E-05 6.4E-10 71.7 16.9 219 135-372 203-440 (823)
107 COG1413 FOG: HEAT repeat [Ener 98.4 8.8E-05 1.9E-09 67.1 20.5 248 45-369 43-302 (335)
108 KOG2259 Uncharacterized conser 98.4 1.3E-05 2.9E-10 73.9 14.4 254 92-368 202-472 (823)
109 COG5096 Vesicle coat complex, 98.4 0.0013 2.9E-08 63.6 28.1 140 4-161 57-196 (757)
110 KOG1240 Protein kinase contain 98.3 3.3E-05 7.1E-10 76.2 17.2 259 15-286 436-725 (1431)
111 PF00514 Arm: Armadillo/beta-c 98.3 1.2E-06 2.5E-11 51.2 4.7 40 77-116 1-40 (41)
112 KOG1240 Protein kinase contain 98.3 8.4E-05 1.8E-09 73.5 19.2 295 90-426 424-725 (1431)
113 PF10165 Ric8: Guanine nucleot 98.3 0.00024 5.2E-09 66.1 21.6 255 35-290 12-341 (446)
114 PF00514 Arm: Armadillo/beta-c 98.2 2.5E-06 5.4E-11 49.8 4.4 40 288-327 1-40 (41)
115 PF12348 CLASP_N: CLASP N term 98.2 2.8E-05 6.1E-10 66.0 12.6 187 182-376 17-211 (228)
116 COG5240 SEC21 Vesicle coat com 98.2 0.00021 4.5E-09 65.3 17.6 284 9-328 271-555 (898)
117 KOG2734 Uncharacterized conser 98.2 0.0015 3.2E-08 58.0 22.0 229 35-266 115-371 (536)
118 PF05536 Neurochondrin: Neuroc 98.2 0.0002 4.3E-09 68.2 18.4 235 46-285 6-260 (543)
119 PF12348 CLASP_N: CLASP N term 98.2 5.1E-05 1.1E-09 64.4 13.0 189 12-208 17-213 (228)
120 PF12755 Vac14_Fab1_bd: Vacuol 98.2 1.4E-05 2.9E-10 56.5 7.8 94 274-371 3-96 (97)
121 PF13646 HEAT_2: HEAT repeats; 98.2 8.6E-06 1.9E-10 57.4 6.8 87 47-156 1-88 (88)
122 KOG1058 Vesicle coat complex C 98.1 0.00032 7E-09 66.1 18.0 326 6-374 103-466 (948)
123 PF13646 HEAT_2: HEAT repeats; 98.1 7.6E-06 1.6E-10 57.7 5.9 86 4-113 1-88 (88)
124 KOG2734 Uncharacterized conser 98.1 0.0005 1.1E-08 60.8 17.9 239 153-405 106-369 (536)
125 KOG1991 Nuclear transport rece 98.1 0.0095 2.1E-07 58.5 26.9 343 20-375 390-761 (1010)
126 KOG1943 Beta-tubulin folding c 98.0 0.0071 1.5E-07 59.9 25.7 260 45-328 341-611 (1133)
127 PF13513 HEAT_EZ: HEAT-like re 98.0 1E-05 2.2E-10 50.9 4.5 55 271-326 1-55 (55)
128 KOG1248 Uncharacterized conser 98.0 0.0085 1.8E-07 60.0 25.0 238 134-376 657-903 (1176)
129 KOG1078 Vesicle coat complex C 98.0 0.0012 2.6E-08 62.8 18.3 141 171-327 390-531 (865)
130 KOG1991 Nuclear transport rece 97.9 0.0047 1E-07 60.5 22.6 348 15-376 431-805 (1010)
131 PF09759 Atx10homo_assoc: Spin 97.9 8.4E-05 1.8E-09 52.4 8.3 67 62-128 2-70 (102)
132 COG5096 Vesicle coat complex, 97.9 0.0052 1.1E-07 59.7 22.8 168 54-244 28-196 (757)
133 KOG2062 26S proteasome regulat 97.9 0.00051 1.1E-08 64.7 14.8 136 172-330 519-655 (929)
134 KOG2274 Predicted importin 9 [ 97.8 0.035 7.5E-07 54.2 26.1 225 99-331 461-692 (1005)
135 KOG4535 HEAT and armadillo rep 97.8 0.00016 3.4E-09 64.6 10.0 300 61-367 270-599 (728)
136 KOG2274 Predicted importin 9 [ 97.8 0.0071 1.5E-07 58.7 21.3 305 13-330 461-782 (1005)
137 KOG1078 Vesicle coat complex C 97.8 0.0011 2.3E-08 63.1 15.7 140 214-370 391-531 (865)
138 PF12755 Vac14_Fab1_bd: Vacuol 97.8 0.00067 1.5E-08 48.0 11.0 94 315-425 2-95 (97)
139 PF12460 MMS19_C: RNAPII trans 97.8 0.014 3E-07 54.4 22.6 190 131-330 190-396 (415)
140 PF13513 HEAT_EZ: HEAT-like re 97.8 4.6E-05 1E-09 47.9 4.5 55 186-241 1-55 (55)
141 KOG1943 Beta-tubulin folding c 97.8 0.053 1.2E-06 54.1 28.4 341 3-372 342-706 (1133)
142 KOG0567 HEAT repeat-containing 97.8 0.0041 8.8E-08 51.5 16.4 255 48-369 6-278 (289)
143 KOG4535 HEAT and armadillo rep 97.7 0.0032 6.9E-08 56.6 16.4 356 14-374 119-562 (728)
144 PF05918 API5: Apoptosis inhib 97.7 0.0092 2E-07 56.1 19.8 297 48-375 26-349 (556)
145 PF10165 Ric8: Guanine nucleot 97.7 0.011 2.3E-07 55.3 20.1 228 12-243 42-337 (446)
146 smart00185 ARM Armadillo/beta- 97.7 0.00015 3.1E-09 42.3 5.2 39 78-116 2-40 (41)
147 KOG1248 Uncharacterized conser 97.7 0.013 2.8E-07 58.8 20.9 242 51-297 659-910 (1176)
148 PF08569 Mo25: Mo25-like; Int 97.6 0.041 8.8E-07 49.0 22.6 202 171-376 75-288 (335)
149 KOG0567 HEAT repeat-containing 97.6 0.024 5.2E-07 47.2 18.6 253 5-326 6-278 (289)
150 PF12717 Cnd1: non-SMC mitotic 97.6 0.0034 7.5E-08 50.7 14.0 93 185-287 1-93 (178)
151 PF11841 DUF3361: Domain of un 97.6 0.0034 7.4E-08 48.3 12.7 131 208-339 5-142 (160)
152 PF12717 Cnd1: non-SMC mitotic 97.6 0.003 6.5E-08 51.0 13.3 92 60-162 2-94 (178)
153 PF08569 Mo25: Mo25-like; Int 97.5 0.019 4.2E-07 51.0 18.7 203 208-425 70-282 (335)
154 KOG1967 DNA repair/transcripti 97.5 0.0013 2.8E-08 63.7 11.9 152 130-284 867-1022(1030)
155 KOG1020 Sister chromatid cohes 97.5 0.17 3.7E-06 52.6 29.4 143 4-162 818-962 (1692)
156 KOG4653 Uncharacterized conser 97.5 0.0041 8.8E-08 60.0 14.2 227 47-284 729-962 (982)
157 PF11841 DUF3361: Domain of un 97.5 0.0073 1.6E-07 46.5 13.0 126 123-248 4-136 (160)
158 smart00185 ARM Armadillo/beta- 97.5 0.00036 7.8E-09 40.6 4.9 38 290-327 3-40 (41)
159 KOG0414 Chromosome condensatio 97.4 0.0056 1.2E-07 61.2 14.9 163 152-330 898-1066(1251)
160 PF09759 Atx10homo_assoc: Spin 97.4 0.0019 4.1E-08 45.7 8.2 68 230-297 2-70 (102)
161 KOG2032 Uncharacterized conser 97.3 0.045 9.8E-07 49.8 18.3 260 97-371 267-531 (533)
162 KOG2025 Chromosome condensatio 97.3 0.041 8.9E-07 52.3 18.7 107 169-282 82-189 (892)
163 KOG2032 Uncharacterized conser 97.3 0.072 1.6E-06 48.5 19.5 151 171-325 257-412 (533)
164 KOG4151 Myosin assembly protei 97.3 0.004 8.8E-08 59.6 12.5 213 2-221 504-719 (748)
165 KOG4653 Uncharacterized conser 97.3 0.022 4.7E-07 55.3 17.2 220 141-371 737-964 (982)
166 PF11698 V-ATPase_H_C: V-ATPas 97.3 0.0016 3.4E-08 47.3 7.4 70 343-425 44-114 (119)
167 KOG4151 Myosin assembly protei 97.3 0.019 4.2E-07 55.2 16.3 220 123-350 497-720 (748)
168 PF04078 Rcd1: Cell differenti 97.3 0.019 4E-07 48.1 14.3 196 227-429 8-221 (262)
169 PF05004 IFRD: Interferon-rela 97.3 0.076 1.7E-06 47.0 19.1 197 174-375 45-261 (309)
170 KOG1020 Sister chromatid cohes 97.3 0.33 7.2E-06 50.6 26.6 143 45-202 816-961 (1692)
171 PF05918 API5: Apoptosis inhib 97.2 0.014 3E-07 54.9 14.7 252 92-373 27-299 (556)
172 KOG3036 Protein involved in ce 97.2 0.039 8.4E-07 45.4 15.0 144 17-162 94-249 (293)
173 KOG1967 DNA repair/transcripti 97.1 0.0039 8.5E-08 60.6 10.4 190 133-326 818-1022(1030)
174 PF12719 Cnd3: Nuclear condens 97.1 0.079 1.7E-06 46.9 18.0 241 171-427 25-286 (298)
175 KOG2062 26S proteasome regulat 97.1 0.19 4E-06 48.4 20.4 162 215-414 520-682 (929)
176 PF05004 IFRD: Interferon-rela 97.1 0.04 8.6E-07 48.7 15.6 191 134-329 47-258 (309)
177 COG5656 SXM1 Importin, protein 97.1 0.21 4.6E-06 48.1 20.6 299 20-331 388-714 (970)
178 KOG0414 Chromosome condensatio 97.0 0.0088 1.9E-07 59.9 11.6 160 89-268 920-1083(1251)
179 PF04078 Rcd1: Cell differenti 97.0 0.037 8E-07 46.4 13.6 142 19-162 67-220 (262)
180 PF06025 DUF913: Domain of Unk 97.0 0.027 5.9E-07 51.2 14.1 221 65-297 3-243 (379)
181 PF11698 V-ATPase_H_C: V-ATPas 96.9 0.0019 4E-08 47.0 4.9 72 257-328 44-115 (119)
182 PF12719 Cnd3: Nuclear condens 96.9 0.05 1.1E-06 48.2 14.9 172 45-227 26-210 (298)
183 KOG2956 CLIP-associating prote 96.9 0.087 1.9E-06 47.7 15.6 185 49-243 290-477 (516)
184 KOG1243 Protein kinase [Genera 96.8 0.1 2.3E-06 49.7 16.7 257 98-376 264-520 (690)
185 PF13764 E3_UbLigase_R4: E3 ub 96.8 0.51 1.1E-05 47.2 22.1 180 86-268 115-331 (802)
186 KOG2956 CLIP-associating prote 96.8 0.1 2.3E-06 47.2 15.8 174 145-329 301-478 (516)
187 KOG3036 Protein involved in ce 96.7 0.3 6.4E-06 40.4 17.5 142 273-424 94-245 (293)
188 PF11701 UNC45-central: Myosin 96.5 0.018 3.9E-07 45.2 8.3 143 218-368 7-156 (157)
189 KOG3665 ZYG-1-like serine/thre 96.5 0.42 9E-06 47.5 19.1 194 111-323 494-692 (699)
190 PRK14707 hypothetical protein; 96.4 1.9 4.1E-05 47.2 28.0 358 47-425 165-529 (2710)
191 PF14500 MMS19_N: Dos2-interac 96.4 0.53 1.2E-05 40.5 17.6 226 91-333 2-242 (262)
192 PF08045 CDC14: Cell division 96.4 0.1 2.3E-06 44.0 12.3 101 273-374 107-210 (257)
193 PF08045 CDC14: Cell division 96.3 0.071 1.5E-06 45.0 10.8 101 16-117 105-207 (257)
194 COG5656 SXM1 Importin, protein 96.3 1.2 2.6E-05 43.3 24.5 275 2-286 408-711 (970)
195 PF11864 DUF3384: Domain of un 96.3 1.1 2.4E-05 42.6 29.2 286 16-327 4-329 (464)
196 COG5098 Chromosome condensatio 96.3 0.28 6.1E-06 46.9 15.3 179 171-372 891-1077(1128)
197 KOG2025 Chromosome condensatio 96.2 0.28 6.1E-06 47.0 15.2 105 45-156 85-189 (892)
198 PRK14707 hypothetical protein; 96.2 2.5 5.4E-05 46.4 27.8 395 5-423 166-568 (2710)
199 COG5116 RPN2 26S proteasome re 96.2 0.035 7.5E-07 51.4 9.2 135 176-333 520-655 (926)
200 COG5098 Chromosome condensatio 96.2 0.36 7.8E-06 46.2 15.8 156 46-222 893-1053(1128)
201 PF06025 DUF913: Domain of Unk 96.2 0.3 6.6E-06 44.6 15.2 150 24-174 82-246 (379)
202 KOG1820 Microtubule-associated 96.2 0.14 3.1E-06 50.9 14.0 192 175-376 256-448 (815)
203 PF11865 DUF3385: Domain of un 96.2 0.056 1.2E-06 42.6 9.2 147 45-200 10-156 (160)
204 PF02985 HEAT: HEAT repeat; I 96.2 0.0061 1.3E-07 32.7 2.7 29 46-75 1-29 (31)
205 PF02985 HEAT: HEAT repeat; I 96.1 0.012 2.6E-07 31.6 3.7 30 173-202 1-30 (31)
206 PF07814 WAPL: Wings apart-lik 96.1 0.48 1E-05 43.2 16.1 274 47-330 23-357 (361)
207 KOG1566 Conserved protein Mo25 96.1 0.82 1.8E-05 39.5 17.1 203 124-330 73-288 (342)
208 PF11701 UNC45-central: Myosin 96.1 0.098 2.1E-06 41.1 10.0 137 183-326 16-157 (157)
209 PF12530 DUF3730: Protein of u 95.9 0.89 1.9E-05 38.6 17.1 141 47-202 2-152 (234)
210 PF13251 DUF4042: Domain of un 95.9 0.29 6.4E-06 39.2 12.0 142 62-203 2-176 (182)
211 PF07814 WAPL: Wings apart-lik 95.8 0.91 2E-05 41.4 16.5 275 90-374 23-358 (361)
212 PF14668 RICTOR_V: Rapamycin-i 95.8 0.13 2.8E-06 34.0 8.1 66 274-342 4-70 (73)
213 PF11707 Npa1: Ribosome 60S bi 95.8 1.2 2.7E-05 40.0 17.1 160 216-375 58-241 (330)
214 KOG1820 Microtubule-associated 95.8 0.31 6.7E-06 48.7 14.1 187 91-286 256-443 (815)
215 KOG1243 Protein kinase [Genera 95.7 0.7 1.5E-05 44.5 15.3 227 39-285 287-514 (690)
216 PF06371 Drf_GBD: Diaphanous G 95.6 0.079 1.7E-06 43.3 8.1 108 6-116 70-186 (187)
217 COG5218 YCG1 Chromosome conden 95.5 1.9 4.2E-05 40.7 17.2 108 167-280 86-193 (885)
218 KOG0413 Uncharacterized conser 95.5 3.1 6.6E-05 41.9 21.9 128 230-373 947-1075(1529)
219 PLN03076 ARF guanine nucleotid 95.5 3.1 6.8E-05 45.9 21.3 266 99-373 1148-1491(1780)
220 KOG2137 Protein kinase [Signal 95.5 0.84 1.8E-05 44.1 15.2 234 102-355 287-521 (700)
221 KOG2933 Uncharacterized conser 95.5 0.14 3.1E-06 43.8 9.2 140 216-370 90-233 (334)
222 PF14668 RICTOR_V: Rapamycin-i 95.4 0.11 2.3E-06 34.4 6.6 67 19-88 4-70 (73)
223 COG5116 RPN2 26S proteasome re 95.4 0.32 6.9E-06 45.4 11.6 153 7-185 521-675 (926)
224 KOG2999 Regulator of Rac1, req 95.3 0.8 1.7E-05 42.7 13.9 156 5-164 86-246 (713)
225 PF11865 DUF3385: Domain of un 95.1 0.45 9.8E-06 37.5 10.6 147 169-327 7-156 (160)
226 KOG1566 Conserved protein Mo25 95.1 2.1 4.5E-05 37.1 17.5 201 171-375 78-290 (342)
227 KOG1949 Uncharacterized conser 95.0 0.98 2.1E-05 43.5 13.8 229 128-368 127-367 (1005)
228 PF04063 DUF383: Domain of unk 95.0 0.34 7.4E-06 39.3 9.7 114 223-340 4-142 (192)
229 PF10363 DUF2435: Protein of u 94.9 0.21 4.5E-06 35.0 7.2 84 216-310 5-88 (92)
230 KOG2137 Protein kinase [Signal 94.9 2.6 5.7E-05 40.9 16.5 138 168-314 385-523 (700)
231 PF14500 MMS19_N: Dos2-interac 94.8 2.4 5.3E-05 36.6 17.2 225 6-245 3-239 (262)
232 PF01603 B56: Protein phosphat 94.7 2.5 5.5E-05 39.3 16.1 233 84-329 129-371 (409)
233 PF13251 DUF4042: Domain of un 94.7 0.9 1.9E-05 36.5 11.3 144 230-374 2-177 (182)
234 PF13764 E3_UbLigase_R4: E3 ub 94.7 5.5 0.00012 40.2 21.4 241 171-428 116-408 (802)
235 PF12830 Nipped-B_C: Sister ch 94.7 1.8 3.8E-05 35.3 13.3 146 4-162 10-169 (187)
236 KOG3665 ZYG-1-like serine/thre 94.7 1.1 2.3E-05 44.7 14.1 195 69-281 494-692 (699)
237 KOG1949 Uncharacterized conser 94.6 0.74 1.6E-05 44.3 12.1 150 47-200 176-330 (1005)
238 COG5218 YCG1 Chromosome conden 94.6 0.54 1.2E-05 44.2 11.0 112 199-321 78-192 (885)
239 PF01603 B56: Protein phosphat 94.6 1.2 2.6E-05 41.4 13.6 228 4-250 135-377 (409)
240 PF04063 DUF383: Domain of unk 94.6 0.44 9.6E-06 38.7 9.4 82 45-128 52-142 (192)
241 PF01347 Vitellogenin_N: Lipop 94.5 2 4.4E-05 42.7 16.1 198 46-278 396-614 (618)
242 cd03567 VHS_GGA VHS domain fam 94.5 0.39 8.5E-06 36.6 8.5 75 300-374 39-119 (139)
243 PF10363 DUF2435: Protein of u 94.3 0.33 7.1E-06 34.0 7.2 73 301-376 5-77 (92)
244 PF11864 DUF3384: Domain of un 94.2 5.2 0.00011 38.1 25.3 252 15-285 42-329 (464)
245 PF12530 DUF3730: Protein of u 94.1 3.2 6.9E-05 35.2 18.2 203 133-357 3-218 (234)
246 PF08167 RIX1: rRNA processing 94.1 0.55 1.2E-05 37.3 8.9 114 214-329 25-144 (165)
247 PF08506 Cse1: Cse1; InterPro 94.0 4.7 0.0001 36.9 18.0 148 209-366 205-370 (370)
248 cd03568 VHS_STAM VHS domain fa 93.9 0.3 6.5E-06 37.6 6.9 75 343-429 38-113 (144)
249 cd03568 VHS_STAM VHS domain fa 93.9 0.33 7.2E-06 37.4 7.2 74 300-373 38-112 (144)
250 cd03569 VHS_Hrs_Vps27p VHS dom 93.9 0.64 1.4E-05 35.7 8.7 75 300-374 42-117 (142)
251 KOG0413 Uncharacterized conser 93.8 8.4 0.00018 39.1 19.8 145 16-180 945-1091(1529)
252 PF08506 Cse1: Cse1; InterPro 93.8 0.39 8.4E-06 43.7 8.4 149 124-281 204-370 (370)
253 PF01347 Vitellogenin_N: Lipop 93.7 5.1 0.00011 39.9 17.1 161 132-321 433-615 (618)
254 KOG2611 Neurochondrin/leucine- 93.6 5.9 0.00013 36.6 16.6 132 50-184 16-164 (698)
255 PF12231 Rif1_N: Rap1-interact 93.6 5.8 0.00013 36.5 20.0 307 11-327 2-351 (372)
256 KOG2611 Neurochondrin/leucine- 93.6 6.1 0.00013 36.6 18.0 129 7-139 16-161 (698)
257 KOG1832 HIV-1 Vpr-binding prot 93.5 2.2 4.7E-05 42.4 13.1 315 14-338 365-781 (1516)
258 KOG2933 Uncharacterized conser 93.5 0.72 1.6E-05 39.7 8.9 146 171-329 87-235 (334)
259 PLN03076 ARF guanine nucleotid 93.4 16 0.00034 40.9 25.5 265 13-286 1148-1489(1780)
260 PF12231 Rif1_N: Rap1-interact 93.3 6.6 0.00014 36.1 20.2 266 101-371 59-352 (372)
261 KOG1992 Nuclear export recepto 93.3 4.1 8.9E-05 40.3 14.5 163 165-328 491-668 (960)
262 cd03569 VHS_Hrs_Vps27p VHS dom 93.2 0.49 1.1E-05 36.4 7.1 75 343-429 42-117 (142)
263 KOG1848 Uncharacterized conser 93.2 3.3 7.2E-05 43.4 14.3 241 100-370 854-1131(1610)
264 PF06371 Drf_GBD: Diaphanous G 93.1 0.43 9.2E-06 38.9 7.1 109 47-159 68-186 (187)
265 cd03572 ENTH_epsin_related ENT 92.8 2.8 6.1E-05 31.1 10.1 103 308-428 10-121 (122)
266 PF08167 RIX1: rRNA processing 92.8 1.7 3.7E-05 34.5 9.8 113 89-205 26-147 (165)
267 KOG1993 Nuclear transport rece 92.8 11 0.00024 37.3 23.4 308 16-335 501-818 (978)
268 cd03567 VHS_GGA VHS domain fam 92.5 0.98 2.1E-05 34.5 7.7 74 343-428 39-118 (139)
269 cd03561 VHS VHS domain family; 92.4 3.6 7.8E-05 31.3 10.8 74 343-428 38-114 (133)
270 cd03561 VHS VHS domain family; 92.4 1.3 2.8E-05 33.7 8.3 76 300-375 38-116 (133)
271 KOG2005 26S proteasome regulat 92.2 12 0.00026 36.4 16.1 285 3-331 416-707 (878)
272 COG5209 RCD1 Uncharacterized p 91.9 2 4.3E-05 35.2 9.0 98 277-375 120-222 (315)
273 KOG0891 DNA-dependent protein 91.6 3.5 7.6E-05 46.6 13.3 267 11-287 490-764 (2341)
274 KOG1788 Uncharacterized conser 91.5 19 0.00041 37.2 19.1 399 11-429 476-940 (2799)
275 KOG1848 Uncharacterized conser 91.4 12 0.00025 39.7 15.6 264 143-425 854-1131(1610)
276 KOG1832 HIV-1 Vpr-binding prot 91.3 18 0.00039 36.5 17.0 354 64-426 327-773 (1516)
277 KOG1525 Sister chromatid cohes 91.0 25 0.00054 37.7 28.4 114 255-372 258-406 (1266)
278 PF11707 Npa1: Ribosome 60S bi 91.0 12 0.00025 33.9 21.7 167 251-428 52-239 (330)
279 PF12031 DUF3518: Domain of un 90.8 0.7 1.5E-05 38.4 5.6 83 229-312 139-229 (257)
280 smart00288 VHS Domain present 90.7 1.2 2.6E-05 33.9 6.6 74 343-428 38-113 (133)
281 PF10521 DUF2454: Protein of u 90.6 2.9 6.3E-05 36.7 9.8 135 45-184 119-277 (282)
282 PF14225 MOR2-PAG1_C: Cell mor 90.3 11 0.00024 32.5 16.8 213 8-242 13-253 (262)
283 PF04388 Hamartin: Hamartin pr 89.8 8.7 0.00019 38.4 13.3 157 3-181 5-161 (668)
284 PF14726 RTTN_N: Rotatin, an a 89.8 3.5 7.6E-05 29.2 7.7 69 341-423 29-97 (98)
285 smart00288 VHS Domain present 89.8 0.99 2.1E-05 34.3 5.5 73 3-75 38-111 (133)
286 COG5209 RCD1 Uncharacterized p 89.7 2.9 6.3E-05 34.3 8.1 141 19-161 117-269 (315)
287 KOG1525 Sister chromatid cohes 89.7 33 0.00071 36.9 20.5 125 299-426 259-405 (1266)
288 PF00790 VHS: VHS domain; Int 89.6 2.7 5.9E-05 32.3 7.8 73 343-427 43-119 (140)
289 PF00790 VHS: VHS domain; Int 89.0 1.4 3E-05 33.9 5.9 74 300-373 43-120 (140)
290 PF08324 PUL: PUL domain; Int 89.0 4.7 0.0001 35.1 10.0 158 47-207 65-237 (268)
291 PF10274 ParcG: Parkin co-regu 89.0 8.4 0.00018 30.9 10.2 71 256-328 38-109 (183)
292 smart00638 LPD_N Lipoprotein N 88.9 25 0.00055 34.7 20.3 134 132-284 395-543 (574)
293 PF13001 Ecm29: Proteasome sta 88.9 12 0.00026 36.0 13.2 218 142-373 248-490 (501)
294 PF12074 DUF3554: Domain of un 88.8 4.4 9.6E-05 36.7 10.0 209 42-267 19-255 (339)
295 KOG1992 Nuclear export recepto 88.8 28 0.0006 34.9 19.5 161 209-375 356-531 (960)
296 PF10521 DUF2454: Protein of u 88.4 6 0.00013 34.7 10.1 137 214-353 119-276 (282)
297 cd03565 VHS_Tom1 VHS domain fa 88.3 8.7 0.00019 29.5 9.7 74 344-429 40-118 (141)
298 PF12830 Nipped-B_C: Sister ch 88.3 13 0.00027 30.4 13.5 71 46-122 9-79 (187)
299 PF12031 DUF3518: Domain of un 88.1 1.7 3.6E-05 36.2 5.9 79 61-140 139-226 (257)
300 KOG2999 Regulator of Rac1, req 87.6 26 0.00057 33.3 22.7 157 91-248 86-247 (713)
301 KOG1822 Uncharacterized conser 87.6 40 0.00086 37.4 16.5 213 47-268 878-1110(2067)
302 KOG4464 Signaling protein RIC- 87.4 23 0.00049 32.3 17.6 93 47-140 47-149 (532)
303 smart00638 LPD_N Lipoprotein N 87.1 33 0.00071 33.9 19.0 136 171-326 392-543 (574)
304 cd00197 VHS_ENTH_ANTH VHS, ENT 87.1 10 0.00022 27.9 9.3 71 343-425 38-114 (115)
305 PF14726 RTTN_N: Rotatin, an a 87.1 7.5 0.00016 27.6 7.9 93 17-112 2-95 (98)
306 cd03572 ENTH_epsin_related ENT 86.6 10 0.00022 28.2 8.7 72 300-371 39-119 (122)
307 cd03565 VHS_Tom1 VHS domain fa 85.9 14 0.0003 28.4 10.0 74 300-373 39-117 (141)
308 PF03378 CAS_CSE1: CAS/CSE pro 85.7 32 0.0007 32.4 15.3 274 46-329 27-325 (435)
309 KOG4464 Signaling protein RIC- 84.9 29 0.00062 31.7 12.1 153 134-286 49-231 (532)
310 KOG1993 Nuclear transport rece 84.8 46 0.00099 33.4 29.4 311 39-369 482-810 (978)
311 PF03378 CAS_CSE1: CAS/CSE pro 84.5 12 0.00025 35.2 10.3 102 144-246 43-149 (435)
312 KOG0891 DNA-dependent protein 84.5 45 0.00098 38.5 15.9 251 105-371 461-719 (2341)
313 PF08324 PUL: PUL domain; Int 84.1 4.3 9.4E-05 35.3 7.1 109 14-125 122-239 (268)
314 PF04869 Uso1_p115_head: Uso1 84.0 31 0.00067 30.8 12.9 168 46-243 35-231 (312)
315 KOG2199 Signal transducing ada 83.5 13 0.00029 33.4 9.4 78 299-376 45-123 (462)
316 PF12726 SEN1_N: SEN1 N termin 82.3 38 0.00083 34.6 13.7 141 7-162 446-587 (727)
317 KOG0392 SNF2 family DNA-depend 82.1 19 0.00041 37.9 11.0 235 4-246 79-328 (1549)
318 KOG1410 Nuclear transport rece 81.8 56 0.0012 32.2 19.8 290 4-309 7-355 (1082)
319 KOG0889 Histone acetyltransfer 81.0 1.1E+02 0.0024 36.8 17.0 184 168-353 1122-1330(3550)
320 cd00197 VHS_ENTH_ANTH VHS, ENT 81.0 11 0.00025 27.6 7.3 70 300-369 38-113 (115)
321 PF13001 Ecm29: Proteasome sta 80.9 22 0.00047 34.3 10.9 149 45-202 272-444 (501)
322 KOG1822 Uncharacterized conser 80.7 1E+02 0.0022 34.5 17.5 230 90-328 878-1127(2067)
323 PF12726 SEN1_N: SEN1 N termin 80.6 72 0.0016 32.6 26.7 113 300-427 442-554 (727)
324 PF10274 ParcG: Parkin co-regu 80.6 28 0.00062 28.0 11.3 72 214-287 38-110 (183)
325 PF04499 SAPS: SIT4 phosphatas 80.2 46 0.00099 31.8 12.5 107 298-407 20-128 (475)
326 PF04499 SAPS: SIT4 phosphatas 80.0 15 0.00032 35.0 9.2 116 255-375 20-152 (475)
327 PF08767 CRM1_C: CRM1 C termin 79.2 22 0.00048 31.9 9.8 186 187-375 42-248 (319)
328 KOG2229 Protein required for a 78.9 22 0.00047 33.4 9.4 152 239-418 4-158 (616)
329 PF06685 DUF1186: Protein of u 78.5 42 0.0009 28.7 14.6 130 212-347 71-202 (249)
330 KOG2038 CAATT-binding transcri 77.5 82 0.0018 31.6 16.7 93 13-117 315-409 (988)
331 cd08050 TAF6 TATA Binding Prot 77.0 22 0.00048 32.2 9.2 112 171-284 209-338 (343)
332 KOG0392 SNF2 family DNA-depend 76.5 61 0.0013 34.5 12.5 237 170-430 75-329 (1549)
333 PF09324 DUF1981: Domain of un 75.9 7.2 0.00016 26.9 4.5 67 127-197 14-84 (86)
334 PF08064 UME: UME (NUC010) dom 75.7 21 0.00045 25.9 7.1 80 256-340 11-95 (107)
335 PF06685 DUF1186: Protein of u 75.3 52 0.0011 28.2 14.6 130 45-198 31-180 (249)
336 PF04388 Hamartin: Hamartin pr 75.3 36 0.00078 34.1 10.8 61 227-287 81-141 (668)
337 KOG0301 Phospholipase A2-activ 75.1 88 0.0019 30.8 17.1 167 53-225 552-727 (745)
338 smart00802 UME Domain in UVSB 74.3 21 0.00045 25.9 6.7 80 256-340 11-95 (107)
339 KOG2199 Signal transducing ada 74.1 10 0.00022 34.1 5.9 73 343-427 46-119 (462)
340 PF08767 CRM1_C: CRM1 C termin 73.9 68 0.0015 28.8 14.1 180 230-426 43-244 (319)
341 PF09758 FPL: Uncharacterised 73.2 20 0.00042 27.7 6.6 124 76-199 14-147 (149)
342 KOG2149 Uncharacterized conser 72.2 25 0.00055 31.9 8.0 115 132-247 60-174 (393)
343 KOG2149 Uncharacterized conser 71.4 48 0.001 30.2 9.5 116 257-375 59-174 (393)
344 KOG0803 Predicted E3 ubiquitin 71.2 1.3E+02 0.0028 32.9 13.9 200 216-424 43-261 (1312)
345 PF14225 MOR2-PAG1_C: Cell mor 70.5 71 0.0015 27.7 17.1 176 88-285 64-253 (262)
346 PF03130 HEAT_PBS: PBS lyase H 70.4 5.7 0.00012 20.2 2.3 12 273-284 1-12 (27)
347 PF12783 Sec7_N: Guanine nucle 69.9 54 0.0012 26.1 9.5 106 16-125 36-154 (168)
348 PF12463 DUF3689: Protein of u 69.7 80 0.0017 28.0 11.9 80 298-377 94-179 (303)
349 smart00509 TFS2N Domain in the 69.6 26 0.00056 23.4 5.9 52 360-425 19-70 (75)
350 KOG2213 Apoptosis inhibitor 5/ 69.4 91 0.002 28.5 18.8 131 101-243 37-180 (460)
351 PF01417 ENTH: ENTH domain; I 69.3 28 0.00061 26.0 6.9 101 307-426 11-121 (125)
352 PF12054 DUF3535: Domain of un 69.1 42 0.00092 31.7 9.3 80 16-100 101-180 (441)
353 PF08389 Xpo1: Exportin 1-like 68.5 28 0.0006 26.7 7.0 49 186-238 100-148 (148)
354 KOG0301 Phospholipase A2-activ 68.5 1.3E+02 0.0027 29.8 14.7 161 184-352 556-726 (745)
355 PF14663 RasGEF_N_2: Rapamycin 68.1 46 0.00099 24.5 10.1 101 300-426 9-110 (115)
356 cd08050 TAF6 TATA Binding Prot 67.8 94 0.002 28.3 10.9 110 131-241 211-338 (343)
357 PF04821 TIMELESS: Timeless pr 67.1 66 0.0014 28.0 9.5 75 355-429 133-211 (266)
358 PF09758 FPL: Uncharacterised 67.1 7.3 0.00016 30.0 3.2 126 244-369 14-147 (149)
359 PF08711 Med26: TFIIS helical 67.0 26 0.00057 21.3 5.4 36 390-425 13-49 (53)
360 KOG1087 Cytosolic sorting prot 67.0 26 0.00056 33.1 7.3 73 343-427 39-113 (470)
361 KOG1087 Cytosolic sorting prot 66.6 41 0.0009 31.8 8.5 75 300-374 39-115 (470)
362 PF09324 DUF1981: Domain of un 66.4 24 0.00052 24.3 5.5 67 253-324 14-84 (86)
363 PF12054 DUF3535: Domain of un 66.0 1.2E+02 0.0027 28.7 12.3 306 102-421 101-438 (441)
364 KOG2011 Sister chromatid cohes 65.6 1.9E+02 0.004 30.7 13.9 141 265-429 296-438 (1048)
365 PF11791 Aconitase_B_N: Aconit 65.0 47 0.001 25.7 7.0 101 173-286 23-123 (154)
366 PF12074 DUF3554: Domain of un 64.3 1.1E+02 0.0025 27.7 17.8 193 131-330 23-237 (339)
367 KOG2213 Apoptosis inhibitor 5/ 63.8 1.2E+02 0.0026 27.8 11.9 55 227-287 37-91 (460)
368 KOG2549 Transcription initiati 63.1 1.4E+02 0.0031 28.7 11.1 142 6-160 211-370 (576)
369 PLN03205 ATR interacting prote 62.8 46 0.00099 30.3 7.6 157 46-204 324-519 (652)
370 PF04064 DUF384: Domain of unk 62.5 36 0.00079 21.4 5.2 45 389-433 11-56 (58)
371 PF08216 CTNNBL: Catenin-beta- 61.5 9.9 0.00021 27.4 2.8 41 318-360 65-105 (108)
372 KOG2676 Uncharacterized conser 61.5 15 0.00032 32.8 4.3 64 65-128 375-440 (478)
373 KOG2011 Sister chromatid cohes 60.7 1.4E+02 0.0031 31.4 11.5 134 54-198 296-432 (1048)
374 KOG2085 Serine/threonine prote 60.2 67 0.0014 29.5 8.2 84 78-162 167-250 (457)
375 PF01365 RYDR_ITPR: RIH domain 59.9 34 0.00075 28.3 6.4 115 254-374 41-172 (207)
376 cd00183 TFIIS_I N-terminal dom 59.6 50 0.0011 22.1 6.2 36 390-425 37-72 (76)
377 KOG1788 Uncharacterized conser 58.6 2.5E+02 0.0055 29.8 21.3 352 4-369 511-980 (2799)
378 KOG2073 SAP family cell cycle 58.3 2.3E+02 0.005 29.3 13.5 195 171-371 189-396 (838)
379 PF12463 DUF3689: Protein of u 57.9 1.4E+02 0.003 26.6 12.9 126 124-249 3-179 (303)
380 KOG2022 Nuclear transport rece 57.8 2.3E+02 0.005 29.2 14.5 137 186-333 481-624 (982)
381 KOG2005 26S proteasome regulat 56.9 2.1E+02 0.0046 28.4 14.8 79 169-249 45-131 (878)
382 PF11791 Aconitase_B_N: Aconit 56.0 29 0.00063 26.8 4.6 45 315-371 79-123 (154)
383 PF08216 CTNNBL: Catenin-beta- 55.2 16 0.00034 26.4 3.0 42 64-106 64-105 (108)
384 KOG1410 Nuclear transport rece 55.2 2.3E+02 0.005 28.3 19.3 143 90-243 7-157 (1082)
385 KOG2038 CAATT-binding transcri 54.4 2.5E+02 0.0054 28.5 18.0 105 46-161 305-410 (988)
386 PRK09169 hypothetical protein; 54.2 4.2E+02 0.0091 31.0 26.8 92 4-99 165-258 (2316)
387 PF06012 DUF908: Domain of Unk 54.0 59 0.0013 29.4 7.2 61 35-95 253-323 (329)
388 KOG2374 Uncharacterized conser 53.0 2.1E+02 0.0045 27.1 10.3 66 304-375 12-77 (661)
389 PF12783 Sec7_N: Guanine nucle 53.0 1.1E+02 0.0025 24.2 8.9 80 209-289 68-149 (168)
390 PF06012 DUF908: Domain of Unk 52.6 79 0.0017 28.6 7.8 64 62-126 238-306 (329)
391 KOG0889 Histone acetyltransfer 51.9 5.4E+02 0.012 31.7 16.1 285 132-430 986-1310(3550)
392 PLN03205 ATR interacting prote 51.1 2E+02 0.0044 26.5 10.3 161 169-330 320-518 (652)
393 PF04821 TIMELESS: Timeless pr 50.2 1.7E+02 0.0038 25.4 13.9 36 209-244 173-209 (266)
394 PF07923 N1221: N1221-like pro 50.1 73 0.0016 28.2 7.1 54 299-352 60-126 (293)
395 KOG1988 Uncharacterized conser 47.8 3.3E+02 0.0073 28.0 15.1 247 9-286 31-281 (970)
396 PF08713 DNA_alkylation: DNA a 46.5 1.7E+02 0.0036 24.2 11.6 141 48-213 54-196 (213)
397 KOG4524 Uncharacterized conser 45.6 79 0.0017 32.6 7.0 92 132-224 805-899 (1014)
398 KOG2140 Uncharacterized conser 45.4 2.5E+02 0.0054 27.1 9.5 63 299-367 238-300 (739)
399 KOG2073 SAP family cell cycle 44.8 3.8E+02 0.0083 27.9 13.8 68 332-406 180-248 (838)
400 PF08064 UME: UME (NUC010) dom 44.6 1.2E+02 0.0026 22.0 6.4 69 172-245 11-85 (107)
401 PF14663 RasGEF_N_2: Rapamycin 43.5 55 0.0012 24.1 4.4 38 89-127 9-46 (115)
402 smart00567 EZ_HEAT E-Z type HE 43.2 48 0.001 17.0 3.3 17 272-290 2-18 (30)
403 PF08389 Xpo1: Exportin 1-like 43.0 46 0.001 25.4 4.3 49 16-70 100-148 (148)
404 PF08713 DNA_alkylation: DNA a 43.0 1.9E+02 0.0041 23.9 9.0 142 91-255 54-196 (213)
405 KOG2549 Transcription initiati 42.9 3.2E+02 0.007 26.5 12.9 139 93-242 212-369 (576)
406 COG5537 IRR1 Cohesin [Cell div 42.5 3.4E+02 0.0075 26.7 12.1 98 99-200 286-385 (740)
407 PF01365 RYDR_ITPR: RIH domain 41.5 90 0.002 25.8 6.0 79 102-183 75-153 (207)
408 PF12765 Cohesin_HEAT: HEAT re 41.4 64 0.0014 18.6 3.6 27 170-196 16-42 (42)
409 KOG4524 Uncharacterized conser 40.2 4.6E+02 0.01 27.5 18.9 94 256-352 803-899 (1014)
410 PF11229 DUF3028: Protein of u 37.5 3.8E+02 0.0083 25.8 18.8 229 131-371 98-353 (589)
411 smart00802 UME Domain in UVSB 37.3 1.4E+02 0.0031 21.6 5.6 69 172-245 11-85 (107)
412 cd06561 AlkD_like A new struct 36.6 1.8E+02 0.0039 23.6 7.1 74 217-297 108-181 (197)
413 PF04118 Dopey_N: Dopey, N-ter 36.4 3.2E+02 0.0069 24.5 12.9 128 146-283 70-198 (307)
414 PF12397 U3snoRNP10: U3 small 34.8 1.9E+02 0.004 21.4 9.6 71 171-245 5-76 (121)
415 PF12397 U3snoRNP10: U3 small 34.1 1.9E+02 0.0042 21.3 9.6 65 3-75 7-74 (121)
416 PF07539 DRIM: Down-regulated 34.0 2.2E+02 0.0048 21.9 6.7 83 87-182 16-98 (141)
417 KOG0803 Predicted E3 ubiquitin 33.1 7.2E+02 0.016 27.6 17.3 252 5-266 44-330 (1312)
418 PF04510 DUF577: Family of unk 32.5 2.6E+02 0.0057 22.4 9.4 54 219-273 47-101 (174)
419 KOG2229 Protein required for a 32.5 3.8E+02 0.0082 25.8 8.6 108 171-284 15-127 (616)
420 PF14631 FancD2: Fanconi anaem 31.3 2.1E+02 0.0046 31.9 8.1 147 46-200 436-582 (1426)
421 PF07539 DRIM: Down-regulated 30.6 80 0.0017 24.3 3.7 36 391-426 11-46 (141)
422 PF12243 CTK3: CTD kinase subu 30.6 2.5E+02 0.0055 21.6 9.1 105 304-426 13-119 (139)
423 KOG4231 Intracellular membrane 30.4 82 0.0018 29.9 4.2 71 214-285 328-398 (763)
424 cd03562 CID CID (CTD-Interacti 29.8 2.2E+02 0.0048 20.7 6.9 87 143-238 17-103 (114)
425 KOG2676 Uncharacterized conser 28.3 86 0.0019 28.2 3.8 62 234-296 376-439 (478)
426 PF07923 N1221: N1221-like pro 28.2 1.4E+02 0.003 26.4 5.3 55 255-310 59-127 (293)
427 KOG2085 Serine/threonine prote 28.2 5E+02 0.011 24.2 10.1 74 170-244 175-249 (457)
428 PF07571 DUF1546: Protein of u 28.1 2.1E+02 0.0046 20.0 6.0 57 143-199 18-76 (92)
429 PF04510 DUF577: Family of unk 27.1 3.3E+02 0.0072 21.8 12.0 154 259-426 6-164 (174)
430 PF08623 TIP120: TATA-binding 26.4 3.4E+02 0.0074 21.7 6.9 75 229-309 42-116 (169)
431 PF04869 Uso1_p115_head: Uso1 26.3 4.8E+02 0.01 23.4 17.1 147 227-375 51-235 (312)
432 PF14666 RICTOR_M: Rapamycin-i 25.7 4.1E+02 0.0089 22.5 13.1 129 60-200 78-224 (226)
433 PF08623 TIP120: TATA-binding 25.5 3.4E+02 0.0075 21.7 6.4 76 144-223 40-115 (169)
434 KOG1791 Uncharacterized conser 25.4 6.7E+02 0.014 28.2 9.9 184 40-226 1434-1640(1758)
435 PF10257 RAI16-like: Retinoic 25.2 5.4E+02 0.012 23.6 11.3 139 207-348 2-177 (353)
436 PF14666 RICTOR_M: Rapamycin-i 25.0 4.3E+02 0.0093 22.4 11.6 129 102-242 78-224 (226)
437 COG5537 IRR1 Cohesin [Cell div 24.2 7.1E+02 0.015 24.7 13.2 106 220-330 281-388 (740)
438 KOG2312 Predicted transcriptio 23.7 11 0.00025 36.4 -2.3 124 54-181 43-170 (847)
439 PF14228 MOR2-PAG1_mid: Cell m 23.1 1E+03 0.022 26.1 21.2 70 88-162 196-277 (1120)
440 TIGR03504 FimV_Cterm FimV C-te 22.3 1.6E+02 0.0034 17.3 3.0 27 397-423 17-43 (44)
441 KOG4231 Intracellular membrane 22.2 94 0.002 29.5 3.1 63 265-328 337-399 (763)
442 KOG1851 Uncharacterized conser 21.9 9.2E+02 0.02 27.2 10.2 137 183-328 1538-1678(1710)
443 PF12243 CTK3: CTD kinase subu 21.1 3.9E+02 0.0085 20.5 7.8 58 260-328 12-69 (139)
444 cd06561 AlkD_like A new struct 20.5 4.6E+02 0.01 21.2 7.0 74 5-86 108-181 (197)
445 PRK09169 hypothetical protein; 20.4 1.5E+03 0.033 27.1 26.6 14 144-157 329-342 (2316)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-62 Score=429.39 Aligned_cols=424 Identities=68% Similarity=1.032 Sum_probs=402.6
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV 83 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 83 (446)
.+.+++.+.|+++..+..+...++++.+.+.+++...++..|++|.+++.|...+++.++..|+|+|.|+++++.+....
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 56788899999999999999999999999888899999999999999999987666999999999999999999999999
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-
Q 043676 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK- 162 (446)
Q Consensus 84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~- 162 (446)
+++.|+++.|+.++.+++..+++.|+|+|+|++.+++.+|+.+...|++++|+.++..+....+.+++.|+|+|||++.
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999965555689999999999999999
Q ss_pred CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhh
Q 043676 163 PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV 242 (446)
Q Consensus 163 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~ 242 (446)
|...+.....++|.|..++.+.|+++...++|++.+++.+..+.++.+++.|+++.|+.+|.+.+..++..|+++++|++
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV 307 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHH
Q 043676 243 TGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWA 322 (446)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 322 (446)
.+++.+.+.+++.|+++.+..++.......+|++|+|+++|++++++++++.+++.|++|.|+.+++.++.++|++|+|+
T Consensus 308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawa 387 (514)
T KOG0166|consen 308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWA 387 (514)
T ss_pred eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999999954377799999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHH
Q 043676 323 ISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKI 402 (446)
Q Consensus 323 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 402 (446)
++|++..+++++..++++.|++++++++|...|.++...++.++.++++.++....++ . +++...++++||++++
T Consensus 388 IsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~----~-n~~~~~IEe~ggldki 462 (514)
T KOG0166|consen 388 ISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRG----T-NPLAIMIEEAGGLDKI 462 (514)
T ss_pred HHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhcccc----c-cHHHHHHHHccChhHH
Confidence 9999999999999999999999999999999999999999999999999999986321 1 7899999999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhcCCCCCcc
Q 043676 403 ENLQSHDNNEIHEKSVKIFKTYWCGRNEEE 432 (446)
Q Consensus 403 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 432 (446)
+.|++|+|++++++|.++|++||.++++++
T Consensus 463 E~LQ~hen~~Iy~~A~~II~~yf~~e~~~~ 492 (514)
T KOG0166|consen 463 ENLQSHENEEIYKKAYKIIDTYFSEEDDED 492 (514)
T ss_pred HHhhccccHHHHHHHHHHHHHhcCCCcccc
Confidence 999999999999999999999999885555
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=5e-61 Score=393.18 Aligned_cols=438 Identities=55% Similarity=0.837 Sum_probs=407.6
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
-+|.|.+.|.|+|-+.+..|..-++++++.+..++.+.+++.|++|.+++++.+....-.+..|+|+|.|++++......
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 47899999999999999999999999999988999999999999999999996544368899999999999998888888
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcccc-chhHHHHHHHHHHHhhcC
Q 043676 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA-KLSMLRNATRTLSNFCRG 161 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-~~~~~~~a~~~L~~l~~~ 161 (446)
.+++.|++|.++++|.+++.+++++++|+|+|++.+++.+|+.+.+.|++.+++.++..+. +..+.+++.|+|+|||++
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG 231 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence 8999999999999999999999999999999999999999999999999999999995433 468999999999999999
Q ss_pred C-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHH
Q 043676 162 K-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240 (446)
Q Consensus 162 ~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~ 240 (446)
. |..........+|.|.+++.+.|+++...++|++.+++..+.+..+.+++.|+.+.|+.+|.+++..++..|++.++|
T Consensus 232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGN 311 (526)
T COG5064 232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGN 311 (526)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcC
Confidence 8 778888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHH
Q 043676 241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAA 320 (446)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~ 320 (446)
+..+++.+.+.++..|+++.+..+|.++ ...+|++|||+++|+++++.++++.+++.+++|+|+.++...+..++++||
T Consensus 312 IVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEAC 390 (526)
T COG5064 312 IVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEAC 390 (526)
T ss_pred eeecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCC--CHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhCh
Q 043676 321 WAISNATSGG--TQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGG 398 (446)
Q Consensus 321 ~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 398 (446)
||+.|...++ .|+.++++++.|++++|+++|.-.+..+.+.+++++.++++.++..+.... ..+|.|...++++||
T Consensus 391 WAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~--~nin~ya~~vE~Agg 468 (526)
T COG5064 391 WAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYG--KNINIYAVYVEKAGG 468 (526)
T ss_pred HHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhcc--CCccHHHHHHHhccc
Confidence 9999998764 578999999999999999999999988999999999999999988876544 367789999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCcccccccccccCCc
Q 043676 399 LEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEEEDALGSNVITNGK 444 (446)
Q Consensus 399 ~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 444 (446)
++.+..++++.+.+++.+|..||++||.++| +-+++.|+.-.|.|
T Consensus 469 md~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD-~vd~lapet~g~tf 513 (526)
T COG5064 469 MDAIHGLQDSVNRTIYDKAYSIIEKFFGEED-AVDELAPETAGNTF 513 (526)
T ss_pred HHHHHHhhhccccHHHHHHHHHHHHHcccch-hhhhcCccccCCee
Confidence 9999999999999999999999999998874 44458887666654
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-46 Score=331.36 Aligned_cols=370 Identities=25% Similarity=0.386 Sum_probs=332.8
Q ss_pred CChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676 2 GSFPALVAGVWS-DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN 80 (446)
Q Consensus 2 ~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 80 (446)
|.+|.+++.|.. .++.+|+.|+|+|.+++++. .+..+.+++.|++|.|+.++.+++ .+++++|+|+|+|++.+++.+
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence 789999999985 56999999999999999987 788889999999999999999999 899999999999999999999
Q ss_pred HHHHHhcCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 043676 81 TNVVIDHGAVPIFVKLLSSPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFC 159 (446)
Q Consensus 81 ~~~~~~~~~i~~L~~~L~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 159 (446)
|+.+++.|+++.|+.++..++. .+.+.+.|+|.|+|.+.......-.-..+++.|..++ .+.|+.+...++|++++|+
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999998765 7888999999999976521112222234788899888 8999999999999999999
Q ss_pred cCC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC-CCCccchhHHHHH
Q 043676 160 RGK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLTPALRT 237 (446)
Q Consensus 160 ~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~~~~~a~~~ 237 (446)
.+. +...+....|.+|.|+.+|.+.+..++..++++++|++.+++...+.++..|+++.|..++. ++...++.+|+|+
T Consensus 266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~ 345 (514)
T KOG0166|consen 266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT 345 (514)
T ss_pred cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence 887 55566667899999999999999999999999999999999999999999999999999999 5666699999999
Q ss_pred HHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCCcchH
Q 043676 238 VGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAVIDAGLIRPIVNLLQNAEFDTK 316 (446)
Q Consensus 238 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~ 316 (446)
++|++.++.++.+.+++.|++|.|+.++++. +.++|++|+|+++|++. ++++++.++++.|++++|+.+|...|.++.
T Consensus 346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii 424 (514)
T KOG0166|consen 346 ISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKII 424 (514)
T ss_pred HHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHH
Confidence 9999999999999999999999999999999 89999999999999987 689999999999999999999988899999
Q ss_pred HHHHHHHHHhccCCC-------HHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676 317 KEAAWAISNATSGGT-------QEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 317 ~~a~~aL~~l~~~~~-------~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 375 (446)
..++.++.++...+. ......+.+.|+++++..+-.+.+.++...|..++.++|..++.
T Consensus 425 ~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e~~ 490 (514)
T KOG0166|consen 425 LVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEEDD 490 (514)
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCCcc
Confidence 999999999977532 23345566789999999999999999999999999999876533
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.2e-45 Score=299.76 Aligned_cols=365 Identities=24% Similarity=0.323 Sum_probs=324.5
Q ss_pred CChHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676 2 GSFPALVAGV-WSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN 80 (446)
Q Consensus 2 ~~i~~l~~~l-~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 80 (446)
|.+|.+++.+ ..+..-.+++|+|+|.+++++. ..+.+.+++.|++|.++++|.+++ .+++.+++|+|+|++.+++.+
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~~ 191 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEGC 191 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchhH
Confidence 7899999999 5677788999999999999987 677788899999999999999999 899999999999999999999
Q ss_pred HHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCC--hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHH
Q 043676 81 TNVVIDHGAVPIFVKLLSSP--SDDVREQAVWALGNVAGDS--PRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLS 156 (446)
Q Consensus 81 ~~~~~~~~~i~~L~~~L~~~--~~~v~~~a~~~l~~l~~~~--~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~ 156 (446)
|+.+.+.|++++++.++.+. +..+.+++.|+|+|+|.+. +..-..+.+ .++.|.+++ ...++++...|+|+++
T Consensus 192 RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq--alpiL~KLi-ys~D~evlvDA~WAiS 268 (526)
T COG5064 192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ--ALPILAKLI-YSRDPEVLVDACWAIS 268 (526)
T ss_pred HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH--HHHHHHHHH-hhcCHHHHHHHHHHHH
Confidence 99999999999999998874 4578899999999999654 222223322 578888888 8889999999999999
Q ss_pred HhhcCC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHH
Q 043676 157 NFCRGK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPAL 235 (446)
Q Consensus 157 ~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~ 235 (446)
+++..+ .........|+.+.|+.+|.+++..++..+++.++|+...++.+.+.++..|+++.+..+|.++...+|..||
T Consensus 269 YlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaC 348 (526)
T COG5064 269 YLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEAC 348 (526)
T ss_pred HhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhh
Confidence 999987 3444455578899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC---CHHHHHHHHHcCChHHHHHHHhcCC
Q 043676 236 RTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG---NREQIQAVIDAGLIRPIVNLLQNAE 312 (446)
Q Consensus 236 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~~ 312 (446)
|+++|++.++.++.+.+++.+++|+|+.+|... +..++++|||+++|..++ .|+.++++++.|++.+|+++|...+
T Consensus 349 WTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~d 427 (526)
T COG5064 349 WTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVD 427 (526)
T ss_pred eeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccC
Confidence 999999999999999999999999999999999 999999999999999873 6788999999999999999999988
Q ss_pred cchHHHHHHHHHHhccCCCH----------HHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHh
Q 043676 313 FDTKKEAAWAISNATSGGTQ----------EQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKV 372 (446)
Q Consensus 313 ~~v~~~a~~aL~~l~~~~~~----------~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~ 372 (446)
..+.+.++.++.|+...+.. ....++.+.|+++.+..+-++.+.++..+|..++..+|..
T Consensus 428 Nkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFge 497 (526)
T COG5064 428 NKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGE 497 (526)
T ss_pred ccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHccc
Confidence 88999999999999876532 2233444589999999999999999999999999988843
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=3e-40 Score=334.67 Aligned_cols=412 Identities=22% Similarity=0.253 Sum_probs=335.9
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT 81 (446)
Q Consensus 2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 81 (446)
|++|.++++|+++++..|..|+++|.+++... .+.+..+++.|++|.|+++|++++++.+|+.|+|+|.+++.++++.+
T Consensus 189 GaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r 267 (2102)
T PLN03200 189 GGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAK 267 (2102)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHH
Confidence 78999999999999999999999998888764 45788899999999999999876547999999999999999899999
Q ss_pred HHHHhcCChHHHHHhhCCCC---------HHHHHHHHHHHHHhhCCChH-----------HHHH----------------
Q 043676 82 NVVIDHGAVPIFVKLLSSPS---------DDVREQAVWALGNVAGDSPR-----------CRDL---------------- 125 (446)
Q Consensus 82 ~~~~~~~~i~~L~~~L~~~~---------~~v~~~a~~~l~~l~~~~~~-----------~~~~---------------- 125 (446)
..+++.|+++.|++++..++ ..++++|+|+|+|+|.+.+. .++.
T Consensus 268 ~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l 347 (2102)
T PLN03200 268 QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMV 347 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence 99999999999999998655 34699999999999975322 0000
Q ss_pred ----------------------------------------------------HHHcCChHHHHHHhccccchhHHHHHHH
Q 043676 126 ----------------------------------------------------VLSQGALIPLLAELNEHAKLSMLRNATR 153 (446)
Q Consensus 126 ----------------------------------------------------~~~~~~i~~l~~~l~~~~~~~~~~~a~~ 153 (446)
+.+.++++.|+.++ ...+.+++..++|
T Consensus 348 ~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL-~~~~~evQ~~Av~ 426 (2102)
T PLN03200 348 FDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLI-TMATADVQEELIR 426 (2102)
T ss_pred cCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhh-ccCCHHHHHHHHH
Confidence 00112222233333 3344678899999
Q ss_pred HHHHhhcCC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchh
Q 043676 154 TLSNFCRGK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLT 232 (446)
Q Consensus 154 ~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 232 (446)
+|++++.+. .........+++|.|+++|.+++..+++.+++++++++..+++....+.+.|+++.|+++|.+++..+++
T Consensus 427 aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqe 506 (2102)
T PLN03200 427 ALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKE 506 (2102)
T ss_pred HHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence 999999876 4445556688999999999999999999999999999998887788899999999999999999999999
Q ss_pred HHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHH--------------------------------
Q 043676 233 PALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWI-------------------------------- 280 (446)
Q Consensus 233 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~-------------------------------- 280 (446)
.|+|+|+|++.+.+..+..+.+.|+++.|+++|+++ +.+.++.|+|+
T Consensus 507 eAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL 585 (2102)
T PLN03200 507 DSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVL 585 (2102)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHH
Confidence 999999999986544333333556666666665555 44455555554
Q ss_pred -----------------------------------------------HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCc
Q 043676 281 -----------------------------------------------ISNITAGNREQIQAVIDAGLIRPIVNLLQNAEF 313 (446)
Q Consensus 281 -----------------------------------------------l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 313 (446)
|.+++.++++....++..|++++++.++++++.
T Consensus 586 ~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~ 665 (2102)
T PLN03200 586 DVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTE 665 (2102)
T ss_pred HHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCh
Confidence 444444445555666777889999999998889
Q ss_pred chHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHH
Q 043676 314 DTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFV 393 (446)
Q Consensus 314 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l 393 (446)
++++.++|+|.+++..+..++...+.+.|++++|++++++.+.++...++.+|.+++..++. ...+
T Consensus 666 ~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~--------------~~ei 731 (2102)
T PLN03200 666 AVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV--------------AAEA 731 (2102)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchH--------------HHHH
Confidence 99999999999999887888888889999999999999999999999999999999998876 3566
Q ss_pred HHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 043676 394 EEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNE 430 (446)
Q Consensus 394 ~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 430 (446)
.+.|+++.|.+++.+.+++.++.|.++|.++......
T Consensus 732 ~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~ 768 (2102)
T PLN03200 732 LAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPV 768 (2102)
T ss_pred HhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCCh
Confidence 6789999999999999999999999999888765543
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=5.8e-39 Score=325.42 Aligned_cols=416 Identities=18% Similarity=0.185 Sum_probs=367.2
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT 81 (446)
Q Consensus 2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 81 (446)
|+++.|+.+|.+.+.++|..++++|..++.++ .+.++.+.+.|++|.|+++|.+++ +.+|..|++.+++++.++++++
T Consensus 404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence 46788999999999999999999999988775 677888999999999999999998 8999999999999998888999
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676 82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG 161 (446)
Q Consensus 82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 161 (446)
..+++.|+++.|+++|.+++..+++.|+|+|+|++.+.+..+..+.+.|++++|+++| ++.+.+.+..++|+|.+++..
T Consensus 482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988777888888899999999999 677899999999999999754
Q ss_pred CCCC----------------------------------C----hhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC
Q 043676 162 KPEP----------------------------------P----FDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGT 203 (446)
Q Consensus 162 ~~~~----------------------------------~----~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~ 203 (446)
.... . .....++++.|+.+++++++.+++.++++|.+++...
T Consensus 561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~ 640 (2102)
T PLN03200 561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR 640 (2102)
T ss_pred cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 3111 0 0012578999999999999999999999999999998
Q ss_pred cHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCc-hhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHH
Q 043676 204 NDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDD-FQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIIS 282 (446)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~ 282 (446)
++..+.++..|++++++.++.+.+.+++..++++|++++.+.. .+...+++.|++++|+++|++. +..++..|+.+|.
T Consensus 641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa 719 (2102)
T PLN03200 641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA 719 (2102)
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence 8888889999999999999999999999999999999996443 4455678999999999999998 9999999999999
Q ss_pred HHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHH--HHHHHHcCChHHHHhcccCCCHHHHH
Q 043676 283 NITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQ--IKHLVREGCVKPLCDLLLCSDPEIVT 360 (446)
Q Consensus 283 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~--~~~l~~~~~i~~L~~ll~~~~~~~~~ 360 (446)
|++.. ++....+.+.|+++.|++++++++++.|+.|+++|.+++.....+. ...+...|.+..|+++|+..|.+...
T Consensus 720 nLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~ 798 (2102)
T PLN03200 720 NLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSA 798 (2102)
T ss_pred HHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhh
Confidence 99875 4456777788999999999999999999999999999998865444 35667789999999999998888766
Q ss_pred H--HHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 043676 361 V--CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGR 428 (446)
Q Consensus 361 ~--~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 428 (446)
. ++++|..+.+..+... ...+++...++..++++.|.+...+.+|.++++|.++|+++-.+.
T Consensus 799 ~~~al~~l~~l~~~~~~~~------~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~ 862 (2102)
T PLN03200 799 TSEALEALALLARTKGGAN------FSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQ 862 (2102)
T ss_pred HHHHHHHHHHHHhhcccCC------CCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccC
Confidence 6 9999999988655544 356778999999999999977779999999999999999987654
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-33 Score=232.80 Aligned_cols=363 Identities=21% Similarity=0.223 Sum_probs=319.6
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
...++...+++.++.+|..+...+.+++-. .++.-.++..+++..|+.-+..+. .++|..++.|+.|++. -++++.
T Consensus 86 s~epvl~llqs~d~~Iq~aa~~alGnlAVn--~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT-~d~nk~ 161 (550)
T KOG4224|consen 86 SNEPVLALLQSCDKCIQCAAGEALGNLAVN--MENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLAT-FDSNKV 161 (550)
T ss_pred hhhHHHHHHhCcchhhhhhhhhhhccceec--cCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhc-cccchh
Confidence 356677889999999999999999998876 455556677788888887777777 6999999999999998 588999
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK 162 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 162 (446)
.+...|++.++.++-++.+..++.++..+|.|+.. ..+.|..++..|+++.++.++ ++.+..++..++.++++++-+.
T Consensus 162 kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd~ 239 (550)
T KOG4224|consen 162 KIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVDR 239 (550)
T ss_pred hhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhhH
Confidence 99999999999998888999999999999999994 455788999999999999999 8899999999999999999887
Q ss_pred CCCChhhhh--hhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHH
Q 043676 163 PEPPFDQVR--PALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240 (446)
Q Consensus 163 ~~~~~~~~~--~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~ 240 (446)
..+...... ..+|.|+.++.+++++++-.+..++++++.... ....+++.|.+|.++++++++.-+.......|+.|
T Consensus 240 ~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrn 318 (550)
T KOG4224|consen 240 RARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSPMGPLILASVACIRN 318 (550)
T ss_pred HHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhh
Confidence 555555554 499999999999999999999999999998765 45569999999999999999888888999999999
Q ss_pred hhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHH
Q 043676 241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAA 320 (446)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~ 320 (446)
++-+.- +.-.+.+.|++.+++.+|....+.+++-.|..+|.|++..+......+.+.|.+|.++.++.++...++...-
T Consensus 319 isihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseis 397 (550)
T KOG4224|consen 319 ISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEIS 397 (550)
T ss_pred cccccC-cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHH
Confidence 987543 3445779999999999999886777999999999999987888899999999999999999999999999999
Q ss_pred HHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676 321 WAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 321 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 375 (446)
.++..++.. ......+.+.|.++.|+.+..+.+.+++.++..+|.|+...-+.
T Consensus 398 ac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~ 450 (550)
T KOG4224|consen 398 ACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH 450 (550)
T ss_pred HHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH
Confidence 999998874 56678889999999999999999999999999999998765544
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-32 Score=229.06 Aligned_cols=364 Identities=20% Similarity=0.287 Sum_probs=318.2
Q ss_pred CCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676 1 LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN 80 (446)
Q Consensus 1 ~~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 80 (446)
++++..|+..+.++...+|..+..++.+++.. .++...+...|++.++.++-++.+ ..+|..+..+|.++.. ..++
T Consensus 125 l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~En 200 (550)
T KOG4224|consen 125 LLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SREN 200 (550)
T ss_pred ccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hhhh
Confidence 45677788878888888999999999999988 566777889999999999877777 8999999999999998 8899
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcC--ChHHHHHHhccccchhHHHHHHHHHHHh
Q 043676 81 TNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQG--ALIPLLAELNEHAKLSMLRNATRTLSNF 158 (446)
Q Consensus 81 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~--~i~~l~~~l~~~~~~~~~~~a~~~L~~l 158 (446)
|+.++..|+++.|+.++++.+.++++.|+.+++|++-+ ...|..+.+.+ .++.++.++ +++++.++..+..+|.++
T Consensus 201 Rr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrnl 278 (550)
T KOG4224|consen 201 RRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRNL 278 (550)
T ss_pred hhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999954 44677888888 899999999 888999999999999999
Q ss_pred hcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCcc-chhHHHHH
Q 043676 159 CRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPS-VLTPALRT 237 (446)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-~~~~a~~~ 237 (446)
+.+..........|.+|.++++++++..+.......|+.|++.++-.. ..+.+.|++.+|+.+|+..+.+ ++..|..+
T Consensus 279 asdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe-~lI~dagfl~pLVrlL~~~dnEeiqchAvst 357 (550)
T KOG4224|consen 279 ASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE-VLIADAGFLRPLVRLLRAGDNEEIQCHAVST 357 (550)
T ss_pred cccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc-cceecccchhHHHHHHhcCCchhhhhhHHHH
Confidence 999877777777899999999999998888888889999999876543 3588899999999999996655 89999999
Q ss_pred HHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHH
Q 043676 238 VGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKK 317 (446)
Q Consensus 238 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~ 317 (446)
|+||+.........+.++|.++.+..++.+. +..++.+...+++.++.. ...+..+.+.|+++.|+.++.+.+.+++.
T Consensus 358 LrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~g 435 (550)
T KOG4224|consen 358 LRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVRG 435 (550)
T ss_pred HHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhhcc
Confidence 9999998888888899999999999999999 899999999999999754 55668899999999999999999999999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHH------cCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676 318 EAAWAISNATSGGTQEQIKHLVR------EGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 318 ~a~~aL~~l~~~~~~~~~~~l~~------~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 375 (446)
+|+.+|.|++. +.++...+++ .|.-..|..++.+.+..++..+.|.+.+++..+..
T Consensus 436 NaAaAL~Nlss--~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~~ 497 (550)
T KOG4224|consen 436 NAAAALINLSS--DVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHDL 497 (550)
T ss_pred cHHHHHHhhhh--hhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999987 4555555555 24455688888888889999999999888865443
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.97 E-value=7.2e-27 Score=219.73 Aligned_cols=379 Identities=22% Similarity=0.201 Sum_probs=316.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHH
Q 043676 16 NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVK 95 (446)
Q Consensus 16 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 95 (446)
..+.+.+...|.|++.. ......+.+.|+++.|+++|++++ .++...++..|.+++. ..+++..+.+.|+++.|.+
T Consensus 263 eqLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~k 338 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLK 338 (708)
T ss_pred HHHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHH
Confidence 34455778889998886 566677889999999999999998 8999999999999998 7889999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHH
Q 043676 96 LLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALP 175 (446)
Q Consensus 96 ~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 175 (446)
++.+++.+++..++++|.|++.+ +..|..+.+.|++|.++.++. ++..+..++.+|++++.+...+.....++++|
T Consensus 339 Ll~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~---d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp 414 (708)
T PF05804_consen 339 LLPSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLK---DPNFREVALKILYNLSMDDEARSMFAYTDCIP 414 (708)
T ss_pred HhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhC---CCchHHHHHHHHHHhccCHhhHHHHhhcchHH
Confidence 99999999999999999999954 557999999999999999993 34566779999999999987777777889999
Q ss_pred HHHHhhcC-CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHh
Q 043676 176 ALAQLVHS-NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIIN 254 (446)
Q Consensus 176 ~l~~ll~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~ 254 (446)
.++.++-+ +++.+...++..+.|++.... ..+.+.+.++++.|+...-.... ...+..+.|++.+.+.....+.
T Consensus 415 ~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~- 489 (708)
T PF05804_consen 415 QLMQMLLENSEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV- 489 (708)
T ss_pred HHHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH-
Confidence 99987654 567777888899999998765 55678888889998887655332 2355789999998765554443
Q ss_pred cCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--CcchHHHHHHHHHHhccCCCH
Q 043676 255 HGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA--EFDTKKEAAWAISNATSGGTQ 332 (446)
Q Consensus 255 ~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~ 332 (446)
+++..++..+..+.+++...+++++|+|+...+......+.+.+++|.+.+++..+ ++++.-+++..++.++. ++
T Consensus 490 -~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d~ 566 (708)
T PF05804_consen 490 -DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--DP 566 (708)
T ss_pred -HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--CH
Confidence 47888888888776889999999999999866555545555789999999999865 56789999999999987 67
Q ss_pred HHHHHHHHcCChHHHHhcccC--CCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCC
Q 043676 333 EQIKHLVREGCVKPLCDLLLC--SDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDN 410 (446)
Q Consensus 333 ~~~~~l~~~~~i~~L~~ll~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~ 410 (446)
.....+.+.|+++.|++++.. .|.++....+.++++++...+.. ...+.+.+....+..++++.|
T Consensus 567 ~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr-------------~~ll~~~~~~~ylidL~~d~N 633 (708)
T PF05804_consen 567 ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR-------------EVLLKETEIPAYLIDLMHDKN 633 (708)
T ss_pred HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH-------------HHHHhccchHHHHHHHhcCCC
Confidence 888888899999999999965 46788899999999999887664 466788899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 043676 411 NEIHEKSVKIFKT 423 (446)
Q Consensus 411 ~~v~~~a~~~l~~ 423 (446)
+++++.+..++.-
T Consensus 634 ~~ir~~~d~~Ldi 646 (708)
T PF05804_consen 634 AEIRKVCDNALDI 646 (708)
T ss_pred HHHHHHHHHHHHH
Confidence 9999887766653
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.96 E-value=1e-25 Score=212.01 Aligned_cols=361 Identities=19% Similarity=0.248 Sum_probs=302.7
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT 81 (446)
Q Consensus 2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 81 (446)
|.++.|++.|.+++..+...++.+|.+++.. .++...+.+.|+++.|.+++.+++ .+++..++++|.|++. +++.|
T Consensus 290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d~~~R 365 (708)
T PF05804_consen 290 GIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-DPELR 365 (708)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-CHHHH
Confidence 6799999999999999999999999998876 577889999999999999999998 8999999999999999 89999
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676 82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG 161 (446)
Q Consensus 82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 161 (446)
..+++.|++|.|+.+|.++ ..+..++.+|++++.+. +.+..+...++++.+++++...+++.+...+++.+.|++.+
T Consensus 366 ~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd-~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDD-EARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN 442 (708)
T ss_pred HHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCH-hhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence 9999999999999999864 46677999999999644 57888888999999999987777888888899999999999
Q ss_pred CCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHH
Q 043676 162 KPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGN 240 (446)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~ 240 (446)
..+.......++++.|+...-.... ...+..+.|++.+++.....+. +++..|+.++.. .+++....++++|+|
T Consensus 443 ~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaN 517 (708)
T PF05804_consen 443 KRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILAN 517 (708)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHh
Confidence 8666666666778888776544322 2245689999998754444333 678888888877 456778889999999
Q ss_pred hhcCCchhhHHHHhcCChHHHHHHhccC-chHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--CcchHH
Q 043676 241 IVTGDDFQTQCIINHGAVPYLLDMLVHN-HEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA--EFDTKK 317 (446)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~ 317 (446)
+...+......+-+.+++|.+...|..+ .++++..+++..++.++. ++.....+.+.|+++.|+.+++.. |.++..
T Consensus 518 L~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~Vl 596 (708)
T PF05804_consen 518 LTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVL 596 (708)
T ss_pred cccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHH
Confidence 9986666666666789999999999754 245788999999998875 577778888999999999999875 688999
Q ss_pred HHHHHHHHhccCCCHHHHHHHH-HcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 043676 318 EAAWAISNATSGGTQEQIKHLV-REGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAER 377 (446)
Q Consensus 318 ~a~~aL~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~ 377 (446)
+.++++..+..+ ++.+..++ +.+++..|++++++++++++..|-.+|.-+.+.++...
T Consensus 597 Qil~~f~~ll~h--~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~ 655 (708)
T PF05804_consen 597 QILYVFYQLLFH--EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWA 655 (708)
T ss_pred HHHHHHHHHHcC--hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 999999999986 45566664 47889999999999999999999999999888877654
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.88 E-value=4.1e-21 Score=176.81 Aligned_cols=399 Identities=20% Similarity=0.243 Sum_probs=293.2
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChh--h
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSE--N 80 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~--~ 80 (446)
.+|..+.+|.+.++.+|-.|+..+..++.++ +.-...+.+.|+++.|+.++.+++ .+++.+|+++|.|+..+... +
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCccc
Confidence 4678899999999999999999999887775 555667788899999999999999 89999999999999985544 8
Q ss_pred HHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc-------------ccchh
Q 043676 81 TNVVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE-------------HAKLS 146 (446)
Q Consensus 81 ~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-------------~~~~~ 146 (446)
+..+.+.++++.++++|+. .|.++++.+..+|+||++. +.++..++.. .+..|...... ..+.+
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccce
Confidence 8899999999999999997 8999999999999999966 4455555443 45555544321 11367
Q ss_pred HHHHHHHHHHHhhcCC--CCCChhhhhhhHHHHHHhhc------CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHH
Q 043676 147 MLRNATRTLSNFCRGK--PEPPFDQVRPALPALAQLVH------SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPR 218 (446)
Q Consensus 147 ~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~l~~ll~------~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 218 (446)
+..++..||.|++... ....+-...|.+..|+..++ ..|.+..+++...+.|++..-.... -+.
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Ev--------p~~ 461 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEV--------PPK 461 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhc--------CHh
Confidence 8899999999999865 33444455789999988887 2378888999999999985432111 111
Q ss_pred HHHhcCCCC----ccchhHHHHHHHHhhcC---------------CchhhHHHHhcCChHHHHHHhccCchHHHHHHHHH
Q 043676 219 LVELLGHPS----PSVLTPALRTVGNIVTG---------------DDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISW 279 (446)
Q Consensus 219 l~~ll~~~~----~~~~~~a~~~l~~l~~~---------------~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~ 279 (446)
....+...+ ..-......|++.-... .+.....+.+..++...+.++....+..+.+.++.
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaG 541 (717)
T KOG1048|consen 462 YRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAG 541 (717)
T ss_pred hhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhh
Confidence 111111100 00000223333333222 12222334455567776667765557889999999
Q ss_pred HHHHHhcCC----HHHHHHH-HHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCC
Q 043676 280 IISNITAGN----REQIQAV-IDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCS 354 (446)
Q Consensus 280 ~l~~l~~~~----~~~~~~~-~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~ 354 (446)
+|-|++.+. ......+ .+..+++.++++++.+++.+.+.++.+|.|++.. ..+... +-.++++.|++.|...
T Consensus 542 aLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d--~rnk~l-igk~a~~~lv~~Lp~~ 618 (717)
T KOG1048|consen 542 ALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD--IRNKEL-IGKYAIPDLVRCLPGS 618 (717)
T ss_pred hHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC--chhhhh-hhcchHHHHHHhCcCC
Confidence 999998742 2333334 5678999999999999999999999999999984 455444 4578999999999653
Q ss_pred ------CHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCC-CHHHHHHHHHHHHHhcCC
Q 043676 355 ------DPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHD-NNEIHEKSVKIFKTYWCG 427 (446)
Q Consensus 355 ------~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~~ 427 (446)
+.++...++..|.+++...... .+.+.+.+|+++|..+..+. +++..+.|...+..+|..
T Consensus 619 ~~~~~~sedtv~~vc~tl~niv~~~~~n-------------Akdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y 685 (717)
T KOG1048|consen 619 GPSTSLSEDTVRAVCHTLNNIVRKNVLN-------------AKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQY 685 (717)
T ss_pred CCCcCchHHHHHHHHHhHHHHHHHhHHH-------------HHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 3578889999999999765554 57777899999999886554 568888888888888765
Q ss_pred CC
Q 043676 428 RN 429 (446)
Q Consensus 428 ~~ 429 (446)
.|
T Consensus 686 ~e 687 (717)
T KOG1048|consen 686 KE 687 (717)
T ss_pred HH
Confidence 43
No 12
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.8e-19 Score=164.44 Aligned_cols=389 Identities=21% Similarity=0.283 Sum_probs=310.5
Q ss_pred hHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 4 FPALVAGVWSD-DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 4 i~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
+..|++.|+.+ |+..|++|+.-|+.++.-.+.+....+.-..++|.|+.+|++..+.++...|+++|.+++.--|+...
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 56788888876 99999999999999888765555556666678999999999988899999999999999998899999
Q ss_pred HHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676 83 VVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG 161 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 161 (446)
.+++.++|+.|+.-|.. ...++.++++.+|-.|++..+. .+.+.|++...+..+ +.-+...++.|+.+..|+|..
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCKS 324 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999987665 7799999999999999987764 688999999999999 677889999999999999999
Q ss_pred CCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhcc---CCcHHHHHHHHhCcHHHHHHhcCCCCc----cchhHH
Q 043676 162 KPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLAD---GTNDKIQAVIEAGVCPRLVELLGHPSP----SVLTPA 234 (446)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~---~~~~~~~~~~~~~~~~~l~~ll~~~~~----~~~~~a 234 (446)
-+...+....+.+|.|..+|+..|.+..+.++-|+..++. +.++..+.+...|++....+++.-... .+....
T Consensus 325 i~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~v 404 (1051)
T KOG0168|consen 325 IRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGV 404 (1051)
T ss_pred CCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHH
Confidence 8888888889999999999999999999999999999884 466777888889999999999876532 344556
Q ss_pred HHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCch--------------HHHHHHH-----------------------
Q 043676 235 LRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHE--------------EIIKKEI----------------------- 277 (446)
Q Consensus 235 ~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--------------~~v~~~a----------------------- 277 (446)
...+..++++++.....+.+.++...+..+|..... .++-+-.
T Consensus 405 Irmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~ 484 (1051)
T KOG0168|consen 405 IRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLI 484 (1051)
T ss_pred HHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhh
Confidence 777888888888877778888887777777643210 0000000
Q ss_pred ----------------------------HHHHH-------------HH---------hcCCHHHHHHHHHcCChHHHHHH
Q 043676 278 ----------------------------SWIIS-------------NI---------TAGNREQIQAVIDAGLIRPIVNL 307 (446)
Q Consensus 278 ----------------------------~~~l~-------------~l---------~~~~~~~~~~~~~~~~i~~L~~l 307 (446)
.+.+. +. ....++..+.+.+ .++|.|++.
T Consensus 485 ~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLveV 563 (1051)
T KOG0168|consen 485 YEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVEV 563 (1051)
T ss_pred cccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHHH
Confidence 01111 00 0011222233333 478888888
Q ss_pred HhcC-CcchHHHHHHHHHHhccCCCHHHHHHHHH-cCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCc
Q 043676 308 LQNA-EFDTKKEAAWAISNATSGGTQEQIKHLVR-EGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGD 385 (446)
Q Consensus 308 l~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 385 (446)
+.+. ++.||..++.||..+....+.+.+..++. ..+-..+..++.+++..+..-++....-+++.-++-
T Consensus 564 YsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~--------- 634 (1051)
T KOG0168|consen 564 YSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDT--------- 634 (1051)
T ss_pred HhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHH---------
Confidence 8765 89999999999999988888887777654 456677888999999999999999888888765554
Q ss_pred cchHHHHHHHhChHHHHHHhhcCC
Q 043676 386 VNQYAQFVEEAGGLEKIENLQSHD 409 (446)
Q Consensus 386 ~~~~~~~l~~~~~~~~l~~l~~~~ 409 (446)
|...|.+.|.+..+++|....
T Consensus 635 ---F~~~F~REGV~~~v~~L~~~~ 655 (1051)
T KOG0168|consen 635 ---FSPSFRREGVFHAVKQLSVDS 655 (1051)
T ss_pred ---hhhhHhhhhHHHHHHHHhccC
Confidence 789999999999999997743
No 13
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.83 E-value=1.6e-16 Score=148.82 Aligned_cols=398 Identities=18% Similarity=0.166 Sum_probs=293.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHH
Q 043676 6 ALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVI 85 (446)
Q Consensus 6 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 85 (446)
.+...|.+.+.+....++.+|..+.... .... . ..+..+.|...|.+++ +.+|..+++.++++..++......+.
T Consensus 42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~-l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 42 VLFDCLNTSNREQVELICDILKRLLSAL--SPDS-L-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHH-H-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 3566788777777778888888877753 2222 2 4567899999999999 89999999999999987777778888
Q ss_pred hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CC
Q 043676 86 DHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK-PE 164 (446)
Q Consensus 86 ~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~ 164 (446)
+.++++.++.++.+++..+...|+.+|.+++...+.. +.++..+.+..|..++ ...+..++..+..++.+++..+ ..
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHH
Confidence 8999999999999999999999999999999766544 4566777788888888 5557788889999999998876 33
Q ss_pred CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccc-----h-hHHHHHH
Q 043676 165 PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSV-----L-TPALRTV 238 (446)
Q Consensus 165 ~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-----~-~~a~~~l 238 (446)
.......|+++.++..+.++|.-++..++.++..++. .+...+.+.+.|+++.|..++.+.+.+- . ...+...
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~ 273 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF 273 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence 3444457899999999999999999999999999999 4556777899999999999998743222 2 2234667
Q ss_pred HHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHH-HHcC-C----hHHHHHHHhcCC
Q 043676 239 GNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAV-IDAG-L----IRPIVNLLQNAE 312 (446)
Q Consensus 239 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~-~~~~-~----i~~L~~ll~~~~ 312 (446)
++++...+....... ..++..+.+++.+. +...+..|..+++.++. +.+....+ .+.+ . +........++.
T Consensus 274 g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~ 350 (503)
T PF10508_consen 274 GNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGS 350 (503)
T ss_pred HHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHhcCCc
Confidence 777775443332211 23556667777777 89999999999999975 45666666 4332 3 444444555667
Q ss_pred cchHHHHHHHHHHhccCCCH---HHHHHH-------HHcCChH-HHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccC
Q 043676 313 FDTKKEAAWAISNATSGGTQ---EQIKHL-------VREGCVK-PLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGT 381 (446)
Q Consensus 313 ~~v~~~a~~aL~~l~~~~~~---~~~~~l-------~~~~~i~-~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 381 (446)
.++|..++.++.++.....+ +....+ ...+... .+..+++.+=|+++..++..+..++...-.
T Consensus 351 ~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg------ 424 (503)
T PF10508_consen 351 TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG------ 424 (503)
T ss_pred hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH------
Confidence 78999999999999654332 111111 1223344 778888888899999999999998876433
Q ss_pred CCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043676 382 TIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCG 427 (446)
Q Consensus 382 ~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 427 (446)
........|.++.+-+=....+.+.++.=-.++..+...
T Consensus 425 -------~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 425 -------QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred -------HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 245666666666654444445666666656666666533
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.82 E-value=1.2e-16 Score=149.69 Aligned_cols=366 Identities=17% Similarity=0.192 Sum_probs=277.7
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHH
Q 043676 48 PRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVL 127 (446)
Q Consensus 48 ~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 127 (446)
+.+...+++.+ .+....++.+|..+.. ....... ..+..+.|...|.++++.+|..+++.+.++...+......+.
T Consensus 41 ~~lf~~L~~~~-~e~v~~~~~iL~~~l~-~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 41 PVLFDCLNTSN-REQVELICDILKRLLS-ALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHHHhhcC-hHHHHHHHHHHHHHHh-ccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 34778888877 6777888889999887 2222222 346679999999999999999999999999988877777888
Q ss_pred HcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHH
Q 043676 128 SQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKI 207 (446)
Q Consensus 128 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~ 207 (446)
+.+.++.++..+ .+++..+...|+.+|..++...+........+..+.|..++...++.+|..++.++.+++..+++..
T Consensus 117 ~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 117 DNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred CccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 899999999999 8899999999999999999886544444456668999999998888999999999999999999999
Q ss_pred HHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHH-----HHHHHHHHHH
Q 043676 208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEI-----IKKEISWIIS 282 (446)
Q Consensus 208 ~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----v~~~a~~~l~ 282 (446)
..+.+.|+++.++..++++|.-++..++.++..++. .+...+.+.+.|+++.+..++.+..... .-...+...+
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 888999999999999999888899999999999999 6677888899999999999997652222 1223345666
Q ss_pred HHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHH-HHcC-----ChHHHHhcccCCCH
Q 043676 283 NITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHL-VREG-----CVKPLCDLLLCSDP 356 (446)
Q Consensus 283 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l-~~~~-----~i~~L~~ll~~~~~ 356 (446)
+++...+....... ..++..+.+++.+.|+..+..|..+++.++. ..+....+ ...+ ++..+.....+...
T Consensus 275 ~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~ 351 (503)
T PF10508_consen 275 NLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST 351 (503)
T ss_pred HHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence 77654343332222 2466677788888999999999999999986 45666555 2221 35555555667788
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhC--hHH-HHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043676 357 EIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAG--GLE-KIENLQSHDNNEIHEKSVKIFKTYWC 426 (446)
Q Consensus 357 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~-~l~~l~~~~~~~v~~~a~~~l~~~~~ 426 (446)
+++.+++.++.+++...+..... ...+.....+...+ ... .+..+...+-++++-.+..++..+..
T Consensus 352 ~lk~r~l~al~~il~~~~~~~~~----~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 352 ELKLRALHALASILTSGTDRQDN----DILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA 420 (503)
T ss_pred HHHHHHHHHHHHHHhcCCCCchH----HHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 99999999999998766541100 00011112222222 223 56777888889999888888776643
No 15
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.79 E-value=3.1e-16 Score=134.37 Aligned_cols=403 Identities=12% Similarity=0.044 Sum_probs=295.8
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC------CChHHHHHHHHHHHHHcCC
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRE------DYPQLQYEAAWVLINIASG 76 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~------~~~~~~~~a~~~L~~l~~~ 76 (446)
.++.|.+...|++..+-.+..++|.|++..+ ++.+..+.+.|+-..+++.|+.- ...+.-..+...|.|..-+
T Consensus 88 ~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~ 166 (604)
T KOG4500|consen 88 ALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILD 166 (604)
T ss_pred HHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCC
Confidence 4667788888999999999999999998876 78888999999977777777642 2245666677889999988
Q ss_pred ChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCC-hHHHHHHHHcCChHHHHHHhccccchhHHHHHHH
Q 043676 77 TSENTNVVIDHGAVPIFVKLLSS--PSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAELNEHAKLSMLRNATR 153 (446)
Q Consensus 77 ~~~~~~~~~~~~~i~~L~~~L~~--~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~ 153 (446)
+.+.+...++.|+++.|...+.- .+....+..+....|+.+.- +...+...+......+++++.....+++.+.+..
T Consensus 167 ~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~fe 246 (604)
T KOG4500|consen 167 SRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFE 246 (604)
T ss_pred cHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHH
Confidence 99999999999999999988754 56666666666666665322 2233445555667788888877778899999999
Q ss_pred HHHHhhcCCCCCChhhhhhhHHHHHHhhcC-CC-------HhHHHHHHHHHHHhccCCcHHHHHHHHhC-cHHHHHHhcC
Q 043676 154 TLSNFCRGKPEPPFDQVRPALPALAQLVHS-ND-------EDVLTYACWSLSYLADGTNDKIQAVIEAG-VCPRLVELLG 224 (446)
Q Consensus 154 ~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~-~~-------~~v~~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~l~~ll~ 224 (446)
.|...++++...-.....|.+..+..+++. .+ -.....++..+.-+..+++ ..+.+...+ +++.+...+.
T Consensus 247 ila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 247 ILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDE-SMQKLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHhc
Confidence 999999987555555667888888888875 21 2223334444444444444 445566655 8999999999
Q ss_pred CCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccC----chHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 043676 225 HPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHN----HEEIIKKEISWIISNITAGNREQIQAVIDAGL 300 (446)
Q Consensus 225 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 300 (446)
+++......+.-+++|+++.+ .....+++.+++..+++++... .+.+++..++.+|.|+.- +..+...++..|+
T Consensus 326 S~d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I-Pv~nka~~~~aGv 403 (604)
T KOG4500|consen 326 SDDSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI-PVSNKAHFAPAGV 403 (604)
T ss_pred CCchhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc-cCCchhhccccch
Confidence 999999999999999999954 5666788999999999998541 156788889999999965 3445567888999
Q ss_pred hHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHH-HcCChHHHHhcccCCCHH-HHHHHHHHHHHHHHhhhhhhc
Q 043676 301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLV-REGCVKPLCDLLLCSDPE-IVTVCLIGLENILKVGEAERN 378 (446)
Q Consensus 301 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~-~~~~~~~~l~~l~~~~~~~~~ 378 (446)
.+.++..++...|++...-+..+.-+.... +-....+. ....++.|++--+++|.. +.-.....+.-+++....
T Consensus 404 teaIL~~lk~~~ppv~fkllgTlrM~~d~q-e~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~--- 479 (604)
T KOG4500|consen 404 TEAILLQLKLASPPVTFKLLGTLRMIRDSQ-EYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKY--- 479 (604)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhch-HHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHh---
Confidence 999999999999999999888888765532 21222222 223466666666666654 666666777776665333
Q ss_pred ccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHH
Q 043676 379 MGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421 (446)
Q Consensus 379 ~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l 421 (446)
++....+-++||++....+....+-.++..|...+
T Consensus 480 --------kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal 514 (604)
T KOG4500|consen 480 --------KDVILTVPKSGGIKEKVSMFTKNHINMQNEALVAL 514 (604)
T ss_pred --------hhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHH
Confidence 22467777899999988888888777777665444
No 16
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.78 E-value=1.3e-16 Score=154.32 Aligned_cols=362 Identities=18% Similarity=0.187 Sum_probs=275.4
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC--ChHHHHHHHHHHHHHcCCChhhHHHH
Q 043676 7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRED--YPQLQYEAAWVLINIASGTSENTNVV 84 (446)
Q Consensus 7 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~ 84 (446)
+..++...|. ....+.|..+.+. .+.+..+...|.++.|++++.-++ ..+.+..|-.+|.||....++.+..-
T Consensus 202 llsml~t~D~---ee~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~R 276 (2195)
T KOG2122|consen 202 LLSMLGTDDE---EEMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGR 276 (2195)
T ss_pred HhhhcccCCH---HHHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhH
Confidence 4445555554 3344555555554 566778889999999999998655 25788889999999998666544333
Q ss_pred HhcCChHHHHH----------hhCC-------CCHHHHH-HHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccc----
Q 043676 85 IDHGAVPIFVK----------LLSS-------PSDDVRE-QAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEH---- 142 (446)
Q Consensus 85 ~~~~~i~~L~~----------~L~~-------~~~~v~~-~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~---- 142 (446)
.+..++..|-+ .+.. ...+-+. .|+.+|..++ ..+++|..+.+.|++..+-.++..+
T Consensus 277 RE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vDh~mh 355 (2195)
T KOG2122|consen 277 REKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVDHEMH 355 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 33233333221 1221 1122233 6666777777 5677899999999999998877321
Q ss_pred -------cchhHHHHHHHHHHHhhcCC--CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHH-HHH
Q 043676 143 -------AKLSMLRNATRTLSNFCRGK--PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQA-VIE 212 (446)
Q Consensus 143 -------~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~-~~~ 212 (446)
....+++++..+|.||..++ ......-..|++..++..|.+..+++..-...+|.||+...+..... +.+
T Consensus 356 gp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE 435 (2195)
T KOG2122|consen 356 GPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRE 435 (2195)
T ss_pred CCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHh
Confidence 13478999999999999887 23334445899999999999998899999999999999776655444 555
Q ss_pred hCcHHHHHHhcCC-CCccchhHHHHHHHHhhcCCchhhHHHH-hcCChHHHHHHhccCc---hHHHHHHHHHHHHHHhc-
Q 043676 213 AGVCPRLVELLGH-PSPSVLTPALRTVGNIVTGDDFQTQCII-NHGAVPYLLDMLVHNH---EEIIKKEISWIISNITA- 286 (446)
Q Consensus 213 ~~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~~~~~l~~~l~~~~---~~~v~~~a~~~l~~l~~- 286 (446)
.|-+..|+...-. ..+......+.+||||+.++.++...+. -.|.+..|+.+|.... .-.+.+.+..+|.|+..
T Consensus 436 ~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~ 515 (2195)
T KOG2122|consen 436 TGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSL 515 (2195)
T ss_pred hhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhH
Confidence 6888888777544 5557788899999999998888777776 4688999999997542 34566778888888765
Q ss_pred --CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHH
Q 043676 287 --GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLI 364 (446)
Q Consensus 287 --~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~ 364 (446)
.++..++.+.+++++..|+..|++.+..+..++|.+|+||+.. +++..+.|.+.|.++.|..++++++..+..-+..
T Consensus 516 IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaa 594 (2195)
T KOG2122|consen 516 IATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAA 594 (2195)
T ss_pred hhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHH
Confidence 4677778888999999999999999999999999999999887 5777788999999999999999999999999999
Q ss_pred HHHHHHHhhhh
Q 043676 365 GLENILKVGEA 375 (446)
Q Consensus 365 ~l~~l~~~~~~ 375 (446)
+|.|++.+-+.
T Consensus 595 ALrNLln~RPA 605 (2195)
T KOG2122|consen 595 ALRNLLNFRPA 605 (2195)
T ss_pred HHHHHhcCCch
Confidence 99999887643
No 17
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.78 E-value=4.5e-17 Score=139.39 Aligned_cols=378 Identities=15% Similarity=0.120 Sum_probs=268.0
Q ss_pred CCHHHHHHHHHHHHHHhcCC--CCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChH
Q 043676 14 DDNSLQLEATTLSRKLLSFD--RNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVP 91 (446)
Q Consensus 14 ~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 91 (446)
.+..++.....+++..+..+ ++..++.-++.+++..|.+...+++ .++..++.++|+|++..+.+.|..+.+.|+-.
T Consensus 54 ~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq 132 (604)
T KOG4500|consen 54 ASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQ 132 (604)
T ss_pred ccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence 34455666666666655432 1112333455677888888888887 79999999999999999999999999999988
Q ss_pred HHHHhhCC-------CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc-ccchhHHHHHHHHHHHhhcCC-
Q 043676 92 IFVKLLSS-------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE-HAKLSMLRNATRTLSNFCRGK- 162 (446)
Q Consensus 92 ~L~~~L~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~~- 162 (446)
.+++.|+. .+.+....+...+.|..-++.+.+..+.+.|+++++...+.- ..+...-+..+..+.++.+-.
T Consensus 133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~ 212 (604)
T KOG4500|consen 133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC 212 (604)
T ss_pred ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence 88888764 234667778889999999999999999999999999887732 223333344333333332221
Q ss_pred -CCCChhhhhhhHHHHHHhhcCC-CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCccch-------h
Q 043676 163 -PEPPFDQVRPALPALAQLVHSN-DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-PSPSVL-------T 232 (446)
Q Consensus 163 -~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~-------~ 232 (446)
..........+...+++++... .+++++.++..+...+.++.-. -.+.+.|.+..++.+++. ++..-+ .
T Consensus 213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k 291 (604)
T KOG4500|consen 213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFK 291 (604)
T ss_pred HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHHHH
Confidence 0122333345566667777644 6788889999999988876643 347888999999999877 332222 2
Q ss_pred HHHHHHHHhhcCCchhhHHHHhcC-ChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-
Q 043676 233 PALRTVGNIVTGDDFQTQCIINHG-AVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN- 310 (446)
Q Consensus 233 ~a~~~l~~l~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~- 310 (446)
.++..+.-+..+++ ..+.+...+ +++.+.+++.+. +....-.+..+++|+++.+. ...++++.+++..|++++..
T Consensus 292 ~~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~ 368 (604)
T KOG4500|consen 292 RIAELDVLLLTGDE-SMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQE 368 (604)
T ss_pred hhhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHh
Confidence 23333333444443 334455444 899999999999 99999999999999987654 45667888999999998864
Q ss_pred ----CCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCcc
Q 043676 311 ----AEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDV 386 (446)
Q Consensus 311 ----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 386 (446)
++.+++..++.||.|+... ..+...+...|+.+.+..+++...|++...-+..+.-+....+..
T Consensus 369 ~~vdgnV~~qhA~lsALRnl~IP--v~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~---------- 436 (604)
T KOG4500|consen 369 KDVDGNVERQHACLSALRNLMIP--VSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYI---------- 436 (604)
T ss_pred cCCCccchhHHHHHHHHHhcccc--CCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHH----------
Confidence 4678899999999999873 456677889999999999999999999999888888766544422
Q ss_pred chHHHHHHHhChHHHHHHhhcCCC
Q 043676 387 NQYAQFVEEAGGLEKIENLQSHDN 410 (446)
Q Consensus 387 ~~~~~~l~~~~~~~~l~~l~~~~~ 410 (446)
..+....-..+++|.+.-.+++
T Consensus 437 --a~eL~kn~~l~ekLv~Wsks~D 458 (604)
T KOG4500|consen 437 --ACELAKNPELFEKLVDWSKSPD 458 (604)
T ss_pred --HHHHhcCHHHHHHHHHhhhCCc
Confidence 1333333344555555555543
No 18
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=6.8e-16 Score=134.17 Aligned_cols=378 Identities=19% Similarity=0.126 Sum_probs=289.3
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHH
Q 043676 15 DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFV 94 (446)
Q Consensus 15 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 94 (446)
...+...|...|.+++.. ......+....++..|++.|+.++ .++.......|..++- -.+++..+.+.|++..|+
T Consensus 276 QeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~ 351 (791)
T KOG1222|consen 276 QEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLL 351 (791)
T ss_pred HHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHH
Confidence 345566788888898876 344556778899999999999999 7999999999999987 678899999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhH
Q 043676 95 KLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPAL 174 (446)
Q Consensus 95 ~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 174 (446)
++....+++++...+..+.|++.+.. .+..++..|.+|.+..++..+.. ..-|+..++.++.++....+.....++
T Consensus 352 klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~dD~~K~MfayTdci 427 (791)
T KOG1222|consen 352 KLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSCDDDAKAMFAYTDCI 427 (791)
T ss_pred HhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhccCcHHHHHHHHHHHH
Confidence 99999999999999999999996654 67889999999999999944332 345677888888888777778889999
Q ss_pred HHHHHhhc-CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh-cCCCCccchhHHHHHHHHhhcCCchhhHHH
Q 043676 175 PALAQLVH-SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVEL-LGHPSPSVLTPALRTVGNIVTGDDFQTQCI 252 (446)
Q Consensus 175 ~~l~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~l-l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 252 (446)
+.++..+- ..+.++-...+....|++-+.. +.+.+.+...+..|+.. ++..++ .-...+.|++.+.......+
T Consensus 428 ~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn~F 502 (791)
T KOG1222|consen 428 KLLMKDVLSGTGSEVDLALIALCINLCLNKR-NAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQNMF 502 (791)
T ss_pred HHHHHHHHhcCCceecHHHHHHHHHHHhccc-cceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHHHH
Confidence 99887654 4466666666666667776544 34446666666766654 333333 24567888888776666556
Q ss_pred HhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--CcchHHHHHHHHHHhccCC
Q 043676 253 INHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA--EFDTKKEAAWAISNATSGG 330 (446)
Q Consensus 253 ~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~ 330 (446)
++ .+..+..+++...+...-.++.++++|+...+-+....+.+.+.+|-+-..++.+ ..++.-....+++.++.
T Consensus 503 id--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-- 578 (791)
T KOG1222|consen 503 ID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-- 578 (791)
T ss_pred HH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh--
Confidence 54 5677788887665778889999999999775555555566778999999888865 45677788888888887
Q ss_pred CHHHHHHHHHcCChHHHHhcccC--CCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcC
Q 043676 331 TQEQIKHLVREGCVKPLCDLLLC--SDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSH 408 (446)
Q Consensus 331 ~~~~~~~l~~~~~i~~L~~ll~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~ 408 (446)
+......+...++++.++++|+. .|.+.+...+..+.+++...... .-++.+...-..+..|+++
T Consensus 579 d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr-------------~~miket~~~AylIDLMHD 645 (791)
T KOG1222|consen 579 DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTR-------------RLMIKETALGAYLIDLMHD 645 (791)
T ss_pred hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH-------------HHHHhhccchHHHHHHHhc
Confidence 45666677788999999999965 45667777777788877764332 4677777778889999999
Q ss_pred CCHHHHHHHHHHHH
Q 043676 409 DNNEIHEKSVKIFK 422 (446)
Q Consensus 409 ~~~~v~~~a~~~l~ 422 (446)
.|.++++-+...+.
T Consensus 646 kN~eiRkVCDn~Ld 659 (791)
T KOG1222|consen 646 KNAEIRKVCDNALD 659 (791)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999876554443
No 19
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=8.7e-16 Score=127.48 Aligned_cols=312 Identities=12% Similarity=0.119 Sum_probs=255.2
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC-CChHHHHHHHHHHHHHcCCChhhHHHHHhcCC
Q 043676 11 VWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRE-DYPQLQYEAAWVLINIASGTSENTNVVIDHGA 89 (446)
Q Consensus 11 l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 89 (446)
-.+++..+...++.+|..+..+. ..+.+..++..++.+|... +..++....+.++..-+..++.+|+.+++.++
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~q-----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~i 190 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQ-----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKI 190 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCC-----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhH
Confidence 34678888899999988776653 2356677899999988643 23688888889999988889999999999999
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCh---------HHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 043676 90 VPIFVKLLSS-PSDDVREQAVWALGNVAGDSP---------RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFC 159 (446)
Q Consensus 90 i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~---------~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 159 (446)
++.+...|.. ....+.+...|+++-+..+++ .....+...|++..|+..+.-.-++.+...++.+|..++
T Consensus 191 l~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA 270 (461)
T KOG4199|consen 191 LELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALA 270 (461)
T ss_pred HHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHH
Confidence 9999977765 344577788999998886543 345667788889999999976778999999999999998
Q ss_pred cCCCCCChhhhhhhHHHHHHhhcCC-CHh---HHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCccchhH
Q 043676 160 RGKPEPPFDQVRPALPALAQLVHSN-DED---VLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLTP 233 (446)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~ll~~~-~~~---v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~~~~~ 233 (446)
-.......+...|++..+++++.+. +.. ....++..|..++.++. ....+++.|+.+.++.++.. .+|.+...
T Consensus 271 Vr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Ds-vKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~ 349 (461)
T KOG4199|consen 271 VRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDS-VKSTIVEKGGLDKIITLALRHSDDPLVIQE 349 (461)
T ss_pred HHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCc-hHHHHHHhcChHHHHHHHHHcCCChHHHHH
Confidence 8776666677789999999999874 333 55678888888887766 45568888999999988765 67889999
Q ss_pred HHHHHHHhhcCCchhhHHHHhcCChHHHHHHhc-cCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC
Q 043676 234 ALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLV-HNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAE 312 (446)
Q Consensus 234 a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 312 (446)
++.+++-++-..|+....+++.|+-...++.++ ++....++..|+|.+.|++..+.++...++. .+++.|+...+..+
T Consensus 350 ~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~-~GiE~Li~~A~~~h 428 (461)
T KOG4199|consen 350 VMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA-NGIEKLIRTAKANH 428 (461)
T ss_pred HHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh-ccHHHHHHHHHhcC
Confidence 999999999999999999999999999999886 4546789999999999999988888777777 56788888888889
Q ss_pred cchHHHHHHHHHHhccC
Q 043676 313 FDTKKEAAWAISNATSG 329 (446)
Q Consensus 313 ~~v~~~a~~aL~~l~~~ 329 (446)
+.....|-.+|..+-..
T Consensus 429 ~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 429 ETCEAAAKAALRDLGCD 445 (461)
T ss_pred ccHHHHHHHHHHhcCcc
Confidence 99999999999988653
No 20
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3.2e-15 Score=130.01 Aligned_cols=359 Identities=16% Similarity=0.168 Sum_probs=278.7
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
.+..|++.|..++.++.......|.++.-. .++...+.+.|++..|++++.... ++++...+..+.|++. +...+.
T Consensus 305 iV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D~glr~ 380 (791)
T KOG1222|consen 305 IVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-DSGLRP 380 (791)
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-cccccH
Confidence 456788999999999999999999998776 567788999999999999999999 8999999999999998 788999
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK 162 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 162 (446)
.++..|.+|.+..++.+.. -...|+..++.++.+. ..+..+....+++.+++.+....+.++-...+....|+|.+.
T Consensus 381 KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk 457 (791)
T KOG1222|consen 381 KMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK 457 (791)
T ss_pred HHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence 9999999999999997643 3345677888888554 356677777889998888767777777777777778999888
Q ss_pred CCCChhhhhhhHHHHHHh-hcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHH
Q 043676 163 PEPPFDQVRPALPALAQL-VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGN 240 (446)
Q Consensus 163 ~~~~~~~~~~~~~~l~~l-l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~ 240 (446)
.+........++..|+.. ++..|+- ....+.+++.+.......++ +.+..|...++. +++.....++++++|
T Consensus 458 RNaQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~Fi--dyvgdLa~i~~nd~~E~F~~EClGtlan 531 (791)
T KOG1222|consen 458 RNAQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMFI--DYVGDLAGIAKNDNSESFGLECLGTLAN 531 (791)
T ss_pred ccceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhccchHHHHHH--HHHHHHHHHhhcCchHHHHHHHHHHHhh
Confidence 777777777777777654 4444543 34567888888765555455 456667777766 455567789999999
Q ss_pred hhcCCchhhHHHHhcCChHHHHHHhccCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--CcchHH
Q 043676 241 IVTGDDFQTQCIINHGAVPYLLDMLVHNH-EEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA--EFDTKK 317 (446)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~ 317 (446)
|.-..-+....+-+.+++|.+-..|+.+. ..++....+-+++.++. .......+...++++.++++++.. +.+...
T Consensus 532 L~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~ 610 (791)
T KOG1222|consen 532 LKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-DLDCARLLAPAKLIDTLIELLQACQEDDEFVV 610 (791)
T ss_pred cccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-hhHHHHHhCccccHHHHHHHHHhhcccchHHH
Confidence 99877777777778899999999987642 34566666777777754 345555666789999999999874 678888
Q ss_pred HHHHHHHHhccCCCHHHHHHHH-HcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 043676 318 EAAWAISNATSGGTQEQIKHLV-REGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAER 377 (446)
Q Consensus 318 ~a~~aL~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~ 377 (446)
..+.+...+..+ +..+..++ +...-..+++++++.+.+++..|-.+|.-+...++...
T Consensus 611 QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWA 669 (791)
T KOG1222|consen 611 QIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWA 669 (791)
T ss_pred HHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHH
Confidence 888888888875 34444444 45567789999999999999999999988877666554
No 21
>PRK09687 putative lyase; Provisional
Probab=99.74 E-value=5.9e-16 Score=133.04 Aligned_cols=256 Identities=15% Similarity=0.113 Sum_probs=203.7
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676 45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD 124 (446)
Q Consensus 45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~ 124 (446)
--++.|.++|.+++ ..++..|++.|..+.. ..+++.+..++.++++.+|..++++|+.+-.....
T Consensus 23 ~~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 23 LNDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred ccHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---
Confidence 35888999999999 8999999999998865 23578888899999999999999999998642211
Q ss_pred HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCc
Q 043676 125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTN 204 (446)
Q Consensus 125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~ 204 (446)
....++.|..++.+++++.++..++.+|++++...... ....++.+...+.++++.+|..++++|+.+.. +
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~ 158 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E 158 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H
Confidence 11245677777558889999999999999997554211 23456677788888899999999999986532 1
Q ss_pred HHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHH
Q 043676 205 DKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNI 284 (446)
Q Consensus 205 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l 284 (446)
..++.|+.++.++++.+|..|+.+|+.+...++ ..++.|+..+.+. +..||..|+++|+.+
T Consensus 159 ---------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 159 ---------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHcc
Confidence 467889999999999999999999999944333 2457789999988 999999999999987
Q ss_pred hcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhccc-CCCHHHHHHHH
Q 043676 285 TAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL-CSDPEIVTVCL 363 (446)
Q Consensus 285 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~~~ 363 (446)
+++ ..++.|++.+++++ ++..++.+|+++.. +. .++.|..+++ ++|+.++..+.
T Consensus 220 --~~~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~---~~---------a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 220 --KDK---------RVLSVLIKELKKGT--VGDLIIEAAGELGD---KT---------LLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred --CCh---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC---Hh---------HHHHHHHHHhhCCChhHHHHHH
Confidence 333 37899999998755 77889999999864 21 5788888886 78999999999
Q ss_pred HHHHH
Q 043676 364 IGLEN 368 (446)
Q Consensus 364 ~~l~~ 368 (446)
+++..
T Consensus 275 ~a~~~ 279 (280)
T PRK09687 275 DKLKR 279 (280)
T ss_pred HHHhc
Confidence 88764
No 22
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=7.1e-15 Score=122.16 Aligned_cols=318 Identities=16% Similarity=0.192 Sum_probs=251.3
Q ss_pred hcCCHHHHHHhh---cCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhC
Q 043676 43 QSGVVPRFVEFL---MREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS--PSDDVREQAVWALGNVAG 117 (446)
Q Consensus 43 ~~~~~~~L~~ll---~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~--~~~~v~~~a~~~l~~l~~ 117 (446)
..|..+.++.++ .+++ ..+-..++.+|..+....|+ +.+..++..++++|.. ++.++....+..+..-|.
T Consensus 102 ~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~ 176 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI 176 (461)
T ss_pred cCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 456666665544 3455 67888888898888875555 4556778999998865 667888888888888888
Q ss_pred CChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC----------ChhhhhhhHHHHHHhhcCC-CH
Q 043676 118 DSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEP----------PFDQVRPALPALAQLVHSN-DE 186 (446)
Q Consensus 118 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~----------~~~~~~~~~~~l~~ll~~~-~~ 186 (446)
.++.+|+.+++.++++.+...+..+....+.+.++|++..|..+++.+ ..+...+++..|+..++.. +|
T Consensus 177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP 256 (461)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence 888899999999999999988866666689999999999998776332 1223356778888888855 79
Q ss_pred hHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC-Cccch---hHHHHHHHHhhcCCchhhHHHHhcCChHHHH
Q 043676 187 DVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHP-SPSVL---TPALRTVGNIVTGDDFQTQCIINHGAVPYLL 262 (446)
Q Consensus 187 ~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~~---~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~ 262 (446)
.+...++.+|..++-.++ ..+.+.+.|+++.++.++.+. +...| ..++..|..++- ++.....+++.|+.+.++
T Consensus 257 ~~L~~l~~tl~~lAVr~E-~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii 334 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAVRDE-ICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKII 334 (461)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHH
Confidence 999999999999998644 677899999999999999983 33333 567777777775 667788899999999998
Q ss_pred HHh-ccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--CcchHHHHHHHHHHhccCCCHHHHHHHH
Q 043676 263 DML-VHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA--EFDTKKEAAWAISNATSGGTQEQIKHLV 339 (446)
Q Consensus 263 ~~l-~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~ 339 (446)
.++ ++..++.+..+++.+++-++...|+.-..+++.|+-...++.++.. ...++++|++.+.|+... +.+++..++
T Consensus 335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~~~~~~~l 413 (461)
T KOG4199|consen 335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SAENRTILL 413 (461)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hhhccchHH
Confidence 876 4444889999999999999988899989999999998888888864 457999999999999987 456666655
Q ss_pred HcCChHHHHhcccCCCHHHHHHHHHHHHHH
Q 043676 340 REGCVKPLCDLLLCSDPEIVTVCLIGLENI 369 (446)
Q Consensus 340 ~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l 369 (446)
.. +++.|+..-...++.....+-.+|..+
T Consensus 414 ~~-GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 414 AN-GIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred hc-cHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 54 689998888888888777766666654
No 23
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.73 E-value=9.7e-16 Score=141.80 Aligned_cols=360 Identities=15% Similarity=0.151 Sum_probs=253.8
Q ss_pred CCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCC-CcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChh
Q 043676 1 LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRN-PPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSE 79 (446)
Q Consensus 1 ~~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 79 (446)
+|+||.|+.+|.+.+.+++.+|+++|+|+..+... ++...+.+.++++.++++|....+.+++.....+|.|+++ ++.
T Consensus 274 lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS-~D~ 352 (717)
T KOG1048|consen 274 LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSS-NDA 352 (717)
T ss_pred hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccc-hhH
Confidence 58999999999999999999999999999887522 3566788889999999999973337999999999999998 555
Q ss_pred hHHHHHhcCChHHHHHhhCC----------C----CHHHHHHHHHHHHHhhCCChHHHHHHHHc-CChHHHHHHhc----
Q 043676 80 NTNVVIDHGAVPIFVKLLSS----------P----SDDVREQAVWALGNVAGDSPRCRDLVLSQ-GALIPLLAELN---- 140 (446)
Q Consensus 80 ~~~~~~~~~~i~~L~~~L~~----------~----~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~l~~~l~---- 140 (446)
.+..++.. .+..|..-+-. + ..++..++..+|.|++....+.|+.+.+. |.|..|+..+.
T Consensus 353 lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~ 431 (717)
T KOG1048|consen 353 LKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQ 431 (717)
T ss_pred HHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 66555543 46666654322 1 25678899999999998777777777664 56888887773
Q ss_pred -cccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHh---hcCCCHhHHHHHHHHHHHhccC--------------
Q 043676 141 -EHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL---VHSNDEDVLTYACWSLSYLADG-------------- 202 (446)
Q Consensus 141 -~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~l---l~~~~~~v~~~~~~~l~~l~~~-------------- 202 (446)
...+....+++...+.|++-.-... ......+.+... .....+. ....|++.-...
T Consensus 432 ~~~~d~K~VENcvCilRNLSYrl~~E---vp~~~~~~~~~~~~~~~~~~~~---~~~gcf~~k~~k~~~~~~~~~~pe~~ 505 (717)
T KOG1048|consen 432 KSDLDSKSVENCVCILRNLSYRLEAE---VPPKYRQVLANIARLPGVGPPA---ESVGCFGFKKRKSDDNCDDLPIPERA 505 (717)
T ss_pred hccccchhHHHHHHHHhhcCchhhhh---cCHhhhhHhhcccccccCCCcc---cccccccchhhhchhcccccCCcccc
Confidence 2346677899999999997653211 111111111100 0000100 222222222211
Q ss_pred -CcHHHHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHHhhcCCchh----hHHH-HhcCChHHHHHHhccCchHHHHH
Q 043676 203 -TNDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGNIVTGDDFQ----TQCI-INHGAVPYLLDMLVHNHEEIIKK 275 (446)
Q Consensus 203 -~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~----~~~~-~~~~~~~~l~~~l~~~~~~~v~~ 275 (446)
.+.-...+....++..-..++.. .++.+.+.++.+|.|++.+.... +..+ .+..+++.++++++.+ +..+..
T Consensus 506 ~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~ 584 (717)
T KOG1048|consen 506 TAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVR 584 (717)
T ss_pred cCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHH
Confidence 11111123344455554445543 56678899999999999776433 2333 4778999999999999 999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC------CcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHh
Q 043676 276 EISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA------EFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCD 349 (446)
Q Consensus 276 ~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ 349 (446)
.++.+|.|++.+ ... +.++..++++.|++.+... +.++...++.+|.++... +..+.+.+.+.++++.|+.
T Consensus 585 s~a~~LrNls~d-~rn-k~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~ 661 (717)
T KOG1048|consen 585 SAAGALRNLSRD-IRN-KELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLRL 661 (717)
T ss_pred HHHHHHhhhccC-chh-hhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHHH
Confidence 999999999764 333 4455578999999999764 257888999999999865 6788899999999999999
Q ss_pred cccCC-CHHHHHHHHHHHHHHHHh
Q 043676 350 LLLCS-DPEIVTVCLIGLENILKV 372 (446)
Q Consensus 350 ll~~~-~~~~~~~~~~~l~~l~~~ 372 (446)
+..+. ++...+.+...|..+=..
T Consensus 662 I~~s~~S~k~~kaAs~vL~~lW~y 685 (717)
T KOG1048|consen 662 ISKSQHSPKEFKAASSVLDVLWQY 685 (717)
T ss_pred HhcccCCHHHHHHHHHHHHHHHHH
Confidence 98764 557777777777775443
No 24
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.73 E-value=3.3e-16 Score=151.71 Aligned_cols=325 Identities=17% Similarity=0.167 Sum_probs=248.8
Q ss_pred CChHHHHHhhcCC---CHHHHHHHHHHHHHHhcCCCCCc--HHHHHhcCCHHHHH-------HhhcCC------CChHHH
Q 043676 2 GSFPALVAGVWSD---DNSLQLEATTLSRKLLSFDRNPP--IEKVIQSGVVPRFV-------EFLMRE------DYPQLQ 63 (446)
Q Consensus 2 ~~i~~l~~~l~s~---~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~~~~~~L~-------~ll~~~------~~~~~~ 63 (446)
|-+|.|+++|... +.+.+..|-.+|.++......+. ++++--.-++..+. .+++.. ...+-+
T Consensus 235 gCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~ 314 (2195)
T KOG2122|consen 235 GCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQ 314 (2195)
T ss_pred cchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchh
Confidence 6789999999853 56888889999999887642222 22221111222111 122221 112233
Q ss_pred H-HHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC------------CCHHHHHHHHHHHHHhhCCChHHHHH-HHHc
Q 043676 64 Y-EAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS------------PSDDVREQAVWALGNVAGDSPRCRDL-VLSQ 129 (446)
Q Consensus 64 ~-~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~------------~~~~v~~~a~~~l~~l~~~~~~~~~~-~~~~ 129 (446)
. .|+.+|.+++. ++++|..+.+.|++.++-.++.- ....+|.++..+|.||..+...++.. +...
T Consensus 315 lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~r 393 (2195)
T KOG2122|consen 315 LCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQR 393 (2195)
T ss_pred hHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhh
Confidence 4 67778888888 89999999999999999987752 23578999999999999777655544 4466
Q ss_pred CChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh--hhhhhHHHHHHh-hcCCCHhHHHHHHHHHHHhccCCcHH
Q 043676 130 GALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFD--QVRPALPALAQL-VHSNDEDVLTYACWSLSYLADGTNDK 206 (446)
Q Consensus 130 ~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~~~~l~~l-l~~~~~~v~~~~~~~l~~l~~~~~~~ 206 (446)
|++..++..| .+...++....+.+|.||+...+..... ...|-+..|+.+ ++...+.....++.+||||+.+..++
T Consensus 394 gfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteN 472 (2195)
T KOG2122|consen 394 GFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTEN 472 (2195)
T ss_pred hHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccccc
Confidence 8899999999 5566688888999999999886333322 234555555554 45567788999999999999887777
Q ss_pred HHHHHHh-CcHHHHHHhcCCC----CccchhHHHHHHHHhh---cCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHH
Q 043676 207 IQAVIEA-GVCPRLVELLGHP----SPSVLTPALRTVGNIV---TGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEIS 278 (446)
Q Consensus 207 ~~~~~~~-~~~~~l~~ll~~~----~~~~~~~a~~~l~~l~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~ 278 (446)
...+... |.+..|+..|... .-.+.+.+-++|.|.+ ..++.+++.+.+.+.+..|++.|++. ...+..++|
T Consensus 473 KA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSNaC 551 (2195)
T KOG2122|consen 473 KAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSNAC 551 (2195)
T ss_pred chhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeecch
Confidence 7666654 8999999999875 3357778888888875 44677888888999999999999998 888999999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccC
Q 043676 279 WIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSG 329 (446)
Q Consensus 279 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 329 (446)
.+|+||...+++..+.+++.|.++.|.+++.+++..+.+-++.+|.|+...
T Consensus 552 GTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 552 GTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred hhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999764
No 25
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=4e-14 Score=136.01 Aligned_cols=387 Identities=15% Similarity=0.171 Sum_probs=265.3
Q ss_pred HHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHH
Q 043676 6 ALVAGVWSD-DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVV 84 (446)
Q Consensus 6 ~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 84 (446)
.++..+.++ .+.+|..-+..++.+++..-.+ .. .++++.|.+..++++ +..|+.|+.+|..+...-...-...
T Consensus 83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~W--Pell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~~~~~ 156 (1075)
T KOG2171|consen 83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KW--PELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNTLQPH 156 (1075)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhcccc---ch--HHHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccccchh
Confidence 455655554 4788888899999888875222 11 257888889999999 8999999999999987222211111
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh---HHHHHHHHcCChHHHHHHhc---cccchhHHHHHHHHHHHh
Q 043676 85 IDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP---RCRDLVLSQGALIPLLAELN---EHAKLSMLRNATRTLSNF 158 (446)
Q Consensus 85 ~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~---~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l 158 (446)
+ ..+.+.+.+.+.+++..+|..++++++.++...+ ..++.+.. .+|.++..+. ...+......++.+|..+
T Consensus 157 ~-~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~--llP~~l~vl~~~i~~~d~~~a~~~l~~l~El 233 (1075)
T KOG2171|consen 157 L-DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRD--LLPSLLNVLQEVIQDGDDDAAKSALEALIEL 233 (1075)
T ss_pred H-HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHH--HhHHHHHHhHhhhhccchHHHHHHHHHHHHH
Confidence 1 1245667777778776699999999999885442 22233222 4666666653 344666678888888888
Q ss_pred hcCCCCCChhhhhhhHHHHHHhhcCC--CHhHHHHHHHHHHHhccCCcHHHHHH--HHh---------------------
Q 043676 159 CRGKPEPPFDQVRPALPALAQLVHSN--DEDVLTYACWSLSYLADGTNDKIQAV--IEA--------------------- 213 (446)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~~~~~l~~l~~~~~~~~~~~--~~~--------------------- 213 (446)
+...+..-......++.....+..+. ++.+|..++.+|..++...+...+.. +..
T Consensus 234 ~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~ 313 (1075)
T KOG2171|consen 234 LESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSN 313 (1075)
T ss_pred HhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcc
Confidence 88765544444556666666666654 57888888888877765533222110 000
Q ss_pred ----------------------------------CcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChH
Q 043676 214 ----------------------------------GVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVP 259 (446)
Q Consensus 214 ----------------------------------~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 259 (446)
-+++.+-.++.+.++.-|..++.+|+.++.++.+.....+. .+++
T Consensus 314 ~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~ 392 (1075)
T KOG2171|consen 314 EDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILP 392 (1075)
T ss_pred ccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHH
Confidence 13344455566677788999999999999998877665443 5788
Q ss_pred HHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-CcchHHHHHHHHHHhccCCCHHHHHHH
Q 043676 260 YLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA-EFDTKKEAAWAISNATSGGTQEQIKHL 338 (446)
Q Consensus 260 ~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l 338 (446)
.++..|+++ ++.||..|+.+++.++..-...++......+.+.|+..+.+. ++.++..|+.++.|++..+.++.....
T Consensus 393 ~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pY 471 (1075)
T KOG2171|consen 393 IVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPY 471 (1075)
T ss_pred HHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 888999999 999999999999999875444455555557888899888875 779999999999999988777666553
Q ss_pred HHcCChH-HHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCC-HHHHHH
Q 043676 339 VREGCVK-PLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDN-NEIHEK 416 (446)
Q Consensus 339 ~~~~~i~-~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~-~~v~~~ 416 (446)
.. +++. .+..++.++.+.+++.+..+|.......+.. ..+|...+ ++.|...+...+ ++.+..
T Consensus 472 Ld-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~---------F~pY~d~~-----Mp~L~~~L~n~~~~d~r~L 536 (1075)
T KOG2171|consen 472 LD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK---------FIPYFDRL-----MPLLKNFLQNADDKDLREL 536 (1075)
T ss_pred HH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh---------hHhHHHHH-----HHHHHHHHhCCCchhhHHH
Confidence 33 3455 4445567788999999999999988776654 23344444 455655544433 444443
Q ss_pred HH
Q 043676 417 SV 418 (446)
Q Consensus 417 a~ 418 (446)
..
T Consensus 537 rg 538 (1075)
T KOG2171|consen 537 RG 538 (1075)
T ss_pred Hh
Confidence 33
No 26
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=6.4e-14 Score=134.66 Aligned_cols=362 Identities=18% Similarity=0.181 Sum_probs=250.7
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCC---hh
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGT---SE 79 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~---~~ 79 (446)
.++.|.+..+|+++..|..|+..|..+...-++.....+. .+.+.+.+.+.+++. .+|..|+++++.++... +.
T Consensus 119 ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~-~vr~~a~rA~~a~~~~~~~~~~ 195 (1075)
T KOG2171|consen 119 LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSS-PVRVAAVRALGAFAEYLENNKS 195 (1075)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHhccchH
Confidence 4677888889999999999999999876643222221111 356677777888884 59999999999988633 33
Q ss_pred hHHHHHhcCChHHHHH----hhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc-cccchhHHHHHHHH
Q 043676 80 NTNVVIDHGAVPIFVK----LLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN-EHAKLSMLRNATRT 154 (446)
Q Consensus 80 ~~~~~~~~~~i~~L~~----~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~ 154 (446)
.+..+. ..+|.++. .+..++.+....++.+|..++...|.+-...+. .++...+.... ++-++.+|..|+.+
T Consensus 196 ~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ 272 (1075)
T KOG2171|consen 196 EVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEF 272 (1075)
T ss_pred HHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHH
Confidence 333333 23454444 444567777788888888888666543222211 02222222221 22245566666665
Q ss_pred HHHhhcCCCC----------------------------------------------------------CChhhhhhhHHH
Q 043676 155 LSNFCRGKPE----------------------------------------------------------PPFDQVRPALPA 176 (446)
Q Consensus 155 L~~l~~~~~~----------------------------------------------------------~~~~~~~~~~~~ 176 (446)
+..+++..|. ........+++.
T Consensus 273 ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~ 352 (1075)
T KOG2171|consen 273 LVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEA 352 (1075)
T ss_pred HHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHH
Confidence 5555443100 001122344556
Q ss_pred HHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcC
Q 043676 177 LAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHG 256 (446)
Q Consensus 177 l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~ 256 (446)
+-.++++.++.-|..++.+|+.++.+..+.....+. .+++.++..+.++++.||..|+.+++.++..-....+......
T Consensus 353 l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~ 431 (1075)
T KOG2171|consen 353 LEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHER 431 (1075)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHh
Confidence 667788999999999999999999998877665444 7888899999999999999999999999988777777777788
Q ss_pred ChHHHHHHhccCchHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCChH-HHHHHHhcCCcchHHHHHHHHHHhccCCCHHH
Q 043676 257 AVPYLLDMLVHNHEEIIKKEISWIISNITAGN-REQIQAVIDAGLIR-PIVNLLQNAEFDTKKEAAWAISNATSGGTQEQ 334 (446)
Q Consensus 257 ~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~-~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~ 334 (446)
+++.++..+.+..+++++..|+.++-|+.... ...+....+ +++. .+..+++++.+.+++.++.+|+.++.......
T Consensus 432 l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F 510 (1075)
T KOG2171|consen 432 LPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKF 510 (1075)
T ss_pred ccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhh
Confidence 88999999998878899999999999998743 333343333 5666 45556667789999999999999998766666
Q ss_pred HHHHHHcCChHHHHhcccCCC----HHHHHHHHHHHHHHHHhhh
Q 043676 335 IKHLVREGCVKPLCDLLLCSD----PEIVTVCLIGLENILKVGE 374 (446)
Q Consensus 335 ~~~l~~~~~i~~L~~ll~~~~----~~~~~~~~~~l~~l~~~~~ 374 (446)
.+++-. .+|.|..++...+ ..++-++.+++.-+-..-.
T Consensus 511 ~pY~d~--~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVG 552 (1075)
T KOG2171|consen 511 IPYFDR--LMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVG 552 (1075)
T ss_pred HhHHHH--HHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhh
Confidence 666554 6888888887654 3466666666665544433
No 27
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.72 E-value=2.3e-14 Score=129.51 Aligned_cols=405 Identities=14% Similarity=0.075 Sum_probs=275.4
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHcCCChhhHHHHHh
Q 043676 8 VAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRED-YPQLQYEAAWVLINIASGTSENTNVVID 86 (446)
Q Consensus 8 ~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 86 (446)
+..+-+.+|+....+.....+++.+. +++...+++.|.++.|+.++...+ .++.+...+.++.....+.......+.+
T Consensus 15 l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~ 93 (678)
T KOG1293|consen 15 LYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLR 93 (678)
T ss_pred HHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHH
Confidence 44555778888888888999988775 555557999999999999998755 2567777777888888878888889999
Q ss_pred cCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChHHH--HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 043676 87 HGAVPIFVKLLSSPS-DDVREQAVWALGNVAGDSPRCR--DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP 163 (446)
Q Consensus 87 ~~~i~~L~~~L~~~~-~~v~~~a~~~l~~l~~~~~~~~--~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 163 (446)
.+.++.++.+|.+++ ..+++.+++++.++.+.++... ........+..+..++ ..+.......-+....+++....
T Consensus 94 ~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~~~ 172 (678)
T KOG1293|consen 94 IIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSSTKD 172 (678)
T ss_pred HhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccccch
Confidence 999999999999988 8899999999999996654211 1111222344444444 22334444445555556666555
Q ss_pred CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHH---HhccCCcHHHHHH----HHhCcHH--HHHHhcCCCCccchhHH
Q 043676 164 EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLS---YLADGTNDKIQAV----IEAGVCP--RLVELLGHPSPSVLTPA 234 (446)
Q Consensus 164 ~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~---~l~~~~~~~~~~~----~~~~~~~--~l~~ll~~~~~~~~~~a 234 (446)
+.......++.+.+.-++...+...|..++.++. ++..+++.....+ ...|+.+ .+..++++++...+..+
T Consensus 173 hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~s 252 (678)
T KOG1293|consen 173 HQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRS 252 (678)
T ss_pred hhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHH
Confidence 5555566788888888888778999999999999 7777766544433 3335555 45666777777777777
Q ss_pred HHHHHHhhcCCch---------------------------------------------------hhHHHHhcCChHHHHH
Q 043676 235 LRTVGNIVTGDDF---------------------------------------------------QTQCIINHGAVPYLLD 263 (446)
Q Consensus 235 ~~~l~~l~~~~~~---------------------------------------------------~~~~~~~~~~~~~l~~ 263 (446)
+.++.++...+.. ......+....+...+
T Consensus 253 l~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~e 332 (678)
T KOG1293|consen 253 LECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTE 332 (678)
T ss_pred HHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHH
Confidence 7777666543300 0000000011111111
Q ss_pred Hh----------------------------------------------------ccCchHHHHHHHHHHHHHHhcCCHHH
Q 043676 264 ML----------------------------------------------------VHNHEEIIKKEISWIISNITAGNREQ 291 (446)
Q Consensus 264 ~l----------------------------------------------------~~~~~~~v~~~a~~~l~~l~~~~~~~ 291 (446)
++ ... +..++..|+-++-+++..-...
T Consensus 333 llf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV~aL 411 (678)
T KOG1293|consen 333 LLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSVSAL 411 (678)
T ss_pred HHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111 2333444444444443321111
Q ss_pred HHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHH
Q 043676 292 IQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILK 371 (446)
Q Consensus 292 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~ 371 (446)
...+-...+..+|++++..++..++..++.+|+|+...-+ .....++..|+++.+.+++.+.++.++..++|+|.+++-
T Consensus 412 ~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f 490 (678)
T KOG1293|consen 412 RTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF 490 (678)
T ss_pred HcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 1113345688999999999999999999999999987633 456677899999999999999999999999999999876
Q ss_pred hhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 043676 372 VGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGR 428 (446)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 428 (446)
.+.... ...+..-=+...|..+.++++..|++.+-.+++++..+.
T Consensus 491 ~~de~~------------k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 491 NCDEEE------------KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred cchHHH------------HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 655543 222222223455788899999999999999999998763
No 28
>PRK09687 putative lyase; Provisional
Probab=99.71 E-value=4.2e-15 Score=127.79 Aligned_cols=254 Identities=15% Similarity=0.125 Sum_probs=198.7
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
.++.|...|.++|..++..+++.|..+-. ..+++.+..++++++ +.+|..|+++|+.+.... ..
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~-~~-- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAK-RC-- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCc-cc--
Confidence 35678899999999999999999986432 145788888899998 899999999999997522 11
Q ss_pred HHHhcCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676 83 VVIDHGAVPIFVKL-LSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG 161 (446)
Q Consensus 83 ~~~~~~~i~~L~~~-L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 161 (446)
....++.|..+ ++++++.||..++.+|++++....... ...+..+...+ .+.+..++..++++|..+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~-----~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYS-----PKIVEQSQITA-FDKSTNVRFAVAFALSVIND- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccc-----hHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence 11346777776 678999999999999999974332110 11234455556 66789999999999976532
Q ss_pred CCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHh
Q 043676 162 KPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241 (446)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l 241 (446)
...++.|+.++.++++.++..++.+|+.+....+ ..++.|+..+.+.++.+|..|++.|+.+
T Consensus 158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 3578999999999999999999999999843333 4457789999999999999999999885
Q ss_pred hcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCCcchHHHHH
Q 043676 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQ-NAEFDTKKEAA 320 (446)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~ 320 (446)
-. + ..++.|+..+.++ + ++..++.+|+++ +++. .+|.|..+++ +.|..++..|.
T Consensus 220 ~~--~---------~av~~Li~~L~~~-~--~~~~a~~ALg~i--g~~~---------a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 220 KD--K---------RVLSVLIKELKKG-T--VGDLIIEAAGEL--GDKT---------LLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred CC--h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhc--CCHh---------HHHHHHHHHhhCCChhHHHHHH
Confidence 43 1 3689999999887 4 678899999998 3342 7889999997 77999999999
Q ss_pred HHHHH
Q 043676 321 WAISN 325 (446)
Q Consensus 321 ~aL~~ 325 (446)
+++..
T Consensus 275 ~a~~~ 279 (280)
T PRK09687 275 DKLKR 279 (280)
T ss_pred HHHhc
Confidence 98864
No 29
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.67 E-value=6.9e-14 Score=140.73 Aligned_cols=275 Identities=19% Similarity=0.190 Sum_probs=218.8
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
.++.|++.|.++++.+|..|+..|..+.. .+.++.|...|.+++ +.+|..|+..|..+....+
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~---- 684 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP---- 684 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC----
Confidence 46789999999999999999999987532 246899999999888 8999999999988854111
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK 162 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 162 (446)
..+.+...|.++++.+|..++..|..+.... ...++..+ .++++.++..++.+|..+-.
T Consensus 685 ------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~-- 743 (897)
T PRK13800 685 ------PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD-- 743 (897)
T ss_pred ------chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC--
Confidence 2357788889999999999999998875322 23456677 78899999999999997621
Q ss_pred CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhh
Q 043676 163 PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV 242 (446)
Q Consensus 163 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~ 242 (446)
.+.+..++.++++.+|..++.+|+.+..... ..++.|..+++++++.+|..|+..|+.+.
T Consensus 744 -----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g 803 (897)
T PRK13800 744 -----------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELG 803 (897)
T ss_pred -----------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 2446778999999999999999998865432 23677889999999999999999999885
Q ss_pred cCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHH
Q 043676 243 TGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWA 322 (446)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 322 (446)
... ...+.+...+.++ ++.||..|+++|+.+.. + ..++.|+.+++++++.||..|+.+
T Consensus 804 ~~~----------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~--~---------~a~~~L~~~L~D~~~~VR~~A~~a 861 (897)
T PRK13800 804 CPP----------DDVAAATAALRAS-AWQVRQGAARALAGAAA--D---------VAVPALVEALTDPHLDVRKAAVLA 861 (897)
T ss_pred Ccc----------hhHHHHHHHhcCC-ChHHHHHHHHHHHhccc--c---------chHHHHHHHhcCCCHHHHHHHHHH
Confidence 421 1235688889888 89999999999998732 2 356889999999999999999999
Q ss_pred HHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHH
Q 043676 323 ISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLEN 368 (446)
Q Consensus 323 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~ 368 (446)
|..+. .++.. .+.|...+++.+++|+..+..+|..
T Consensus 862 L~~~~--~~~~a---------~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 862 LTRWP--GDPAA---------RDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HhccC--CCHHH---------HHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 99972 23332 5567788899999999999988853
No 30
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.64 E-value=5.1e-14 Score=127.29 Aligned_cols=371 Identities=14% Similarity=0.100 Sum_probs=246.2
Q ss_pred CCChHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCCh
Q 043676 1 LGSFPALVAGVWSDD--NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTS 78 (446)
Q Consensus 1 ~~~i~~l~~~l~s~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 78 (446)
+|++|.+...++.++ +..+...+..+...++++ ......+.+.+.++.|++++.+++...++...++++.++.+.++
T Consensus 50 ~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~e-qd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~ 128 (678)
T KOG1293|consen 50 LGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGE-QDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSK 128 (678)
T ss_pred hcchHHHHhhccccCCchhhhhhHHHHHHhHHhhc-cchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhccc
Confidence 478899999988766 455555666666666665 66788899999999999999988856899999999999998443
Q ss_pred hhHHHH--HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHH
Q 043676 79 ENTNVV--IDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLS 156 (446)
Q Consensus 79 ~~~~~~--~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~ 156 (446)
..-... ....++..+..++..+.......-+....+++ ..+..+......|+.+.+.-++ ...+...+..++.+++
T Consensus 129 ~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s-~~~~hq~Il~Na~i~ekI~~l~-~~~s~~~RlaaL~~~s 206 (678)
T KOG1293|consen 129 YQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLS-STKDHQLILCNAGILEKINILL-MYLSSKLRLAALLCLS 206 (678)
T ss_pred ccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccc-ccchhhheeccccchhhHHHHH-HhhhHHHHHHHHHHhh
Confidence 322222 22344455554554244444444455555555 3345566666777766665555 5567788889998888
Q ss_pred ---HhhcCCCCCChhhh-----hhhHH--HHHHhhcCCCHhHHHHHHHHHHHhccCCcH------------H--------
Q 043676 157 ---NFCRGKPEPPFDQV-----RPALP--ALAQLVHSNDEDVLTYACWSLSYLADGTND------------K-------- 206 (446)
Q Consensus 157 ---~l~~~~~~~~~~~~-----~~~~~--~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~------------~-------- 206 (446)
++..+.+...+... .++.+ .+..++++.+..-+..++.++..+...+.+ .
T Consensus 207 r~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~ 286 (678)
T KOG1293|consen 207 RGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQY 286 (678)
T ss_pred ccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHH
Confidence 66666544333222 33333 344555565555555566665555433200 0
Q ss_pred -------------------------------HHHHHHhCcHHHHHHhcC-------------------------------
Q 043676 207 -------------------------------IQAVIEAGVCPRLVELLG------------------------------- 224 (446)
Q Consensus 207 -------------------------------~~~~~~~~~~~~l~~ll~------------------------------- 224 (446)
.....+....+.+.+++.
T Consensus 287 ~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~ 366 (678)
T KOG1293|consen 287 NCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLE 366 (678)
T ss_pred hhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcc
Confidence 000001111111111111
Q ss_pred ---------------------CCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHH
Q 043676 225 ---------------------HPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISN 283 (446)
Q Consensus 225 ---------------------~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~ 283 (446)
..+...+.+|+.++.+++..-...+..+-...+.+++++++.++ +..++..+.++++|
T Consensus 367 i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~N 445 (678)
T KOG1293|consen 367 ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAICN 445 (678)
T ss_pred hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHHHH
Confidence 01223455555566555543333333333557889999999888 99999999999999
Q ss_pred HhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHH
Q 043676 284 ITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCL 363 (446)
Q Consensus 284 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~ 363 (446)
+...-...+..++..|++..+..++.+.++.++..+.|+|.++.-.++......+...-.-..+..+.+++++.|++.|+
T Consensus 446 lVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~f 525 (678)
T KOG1293|consen 446 LVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCF 525 (678)
T ss_pred HHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHH
Confidence 99865666788999999999999999999999999999999999887666655555554566677788999999999999
Q ss_pred HHHHHHHHhhhh
Q 043676 364 IGLENILKVGEA 375 (446)
Q Consensus 364 ~~l~~l~~~~~~ 375 (446)
..+.|+.....+
T Consensus 526 qllRNl~c~~~~ 537 (678)
T KOG1293|consen 526 QLLRNLTCNSRK 537 (678)
T ss_pred HHHHHhhcCcHH
Confidence 999999876443
No 31
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.64 E-value=1.1e-13 Score=116.27 Aligned_cols=240 Identities=19% Similarity=0.194 Sum_probs=185.5
Q ss_pred hhhhhHHHHHHhhcC-CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCch
Q 043676 169 QVRPALPALAQLVHS-NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDF 247 (446)
Q Consensus 169 ~~~~~~~~l~~ll~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~ 247 (446)
...+-++.++.+|+. .|+.+++.++.++++.+..+ .....+.+.|+++.+..++.++++.++..|++++.|++...+.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 345677899999985 58999999999999987654 4566788899999999999999999999999999999875443
Q ss_pred hhHHHHhcCChHHHHHH-hccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHh
Q 043676 248 QTQCIINHGAVPYLLDM-LVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNA 326 (446)
Q Consensus 248 ~~~~~~~~~~~~~l~~~-l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 326 (446)
... ++. .++.+.+. ..++.+..++..++.+|.|++..+ +. ..++. +.++.++.++..++..+|..++++|.|+
T Consensus 88 -~~~-Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~-~~~l~-~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 88 -QEQ-IKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DY-HHMLA-NYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred -HHH-HHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-ch-hhhHH-hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 332 333 45555554 344447789999999999997543 22 23332 4799999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHcCChHHHHhcccCC-CHHHHHHHHHHHHHHHHhhhhhhcccC-CCCccchHHHHHHHhC-hHHHHH
Q 043676 327 TSGGTQEQIKHLVREGCVKPLCDLLLCS-DPEIVTVCLIGLENILKVGEAERNMGT-TIGDVNQYAQFVEEAG-GLEKIE 403 (446)
Q Consensus 327 ~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~~-~~~~l~ 403 (446)
+. ++...+.++..+++..++.+++.. +.++...++..+.++-..-.+...... .-....+....|.+.+ .-+++.
T Consensus 162 S~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~ 239 (254)
T PF04826_consen 162 SE--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQ 239 (254)
T ss_pred cc--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHH
Confidence 98 688899999999999999999875 678888899999998655444422211 1123344557777777 556689
Q ss_pred HhhcCCCHHHHHHH
Q 043676 404 NLQSHDNNEIHEKS 417 (446)
Q Consensus 404 ~l~~~~~~~v~~~a 417 (446)
.+..|++++|+.++
T Consensus 240 ~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 240 ALANHPDPEVKEQV 253 (254)
T ss_pred HHHcCCCHHHhhhc
Confidence 99999999998764
No 32
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.64 E-value=4.9e-14 Score=118.28 Aligned_cols=196 Identities=20% Similarity=0.241 Sum_probs=163.0
Q ss_pred HhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChH
Q 043676 42 IQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR 121 (446)
Q Consensus 42 ~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~ 121 (446)
++.+-++.|+.+|+...+|.+++.+..++++.+. .+..+..+.+.|+++.+..++.++++.+++.|++++.|++...+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e- 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE- 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-
Confidence 5556789999999976559999999999999987 88999999999999999999999999999999999999996554
Q ss_pred HHHHHHHcCChHHHHHHhccc-cchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhc
Q 043676 122 CRDLVLSQGALIPLLAELNEH-AKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLA 200 (446)
Q Consensus 122 ~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~ 200 (446)
.+..+.. .++.++...... .+..++..++.+|.+|+........ ..+.+|.++.++.+++..++..++++|.+++
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~--l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHM--LANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhh--HHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 4444432 466666655333 4788999999999999877543333 3568999999999999999999999999999
Q ss_pred cCCcHHHHHHHHhCcHHHHHHhcCCC-CccchhHHHHHHHHhhcC
Q 043676 201 DGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLTPALRTVGNIVTG 244 (446)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~~~~a~~~l~~l~~~ 244 (446)
.++. ..+.++..+++..++.++... +.++...++..+.|+..+
T Consensus 163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 9855 556688889999999999885 667788999999999654
No 33
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.62 E-value=3.7e-13 Score=135.49 Aligned_cols=277 Identities=14% Similarity=0.171 Sum_probs=218.7
Q ss_pred cCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHH
Q 043676 44 SGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCR 123 (446)
Q Consensus 44 ~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~ 123 (446)
...++.|+..|.+++ +.+|..|+..|+.+.. .+.++.|...|+++++.+|..|+.+|..+....+
T Consensus 620 ~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~--- 684 (897)
T PRK13800 620 APSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP--- 684 (897)
T ss_pred chhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---
Confidence 346789999999999 9999999999998864 2468899999999999999999999988853222
Q ss_pred HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC
Q 043676 124 DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGT 203 (446)
Q Consensus 124 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~ 203 (446)
..+.+...| ++.++.++..++.+|..+.... ...+...+.++++.+|..++.+|+.+-.
T Consensus 685 -------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-- 743 (897)
T PRK13800 685 -------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD-- 743 (897)
T ss_pred -------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC--
Confidence 124666777 6789999999999998874321 2456788999999999999999987521
Q ss_pred cHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHH
Q 043676 204 NDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISN 283 (446)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~ 283 (446)
.+.|..++.++++.+|..++.+|+.+..... ..++.|..+++++ ++.+|..|+.+|++
T Consensus 744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg~ 801 (897)
T PRK13800 744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALAE 801 (897)
T ss_pred ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHHh
Confidence 2346678999999999999999998865322 1367788999998 89999999999998
Q ss_pred HhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHH
Q 043676 284 ITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCL 363 (446)
Q Consensus 284 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~ 363 (446)
+.. +. ...+.+...+.+.++.||..|+.+|..+... ..++.|..+++++++.|+..+.
T Consensus 802 ~g~--~~--------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A~ 859 (897)
T PRK13800 802 LGC--PP--------DDVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAAV 859 (897)
T ss_pred cCC--cc--------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHHH
Confidence 843 21 1345688889999999999999999987421 1468899999999999999999
Q ss_pred HHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHH
Q 043676 364 IGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKT 423 (446)
Q Consensus 364 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 423 (446)
++|..+ ...+. ..+.|...+++++++|+..|.+.|+.
T Consensus 860 ~aL~~~-~~~~~----------------------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 860 LALTRW-PGDPA----------------------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHhcc-CCCHH----------------------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 999885 11111 14456688899999999999988863
No 34
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=4.4e-14 Score=127.53 Aligned_cols=347 Identities=15% Similarity=0.142 Sum_probs=234.5
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHh-
Q 043676 8 VAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVID- 86 (446)
Q Consensus 8 ~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~- 86 (446)
+..+...++.+|-..-..+..+++...-... ..++|.|.++|.+++ ....+-|..+|.+++.++.+.-+.-..
T Consensus 96 l~~lgd~~~lIr~tvGivITTI~s~~~~~~w-----pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~ 169 (885)
T KOG2023|consen 96 LHGLGDASPLIRATVGIVITTIASTGGLQHW-----PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLT 169 (885)
T ss_pred HhhccCchHHHHhhhhheeeeeecccccccc-----hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhccc
Confidence 3344444454444444444444443211111 357999999999999 789999999999999866544332111
Q ss_pred ---cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHc-CChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676 87 ---HGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQ-GALIPLLAELNEHAKLSMLRNATRTLSNFCRGK 162 (446)
Q Consensus 87 ---~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 162 (446)
.-.++.++++.+++++.+|..|+.++..+.-..+.. ..... ..+..+..+- .+.+++++.+.|.++..|..-.
T Consensus 170 rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa--l~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llevr 246 (885)
T KOG2023|consen 170 RPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA--LYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEVR 246 (885)
T ss_pred CchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH--HHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhc
Confidence 135788999999999999999999998887544321 11111 1344444444 7889999999999999999988
Q ss_pred CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHH---hCcHHHHHHhcCCC-------------
Q 043676 163 PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIE---AGVCPRLVELLGHP------------- 226 (446)
Q Consensus 163 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~---~~~~~~l~~ll~~~------------- 226 (446)
+.+-.....++++.+....++.|+++...|+.....++..+.. . .+.. ..++|.|+.-+...
T Consensus 247 ~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~-~-~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD 324 (885)
T KOG2023|consen 247 PDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPIC-K-EVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEED 324 (885)
T ss_pred HHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCc-H-HHHHHHHHHHHHHHHccCccccccHHHhcCcccc
Confidence 8877788899999999999999999999999999999977531 1 1221 15555555543221
Q ss_pred -------------------------------------------CccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHH
Q 043676 227 -------------------------------------------SPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLD 263 (446)
Q Consensus 227 -------------------------------------------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ 263 (446)
++.+|+.++.+|..|+..-... ++. .++|.+-+
T Consensus 325 ~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e---lL~-~l~PlLk~ 400 (885)
T KOG2023|consen 325 ESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE---LLP-ILLPLLKE 400 (885)
T ss_pred ccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH---HHH-HHHHHHHH
Confidence 0345665555555555422221 111 24566666
Q ss_pred HhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHH-HHHHHcC
Q 043676 264 MLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQI-KHLVREG 342 (446)
Q Consensus 264 ~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~-~~l~~~~ 342 (446)
.|.++ +..+|+.++.+++.++.+.-...-.-. ..++|.|+.++.++.+-||..++|+|+..+.....+.. +++..
T Consensus 401 ~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p-- 476 (885)
T KOG2023|consen 401 HLSSE-EWKVREAGVLALGAIAEGCMQGFVPHL-PELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP-- 476 (885)
T ss_pred HcCcc-hhhhhhhhHHHHHHHHHHHhhhcccch-HHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH--
Confidence 67777 999999999999999876433221111 13789999999999999999999999988664322222 22222
Q ss_pred ChHHHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676 343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVG 373 (446)
Q Consensus 343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 373 (446)
++..|...+-+++..|++.|+.++..+-+..
T Consensus 477 vL~~ll~~llD~NK~VQEAAcsAfAtleE~A 507 (885)
T KOG2023|consen 477 VLEGLLRRLLDSNKKVQEAACSAFATLEEEA 507 (885)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence 4555666666789999999999988866543
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.60 E-value=1.8e-13 Score=131.89 Aligned_cols=362 Identities=16% Similarity=0.199 Sum_probs=252.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV 83 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 83 (446)
+..+.+.|.++|+.++-.|++++.++... .+.+ .+++.+.+++.+++ +.+|..|+.++.++...+|+...
T Consensus 81 ~n~l~kdl~~~n~~~~~lAL~~l~~i~~~-------~~~~-~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~- 150 (526)
T PF01602_consen 81 INSLQKDLNSPNPYIRGLALRTLSNIRTP-------EMAE-PLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVE- 150 (526)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHH-SH-------HHHH-HHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHH-
T ss_pred HHHHHHhhcCCCHHHHHHHHhhhhhhccc-------chhh-HHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHH-
Confidence 45677888899999999999999987532 2232 36888889999999 89999999999999875555322
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 043676 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP 163 (446)
Q Consensus 84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 163 (446)
.. .++.+.+++.++++.++..|+.++..+ ..++.....+ -...+..+.+.+ ...++-.+..++.++..++...+
T Consensus 151 --~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~~~l-~~~~~~~q~~il~~l~~~~~~~~ 224 (526)
T PF01602_consen 151 --DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSL-IPKLIRILCQLL-SDPDPWLQIKILRLLRRYAPMEP 224 (526)
T ss_dssp --GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHHHHH-TCCSHHHHHHHHHHHTTSTSSSH
T ss_pred --HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhhhcc-cccchHHHHHHHHHHHhcccCCh
Confidence 12 478899999999999999999999998 2222210011 111233444444 66788888899988888776542
Q ss_pred CCChhhh--hhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHh
Q 043676 164 EPPFDQV--RPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241 (446)
Q Consensus 164 ~~~~~~~--~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l 241 (446)
... ..+++.+..++++.++.+...++.++..+....+ .-..+++.+..++.++++.++..++..+..+
T Consensus 225 ----~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l 294 (526)
T PF01602_consen 225 ----EDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLSQL 294 (526)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHH
T ss_pred ----hhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHHHh
Confidence 122 5688889999998899999999999998876533 2226788999999999999999999999999
Q ss_pred hcCCchhhHHHHhcCChHHHHHHhc-cCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CCcchHHHH
Q 043676 242 VTGDDFQTQCIINHGAVPYLLDMLV-HNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN-AEFDTKKEA 319 (446)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a 319 (446)
+...+. .+. .....+..+. ++ +..+|..++..+..++. +.+... +++.|...+.+ .+++++..+
T Consensus 295 ~~~~~~----~v~--~~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d~~~~~~~ 360 (526)
T PF01602_consen 295 AQSNPP----AVF--NQSLILFFLLYDD-DPSIRKKALDLLYKLAN--ESNVKE-----ILDELLKYLSELSDPDFRREL 360 (526)
T ss_dssp CCHCHH----HHG--THHHHHHHHHCSS-SHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC--HHHHHHH
T ss_pred hcccch----hhh--hhhhhhheecCCC-ChhHHHHHHHHHhhccc--ccchhh-----HHHHHHHHHHhccchhhhhhH
Confidence 986622 222 2233344555 56 88999999999999964 444443 57778888844 478899999
Q ss_pred HHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChH
Q 043676 320 AWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGL 399 (446)
Q Consensus 320 ~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 399 (446)
+.+++.++.... ..... +++.+++++...++.+...+...+.+++...++.+ ... +
T Consensus 361 i~~I~~la~~~~-~~~~~-----~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~------------~~~------l 416 (526)
T PF01602_consen 361 IKAIGDLAEKFP-PDAEW-----YVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR------------EKI------L 416 (526)
T ss_dssp HHHHHHHHHHHG-SSHHH-----HHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH------------HHH------H
T ss_pred HHHHHHHHhccC-chHHH-----HHHHHHHhhhhccccccchHHHHHHHHhhcChhhh------------HHH------H
Confidence 999999876421 11111 46778888887777777777777877776544432 111 3
Q ss_pred HHHHHh-hcCCCHHHHHHHHHHHHHhcCCCC
Q 043676 400 EKIENL-QSHDNNEIHEKSVKIFKTYWCGRN 429 (446)
Q Consensus 400 ~~l~~l-~~~~~~~v~~~a~~~l~~~~~~~~ 429 (446)
+.+.++ ..-.++++...+.|++..|-+..+
T Consensus 417 ~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~ 447 (526)
T PF01602_consen 417 KKLIELLEDISSPEALAAAIWILGEYGELIE 447 (526)
T ss_dssp HHHHHHHTSSSSHHHHHHHHHHHHHHCHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHhhhcccCCccc
Confidence 333333 345677888888899888865433
No 36
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.58 E-value=4.1e-13 Score=129.45 Aligned_cols=330 Identities=19% Similarity=0.199 Sum_probs=241.9
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
.++.+++.+.+.|...+..+--++..+...+ +..-.+ +++.+.+-+.+++ +.++..|+++++++.. ++...
T Consensus 43 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~~~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~~ 113 (526)
T PF01602_consen 43 LFMEVIKLISSKDLELKRLGYLYLSLYLHED--PELLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMAE 113 (526)
T ss_dssp THHHHHCTCSSSSHHHHHHHHHHHHHHTTTS--HHHHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc--hhHHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchhh
Confidence 4567788888899998888887777766542 221111 4677777888988 8999999999999984 55554
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK 162 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 162 (446)
.+ ++.+.+++.++++.+|..|+.++..+....|.. +... .++.+.+++ .+.++.++..|+.++..+ ...
T Consensus 114 ~l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~~ 182 (526)
T PF01602_consen 114 PL-----IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KCN 182 (526)
T ss_dssp HH-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HCT
T ss_pred HH-----HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-ccC
Confidence 44 688889999999999999999999998666542 2222 467888888 788899999999999999 222
Q ss_pred CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhh
Q 043676 163 PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV 242 (446)
Q Consensus 163 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~ 242 (446)
+..........++.+.+++...++..+..+++++..++...+..... ..+++.+..++.+.++.+...++.++..+.
T Consensus 183 ~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~ 259 (526)
T PF01602_consen 183 DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS 259 (526)
T ss_dssp HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 11111344566677777778889999999999999998776654421 367788888888888899999999998877
Q ss_pred cCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCCcchHHHHHH
Q 043676 243 TGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQ-NAEFDTKKEAAW 321 (446)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~ 321 (446)
...+ .-..+++.+..++.++ ++.++..++..+..++...+... . .....+..+. +.+..+|..++.
T Consensus 260 ~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v----~--~~~~~~~~l~~~~d~~Ir~~~l~ 326 (526)
T PF01602_consen 260 PSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAV----F--NQSLILFFLLYDDDPSIRKKALD 326 (526)
T ss_dssp SSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHH----G--THHHHHHHHHCSSSHHHHHHHHH
T ss_pred cchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhh----h--hhhhhhheecCCCChhHHHHHHH
Confidence 6433 2234678899999987 89999999999999987653322 2 2222233444 778899999999
Q ss_pred HHHHhccCCCHHHHHHHHHcCChHHHHhcc-cCCCHHHHHHHHHHHHHHHHhhhhh
Q 043676 322 AISNATSGGTQEQIKHLVREGCVKPLCDLL-LCSDPEIVTVCLIGLENILKVGEAE 376 (446)
Q Consensus 322 aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~~~~~~~~~l~~l~~~~~~~ 376 (446)
.|..++. +.+... +++.|...+ +..+++++..++..+..+....+..
T Consensus 327 lL~~l~~---~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~ 374 (526)
T PF01602_consen 327 LLYKLAN---ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD 374 (526)
T ss_dssp HHHHH-----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS
T ss_pred HHhhccc---ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch
Confidence 9999985 455555 467788888 4558889999999998887765543
No 37
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.58 E-value=9.1e-12 Score=111.50 Aligned_cols=322 Identities=16% Similarity=0.189 Sum_probs=232.8
Q ss_pred CChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHHHHHc-----CChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676 88 GAVPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQ-----GALIPLLAELNEHAKLSMLRNATRTLSNFCRG 161 (446)
Q Consensus 88 ~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-----~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 161 (446)
..+..++.++.. ..+++.+.++..+.-+....+.....+.+. ....+++.++ ...+.-+...++..+..+...
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhc
Confidence 456777778776 668899999999999998877655555543 4677888888 567888999999999999876
Q ss_pred CCCCCh-hhhhhhHHHHHHhhcCC-CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC--CccchhHHHHH
Q 043676 162 KPEPPF-DQVRPALPALAQLVHSN-DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHP--SPSVLTPALRT 237 (446)
Q Consensus 162 ~~~~~~-~~~~~~~~~l~~ll~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~~~~~a~~~ 237 (446)
.+.... ......++.+...+++. +...+..++.++..+....+.+ ..+.+.++++.|+++|+.. +......++.|
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 533211 12233445666666654 4777888889999999887755 4577788999999999873 44678889999
Q ss_pred HHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCC------HHHHHHHHHcCChHHHHHHHhcC
Q 043676 238 VGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGN------REQIQAVIDAGLIRPIVNLLQNA 311 (446)
Q Consensus 238 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~------~~~~~~~~~~~~i~~L~~ll~~~ 311 (446)
++-++...+ ........++++.++.+++.....++..-++.++.|+...+ ......+++.|+.+.+-.+...+
T Consensus 211 lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk 289 (429)
T cd00256 211 IWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK 289 (429)
T ss_pred HHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC
Confidence 999987544 55555678999999999988767888888999999998632 22334566667766554444332
Q ss_pred --CcchHHHHHHHH-------HHhcc------------------CC----CHHHHHHHHHcCC--hHHHHhccc-CCCHH
Q 043676 312 --EFDTKKEAAWAI-------SNATS------------------GG----TQEQIKHLVREGC--VKPLCDLLL-CSDPE 357 (446)
Q Consensus 312 --~~~v~~~a~~aL-------~~l~~------------------~~----~~~~~~~l~~~~~--i~~L~~ll~-~~~~~ 357 (446)
|+++....-..- ..++. +. -.++...|.++++ +..|+++|+ +.|+.
T Consensus 290 ~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~ 369 (429)
T cd00256 290 YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI 369 (429)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence 555432221111 11111 00 1245566665543 788899984 56788
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043676 358 IVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYW 425 (446)
Q Consensus 358 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 425 (446)
+...||.=+..+++..+.. +..+.+.|+-+.+.+|++|++++|+..|..+++++.
T Consensus 370 ~laVAc~Dige~vr~~P~g-------------r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 370 ILAVACHDIGEYVRHYPRG-------------KDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred eeehhhhhHHHHHHHCccH-------------HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 8888999999999988775 578889999999999999999999999999998774
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=99.57 E-value=3.7e-11 Score=116.00 Aligned_cols=259 Identities=15% Similarity=0.112 Sum_probs=175.4
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV 83 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 83 (446)
++.+++.+.+.|..++....-.+.+.+... +... + -.++.+.+=+.+++ +.+|..|+++++++.. ++....
T Consensus 70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~--pela-l---LaINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e~ 140 (746)
T PTZ00429 70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQ--PEKA-L---LAVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLEY 140 (746)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccC--hHHH-H---HHHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHHH
Confidence 455666777777777777777777665532 2111 1 13666777778888 8999999998888765 333333
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 043676 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP 163 (446)
Q Consensus 84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 163 (446)
.+..+.+.+.+.++-||..|+.++.++....++ .+.+.+.++.+..++ .+.++.+..+|+.+|..+....+
T Consensus 141 -----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~~ 211 (746)
T PTZ00429 141 -----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYGS 211 (746)
T ss_pred -----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhCc
Confidence 356778888889999999999999999866553 344556778888877 78899999999999999987654
Q ss_pred CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676 164 EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT 243 (446)
Q Consensus 164 ~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~ 243 (446)
. ........+..+...+...++..+..++.++......+.... ..++..+...+++.++.|...|+.++.++..
T Consensus 212 ~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 212 E-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLAS 285 (746)
T ss_pred h-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 3 234445666777777777788888888888866433222222 2667788888999999999999999998876
Q ss_pred CC-chhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCH
Q 043676 244 GD-DFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNR 289 (446)
Q Consensus 244 ~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 289 (446)
.. +....... ..+...++.++ ++ +++++.-++..+.-++...+
T Consensus 286 ~~~~~~~~~~~-~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P 329 (746)
T PTZ00429 286 RCSQELIERCT-VRVNTALLTLS-RR-DAETQYIVCKNIHALLVIFP 329 (746)
T ss_pred cCCHHHHHHHH-HHHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCH
Confidence 43 22222211 11224455553 34 56677777766666654433
No 39
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2e-13 Score=123.37 Aligned_cols=312 Identities=18% Similarity=0.203 Sum_probs=216.9
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHc----CChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 043676 88 GAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQ----GALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP 163 (446)
Q Consensus 88 ~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~----~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 163 (446)
.+++.|..+|.+++....+.|..+|..+|++++..-+.-... -.++.+++.. +++++.+|..|+.++-.+....+
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~-~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFF-KHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHH-hCCChhHHHHHHhhhhheeecCc
Confidence 357899999999999999999999999998876543321111 2477788888 78899999999999998877765
Q ss_pred CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676 164 EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT 243 (446)
Q Consensus 164 ~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~ 243 (446)
..-......++..+..+-.+.+++||..++.++..+....+++...... ++++.+++..++.+..+..+||.....++.
T Consensus 207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~-~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLD-NIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchH-HHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 5555666788888888888889999999999999999877765544443 888889999999999999999999998887
Q ss_pred CCchhhHHHH---hcCChHHHHHHhccCc----------h----------------------------------------
Q 043676 244 GDDFQTQCII---NHGAVPYLLDMLVHNH----------E---------------------------------------- 270 (446)
Q Consensus 244 ~~~~~~~~~~---~~~~~~~l~~~l~~~~----------~---------------------------------------- 270 (446)
.. - .+.++ -..++|.|+.-+..+. +
T Consensus 286 qp-i-~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDd 363 (885)
T KOG2023|consen 286 QP-I-CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDD 363 (885)
T ss_pred Cc-C-cHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccc
Confidence 44 2 22222 1235555554332110 0
Q ss_pred -----HHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH----HHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHc
Q 043676 271 -----EIIKKEISWIISNITAGNREQIQAVIDAGLIRP----IVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVRE 341 (446)
Q Consensus 271 -----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~----L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~ 341 (446)
..+|+.++.+|.-+ ..+....+++. |-+.|.++++.+|+.+.-|++.++.++..-...++-+
T Consensus 364 D~~~dWNLRkCSAAaLDVL--------anvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lpe- 434 (885)
T KOG2023|consen 364 DAFSDWNLRKCSAAALDVL--------ANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPE- 434 (885)
T ss_pred cccccccHhhccHHHHHHH--------HHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHH-
Confidence 12333333333222 22222334444 4445556788999999999999998765544444433
Q ss_pred CChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHH
Q 043676 342 GCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421 (446)
Q Consensus 342 ~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l 421 (446)
.++.|+++|+++.+-||...+|.|+++...--... -.+.|. ..+..|.+-.-+.|.+|++.|..+.
T Consensus 435 -Lip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~-----------~~~~f~--pvL~~ll~~llD~NK~VQEAAcsAf 500 (885)
T KOG2023|consen 435 -LIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDS-----------RDEYFK--PVLEGLLRRLLDSNKKVQEAACSAF 500 (885)
T ss_pred -HHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCC-----------hHhhhH--HHHHHHHHHHhcccHHHHHHHHHHH
Confidence 68999999999999999999999999765432221 011221 0122333334577899999998887
Q ss_pred HHhcC
Q 043676 422 KTYWC 426 (446)
Q Consensus 422 ~~~~~ 426 (446)
..+-+
T Consensus 501 AtleE 505 (885)
T KOG2023|consen 501 ATLEE 505 (885)
T ss_pred HHHHH
Confidence 76643
No 40
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.54 E-value=3.7e-13 Score=102.10 Aligned_cols=119 Identities=35% Similarity=0.606 Sum_probs=110.3
Q ss_pred HHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 043676 40 KVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS 119 (446)
Q Consensus 40 ~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~ 119 (446)
.+.+.|+++.+++++.+++ +.++..++++|++++...++....+++.|+++.+++++.++++.++..++++|++++...
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 3567899999999999998 899999999999999977999999999999999999999999999999999999999888
Q ss_pred hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676 120 PRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR 160 (446)
Q Consensus 120 ~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 160 (446)
+.....+.+.|.++.++..+ .+.+..+++.++++|.+++.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 87888888999999999999 66689999999999999874
No 41
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=5.2e-12 Score=117.40 Aligned_cols=342 Identities=15% Similarity=0.147 Sum_probs=252.0
Q ss_pred ChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676 3 SFPALVAGVWSD-DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT 81 (446)
Q Consensus 3 ~i~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 81 (446)
.+|.|+++|+++ ++++...|+++|..++..- ++....+++.+++|.|+.-|..=.+-++.++++.+|-.++. ++-
T Consensus 212 lvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR---~H~ 287 (1051)
T KOG0168|consen 212 LVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR---RHP 287 (1051)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh---hcc
Confidence 378999999975 6999999999999998875 56677888999999999888776668999999999999988 445
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676 82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR 160 (446)
Q Consensus 82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 160 (446)
..+.+.|++...+.++..-+..+++.|+.+..|+|..- ++--..+++ .+|.|..+| +..+.+..+.++-++..++.
T Consensus 288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~d 364 (1051)
T KOG0168|consen 288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIAD 364 (1051)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHHH
Confidence 66788999999999999888999999999999999432 222334444 688899999 77888899999999999988
Q ss_pred CC-CCCCh---hhhhhhHHHHHHhhcCC----CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCcc---
Q 043676 161 GK-PEPPF---DQVRPALPALAQLVHSN----DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPS--- 229 (446)
Q Consensus 161 ~~-~~~~~---~~~~~~~~~l~~ll~~~----~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~--- 229 (446)
.. +.... ....+.+....+++.-. +..+-...++.+..++...+.....+.+.++...+..++...+..
T Consensus 365 ~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~na 444 (1051)
T KOG0168|consen 365 GFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANA 444 (1051)
T ss_pred hcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCccc
Confidence 76 22222 23367777777877644 345666777888888888787777788888888888877642110
Q ss_pred -----c-h-----hHHH----------------------------------------------------HHHHHh-----
Q 043676 230 -----V-L-----TPAL----------------------------------------------------RTVGNI----- 241 (446)
Q Consensus 230 -----~-~-----~~a~----------------------------------------------------~~l~~l----- 241 (446)
+ + .... +.+..+
T Consensus 445 s~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~ 524 (1051)
T KOG0168|consen 445 SLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTG 524 (1051)
T ss_pred ccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcc
Confidence 0 0 0000 011100
Q ss_pred -----------------hcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHc-CChH
Q 043676 242 -----------------VTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAVIDA-GLIR 302 (446)
Q Consensus 242 -----------------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~-~~i~ 302 (446)
....++..+.+. ..+++.|+++..+.-++.||..++.+|..+.. .+.+.+..+++. .+-.
T Consensus 525 t~~~~~dkl~~~~r~~~l~nqpel~q~F~-~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS 603 (1051)
T KOG0168|consen 525 TSRKQQDKLNGSAREGLLKNQPELLQSFG-KDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSS 603 (1051)
T ss_pred cchhhhhhcCCchhhhhhhcCHHHHHHHH-HHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHH
Confidence 001111222222 23678888888877789999999999999976 577888877764 4555
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhccc
Q 043676 303 PIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL 352 (446)
Q Consensus 303 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~ 352 (446)
.+-.++.+++..+..-|+...--+...-.+.....|..+|++..+-++..
T Consensus 604 ~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 604 HLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred HHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 56678888899888888887777777655566777888898888888776
No 42
>PTZ00429 beta-adaptin; Provisional
Probab=99.49 E-value=4.2e-10 Score=108.80 Aligned_cols=293 Identities=14% Similarity=0.081 Sum_probs=206.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV 83 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 83 (446)
+.-|-+.|.+.+...+..+++.+......+ .+.. .+.+..++++.+++ .++|..+...+.+++...++....
T Consensus 34 ~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pelalL 105 (746)
T PTZ00429 34 GAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKALL 105 (746)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHHHH
Confidence 455677788888888888887665544433 3322 35777788899998 899999999999998866654322
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 043676 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP 163 (446)
Q Consensus 84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 163 (446)
.++.+.+=+.++++.+|..|+++++++-. +...+. .+..+.+.+ .+.++-+++.|+.++..+....+
T Consensus 106 -----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~p 172 (746)
T PTZ00429 106 -----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDDM 172 (746)
T ss_pred -----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCc
Confidence 36788888999999999999999998862 222222 345667777 78899999999999999987654
Q ss_pred CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676 164 EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT 243 (446)
Q Consensus 164 ~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~ 243 (446)
. .....++++.+..++.+.|+.+..+|+.++..+....+.... ...+.+..++..+...++-.+...+.++...
T Consensus 173 e--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y-- 246 (746)
T PTZ00429 173 Q--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQ-- 246 (746)
T ss_pred c--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--
Confidence 2 334467889999999999999999999999999876654332 2335567777777766666666666666443
Q ss_pred CCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHH
Q 043676 244 GDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWA 322 (446)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 322 (446)
.+...... ..++..+...|++. ++.|.-+|+.++.++... +++....+.. .+.++++.+ .+++++++..++..
T Consensus 247 -~P~~~~e~--~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L-~ss~~eiqyvaLr~ 320 (746)
T PTZ00429 247 -RPSDKESA--ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTL-SRRDAETQYIVCKN 320 (746)
T ss_pred -CCCCcHHH--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHh-hCCCccHHHHHHHH
Confidence 22222111 24677888889998 899999999999988653 2333332221 233556665 34667888888877
Q ss_pred HHHhccC
Q 043676 323 ISNATSG 329 (446)
Q Consensus 323 L~~l~~~ 329 (446)
+..+...
T Consensus 321 I~~i~~~ 327 (746)
T PTZ00429 321 IHALLVI 327 (746)
T ss_pred HHHHHHH
Confidence 7666553
No 43
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.49 E-value=2.8e-11 Score=108.39 Aligned_cols=308 Identities=16% Similarity=0.108 Sum_probs=208.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV 83 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 83 (446)
...++..|..+|..++..|+..++.+++.. ..........-..+.+...+++++....+..|+.+|..+.. .++.|..
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~-~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~ 180 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFG-LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFA 180 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcC-ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHH
Confidence 456777888999999999999999998764 22222112222455667777765446888899999999998 7899999
Q ss_pred HHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676 84 VIDHGAVPIFVKLLSS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG 161 (446)
Q Consensus 84 ~~~~~~i~~L~~~L~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 161 (446)
+.+.++++.|..+|+. .+..++..++.+++-++...+ ........+.++.++.++.....+.+.+-++.+|.|+...
T Consensus 181 f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 181 FVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred HHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 9999999999999986 256889999999999996554 5556667889999999998888999999999999999986
Q ss_pred CCCC------ChhhhhhhHHHHHHhhcCC---CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC----Cc
Q 043676 162 KPEP------PFDQVRPALPALAQLVHSN---DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHP----SP 228 (446)
Q Consensus 162 ~~~~------~~~~~~~~~~~l~~ll~~~---~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~----~~ 228 (446)
.... ........++.++..|... |+++.+..-..-..+-.. +-+..-++.-..=+.++ +|
T Consensus 260 ~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~-------~k~ltsfD~Y~~El~sg~L~WSp 332 (429)
T cd00256 260 RVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNS-------VQDLSSFDEYKSELRSGRLHWSP 332 (429)
T ss_pred ccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH-------HHHcCCHHHHHHHHhcCCccCCC
Confidence 4111 1112232344445555432 666655433222222111 00111111111111111 22
Q ss_pred cchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 043676 229 SVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLL 308 (446)
Q Consensus 229 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll 308 (446)
.-+....| -.|.....+.. ..++..|+++|..+.++.+..-||.-++.++...|..+..+-+.|+=..+++++
T Consensus 333 ~H~se~FW-~EN~~kf~~~~------~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm 405 (429)
T cd00256 333 VHKSEKFW-RENADRLNEKN------YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLL 405 (429)
T ss_pred CCCCchHH-HHHHHHHHhcc------hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHh
Confidence 22222332 11222111111 235678899996554788888899999999998888887777899999999999
Q ss_pred hcCCcchHHHHHHHHHHhcc
Q 043676 309 QNAEFDTKKEAAWAISNATS 328 (446)
Q Consensus 309 ~~~~~~v~~~a~~aL~~l~~ 328 (446)
.++|++|+.+|+.|+..+..
T Consensus 406 ~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 406 NHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 44
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.49 E-value=9.7e-13 Score=99.76 Aligned_cols=118 Identities=32% Similarity=0.510 Sum_probs=109.7
Q ss_pred HHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCH
Q 043676 210 VIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNR 289 (446)
Q Consensus 210 ~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 289 (446)
+.+.|+++.+++++.+.++.++..+++++++++...+.....+.+.++++.+..++.++ ++.++..++|+|+|++...+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence 56779999999999999999999999999999998888888888999999999999998 99999999999999998877
Q ss_pred HHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhcc
Q 043676 290 EQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATS 328 (446)
Q Consensus 290 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 328 (446)
.....+.+.|+++.+++++.+.+..+++.++++|.+++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 777888889999999999999999999999999999863
No 45
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=4.8e-11 Score=110.01 Aligned_cols=360 Identities=13% Similarity=0.076 Sum_probs=232.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHh
Q 043676 7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVID 86 (446)
Q Consensus 7 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 86 (446)
+.+.|++..|...-.|+.++..++..+ -+. ... .++++.|+.....+....++..++.+++-++.+-......-..
T Consensus 95 il~tL~~~ep~~~s~Aaq~va~IA~~E-lP~-n~w--p~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~s 170 (859)
T KOG1241|consen 95 ILRTLGSPEPRRPSSAAQCVAAIACIE-LPQ-NQW--PELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQS 170 (859)
T ss_pred HHHHcCCCCCCccchHHHHHHHHHHhh-Cch-hhC--HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 455677777777778888888887764 111 111 1456666666666663469999999999999833222222223
Q ss_pred cCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCC-hHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 043676 87 HGAVPIFVKLLSS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGA-LIPLLAELNEHAKLSMLRNATRTLSNFCRGKP 163 (446)
Q Consensus 87 ~~~i~~L~~~L~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~-i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 163 (446)
+.++..++...+. ++..+|-.|+.+|.|--.....+-..-.+.+. +...+..- ++++.+++..+..||..+..-..
T Consensus 171 N~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEat-q~~d~~i~~aa~~ClvkIm~LyY 249 (859)
T KOG1241|consen 171 NDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEAT-QSPDEEIQVAAFQCLVKIMSLYY 249 (859)
T ss_pred hHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecc-cCCcHHHHHHHHHHHHHHHHHHH
Confidence 4667778877765 67899999999998866332211111112222 22223333 67899999999999998876531
Q ss_pred CCC-hhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcH---------------HHHHHHH---hCcHHHHHHhcC
Q 043676 164 EPP-FDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTND---------------KIQAVIE---AGVCPRLVELLG 224 (446)
Q Consensus 164 ~~~-~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~---------------~~~~~~~---~~~~~~l~~ll~ 224 (446)
... .-.....++.-..-++++++++...++..-+++|...-+ ....+.+ .+++|.|+++|.
T Consensus 250 ~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~ 329 (859)
T KOG1241|consen 250 EFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLT 329 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHH
Confidence 111 111133455555666788999999999988888743221 0111111 156788888876
Q ss_pred C-------CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043676 225 H-------PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVID 297 (446)
Q Consensus 225 ~-------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 297 (446)
. +++.....|..||.-++....+. ++. .+++.+-+-++++ +.+-|..|+.+++.+..+.......-+.
T Consensus 330 kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV 404 (859)
T KOG1241|consen 330 KQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIV 404 (859)
T ss_pred hCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHH
Confidence 5 34567777777777776544332 222 4566666678888 9999999999999998775555555555
Q ss_pred cCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 043676 298 AGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAER 377 (446)
Q Consensus 298 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~ 377 (446)
.+.+|.++.++.++...++..+.|+++.++................+..+..-+ .+.|.+..+++|++.++.+...+..
T Consensus 405 ~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea~~eA~ 483 (859)
T KOG1241|consen 405 IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEAAYEAA 483 (859)
T ss_pred hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHHHHhc
Confidence 589999999999888899999999999998763211111111111222222222 3578899999999999997666554
No 46
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=7.5e-11 Score=108.77 Aligned_cols=327 Identities=17% Similarity=0.172 Sum_probs=226.4
Q ss_pred hHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676 4 FPALVAGVWS--DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT 81 (446)
Q Consensus 4 i~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 81 (446)
+..+++...+ .+..+|+.|+.+|.+-+...+.....+.-.+-++...++.-++++ .+++..|..||..+..-.-+..
T Consensus 174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY~~m 252 (859)
T KOG1241|consen 174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYYEFM 252 (859)
T ss_pred HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666664 467899999999998776653344455556667778888889999 8999999999999998555555
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHH---HHH---------------HHcCChHHHHHHhcc-c
Q 043676 82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCR---DLV---------------LSQGALIPLLAELNE-H 142 (446)
Q Consensus 82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~---~~~---------------~~~~~i~~l~~~l~~-~ 142 (446)
..-+.......-+.-++++++++..+++..++++|...-... ... .-.+.+|.|+++|.+ +
T Consensus 253 ~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqd 332 (859)
T KOG1241|consen 253 EPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQD 332 (859)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCC
Confidence 555555667777778889999999999999999994321100 000 112457788888854 2
Q ss_pred c-----chhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHH
Q 043676 143 A-----KLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCP 217 (446)
Q Consensus 143 ~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 217 (446)
+ +...-..+-.||.-++..... ......+|.+-.-++++|..-++.+..+++.+..........-+-.+.++
T Consensus 333 e~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp 409 (859)
T KOG1241|consen 333 EDDDDDDWNPAKAAGVCLMLFAQCVGD---DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALP 409 (859)
T ss_pred CCcccccCcHHHHHHHHHHHHHHHhcc---cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhH
Confidence 2 223444555555544443211 12346677777788899999999999999999988776666566669999
Q ss_pred HHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHH-HhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHH---
Q 043676 218 RLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCI-INHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQ--- 293 (446)
Q Consensus 218 ~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~--- 293 (446)
.++.++.+++-.++..+.|+++.++.+.++.+... .....++.++..|.+. +.+...++|++.+++.+..+...
T Consensus 410 ~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De--Prva~N~CWAf~~Laea~~eA~~s~~ 487 (859)
T KOG1241|consen 410 SIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE--PRVASNVCWAFISLAEAAYEAAVSNG 487 (859)
T ss_pred HHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC--chHHHHHHHHHHHHHHHHHHhccCCC
Confidence 99999998888899999999999998776433222 2334556666666544 68899999999999852211110
Q ss_pred ------HHHHcCChHHHHHHHhc---CCcchHHHHHHHHHHhccCCCHHHHHH
Q 043676 294 ------AVIDAGLIRPIVNLLQN---AEFDTKKEAAWAISNATSGGTQEQIKH 337 (446)
Q Consensus 294 ------~~~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~~l~~~~~~~~~~~ 337 (446)
.+.+ .++..|++..+. .+..+|..|..+|..+...+..+....
T Consensus 488 qt~~~t~~y~-~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~ 539 (859)
T KOG1241|consen 488 QTDPATPFYE-AIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPM 539 (859)
T ss_pred CCCccchhHH-HHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 1111 244455554443 356899999999999998865554433
No 47
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.40 E-value=3.4e-12 Score=116.93 Aligned_cols=344 Identities=14% Similarity=0.104 Sum_probs=226.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCC-hHHHHHHHHHHHHHcCCChhhHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDY-PQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~-~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
+..++..++++.+..+...+....++...-+......-.+...+..++..++.+++ ..+......++.+-... ..+.
T Consensus 718 v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~--r~kp 795 (1172)
T KOG0213|consen 718 VSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG--RVKP 795 (1172)
T ss_pred HHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh--cccc
Confidence 55667778888888888888888877654322223333333456666666666552 22333333333332221 1111
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH--HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD--LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR 160 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~--~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 160 (446)
. -..++..++..|+++++.+|++|+..++.++..-..|.+ .+...|. .|...| ....+++.-..+.++..+..
T Consensus 796 y--lpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI~n 870 (1172)
T KOG0213|consen 796 Y--LPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAIVN 870 (1172)
T ss_pred c--hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHHHH
Confidence 1 123467778889999999999999999998832222211 2222222 345556 56678888888888877765
Q ss_pred CC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHH
Q 043676 161 GK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVG 239 (446)
Q Consensus 161 ~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~ 239 (446)
.. -....--..+++|.|..+|++...+++++++..++.++...++....---..+.--|+.+|+..+..+|..|...++
T Consensus 871 vigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG 950 (1172)
T KOG0213|consen 871 VIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFG 950 (1172)
T ss_pred hccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 54 12223345789999999999999999999999999999887754332111233344677777788899999999999
Q ss_pred HhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHH
Q 043676 240 NIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEA 319 (446)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 319 (446)
.++..-. -..++..|+.-|+.. +...|.....+++-.+..+.. ..++|.|++=....+..|+.-.
T Consensus 951 ~IakaIG-------PqdVLatLlnnLkvq-eRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtPe~nVQnGV 1015 (1172)
T KOG0213|consen 951 YIAKAIG-------PQDVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTPEANVQNGV 1015 (1172)
T ss_pred HHHHhcC-------HHHHHHHHHhcchHH-HHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCchhHHHHhH
Confidence 8876322 223566777777766 555555555555544432111 1378888887777888999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHH
Q 043676 320 AWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILK 371 (446)
Q Consensus 320 ~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~ 371 (446)
+.+++.++....+-...++.. +.|.|.+.|-+.|.--+..+..++..+.-
T Consensus 1016 Lkalsf~FeyigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1016 LKALSFMFEYIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred HHHHHHHHHHHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 999999988755444455443 67888888888999889989988888653
No 48
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.37 E-value=2.2e-10 Score=99.01 Aligned_cols=308 Identities=15% Similarity=0.094 Sum_probs=212.4
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV 83 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 83 (446)
.+.++.+|..+|..+...+.+.+..+++.. +.........-....|-..+++..+.+....|++||..+.. -++.|..
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~ 193 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYA 193 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchhhe
Confidence 456788899999988888999999988875 32222111111234455566664447888999999999998 7899999
Q ss_pred HHhcCChHHHHHhhC-C-CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676 84 VIDHGAVPIFVKLLS-S-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG 161 (446)
Q Consensus 84 ~~~~~~i~~L~~~L~-~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 161 (446)
++...++..++..+. . .+-.++.+.+.+++-++...+ ..+.+...+.++.+..++..+..+.+.+-++.++.|++..
T Consensus 194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~-~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPH-AAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999888999999883 3 567889999999999995554 4567788889999999998888899999999999999988
Q ss_pred CCCCChh------hhhhhHHHHHHhhcC---CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC----CCc
Q 043676 162 KPEPPFD------QVRPALPALAQLVHS---NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH----PSP 228 (446)
Q Consensus 162 ~~~~~~~------~~~~~~~~l~~ll~~---~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~----~~~ 228 (446)
.+.+... ...+-++..++.|.. +|+++....-..-..+-.. .+.+ ...+.-..=+.+ -+|
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~s----vq~L---sSFDeY~sEl~sG~L~WSP 345 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNS----VQDL---SSFDEYKSELRSGRLEWSP 345 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH----HHhh---ccHHHHHHHHHhCCcCCCc
Confidence 7433222 223334444455543 2566655443332222211 1111 111111111111 122
Q ss_pred cchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 043676 229 SVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLL 308 (446)
Q Consensus 229 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll 308 (446)
.-+..-.| =.|....++.. ..++..|+.+|+.+.++.+..-|+.-++.+.+..|+.+..+.+.|+=+.+++++
T Consensus 346 ~Hk~e~FW-~eNa~rlnenn------yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Ll 418 (442)
T KOG2759|consen 346 VHKSEKFW-RENADRLNENN------YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLL 418 (442)
T ss_pred cccccchH-HHhHHHHhhcc------HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHh
Confidence 22222222 11222222222 236788999999886788888899999999999999999899999999999999
Q ss_pred hcCCcchHHHHHHHHHHhcc
Q 043676 309 QNAEFDTKKEAAWAISNATS 328 (446)
Q Consensus 309 ~~~~~~v~~~a~~aL~~l~~ 328 (446)
.++|++|+.+|+.|+..+..
T Consensus 419 nh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 419 NHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred cCCCchHHHHHHHHHHHHHh
Confidence 99999999999999988764
No 49
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.33 E-value=4.9e-09 Score=90.85 Aligned_cols=322 Identities=16% Similarity=0.191 Sum_probs=221.8
Q ss_pred ChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHHH------HHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676 89 AVPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDLV------LSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG 161 (446)
Q Consensus 89 ~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~------~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 161 (446)
.+.+++.+++. ..++....++..+.-+-+.++.....+ ...-.-..++.++ ...+.-+.....+.++.++..
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll-~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLL-NRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHH-hcCChHHHHHHHHHHHHHHHh
Confidence 45667777766 345666667766666664443221111 1222356778888 556666777789999998877
Q ss_pred CCCCChh-hhhhhHHHHHHhhcC-CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCccchhHHHHH
Q 043676 162 KPEPPFD-QVRPALPALAQLVHS-NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLTPALRT 237 (446)
Q Consensus 162 ~~~~~~~-~~~~~~~~l~~ll~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~~~~~a~~~ 237 (446)
.+..... ...-....+...+++ .+......+.+||..+...++-+. .++..+++..++..+.+ .+..++...+.|
T Consensus 145 g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~-~~v~adg~~~l~~~l~s~~~~~QlQYqsifc 223 (442)
T KOG2759|consen 145 GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRY-AFVIADGVSLLIRILASTKCGFQLQYQSIFC 223 (442)
T ss_pred ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhh-eeeecCcchhhHHHHhccCcchhHHHHHHHH
Confidence 6332222 223344555556665 577888889999999998877554 46666777888887733 567788899999
Q ss_pred HHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCH------HHHHHHHHcCChHHHHHHHhcC
Q 043676 238 VGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNR------EQIQAVIDAGLIRPIVNLLQNA 311 (446)
Q Consensus 238 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~------~~~~~~~~~~~i~~L~~ll~~~ 311 (446)
++.|+. ++...+.+...+.++.+..++++.....|-.-++.++.|++...+ +....++..++.+.+-.+-+.+
T Consensus 224 iWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rk 302 (442)
T KOG2759|consen 224 IWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERK 302 (442)
T ss_pred HHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcC
Confidence 999987 455556667889999999999887577888889999999987543 4445566766666665555443
Q ss_pred --CcchHHHHHHHH-------HHhccCC----------------------CHHHHHHHHHcC--ChHHHHhcccCC-CHH
Q 043676 312 --EFDTKKEAAWAI-------SNATSGG----------------------TQEQIKHLVREG--CVKPLCDLLLCS-DPE 357 (446)
Q Consensus 312 --~~~v~~~a~~aL-------~~l~~~~----------------------~~~~~~~l~~~~--~i~~L~~ll~~~-~~~ 357 (446)
|+++....-..- ..++... -.++...+.+++ ++..|+.+|+.. ||.
T Consensus 303 ysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~ 382 (442)
T KOG2759|consen 303 YSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPI 382 (442)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCc
Confidence 444432222111 1111110 124555655543 588899999765 488
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043676 358 IVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWC 426 (446)
Q Consensus 358 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 426 (446)
+...|+.=+..+++..+.. +..+...||-+.+.+|++|++++|+-.|..+++++..
T Consensus 383 iL~VAc~DIge~Vr~yP~g-------------k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 383 ILCVACHDIGEYVRHYPEG-------------KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred eeehhhhhHHHHHHhCchH-------------hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 8888999999999988876 5889999999999999999999999999988887653
No 50
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=1.4e-08 Score=94.41 Aligned_cols=327 Identities=14% Similarity=0.167 Sum_probs=243.3
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCh--
Q 043676 45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS--PSDDVREQAVWALGNVAGDSP-- 120 (446)
Q Consensus 45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~--~~~~v~~~a~~~l~~l~~~~~-- 120 (446)
..++.|+.-+.+..-.+-|+.|++.|..++. ++|..+..+| +++|++.|+. .++++...++.++.++....+
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 4588898888877767889999999999987 7888887766 8999999986 579999999999999985432
Q ss_pred ------H--------HH-HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC---ChhhhhhhHHHHHHhhc
Q 043676 121 ------R--------CR-DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEP---PFDQVRPALPALAQLVH 182 (446)
Q Consensus 121 ------~--------~~-~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~~~~l~~ll~ 182 (446)
. .. ..+...+.|..++..+ ...|..+|..++..+..+....+.. .....+.++..++.+|.
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 1 11 1233456677888888 7778999999999999998876432 22344788999999999
Q ss_pred CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC----CccchhHHHHHHHHhhcCCchhhHHHHhcCCh
Q 043676 183 SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHP----SPSVLTPALRTVGNIVTGDDFQTQCIINHGAV 258 (446)
Q Consensus 183 ~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~ 258 (446)
+..+.+|..++..|..++..++...+.+.=.+++..|+.++... ..-|...|+..+.||...+..+...+.+.+.+
T Consensus 177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i 256 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI 256 (970)
T ss_pred hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence 99999999999999999998886666555568999999999873 22477889999999999998888888899999
Q ss_pred HHHHHHhccCc--h--------HH--HHHHHHHHHHHHhc-CC-----HHHHHHHHHcCChHHHHHHHhcC--CcchHHH
Q 043676 259 PYLLDMLVHNH--E--------EI--IKKEISWIISNITA-GN-----REQIQAVIDAGLIRPIVNLLQNA--EFDTKKE 318 (446)
Q Consensus 259 ~~l~~~l~~~~--~--------~~--v~~~a~~~l~~l~~-~~-----~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~ 318 (446)
+.+.++|.... + .+ -...++.++..+.. ++ ..+...+.+.+++..|+.++.+. ..+++..
T Consensus 257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlte 336 (970)
T KOG0946|consen 257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTE 336 (970)
T ss_pred HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHH
Confidence 99998775321 1 11 12345666666654 21 22334566789999999998876 4588999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHcCC----------hHHHHhcccC-CCHHHHHHHHHHHHHHHHhhhhhh
Q 043676 319 AAWAISNATSGGTQEQIKHLVREGC----------VKPLCDLLLC-SDPEIVTVCLIGLENILKVGEAER 377 (446)
Q Consensus 319 a~~aL~~l~~~~~~~~~~~l~~~~~----------i~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~ 377 (446)
+..+++++..++ ..+...|....+ +-.++.+..+ ..+.+|..++.++..++......+
T Consensus 337 siitvAevVRgn-~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq 405 (970)
T KOG0946|consen 337 SIITVAEVVRGN-ARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQ 405 (970)
T ss_pred HHHHHHHHHHhc-hHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhH
Confidence 999999998763 444444443211 1123333333 456788888899988877655543
No 51
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.3e-08 Score=93.78 Aligned_cols=334 Identities=16% Similarity=0.136 Sum_probs=214.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHH
Q 043676 5 PALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVV 84 (446)
Q Consensus 5 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 84 (446)
+.++.+|++.-|.+|..|...+.++...- ++..+ ..+|.|.+-|.+++ +.++..|+.+++.++..+|.+--.
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL~- 218 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYLQ- 218 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCccccc-
Confidence 34566777888888888888888765542 22221 35888888888888 888888888888888877655332
Q ss_pred HhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHh--hcC
Q 043676 85 IDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF--CRG 161 (446)
Q Consensus 85 ~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l--~~~ 161 (446)
.-|.+.++|.+ .+.=+....+..+++|+.-.|..... .++++.+++....-..+...+..++... +.+
T Consensus 219 ----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 219 ----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred ----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 34677777765 33334556677788887666655443 5778888884433344555555554332 222
Q ss_pred CCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHh
Q 043676 162 KPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241 (446)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l 241 (446)
. ........-+++.|-.++.+.|+.+++-.+.+++.+....+...+ .--+.++++|.+.|+.+|..|+..+.-+
T Consensus 290 ~-~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq-----a~kdlIlrcL~DkD~SIRlrALdLl~gm 363 (877)
T KOG1059|consen 290 M-SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ-----AHKDLILRCLDDKDESIRLRALDLLYGM 363 (877)
T ss_pred C-CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-----HhHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 2 123344566788888899999999999999999999988776655 3347789999999999999999999888
Q ss_pred hcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcC-ChHHHHHHHhcCCcchHHHHH
Q 043676 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAG-LIRPIVNLLQNAEFDTKKEAA 320 (446)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~i~~L~~ll~~~~~~v~~~a~ 320 (446)
... .+... ++..|+..+...+....|.+.+.-+..+|+.+.. +++.+-. .+..++++.+-...+.-....
T Consensus 364 Vsk--kNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~snY--~~ItdFEWYlsVlveLa~l~~~~~G~~I~ 434 (877)
T KOG1059|consen 364 VSK--KNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQSNY--QYITDFEWYLSVLVELARLEGTRHGSLIA 434 (877)
T ss_pred hhh--hhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhh--hhhhhHHHHHHHHHHHHhccccchhhHHH
Confidence 762 23332 4566776665553557787777777777664322 2333322 366677777654443333444
Q ss_pred HHHHHhccCCCHHHHHHHHHcCChHHHHhccc-----------CCCHHHHHHHHHHHHHHHHhhhhh
Q 043676 321 WAISNATSGGTQEQIKHLVREGCVKPLCDLLL-----------CSDPEIVTVCLIGLENILKVGEAE 376 (446)
Q Consensus 321 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-----------~~~~~~~~~~~~~l~~l~~~~~~~ 376 (446)
.-+.+++.. -+..+.+ .+..+..++. ..-.++...|.|++..+...-++.
T Consensus 435 eQi~Dv~iR-V~~iR~f-----sV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~ 495 (877)
T KOG1059|consen 435 EQIIDVAIR-VPSIRPF-----SVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENP 495 (877)
T ss_pred HHHHHHhee-chhhhHh-----HHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCH
Confidence 444444432 1222222 1222222222 123578888999999877765554
No 52
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.2e-09 Score=91.76 Aligned_cols=190 Identities=18% Similarity=0.210 Sum_probs=158.8
Q ss_pred CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHH
Q 043676 184 NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLD 263 (446)
Q Consensus 184 ~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ 263 (446)
.+.+-++.++.-|..++.+-+ ....+...|+...++..+.+.+..+|+.|+++|+..+..+|.....+++.++++.|+.
T Consensus 95 ~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 367777888888888887655 4445888899999999999999999999999999999999999999999999999999
Q ss_pred HhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CCcchHHHHHHHHHHhccCCCHHHHHHHHHc
Q 043676 264 MLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN--AEFDTKKEAAWAISNATSGGTQEQIKHLVRE 341 (446)
Q Consensus 264 ~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~ 341 (446)
++.+..+..+|..|.++++.+....+.....+...++...|.+.+++ .+...+..++..+..+.... ......+...
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~-~s~~d~~~~~ 252 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED-KSDEDIASSL 252 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh-hhhhhHHHHh
Confidence 99887677888999999999999888888999988889999999998 56788999999999998753 2333344556
Q ss_pred CChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676 342 GCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 342 ~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 375 (446)
+....+..+....+.++...++.++..++.....
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~ 286 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSELST 286 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhh
Confidence 6677777788888888998888888776654433
No 53
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=9.8e-10 Score=93.83 Aligned_cols=186 Identities=22% Similarity=0.198 Sum_probs=157.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHH
Q 043676 13 SDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPI 92 (446)
Q Consensus 13 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 92 (446)
+.+.+-+..|+.-|..++.. -++...+...|++..++..+++++ ..+|..|+++++..+..+|.....+++.|+++.
T Consensus 94 s~~le~ke~ald~Le~lve~--iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~ 170 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVED--IDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALSK 170 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHh--hhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence 45788888999999888776 788899999999999999999999 899999999999999999999999999999999
Q ss_pred HHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccc-cchhHHHHHHHHHHHhhcCCCC-CChhh
Q 043676 93 FVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEH-AKLSMLRNATRTLSNFCRGKPE-PPFDQ 169 (446)
Q Consensus 93 L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~-~~~~~ 169 (446)
|+..+.+ .+..++..|+.+++.+....+.....+...++...|...+... .+..+++.++..+..+...... .....
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~ 250 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS 250 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 9999987 4567889999999999999988888899999999999999432 6788999999999999888733 33333
Q ss_pred hhhhHHHHHHhhcCCCHhHHHHHHHHHHHhcc
Q 043676 170 VRPALPALAQLVHSNDEDVLTYACWSLSYLAD 201 (446)
Q Consensus 170 ~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~ 201 (446)
..++...+..+....+.++.+.++.++..+..
T Consensus 251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 251 SLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 34555566666667788888888887776553
No 54
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.25 E-value=9.5e-12 Score=111.87 Aligned_cols=265 Identities=17% Similarity=0.132 Sum_probs=185.6
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHH--HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC
Q 043676 88 GAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCR--DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEP 165 (446)
Q Consensus 88 ~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~--~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 165 (446)
-++..+++.|+++.+.+|+.|+...+.++..-..|. ..+...|. .|..-+ ....+++.-..+.+++.+.......
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhccc
Confidence 356788889999999999999999988873222111 12222222 344445 5567888888888887776654332
Q ss_pred Ch-hhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcC
Q 043676 166 PF-DQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG 244 (446)
Q Consensus 166 ~~-~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~ 244 (446)
.+ .-..+++|.+..+|++...++..+.+..++.++...++....---..+.--|+..|++.+.++|..|...++.++..
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 22 24578999999999999999999999999999988775433211123334567777888899999999999888763
Q ss_pred CchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHH
Q 043676 245 DDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAI 323 (446)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL 323 (446)
-.. ..++..|+.-|+.. +...|.....+++-.+.. .+. .++|.|+.=....+..++.-.+.++
T Consensus 761 iGP-------qdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cgpf--------sVlP~lm~dY~TPe~nVQnGvLkam 824 (975)
T COG5181 761 IGP-------QDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCGPF--------SVLPTLMSDYETPEANVQNGVLKAM 824 (975)
T ss_pred cCH-------HHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcCch--------hhHHHHHhcccCchhHHHHhHHHHH
Confidence 222 23566677777766 555555555555544431 121 3678887777777889999999999
Q ss_pred HHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676 324 SNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVG 373 (446)
Q Consensus 324 ~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 373 (446)
+.+..........++.. ..|.|.+.|.+.|+--+..+...+..+.-.+
T Consensus 825 ~fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 825 CFMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred HHHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 99988765555555443 5778888889999999999999888876543
No 55
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.4e-08 Score=94.85 Aligned_cols=364 Identities=14% Similarity=0.123 Sum_probs=220.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHH
Q 043676 6 ALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVI 85 (446)
Q Consensus 6 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 85 (446)
.+.+.|++.+..+.-.|+.+|.++++. + ++. .+.|..-+++++++ +-++..|+.|...+....|+..+.+
T Consensus 111 slknDL~s~nq~vVglAL~alg~i~s~---E----mar-dlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f- 180 (866)
T KOG1062|consen 111 SLKNDLNSSNQYVVGLALCALGNICSP---E----MAR-DLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF- 180 (866)
T ss_pred HHHhhccCCCeeehHHHHHHhhccCCH---H----HhH-HhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh-
Confidence 344556677777777777777776653 2 111 45677777788877 7888888888888777666655443
Q ss_pred hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc--------------ccchhHHHHH
Q 043676 86 DHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE--------------HAKLSMLRNA 151 (446)
Q Consensus 86 ~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--------------~~~~~~~~~a 151 (446)
++...++|.+.+..|...++..+..+|..++..-..+.+ .++.++..|++ -++|-++..+
T Consensus 181 ----~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~i 254 (866)
T KOG1062|consen 181 ----VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRI 254 (866)
T ss_pred ----hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHH
Confidence 566667777777777777777777777665544333332 45555555521 1245567777
Q ss_pred HHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC------CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC
Q 043676 152 TRTLSNFCRGKPEPPFDQVRPALPALAQLVHSN------DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH 225 (446)
Q Consensus 152 ~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~------~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~ 225 (446)
++.|.-+-++++. ...... ..|.+...+. -..+...+..++..+-....-+. -++..|-++|.+
T Consensus 255 LrlLriLGq~d~d-aSd~M~---DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lrv------lainiLgkFL~n 324 (866)
T KOG1062|consen 255 LRLLRILGQNDAD-ASDLMN---DILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRV------LAINILGKFLLN 324 (866)
T ss_pred HHHHHHhcCCCcc-HHHHHH---HHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHH------HHHHHHHHHhcC
Confidence 7777777666422 111122 2233333321 24566666666666554433211 345677778888
Q ss_pred CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHH
Q 043676 226 PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIV 305 (446)
Q Consensus 226 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~ 305 (446)
.+..+|..|+..|.......+...+.- =..++++|+++ +..+|..|...+..+... .++. .++..|+
T Consensus 325 ~d~NirYvaLn~L~r~V~~d~~avqrH-----r~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~-----~mv~eLl 391 (866)
T KOG1062|consen 325 RDNNIRYVALNMLLRVVQQDPTAVQRH-----RSTILECLKDP-DVSIKRRALELSYALVNE--SNVR-----VMVKELL 391 (866)
T ss_pred CccceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHH-----HHHHHHH
Confidence 888888888888888887666544432 35689999999 999999999988888543 3333 2566789
Q ss_pred HHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCc
Q 043676 306 NLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGD 385 (446)
Q Consensus 306 ~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 385 (446)
..|...+++.+...+.-+..++..-.|+.+=+ +..+...+...-.-++..+...+..++..+....+- +.
T Consensus 392 ~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~------idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~----y~ 461 (866)
T KOG1062|consen 392 EFLESSDEDFKADIASKIAELAEKFAPDKRWH------IDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHE----YA 461 (866)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhcCCcchhH------HHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhh----HH
Confidence 99998899999999999998887655544322 455556665544334443343444443333111100 00
Q ss_pred cchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043676 386 VNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYW 425 (446)
Q Consensus 386 ~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 425 (446)
...+...+.+. .++.-+.+.+..-|.|+|..|-
T Consensus 462 ~~rLy~a~~~~-------~~~~is~e~l~qVa~W~IGEYG 494 (866)
T KOG1062|consen 462 VLRLYLALSED-------TLLDISQEPLLQVASWCIGEYG 494 (866)
T ss_pred HHHHHHHHhhh-------hhhhhhhhhHHHHHHHHhhhhh
Confidence 01111111111 1333444556788889998875
No 56
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=8.3e-09 Score=95.96 Aligned_cols=300 Identities=15% Similarity=0.186 Sum_probs=216.5
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC--CHhHHHHHHHHHHHhccCCc----
Q 043676 131 ALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSN--DEDVLTYACWSLSYLADGTN---- 204 (446)
Q Consensus 131 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~~~~~l~~l~~~~~---- 204 (446)
.|+.|+.....++-.+=|+.|+..|..+++.. +..+...+++.+++.|+.+ |+++...++.++.++..+.+
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~srkY---R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v 99 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRKY---REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV 99 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHH---HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence 47788888866677788999999999998763 2334466788888888865 89999999999999987653
Q ss_pred --HHH----------HH-HHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH--hcCChHHHHHHhccCc
Q 043676 205 --DKI----------QA-VIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCII--NHGAVPYLLDMLVHNH 269 (446)
Q Consensus 205 --~~~----------~~-~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~~l~~~l~~~~ 269 (446)
+.. .. +...+.+..++..+...+..||..+...+.++.++.+...+..+ ..-++..++.+|.+.
T Consensus 100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds- 178 (970)
T KOG0946|consen 100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS- 178 (970)
T ss_pred cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh-
Confidence 111 11 22347889999999999999999999999999876665544443 567899999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC---C-cchHHHHHHHHHHhccCCCHHHHHHHHHcCChH
Q 043676 270 EEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA---E-FDTKKEAAWAISNATSGGTQEQIKHLVREGCVK 345 (446)
Q Consensus 270 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~-~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~ 345 (446)
...+|.+++..|+.++.+++...+.+.=.+++..|+.++..+ + .-|...|+..+.|+..++ ..+...|.+.+.++
T Consensus 179 rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N-~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 179 REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN-ISNQNFFREGSYIP 257 (970)
T ss_pred hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC-cchhhHHhccccHH
Confidence 889999999999999988776655555568999999999864 2 368889999999999874 45567778889999
Q ss_pred HHHhcccC---CCH--------HH--HHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCC--
Q 043676 346 PLCDLLLC---SDP--------EI--VTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDN-- 410 (446)
Q Consensus 346 ~L~~ll~~---~~~--------~~--~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~-- 410 (446)
.|..+|.. .|. .+ ...++.++..++.-+... +..+...+.+..+++++.|..+..|+.
T Consensus 258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~-------~~~~q~qk~l~ss~ll~~Lc~il~~~~vp 330 (970)
T KOG0946|consen 258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTS-------SITHQNQKALVSSHLLDVLCTILMHPGVP 330 (970)
T ss_pred HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcH-------HHHHHHHHHHHHcchHHHHHHHHcCCCCc
Confidence 99988753 221 12 233455555555432222 122223478899999999999987773
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccccccccccC
Q 043676 411 NEIHEKSVKIFKTYWCGRNEEEDALGSNVITN 442 (446)
Q Consensus 411 ~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 442 (446)
.+|...+.-.......+...--.++++-++.+
T Consensus 331 ~dIltesiitvAevVRgn~~nQ~~F~~v~~p~ 362 (970)
T KOG0946|consen 331 ADILTESIITVAEVVRGNARNQDEFADVTAPS 362 (970)
T ss_pred HhHHHHHHHHHHHHHHhchHHHHHHhhccCCC
Confidence 55666655555555544444334444444443
No 57
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.4e-07 Score=89.15 Aligned_cols=329 Identities=16% Similarity=0.178 Sum_probs=228.1
Q ss_pred HHHHHHHHHHHHhcCCCCCcH----HHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHH
Q 043676 18 LQLEATTLSRKLLSFDRNPPI----EKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIF 93 (446)
Q Consensus 18 ~~~~a~~~l~~l~~~~~~~~~----~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 93 (446)
-...++.+|.|+.+.. ++-. ....--|..+.+...+.....+.++..|+.++..+.. +.++...+...+.+..|
T Consensus 1741 ~v~m~LtAL~Nli~~n-PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSAN-PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHhhC-cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHH
Confidence 4456889999998874 2211 1122236788888888876658999999999988887 88999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC---CCCChhhh
Q 043676 94 VKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK---PEPPFDQV 170 (446)
Q Consensus 94 ~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~ 170 (446)
+.+|.+ .|..|+.++.+|+.+++.. +......+.|++..+..++..+.+++.+.+++..+..+..+. |...+...
T Consensus 1819 L~lLHS-~PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~ 1896 (2235)
T KOG1789|consen 1819 LTLLHS-QPSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLI 1896 (2235)
T ss_pred HHHHhc-ChHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehH
Confidence 999976 5788999999999999554 456667789999999999988888999999999999998876 33333222
Q ss_pred hhhH-----------HHHHHhhcCC--CH------hHHHHHHHHHHHhccC--------------CcHHH----------
Q 043676 171 RPAL-----------PALAQLVHSN--DE------DVLTYACWSLSYLADG--------------TNDKI---------- 207 (446)
Q Consensus 171 ~~~~-----------~~l~~ll~~~--~~------~v~~~~~~~l~~l~~~--------------~~~~~---------- 207 (446)
...- ...+.++... ++ ..+...-..+..++.. -++..
T Consensus 1897 kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~ 1976 (2235)
T KOG1789|consen 1897 KFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKEC 1976 (2235)
T ss_pred HhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCc
Confidence 2222 2233444321 22 2223333333333210 00000
Q ss_pred -------HHH-------------HHhCcHHHHHHhcCCCCcc--chhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHh
Q 043676 208 -------QAV-------------IEAGVCPRLVELLGHPSPS--VLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDML 265 (446)
Q Consensus 208 -------~~~-------------~~~~~~~~l~~ll~~~~~~--~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l 265 (446)
+.+ +-.++++.+..++..+.++ ....-..++-.|.+..+...+.+-..|.+|.++..+
T Consensus 1977 aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am 2056 (2235)
T KOG1789|consen 1977 AVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAM 2056 (2235)
T ss_pred ccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHH
Confidence 000 1114556666666654443 222333445556667777777777889999999998
Q ss_pred ccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChH
Q 043676 266 VHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVK 345 (446)
Q Consensus 266 ~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~ 345 (446)
... +..+-..|++.|..++. +.-+...+.....+..+++.++.. +....-|+.+|..+......+...+....|.++
T Consensus 2057 ~~~-n~s~P~SaiRVlH~Lse-n~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvp 2133 (2235)
T KOG1789|consen 2057 CLQ-NTSAPRSAIRVLHELSE-NQFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVP 2133 (2235)
T ss_pred Hhc-CCcCcHHHHHHHHHHhh-ccHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHH
Confidence 777 66667889999999964 466677777777777788877644 555668999999998876666777778889999
Q ss_pred HHHhcccC
Q 043676 346 PLCDLLLC 353 (446)
Q Consensus 346 ~L~~ll~~ 353 (446)
.|.++|+.
T Consensus 2134 yLL~LLd~ 2141 (2235)
T KOG1789|consen 2134 YLLQLLDS 2141 (2235)
T ss_pred HHHHHhcc
Confidence 99999975
No 58
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=1.7e-08 Score=94.23 Aligned_cols=377 Identities=18% Similarity=0.176 Sum_probs=246.8
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV 83 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 83 (446)
+|.+++.....|-.++...-..+.+.+... +.. ..++++.+++=..+++ +.+|..|++.++.+.- +....
T Consensus 51 F~dvvk~~~T~dlelKKlvyLYl~nYa~~~--P~~----a~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~e- 120 (734)
T KOG1061|consen 51 FPDVVKCMQTRDLELKKLVYLYLMNYAKGK--PDL----AILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKITE- 120 (734)
T ss_pred hHHHHhhcccCCchHHHHHHHHHHHhhccC--chH----HHhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHHH-
Confidence 566677777777777777777777766653 211 1246777777777888 8888888888777654 22222
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 043676 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP 163 (446)
Q Consensus 84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 163 (446)
.....+.+.+++.++.+|..+..+..++-..++. .....|.++.|-.++ .+.++.+..+|+.+|..+....+
T Consensus 121 ----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~---~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 121 ----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPD---LVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred ----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCChh---hccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHhCC
Confidence 2368889999999999999999999998866543 566788899999998 68899999999999999998875
Q ss_pred C-CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhh
Q 043676 164 E-PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV 242 (446)
Q Consensus 164 ~-~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~ 242 (446)
. .........+..++..+...++.-+..++.++.+-...++.... .++..+...+.+.+..+...+...+.++.
T Consensus 193 ~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~~ 267 (734)
T KOG1061|consen 193 SVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQLV 267 (734)
T ss_pred CCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHHHH
Confidence 3 44444456666677777666666777777777665554442333 55677888888888888888888888887
Q ss_pred cCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHH-------------------------HHHH
Q 043676 243 TGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQ-------------------------AVID 297 (446)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~-------------------------~~~~ 297 (446)
...+... ..+-...-+.++.++... . +++.-|..-+.-+....++... .+..
T Consensus 268 ~~~~~~~-~~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~ 344 (734)
T KOG1061|consen 268 KYLKQVN-ELLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELAN 344 (734)
T ss_pred HHHHHHH-HHHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhh
Confidence 6554422 233334556666666655 3 4444444333333322222111 0010
Q ss_pred -cC---ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676 298 -AG---LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVG 373 (446)
Q Consensus 298 -~~---~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 373 (446)
.+ ++..+...-...|.+...++++|+++++....+. ++++..|.++++.....+...++..+..+++..
T Consensus 345 ~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell~~~~~yvvqE~~vvi~dilRky 417 (734)
T KOG1061|consen 345 DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELLETKVDYVVQEAIVVIRDILRKY 417 (734)
T ss_pred HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHHhhcccceeeehhHHHHhhhhcC
Confidence 00 2222333333347788899999999998753322 568999999999877777777888889888887
Q ss_pred hhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 043676 374 EAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNE 430 (446)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 430 (446)
++.. ...+. ..-..+-+-++|+.+..-.|++.+|-+.-++
T Consensus 418 P~~~------------~~vv~-----~l~~~~~sl~epeak~amiWilg~y~~~i~~ 457 (734)
T KOG1061|consen 418 PNKY------------ESVVA-----ILCENLDSLQEPEAKAALIWILGEYAERIEN 457 (734)
T ss_pred CCch------------hhhhh-----hhcccccccCChHHHHHHHHHHhhhhhccCc
Confidence 7652 11111 0011223345566666777777776655544
No 59
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.12 E-value=5.6e-09 Score=92.61 Aligned_cols=227 Identities=15% Similarity=0.172 Sum_probs=161.4
Q ss_pred hHHHHHHhccc-cchhHHHHHHHHHHHhhcCCCCCChhhhh-------hhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC
Q 043676 132 LIPLLAELNEH-AKLSMLRNATRTLSNFCRGKPEPPFDQVR-------PALPALAQLVHSNDEDVLTYACWSLSYLADGT 203 (446)
Q Consensus 132 i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-------~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~ 203 (446)
...+++++... .+.++.+.++..+..+..+.+........ .....++.++.++|..+...++..+..+....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 55666777655 78899999999999999887644332221 24566777888999999999999999998776
Q ss_pred cHHHHHHHHhCcHHHHHHhcCC----CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHh------ccCchHHH
Q 043676 204 NDKIQAVIEAGVCPRLVELLGH----PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDML------VHNHEEII 273 (446)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~ll~~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l------~~~~~~~v 273 (446)
+....... .+.++.+++.+.+ ++..++..++.++.++.. .+..+..+.+.++++.+..++ .+.....+
T Consensus 137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 65444322 3556666666654 455677889999999986 677888899999999999999 44447788
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-CcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhccc
Q 043676 274 KKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA-EFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL 352 (446)
Q Consensus 274 ~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~ 352 (446)
+.+++.+++-++. +++....+.+.++++.|.++++.. ..++.+-++.++.|+...........++..|+++.+..+..
T Consensus 215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 8999999999964 578888888888999999999865 67899999999999998866557788888777776666654
Q ss_pred C--CCHHHHHH
Q 043676 353 C--SDPEIVTV 361 (446)
Q Consensus 353 ~--~~~~~~~~ 361 (446)
. .|+++.+.
T Consensus 294 rk~~Dedl~ed 304 (312)
T PF03224_consen 294 RKWSDEDLTED 304 (312)
T ss_dssp S--SSHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 3 68887765
No 60
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.11 E-value=4.5e-09 Score=93.24 Aligned_cols=230 Identities=16% Similarity=0.232 Sum_probs=166.4
Q ss_pred HHHHHhhc--CCCHhHHHHHHHHHHHhccCCcHHHHHHHHh------CcHHHHHHhcCCCCccchhHHHHHHHHhhcCCc
Q 043676 175 PALAQLVH--SNDEDVLTYACWSLSYLADGTNDKIQAVIEA------GVCPRLVELLGHPSPSVLTPALRTVGNIVTGDD 246 (446)
Q Consensus 175 ~~l~~ll~--~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~------~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~ 246 (446)
..++.+++ +.++++..+++..+..+....+.....+... .....+++++.++|..+...|+.+++.+....+
T Consensus 58 ~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~ 137 (312)
T PF03224_consen 58 SLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGP 137 (312)
T ss_dssp ----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC
Confidence 33444444 4689999999999999998877666655542 357788889999999999999999999988766
Q ss_pred hhhHHHHhcCChHHHHHHhcc----CchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH-----hc--CCcch
Q 043676 247 FQTQCIINHGAVPYLLDMLVH----NHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLL-----QN--AEFDT 315 (446)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~l~~----~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll-----~~--~~~~v 315 (446)
....... .+.++.++.++.+ + +..++..++.++.++.. .++.+..+.+.++++.+.+++ .+ .+..+
T Consensus 138 ~~~~~~~-~~~l~~ll~~L~~~l~~~-~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 138 KRSEKLV-KEALPKLLQWLSSQLSSS-DSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp T--HHHH-HHHHHHHHHHHH-TT-HH-HH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred ccccchH-HHHHHHHHHHHHHhhcCC-CcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 5444322 3456777777654 3 56677889999999964 578888898999999999999 22 25688
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC-CCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHH
Q 043676 316 KKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC-SDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVE 394 (446)
Q Consensus 316 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 394 (446)
+.+++.++.-++. +++....+...+.++.|.++++. ..+++...++.++.|++....+. +...+.
T Consensus 215 ~Y~~ll~lWlLSF--~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~------------~~~~mv 280 (312)
T PF03224_consen 215 QYQALLCLWLLSF--EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS------------NIELMV 280 (312)
T ss_dssp HHHHHHHHHHHTT--SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT------------HHHHHH
T ss_pred HHHHHHHHHHHhc--CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH------------HHHHHH
Confidence 8999999999987 68888898888899999999965 56789999999999999876653 467888
Q ss_pred HhChHHHHHHhhcCC--CHHHHHHHHHHH
Q 043676 395 EAGGLEKIENLQSHD--NNEIHEKSVKIF 421 (446)
Q Consensus 395 ~~~~~~~l~~l~~~~--~~~v~~~a~~~l 421 (446)
..|+++.++.|.... ++++.+--..+-
T Consensus 281 ~~~~l~~l~~L~~rk~~Dedl~edl~~L~ 309 (312)
T PF03224_consen 281 LCGLLKTLQNLSERKWSDEDLTEDLEFLK 309 (312)
T ss_dssp HH-HHHHHHHHHSS--SSHHHHHHHHHHH
T ss_pred HccHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 899999999998664 788776554443
No 61
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.06 E-value=1.2e-07 Score=85.30 Aligned_cols=353 Identities=13% Similarity=0.033 Sum_probs=217.7
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCC-ChhhHHHHH
Q 043676 7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASG-TSENTNVVI 85 (446)
Q Consensus 7 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~ 85 (446)
..+.|+|..|..-..|+..+..++.-+ -++. . =.|++..+++....+.....+.+++.+++.++.. .|+......
T Consensus 99 al~aL~s~epr~~~~Aaql~aaIA~~E-lp~~-~--wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~s 174 (858)
T COG5215 99 ALRALKSPEPRFCTMAAQLLAAIARME-LPNS-L--WPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMS 174 (858)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHhh-Cccc-c--chHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHh
Confidence 356678888888888888888877654 1110 0 0144555566655555578999999999999972 232222211
Q ss_pred hcCChHHHHH-hhCC-CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHh---ccccchhHHHHHHHHHHHhhc
Q 043676 86 DHGAVPIFVK-LLSS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAEL---NEHAKLSMLRNATRTLSNFCR 160 (446)
Q Consensus 86 ~~~~i~~L~~-~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l---~~~~~~~~~~~a~~~L~~l~~ 160 (446)
+.++-.++. .++. ++..+|-.++.+|.+-+.. .+..+...+-...+++.. .+.++.+++..+..||..+..
T Consensus 175 -N~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f---v~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~ 250 (858)
T COG5215 175 -NVILFAIVMGALKNETTSAVRLAALKALMDSLMF---VQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMM 250 (858)
T ss_pred -hHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH---HHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHH
Confidence 223333333 3443 6788999999999873311 222222222223333322 267789999999999988765
Q ss_pred CC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHH-------------H---HHhCcHHHHHHhc
Q 043676 161 GK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQA-------------V---IEAGVCPRLVELL 223 (446)
Q Consensus 161 ~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~-------------~---~~~~~~~~l~~ll 223 (446)
-. ..-......-........+++.++++...+...-..++....+..-. + .-.+++|.|+++|
T Consensus 251 LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL 330 (858)
T COG5215 251 LYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLL 330 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHH
Confidence 43 11111122333445556778889999999988887777432111100 0 0125788899998
Q ss_pred CC-------CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 043676 224 GH-------PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVI 296 (446)
Q Consensus 224 ~~-------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 296 (446)
.. +++.+...|..||.-.+....+ .+++ .++..+-.-++++ +..-|+.|+.+++.+..+..+....-+
T Consensus 331 ~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---~i~~-pVl~FvEqni~~~-~w~nreaavmAfGSvm~gp~~~~lT~~ 405 (858)
T COG5215 331 EKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---KIMR-PVLGFVEQNIRSE-SWANREAAVMAFGSVMHGPCEDCLTKI 405 (858)
T ss_pred HhcCCCccccccchhhhHHHHHHHHHHHhhh---HhHH-HHHHHHHHhccCc-hhhhHHHHHHHhhhhhcCccHHHHHhh
Confidence 76 3566777788888776653332 2222 2455555667777 899999999999999876555444444
Q ss_pred HcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhc-c--cCCCHHHHHHHHHHHHHHHHhh
Q 043676 297 DAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDL-L--LCSDPEIVTVCLIGLENILKVG 373 (446)
Q Consensus 297 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l-l--~~~~~~~~~~~~~~l~~l~~~~ 373 (446)
-...+|.+...+.+..-.++..++|+++.++.+- ...+-..|-++..++- + -.+.|.+..++.|...++.+.-
T Consensus 406 V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v----a~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~ 481 (858)
T COG5215 406 VPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV----AMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHI 481 (858)
T ss_pred HHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH----HHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhh
Confidence 4478999999998888899999999999997531 1111122223322221 1 1245677778888888887765
Q ss_pred hhh
Q 043676 374 EAE 376 (446)
Q Consensus 374 ~~~ 376 (446)
.+.
T Consensus 482 a~a 484 (858)
T COG5215 482 AKA 484 (858)
T ss_pred hhh
Confidence 444
No 62
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=6.2e-08 Score=87.02 Aligned_cols=355 Identities=10% Similarity=0.055 Sum_probs=222.2
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCCh-hhH
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTS-ENT 81 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~ 81 (446)
.+|+.+.+++..|..+++.|+..+.+++...+.+ ....-+.+...+.++..+++ ..++. ++..+-.+..+-. +..
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~--v~~~Fn~iFdvL~klsaDsd-~~V~~-~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGE--VLVYFNEIFDVLCKLSADSD-QNVRG-GAELLDRLIKDIVTESA 160 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccC--cccchHHHHHHHHHHhcCCc-ccccc-HHHHHHHHHHHhccccc
Confidence 5788899999999999999999999988764222 22233456777888877777 55554 3333333332110 111
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676 82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG 161 (446)
Q Consensus 82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 161 (446)
..+-=.++++.|-.-+...++..|...+.-+..+-...+ ..-.-.-...++-+.++| .+.+.+++..+-.+++++...
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~-~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~e 238 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD-LEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFLAE 238 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc-HHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHH
Confidence 112112345555555555788888887777766653322 211111112456677778 677788887777777766554
Q ss_pred C-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCcc-chhHHHHHH-
Q 043676 162 K-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPS-VLTPALRTV- 238 (446)
Q Consensus 162 ~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-~~~~a~~~l- 238 (446)
- ...........++.++.-++++++.++..++.-+.....-.+... ...-.|++..++.++.+.++. ++..+...-
T Consensus 239 I~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~ 317 (675)
T KOG0212|consen 239 IRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKEYAQMVNG 317 (675)
T ss_pred HhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHHHHHHHHH
Confidence 3 223333557788999999999999999999888888887665443 345568888898998887663 444443322
Q ss_pred --HHhhcCCchhhHHHHh-cCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcch
Q 043676 239 --GNIVTGDDFQTQCIIN-HGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDT 315 (446)
Q Consensus 239 --~~l~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 315 (446)
..+.... ...+. ++ ..+++.+...+.++ ..+.|.++..-+..+-...+.. -......+++.|..-+.+.+.++
T Consensus 318 ~l~~l~s~~-~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~q-l~~h~~~if~tLL~tLsd~sd~v 393 (675)
T KOG0212|consen 318 LLLKLVSSE-RLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQ-LLVHNDSIFLTLLKTLSDRSDEV 393 (675)
T ss_pred HHHHHHhhh-hhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcch-hhhhccHHHHHHHHhhcCchhHH
Confidence 2222211 11111 21 23567778888888 8889988886666664433332 22334578999999999999999
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676 316 KKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVG 373 (446)
Q Consensus 316 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 373 (446)
...++..+.+++...+..+... ++..|.++...+..-+...+--++.+++-.-
T Consensus 394 vl~~L~lla~i~~s~~~~~~~~-----fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL 446 (675)
T KOG0212|consen 394 VLLALSLLASICSSSNSPNLRK-----FLLSLLEMFKEDTKLLEVRGNLIIRQLCLLL 446 (675)
T ss_pred HHHHHHHHHHHhcCcccccHHH-----HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHh
Confidence 9999999999998644322222 3444556666555555556666666655443
No 63
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.03 E-value=2.4e-07 Score=88.29 Aligned_cols=314 Identities=17% Similarity=0.217 Sum_probs=201.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH-HH
Q 043676 6 ALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN-VV 84 (446)
Q Consensus 6 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~ 84 (446)
.|++.+.+.|.+.|+.|+.-|.+=+..+ .-..+.--...++..++++|.+.+ .++|..|++|++-+++.-++.+- .+
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le~~ 86 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLETI 86 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 6788899999999999998887655543 222222233467889999999999 89999999999955542211110 00
Q ss_pred H------------------------------------------------------h------------------------
Q 043676 85 I------------------------------------------------------D------------------------ 86 (446)
Q Consensus 85 ~------------------------------------------------------~------------------------ 86 (446)
+ .
T Consensus 87 ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ 166 (1233)
T KOG1824|consen 87 VENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGT 166 (1233)
T ss_pred HHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcc
Confidence 0 0
Q ss_pred ------cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676 87 ------HGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR 160 (446)
Q Consensus 87 ------~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 160 (446)
.+++..++.-+.++...+|..++.+|+.++...+. +. -.+.+..+++-|.........+....+|..+++
T Consensus 167 ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~--~l--y~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r 242 (1233)
T KOG1824|consen 167 LLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR--DL--YVELIEHLLKGLSNRTQMSATRTYIQCLAAICR 242 (1233)
T ss_pred cCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH--HH--HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence 00011111122234456788888888888854432 11 123566777777666677778888899999988
Q ss_pred CCCCCChhhhhhhHHHHHHhh---cCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC-----------
Q 043676 161 GKPEPPFDQVRPALPALAQLV---HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHP----------- 226 (446)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~ll---~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~----------- 226 (446)
....+--......+|.+.++. +.+++++++.++.++..+....+..+..+.. .++..+++.+.++
T Consensus 243 ~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~yd~~eDe 321 (1233)
T KOG1824|consen 243 QAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNYDTEEDE 321 (1233)
T ss_pred HhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCCCCccch
Confidence 876665666778899999998 6778999999999999988877765543332 4555555555421
Q ss_pred -----------------------CccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHH
Q 043676 227 -----------------------SPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISN 283 (446)
Q Consensus 227 -----------------------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~ 283 (446)
+|.||++|+.++..+.....+....+.. .+-|.++.-++.. ++.|+.....+...
T Consensus 322 d~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q-~l~p~lI~RfkER-EEnVk~dvf~~yi~ 399 (1233)
T KOG1824|consen 322 DAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQ-TLGPALISRFKER-EENVKADVFHAYIA 399 (1233)
T ss_pred hhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHH-HhCHHHHHHHHHH-hhhHHHHHHHHHHH
Confidence 1368999999999998766555444443 3557788888777 77788776666655
Q ss_pred HhcCC---------HHHH---------HHHHH--cCChHHHHHHHhcCCcchHHHHHHHHHHhcc
Q 043676 284 ITAGN---------REQI---------QAVID--AGLIRPIVNLLQNAEFDTKKEAAWAISNATS 328 (446)
Q Consensus 284 l~~~~---------~~~~---------~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 328 (446)
+.... ++.. ..+.+ .-++..+-+.+++++...+..+...|..+..
T Consensus 400 ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~ 464 (1233)
T KOG1824|consen 400 LLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELIN 464 (1233)
T ss_pred HHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHH
Confidence 54321 1111 11111 1134445555565566666667666666644
No 64
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=3.8e-07 Score=85.52 Aligned_cols=287 Identities=15% Similarity=0.162 Sum_probs=203.1
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV 83 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 83 (446)
.|.+.+.+++.++.++..|+.+..++.... ++... .+++..-++|.+.+ ..+-..++..+..++..+++....
T Consensus 144 apeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~e-----~f~~~~~~lL~ek~-hGVL~~~l~l~~e~c~~~~~~l~~ 216 (866)
T KOG1062|consen 144 APEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLVE-----HFVIAFRKLLCEKH-HGVLIAGLHLITELCKISPDALSY 216 (866)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHHH-----HhhHHHHHHHhhcC-CceeeeHHHHHHHHHhcCHHHHHH
Confidence 466778899999999999999999988864 22222 35667778888888 788889999999999887877777
Q ss_pred HHhcCChHHHHHhhCC---------------CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcccc-----
Q 043676 84 VIDHGAVPIFVKLLSS---------------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA----- 143 (446)
Q Consensus 84 ~~~~~~i~~L~~~L~~---------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~----- 143 (446)
+.+ .++.|+..|++ ++|-++...++.|.-+-.+.+...+.+.+ .|-+...+..
T Consensus 217 fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~ 289 (866)
T KOG1062|consen 217 FRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNA 289 (866)
T ss_pred HHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccc
Confidence 765 55666665542 46889999999999999888776665543 3333332211
Q ss_pred chhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc
Q 043676 144 KLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELL 223 (446)
Q Consensus 144 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll 223 (446)
...+...+..++..+-.+.+ ...-++..|-++|.+.|..+++-++..|......++...+... ..++.+|
T Consensus 290 GnAILYE~V~TI~~I~~~~~-----LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr-----~tIleCL 359 (866)
T KOG1062|consen 290 GNAILYECVRTIMDIRSNSG-----LRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHR-----STILECL 359 (866)
T ss_pred hhHHHHHHHHHHHhccCCch-----HHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHH-----HHHHHHh
Confidence 23466666666665544432 2234567888899999999999999999999988886665333 5689999
Q ss_pred CCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChH
Q 043676 224 GHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NREQIQAVIDAGLIR 302 (446)
Q Consensus 224 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~ 302 (446)
+++|..++..|+.....|...+ +... .+..++..|... ++++|...+..+..++.. .|+.+- .+.
T Consensus 360 ~DpD~SIkrralELs~~lvn~~--Nv~~-----mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W------~id 425 (866)
T KOG1062|consen 360 KDPDVSIKRRALELSYALVNES--NVRV-----MVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRW------HID 425 (866)
T ss_pred cCCcHHHHHHHHHHHHHHhccc--cHHH-----HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchh------HHH
Confidence 9999999999999998888643 3332 467799999888 999999999888888762 333222 244
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHhcc
Q 043676 303 PIVNLLQNAEFDTKKEAAWAISNATS 328 (446)
Q Consensus 303 ~L~~ll~~~~~~v~~~a~~aL~~l~~ 328 (446)
.+.+.+...-.-|+..+...+..+..
T Consensus 426 tml~Vl~~aG~~V~~dv~~nll~LIa 451 (866)
T KOG1062|consen 426 TMLKVLKTAGDFVNDDVVNNLLRLIA 451 (866)
T ss_pred HHHHHHHhcccccchhhHHHHHHHHh
Confidence 55555555444444444444444433
No 65
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.2e-06 Score=72.28 Aligned_cols=363 Identities=14% Similarity=0.138 Sum_probs=237.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCC-C--cHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676 5 PALVAGVWSDDNSLQLEATTLSRKLLSFDRN-P--PIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT 81 (446)
Q Consensus 5 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~-~--~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 81 (446)
|.|-..|..++..++..++..+..+...... . ....+++.++++.++..+..++ .++...|...+..++. .+...
T Consensus 85 pdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpaal 162 (524)
T KOG4413|consen 85 PDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPAAL 162 (524)
T ss_pred HHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHHHH
Confidence 4455567788999999999999888775421 1 1344568899999999999998 8999999999999998 77777
Q ss_pred HHHHhcCChHHHH--HhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 043676 82 NVVIDHGAVPIFV--KLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFC 159 (446)
Q Consensus 82 ~~~~~~~~i~~L~--~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 159 (446)
..+.+.+..+.+- .+-...+.-.|......+..+.+-+++....+...|.+..+..-+....|.-++.+++.....++
T Consensus 163 eaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa 242 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA 242 (524)
T ss_pred HHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH
Confidence 7777776665443 23334567778888999999998889888888899999999888855578888899999999999
Q ss_pred cCCCCCChhhhhhhHHHHHHhhcCC--CHhHHHHHHHHHHHhccCCcH---HHHHHHHh--CcHHHHHHhcCCCCccchh
Q 043676 160 RGKPEPPFDQVRPALPALAQLVHSN--DEDVLTYACWSLSYLADGTND---KIQAVIEA--GVCPRLVELLGHPSPSVLT 232 (446)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~~~~~l~~l~~~~~~---~~~~~~~~--~~~~~l~~ll~~~~~~~~~ 232 (446)
.....+.+....+.++.+..++... +|--.-.++...+.+.....- .-+.+.+. -+++.....+..+++....
T Consensus 243 eteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaie 322 (524)
T KOG4413|consen 243 ETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIE 322 (524)
T ss_pred HHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHH
Confidence 8877777888889999999988743 333333344444443322110 00011111 2344455666778999999
Q ss_pred HHHHHHHHhhcCCchhhHHHHhcCC--hHHHHHHhccCchHHHHHHHHHHHHHHhc---CCHHHH---------HH-HHH
Q 043676 233 PALRTVGNIVTGDDFQTQCIINHGA--VPYLLDMLVHNHEEIIKKEISWIISNITA---GNREQI---------QA-VID 297 (446)
Q Consensus 233 ~a~~~l~~l~~~~~~~~~~~~~~~~--~~~l~~~l~~~~~~~v~~~a~~~l~~l~~---~~~~~~---------~~-~~~ 297 (446)
.|..+++.+.+.. +..+.+.+.|- ...++.-.-+.....-+..+..+|.+++. -.++++ .. +.+
T Consensus 323 aAiDalGilGSnt-eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifd 401 (524)
T KOG4413|consen 323 AAIDALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFD 401 (524)
T ss_pred HHHHHHHhccCCc-chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHH
Confidence 9999999998744 34444554443 33333333232133445667777777764 122211 11 111
Q ss_pred -------cCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCC---CHHHHHHHHHHHH
Q 043676 298 -------AGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCS---DPEIVTVCLIGLE 367 (446)
Q Consensus 298 -------~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~---~~~~~~~~~~~l~ 367 (446)
..-+..+...++...++++..++..+..++.. .......+...++++...+--... ..+-+..+++++.
T Consensus 402 aaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq-PWalkeifakeefieiVtDastEhaKaakdAkYeccKAia 480 (524)
T KOG4413|consen 402 AAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ-PWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIA 480 (524)
T ss_pred HHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC-cHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHH
Confidence 12355566677777899999999999999864 223333444555555554433221 1234455555555
Q ss_pred HHHH
Q 043676 368 NILK 371 (446)
Q Consensus 368 ~l~~ 371 (446)
+-+-
T Consensus 481 eafl 484 (524)
T KOG4413|consen 481 EAFL 484 (524)
T ss_pred HHHH
Confidence 5443
No 66
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=1.4e-08 Score=91.02 Aligned_cols=319 Identities=17% Similarity=0.130 Sum_probs=207.2
Q ss_pred HhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChH
Q 043676 42 IQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR 121 (446)
Q Consensus 42 ~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~ 121 (446)
.-.+++++.+..+.+++ ..++..|+..+.|++. -...........+...+.++..+.+..++..| ..+-.+..+-..
T Consensus 81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaK-v~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVt 157 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAK-VAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVT 157 (675)
T ss_pred HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHH-HhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhcc
Confidence 33467889999999999 8999999999999987 22222222233456778888877777776443 333333311110
Q ss_pred HHHHHHHcCChHHHHHHhc---cccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHH
Q 043676 122 CRDLVLSQGALIPLLAELN---EHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSY 198 (446)
Q Consensus 122 ~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~ 198 (446)
-+.. .--++.++.++. ...++..+...+.-+..+-..++..-.-....+++.|..+|.+++++++..+=.++.+
T Consensus 158 e~~~---tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~ 234 (675)
T KOG0212|consen 158 ESAS---TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSE 234 (675)
T ss_pred cccc---ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 0000 112444444442 4457788888887777776655444444568899999999999999999777666655
Q ss_pred hcc---CCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchH-HHH
Q 043676 199 LAD---GTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEE-IIK 274 (446)
Q Consensus 199 l~~---~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~v~ 274 (446)
+.. +++.. +--...++.++.-+.++++.++..|+..+..+..-.+... ...-+|++..++..+.+. +. .++
T Consensus 235 fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~-e~~~i~ 309 (675)
T KOG0212|consen 235 FLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDT-EEMSIK 309 (675)
T ss_pred HHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCC-ccccHH
Confidence 442 22211 1122677888888999999999999888888876554433 233567778888888776 44 344
Q ss_pred HHHHHH---HHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhc
Q 043676 275 KEISWI---ISNITAGNREQIQAVID-AGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDL 350 (446)
Q Consensus 275 ~~a~~~---l~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l 350 (446)
..+... +..++. .+..... ++ ..+++.+.+.+.+...+.|..++.-+..+..... .+.-. ......+.|..-
T Consensus 310 ~~a~~~n~~l~~l~s-~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p-~ql~~-h~~~if~tLL~t 385 (675)
T KOG0212|consen 310 EYAQMVNGLLLKLVS-SERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP-GQLLV-HNDSIFLTLLKT 385 (675)
T ss_pred HHHHHHHHHHHHHHh-hhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc-chhhh-hccHHHHHHHHh
Confidence 443322 222222 1221112 22 2367888888888888999999988888866533 22222 234578889999
Q ss_pred ccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676 351 LLCSDPEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 351 l~~~~~~~~~~~~~~l~~l~~~~~~ 375 (446)
|++++.++...++..+..++.....
T Consensus 386 Lsd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 386 LSDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred hcCchhHHHHHHHHHHHHHhcCccc
Confidence 9999999999999999998876554
No 67
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=1.1e-06 Score=80.46 Aligned_cols=347 Identities=14% Similarity=0.103 Sum_probs=224.9
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676 45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD 124 (446)
Q Consensus 45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~ 124 (446)
.++..+.+-+..+. +.+|.....||..+......... ..+.+.+.+++....-.-+..+.+.++.+..+... .
T Consensus 96 ~~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~ 168 (569)
T KOG1242|consen 96 SIIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--E 168 (569)
T ss_pred HHHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--h
Confidence 35677778888888 89999988888777652111111 12456777888888888888899999888866543 3
Q ss_pred HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCc
Q 043676 125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTN 204 (446)
Q Consensus 125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~ 204 (446)
...+.+.+..+...+....+..-++.+..+....+..-........-..+|.+...+.+....+|..+..+...+...-+
T Consensus 169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~ 248 (569)
T KOG1242|consen 169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS 248 (569)
T ss_pred hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence 45566778888887733333333333444444433332222222334566666677777789999998888877664433
Q ss_pred HHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHH
Q 043676 205 DKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNI 284 (446)
Q Consensus 205 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l 284 (446)
... ++ .+++.++.-+....++.+..++..++.++...+.+.. ..-..++|.+.+.|.+. .+++|+.+..++.++
T Consensus 249 ~~a---VK-~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 249 AYA---VK-LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKF 322 (569)
T ss_pred cch---hh-HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 211 11 2334444444444888999999999999987776554 44567999999999999 999999999999999
Q ss_pred hc--CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhc--cCCCHHHHHHHHHcCChHHHHhcccCCCHHHHH
Q 043676 285 TA--GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNAT--SGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT 360 (446)
Q Consensus 285 ~~--~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~--~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~ 360 (446)
+. .+++ ++ .++|.|++.+.+....+ ..+...|+.-. ..-++..... .+|.|.+-+...+..+..
T Consensus 323 ~svidN~d-I~-----~~ip~Lld~l~dp~~~~-~e~~~~L~~ttFV~~V~~psLal-----mvpiL~R~l~eRst~~kr 390 (569)
T KOG1242|consen 323 GSVIDNPD-IQ-----KIIPTLLDALADPSCYT-PECLDSLGATTFVAEVDAPSLAL-----MVPILKRGLAERSTSIKR 390 (569)
T ss_pred HHhhccHH-HH-----HHHHHHHHHhcCcccch-HHHHHhhcceeeeeeecchhHHH-----HHHHHHHHHhhccchhhh
Confidence 76 3443 22 36788888887665333 23444443221 1111111111 366677777788888889
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 043676 361 VCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGR 428 (446)
Q Consensus 361 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 428 (446)
.+..++.|++..-++.+. ....+.+ .++.++.......|+++..+.+.+....+..
T Consensus 391 ~t~~IidNm~~LveDp~~----------lapfl~~--Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~ 446 (569)
T KOG1242|consen 391 KTAIIIDNMCKLVEDPKD----------LAPFLPS--LLPGLKENLDDAVPEVRAVAARALGALLERL 446 (569)
T ss_pred hHHHHHHHHHHhhcCHHH----------HhhhHHH--HhhHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 999999999887644331 2233321 2566777777789999999999986665433
No 68
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.5e-06 Score=79.79 Aligned_cols=346 Identities=16% Similarity=0.147 Sum_probs=223.6
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV 83 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 83 (446)
+..+++-+..+.+++|.....++..+......... ..+.+.+.+++.... ..-+..+++.+..+..+ .....
T Consensus 98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~-----~~~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g--~~i~~ 169 (569)
T KOG1242|consen 98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG-----EYVLELLLELLTSTK-IAERAGAAYGLAGLVNG--LGIES 169 (569)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH-----HHHHHHHHHHhcccc-HHHHhhhhHHHHHHHcC--cHHhh
Confidence 45666677778889999888888876543211111 235677888888777 68888899998888863 33445
Q ss_pred HHhcCChHHHHHhhCCCCHHHHH-HHHHHHHHhhCC-ChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676 84 VIDHGAVPIFVKLLSSPSDDVRE-QAVWALGNVAGD-SPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG 161 (446)
Q Consensus 84 ~~~~~~i~~L~~~L~~~~~~v~~-~a~~~l~~l~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 161 (446)
+.+.+++..+.+...+.....++ .++.+....+.. .+.....+.. .++.++... .+..+.++..+..+...+...
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~--~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~~ 246 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVP--ILPSILTNF-GDKINKVREAAVEAAKAIMRC 246 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHh--hHHHHHHHh-hccchhhhHHHHHHHHHHHHh
Confidence 56678899999999885544433 333333222211 1111011111 234444444 455678888888777766554
Q ss_pred CCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHh
Q 043676 162 KPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241 (446)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l 241 (446)
-+. .....++|.++.-+....+.....++..++.++...+.... ..-..++|.+...|-+..+.++..+..++.++
T Consensus 247 ~~~---~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 247 LSA---YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKF 322 (569)
T ss_pred cCc---chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 321 12234455555555555788889999999999988776654 55669999999999999999999999999999
Q ss_pred hcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCCcchHHH
Q 043676 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA---GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKE 318 (446)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~ 318 (446)
+..-+.. . + ..+++.+++.+.++ ...+ .++...|+.-.. -.+.... -++|.|.+-+...+..+++.
T Consensus 323 ~svidN~-d--I-~~~ip~Lld~l~dp-~~~~-~e~~~~L~~ttFV~~V~~psLa-----lmvpiL~R~l~eRst~~kr~ 391 (569)
T KOG1242|consen 323 GSVIDNP-D--I-QKIIPTLLDALADP-SCYT-PECLDSLGATTFVAEVDAPSLA-----LMVPILKRGLAERSTSIKRK 391 (569)
T ss_pred HHhhccH-H--H-HHHHHHHHHHhcCc-ccch-HHHHHhhcceeeeeeecchhHH-----HHHHHHHHHHhhccchhhhh
Confidence 7633211 1 1 12678899999887 4222 233333332211 0111111 14566666666778899999
Q ss_pred HHHHHHHhccCC-CHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhh
Q 043676 319 AAWAISNATSGG-TQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAE 376 (446)
Q Consensus 319 a~~aL~~l~~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~ 376 (446)
++..+.|++.-- ++.....++. ..+|.+-..+.+..|++|..+..+|..+.+.....
T Consensus 392 t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 392 TAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGALLERLGEV 449 (569)
T ss_pred HHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh
Confidence 999999998754 3444333332 26778888888889999999999998887765544
No 69
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=8.1e-07 Score=82.33 Aligned_cols=257 Identities=14% Similarity=0.172 Sum_probs=189.0
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676 45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD 124 (446)
Q Consensus 45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~ 124 (446)
++-+-++.+|.+.. +-+|..|+..+..+....|+... ..++.|..-|.++++.|+..|+.+++.|+..+|..--
T Consensus 144 DLa~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 144 DLADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 45567788999998 89999999999999886665443 3479999999999999999999999999988875421
Q ss_pred HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCC-HhHHHHHHHHHHH--hcc
Q 043676 125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSND-EDVLTYACWSLSY--LAD 201 (446)
Q Consensus 125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~v~~~~~~~l~~--l~~ 201 (446)
..-|.+.++|..+.+.-+....+..++.|+--.|. .-...++.+..++++.. ..+...++.++.. ++.
T Consensus 218 -----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 218 -----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred -----cccHHHHHHHhccCCCeehHHHHHHHhhccccCch----hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 14577888887777888888888888888766543 23467888888888764 5666666666643 333
Q ss_pred CCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHH
Q 043676 202 GTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWII 281 (446)
Q Consensus 202 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l 281 (446)
+.++....+ + -.++.|-.++.+.|+.++.-++.+++.+...++..... .-+.++.+|.+. +..+|..|+..+
T Consensus 289 g~~d~~asi-q-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl 360 (877)
T KOG1059|consen 289 GMSDHSASI-Q-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLL 360 (877)
T ss_pred CCCCcHHHH-H-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHH
Confidence 322222111 1 34677888888999999999999999999877765543 346789999999 999999999998
Q ss_pred HHHhcCCHHHHHHHHHcCChHHHHHHHhcCC-cchHHHHHHHHHHhccCCC
Q 043676 282 SNITAGNREQIQAVIDAGLIRPIVNLLQNAE-FDTKKEAAWAISNATSGGT 331 (446)
Q Consensus 282 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~~ 331 (446)
.-+.. .++... ++..|+..+...+ ...|...+.-+-.++..++
T Consensus 361 ~gmVs--kkNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~sn 404 (877)
T KOG1059|consen 361 YGMVS--KKNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQSN 404 (877)
T ss_pred HHHhh--hhhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhh
Confidence 88754 333332 5666776665444 3777777777777766433
No 70
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.98 E-value=1.5e-07 Score=87.25 Aligned_cols=329 Identities=12% Similarity=0.117 Sum_probs=211.5
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHcCC--ChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHH
Q 043676 48 PRFVEFLMREDYPQLQYEAAWVLINIASG--TSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDL 125 (446)
Q Consensus 48 ~~L~~ll~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 125 (446)
...+..|++.. +.+|.+|+..++.++.- ....-..+...| -.|...|....+++.-..+.++..++....-.+..
T Consensus 802 stiL~rLnnks-a~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 802 STILWRLNNKS-AKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 33455677788 89999999998888751 111112222233 35677888889999887777777766322100001
Q ss_pred HHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh-hhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCc
Q 043676 126 VLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQ-VRPALPALAQLVHSNDEDVLTYACWSLSYLADGTN 204 (446)
Q Consensus 126 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~ 204 (446)
---.+.+|.|.-+| ++....++.+++..+..++...+...... -..+--.|+.+|..-+.++|+.+..+++.++..-.
T Consensus 879 pPi~dllPrltPIL-knrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIG 957 (1172)
T KOG0213|consen 879 PPIKDLLPRLTPIL-KNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIG 957 (1172)
T ss_pred CChhhhcccchHhh-hhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcC
Confidence 11235688888888 78889999999999999999875422211 12333456777888899999999999999886432
Q ss_pred HHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHH
Q 043676 205 DKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNI 284 (446)
Q Consensus 205 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l 284 (446)
. .+++..|+.-|+..+...|....-+++-.+..+... .++|.|+.=-..+ +..|+...+.+++.+
T Consensus 958 P-------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF-------tVLPalmneYrtP-e~nVQnGVLkalsf~ 1022 (1172)
T KOG0213|consen 958 P-------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF-------TVLPALMNEYRTP-EANVQNGVLKALSFM 1022 (1172)
T ss_pred H-------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch-------hhhHHHHhhccCc-hhHHHHhHHHHHHHH
Confidence 2 144555666665555555555555555555443321 3677777777778 888999888888887
Q ss_pred hcC-CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcc-------cCCCH
Q 043676 285 TAG-NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLL-------LCSDP 356 (446)
Q Consensus 285 ~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll-------~~~~~ 356 (446)
... .+-...++.. +.|.|.+.+.+.|.--|+.|..++.+++.+.. -.|+.+.++.+| -+.+|
T Consensus 1023 FeyigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpNIle~sP 1092 (1172)
T KOG0213|consen 1023 FEYIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPNILETSP 1092 (1172)
T ss_pred HHHHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhhhcCCCh
Confidence 542 2222333333 77888888888899999999999999987521 112333333333 35778
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043676 357 EIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYW 425 (446)
Q Consensus 357 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 425 (446)
.+.....+++..+-. .+...-.+....+-+-|+...|++..-.+.+.++
T Consensus 1093 hviqa~~e~~eg~r~--------------------~Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~my 1141 (1172)
T KOG0213|consen 1093 HVIQAFDEAMEGLRV--------------------ALGPQAMLKYCLQGLFHPARKVRKRYWTVYNSMY 1141 (1172)
T ss_pred HHHHHHHHHHHHHHH--------------------HhchHHHHHHHHHhccCcHHHHHHHHHHHHHhHh
Confidence 888877777766432 2222223444555567888888777666666554
No 71
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.98 E-value=1.4e-07 Score=85.03 Aligned_cols=309 Identities=15% Similarity=0.087 Sum_probs=197.9
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHH
Q 043676 14 DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIF 93 (446)
Q Consensus 14 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 93 (446)
.+..+|..++.+|.+-+..-+.....+--.+-++...++.-+.++ .+++..|..||.++..-.........+.-.....
T Consensus 190 t~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d-~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt 268 (858)
T COG5215 190 TTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGND-EELQHAAFGCLNKIMMLYYKFMQSYMENALAALT 268 (858)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888887322211111122222345566677778888 8999999999999987555555566666666777
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHH----------------HHcCChHHHHHHhcc-cc-----chhHHHHH
Q 043676 94 VKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV----------------LSQGALIPLLAELNE-HA-----KLSMLRNA 151 (446)
Q Consensus 94 ~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~----------------~~~~~i~~l~~~l~~-~~-----~~~~~~~a 151 (446)
.+.+++++.++...++...+.+|...-+..-.. .-.+++|.++++|.+ ++ +..+-..|
T Consensus 269 ~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA 348 (858)
T COG5215 269 GRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAA 348 (858)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhH
Confidence 788999999999999999999985332111111 122368889999854 22 23444455
Q ss_pred HHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccch
Q 043676 152 TRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVL 231 (446)
Q Consensus 152 ~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 231 (446)
..||--++..... ......+..+-+-+++++..-++.+..+++.+...+......-+-...+|.+...+.++.--++
T Consensus 349 ~sCLqlfaq~~gd---~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk 425 (858)
T COG5215 349 SSCLQLFAQLKGD---KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVK 425 (858)
T ss_pred HHHHHHHHHHhhh---HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehh
Confidence 5555555443211 1223355555666788899999999999999998877665555555888888888888888899
Q ss_pred hHHHHHHHHhhcCCchhhHHHHhcCChHHHHHH----hccCchHHHHHHHHHHHHHHhcCCHHHH---HHHHH---cCCh
Q 043676 232 TPALRTVGNIVTGDDFQTQCIINHGAVPYLLDM----LVHNHEEIIKKEISWIISNITAGNREQI---QAVID---AGLI 301 (446)
Q Consensus 232 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~~~v~~~a~~~l~~l~~~~~~~~---~~~~~---~~~i 301 (446)
..++||++.++.+-+... -..+.++..++. +. . .+.+...+.|...|++.+-++.. ..++. ..++
T Consensus 426 ~ttAwc~g~iad~va~~i---~p~~Hl~~~vsa~liGl~-D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~ 500 (858)
T COG5215 426 STTAWCFGAIADHVAMII---SPCGHLVLEVSASLIGLM-D-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAIL 500 (858)
T ss_pred hHHHHHHHHHHHHHHHhc---CccccccHHHHHHHhhhh-c-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHH
Confidence 999999999997544322 122333322221 22 2 34677889999999986433322 11111 1234
Q ss_pred HHHHHHHh--cCCcchHHHHHHHHHHhccCCC
Q 043676 302 RPIVNLLQ--NAEFDTKKEAAWAISNATSGGT 331 (446)
Q Consensus 302 ~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~ 331 (446)
..|+...+ ..+...|..+..+|+.+...+.
T Consensus 501 ~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~ 532 (858)
T COG5215 501 NALVKGTELALNESNLRVSLFSALGTLILICP 532 (858)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHhhcc
Confidence 44443332 2356788888899998877644
No 72
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=6.6e-08 Score=90.40 Aligned_cols=343 Identities=16% Similarity=0.133 Sum_probs=219.3
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT 81 (446)
Q Consensus 2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 81 (446)
+.++.+++...++++.+|..|++.+..+ . -+ .+.+ .+...+.+.+++.+ +-+|..++-+..++-.. ..
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l---~-v~---~i~e-y~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~---~~ 153 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCL---R-VD---KITE-YLCDPLLKCLKDDD-PYVRKTAAVCVAKLFDI---DP 153 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeE---e-eh---HHHH-HHHHHHHHhccCCC-hhHHHHHHHHHHHhhcC---Ch
Confidence 4566677777788888888777665532 1 11 1222 35778888999999 89999999999998763 34
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676 82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG 161 (446)
Q Consensus 82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 161 (446)
+.....|.++.|..++.+.++.+..+|+.++..+....+..-.. .....++..+....+.-....-+..|-.++..
T Consensus 154 ~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~----~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y 229 (734)
T KOG1061|consen 154 DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL----ELNPQLINKLLEALNECTEWGQIFILDCLAEY 229 (734)
T ss_pred hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc----cccHHHHHHHHHHHHHhhhhhHHHHHHHHHhc
Confidence 55677899999999999999999999999999998655421001 12223332221222333334445555666666
Q ss_pred CCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHh
Q 043676 162 KPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241 (446)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l 241 (446)
.+... .....++..+...+.+.++.+.-.+...+.++...-..... .+-...-+.++.++.... .+...|+.-+.-+
T Consensus 230 ~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~-~~~~K~~~pl~tlls~~~-e~qyvaLrNi~li 306 (734)
T KOG1061|consen 230 VPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNE-LLFKKVAPPLVTLLSSES-EIQYVALRNINLI 306 (734)
T ss_pred CCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHH-HHHHHhcccceeeecccc-hhhHHHHhhHHHH
Confidence 54444 44456777788888888888887888777777655443222 222256666777776655 5555555555544
Q ss_pred hcCCchhhHHH-------------------------H-hcC---ChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHH
Q 043676 242 VTGDDFQTQCI-------------------------I-NHG---AVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQI 292 (446)
Q Consensus 242 ~~~~~~~~~~~-------------------------~-~~~---~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~ 292 (446)
....+.....- . +++ ++..+...-..- +.+...++++++++++..-++.
T Consensus 307 l~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatev-D~~fvrkaIraig~~aik~e~~- 384 (734)
T KOG1061|consen 307 LQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEV-DVDFVRKAVRAIGRLAIKAEQS- 384 (734)
T ss_pred HHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhh-CHHHHHHHHHHhhhhhhhhhhh-
Confidence 44333211100 0 111 112222222233 5677788999999997642221
Q ss_pred HHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC-CCHHHHHHHHHHHHHHHH
Q 043676 293 QAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC-SDPEIVTVCLIGLENILK 371 (446)
Q Consensus 293 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~~~~~l~~l~~ 371 (446)
++++..|+++++.+-..+..++...+..+..... ..... +++.+...+++ ++|+.+...+|++.....
T Consensus 385 -----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP-~~~~~-----vv~~l~~~~~sl~epeak~amiWilg~y~~ 453 (734)
T KOG1061|consen 385 -----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYP-NKYES-----VVAILCENLDSLQEPEAKAALIWILGEYAE 453 (734)
T ss_pred -----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCC-Cchhh-----hhhhhcccccccCChHHHHHHHHHHhhhhh
Confidence 5799999999998877888888889999887642 22222 45666666654 678899999999988766
Q ss_pred hhhhh
Q 043676 372 VGEAE 376 (446)
Q Consensus 372 ~~~~~ 376 (446)
.-++.
T Consensus 454 ~i~~a 458 (734)
T KOG1061|consen 454 RIENA 458 (734)
T ss_pred ccCcH
Confidence 54443
No 73
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.95 E-value=5.2e-07 Score=82.15 Aligned_cols=332 Identities=12% Similarity=0.111 Sum_probs=214.8
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHcCC--ChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHH
Q 043676 46 VVPRFVEFLMREDYPQLQYEAAWVLINIASG--TSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCR 123 (446)
Q Consensus 46 ~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~ 123 (446)
++...+.+|++.. +.++.+|+...+.++.- ....-..+...| ..|.+-|....+++.-..+.+++.+.....--.
T Consensus 605 ivStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 3445567888888 89999999888777641 111122233333 456677777889998888888877763221100
Q ss_pred HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhh-hhhHHHHHHhhcCCCHhHHHHHHHHHHHhccC
Q 043676 124 DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQV-RPALPALAQLVHSNDEDVLTYACWSLSYLADG 202 (446)
Q Consensus 124 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~ 202 (446)
-.-.-.|++|.+.-+| ++....+..+....+..++...|...-... ..+--.|+.+|.+-+.++++.|...++.++..
T Consensus 682 mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 682 MQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred cCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 0011346788999999 778889999999999999998755322221 33344577888888999999999999998865
Q ss_pred CcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHH
Q 043676 203 TNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIIS 282 (446)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~ 282 (446)
-.. .+++..|+.-|+..+...|....-+++-.+..+.. ..++|.++.=-..+ +..|+...+.+++
T Consensus 761 iGP-------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TP-e~nVQnGvLkam~ 825 (975)
T COG5181 761 IGP-------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETP-EANVQNGVLKAMC 825 (975)
T ss_pred cCH-------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCc-hhHHHHhHHHHHH
Confidence 332 14455666666665555555555555555543332 23677777777777 8888888888888
Q ss_pred HHhcC-CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCC----HHHHHHHHHcCChHHHHhcccCCCHH
Q 043676 283 NITAG-NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGT----QEQIKHLVREGCVKPLCDLLLCSDPE 357 (446)
Q Consensus 283 ~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~----~~~~~~l~~~~~i~~L~~ll~~~~~~ 357 (446)
.+... ......++.. +.|.|-+.+.+.|+--|+.|...+.+++.++. .+..-. .+..|..-+-++.|.
T Consensus 826 fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH-----LlNllwpNIle~sPh 898 (975)
T COG5181 826 FMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH-----LLNLLWPNILEPSPH 898 (975)
T ss_pred HHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH-----HHHHhhhhccCCCcH
Confidence 77542 2333333333 77888888989999999999999999987632 222222 223333334567888
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHH
Q 043676 358 IVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKT 423 (446)
Q Consensus 358 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 423 (446)
+.....+++..+...-.. .-.+..+++=+-|++..++++.-...+.
T Consensus 899 vi~~~~Eg~e~~~~~lg~--------------------g~~m~Yv~qGLFHPs~~VRk~ywtvyn~ 944 (975)
T COG5181 899 VIQSFDEGMESFATVLGS--------------------GAMMKYVQQGLFHPSSTVRKRYWTVYNI 944 (975)
T ss_pred HHHHHHHHHHHHHHHhcc--------------------HHHHHHHHHhccCchHHHHHHHHHHHhh
Confidence 888877777765433221 1123446666788888887665444443
No 74
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.92 E-value=9.4e-08 Score=84.08 Aligned_cols=266 Identities=16% Similarity=0.115 Sum_probs=179.1
Q ss_pred CChHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChh
Q 043676 2 GSFPALVAGVWSDD--NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSE 79 (446)
Q Consensus 2 ~~i~~l~~~l~s~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 79 (446)
|.+..|++++.+++ .+++.++++.|..+... ++.+.+...| +..++.+-+....++.+...+.+|.++..++.+
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 56788999999887 45699999999998774 5566677766 666666666655589999999999999999999
Q ss_pred hHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-CChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 043676 80 NTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAG-DSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF 158 (446)
Q Consensus 80 ~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 158 (446)
....++..|+++.++--.+..++.+..+|..+|+|++. .....+..+++..+-+-|.-+- .+.|+-++.++|.+...+
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence 99999999999999998888899999999999999984 4445666777766655555444 666888999999999999
Q ss_pred hcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHH
Q 043676 159 CRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV 238 (446)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l 238 (446)
+............+.+..+-.++.+-|+.-... ...+..+ -...+.++.|+.+|+++-.+.+..+++-+
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR----------D~hd~aQ-G~~~d~LqRLvPlLdS~R~EAq~i~AF~l 403 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR----------DAHDYAQ-GRGPDDLQRLVPLLDSNRLEAQCIGAFYL 403 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhccCcchhhh----------hhhhhhc-cCChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence 988755555555555555555555544432111 0010000 11114567788888765444443333322
Q ss_pred HHhh--cCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHH
Q 043676 239 GNIV--TGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNI 284 (446)
Q Consensus 239 ~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l 284 (446)
+.=+ .......+.+-+-|.++.|-++..++ +..-.+.|-.+|.-+
T Consensus 404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtvi 450 (832)
T KOG3678|consen 404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVI 450 (832)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHh
Confidence 2111 11111223344668888888888876 554444444455444
No 75
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.88 E-value=8.5e-07 Score=85.52 Aligned_cols=375 Identities=13% Similarity=0.097 Sum_probs=228.8
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcC--CChhhHHHHHh
Q 043676 9 AGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIAS--GTSENTNVVID 86 (446)
Q Consensus 9 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~ 86 (446)
+.-+..++.++..++.-+.+++..-.... ...++++.+..+..++. ..++..|...+.++.. ..+. . ..
T Consensus 244 ~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~----~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~---d-~~ 314 (759)
T KOG0211|consen 244 SLCQDDTPMVRRAVASNLGNIAKVLESEI----VKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD---D-VV 314 (759)
T ss_pred hhccccchhhHHHHHhhhHHHHHHHHHHH----HHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch---h-hh
Confidence 33445556777777776666665543322 22356777777777776 5777777766666654 1120 1 11
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhC----------------------------------------CChHHHHHH
Q 043676 87 HGAVPIFVKLLSSPSDDVREQAVWALGNVAG----------------------------------------DSPRCRDLV 126 (446)
Q Consensus 87 ~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~----------------------------------------~~~~~~~~~ 126 (446)
..+.+.++...++++..++.........+.. .+..+...+
T Consensus 315 ~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i 394 (759)
T KOG0211|consen 315 KSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNI 394 (759)
T ss_pred hhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCccccccc
Confidence 2234555666655555554444433333321 000011111
Q ss_pred HHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHH
Q 043676 127 LSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDK 206 (446)
Q Consensus 127 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~ 206 (446)
....+++.+-.+. .+.+..++...+.....+.--.+ .........|.....+++.++.++.+..+.+..+-...+..
T Consensus 395 ~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~ 471 (759)
T KOG0211|consen 395 PDSSILPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVI 471 (759)
T ss_pred chhhhhHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcc
Confidence 1122222222222 34444454444443333332221 22234567788888899999999999998776655443333
Q ss_pred HHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc
Q 043676 207 IQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA 286 (446)
Q Consensus 207 ~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 286 (446)
-........++.+..+-....++++.+..+.+..++.... ..+++...-+.+...+.+. ...+++.|+..+..++.
T Consensus 472 g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~ 547 (759)
T KOG0211|consen 472 GISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVE 547 (759)
T ss_pred cchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHH
Confidence 3334555778888888877889999999999988886433 3445555666677777776 78899999999988876
Q ss_pred CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHH
Q 043676 287 GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGL 366 (446)
Q Consensus 287 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l 366 (446)
... ........++.++.....++...|...+.++..++...+.+. ..+..++.+.++..++.++|+..+++.|
T Consensus 548 ~~G---~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei----~~~~Llp~~~~l~~D~vanVR~nvak~L 620 (759)
T KOG0211|consen 548 TFG---SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI----TCEDLLPVFLDLVKDPVANVRINVAKHL 620 (759)
T ss_pred HhC---cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH----HHHHHhHHHHHhccCCchhhhhhHHHHH
Confidence 211 112223467777777776678899999999988766433333 3344789999999999999999999999
Q ss_pred HHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHH
Q 043676 367 ENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFK 422 (446)
Q Consensus 367 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~ 422 (446)
..+...-... ..+....+.++.+-.+++.+++-.|..+..
T Consensus 621 ~~i~~~L~~~----------------~~~~~v~pll~~L~~d~~~dvr~~a~~a~~ 660 (759)
T KOG0211|consen 621 PKILKLLDES----------------VRDEEVLPLLETLSSDQELDVRYRAILAFG 660 (759)
T ss_pred HHHHhhcchH----------------HHHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 9987754332 233334566777777788777776665554
No 76
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.88 E-value=2.5e-07 Score=88.96 Aligned_cols=273 Identities=17% Similarity=0.226 Sum_probs=206.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHH
Q 043676 14 DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIF 93 (446)
Q Consensus 14 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 93 (446)
.....|+.|.+.-....+..+.++.+ +|..++.|-++- -|..|+..|+....-.+-....-..-|+.|.+
T Consensus 448 ~FFteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLSQv---HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYV 517 (1387)
T KOG1517|consen 448 PFFTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLSQV---HRLRALVLLARFLDLGPWAVDLALSVGIFPYV 517 (1387)
T ss_pred chHHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHHHH---HHHHHHHHHHHHhccchhhhhhhhccchHHHH
Confidence 34456777777777666655455433 777777777654 36678888988887667777777788999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcccc--chhHHHHHHHHHHHhhcCCCCCChhhh-
Q 043676 94 VKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA--KLSMLRNATRTLSNFCRGKPEPPFDQV- 170 (446)
Q Consensus 94 ~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~- 170 (446)
+++|+++-.++|..-+.+...|...++.|+..+++.++-..+++.+..+. +++-+..++.+|..++.+.+.......
T Consensus 518 LKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~ 597 (1387)
T KOG1517|consen 518 LKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLN 597 (1387)
T ss_pred HHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcc
Confidence 99999999999999999999998888889999999988888888884422 457788899999999998754444433
Q ss_pred hhhHHHHHHhhcCC-CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCC----
Q 043676 171 RPALPALAQLVHSN-DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGD---- 245 (446)
Q Consensus 171 ~~~~~~l~~ll~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~---- 245 (446)
.+.+......+.++ .+-++..++-||+.|..+.+...-.-.+.+..+.|+.+|.++-++||..|+.+|+.+....
T Consensus 598 ~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~f 677 (1387)
T KOG1517|consen 598 GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNF 677 (1387)
T ss_pred ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccccccc
Confidence 57777778888875 6889999999999999887755444556688999999999999999999999999998742
Q ss_pred chhhHHH------------HhcCCh---HHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043676 246 DFQTQCI------------INHGAV---PYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVID 297 (446)
Q Consensus 246 ~~~~~~~------------~~~~~~---~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 297 (446)
++..... ++..+. -.++..+++. .+-++.+.+-+++.+..+.........-
T Consensus 678 de~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~ 743 (1387)
T KOG1517|consen 678 DEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAG 743 (1387)
T ss_pred chhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhh
Confidence 2222111 122222 2566677778 8899999999999998776555544443
No 77
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.87 E-value=3e-07 Score=81.02 Aligned_cols=272 Identities=16% Similarity=0.165 Sum_probs=186.9
Q ss_pred HHHHHhcCCHHHHHHhhcCCCC-hHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHh
Q 043676 38 IEKVIQSGVVPRFVEFLMREDY-PQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNV 115 (446)
Q Consensus 38 ~~~~~~~~~~~~L~~ll~~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l 115 (446)
++.+...|++..|++++..++. ..++.+|.+.|-.+.. .++++.+...| +..++.+-+. ..++.....+.+|.++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 3455567899999999999883 2469999999999876 67888888777 5555555544 5688899999999999
Q ss_pred hCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC--CCCChhhhhhhHHHHHHhhcCCCHhHHHHHH
Q 043676 116 AGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK--PEPPFDQVRPALPALAQLVHSNDEDVLTYAC 193 (446)
Q Consensus 116 ~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~ 193 (446)
...+.+....++..|++..++-.. +..++.+.++++.+|.|++-+. .....+....+-..|..+-.+.|+-++.+++
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 988888888899999999988887 6678999999999999998876 2233344456667777777778899999999
Q ss_pred HHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHH
Q 043676 194 WSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEII 273 (446)
Q Consensus 194 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v 273 (446)
-+++.++.+.+ ....+.+.|.+...-.++.+-++.--.. --...+.+. ....++.|+.+|.+. ..+.
T Consensus 329 lAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~-R~EA 395 (832)
T KOG3678|consen 329 LAVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSN-RLEA 395 (832)
T ss_pred HHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcc-hhhh
Confidence 99999987755 3334666777766666666555432111 011111111 123567888888866 5444
Q ss_pred HHHHHHHHHHHhc-CCHHH-HHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHh
Q 043676 274 KKEISWIISNITA-GNREQ-IQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNA 326 (446)
Q Consensus 274 ~~~a~~~l~~l~~-~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 326 (446)
+.-+++-++.=+. .+... ...+.+-|.++.|-++..+.+.--.+.|-.+|.-+
T Consensus 396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 4443333332221 11122 23344678899999988876655455555555544
No 78
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=3.3e-06 Score=79.22 Aligned_cols=282 Identities=21% Similarity=0.243 Sum_probs=168.2
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChH
Q 043676 54 LMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALI 133 (446)
Q Consensus 54 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~ 133 (446)
..++. +-+|..|+.++-++-+-+++....+ ++.+-.+|.+.++.|.-.|+.++-.+|-+. -+.+ .+-..
T Consensus 152 ~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPer---ldLI--Hknyr 220 (968)
T KOG1060|consen 152 VTDPS-PYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPER---LDLI--HKNYR 220 (968)
T ss_pred hcCCc-HHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhH---HHHh--hHHHH
Confidence 33444 6666666666666665555555433 455556677777777777777777776322 1122 12345
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhhcCC-CCCC----------------------------hhhhhhhHHHHHHhhcCC
Q 043676 134 PLLAELNEHAKLSMLRNATRTLSNFCRGK-PEPP----------------------------FDQVRPALPALAQLVHSN 184 (446)
Q Consensus 134 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~----------------------------~~~~~~~~~~l~~ll~~~ 184 (446)
.+++++ .+-++-=+...+..|...++.. +... ..-..-+++..-.++.+.
T Consensus 221 klC~ll-~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~ 299 (968)
T KOG1060|consen 221 KLCRLL-PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR 299 (968)
T ss_pred HHHhhc-cchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC
Confidence 666666 3333333444555555555443 1110 011133445556677888
Q ss_pred CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHH
Q 043676 185 DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDM 264 (446)
Q Consensus 185 ~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~ 264 (446)
++.+.-.++.+++.++...+ .. .+++.|+.+|++ +..++...+..+..++...+.... |.+-.+
T Consensus 300 n~sVVmA~aql~y~lAP~~~--~~-----~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~--------P~lKsF 363 (968)
T KOG1060|consen 300 NPSVVMAVAQLFYHLAPKNQ--VT-----KIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFE--------PHLKSF 363 (968)
T ss_pred CcHHHHHHHhHHHhhCCHHH--HH-----HHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhh--------hhhhce
Confidence 99999999999999885432 22 556788888866 445777788888888775554333 333333
Q ss_pred hc-cCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCC
Q 043676 265 LV-HNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGC 343 (446)
Q Consensus 265 l~-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~ 343 (446)
.- +.....++..=+.+|++++... ++. .+++.+...+++.+..+...+..+|+.++.... . +...+
T Consensus 364 fv~ssDp~~vk~lKleiLs~La~es--ni~-----~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~-s-----v~~tC 430 (968)
T KOG1060|consen 364 FVRSSDPTQVKILKLEILSNLANES--NIS-----EILRELQTYIKSSDRSFAAAAVKAIGRCASRIG-S-----VTDTC 430 (968)
T ss_pred EeecCCHHHHHHHHHHHHHHHhhhc--cHH-----HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC-c-----hhhHH
Confidence 22 2214455555666777775421 111 245566677777766777778888887766421 1 22235
Q ss_pred hHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhh
Q 043676 344 VKPLCDLLLCSDPEIVTVCLIGLENILKVGEAE 376 (446)
Q Consensus 344 i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~ 376 (446)
+..|+.++++.+..+...+.-.|..+++..+..
T Consensus 431 L~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~ 463 (968)
T KOG1060|consen 431 LNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAE 463 (968)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhChHH
Confidence 777888888888888777777888877765554
No 79
>PF05536 Neurochondrin: Neurochondrin
Probab=98.84 E-value=9.8e-06 Score=76.87 Aligned_cols=194 Identities=20% Similarity=0.155 Sum_probs=134.4
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCc--HHHHHhcCCHHHHHHhhcCCC------ChHHHHHHHHHHHHHc
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPP--IEKVIQSGVVPRFVEFLMRED------YPQLQYEAAWVLINIA 74 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~~~~~~L~~ll~~~~------~~~~~~~a~~~L~~l~ 74 (446)
.+...+++|++.+..-++.++..+.+++..+.... .+.+.+.-+.+.+-++|+++. ....+..|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 35677889999888888999999999887642112 335777777889999998722 2577888889999999
Q ss_pred CCChhhHHHHHhcCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHH
Q 043676 75 SGTSENTNVVIDHGAVPIFVKLLSSPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATR 153 (446)
Q Consensus 75 ~~~~~~~~~~~~~~~i~~L~~~L~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~ 153 (446)
. .|+....---.+-||.|++.+.+.+. .+...|+.+|..++ ..+..+..+.+.|.++.++..+.+ .+...+.++.
T Consensus 86 ~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~ 161 (543)
T PF05536_consen 86 R-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIALN 161 (543)
T ss_pred C-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHHH
Confidence 8 55554222222568999999988666 99999999999999 666678899999999999999944 5566788888
Q ss_pred HHHHhhcCCCCCC----hhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhc
Q 043676 154 TLSNFCRGKPEPP----FDQVRPALPALAQLVHSNDEDVLTYACWSLSYLA 200 (446)
Q Consensus 154 ~L~~l~~~~~~~~----~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~ 200 (446)
++.+++....... ......+++.+...+.......+-.++..+..+.
T Consensus 162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L 212 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFL 212 (543)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhc
Confidence 8888776543211 1122233444444444333334444444444444
No 80
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=1e-06 Score=82.11 Aligned_cols=316 Identities=14% Similarity=0.092 Sum_probs=162.5
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChH
Q 043676 54 LMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALI 133 (446)
Q Consensus 54 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~ 133 (446)
|++|+ +-+|-..++.|+.+-. ++... ..+|.+...|++++.-||++|..++..+-.... .+. .++-.
T Consensus 108 LQHPN-EyiRG~TLRFLckLkE--~ELle-----pl~p~IracleHrhsYVRrNAilaifsIyk~~~----~L~-pDape 174 (948)
T KOG1058|consen 108 LQHPN-EYIRGSTLRFLCKLKE--PELLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE----HLI-PDAPE 174 (948)
T ss_pred ccCch-HhhcchhhhhhhhcCc--HHHhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhhhh----hhc-CChHH
Confidence 34555 5566666666665533 33222 346777888889999999999999988874321 111 11223
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc---CCCHhHHHHHHHHHHHhccCCcHHHHHH
Q 043676 134 PLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH---SNDEDVLTYACWSLSYLADGTNDKIQAV 210 (446)
Q Consensus 134 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~---~~~~~v~~~~~~~l~~l~~~~~~~~~~~ 210 (446)
.+-..|....|+..+++|.-.|...-.. ..+..+..... +-++.++.-....+...+..++....
T Consensus 175 Li~~fL~~e~DpsCkRNAFi~L~~~D~E----------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~-- 242 (948)
T KOG1058|consen 175 LIESFLLTEQDPSCKRNAFLMLFTTDPE----------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKA-- 242 (948)
T ss_pred HHHHHHHhccCchhHHHHHHHHHhcCHH----------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhh--
Confidence 3444555677888888887666543221 12222222222 22345555555555555554443332
Q ss_pred HHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHH------------------H---------------hcCC
Q 043676 211 IEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCI------------------I---------------NHGA 257 (446)
Q Consensus 211 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~------------------~---------------~~~~ 257 (446)
..+..+..+|.+.++.++..|+.++..++... ...+.. + -.++
T Consensus 243 ---~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p-~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l 318 (948)
T KOG1058|consen 243 ---RYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDP-TALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGL 318 (948)
T ss_pred ---HHHHHHHHHHhcCCchhhhhhcceEEEccCCH-HHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHH
Confidence 44555666666665555555555555544421 111110 0 0112
Q ss_pred hHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHH-HHhcC------CcchHHHHHHHHHHhccCC
Q 043676 258 VPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVN-LLQNA------EFDTKKEAAWAISNATSGG 330 (446)
Q Consensus 258 ~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~------~~~v~~~a~~aL~~l~~~~ 330 (446)
+--++.+|..+ +-++|..+......++.. .+... ++..|-+ +.+.. +...|+.-..++..++..
T Consensus 319 ~mDvLrvLss~-dldvr~Ktldi~ldLvss--rNved-----iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~- 389 (948)
T KOG1058|consen 319 IMDVLRVLSSP-DLDVRSKTLDIALDLVSS--RNVED-----IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVK- 389 (948)
T ss_pred HHHHHHHcCcc-cccHHHHHHHHHHhhhhh--ccHHH-----HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhc-
Confidence 22233334444 444555444444444321 01111 1111111 11111 123355555555555443
Q ss_pred CHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCC
Q 043676 331 TQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDN 410 (446)
Q Consensus 331 ~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~ 410 (446)
-++.. ..+++.|++.+.+.++.....++..+...++..++.+ ..+. -..++.+-.-.+
T Consensus 390 Fp~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr-------------~~ii----~~l~~~~~~irS 447 (948)
T KOG1058|consen 390 FPEVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR-------------ASII----EKLLETFPQIRS 447 (948)
T ss_pred ChHHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH-------------HHHH----HHHHHhhhhhcc
Confidence 22222 2368889999999999888888888888887766542 2221 112333333345
Q ss_pred HHHHHHHHHHHHHhcCCCC
Q 043676 411 NEIHEKSVKIFKTYWCGRN 429 (446)
Q Consensus 411 ~~v~~~a~~~l~~~~~~~~ 429 (446)
.++++-|.|++..|.++.+
T Consensus 448 ~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 448 SKICRGALWILGEYCEGLS 466 (948)
T ss_pred cccchhHHHHHHHHHhhhH
Confidence 5677778888887766554
No 81
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=6.2e-06 Score=77.48 Aligned_cols=367 Identities=14% Similarity=0.140 Sum_probs=227.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHH
Q 043676 5 PALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVV 84 (446)
Q Consensus 5 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 84 (446)
..|.++|.|.....+..|.+-+..+...+ .+ . +..+|..++...+.+ .+++...---|...+...++.. +
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G-~d-v-----S~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA--L 107 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKG-KD-V-----SLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA--L 107 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcC-Cc-H-----HHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce--e
Confidence 35788899988888888888777665543 22 1 246888899999999 8999988888888887544322 1
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC
Q 043676 85 IDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPE 164 (446)
Q Consensus 85 ~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 164 (446)
=-|..+-+-|+++++.+|..|++++..+=- +.... ++-.-++-...++.+-++..|+.++-.+-.-.+.
T Consensus 108 ---LSIntfQk~L~DpN~LiRasALRvlSsIRv--p~IaP------I~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e 176 (968)
T KOG1060|consen 108 ---LSINTFQKALKDPNQLIRASALRVLSSIRV--PMIAP------IMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE 176 (968)
T ss_pred ---eeHHHHHhhhcCCcHHHHHHHHHHHHhcch--hhHHH------HHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh
Confidence 237888999999999999999999886631 11111 1111122233677899999999999988766533
Q ss_pred CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcC
Q 043676 165 PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG 244 (446)
Q Consensus 165 ~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~ 244 (446)
. ...++..+-.+|.+.++.|.-.|+.++-.+|...-+... +-...+.+++.+-+.--+...+..|...+++
T Consensus 177 ~----k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIH-----knyrklC~ll~dvdeWgQvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 177 Q----KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIH-----KNYRKLCRLLPDVDEWGQVVLINMLTRYARH 247 (968)
T ss_pred h----HHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhh-----HHHHHHHhhccchhhhhHHHHHHHHHHHHHh
Confidence 2 235667777888999999999999999888854333222 4445666666664444444455555444432
Q ss_pred C---chhh---------------------HHHH-hc---CChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 043676 245 D---DFQT---------------------QCII-NH---GAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVI 296 (446)
Q Consensus 245 ~---~~~~---------------------~~~~-~~---~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 296 (446)
. +... .... +. -+++..-.++.+. ++.|...++.+...++-. ....
T Consensus 248 ~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~-n~sVVmA~aql~y~lAP~--~~~~--- 321 (968)
T KOG1060|consen 248 QLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR-NPSVVMAVAQLFYHLAPK--NQVT--- 321 (968)
T ss_pred cCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC-CcHHHHHHHhHHHhhCCH--HHHH---
Confidence 1 1000 0000 00 0123334455666 778888888888888532 2211
Q ss_pred HcCChHHHHHHHhcCCcchHHHHHHHHHHhccCC----------------CHHHHH--------HHHHcCC----hHHHH
Q 043676 297 DAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGG----------------TQEQIK--------HLVREGC----VKPLC 348 (446)
Q Consensus 297 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~----------------~~~~~~--------~l~~~~~----i~~L~ 348 (446)
.+++.|+++|.+ +..+|...+..+..++... ++.+.+ .+...+- ++.+.
T Consensus 322 --~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q 398 (968)
T KOG1060|consen 322 --KIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQ 398 (968)
T ss_pred --HHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Confidence 467788887775 4666666777776665431 222221 1222222 23333
Q ss_pred hcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 043676 349 DLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGR 428 (446)
Q Consensus 349 ~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 428 (446)
..+++.+.++...+..+|..+....... ...++.-|..++.+.++.|...|...|.++...+
T Consensus 399 ~YI~s~d~~faa~aV~AiGrCA~~~~sv------------------~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~ 460 (968)
T KOG1060|consen 399 TYIKSSDRSFAAAAVKAIGRCASRIGSV------------------TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKD 460 (968)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHhhCch------------------hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhC
Confidence 4445666667777777777765543222 2233555666777777777777777777776543
No 82
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=7.6e-06 Score=79.31 Aligned_cols=303 Identities=14% Similarity=0.223 Sum_probs=204.0
Q ss_pred CCChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChh
Q 043676 1 LGSFPALVAGVWS-DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSE 79 (446)
Q Consensus 1 ~~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 79 (446)
+|.++.+.-.+.+ .++.++..++..+..+... .+....+...+.+..|+.+|.+. |..|..++.+|..+++ +++
T Consensus 1770 ig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S-~~~ 1844 (2235)
T KOG1789|consen 1770 IGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSS-NGQ 1844 (2235)
T ss_pred hcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhc-CcH
Confidence 4667778887775 6789999999998876664 78888999999999999999876 4889999999999998 778
Q ss_pred hHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC---hHHHHHHHH----------cCChHHHHHHhccc-cc
Q 043676 80 NTNVVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAGDS---PRCRDLVLS----------QGALIPLLAELNEH-AK 144 (446)
Q Consensus 80 ~~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~---~~~~~~~~~----------~~~i~~l~~~l~~~-~~ 144 (446)
....-.+.|++..+..++-. .++..|.+++..++.+..+. |..+-.+++ .+.-+..+..+... .+
T Consensus 1845 i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~En 1924 (2235)
T KOG1789|consen 1845 IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSEN 1924 (2235)
T ss_pred HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCC
Confidence 77788888888888876654 67889999999999988432 222111111 01113334444211 12
Q ss_pred h------hHHHHHHHHHHHhhcC----C---CC--------------------------------------CChhhhhhh
Q 043676 145 L------SMLRNATRTLSNFCRG----K---PE--------------------------------------PPFDQVRPA 173 (446)
Q Consensus 145 ~------~~~~~a~~~L~~l~~~----~---~~--------------------------------------~~~~~~~~~ 173 (446)
+ ..+......+..+..+ . +. .......+.
T Consensus 1925 PELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~L 2004 (2235)
T KOG1789|consen 1925 PELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTEL 2004 (2235)
T ss_pred cccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHH
Confidence 2 2222333333322211 0 00 011223455
Q ss_pred HHHHHHhhcCCC--HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHH
Q 043676 174 LPALAQLVHSND--EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQC 251 (446)
Q Consensus 174 ~~~l~~ll~~~~--~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 251 (446)
+..+.+++..++ .......-.++..+....+.....+-..|.+|.++..+...+..+-..|++.|..|+. +....+.
T Consensus 2005 Lek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lse-n~~C~~A 2083 (2235)
T KOG1789|consen 2005 LEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSE-NQFCCDA 2083 (2235)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhh-ccHHHHH
Confidence 555666666443 2333334444555555666666666667999999999999888888999999999997 4456666
Q ss_pred HHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcC
Q 043676 252 IINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAVIDAGLIRPIVNLLQNA 311 (446)
Q Consensus 252 ~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~ 311 (446)
+.....+..++..++.. .....-|+.+|..+.. ...+......+.|++|.|+.+++..
T Consensus 2084 MA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2084 MAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 66667777788888765 3444577888888765 3445556667889999999999754
No 83
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=5.2e-07 Score=86.93 Aligned_cols=246 Identities=16% Similarity=0.215 Sum_probs=189.9
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
.+|..++-|-|. --|+.|+..|..++... .........-|+.|..+++|+++. .++|..-+-+-.++..-++.+..
T Consensus 473 QLPiVLQVLLSQ--vHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~ 548 (1387)
T KOG1517|consen 473 QLPIVLQVLLSQ--VHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQA 548 (1387)
T ss_pred hcchHHHHHHHH--HHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHH
Confidence 456666666554 33667888888877765 566777778899999999999999 89999999999998887888988
Q ss_pred HHHhcCChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 043676 83 VVIDHGAVPIFVKLLSS---PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFC 159 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 159 (446)
.+++.++-..+++.|.+ -+++-|..|+.+|..++.+-+..+....+.+.+...+..+..++.+-++.-++-+|+.|-
T Consensus 549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW 628 (1387)
T KOG1517|consen 549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW 628 (1387)
T ss_pred HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence 99988888999998877 246889999999999998888788888888889888888854456788899999999999
Q ss_pred cCCCCCChh-hhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC----cHHHHHH------------HHhCcH----HH
Q 043676 160 RGKPEPPFD-QVRPALPALAQLVHSNDEDVLTYACWSLSYLADGT----NDKIQAV------------IEAGVC----PR 218 (446)
Q Consensus 160 ~~~~~~~~~-~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~----~~~~~~~------------~~~~~~----~~ 218 (446)
.+.+..+.. ...+....|..+|.++-++||..++.+|+.+..+. ++..... .+ ..+ ..
T Consensus 629 ~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E-~~i~~~~~~ 707 (1387)
T KOG1517|consen 629 EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIE-DLIIKGLMS 707 (1387)
T ss_pred hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHH-HHHHhhHHH
Confidence 887444443 44688899999999999999999999999998752 2222211 11 222 25
Q ss_pred HHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH
Q 043676 219 LVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCII 253 (446)
Q Consensus 219 l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 253 (446)
++.+++..++-++.+..-++..+..+.......+.
T Consensus 708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va 742 (1387)
T KOG1517|consen 708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVA 742 (1387)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence 66667777888888888888887776655544333
No 84
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.74 E-value=9.2e-06 Score=73.01 Aligned_cols=334 Identities=15% Similarity=0.080 Sum_probs=204.5
Q ss_pred HHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccc-cchhHH
Q 043676 70 LINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEH-AKLSML 148 (446)
Q Consensus 70 L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~ 148 (446)
|..+....++.+..+.-....+.+..++-+++.++|..+.+++..+..+... -..+.+.+.-..++.-|..+ .+..-+
T Consensus 7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER 85 (371)
T PF14664_consen 7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVER 85 (371)
T ss_pred HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHH
Confidence 3333444454444444333455555455455599999999999999866554 45566666555555566443 344557
Q ss_pred HHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCc
Q 043676 149 RNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSP 228 (446)
Q Consensus 149 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 228 (446)
++|+..+..+..... .......+++..++.+..+.++..+..++.+++.++-.+|+ .+..+|++..+.+.+.++..
T Consensus 86 ~QALkliR~~l~~~~-~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~ 161 (371)
T PF14664_consen 86 EQALKLIRAFLEIKK-GPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSF 161 (371)
T ss_pred HHHHHHHHHHHHhcC-CcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccH
Confidence 789999888877642 22234578899999999999999999999999999988774 46788999999999988666
Q ss_pred cchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccC------chH--HHHHHHHHHHHHHhcCCHHHHHHHHH-cC
Q 043676 229 SVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHN------HEE--IIKKEISWIISNITAGNREQIQAVID-AG 299 (446)
Q Consensus 229 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~~--~v~~~a~~~l~~l~~~~~~~~~~~~~-~~ 299 (446)
++....+.++..+.. .|..++.+...--++.++.-+.+. .+. +.-..+..++..+...=+.......+ ..
T Consensus 162 ~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~ 240 (371)
T PF14664_consen 162 SISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFR 240 (371)
T ss_pred hHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCch
Confidence 677788888888877 444555444333344444443322 022 23344555555554421211111112 14
Q ss_pred ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHH------HcCCh---HHHHhcccCCC---HHHHHHHHHHHH
Q 043676 300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLV------REGCV---KPLCDLLLCSD---PEIVTVCLIGLE 367 (446)
Q Consensus 300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~------~~~~i---~~L~~ll~~~~---~~~~~~~~~~l~ 367 (446)
.+..|+..+..+++++|+..+..+..+..-..+.....+. ..+-+ ..+..-..... |.....-...+.
T Consensus 241 ~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~ 320 (371)
T PF14664_consen 241 GLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVN 320 (371)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHH
Confidence 7888999999999999999999999987643332211111 11111 00100000000 000000111111
Q ss_pred HHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCC-CHHHHHHHHHHHHHhc
Q 043676 368 NILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHD-NNEIHEKSVKIFKTYW 425 (446)
Q Consensus 368 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~ 425 (446)
+.... ....|.++|.++.|.++.... ++.+..+|.-+|..++
T Consensus 321 ~y~aL----------------ll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 321 HYLAL----------------LLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHHHH----------------HHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 11111 356788999999999997766 8889999998888765
No 85
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=1.6e-07 Score=83.94 Aligned_cols=307 Identities=14% Similarity=0.105 Sum_probs=195.2
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCC
Q 043676 106 EQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHSN 184 (446)
Q Consensus 106 ~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~ 184 (446)
..++.+|..++..-...|.-+.+..+.+.|++.| +.++.-+...+...++|+.-.. +........+++..++.++.+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 3445556666655556677777888899999999 6666666667777777776554 5556666789999999999999
Q ss_pred CHhHHHHHHHHHHHhccCCcHHHH-HHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCch---hhHHHHh----cC
Q 043676 185 DEDVLTYACWSLSYLADGTNDKIQ-AVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDF---QTQCIIN----HG 256 (446)
Q Consensus 185 ~~~v~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~---~~~~~~~----~~ 256 (446)
|..++....|.+.++..+.+...+ .+...-.+..++.+..++...++..++.++.|++..... ..+.+++ .-
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 999999999999999977654422 355557789999999999999999999999999874332 1221111 12
Q ss_pred ChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHH-HcCChHHHHHHHhcC--C---------cchHHHHHHHHH
Q 043676 257 AVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVI-DAGLIRPIVNLLQNA--E---------FDTKKEAAWAIS 324 (446)
Q Consensus 257 ~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~--~---------~~v~~~a~~aL~ 324 (446)
+...+++.+... ++-.-...++.|.++++.+......+. +..++..+...+... + ..+-..-.....
T Consensus 566 lfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v 644 (743)
T COG5369 566 LFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIV 644 (743)
T ss_pred HHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeee
Confidence 455677777766 665666678889888776555444444 344555555544321 1 111111111222
Q ss_pred HhccCCCHHHHHHHHHcCCh--HHHHhc---ccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChH
Q 043676 325 NATSGGTQEQIKHLVREGCV--KPLCDL---LLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGL 399 (446)
Q Consensus 325 ~l~~~~~~~~~~~l~~~~~i--~~L~~l---l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 399 (446)
++....+ ... .+.. |.+-.+ -.+++.++.....|.+.++.-...... . -.......+.+.+.|.-
T Consensus 645 ~l~e~~d--~f~----r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~-v---tratveR~~iL~~~G~~ 714 (743)
T COG5369 645 NLSENSD--KFK----RLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSE-V---TRATVERIQILCANGIR 714 (743)
T ss_pred ccccccc--ccc----cceecCCCccccccccCCCchhhhhccceEEEecccCccCCc-c---chhhHHHHHHHHHccHH
Confidence 2222110 000 0111 222111 122455677777787777432211111 0 01222346888888888
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHh
Q 043676 400 EKIENLQSHDNNEIHEKSVKIFKTY 424 (446)
Q Consensus 400 ~~l~~l~~~~~~~v~~~a~~~l~~~ 424 (446)
+-+..++.++++.+++++..++.++
T Consensus 715 e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 715 EWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhh
Confidence 8899999999999999999888754
No 86
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=8.1e-06 Score=68.37 Aligned_cols=273 Identities=13% Similarity=0.176 Sum_probs=173.1
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV 83 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 83 (446)
+..+++++++.+|.++..|...+..+.... -..-.-.+...++.+.+++.... + ...|+.++.|++. ++..+..
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~--~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l~~~ 78 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGRG--LQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEELRKK 78 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhccccc--hhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHHHHH
Confidence 346788999999999999998888765541 11111112346788889988877 4 7789999999998 7888888
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHc-----CChHHHHHHhcc-ccch-hHHHHHHHHHH
Q 043676 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQ-----GALIPLLAELNE-HAKL-SMLRNATRTLS 156 (446)
Q Consensus 84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-----~~i~~l~~~l~~-~~~~-~~~~~a~~~L~ 156 (446)
+++. .+..++.++.++...+....+.+++|++.....+....... .++..++....+ +.+. .-..+.+..+.
T Consensus 79 ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 79 LLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred HHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 8876 78888888888888888899999999998877665554332 233344443322 2221 23456677788
Q ss_pred HhhcCCCCCChhhhhhhH--HHHHHhhcCCCHhHH-HHHHHHHHHhccCCcHHHHHHHHh--CcHHHHH-----------
Q 043676 157 NFCRGKPEPPFDQVRPAL--PALAQLVHSNDEDVL-TYACWSLSYLADGTNDKIQAVIEA--GVCPRLV----------- 220 (446)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~--~~l~~ll~~~~~~v~-~~~~~~l~~l~~~~~~~~~~~~~~--~~~~~l~----------- 220 (446)
++++....+........+ +.+..+-. .+..+| ...+.+|.|.|........ +... .+++.++
T Consensus 158 nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee~sE 235 (353)
T KOG2973|consen 158 NLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEELSE 235 (353)
T ss_pred HHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCccccCH
Confidence 888776444443333222 23333333 444444 4467777777755442222 2221 2222222
Q ss_pred ----------HhcC-----CCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHh
Q 043676 221 ----------ELLG-----HPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNIT 285 (446)
Q Consensus 221 ----------~ll~-----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~ 285 (446)
+++. .+++.+|..-+.+|..|+. ....++.+...|+.+.+-.+=+...+++++..+-.....+.
T Consensus 236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv 314 (353)
T KOG2973|consen 236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLV 314 (353)
T ss_pred HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 2222 1456789999999999987 44566677777777776666655546677665555555454
Q ss_pred c
Q 043676 286 A 286 (446)
Q Consensus 286 ~ 286 (446)
.
T Consensus 315 ~ 315 (353)
T KOG2973|consen 315 R 315 (353)
T ss_pred h
Confidence 4
No 87
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.72 E-value=5.8e-06 Score=75.14 Aligned_cols=240 Identities=16% Similarity=0.042 Sum_probs=152.6
Q ss_pred hHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 4 FPALVAGVW-SDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 4 i~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
++.++..|. .+++.+...++..+. ... .. ..+..|+..+.+++ +.++..++.+|+.+-.
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~---~~~-~~--------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~------- 115 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALL---AQE-DA--------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGG------- 115 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHh---ccC-Ch--------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCc-------
Confidence 455666664 455666555544442 111 11 12677778887777 6788888888876544
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK 162 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 162 (446)
....+.|..+|++.++.++..++.+++..-. ...+.+...+ ++.++.++..++.+|..+-..
T Consensus 116 ----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~- 177 (410)
T TIGR02270 116 ----RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPRR- 177 (410)
T ss_pred ----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc-
Confidence 2346777788888888888777766665221 1234666677 577888888888888877543
Q ss_pred CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhh
Q 043676 163 PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV 242 (446)
Q Consensus 163 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~ 242 (446)
...+.|...+.+.++.|+..++.++..+.. + .....+..+...........+..++...
T Consensus 178 ---------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~g~~~~~~l~~~lal~- 236 (410)
T TIGR02270 178 ---------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLEGGPHRQRLLVLLAVA- 236 (410)
T ss_pred ---------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhccCccHHHHHHHHHHhC-
Confidence 245667777778888888888888766532 1 1223344433333333333333333322
Q ss_pred cCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHH
Q 043676 243 TGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWA 322 (446)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 322 (446)
..+ ..++.|..+++++ .++..++++++.+ +++ ..++.|+..+.+ +.++..|..+
T Consensus 237 -~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~l--g~p---------~av~~L~~~l~d--~~~aR~A~eA 290 (410)
T TIGR02270 237 -GGP---------DAQAWLRELLQAA---ATRREALRAVGLV--GDV---------EAAPWCLEAMRE--PPWARLAGEA 290 (410)
T ss_pred -Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHc--CCc---------chHHHHHHHhcC--cHHHHHHHHH
Confidence 111 3567788888776 4899999999987 333 367888888864 4499999999
Q ss_pred HHHhcc
Q 043676 323 ISNATS 328 (446)
Q Consensus 323 L~~l~~ 328 (446)
+..++-
T Consensus 291 ~~~ItG 296 (410)
T TIGR02270 291 FSLITG 296 (410)
T ss_pred HHHhhC
Confidence 999975
No 88
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=8.9e-06 Score=75.50 Aligned_cols=301 Identities=11% Similarity=0.117 Sum_probs=188.4
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHcCCChhhHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRED-YPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
+..+.+.|.|.|+.....|+.++.++.+. +....+.. + ++ ++|.+++ .+-++..|+.||..+...+|+...
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG~r---e~~ea~~~-D-I~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~~ 184 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIGSR---EMAEAFAD-D-IP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN 184 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhccH---hHHHHhhh-h-hH---HHHhCCcchHHHHHHHHHHHHHHHhcCccccC
Confidence 44566778888999999999999987654 22322222 2 33 5555554 246889999999999886655322
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc------------cccchhHHHH
Q 043676 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN------------EHAKLSMLRN 150 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~------------~~~~~~~~~~ 150 (446)
..+....++.+|.+.+-.+...+...+..++...|+....... -++..+.+... .-+.|-++..
T Consensus 185 ---~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 185 ---PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred ---hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 2356788999999988888888888888888666543221110 01222222221 1134567777
Q ss_pred HHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC--C-----HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc
Q 043676 151 ATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSN--D-----EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELL 223 (446)
Q Consensus 151 a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~--~-----~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll 223 (446)
+++.|.++-...+........+++..+....+.. . ......++.-..+++.+-+..-+.+. ..+..|-+++
T Consensus 261 l~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fl 338 (938)
T KOG1077|consen 261 LLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFL 338 (938)
T ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHh
Confidence 8888777722222222333344444444444421 1 22333344444444433332332222 5678899999
Q ss_pred CCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 043676 224 GHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRP 303 (446)
Q Consensus 224 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~ 303 (446)
.+.+..+|.-|+..++.|+...+ ..+ .++.. .+.++..|+...+..+|..|+..|..+|.. ++.. .++..
T Consensus 339 s~rE~NiRYLaLEsm~~L~ss~~-s~d-avK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak-----~IV~e 408 (938)
T KOG1077|consen 339 SHRETNIRYLALESMCKLASSEF-SID-AVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAK-----QIVAE 408 (938)
T ss_pred hcccccchhhhHHHHHHHHhccc-hHH-HHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhch--hhHH-----HHHHH
Confidence 99999999999999999998633 233 33333 788899999655999999999999999753 2222 25666
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhcc
Q 043676 304 IVNLLQNAEFDTKKEAAWAISNATS 328 (446)
Q Consensus 304 L~~ll~~~~~~v~~~a~~aL~~l~~ 328 (446)
|++.+.+.++.+|+...-=+.-++.
T Consensus 409 lLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 409 LLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHH
Confidence 7777877888888776655555554
No 89
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.68 E-value=1.8e-05 Score=76.03 Aligned_cols=284 Identities=13% Similarity=0.123 Sum_probs=184.9
Q ss_pred ChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHH
Q 043676 59 YPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAE 138 (446)
Q Consensus 59 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~ 138 (446)
+..++.-|.-.|+.+..+.+.. -..+.-..+++.+++++++++..|..+|++++.++-+. .+|-++..
T Consensus 832 ~~~ikvfa~LslGElgr~~~~s----~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~--------yLpfil~q 899 (1233)
T KOG1824|consen 832 SDSIKVFALLSLGELGRRKDLS----PQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPK--------YLPFILEQ 899 (1233)
T ss_pred chhHHHHHHhhhhhhccCCCCC----cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHh--------HHHHHHHH
Confidence 3688888999999988733221 12244568889999999999999999999999755321 35666666
Q ss_pred hccccchhHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHH
Q 043676 139 LNEHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCP 217 (446)
Q Consensus 139 l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 217 (446)
+.. ++.=+.-.+..|....... ...-......+...|..-.....+..|.-+..||+.++..+++ .++|
T Consensus 900 i~s--qpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epe--------sLlp 969 (1233)
T KOG1824|consen 900 IES--QPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPE--------SLLP 969 (1233)
T ss_pred Hhc--chHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChH--------HHHH
Confidence 622 2333333344444333322 1111222344455555555666778899999999999988775 4568
Q ss_pred HHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043676 218 RLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVID 297 (446)
Q Consensus 218 ~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 297 (446)
.|-..+.++.+..|..++.++.......+.-.+..++ ..+..++..++++ +.+||..|+.++...+...+..++.
T Consensus 970 kL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dp-Dl~VrrvaLvv~nSaahNKpslIrD--- 1044 (1233)
T KOG1824|consen 970 KLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDP-DLEVRRVALVVLNSAAHNKPSLIRD--- 1044 (1233)
T ss_pred HHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCC-chhHHHHHHHHHHHHHccCHhHHHH---
Confidence 8999999999999999888887776666655554443 4677888999999 9999999999999887666665553
Q ss_pred cCChHHHHHHHhc----------------------CCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCC
Q 043676 298 AGLIRPIVNLLQN----------------------AEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSD 355 (446)
Q Consensus 298 ~~~i~~L~~ll~~----------------------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 355 (446)
++|.|+..+-+ ..-++|+.|..++..+...+- ....+.+ ++..+..=|++ .
T Consensus 1045 --llpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscl--d~~dit~--Fl~~~~~GL~D-h 1117 (1233)
T KOG1824|consen 1045 --LLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCL--DRLDITE--FLNHVEDGLED-H 1117 (1233)
T ss_pred --HHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhh--hhccHHH--HHHHHHhhcch-h
Confidence 34444433322 123678888888888866421 1111111 12222222333 3
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 043676 356 PEIVTVCLIGLENILKVGEAE 376 (446)
Q Consensus 356 ~~~~~~~~~~l~~l~~~~~~~ 376 (446)
.+++..+.-.+.++...++..
T Consensus 1118 ydiKmlt~l~l~rLa~lcPs~ 1138 (1233)
T KOG1824|consen 1118 YDIKMLTFLMLARLADLCPSA 1138 (1233)
T ss_pred hHHHHHHHHHHHHHHhhCcHH
Confidence 677777778888888777664
No 90
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.67 E-value=9.5e-05 Score=68.61 Aligned_cols=350 Identities=14% Similarity=0.100 Sum_probs=206.8
Q ss_pred hHHHHHhhcCCCH---HHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676 4 FPALVAGVWSDDN---SLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN 80 (446)
Q Consensus 4 i~~l~~~l~s~~~---~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 80 (446)
+|.++..|.+.+. ......+.+|..++.. .+-.+.+.. .++..+....+...+.+....++.++..+.....+.
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~--~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~ 77 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTS--PQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQED 77 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCC--hhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccc
Confidence 5788999987654 5677888889888775 232333222 555666555554444677778888888877533222
Q ss_pred -----HHHHHhcCChHHHHHhhCC-----C--CHHHHHHHHHHHHHhhCCChH-HHHHHHHcCChHHHHHHhc-------
Q 043676 81 -----TNVVIDHGAVPIFVKLLSS-----P--SDDVREQAVWALGNVAGDSPR-CRDLVLSQGALIPLLAELN------- 140 (446)
Q Consensus 81 -----~~~~~~~~~i~~L~~~L~~-----~--~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~i~~l~~~l~------- 140 (446)
.....+..+++.+.++.-. . ++.+...+..++..++..-+. .++.+ +..+..++.
T Consensus 78 ~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~-----~~~~~~lf~~~~~~~~ 152 (415)
T PF12460_consen 78 KQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI-----LDELYSLFLSPKSFSP 152 (415)
T ss_pred cccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHHccccccCC
Confidence 2333344467777765532 1 256666666666666644433 22222 334444332
Q ss_pred ----cccchhHHHHHHHHHHH-hhcCCCCCChhhhhhhHHHHHHhhcC-CCHhHHHHHHHHHHHhccCC--cHHHHHHHH
Q 043676 141 ----EHAKLSMLRNATRTLSN-FCRGKPEPPFDQVRPALPALAQLVHS-NDEDVLTYACWSLSYLADGT--NDKIQAVIE 212 (446)
Q Consensus 141 ----~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~~~~~l~~l~~~~--~~~~~~~~~ 212 (446)
..............+.. ++.-++..........+..++.+..+ +++..+..++.+++.++... ++...
T Consensus 153 ~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~---- 228 (415)
T PF12460_consen 153 FQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD---- 228 (415)
T ss_pred CCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH----
Confidence 00000112222222222 22222333333445577777777654 46888999999999888652 22222
Q ss_pred hCcHHHHHHhc-CCCCccchhHHHHHHHHhh----cCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC
Q 043676 213 AGVCPRLVELL-GHPSPSVLTPALRTVGNIV----TGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG 287 (446)
Q Consensus 213 ~~~~~~l~~ll-~~~~~~~~~~a~~~l~~l~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~ 287 (446)
+++..+.... ...+...+..++.++..++ ........ .++..++.++.++ .+...++..+.-+...
T Consensus 229 -~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~~---~~g~~aA~~f~il~~d 299 (415)
T PF12460_consen 229 -EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSSP---ELGQQAAKAFGILLSD 299 (415)
T ss_pred -HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCCh---hhHHHHHHHHhhHhcC
Confidence 3344444444 3344455555555554443 22222222 2567788888764 6778888888888764
Q ss_pred CH--------HHHHHHHHc----CChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCC
Q 043676 288 NR--------EQIQAVIDA----GLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSD 355 (446)
Q Consensus 288 ~~--------~~~~~~~~~----~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 355 (446)
.+ ..++.+.+. .++|.|++..+..+...|...+.||.++..+........ .-...+|.|++.|+.++
T Consensus 300 ~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~-~l~~LlPLLlqsL~~~~ 378 (415)
T PF12460_consen 300 SDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP-ELPTLLPLLLQSLSLPD 378 (415)
T ss_pred cHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHHHhCCCC
Confidence 22 233334433 357778777777777799999999999998755443322 12347999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 043676 356 PEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 356 ~~~~~~~~~~l~~l~~~~~~ 375 (446)
++++..++.+|..++...+.
T Consensus 379 ~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 379 ADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred HHHHHHHHHHHHHHHHcCHH
Confidence 99999999999998876533
No 91
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.67 E-value=4.5e-07 Score=65.81 Aligned_cols=153 Identities=7% Similarity=-0.002 Sum_probs=123.0
Q ss_pred ChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHH
Q 043676 257 AVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIK 336 (446)
Q Consensus 257 ~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 336 (446)
.++.++.-.....+.+.++....-|+|++. +|.+...+.+.+++..+++.+..++..++..++.+|+|++. ++.+.+
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~~ 93 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNAK 93 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHHH
Confidence 456667666655578889999999999965 47777889999999999999999999999999999999998 688999
Q ss_pred HHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHH
Q 043676 337 HLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEK 416 (446)
Q Consensus 337 ~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~ 416 (446)
.+.+.++++.++..++++...+...++.++..+..-+.. .+..+-....++.+++...+.+-+.+..
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt-------------~r~ell~p~Vv~~v~r~~~s~s~~~rnL 160 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT-------------ERDELLSPAVVRTVQRWRESKSHDERNL 160 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc-------------hhHHhccHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999999999999888887765432222 3566666667777777776666666777
Q ss_pred HHHHHHHhc
Q 043676 417 SVKIFKTYW 425 (446)
Q Consensus 417 a~~~l~~~~ 425 (446)
|...++.+-
T Consensus 161 a~~fl~~~~ 169 (173)
T KOG4646|consen 161 ASAFLDKHV 169 (173)
T ss_pred HHHHHHhhc
Confidence 777776653
No 92
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=2.9e-07 Score=82.39 Aligned_cols=285 Identities=15% Similarity=0.190 Sum_probs=187.6
Q ss_pred HHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC
Q 043676 39 EKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGD 118 (446)
Q Consensus 39 ~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~ 118 (446)
..+.+..+.+.|+++|..|+ ..+..-+...++|..-.-...+..+.+.|++..++.++.+.+..++....|++.++..+
T Consensus 425 TgL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyn 503 (743)
T COG5369 425 TGLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYN 503 (743)
T ss_pred hhccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhc
Confidence 34556778999999999988 68888888999999887778889999999999999999999999999999999999966
Q ss_pred ChHH-HHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC-C---Chh----hhhhhHHHHHHhhcCCCHhHH
Q 043676 119 SPRC-RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPE-P---PFD----QVRPALPALAQLVHSNDEDVL 189 (446)
Q Consensus 119 ~~~~-~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~---~~~----~~~~~~~~l~~ll~~~~~~v~ 189 (446)
..+. +-......++..++.+. .++...++.+++..|.|+..+... . +.. -..-....+...++..+|-..
T Consensus 504 cq~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i 582 (743)
T COG5369 504 CQKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEI 582 (743)
T ss_pred CcchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhh
Confidence 5432 33455666788999888 788899999999999999885522 1 111 112356677777887777777
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhcCC---------C--CccchhHHHHHHHHhhcCCchhhHHHHhcCC
Q 043676 190 TYACWSLSYLADGTNDKIQAVIEA-GVCPRLVELLGH---------P--SPSVLTPALRTVGNIVTGDDFQTQCIINHGA 257 (446)
Q Consensus 190 ~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~---------~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~ 257 (446)
...+..+.+++..++.....+.+. ..+..+..++.. + +..+...-....-++....+..........-
T Consensus 583 ~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p~ 662 (743)
T COG5369 583 LEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTPH 662 (743)
T ss_pred hhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecCCC
Confidence 777888888876666555544433 444444444322 1 1112122222222333222211111110001
Q ss_pred hHHHHHHhccCchHHHHHHHHHHHHHHhc---C------CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHh
Q 043676 258 VPYLLDMLVHNHEEIIKKEISWIISNITA---G------NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNA 326 (446)
Q Consensus 258 ~~~l~~~l~~~~~~~v~~~a~~~l~~l~~---~------~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 326 (446)
.+..-+--..+ +.+.-.+..|.+.|+.- + +.+.++.+.+.|+-+.+..+..+.++.+++.+-.+|.++
T Consensus 663 ~D~~~~d~~~~-NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 663 LDNMKKDSTTR-NDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred ccccccccCCC-chhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 11010001112 45566777888877642 1 235566677777777777777777889999999999876
No 93
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.2e-05 Score=68.04 Aligned_cols=318 Identities=14% Similarity=0.146 Sum_probs=203.8
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHH--HHhhcCCCChHHHHHHHHHHHHHcCCChh
Q 043676 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRF--VEFLMREDYPQLQYEAAWVLINIASGTSE 79 (446)
Q Consensus 2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L--~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 79 (446)
+.++.++.++..+|.++-..|.+.+..++.. +.....+..+.....+ ..+-...+ +-.|......+..+.+-+++
T Consensus 128 eilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSpe 204 (524)
T KOG4413|consen 128 EILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPE 204 (524)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHH
Confidence 4567888889999999999999999988876 4555566666555443 23333334 56788888899999998999
Q ss_pred hHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccc-cchhHHHHHHHHHHH
Q 043676 80 NTNVVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEH-AKLSMLRNATRTLSN 157 (446)
Q Consensus 80 ~~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~ 157 (446)
........|.++.|..-|+. .+.-++.+++.....++.... .++.+.+.|.+..+.+++... .++--.-.++.....
T Consensus 205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteH-greflaQeglIdlicnIIsGadsdPfekfralmgfgk 283 (524)
T KOG4413|consen 205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH-GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGK 283 (524)
T ss_pred HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHH
Confidence 99999999999999988876 777888899999999985433 467888889999999888422 233333334444444
Q ss_pred hhcCCC------CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCc--HHHHHH-hcCCCCc
Q 043676 158 FCRGKP------EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGV--CPRLVE-LLGHPSP 228 (446)
Q Consensus 158 l~~~~~------~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~--~~~l~~-ll~~~~~ 228 (446)
+..... ........-++.....++..+|+..+..++.+++.+..+... .+.+.+.|- ...++. ....+..
T Consensus 284 ffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteG-adlllkTgppaaehllarafdqnah 362 (524)
T KOG4413|consen 284 FFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEG-ADLLLKTGPPAAEHLLARAFDQNAH 362 (524)
T ss_pred HhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcch-hHHHhccCChHHHHHHHHHhccccc
Confidence 443321 111111233445556777889999999999999999877554 334555442 233333 3333334
Q ss_pred cchhHHHHHHHHhhcCC---chh----------hHHHHh-------cCChHHHHHHhccCchHHHHHHHHHHHHHHhcCC
Q 043676 229 SVLTPALRTVGNIVTGD---DFQ----------TQCIIN-------HGAVPYLLDMLVHNHEEIIKKEISWIISNITAGN 288 (446)
Q Consensus 229 ~~~~~a~~~l~~l~~~~---~~~----------~~~~~~-------~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~ 288 (446)
.-+..++.++.+++... +++ +..+.+ ..-...+..+++.+ .++++-.+..++..++...
T Consensus 363 akqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaqP 441 (524)
T KOG4413|consen 363 AKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQP 441 (524)
T ss_pred chHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcCc
Confidence 45667888888887431 111 111111 12344567778877 8899999999999997653
Q ss_pred HHHHHHHHHcCChHHHHHHHhcC---CcchHHHHHHHHHH
Q 043676 289 REQIQAVIDAGLIRPIVNLLQNA---EFDTKKEAAWAISN 325 (446)
Q Consensus 289 ~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~ 325 (446)
=.....+.+.+++..+.+--... ..+.+.+++.++.+
T Consensus 442 WalkeifakeefieiVtDastEhaKaakdAkYeccKAiae 481 (524)
T KOG4413|consen 442 WALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAE 481 (524)
T ss_pred HHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHH
Confidence 33333333556666554432221 12344455555543
No 94
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=4.2e-05 Score=64.24 Aligned_cols=270 Identities=13% Similarity=0.140 Sum_probs=173.6
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh-hhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHH
Q 043676 133 IPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQ-VRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVI 211 (446)
Q Consensus 133 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~ 211 (446)
..++.++ .+.++.++..|..-+..++... ...... ....++.+.+++...++ .+.+..++.|++.... ....++
T Consensus 6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~~-~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~~ll 80 (353)
T KOG2973|consen 6 VELVELL-HSLSPPVRKAAVEHLLGLTGRG-LQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRKKLL 80 (353)
T ss_pred HHHHHHh-ccCChHHHHHHHHHHhhccccc-hhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHHHHH
Confidence 3566777 7889999999999998888772 222222 24567788888887776 7788999999998654 333455
Q ss_pred HhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH--h----cCChHHHHHHhccCchH-HHHHHHHHHHHHH
Q 043676 212 EAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCII--N----HGAVPYLLDMLVHNHEE-IIKKEISWIISNI 284 (446)
Q Consensus 212 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~----~~~~~~l~~~l~~~~~~-~v~~~a~~~l~~l 284 (446)
+. ++..++..+.++.+......+..+.|++........... . .+++........++.+. .--...+..++|+
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 54 888899999888888999999999999986654443332 2 34455555555444221 1123456677787
Q ss_pred hcCCHHHHHHHHHcCC--hHHHHHHHhcCCcchH-HHHHHHHHHhccCCCHHHHHHHHHc--CChHH-------------
Q 043676 285 TAGNREQIQAVIDAGL--IRPIVNLLQNAEFDTK-KEAAWAISNATSGGTQEQIKHLVRE--GCVKP------------- 346 (446)
Q Consensus 285 ~~~~~~~~~~~~~~~~--i~~L~~ll~~~~~~v~-~~a~~aL~~l~~~~~~~~~~~l~~~--~~i~~------------- 346 (446)
+. .+..+..+..... ...+..+.. .+..+| ...+..|.|++... ..-..++.. ++++.
T Consensus 160 s~-~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~sE 235 (353)
T KOG2973|consen 160 SQ-FEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEELSE 235 (353)
T ss_pred hh-hhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCccccCH
Confidence 54 3555566654443 333444433 344444 45666777766532 111111111 11111
Q ss_pred --------HHhccc-----CCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhh-cCCCHH
Q 043676 347 --------LCDLLL-----CSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQ-SHDNNE 412 (446)
Q Consensus 347 --------L~~ll~-----~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~~~ 412 (446)
=.+++. .+++.++...+.+|..++.-.. .++.++.-|+-+.+..+. .-++++
T Consensus 236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~--------------GRe~lR~kgvYpilRElhk~e~ded 301 (353)
T KOG2973|consen 236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA--------------GREVLRSKGVYPILRELHKWEEDED 301 (353)
T ss_pred HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH--------------hHHHHHhcCchHHHHHHhcCCCcHH
Confidence 124442 4678899999999988775333 378999999999998885 446888
Q ss_pred HHHHHHHHHHHhcC
Q 043676 413 IHEKSVKIFKTYWC 426 (446)
Q Consensus 413 v~~~a~~~l~~~~~ 426 (446)
+.+...++.+-+..
T Consensus 302 ~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 302 IREACEQVVQMLVR 315 (353)
T ss_pred HHHHHHHHHHHHHh
Confidence 88887777776655
No 95
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=1e-05 Score=81.44 Aligned_cols=340 Identities=12% Similarity=0.108 Sum_probs=199.4
Q ss_pred HHHHhhcCCCHHHHHHHH-HHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcC-CChhhHHH
Q 043676 6 ALVAGVWSDDNSLQLEAT-TLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIAS-GTSENTNV 83 (446)
Q Consensus 6 ~l~~~l~s~~~~~~~~a~-~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~ 83 (446)
.|...+.|.+|..|..++ |.|. +...-...+........+...+.++|.+.+ +-+|..|.+.++-+-+ ++...+..
T Consensus 822 ~l~~~~~s~nph~R~A~~VWLLs-~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~~ 899 (1702)
T KOG0915|consen 822 LLDTLLTSPNPHERQAGCVWLLS-LVQYLGQQPEVVLMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKKS 899 (1702)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHH-HHHHhccCchhhhccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHHH
Confidence 345566788998888654 5554 332211222223333456688889999888 7888888888766554 33444444
Q ss_pred HHhcCChHHHHHhhCC-----CCHHH-------------HHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccch
Q 043676 84 VIDHGAVPIFVKLLSS-----PSDDV-------------REQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKL 145 (446)
Q Consensus 84 ~~~~~~i~~L~~~L~~-----~~~~v-------------~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~ 145 (446)
+++ +.+..|..-=+. .+.++ ....-.=|+|++++-. +-..+-.++++-..+...
T Consensus 900 LV~-sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-------qPdLVYKFM~LAnh~A~w 971 (1702)
T KOG0915|consen 900 LVD-SLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG-------QPDLVYKFMQLANHNATW 971 (1702)
T ss_pred HHH-HHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-------ChHHHHHHHHHhhhhchh
Confidence 332 223333321010 11111 1122233444542211 111234455555444455
Q ss_pred hHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC
Q 043676 146 SMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH 225 (446)
Q Consensus 146 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~ 225 (446)
.-+.-|+.-+..++..............+|.|.++=.+++..++.....+-..+...+.......+. .+++-|+.-+.+
T Consensus 972 nSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~ 1050 (1702)
T KOG0915|consen 972 NSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTS 1050 (1702)
T ss_pred hcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccc
Confidence 6666777777877776544444455778888888888999999988777777777665555554444 788888888999
Q ss_pred CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHH---HHHHHHHHhcC-----CHHHHHHHHH
Q 043676 226 PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKE---ISWIISNITAG-----NREQIQAVID 297 (446)
Q Consensus 226 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~---a~~~l~~l~~~-----~~~~~~~~~~ 297 (446)
..+++|+.+|.++..|..+.+.....-.-..+...+...+.+- .+.||+. ++.+++.++.. +...-..+++
T Consensus 1051 kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~ 1129 (1702)
T KOG0915|consen 1051 KEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGKEALD 1129 (1702)
T ss_pred hhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH
Confidence 9999999999999999987653221100012333444445444 5667765 45666666531 1111112222
Q ss_pred cCChHHHHH--HHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHH
Q 043676 298 AGLIRPIVN--LLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361 (446)
Q Consensus 298 ~~~i~~L~~--ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~ 361 (446)
.++|.|+. .+ +.-+++|..++..+..++.........++-+ .++.|.+..+.-++.+..+
T Consensus 1130 -~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~--LIp~ll~~~s~lE~~vLnY 1191 (1702)
T KOG0915|consen 1130 -IILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPK--LIPLLLNAYSELEPQVLNY 1191 (1702)
T ss_pred -HHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhH--HHHHHHHHccccchHHHHH
Confidence 34555543 22 4567899999999999998765544444333 6788888887777665544
No 96
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.58 E-value=2e-05 Score=76.33 Aligned_cols=383 Identities=15% Similarity=0.111 Sum_probs=245.2
Q ss_pred hHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 4 FPALVAGVWSDD-NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 4 i~~l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
+-.++..+..++ .+.+..++..+....-.. .+ ..++....+..-++.++.. +.++..++.-+++++..-+...
T Consensus 199 lv~l~~~l~~~d~~~sr~sacglf~~~~~~~-~~---~~vk~elr~~~~~lc~d~~-~~Vr~~~a~~l~~~a~~~~~~~- 272 (759)
T KOG0211|consen 199 LVPLLKRLATGDWFQSRLSACGLFGKLYVSL-PD---DAVKRELRPIVQSLCQDDT-PMVRRAVASNLGNIAKVLESEI- 272 (759)
T ss_pred HHHHHHHccchhhhhcchhhhhhhHHhccCC-Ch---HHHHHHHHHHHHhhccccc-hhhHHHHHhhhHHHHHHHHHHH-
Confidence 345566666545 566777878888776654 22 2344455677777777777 8999999999999987333332
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhC--CCh-HHHHHHHHcCChHHHHHHhccccchhHHHHHHHHH----
Q 043676 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAG--DSP-RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTL---- 155 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~--~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L---- 155 (446)
...+.++.+..+..+....+|+.|...+.++.. ..+ ..... ..+.+++.. .+.+..++.......
T Consensus 273 --~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~-----~~~~l~~~~-~d~~~~v~~~~~~~~~~L~ 344 (759)
T KOG0211|consen 273 --VKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKS-----LTESLVQAV-EDGSWRVSYMVADKFSELS 344 (759)
T ss_pred --HHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhh-----hhHHHHHHh-cChhHHHHHHHhhhhhhHH
Confidence 235678999999999999999999988888873 222 22111 233444444 333333322222221
Q ss_pred -----------------------------------HHhhcCCC--CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHH
Q 043676 156 -----------------------------------SNFCRGKP--EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSY 198 (446)
Q Consensus 156 -----------------------------------~~l~~~~~--~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~ 198 (446)
..++...+ .........++|.+..+..+.+..++...+..+..
T Consensus 345 ~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~ 424 (759)
T KOG0211|consen 345 SAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITG 424 (759)
T ss_pred HHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccc
Confidence 11211110 01111223445666666667777777777766666
Q ss_pred hccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHH
Q 043676 199 LADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEIS 278 (446)
Q Consensus 199 l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~ 278 (446)
+....+... . -....+.+...+++..+.++....+.+..+-..++...........++.+..+-... ..+++.+..
T Consensus 425 ~~p~~~k~~--t-i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail 500 (759)
T KOG0211|consen 425 LSPILPKER--T-ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAIL 500 (759)
T ss_pred cCccCCcCc--C-ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHH
Confidence 653333100 1 115567777788888889999888877777665555555556667888888888877 889999999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHH
Q 043676 279 WIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEI 358 (446)
Q Consensus 279 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~ 358 (446)
+.+..++.... ..+.+...-+.+...+.+....+++.|+..+..++..-+.+. .....++.+..+..+++...
T Consensus 501 ~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w----~~~~~i~k~L~~~~q~~y~~ 573 (759)
T KOG0211|consen 501 EYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEW----ARLEEIPKLLAMDLQDNYLV 573 (759)
T ss_pred HHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcch----hHHHhhHHHHHHhcCcccch
Confidence 98888865321 223332344444455656677899999998888876432111 11225777777777778888
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043676 359 VTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCG 427 (446)
Q Consensus 359 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 427 (446)
|...+.++..+.....+. +.....++.+.++..++.++|+-.+.+.+..+...
T Consensus 574 R~t~l~si~~la~v~g~e----------------i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 574 RMTTLFSIHELAEVLGQE----------------ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred hhHHHHHHHHHHHHhccH----------------HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence 999999999877765543 22334477888999999999998888888877543
No 97
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.55 E-value=1.5e-06 Score=63.15 Aligned_cols=115 Identities=15% Similarity=0.093 Sum_probs=99.5
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676 45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD 124 (446)
Q Consensus 45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~ 124 (446)
+.+..|+.-.+...+.+.+++...-|.|.+. +|.+-..+.+.++++.++..|..++..+.+.++..|+|+|.+. ....
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~-~n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDK-TNAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccCh-HHHH
Confidence 4566677666665558999999999999998 8999999999999999999999999999999999999999655 4678
Q ss_pred HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676 125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK 162 (446)
Q Consensus 125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 162 (446)
.+.+.++++.++..+ .++...+...++.++..|+...
T Consensus 94 ~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 94 FIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE 130 (173)
T ss_pred HHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence 899999999999999 7777788888999999888775
No 98
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.55 E-value=3.4e-05 Score=70.26 Aligned_cols=244 Identities=17% Similarity=0.045 Sum_probs=165.2
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676 45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD 124 (446)
Q Consensus 45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~ 124 (446)
.+++.++..+.....+++...++.++..... + ..+..|+..|.++++.++..+..+|+.+- .+
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--~~---- 116 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLG--GR---- 116 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC--ch----
Confidence 4677888888543336777666655542221 1 13788999999999999999999988654 11
Q ss_pred HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCc
Q 043676 125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTN 204 (446)
Q Consensus 125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~ 204 (446)
...+.|+.++ ++.++.++..++.++...-. ...+.+..++++.++.++..++.+++.+...
T Consensus 117 -----~a~~~L~~~L-~~~~p~vR~aal~al~~r~~-----------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-- 177 (410)
T TIGR02270 117 -----QAEPWLEPLL-AASEPPGRAIGLAALGAHRH-----------DPGPALEAALTHEDALVRAAALRALGELPRR-- 177 (410)
T ss_pred -----HHHHHHHHHh-cCCChHHHHHHHHHHHhhcc-----------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence 1356777888 77788888888877766221 2356788888899999999999999886543
Q ss_pred HHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHH
Q 043676 205 DKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNI 284 (446)
Q Consensus 205 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l 284 (446)
..++.|...+.+.++.||..|+..+..+.. +. ....+....... .......+...+...
T Consensus 178 ---------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~-g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ---------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLE-GGPHRQRLLVLLAVA 236 (410)
T ss_pred ---------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhcc-CccHHHHHHHHHHhC
Confidence 445667777889999999999998866643 21 234455433333 333333333333332
Q ss_pred hcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHH
Q 043676 285 TAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLI 364 (446)
Q Consensus 285 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~ 364 (446)
+++ ..++.|..++++. .++..++.+++.+-.. . .++.|++.+.+.. +...|-+
T Consensus 237 --~~~---------~a~~~L~~ll~d~--~vr~~a~~AlG~lg~p---~---------av~~L~~~l~d~~--~aR~A~e 289 (410)
T TIGR02270 237 --GGP---------DAQAWLRELLQAA--ATRREALRAVGLVGDV---E---------AAPWCLEAMREPP--WARLAGE 289 (410)
T ss_pred --Cch---------hHHHHHHHHhcCh--hhHHHHHHHHHHcCCc---c---------hHHHHHHHhcCcH--HHHHHHH
Confidence 222 3677788888764 4999999999987542 2 4677777776443 8888999
Q ss_pred HHHHHHHh
Q 043676 365 GLENILKV 372 (446)
Q Consensus 365 ~l~~l~~~ 372 (446)
++..+.-.
T Consensus 290 A~~~ItG~ 297 (410)
T TIGR02270 290 AFSLITGM 297 (410)
T ss_pred HHHHhhCC
Confidence 99887653
No 99
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.54 E-value=9.7e-06 Score=72.85 Aligned_cols=312 Identities=16% Similarity=0.173 Sum_probs=195.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHcCCChhhHHHHH
Q 043676 7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRED-YPQLQYEAAWVLINIASGTSENTNVVI 85 (446)
Q Consensus 7 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~ 85 (446)
+..++-+++..++-.+.+.++.+..+ ......+.+.++--.++.-|..++ ...-|++|++.+..+.... ...+ .+
T Consensus 30 i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~-~~~~-~~ 105 (371)
T PF14664_consen 30 IQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK-KGPK-EI 105 (371)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc-CCcc-cC
Confidence 33345566699999999999988776 566777777776666666665543 3567889999988887631 1111 23
Q ss_pred hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC
Q 043676 86 DHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEP 165 (446)
Q Consensus 86 ~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 165 (446)
..|++..++.+.+++++..+..|+.+++.++-.+|+ .+...|++..+++.+.+ +..++....+.++.++...+..+
T Consensus 106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p~tR 181 (371)
T PF14664_consen 106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALID-GSFSISESLLDTLLYLLDSPRTR 181 (371)
T ss_pred CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCcchh
Confidence 557899999999999999999999999999988775 67889999999999954 54458889999999999887555
Q ss_pred ChhhhhhhHHHHHHhhcC-------CCH--hHHHHHHHHHHHhccCCcHHHHHHHH-hCcHHHHHHhcCCCCccchhHHH
Q 043676 166 PFDQVRPALPALAQLVHS-------NDE--DVLTYACWSLSYLADGTNDKIQAVIE-AGVCPRLVELLGHPSPSVLTPAL 235 (446)
Q Consensus 166 ~~~~~~~~~~~l~~ll~~-------~~~--~v~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~~~~a~ 235 (446)
.......-+..+..-+.+ ++. +....+..++..+.+.-+.....-.. ...+..++..|..+++++|...+
T Consensus 182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Il 261 (371)
T PF14664_consen 182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAIL 261 (371)
T ss_pred hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHH
Confidence 544432223333322221 122 34555666666665544433221111 14678899999999999999998
Q ss_pred HHHHHhhcCCch-hhHHHH------hcCCh---HHHHHHhccCchHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHH
Q 043676 236 RTVGNIVTGDDF-QTQCII------NHGAV---PYLLDMLVHNHEEIIKKEISWIISNITAGN-REQIQAVIDAGLIRPI 304 (446)
Q Consensus 236 ~~l~~l~~~~~~-~~~~~~------~~~~~---~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~L 304 (446)
..+..+..-... ...... ..+-+ ..+..-.... ....... ...=.++..+. .-....++++|+++.|
T Consensus 262 dll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~-~~~~~~~-~~~~~~l~~~y~aLll~ili~~gL~~~L 339 (371)
T PF14664_consen 262 DLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEA-KSILPHR-SSKRPNLVNHYLALLLAILIEAGLLEAL 339 (371)
T ss_pred HHHHHHHCCCCCCcccchhhcccccccccccchhhhccccccc-ccccCcc-ccccccHHHHHHHHHHHHHHHcChHHHH
Confidence 888888653321 111111 11111 0000000000 0000000 00001111110 1122346689999999
Q ss_pred HHHHhcC-CcchHHHHHHHHHHhcc
Q 043676 305 VNLLQNA-EFDTKKEAAWAISNATS 328 (446)
Q Consensus 305 ~~ll~~~-~~~v~~~a~~aL~~l~~ 328 (446)
+++..+. ++.+..+|...|+.+..
T Consensus 340 ~~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 340 VELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHH
Confidence 9999987 88899999888887653
No 100
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.51 E-value=5.1e-05 Score=68.68 Aligned_cols=250 Identities=27% Similarity=0.310 Sum_probs=177.8
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
.++.+.+.+.+.++.++..+++.+..+... ..++.+..++.+.+ +.+|..|+.+|+.+-. +
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~--~---- 104 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGD--P---- 104 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCC--h----
Confidence 567788889999999999999886654322 46999999999999 8999999999988865 2
Q ss_pred HHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcccc-----------chhHHHH
Q 043676 83 VVIDHGAVPIFVKLLS-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA-----------KLSMLRN 150 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-----------~~~~~~~ 150 (446)
..++.++.++. +++..+|..+.++|+.+-... .+.+++..+.+.. ...++..
T Consensus 105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~ 168 (335)
T COG1413 105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAA 168 (335)
T ss_pred -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 35788888888 599999999999999876221 2567777773322 0134555
Q ss_pred HHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccc
Q 043676 151 ATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSV 230 (446)
Q Consensus 151 a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 230 (446)
+...+..+-. ...++.+...+.+.+..++..+..+++.+.... ..+.+.+...+.+++..+
T Consensus 169 a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~v 229 (335)
T COG1413 169 AAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEV 229 (335)
T ss_pred HHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHH
Confidence 6555555533 245678888888888899999999998877654 245577888888888889
Q ss_pred hhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc
Q 043676 231 LTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN 310 (446)
Q Consensus 231 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 310 (446)
+..++..++.+-... ....+...+... +..++..+...+... ... .....+...+.+
T Consensus 230 r~~~~~~l~~~~~~~-----------~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~~---------~~~~~l~~~~~~ 286 (335)
T COG1413 230 RKAALLALGEIGDEE-----------AVDALAKALEDE-DVILALLAAAALGAL--DLA---------EAALPLLLLLID 286 (335)
T ss_pred HHHHHHHhcccCcch-----------hHHHHHHHHhcc-chHHHHHHHHHhccc--Cch---------hhHHHHHHHhhc
Confidence 998888887665422 356677777777 666665555544411 111 234456666666
Q ss_pred CCcchHHHHHHHHHHhccC
Q 043676 311 AEFDTKKEAAWAISNATSG 329 (446)
Q Consensus 311 ~~~~v~~~a~~aL~~l~~~ 329 (446)
.+..++..+..++......
T Consensus 287 ~~~~~~~~~~~~l~~~~~~ 305 (335)
T COG1413 287 EANAVRLEAALALGQIGQE 305 (335)
T ss_pred chhhHHHHHHHHHHhhccc
Confidence 7777787888777777653
No 101
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=0.00025 Score=66.35 Aligned_cols=302 Identities=14% Similarity=0.093 Sum_probs=181.5
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc-ccchhHHHHHHHHHHHhhcCCCCCChh
Q 043676 90 VPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE-HAKLSMLRNATRTLSNFCRGKPEPPFD 168 (446)
Q Consensus 90 i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~ 168 (446)
+..+.+=|.+.++.....|+.+++|+-+. +.++.+. ..+-++|.. +...-++..++.+|..|.+.. .+..
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~s--pDl~ 183 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKS--PDLV 183 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcC--cccc
Confidence 34555556667888889999999998632 2333332 223355533 234567888888888888774 4455
Q ss_pred hhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-------------CCccchhHHH
Q 043676 169 QVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-------------PSPSVLTPAL 235 (446)
Q Consensus 169 ~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-------------~~~~~~~~a~ 235 (446)
...+....++.+|.+.+..+...+...+..++...++.....+. -.+..|..+... +.|-+....+
T Consensus 184 ~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~ 262 (938)
T KOG1077|consen 184 NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLL 262 (938)
T ss_pred ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHH
Confidence 55688899999999999999999999999999877765542211 122222222211 3345666677
Q ss_pred HHHHHhhcCCc-hhhHHHHhcCChHHHHHHhccCc------hHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 043676 236 RTVGNIVTGDD-FQTQCIINHGAVPYLLDMLVHNH------EEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLL 308 (446)
Q Consensus 236 ~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~l~~~~------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll 308 (446)
+.|.++-...+ ..+..+. .+++.++...+.+. ....+...++-..+++.+-...-..+. ..+..|-+++
T Consensus 263 rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fl 338 (938)
T KOG1077|consen 263 RLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFL 338 (938)
T ss_pred HHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHh
Confidence 77776633222 2222222 24455555544221 112333344444444442111112222 3677888999
Q ss_pred hcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhccc-CCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccc
Q 043676 309 QNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL-CSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVN 387 (446)
Q Consensus 309 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 387 (446)
.+.++.+|.-|+..++.++... .....+.. -.+.++..|+ +.|..++..+++.|+.+++.+..
T Consensus 339 s~rE~NiRYLaLEsm~~L~ss~--~s~davK~--h~d~Ii~sLkterDvSirrravDLLY~mcD~~Na------------ 402 (938)
T KOG1077|consen 339 SHRETNIRYLALESMCKLASSE--FSIDAVKK--HQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA------------ 402 (938)
T ss_pred hcccccchhhhHHHHHHHHhcc--chHHHHHH--HHHHHHHHhccccchHHHHHHHHHHHHHhchhhH------------
Confidence 9999999999999999998753 22222222 2677888887 78999999999999997765432
Q ss_pred hHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043676 388 QYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYW 425 (446)
Q Consensus 388 ~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 425 (446)
+.+. .+.++.|.....+-.+++.-++.-+-++|-
T Consensus 403 ---k~IV-~elLqYL~tAd~sireeivlKvAILaEKyA 436 (938)
T KOG1077|consen 403 ---KQIV-AELLQYLETADYSIREEIVLKVAILAEKYA 436 (938)
T ss_pred ---HHHH-HHHHHHHhhcchHHHHHHHHHHHHHHHHhc
Confidence 3333 344555555444444555555554545543
No 102
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.46 E-value=5.4e-05 Score=63.79 Aligned_cols=239 Identities=16% Similarity=0.158 Sum_probs=152.1
Q ss_pred HHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCccchhHHHHHHHHhhcCCchhhHH
Q 043676 174 LPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLTPALRTVGNIVTGDDFQTQC 251 (446)
Q Consensus 174 ~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~~ 251 (446)
...|-.+++.-++-.+.-|.+|+.++......+...-.+...-..++.++++ +...++...+.+++.++. ++...+.
T Consensus 151 leyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqd 229 (432)
T COG5231 151 LEYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQD 229 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHH
Confidence 3444455555577788889999999887655444434444455667777776 567788899999998886 3333322
Q ss_pred HH-hcCChHHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHH-HcCChHHHHHHHhcC--CcchHHHHHHHHHHh
Q 043676 252 II-NHGAVPYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAVI-DAGLIRPIVNLLQNA--EFDTKKEAAWAISNA 326 (446)
Q Consensus 252 ~~-~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~-~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l 326 (446)
+- -...+..++.+.+......+-.-++.++.|++. .....+..+. ..++.+...-+...+ |.+++...-..=..+
T Consensus 230 i~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l 309 (432)
T COG5231 230 IDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRL 309 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 21 123455666666654356777788999999987 3334444444 333555544444433 444432222111111
Q ss_pred ccC---------------------C--------CHHHHHHHHHcC--ChHHHHhcccCCCHH-HHHHHHHHHHHHHHhhh
Q 043676 327 TSG---------------------G--------TQEQIKHLVREG--CVKPLCDLLLCSDPE-IVTVCLIGLENILKVGE 374 (446)
Q Consensus 327 ~~~---------------------~--------~~~~~~~l~~~~--~i~~L~~ll~~~~~~-~~~~~~~~l~~l~~~~~ 374 (446)
... + -.++...+.+.+ .+..|.++++..++. ....|+.-+..+++..+
T Consensus 310 ~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P 389 (432)
T COG5231 310 VQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASP 389 (432)
T ss_pred HhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCc
Confidence 110 0 112344444432 477788888877766 45567777777887777
Q ss_pred hhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043676 375 AERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWC 426 (446)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 426 (446)
.. ...+...|+-+.+.+|++|++++|+-.|.++++.+..
T Consensus 390 E~-------------~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 390 EI-------------NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred hH-------------HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 64 5889999999999999999999999999988887654
No 103
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.43 E-value=2.2e-05 Score=66.04 Aligned_cols=262 Identities=17% Similarity=0.111 Sum_probs=162.9
Q ss_pred HhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHH-hcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 043676 52 EFLMREDYPQLQYEAAWVLINIASGTSENTNVVI-DHGAVPIFVKLLSS--PSDDVREQAVWALGNVAGDSPRCRDLVLS 128 (446)
Q Consensus 52 ~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~~L~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 128 (446)
++++.-+ +-.+.-|++|+.++.. .++.|...- +.-.-..+...+++ +...++.+.+.+++.++. ++.+.+.+-+
T Consensus 156 kl~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K 232 (432)
T COG5231 156 KLSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDK 232 (432)
T ss_pred HHHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 4445555 6688999999999998 777776554 44455667777776 567899999999999984 4445433222
Q ss_pred -cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh--hhh-hHHHHHHhhcC--CCHhHHHHHHHHHHHhccC
Q 043676 129 -QGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQ--VRP-ALPALAQLVHS--NDEDVLTYACWSLSYLADG 202 (446)
Q Consensus 129 -~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~-~~~~l~~ll~~--~~~~v~~~~~~~l~~l~~~ 202 (446)
...+..++++......+.+.+-++..+.|++...|...+.. ..+ +.+..-.+++. .|++++...-..=..+...
T Consensus 233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~ 312 (432)
T COG5231 233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQN 312 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence 22456667777556678899999999999998554332221 223 33443333332 2666665544333333222
Q ss_pred CcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH--hcCChHHHHHHhccCchHHHHHHHHHH
Q 043676 203 TNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCII--NHGAVPYLLDMLVHNHEEIIKKEISWI 280 (446)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~v~~~a~~~ 280 (446)
..... ..+ ..+.-|-.-+-.-+|.-+..-.|. .+.+.+. +..++..+.++++...+...-.-|+.-
T Consensus 313 ~k~l~--~fD-~Y~~ELdsg~l~wSp~H~~~dFWs---------~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~D 380 (432)
T COG5231 313 TKKLC--IFD-NYLNELDSGRLEWSPYHHKKDFWS---------TNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSD 380 (432)
T ss_pred hhhhh--HHH-HHHHHHhhCcccCCCcccccCchh---------hhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhh
Confidence 21111 010 111112111112233333333331 2223333 224678888999877233244557777
Q ss_pred HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhcc
Q 043676 281 ISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATS 328 (446)
Q Consensus 281 l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 328 (446)
+..+.+..|+.+..+.+.|+=..+++++++++++++.+|+.++..+..
T Consensus 381 i~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 381 IFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 888888889999999999999999999999999999999999987754
No 104
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=0.00012 Score=74.03 Aligned_cols=341 Identities=16% Similarity=0.174 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHH
Q 043676 16 NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVK 95 (446)
Q Consensus 16 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 95 (446)
..-+.-|+.-+..++... .+..+... ..++|.|.+.=-+|+ ..+|.....+...+..++....+... ..+++-|+.
T Consensus 971 wnSk~GaAfGf~~i~~~a-~~kl~p~l-~kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~ 1046 (1702)
T KOG0915|consen 971 WNSKKGAAFGFGAIAKQA-GEKLEPYL-KKLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLV 1046 (1702)
T ss_pred hhcccchhhchHHHHHHH-HHhhhhHH-HHhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHH
Confidence 445555666666665543 12222122 246777777766777 88988888887778775455555544 356788888
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCChH--HHHHHHHcCChHHHHHHhccccchhHHHH---HHHHHHHhhcCC-CCCChhh
Q 043676 96 LLSSPSDDVREQAVWALGNVAGDSPR--CRDLVLSQGALIPLLAELNEHAKLSMLRN---ATRTLSNFCRGK-PEPPFDQ 169 (446)
Q Consensus 96 ~L~~~~~~v~~~a~~~l~~l~~~~~~--~~~~~~~~~~i~~l~~~l~~~~~~~~~~~---a~~~L~~l~~~~-~~~~~~~ 169 (446)
-+.+....+|+.++.+|..+..+.+. ..+.+.+ ....+.+.+ ++-.+.+|.. ++.+|+.++-.. +...-..
T Consensus 1047 ~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpe--lw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~ 1123 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFDQVKEKLPE--LWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAK 1123 (1702)
T ss_pred hccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCccc
Confidence 88888999999999999999977653 2223222 334444444 3444555554 445555555432 1122222
Q ss_pred hhhhHHHHHHhhc-----CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhH-HHHHHHHhh-
Q 043676 170 VRPALPALAQLVH-----SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTP-ALRTVGNIV- 242 (446)
Q Consensus 170 ~~~~~~~l~~ll~-----~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~-a~~~l~~l~- 242 (446)
-..++..+..++- +.-+++|..++.++..++...+...... -..+++.|+.....-++.+... +++. .+..
T Consensus 1124 ~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~-~~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~ 1201 (1702)
T KOG0915|consen 1124 GKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPH-FPKLIPLLLNAYSELEPQVLNYLSLRL-INIET 1201 (1702)
T ss_pred HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcch-hhHHHHHHHHHccccchHHHHHHHHhh-hhhHH
Confidence 2333444443332 4568999999999999998877655432 2367778887777655544332 2322 1111
Q ss_pred -----------cCCch---------hhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Q 043676 243 -----------TGDDF---------QTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIR 302 (446)
Q Consensus 243 -----------~~~~~---------~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~ 302 (446)
...|. +.+.-+-...+|.+.++++.+-.-..|..++..+.-++..-........ -..+.
T Consensus 1202 ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s-gKll~ 1280 (1702)
T KOG0915|consen 1202 EALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS-GKLLR 1280 (1702)
T ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch-hHHHH
Confidence 11110 0000001124455555555443344455555555555431000000000 12466
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHH
Q 043676 303 PIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILK 371 (446)
Q Consensus 303 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~ 371 (446)
.++..+++.++.+++..+.|.+.++....+++...+++ ..+..++...++ ....++..+.++..
T Consensus 1281 al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie----~~l~~~l~k~es-~~siscatis~Ian 1344 (1702)
T KOG0915|consen 1281 ALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIE----TLLADLLGKDES-LKSISCATISNIAN 1344 (1702)
T ss_pred HHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHH----HHHHHHhccCCC-ccchhHHHHHHHHH
Confidence 67777778899999999999999999888888877554 223334433332 22444555554433
No 105
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.39 E-value=0.00016 Score=65.97 Aligned_cols=350 Identities=12% Similarity=0.111 Sum_probs=197.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC---ChHHHHHHHHHHHHHcCCChhhHHHHHhcCCh
Q 043676 14 DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRED---YPQLQYEAAWVLINIASGTSENTNVVIDHGAV 90 (446)
Q Consensus 14 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 90 (446)
+++-.|++|+..|..+-.. +.+. ...+++.+..+. +..-....+++...+...+++.+..+ .
T Consensus 202 ~~~isqYHalGlLyq~kr~------dkma----~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~-----r 266 (898)
T COG5240 202 GNPISQYHALGLLYQSKRT------DKMA----QLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL-----R 266 (898)
T ss_pred CChHHHHHHHHHHHHHhcc------cHHH----HHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH-----H
Confidence 4577788888888764332 2233 233444444333 12223333455555555555555444 3
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhh
Q 043676 91 PIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQV 170 (446)
Q Consensus 91 ~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 170 (446)
+.|-..+++.-+.+.-.+++.++.++..+-. ....+ ..+..|-.+| +++....+-.|+++|..++...|......
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~~-~~vs~L~~fL-~s~rv~~rFsA~Riln~lam~~P~kv~vc- 341 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFVD-QTVSSLRTFL-KSTRVVLRFSAMRILNQLAMKYPQKVSVC- 341 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHHH-HHHHHHHHHH-hcchHHHHHHHHHHHHHHHhhCCceeeec-
Confidence 6666677777788888888888888754311 11111 1344555555 77788899999999999999876543322
Q ss_pred hhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhH
Q 043676 171 RPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQ 250 (446)
Q Consensus 171 ~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~ 250 (446)
-+.+-.++.+.+..+..+|+..|..-. .++.+..++ ..+..++.+-+...+.-+..++..|+...|....
T Consensus 342 ---N~evEsLIsd~Nr~IstyAITtLLKTG--t~e~idrLv-----~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~ 411 (898)
T COG5240 342 ---NKEVESLISDENRTISTYAITTLLKTG--TEETIDRLV-----NLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKL 411 (898)
T ss_pred ---ChhHHHHhhcccccchHHHHHHHHHcC--chhhHHHHH-----HHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHH
Confidence 244556667777777777776665432 333343233 3333333333333344444444444443333222
Q ss_pred HHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCC
Q 043676 251 CIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGG 330 (446)
Q Consensus 251 ~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 330 (446)
. .+..|...|......+.+..++.+++.+....|+... .++..|+..+.+.. .-+.+...|+-+...+
T Consensus 412 s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDce--y~~I~vrIL~iLG~Eg 479 (898)
T COG5240 412 S-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCE--YHQITVRILGILGREG 479 (898)
T ss_pred H-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcc--hhHHHHHHHHHhcccC
Confidence 2 3455666665544788899999999988876666544 34567777776543 3344555555554432
Q ss_pred CHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCC
Q 043676 331 TQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDN 410 (446)
Q Consensus 331 ~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~ 410 (446)
....- ....+..+..-+--.+.-++..|+.+|.++.-..+.. +...-....+.+.+++.+
T Consensus 480 P~a~~----P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~----------------~~~~sv~~~lkRclnD~D 539 (898)
T COG5240 480 PRAKT----PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV----------------VSPQSVENALKRCLNDQD 539 (898)
T ss_pred CCCCC----cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc----------------ccHHHHHHHHHHHhhccc
Confidence 11000 0001222333223346678888888888754322211 111112345778899999
Q ss_pred HHHHHHHHHHHHHhc
Q 043676 411 NEIHEKSVKIFKTYW 425 (446)
Q Consensus 411 ~~v~~~a~~~l~~~~ 425 (446)
.+++++|.-.++.+-
T Consensus 540 deVRdrAsf~l~~~~ 554 (898)
T COG5240 540 DEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999998887654
No 106
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=2.9e-05 Score=71.72 Aligned_cols=219 Identities=12% Similarity=0.118 Sum_probs=147.2
Q ss_pred HHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCc-----HHHHH
Q 043676 135 LLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTN-----DKIQA 209 (446)
Q Consensus 135 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~-----~~~~~ 209 (446)
+..+. .+.+..++.+|+..|..|.... ....-+....+.++.+++..+|..|+..+.-.....+ +....
T Consensus 203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 55555 6778888888888888887642 2224466788899999999999999777655543321 11111
Q ss_pred HHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHH-HHHHH--hc
Q 043676 210 VIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISW-IISNI--TA 286 (446)
Q Consensus 210 ~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~-~l~~l--~~ 286 (446)
-..-.++..+...+.+.+..+|..|+..++.+-.-+++.....++..++..+-.. ....+... ..++- ++
T Consensus 277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRk-------r~ahkrpk~l~s~GewSs 349 (823)
T KOG2259|consen 277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRK-------RTAHKRPKALYSSGEWSS 349 (823)
T ss_pred hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhh-------hhcccchHHHHhcCCccc
Confidence 1122667788889999999999999999998887666655555544443322211 11111111 11111 11
Q ss_pred -----------CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCC
Q 043676 287 -----------GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSD 355 (446)
Q Consensus 287 -----------~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 355 (446)
...+.-..++.+|.-..++.-+.++-.+||..|...++.++.. .+..... .+..|++++.+..
T Consensus 350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-sP~FA~~-----aldfLvDMfNDE~ 423 (823)
T KOG2259|consen 350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-SPGFAVR-----ALDFLVDMFNDEI 423 (823)
T ss_pred CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-CCCcHHH-----HHHHHHHHhccHH
Confidence 1112234567778778888888888889999999999999886 3444333 5888999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 043676 356 PEIVTVCLIGLENILKV 372 (446)
Q Consensus 356 ~~~~~~~~~~l~~l~~~ 372 (446)
..++..|+.+|..+...
T Consensus 424 ~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 424 EVVRLKAIFALTMISVH 440 (823)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988765
No 107
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.38 E-value=8.8e-05 Score=67.12 Aligned_cols=248 Identities=24% Similarity=0.305 Sum_probs=173.2
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676 45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD 124 (446)
Q Consensus 45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~ 124 (446)
..++.+.+.+.+++ ..++..+++.++.+.. ...++.+..++.+.++.+|..+..+|+.+- .+.
T Consensus 43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~~--- 105 (335)
T COG1413 43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--DPE--- 105 (335)
T ss_pred hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Chh---
Confidence 46888999999997 8999999999877765 245899999999999999999999888764 222
Q ss_pred HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCH------------hHHHHH
Q 043676 125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDE------------DVLTYA 192 (446)
Q Consensus 125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~------------~v~~~~ 192 (446)
.++.++..+..+.+..++..+.++|..+-... .+..++..+.+... .++..+
T Consensus 106 ------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 106 ------AVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 46788898855789999999999999886542 35666677766542 344444
Q ss_pred HHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHH
Q 043676 193 CWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEI 272 (446)
Q Consensus 193 ~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 272 (446)
...++.+-. ...++.+...+.+.+..+|..|...++.+.... ..+.+.+...+.++ +..
T Consensus 170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~ 228 (335)
T COG1413 170 AEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE 228 (335)
T ss_pred HHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence 444443321 245677788888888888999999888887754 23456777888888 888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhccc
Q 043676 273 IKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL 352 (446)
Q Consensus 273 v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~ 352 (446)
+|..++.+++.+-. . ..++.+...+.+.+..++..+..++...-. . .....+...+.
T Consensus 229 vr~~~~~~l~~~~~--~---------~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~---~---------~~~~~l~~~~~ 285 (335)
T COG1413 229 VRKAALLALGEIGD--E---------EAVDALAKALEDEDVILALLAAAALGALDL---A---------EAALPLLLLLI 285 (335)
T ss_pred HHHHHHHHhcccCc--c---------hhHHHHHHHHhccchHHHHHHHHHhcccCc---h---------hhHHHHHHHhh
Confidence 99988888887732 2 245667777777777766666655551110 0 12334445555
Q ss_pred CCCHHHHHHHHHHHHHH
Q 043676 353 CSDPEIVTVCLIGLENI 369 (446)
Q Consensus 353 ~~~~~~~~~~~~~l~~l 369 (446)
+.+..++..+...+..+
T Consensus 286 ~~~~~~~~~~~~~l~~~ 302 (335)
T COG1413 286 DEANAVRLEAALALGQI 302 (335)
T ss_pred cchhhHHHHHHHHHHhh
Confidence 56666666655555543
No 108
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=1.3e-05 Score=73.89 Aligned_cols=254 Identities=15% Similarity=0.115 Sum_probs=164.3
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC------CC
Q 043676 92 IFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP------EP 165 (446)
Q Consensus 92 ~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~------~~ 165 (446)
-+..+..+.+..++..|+..+..+..+.. .... .....+..+ .+.+..++..|+..++......| ..
T Consensus 202 ~l~~~~~~~D~~Vrt~A~eglL~L~eg~k-L~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 202 GLIYLEHDQDFRVRTHAVEGLLALSEGFK-LSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhccccc-ccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 36666777778888888888777775322 2222 244566777 67788899888766655544331 22
Q ss_pred ChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhc--
Q 043676 166 PFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT-- 243 (446)
Q Consensus 166 ~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~-- 243 (446)
........+..+...+++.+..+|..+..+++.+-..+.+......+..++..+-..- ...-+...+..=+..++
T Consensus 275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr---~ahkrpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKR---TAHKRPKALYSSGEWSSGK 351 (823)
T ss_pred hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhh---hcccchHHHHhcCCcccCc
Confidence 2333466778888889999999999999999988766665555444433333221110 00001111111111111
Q ss_pred ---------CCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcc
Q 043676 244 ---------GDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFD 314 (446)
Q Consensus 244 ---------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 314 (446)
..+.....++.+|.-..++.-+.++ -.+||.+|+..++.++..+|.... ..+..|+++++++...
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~ 425 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEV 425 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHH
Confidence 1223344577888888999999888 899999999999999876554322 3677899999999999
Q ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHH
Q 043676 315 TKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLEN 368 (446)
Q Consensus 315 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~ 368 (446)
||..|+.+|..++.+.. +++..++.+.+.|.+.+++++......|.+
T Consensus 426 VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 426 VRLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999999876421 222346667777777777777766555554
No 109
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.36 E-value=0.0013 Score=63.61 Aligned_cols=140 Identities=18% Similarity=0.162 Sum_probs=103.3
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV 83 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 83 (446)
+|.+++...+.|.+++...-..+...+... + ...+. .++.+.+=+++++ +.+|..|++.++.+-. ++...
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~--P-~~~lL---avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~- 126 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLK--P-ELALL---AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG- 126 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccC--H-HHHHH---HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH-
Confidence 345566666677777777777777666653 2 12222 3677778888899 8999999999988754 33322
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG 161 (446)
Q Consensus 84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 161 (446)
.+++.+.+++.++++.||..|+.++.++-+-++. ...+.|.+..+..++ .+.++.+..+|+.+|..+...
T Consensus 127 ----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 ----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence 3478899999999999999999999999866543 455666666666666 789999999999999988665
No 110
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.35 E-value=3.3e-05 Score=76.22 Aligned_cols=259 Identities=16% Similarity=0.143 Sum_probs=169.8
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCC---ChhhHHHHHhcCChH
Q 043676 15 DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASG---TSENTNVVIDHGAVP 91 (446)
Q Consensus 15 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~ 91 (446)
..+.+..|+..|..++.... .+..-..++|.++.++.++. .++|..|+.+|..+... -+..-..+...-++|
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~----de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP 510 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYID----DEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPPSDANIFPEYLFP 510 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcc----hHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhh
Confidence 35678889999988766531 12222368999999999999 89999999998887751 122222333345677
Q ss_pred HHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHH---HHHHHc------------------------CChHHHHHHhcccc
Q 043676 92 IFVKLLSS-PSDDVREQAVWALGNVAGDSPRCR---DLVLSQ------------------------GALIPLLAELNEHA 143 (446)
Q Consensus 92 ~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~---~~~~~~------------------------~~i~~l~~~l~~~~ 143 (446)
.|-.++.+ ....+|..-+..|..++....... ..+... ..+...+.-|..++
T Consensus 511 ~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~ 590 (1431)
T KOG1240|consen 511 HLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDS 590 (1431)
T ss_pred hhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCC
Confidence 78788877 445566665666666552211110 000000 01222233232455
Q ss_pred chhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc
Q 043676 144 KLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELL 223 (446)
Q Consensus 144 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll 223 (446)
++-+++..+..+.-||... .......-+++.|+.+|++.|+.+|..-...|..++..-..+ -++..++|.|.+-|
T Consensus 591 ~~~Vkr~Lle~i~~LC~FF--Gk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---s~seyllPLl~Q~l 665 (1431)
T KOG1240|consen 591 PPIVKRALLESIIPLCVFF--GKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR---SVSEYLLPLLQQGL 665 (1431)
T ss_pred chHHHHHHHHHHHHHHHHh--hhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---eHHHHHHHHHHHhc
Confidence 5667777777777776542 112223456788999999999999988888887666332211 13447889999999
Q ss_pred CCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc
Q 043676 224 GHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA 286 (446)
Q Consensus 224 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 286 (446)
.+.++.|...|++++.-|+...--....+. .+++....+|-++ +.-+|..++..|.....
T Consensus 666 tD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 666 TDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred cCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence 999999999999999999874432222222 3677788888999 99999999998888764
No 111
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.34 E-value=1.2e-06 Score=51.25 Aligned_cols=40 Identities=45% Similarity=0.905 Sum_probs=38.0
Q ss_pred ChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 043676 77 TSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVA 116 (446)
Q Consensus 77 ~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~ 116 (446)
+++++..+++.|+++.|+++|+++++++++.|+|+|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999999999999997
No 112
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.32 E-value=8.4e-05 Score=73.46 Aligned_cols=295 Identities=15% Similarity=0.113 Sum_probs=187.1
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC----CC
Q 043676 90 VPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK----PE 164 (446)
Q Consensus 90 i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~----~~ 164 (446)
++.+...++. .....+..|+..|..++..... ...-..++|.++.++ .++..+++..|+.+|..+...- +.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 3455555555 4567788889988888843321 111223688899888 7888999999999988765432 44
Q ss_pred CChhhhhhhHHHHHHhhcC-CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676 165 PPFDQVRPALPALAQLVHS-NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT 243 (446)
Q Consensus 165 ~~~~~~~~~~~~l~~ll~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~ 243 (446)
.......-++|.|..++.+ ....+|..-+.+|..++.... .+.+.+.-.....++..++.+... -.
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nset~~---------~~ 566 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSETAP---------EQ 566 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCccccccc---------cc
Confidence 4555567788999999887 567778888888888775422 122222222222234443332000 00
Q ss_pred CCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHH
Q 043676 244 GDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWA 322 (446)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 322 (446)
........+. ..+-+....++.++ ++-||..-+..|.-||.. ..+. -+.-+++.|+..|+++|+.+|..-...
T Consensus 567 ~~~~~~~~L~-~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk~k----sND~iLshLiTfLNDkDw~LR~aFfds 640 (1431)
T KOG1240|consen 567 NYNTELQALH-HTVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGKEK----SNDVILSHLITFLNDKDWRLRGAFFDS 640 (1431)
T ss_pred ccchHHHHHH-HHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhhcc----cccchHHHHHHHhcCccHHHHHHHHhh
Confidence 1112222222 23445667777777 788888888778877651 1110 011368999999999999999887777
Q ss_pred HHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHH
Q 043676 323 ISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKI 402 (446)
Q Consensus 323 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 402 (446)
+.-++..-.... .++..+|.|.+-|.++++-|...|++++..+++.+--.+. ... +.++..
T Consensus 641 I~gvsi~VG~rs----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~----------~v~-----~i~~~v 701 (1431)
T KOG1240|consen 641 IVGVSIFVGWRS----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP----------AVK-----DILQDV 701 (1431)
T ss_pred ccceEEEEeeee----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH----------HHH-----HHHHhh
Confidence 776554322221 2344789999999999999999999999999987654431 111 123344
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhcC
Q 043676 403 ENLQSHDNNEIHEKSVKIFKTYWC 426 (446)
Q Consensus 403 ~~l~~~~~~~v~~~a~~~l~~~~~ 426 (446)
--++-|+|.=|++.+..+|-...+
T Consensus 702 ~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 702 LPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred hhheeCchHHHHHHHHHHHHHHHh
Confidence 456788888888887777665543
No 113
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.31 E-value=0.00024 Score=66.11 Aligned_cols=255 Identities=15% Similarity=0.144 Sum_probs=164.0
Q ss_pred CCcHHHHHhcCCHHHHHHhh---------cCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCC-----
Q 043676 35 NPPIEKVIQSGVVPRFVEFL---------MREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSP----- 100 (446)
Q Consensus 35 ~~~~~~~~~~~~~~~L~~ll---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~----- 100 (446)
......+....++..|.++- ....++.+...|++||+|+...++..|..+.+.|..+.++..|+..
T Consensus 12 ~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~ 91 (446)
T PF10165_consen 12 PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQ 91 (446)
T ss_pred cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCC
Confidence 34455555555566666554 2223379999999999999998999999999999999999999875
Q ss_pred CHHHHHHHHHHHHHhhCCChHHHHHHHHc-CChHHHHHHhccc----------------cchhHHHHHHHHHHHhhcCCC
Q 043676 101 SDDVREQAVWALGNVAGDSPRCRDLVLSQ-GALIPLLAELNEH----------------AKLSMLRNATRTLSNFCRGKP 163 (446)
Q Consensus 101 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~----------------~~~~~~~~a~~~L~~l~~~~~ 163 (446)
+.++.-...+.+.-++...+..+..+.+. +++..++..+... .+......++..+.|+....+
T Consensus 92 ~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~ 171 (446)
T PF10165_consen 92 PSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYP 171 (446)
T ss_pred ChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccC
Confidence 78888888888888887777666665554 6666666655211 133456778888889988774
Q ss_pred CCChhhh----hhhHHHHHHhh---cC--CCHhHHHHHHHHHHHhccCCcHHH-------H----HHHHhCcHHHHHHhc
Q 043676 164 EPPFDQV----RPALPALAQLV---HS--NDEDVLTYACWSLSYLADGTNDKI-------Q----AVIEAGVCPRLVELL 223 (446)
Q Consensus 164 ~~~~~~~----~~~~~~l~~ll---~~--~~~~v~~~~~~~l~~l~~~~~~~~-------~----~~~~~~~~~~l~~ll 223 (446)
....... ..++..+..++ .. .......+++.+|.++-....... . .......+..++.+|
T Consensus 172 ~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~L 251 (446)
T PF10165_consen 172 KSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFL 251 (446)
T ss_pred cccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHH
Confidence 4333233 33444444442 11 135677778888877732111110 0 001113445555555
Q ss_pred CC----CC----ccchhHHHHHHHHhhcCCchhhHHHHh----------------cCChHHHHHHhccCchHHHHHHHHH
Q 043676 224 GH----PS----PSVLTPALRTVGNIVTGDDFQTQCIIN----------------HGAVPYLLDMLVHNHEEIIKKEISW 279 (446)
Q Consensus 224 ~~----~~----~~~~~~a~~~l~~l~~~~~~~~~~~~~----------------~~~~~~l~~~l~~~~~~~v~~~a~~ 279 (446)
.. .. .......+.+|.+++......++.+.. ..+-..|+.++.+. .+.+|..+..
T Consensus 252 d~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vae 330 (446)
T PF10165_consen 252 DKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAE 330 (446)
T ss_pred HHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHH
Confidence 43 11 234556677788888765544443332 24566788999888 6899999999
Q ss_pred HHHHHhcCCHH
Q 043676 280 IISNITAGNRE 290 (446)
Q Consensus 280 ~l~~l~~~~~~ 290 (446)
.+..+|..+..
T Consensus 331 llf~Lc~~d~~ 341 (446)
T PF10165_consen 331 LLFVLCKEDAS 341 (446)
T ss_pred HHHHHHhhhHH
Confidence 99888765443
No 114
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.23 E-value=2.5e-06 Score=49.82 Aligned_cols=40 Identities=40% Similarity=0.707 Sum_probs=37.4
Q ss_pred CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhc
Q 043676 288 NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNAT 327 (446)
Q Consensus 288 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 327 (446)
++++++.+++.|++|.|++++++.++++++.|+|+|+|++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678889999999999999999999999999999999986
No 115
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.22 E-value=2.8e-05 Score=66.02 Aligned_cols=187 Identities=15% Similarity=0.100 Sum_probs=121.8
Q ss_pred cCCCHhHHHHHHHHHHHhccCC--cHHHHHHHHh--CcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCC
Q 043676 182 HSNDEDVLTYACWSLSYLADGT--NDKIQAVIEA--GVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGA 257 (446)
Q Consensus 182 ~~~~~~v~~~~~~~l~~l~~~~--~~~~~~~~~~--~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~ 257 (446)
.+.+++.+..++.-|..++... ......+... .++..+...+.+....+...|+.++..++........... ..+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-DIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-HHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHH
Confidence 4568999999999999988655 2222222221 5667788888887888999999999999876555555443 347
Q ss_pred hHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC-hHHHHHHHhcCCcchHHHHHHHHHHhccCCC--HHH
Q 043676 258 VPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGL-IRPIVNLLQNAEFDTKKEAAWAISNATSGGT--QEQ 334 (446)
Q Consensus 258 ~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~-i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~--~~~ 334 (446)
++.|+..+.++ ...++..|..+|..++...+... .+ ++.+.....++++.+|..++..+..+..... ...
T Consensus 96 l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~------~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 96 LPPLLKKLGDS-KKFIREAANNALDAIIESCSYSP------KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 88899999888 88899999999999987544111 13 5667778888999999999999999977644 111
Q ss_pred HH-HHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhh
Q 043676 335 IK-HLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAE 376 (446)
Q Consensus 335 ~~-~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~ 376 (446)
.. ...-..+++.+..++.+.++++|..+-.++..+.+..+..
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 11 1011236788899999999999999999999987766554
No 116
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.19 E-value=0.00021 Score=65.30 Aligned_cols=284 Identities=13% Similarity=0.117 Sum_probs=165.2
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcC
Q 043676 9 AGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHG 88 (446)
Q Consensus 9 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 88 (446)
..+++....+++++++.++.++... ...+..+ ..+..|-.+|.++. ...|..|+++|..++...|+....
T Consensus 271 ~wls~k~emV~lE~Ar~v~~~~~~n---v~~~~~~-~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv~v----- 340 (898)
T COG5240 271 SWLSDKFEMVFLEAARAVCALSEEN---VGSQFVD-QTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKVSV----- 340 (898)
T ss_pred HHhcCcchhhhHHHHHHHHHHHHhc---cCHHHHH-HHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCceeee-----
Confidence 3445555778888888887765542 1122232 24667777788888 788888888888888755432211
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh
Q 043676 89 AVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFD 168 (446)
Q Consensus 89 ~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 168 (446)
+=+-+-.++.+.+..+...|+..|..- +..+..+.++. .++.++.-+ +...+.-+..++..|+...|....
T Consensus 341 cN~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv~--~I~sfvhD~----SD~FKiI~ida~rsLsl~Fp~k~~- 411 (898)
T COG5240 341 CNKEVESLISDENRTISTYAITTLLKT--GTEETIDRLVN--LIPSFVHDM----SDGFKIIAIDALRSLSLLFPSKKL- 411 (898)
T ss_pred cChhHHHHhhcccccchHHHHHHHHHc--CchhhHHHHHH--HHHHHHHhh----ccCceEEeHHHHHHHHhhCcHHHH-
Confidence 113344556666666666666655432 33333333332 233333333 233333444444445444433332
Q ss_pred hhhhhHHHHHHhh-cCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCch
Q 043676 169 QVRPALPALAQLV-HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDF 247 (446)
Q Consensus 169 ~~~~~~~~l~~ll-~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~ 247 (446)
..+..|...| +.+.-+...++..++..+....|+... .++..|..++.++. ...-++++|+-|....|.
T Consensus 412 ---s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDce--y~~I~vrIL~iLG~EgP~ 481 (898)
T COG5240 412 ---SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCE--YHQITVRILGILGREGPR 481 (898)
T ss_pred ---HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcc--hhHHHHHHHHHhcccCCC
Confidence 2333444333 345678888888888888877765554 44556666665533 334556666666554433
Q ss_pred hhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhc
Q 043676 248 QTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNAT 327 (446)
Q Consensus 248 ~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 327 (446)
.... ...+..+..-+--+ +.-+|..|+.+|+.++..-.+ .+....+...|-+++.+.|.++|..|..++.++-
T Consensus 482 a~~P---~~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 482 AKTP---GKYVRHIYNRLILE-NNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred CCCc---chHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 2211 12345555554445 678999999999988753111 1111234556778899999999999999999985
Q ss_pred c
Q 043676 328 S 328 (446)
Q Consensus 328 ~ 328 (446)
.
T Consensus 555 ~ 555 (898)
T COG5240 555 L 555 (898)
T ss_pred h
Confidence 3
No 117
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.0015 Score=58.02 Aligned_cols=229 Identities=12% Similarity=0.145 Sum_probs=162.8
Q ss_pred CCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCC-----h----hhHHHHHhcCChHHHHHhhCCCCHHH-
Q 043676 35 NPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGT-----S----ENTNVVIDHGAVPIFVKLLSSPSDDV- 104 (446)
Q Consensus 35 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-----~----~~~~~~~~~~~i~~L~~~L~~~~~~v- 104 (446)
++-.-.+++.++++.|+.+|.+.+ .++....+..+..+...+ . .....+++.++++.|++-++.-++.+
T Consensus 115 PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvk 193 (536)
T KOG2734|consen 115 PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVK 193 (536)
T ss_pred hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcch
Confidence 333446788899999999999999 799999999999988522 2 23556778899999999887643333
Q ss_pred -----HHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc-cccchhHHHHHHHHHHHhhcCCC-CCChhhhhhhHHHH
Q 043676 105 -----REQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN-EHAKLSMLRNATRTLSNFCRGKP-EPPFDQVRPALPAL 177 (446)
Q Consensus 105 -----~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~l 177 (446)
...++..+-|+....+.....+.+.|.+.-|+..+. +..-......+...+.-+..+.. +......-.++..+
T Consensus 194 eea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~l 273 (536)
T KOG2734|consen 194 EEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVL 273 (536)
T ss_pred hhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHH
Confidence 456778888999888888888888888887777553 33445667788888888877763 33333333445555
Q ss_pred HHhhc----CC-----CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCc--
Q 043676 178 AQLVH----SN-----DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDD-- 246 (446)
Q Consensus 178 ~~ll~----~~-----~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~-- 246 (446)
++-+. ++ ..+..++...+|+.+......+ ..+....+++...-+++. ....+..++.+|-....+.+
T Consensus 274 L~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt 351 (536)
T KOG2734|consen 274 LRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-ERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGT 351 (536)
T ss_pred HhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-hhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCch
Confidence 44332 22 3677888889998888776644 457776777766666655 55567889999988888776
Q ss_pred hhhHHHHhcCChHHHHHHhc
Q 043676 247 FQTQCIINHGAVPYLLDMLV 266 (446)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~l~ 266 (446)
+.+..+++..++..+....-
T Consensus 352 ~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 352 PNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHHHHHHhHHHHHHHHh
Confidence 66777777777777766553
No 118
>PF05536 Neurochondrin: Neurochondrin
Probab=98.18 E-value=0.0002 Score=68.21 Aligned_cols=235 Identities=14% Similarity=0.124 Sum_probs=160.7
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChh---hHHHHHhcCChHHHHHhhCC-------CCHHHHHHHHHHHHHh
Q 043676 46 VVPRFVEFLMREDYPQLQYEAAWVLINIASGTSE---NTNVVIDHGAVPIFVKLLSS-------PSDDVREQAVWALGNV 115 (446)
Q Consensus 46 ~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~~~i~~L~~~L~~-------~~~~v~~~a~~~l~~l 115 (446)
.+...+++|+..+ ++-|..++-.+.++...++. .++.+.+.=+.+.+-++|++ +....+..++.+|..+
T Consensus 6 ~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 6 SLEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3667788899888 78899999999999985543 23456677667888899987 3467788899999999
Q ss_pred hCCChHHH--HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHH
Q 043676 116 AGDSPRCR--DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYAC 193 (446)
Q Consensus 116 ~~~~~~~~--~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~ 193 (446)
|.. |+.. ..+. +.||.++..+.+..+..+...++.+|..++..+.........+.++.|.+.+.+ .+...+.++
T Consensus 85 ~~~-~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 85 CRD-PELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred cCC-hhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence 963 3332 2222 358999999965555699999999999999776666677778999999999987 666788888
Q ss_pred HHHHHhccCCcHHHHH---HHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchh-----hHHHHhcCChHHHHHHh
Q 043676 194 WSLSYLADGTNDKIQA---VIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQ-----TQCIINHGAVPYLLDML 265 (446)
Q Consensus 194 ~~l~~l~~~~~~~~~~---~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~-----~~~~~~~~~~~~l~~~l 265 (446)
.++.+++.......-. -.-..+++.+...+.......+...+..|..+....+.. ...-....+...+..++
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 8888877543311100 001144556666666666677788888888887655311 11112233445566666
Q ss_pred ccCchHHHHHHHHHHHHHHh
Q 043676 266 VHNHEEIIKKEISWIISNIT 285 (446)
Q Consensus 266 ~~~~~~~v~~~a~~~l~~l~ 285 (446)
++...+.-|..+....+.+.
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLL 260 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHH
Confidence 66545566666665555554
No 119
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.16 E-value=5.1e-05 Score=64.43 Aligned_cols=189 Identities=16% Similarity=0.119 Sum_probs=119.1
Q ss_pred cCCCHHHHHHHHHHHHHHhcCC-CCCcHHHHHh--cCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcC
Q 043676 12 WSDDNSLQLEATTLSRKLLSFD-RNPPIEKVIQ--SGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHG 88 (446)
Q Consensus 12 ~s~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~--~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 88 (446)
.+.|...+..++..|..++.+. .......+.. ..+++.+...+.+.. ..+...|+.++..++........... ..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~-~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYA-DI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHH-HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence 5688999999999999998864 1122222222 145667777777777 68999999999998873333333332 34
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC-CCCh
Q 043676 89 AVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP-EPPF 167 (446)
Q Consensus 89 ~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~ 167 (446)
+++.|++.+.++...+++.|..+|..++...+.....+ ...+.... .+.++.++..++..+..+....+ ....
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGL-KSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHT-T-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHH-hCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 68999999999999999999999999997655111111 23344444 78899999999999999887765 1222
Q ss_pred hh----hhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHH
Q 043676 168 DQ----VRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQ 208 (446)
Q Consensus 168 ~~----~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~ 208 (446)
.. ...+.+.+..++.+.++++|..+-.++..+....++...
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 21 256788899999999999999999999998766555544
No 120
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.16 E-value=1.4e-05 Score=56.50 Aligned_cols=94 Identities=16% Similarity=0.221 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC
Q 043676 274 KKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC 353 (446)
Q Consensus 274 ~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~ 353 (446)
|..++.+|+.++.+-+.......+ .++++++..+.++++.||..|+.+|.+++.....+...++-+ +++.|.++..+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~--IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNE--IFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHcC
Confidence 566777788776644444444444 589999999999999999999999999998765555555444 78899999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 043676 354 SDPEIVTVCLIGLENILK 371 (446)
Q Consensus 354 ~~~~~~~~~~~~l~~l~~ 371 (446)
.++.|+..| +.|.++++
T Consensus 80 ~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRLLK 96 (97)
T ss_pred CchhHHHHH-HHHHHHhc
Confidence 999998765 67777654
No 121
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.15 E-value=8.6e-06 Score=57.39 Aligned_cols=87 Identities=28% Similarity=0.434 Sum_probs=69.5
Q ss_pred HHHHHHhh-cCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHH
Q 043676 47 VPRFVEFL-MREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDL 125 (446)
Q Consensus 47 ~~~L~~ll-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 125 (446)
+|.|++.+ ++++ +.+|..++++|+.+.. + ..++.|..+++++++.+|..++++|+.+-
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 57889988 6666 9999999999995532 2 34899999999999999999999999873
Q ss_pred HHHcCChHHHHHHhccccchhHHHHHHHHHH
Q 043676 126 VLSQGALIPLLAELNEHAKLSMLRNATRTLS 156 (446)
Q Consensus 126 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~ 156 (446)
....++.+.+.+.++.+..++..+.++|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12267889999966667777888888874
No 122
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.00032 Score=66.11 Aligned_cols=326 Identities=12% Similarity=0.116 Sum_probs=171.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHH
Q 043676 6 ALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVI 85 (446)
Q Consensus 6 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 85 (446)
.+-+.|+++|..+|-..++.|+++-. . ++.+ ..+|.+...|.+.. +-+|+.|..++..+-.... .++
T Consensus 103 a~RkDLQHPNEyiRG~TLRFLckLkE---~----ELle-pl~p~IracleHrh-sYVRrNAilaifsIyk~~~----~L~ 169 (948)
T KOG1058|consen 103 AYRKDLQHPNEYIRGSTLRFLCKLKE---P----ELLE-PLMPSIRACLEHRH-SYVRRNAILAIFSIYKNFE----HLI 169 (948)
T ss_pred HHhhhccCchHhhcchhhhhhhhcCc---H----HHhh-hhHHHHHHHHhCcc-hhhhhhhheeehhHHhhhh----hhc
Confidence 34567889999999999988887421 1 2333 47899999999999 8999999988888776211 111
Q ss_pred hcCChHHHHHhh-CCCCHHHHHHHHHHHHH----------------------------------hhCCChHHHHHHHHcC
Q 043676 86 DHGAVPIFVKLL-SSPSDDVREQAVWALGN----------------------------------VAGDSPRCRDLVLSQG 130 (446)
Q Consensus 86 ~~~~i~~L~~~L-~~~~~~v~~~a~~~l~~----------------------------------l~~~~~~~~~~~~~~~ 130 (446)
..+-+.+-++| ...++..+++|...|.. .|..+|.-+. .
T Consensus 170 -pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~-----~ 243 (948)
T KOG1058|consen 170 -PDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKA-----R 243 (948)
T ss_pred -CChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhh-----H
Confidence 11122222222 22445555554433332 2221121111 1
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcC-CCHhHHHHHHHHHHHhccCCcHHHHH
Q 043676 131 ALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHS-NDEDVLTYACWSLSYLADGTNDKIQA 209 (446)
Q Consensus 131 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~~~~~l~~l~~~~~~~~~~ 209 (446)
.+..+..+| .+.++.++..++.+|..++..+ .........++.++.. +|-.+.--.+.-|..+..... .
T Consensus 244 ~i~~i~~lL-~stssaV~fEaa~tlv~lS~~p-----~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~----~ 313 (948)
T KOG1058|consen 244 YIRCIYNLL-SSTSSAVIFEAAGTLVTLSNDP-----TALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHE----K 313 (948)
T ss_pred HHHHHHHHH-hcCCchhhhhhcceEEEccCCH-----HHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhH----H
Confidence 223333333 2223344444444443333321 0111122222222221 122222222222222221111 1
Q ss_pred HHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCC-chhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCC
Q 043676 210 VIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGD-DFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGN 288 (446)
Q Consensus 210 ~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~ 288 (446)
+++ |++--+++.|.+++-+++..++.....|+... -...-.+++..+...--. .+......|..-..+++.++..-
T Consensus 314 il~-~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~--e~d~~~~yRqlLiktih~cav~F 390 (948)
T KOG1058|consen 314 ILQ-GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE--ESDDNGKYRQLLIKTIHACAVKF 390 (948)
T ss_pred HHH-HHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc--ccccchHHHHHHHHHHHHHhhcC
Confidence 122 66667788889999999999998887776532 221111111111111111 11224567888888998887765
Q ss_pred HHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhccc-CCCHHHHHHHHHHHH
Q 043676 289 REQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL-CSDPEIVTVCLIGLE 367 (446)
Q Consensus 289 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~~~~~l~ 367 (446)
++... .+++.|++.+.+.++......+..+...... -+..+.. .+..|.+-+. -..+++...++|++.
T Consensus 391 p~~aa-----tvV~~ll~fisD~N~~aas~vl~FvrE~iek-~p~Lr~~-----ii~~l~~~~~~irS~ki~rgalwi~G 459 (948)
T KOG1058|consen 391 PEVAA-----TVVSLLLDFISDSNEAAASDVLMFVREAIEK-FPNLRAS-----IIEKLLETFPQIRSSKICRGALWILG 459 (948)
T ss_pred hHHHH-----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHh-CchHHHH-----HHHHHHHhhhhhcccccchhHHHHHH
Confidence 55433 5788999999888877666666666655543 2232222 3455555553 356788889999999
Q ss_pred HHHHhhh
Q 043676 368 NILKVGE 374 (446)
Q Consensus 368 ~l~~~~~ 374 (446)
..+....
T Consensus 460 eYce~~~ 466 (948)
T KOG1058|consen 460 EYCEGLS 466 (948)
T ss_pred HHHhhhH
Confidence 8776544
No 123
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.12 E-value=7.6e-06 Score=57.66 Aligned_cols=86 Identities=34% Similarity=0.453 Sum_probs=69.5
Q ss_pred hHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 4 FPALVAGV-WSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 4 i~~l~~~l-~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
||.|++.| +++++.++..++++|.++-. ...++.|.+++++++ +.+|..|+++|+.+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~i~~------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDED-PMVRRAAARALGRIGD------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSS-HHHHHHHHHHHHCCHH-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-------
Confidence 68899999 78999999999999984311 135999999998888 9999999999998842
Q ss_pred HHHhcCChHHHHHhhCCC-CHHHHHHHHHHHH
Q 043676 83 VVIDHGAVPIFVKLLSSP-SDDVREQAVWALG 113 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~~~-~~~v~~~a~~~l~ 113 (446)
...++.|.+++.++ +..+|..|+.+|+
T Consensus 61 ----~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ----PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23689999988874 5667898888874
No 124
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.0005 Score=60.83 Aligned_cols=239 Identities=16% Similarity=0.106 Sum_probs=170.1
Q ss_pred HHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC---------cHHHHHHHHhCcHHHHHHhc
Q 043676 153 RTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGT---------NDKIQAVIEAGVCPRLVELL 223 (446)
Q Consensus 153 ~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~---------~~~~~~~~~~~~~~~l~~ll 223 (446)
.-+..++..+........-++++.++.+|.+++.++...++..+..+...+ ...+..+++.++++.|++-+
T Consensus 106 Q~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnv 185 (536)
T KOG2734|consen 106 QEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNV 185 (536)
T ss_pred HHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHH
Confidence 334444444433334555688999999999999999999999999988431 13455677889999999988
Q ss_pred CCCCccc------hhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccC-chHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 043676 224 GHPSPSV------LTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHN-HEEIIKKEISWIISNITAGNREQIQAVI 296 (446)
Q Consensus 224 ~~~~~~~------~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 296 (446)
..-+..+ ...++..+-|+....+.......+.|.+..|+.-+... .-...+..|.-+++-+...+.+.+..+-
T Consensus 186 eRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~ 265 (536)
T KOG2734|consen 186 ERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLG 265 (536)
T ss_pred HHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhc
Confidence 7644444 34567888899988888888888889999988865433 2445677777888877776666666666
Q ss_pred HcCChHHHHHHHh---cCC------cchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHH
Q 043676 297 DAGLIRPIVNLLQ---NAE------FDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLE 367 (446)
Q Consensus 297 ~~~~i~~L~~ll~---~~~------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~ 367 (446)
..+++..+++-+. ..+ .+..++...+||.+.. .+.++..+....++....-+++. ....+..++++|.
T Consensus 266 ~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm--~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd 342 (536)
T KOG2734|consen 266 PLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM--APANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLD 342 (536)
T ss_pred CcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc--ChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHH
Confidence 7778888776553 233 3567888889998887 46788888877777777666665 4456777888888
Q ss_pred HHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHh
Q 043676 368 NILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENL 405 (446)
Q Consensus 368 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l 405 (446)
......+. .+++..|.+.+|+..+-.+
T Consensus 343 ~am~g~~g-----------t~~C~kfVe~lGLrtiF~~ 369 (536)
T KOG2734|consen 343 HAMFGPEG-----------TPNCNKFVEILGLRTIFPL 369 (536)
T ss_pred HHHhCCCc-----------hHHHHHHHHHHhHHHHHHH
Confidence 76554332 2357778888888886544
No 125
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.0095 Score=58.52 Aligned_cols=343 Identities=16% Similarity=0.138 Sum_probs=195.5
Q ss_pred HHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhc------CC-CChHHHHHHHHHHHHHcC---CChhhHHHHHhcCC
Q 043676 20 LEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLM------RE-DYPQLQYEAAWVLINIAS---GTSENTNVVIDHGA 89 (446)
Q Consensus 20 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~------~~-~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~ 89 (446)
..|...+..+++..+.+.. .++++.+++.+. .+ +++.-+.-|+++++++++ .....+. .++.-+
T Consensus 390 ~Aa~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~-~mE~fl 463 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS-QMEYFL 463 (1010)
T ss_pred HHHHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH-HHHHHH
Confidence 3455566665554322222 256777777777 22 236777888888888875 1222222 223345
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC---C
Q 043676 90 VPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEP---P 166 (446)
Q Consensus 90 i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~---~ 166 (446)
++.+...++++.--+|..|+|+++.++...-.....+ ..++....+.|..+.+-.++..|+-+|..+..+.+.. .
T Consensus 464 v~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~ 541 (1010)
T KOG1991|consen 464 VNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKV 541 (1010)
T ss_pred HHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhH
Confidence 6677777888889999999999999994321111122 2245666777756778899999999999998886432 2
Q ss_pred hhhhhhhHHHHHHhhcCCCHhHHHHHHHHH-HHhccCCcHHHHHHHHhCcHHHHHHhcCC---CCcc---chhHHHHHHH
Q 043676 167 FDQVRPALPALAQLVHSNDEDVLTYACWSL-SYLADGTNDKIQAVIEAGVCPRLVELLGH---PSPS---VLTPALRTVG 239 (446)
Q Consensus 167 ~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~l~~ll~~---~~~~---~~~~a~~~l~ 239 (446)
.....+.++.+..+.+.-+.+....++..+ +..+..-......+.+ .+...+.+++.. .++. -...|.++|.
T Consensus 542 ~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~ 620 (1010)
T KOG1991|consen 542 SAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILR 620 (1010)
T ss_pred hhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHH
Confidence 234456666677777665555555544443 2233221111111222 455566666663 2222 2233444444
Q ss_pred Hhhc------CCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCc
Q 043676 240 NIVT------GDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEF 313 (446)
Q Consensus 240 ~l~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 313 (446)
.+.. ..+... .-++..+++.+-.++++. -.++-++++..+.+++...++.-..+. |+++.+.+.++....
T Consensus 621 Ti~Til~s~e~~p~vl-~~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~ 696 (1010)
T KOG1991|consen 621 TISTILLSLENHPEVL-KQLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGI 696 (1010)
T ss_pred HHHHHHHHHhccHHHH-HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhH
Confidence 4421 122222 223445667777777777 777888888888887654333222233 478888888887777
Q ss_pred chHHHHHHHHHHhccCCCHHHHHHH-HHcCChHHHHhcccC--CCHHHHHHHHHHHHHHHHhhhh
Q 043676 314 DTKKEAAWAISNATSGGTQEQIKHL-VREGCVKPLCDLLLC--SDPEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 314 ~v~~~a~~aL~~l~~~~~~~~~~~l-~~~~~i~~L~~ll~~--~~~~~~~~~~~~l~~l~~~~~~ 375 (446)
+--....-+|.|....+.+.....- ...-++.....++.+ ....=.+.|++.+..++-.+.+
T Consensus 697 dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg 761 (1010)
T KOG1991|consen 697 DYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKG 761 (1010)
T ss_pred HHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC
Confidence 7778888899998887654332110 001123333334433 2222334566777766654444
No 126
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.0071 Score=59.91 Aligned_cols=260 Identities=12% Similarity=0.087 Sum_probs=159.2
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHH
Q 043676 45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCR 123 (446)
Q Consensus 45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~ 123 (446)
+++..|+..+++.+ ..++..|+..++.++...|. .+.+ .++...+.++.. .++..-..++.+|+.++...--.-
T Consensus 341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~---~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPP---ELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcH---HHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 67888888999999 79999999999999986662 2222 346666665554 345666689999999985432111
Q ss_pred HHHHHcCChHHHHHHhcc-------ccchhHHHHHHHHHHHhhcCCCCCCh-hhhhhhHHHH-HHhhcCCCHhHHHHHHH
Q 043676 124 DLVLSQGALIPLLAELNE-------HAKLSMLRNATRTLSNFCRGKPEPPF-DQVRPALPAL-AQLVHSNDEDVLTYACW 194 (446)
Q Consensus 124 ~~~~~~~~i~~l~~~l~~-------~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~l-~~ll~~~~~~v~~~~~~ 194 (446)
..+. .+++.+++-+.. .....++..|+.+++.+++......+ .....+.+.| ...+-+.+-.+|+.|..
T Consensus 416 s~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 1111 145555555521 22457999999999999988632222 1223333332 23344667888999988
Q ss_pred HHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHH-hccCchHHH
Q 043676 195 SLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDM-LVHNHEEII 273 (446)
Q Consensus 195 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~v 273 (446)
++........+.- .+++ |+...+.-.-..+.++...+..-....+..+..++ +.++.. +.+= +..+
T Consensus 494 AlqE~VGR~~n~p------~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f-----~~L~t~Kv~HW-d~~i 560 (1133)
T KOG1943|consen 494 ALQENVGRQGNFP------HGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVF-----NHLLTKKVCHW-DVKI 560 (1133)
T ss_pred HHHHHhccCCCCC------Cchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHH-----HHHHhcccccc-cHHH
Confidence 8877654322110 1111 22222222233344555555544444555554433 333333 5566 8899
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhcc
Q 043676 274 KKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATS 328 (446)
Q Consensus 274 ~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 328 (446)
|+.++++|.++....++ ....+.++++++...+.+...+..+..+.+.+..
T Consensus 561 relaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 561 RELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred HHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 99999999998664443 2344688889998888888887776666666644
No 127
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.02 E-value=1e-05 Score=50.93 Aligned_cols=55 Identities=24% Similarity=0.547 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHh
Q 043676 271 EIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNA 326 (446)
Q Consensus 271 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 326 (446)
+.+|..|+++|++++...++....+.. .+++.|+.++++.++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999998777776666444 7999999999999999999999999875
No 128
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.0085 Score=60.04 Aligned_cols=238 Identities=13% Similarity=0.061 Sum_probs=148.1
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhhcCCCCC--ChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHH
Q 043676 134 PLLAELNEHAKLSMLRNATRTLSNFCRGKPEP--PFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVI 211 (446)
Q Consensus 134 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~ 211 (446)
.+.....++.+..++..+...|..++...+.. .......+...+.+-+++.+...+...+.++..+....+.....++
T Consensus 657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 44445545567899999999999999884222 2223355666677777777888999999999888866553333344
Q ss_pred HhCcHHHHHHhcCCCCccchhHHHHHHHHhhc-------CCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHH
Q 043676 212 EAGVCPRLVELLGHPSPSVLTPALRTVGNIVT-------GDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNI 284 (446)
Q Consensus 212 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~-------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l 284 (446)
...+.+.++. ++..+...|..|..+|..++. +++. ....+ ..++..+...+-.. ...+....+.++..+
T Consensus 737 ~k~I~EvIL~-~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~l-nefl~~Isagl~gd-~~~~~as~Ivai~~i 812 (1176)
T KOG1248|consen 737 PKLIPEVILS-LKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAIL-NEFLSIISAGLVGD-STRVVASDIVAITHI 812 (1176)
T ss_pred HHHHHHHHHh-cccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHH-HHHHHHHHhhhccc-HHHHHHHHHHHHHHH
Confidence 4334444444 488888889999888888873 1111 01111 11333333333333 333333334445544
Q ss_pred hcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHH
Q 043676 285 TAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLI 364 (446)
Q Consensus 285 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~ 364 (446)
..........-.-.+++..+.-.+.++.+++++.|+..+.-++............ ..+++.+..+.++..-.++.++-.
T Consensus 813 l~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~Kvr~ 891 (1176)
T KOG1248|consen 813 LQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKKVRL 891 (1176)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3321111111111245666666778889999999999999998875555544433 237888888888888899999999
Q ss_pred HHHHHHHhhhhh
Q 043676 365 GLENILKVGEAE 376 (446)
Q Consensus 365 ~l~~l~~~~~~~ 376 (446)
.|..+++...-.
T Consensus 892 LlekLirkfg~~ 903 (1176)
T KOG1248|consen 892 LLEKLIRKFGAE 903 (1176)
T ss_pred HHHHHHHHhCHH
Confidence 999888765443
No 129
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.0012 Score=62.78 Aligned_cols=141 Identities=8% Similarity=0.111 Sum_probs=92.1
Q ss_pred hhhHHHHHHhhcCC-CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhh
Q 043676 171 RPALPALAQLVHSN-DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQT 249 (446)
Q Consensus 171 ~~~~~~l~~ll~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~ 249 (446)
...++.|..+|+.+ .-+.......++..+....++... .++..|...+.++ ....-+.+++.-+....|...
T Consensus 390 ~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~a~ 462 (865)
T KOG1078|consen 390 TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPKAP 462 (865)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc--cchHHHHHHHHHHhccCCCCC
Confidence 34556666666643 567777788888777765554444 3445555555443 345556666666665443211
Q ss_pred HHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhc
Q 043676 250 QCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNAT 327 (446)
Q Consensus 250 ~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 327 (446)
.....+..+.....-+ +..+|.+|+.++.++..+++... ..+.-.+.+++.+.+.++|..|..+|.++-
T Consensus 463 ---~Pskyir~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l~-----~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 463 ---NPSKYIRFIYNRVILE-NAIVRAAAVSALAKFGAQDVVLL-----PSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred ---CcchhhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 1234556666665556 77999999999999975443322 245566778888999999999999999886
No 130
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.0047 Score=60.52 Aligned_cols=348 Identities=14% Similarity=0.110 Sum_probs=189.9
Q ss_pred CHHHHHHHHHHHHHHhcCC-CCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHH
Q 043676 15 DNSLQLEATTLSRKLLSFD-RNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIF 93 (446)
Q Consensus 15 ~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 93 (446)
++....-|++.+..+++.- +...-+...+.=+++.+...++++- --+|.+|+|+++.++..+- ...-.-..++...
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~df--~d~~~l~~ale~t 507 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSIDF--KDPNNLSEALELT 507 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhccC--CChHHHHHHHHHH
Confidence 4666667777777776532 1333344445556777777888888 7999999999999995222 1111122345666
Q ss_pred HHhhC-CCCHHHHHHHHHHHHHhhCCChHHHHHHHH--cCChHHHHHHhccccchhHHHHHHHHH-HHhhcCCCCCChhh
Q 043676 94 VKLLS-SPSDDVREQAVWALGNVAGDSPRCRDLVLS--QGALIPLLAELNEHAKLSMLRNATRTL-SNFCRGKPEPPFDQ 169 (446)
Q Consensus 94 ~~~L~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~i~~l~~~l~~~~~~~~~~~a~~~L-~~l~~~~~~~~~~~ 169 (446)
.+.|. +.+-.|+..|+.+|..+.++.+.....+.. .+.+..++.+. +..+.+....++..+ ..+++.-..-....
T Consensus 508 ~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~-ne~End~Lt~vme~iV~~fseElsPfA~eL 586 (1010)
T KOG1991|consen 508 HNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLS-NEVENDDLTNVMEKIVCKFSEELSPFAVEL 586 (1010)
T ss_pred HHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHHhhchhHHHH
Confidence 66666 677889999999999888766644333322 11334444454 333333333333332 23333322222233
Q ss_pred hhhhHHHHHHhhcC---C---CHhHHHHHHHHHHHhc------cCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHH
Q 043676 170 VRPALPALAQLVHS---N---DEDVLTYACWSLSYLA------DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRT 237 (446)
Q Consensus 170 ~~~~~~~l~~ll~~---~---~~~v~~~~~~~l~~l~------~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~ 237 (446)
.........+++.+ . +.+-...|.++|..+. ...++..+ -.+.-+++.+-..+++.-.++-+.++..
T Consensus 587 ~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l~vi~~iL~~~i~dfyeE~~ei 665 (1010)
T KOG1991|consen 587 CQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVLPVIGFILKNDITDFYEELLEI 665 (1010)
T ss_pred HHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34555556666663 1 2333344444444433 12222221 2333556666666777777778888888
Q ss_pred HHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHH-HHcCChHHHHHHHhcC--Cc
Q 043676 238 VGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAV-IDAGLIRPIVNLLQNA--EF 313 (446)
Q Consensus 238 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~-~~~~~i~~L~~ll~~~--~~ 313 (446)
...++...++..-.+. ++++.+.+.+++. ....-....-+|.|+.. +.+.....- .-.-++.....++.+. ..
T Consensus 666 ~~~~t~~~~~Isp~mW--~ll~li~e~~~~~-~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D 742 (1010)
T KOG1991|consen 666 VSSLTFLSKEISPIMW--GLLELILEVFQDD-GIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGED 742 (1010)
T ss_pred HhhhhhhhcccCHHHH--HHHHHHHHHHhhh-hHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCch
Confidence 8888766655444444 4678888888887 67777888889998875 333211110 0011233333444442 22
Q ss_pred chHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhc----cc--CCCHHHHHHHHHHHHHHHHhhhhh
Q 043676 314 DTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDL----LL--CSDPEIVTVCLIGLENILKVGEAE 376 (446)
Q Consensus 314 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l----l~--~~~~~~~~~~~~~l~~l~~~~~~~ 376 (446)
.=...|+..+.-+...... ...+ .+|.++++ +. ..+...+..+++...+.+...+..
T Consensus 743 ~d~~~a~kLle~iiL~~kg-~~dq-----~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~l 805 (1010)
T KOG1991|consen 743 SDCESACKLLEVIILNCKG-LLDQ-----YIPLFLELALSRLTREVETSELRVMLLEVVINALYYNPKL 805 (1010)
T ss_pred HHHHHHHHHHHHHHHHhcC-cHhh-----HhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcHH
Confidence 3344466666655443221 1111 34443333 22 245567777777766666554443
No 131
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.94 E-value=8.4e-05 Score=52.39 Aligned_cols=67 Identities=16% Similarity=0.381 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 043676 62 LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLL--SSPSDDVREQAVWALGNVAGDSPRCRDLVLS 128 (446)
Q Consensus 62 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L--~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 128 (446)
+|...+++++|++..++...+.+.+.|+++.++... .+.+|-++++|++++.|++.++++++..+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 466788999999999999999999999999999864 4478999999999999999999998877654
No 132
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.94 E-value=0.0052 Score=59.69 Aligned_cols=168 Identities=18% Similarity=0.198 Sum_probs=131.2
Q ss_pred hcCCCChHHHHHHHH-HHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCCh
Q 043676 54 LMREDYPQLQYEAAW-VLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL 132 (446)
Q Consensus 54 l~~~~~~~~~~~a~~-~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i 132 (446)
+.+.+ +..|..|+. ++..++.+++ .. ...+-+++...+.+.++++..-.=|.+++...|.. .+. ++
T Consensus 28 l~s~n-~~~kidAmK~iIa~M~~G~d-ms------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lL---av 94 (757)
T COG5096 28 LESSN-DYKKIDAMKKIIAQMSLGED-MS------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALL---AV 94 (757)
T ss_pred ccccC-hHHHHHHHHHHHHHHhcCCC-hH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHH---HH
Confidence 66666 677777875 6677776443 22 23466666666889999999888888888887742 222 46
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHH
Q 043676 133 IPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIE 212 (446)
Q Consensus 133 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~ 212 (446)
..+.+-+ +++++.+|..|+++++.+=. ......+++.+.+++.++++.||..|+-++..+-+.+++. ..+
T Consensus 95 Nti~kDl-~d~N~~iR~~AlR~ls~l~~------~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l---~~~ 164 (757)
T COG5096 95 NTIQKDL-QDPNEEIRGFALRTLSLLRV------KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL---YHE 164 (757)
T ss_pred HHHHhhc-cCCCHHHHHHHHHHHHhcCh------HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh---hhc
Confidence 7788888 88999999999999987633 3456778899999999999999999999999998776643 445
Q ss_pred hCcHHHHHHhcCCCCccchhHHHHHHHHhhcC
Q 043676 213 AGVCPRLVELLGHPSPSVLTPALRTVGNIVTG 244 (446)
Q Consensus 213 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~ 244 (446)
.|.+..+..++.+.++.+..+|+.++..+-..
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 67889999999999999999999999887653
No 133
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00051 Score=64.70 Aligned_cols=136 Identities=16% Similarity=0.160 Sum_probs=96.0
Q ss_pred hhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh-cCCCCccchhHHHHHHHHhhcCCchhhH
Q 043676 172 PALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVEL-LGHPSPSVLTPALRTVGNIVTGDDFQTQ 250 (446)
Q Consensus 172 ~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~l-l~~~~~~~~~~a~~~l~~l~~~~~~~~~ 250 (446)
++=+.+-+++.+.|+-+|.....++.---.... ..+++..|++. +++.+.+||+.|..+|+-++..+++.
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~-- 589 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ-- 589 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh--
Confidence 445667788888888888877766543221111 11556667776 66788999999999999998877653
Q ss_pred HHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCC
Q 043676 251 CIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGG 330 (446)
Q Consensus 251 ~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 330 (446)
.+..+++|....++.||..++.+|+-.|+++... ..+..|-.+..+...-||+.|+.++.-+....
T Consensus 590 -------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 590 -------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred -------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence 4667788877769999999999999998854221 13444445555666778999998888775543
No 134
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.84 E-value=0.035 Score=54.22 Aligned_cols=225 Identities=13% Similarity=0.147 Sum_probs=152.8
Q ss_pred CCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHH
Q 043676 99 SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALA 178 (446)
Q Consensus 99 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~ 178 (446)
+..|.+.-.+.+++...+...+....... ..+...++.+..+..+.++..++.+++..+. +........+++..|.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L~ 536 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDGLL 536 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHHHH
Confidence 35677766889999877754332222211 1345566666566777888899998888883 3444455678889999
Q ss_pred HhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCccchhHHHHHHHHhhcCCchhhHHHHhcC
Q 043676 179 QLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLTPALRTVGNIVTGDDFQTQCIINHG 256 (446)
Q Consensus 179 ~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~ 256 (446)
++....+.++......+|+..+..+++... ..+..+.|.++.+... +++.+...+-.++..++... .+.. -....
T Consensus 537 qlas~~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g-~m~e~ 613 (1005)
T KOG2274|consen 537 QLASKSSDEVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYG-PMQER 613 (1005)
T ss_pred HHcccccHHHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-Hhhc-chHHH
Confidence 999988999999999999999998886554 5666788877766543 66666666666666655411 1111 11234
Q ss_pred ChHHHHHHhccCch----HHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCCcchHHHHHHHHHHhccCCC
Q 043676 257 AVPYLLDMLVHNHE----EIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQ-NAEFDTKKEAAWAISNATSGGT 331 (446)
Q Consensus 257 ~~~~l~~~l~~~~~----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~ 331 (446)
.+|.+++.+..+ . ......++..|.-+.+..+.-.....-.-++|++.++.- ++|..+.+.+-.+|..+...+.
T Consensus 614 ~iPslisil~~~-~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 614 LIPSLISVLQLN-ADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHHHHHHcCc-ccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 789999999876 4 566677788888777743333333333357788887664 4577889999999999887643
No 135
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.00016 Score=64.58 Aligned_cols=300 Identities=14% Similarity=0.129 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-----CChHHHHHHHHcCChHHH
Q 043676 61 QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAG-----DSPRCRDLVLSQGALIPL 135 (446)
Q Consensus 61 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~-----~~~~~~~~~~~~~~i~~l 135 (446)
.+|.++..+|.-++..-.-.+..++ .....+...+.+..+.++..+..++..+-. ..|+..+.-...+.+..+
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~--~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~ 347 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLM--ELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM 347 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence 4556666666665552222222222 233555556677889999999988877752 222221111122222111
Q ss_pred H------HHhccccchhHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHH
Q 043676 136 L------AELNEHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQ 208 (446)
Q Consensus 136 ~------~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~ 208 (446)
. ....++..+..+...|-++.++.... ..-..-.....+..+..+-.+.+.-++..++++++-+.-+..-+..
T Consensus 348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d 427 (728)
T KOG4535|consen 348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQD 427 (728)
T ss_pred HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhh
Confidence 1 12223345667788888888886654 1111101111111122222233455777788888777766555554
Q ss_pred HHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhc----CCch---hhHHHHhcCChHHHHHHh--ccCchHHHHHHHHH
Q 043676 209 AVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT----GDDF---QTQCIINHGAVPYLLDML--VHNHEEIIKKEISW 279 (446)
Q Consensus 209 ~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~----~~~~---~~~~~~~~~~~~~l~~~l--~~~~~~~v~~~a~~ 279 (446)
...-......+...+.+..-..|..++|+++|++. +.|. ....+.. -.+..++... .+..+.+|+..|..
T Consensus 428 ~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navr 506 (728)
T KOG4535|consen 428 VIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVR 506 (728)
T ss_pred HHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 44455667777777877788899999999999974 2222 2222221 1222333222 22226789999999
Q ss_pred HHHHHhcCCHHHHHHHHHc-------CChHHHHH-HHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcc
Q 043676 280 IISNITAGNREQIQAVIDA-------GLIRPIVN-LLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLL 351 (446)
Q Consensus 280 ~l~~l~~~~~~~~~~~~~~-------~~i~~L~~-ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll 351 (446)
+|+|+..- .+.+.+. +-+..+.. ..-.+...|+-+++.+++|+.++..-.....=....+++.|..++
T Consensus 507 aLgnllQv----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv 582 (728)
T KOG4535|consen 507 ALGNLLQF----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLV 582 (728)
T ss_pred HHhhHHHH----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHH
Confidence 99998641 1212221 11111211 112246789999999999998853210000000012355565555
Q ss_pred c-CCCHHHHHHHHHHHH
Q 043676 352 L-CSDPEIVTVCLIGLE 367 (446)
Q Consensus 352 ~-~~~~~~~~~~~~~l~ 367 (446)
. ..+-+++..|..+|.
T Consensus 583 ~~~~NFKVRi~AA~aL~ 599 (728)
T KOG4535|consen 583 TSCKNFKVRIRAAAALS 599 (728)
T ss_pred HHhccceEeehhhhhhc
Confidence 3 344555555555443
No 136
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.83 E-value=0.0071 Score=58.72 Aligned_cols=305 Identities=12% Similarity=0.077 Sum_probs=183.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHH
Q 043676 13 SDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPI 92 (446)
Q Consensus 13 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 92 (446)
++-|.+...+.+++...++.. .....+.. -++...+..+..+..+-++..|+++++-.+. ++.... ...++++.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~-~~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSST--VINPQLLQ-HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLS-LQPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhh--ccchhHHH-HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccc-cchHHHHH
Confidence 566777778888888776652 11111221 2345555666555547788888888887774 222222 12467888
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc-cccchhHHHHHHHHHHHhhcCCCCCChhhhh
Q 043676 93 FVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN-EHAKLSMLRNATRTLSNFCRGKPEPPFDQVR 171 (446)
Q Consensus 93 L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 171 (446)
|.++....+.++....+.+|+..+..+|+... ..+..+.|.++.++. .+.++.+...+-.++..++... ...-....
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~e 612 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQE 612 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchHH
Confidence 88888888899999999999999988887543 345556666666654 4457777777777777777643 11222346
Q ss_pred hhHHHHHHhhcCCC----HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHHhhcCCc
Q 043676 172 PALPALAQLVHSND----EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGNIVTGDD 246 (446)
Q Consensus 172 ~~~~~l~~ll~~~~----~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~ 246 (446)
..+|.+++.+..++ .....-++..|..+.++.+.-.....-.-++|.+.++.-+ ++......+..|+..+.....
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 78999999998765 6666777777777776544333333334677888887665 566777888899988887655
Q ss_pred hhhHHHHhcCC------hHHHHHHhccCchHHHHHHHHHHHHHHh----cCCHHHHHHHHHcCChHHHH-HHHhcCCcch
Q 043676 247 FQTQCIINHGA------VPYLLDMLVHNHEEIIKKEISWIISNIT----AGNREQIQAVIDAGLIRPIV-NLLQNAEFDT 315 (446)
Q Consensus 247 ~~~~~~~~~~~------~~~l~~~l~~~~~~~v~~~a~~~l~~l~----~~~~~~~~~~~~~~~i~~L~-~ll~~~~~~v 315 (446)
++...--..++ ++.+..+|.. +.-..++..++.+. .+-......-++ .++...+ ++-+.+...+
T Consensus 693 eq~~t~~~e~g~~~~yImqV~sqLLdp----~~sds~a~~VG~lV~tLit~a~~el~~n~d-~IL~Avisrmq~ae~lsv 767 (1005)
T KOG2274|consen 693 EQLLTWHDEPGHNLWYIMQVLSQLLDP----ETSDSAAAFVGPLVLTLITHASSELGPNLD-QILRAVISRLQQAETLSV 767 (1005)
T ss_pred HHHHhhccCCCccHHHHHHHHHHHcCC----ccchhHHHHHhHHHHHHHHHHHHHhchhHH-HHHHHHHHHHHHhhhHHH
Confidence 44332222222 2333333432 22233333333332 221111111111 1233333 3444456777
Q ss_pred HHHHHHHHHHhccCC
Q 043676 316 KKEAAWAISNATSGG 330 (446)
Q Consensus 316 ~~~a~~aL~~l~~~~ 330 (446)
.+..+.+++++....
T Consensus 768 iQsLi~VfahL~~t~ 782 (1005)
T KOG2274|consen 768 IQSLIMVFAHLVHTD 782 (1005)
T ss_pred HHHHHHHHHHHhhCC
Confidence 788888888887653
No 137
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.0011 Score=63.10 Aligned_cols=140 Identities=13% Similarity=0.036 Sum_probs=84.9
Q ss_pred CcHHHHHHhcCC-CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHH
Q 043676 214 GVCPRLVELLGH-PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQI 292 (446)
Q Consensus 214 ~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~ 292 (446)
+.+..|..+|+. +..+.+.....++..+...+++... .++..|...+.+. +...-+.+.|+-+....|..
T Consensus 391 ~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc---e~~~i~~rILhlLG~EgP~a- 461 (865)
T KOG1078|consen 391 VMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC---EFTQIAVRILHLLGKEGPKA- 461 (865)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc---cchHHHHHHHHHHhccCCCC-
Confidence 344555555554 3445566667777766665555443 2455566666554 44555666666665421110
Q ss_pred HHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHH
Q 043676 293 QAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENIL 370 (446)
Q Consensus 293 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~ 370 (446)
......+..+.+.+.-.+..+|..|..+|.++... ++... ..+.-.|.+++.+.|.+++..|-..+..+-
T Consensus 462 --~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~-~~~l~-----~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 462 --PNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQ-DVVLL-----PSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred --CCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcC-CCCcc-----ccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 00112344444444446788999999999999843 22222 224566788999999999999998888866
No 138
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.80 E-value=0.00067 Score=47.96 Aligned_cols=94 Identities=13% Similarity=0.149 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHH
Q 043676 315 TKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVE 394 (446)
Q Consensus 315 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 394 (446)
.|+.++.+|..++..-......++- .++++++..+.++++.+|..|+++|.++.+...... ...|
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~--~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~------------l~~f- 66 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLD--EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI------------LPYF- 66 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH------------HHHH-
Confidence 3567778888776654444333333 379999999999999999999999999998766542 2222
Q ss_pred HhChHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043676 395 EAGGLEKIENLQSHDNNEIHEKSVKIFKTYW 425 (446)
Q Consensus 395 ~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 425 (446)
...++.|.++..+++++|+..| ..+.+++
T Consensus 67 -~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 67 -NEIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred -HHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 3447788899999999987666 5666654
No 139
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.78 E-value=0.014 Score=54.42 Aligned_cols=190 Identities=16% Similarity=0.166 Sum_probs=123.3
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhh-cCCCH----hHHHHHHHHHHHhccCCcH
Q 043676 131 ALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLV-HSNDE----DVLTYACWSLSYLADGTND 205 (446)
Q Consensus 131 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll-~~~~~----~v~~~~~~~l~~l~~~~~~ 205 (446)
.+..++.+.....++..+..++.+++.+...-+... ....++..+..-+ ...+. ...+...|+...+.-....
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~ 267 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP 267 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc
Confidence 466777777666678888899999988877642222 3445555555544 22333 3344444555444433332
Q ss_pred HHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCch--------hhHHHHhcC----ChHHHHHHhccCchHHH
Q 043676 206 KIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDF--------QTQCIINHG----AVPYLLDMLVHNHEEII 273 (446)
Q Consensus 206 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~--------~~~~~~~~~----~~~~l~~~l~~~~~~~v 273 (446)
... .+++.++.++.+ +.+...++..++-+....+. ..+.+.+.. ++|.+++..+.. +...
T Consensus 268 ~~~-----~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~ 339 (415)
T PF12460_consen 268 LAT-----ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEI 339 (415)
T ss_pred hHH-----HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-Chhh
Confidence 332 456678888876 66778888888888765222 222233322 456666666666 5558
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCC
Q 043676 274 KKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGG 330 (446)
Q Consensus 274 ~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 330 (446)
|.....+|+.+..+-|..+-.---..++|.+++-+...+.+++..++.+|..+....
T Consensus 340 k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 340 KSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 888889999998865543322112358999999999899999999999999998764
No 140
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.78 E-value=4.6e-05 Score=47.91 Aligned_cols=55 Identities=31% Similarity=0.458 Sum_probs=47.9
Q ss_pred HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHh
Q 043676 186 EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241 (446)
Q Consensus 186 ~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l 241 (446)
+.+|..++++|++++...+..... ....+++.|..+|+++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578999999999999888877665 4448999999999999999999999999875
No 141
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.053 Score=54.10 Aligned_cols=341 Identities=14% Similarity=0.127 Sum_probs=187.2
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
.+..|...+++.|..++-.|++.+..+++..+ ..+++ .++...++++...+.+..-.-|+-+|+.++...--.-.
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp----~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP----PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccCc----HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 46677888889999999999999999998752 12222 34555566555444356666888899999873211111
Q ss_pred HHHhcCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhCCChHH-HHHHHHcCChHHHHHHhccccchhHHHHHHH
Q 043676 83 VVIDHGAVPIFVKLLSS--------PSDDVREQAVWALGNVAGDSPRC-RDLVLSQGALIPLLAELNEHAKLSMLRNATR 153 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~~--------~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~ 153 (446)
.+ ..+++.+++.+.- ....+|..|+.++|.++...... -+-+.. .....++..-.-+.+..+++.|..
T Consensus 417 ~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 417 LL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHHHHH
Confidence 11 1345666665542 34679999999999998543321 011111 112222222125677889999999
Q ss_pred HHHHhhcCCCCCChhhhhhhHHHHHHhhcCCC---HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh-cCCCCcc
Q 043676 154 TLSNFCRGKPEPPFDQVRPALPALAQLVHSND---EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVEL-LGHPSPS 229 (446)
Q Consensus 154 ~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~---~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~l-l~~~~~~ 229 (446)
++-......++. ..+++ ++.+.| -..+.++-..++.-....+.... .++..++.- +.+=+..
T Consensus 494 AlqE~VGR~~n~-----p~Gi~----Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~-----~~f~~L~t~Kv~HWd~~ 559 (1133)
T KOG1943|consen 494 ALQENVGRQGNF-----PHGIS----LISTIDYFSVTNRSNCYLDLCVSIAEFSGYRE-----PVFNHLLTKKVCHWDVK 559 (1133)
T ss_pred HHHHHhccCCCC-----CCchh----hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHH-----HHHHHHHhcccccccHH
Confidence 988776653221 11122 112111 12222222222221122222222 222223222 4555778
Q ss_pred chhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHH---HHHHHHH---cC---C
Q 043676 230 VLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNRE---QIQAVID---AG---L 300 (446)
Q Consensus 230 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~---~~~~~~~---~~---~ 300 (446)
+++.++++|.+|+...++ ......+++++....+. +...+..+..+.+.++.+... ....+.+ ++ +
T Consensus 560 irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~-~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~i 634 (1133)
T KOG1943|consen 560 IRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSK-DASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSI 634 (1133)
T ss_pred HHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCC-ChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhh
Confidence 999999999999876654 33456788888888777 777777766666666542111 1111111 12 2
Q ss_pred hHHHHHHH-hcC-CcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHh
Q 043676 301 IRPIVNLL-QNA-EFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKV 372 (446)
Q Consensus 301 i~~L~~ll-~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~ 372 (446)
++.+.... ..+ ..-++...+..+.++... .......+...+.-..+.+.+..++ .++..+.+++..++.-
T Consensus 635 i~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s-~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~ 706 (1133)
T KOG1943|consen 635 IPPICDRYFYRGQGTLMRQATLKFIEQLSLS-KDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVST 706 (1133)
T ss_pred ccHHHHHHhccchHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHH
Confidence 33333322 222 234556666677777654 2333333333344445555554444 7788888888877653
No 142
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.77 E-value=0.0041 Score=51.54 Aligned_cols=255 Identities=17% Similarity=0.223 Sum_probs=149.8
Q ss_pred HHHHHhhcCCC-ChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHH
Q 043676 48 PRFVEFLMRED-YPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126 (446)
Q Consensus 48 ~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 126 (446)
..+.+.|.... ...-+..|+..|.++.. + +.+..+.+...+.+...+...+.+|+...
T Consensus 6 ~~i~~~L~~~s~~l~~r~rALf~Lr~l~~--~---------~~i~~i~ka~~d~s~llkhe~ay~LgQ~~---------- 64 (289)
T KOG0567|consen 6 ETIGNILVNKSQPLQNRFRALFNLRNLLG--P---------AAIKAITKAFIDDSALLKHELAYVLGQMQ---------- 64 (289)
T ss_pred HHHHHHHcCccHHHHHHHHHHHhhhccCC--h---------HHHHHHHHhcccchhhhccchhhhhhhhc----------
Confidence 33444444422 12445566666666655 1 22556666666655566666666766655
Q ss_pred HHcCChHHHHHHhccc-cchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcH
Q 043676 127 LSQGALIPLLAELNEH-AKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTND 205 (446)
Q Consensus 127 ~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~ 205 (446)
....++.++..+... ..+-++..+..+|..+. . ....+.+.++.+++-..+++.+..++..+-.....
T Consensus 65 -~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~---------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~ 133 (289)
T KOG0567|consen 65 -DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D---------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDII 133 (289)
T ss_pred -cchhhHHHHHHhcccccchHHHHHHHHHHHhhc-c---------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence 223567777777432 34556778888888776 2 23456667777666677777766666655422110
Q ss_pred HH----HHH--------HHhCcHHHHHHhcCC-CCcc-chhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchH
Q 043676 206 KI----QAV--------IEAGVCPRLVELLGH-PSPS-VLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEE 271 (446)
Q Consensus 206 ~~----~~~--------~~~~~~~~l~~ll~~-~~~~-~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 271 (446)
.. ..+ ...+-+..+-..+.+ +.+. -|..|.+.|.|+-. ...+..+.+-+..+ +.
T Consensus 134 ~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~-----------EeaI~al~~~l~~~-Sa 201 (289)
T KOG0567|consen 134 DKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT-----------EEAINALIDGLADD-SA 201 (289)
T ss_pred ccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc-----------HHHHHHHHHhcccc-hH
Confidence 00 000 000112222222222 1111 12334444443322 11345566777777 88
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHh
Q 043676 272 IIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN--AEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCD 349 (446)
Q Consensus 272 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ 349 (446)
-.|.+++++++.+-+ +. .++.|.+.|.+ +++.+|..|+.||+.++. ++ +++.|.+
T Consensus 202 lfrhEvAfVfGQl~s--~~---------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~---e~---------~~~vL~e 258 (289)
T KOG0567|consen 202 LFRHEVAFVFGQLQS--PA---------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD---ED---------CVEVLKE 258 (289)
T ss_pred HHHHHHHHHHhhccc--hh---------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC---HH---------HHHHHHH
Confidence 999999999999833 32 57777777765 478999999999999974 33 4666788
Q ss_pred cccCCCHHHHHHHHHHHHHH
Q 043676 350 LLLCSDPEIVTVCLIGLENI 369 (446)
Q Consensus 350 ll~~~~~~~~~~~~~~l~~l 369 (446)
.+.++++-+++.|.-+|..+
T Consensus 259 ~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 259 YLGDEERVVRESCEVALDML 278 (289)
T ss_pred HcCCcHHHHHHHHHHHHHHH
Confidence 88888888888888777653
No 143
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.0032 Score=56.64 Aligned_cols=356 Identities=15% Similarity=0.104 Sum_probs=176.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCC---hhhHHHHHhc---
Q 043676 14 DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGT---SENTNVVIDH--- 87 (446)
Q Consensus 14 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~--- 87 (446)
..+.+.-+.+++|+++.+..+.+..+.-.-..++..+-.++++.+ +.++..++..++.+...+ |+....+-..
T Consensus 119 ~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d-~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~ 197 (728)
T KOG4535|consen 119 SSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKD-VNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSS 197 (728)
T ss_pred cCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCC-CChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCcc
Confidence 346677788999999988754444444334456677778888998 899999999888887632 2222211000
Q ss_pred -----------------CChHHHHHh--------------------------------------hCC--CCHHHHHHHHH
Q 043676 88 -----------------GAVPIFVKL--------------------------------------LSS--PSDDVREQAVW 110 (446)
Q Consensus 88 -----------------~~i~~L~~~--------------------------------------L~~--~~~~v~~~a~~ 110 (446)
..-+.+.+. +.. ....+|-.|+.
T Consensus 198 ~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~q 277 (728)
T KOG4535|consen 198 SNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQ 277 (728)
T ss_pred ccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHH
Confidence 000011110 000 01233444444
Q ss_pred HHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC-----CCCCChhhh-hhhHHHHHH-----
Q 043676 111 ALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG-----KPEPPFDQV-RPALPALAQ----- 179 (446)
Q Consensus 111 ~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~~-~~~~~~l~~----- 179 (446)
+|.-++..-.-.+....+ ....+...+ .+..+.++..+..++..+-.. .|....... .+.+-.+.-
T Consensus 278 vl~~~a~~~~~~~~~~~~--l~RvI~~~~-~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~ 354 (728)
T KOG4535|consen 278 VLTLLARYFSMTQAYLME--LGRVICKCM-GEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLP 354 (728)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHccC-CCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCCh
Confidence 444443221111111111 111112222 455778888888877766432 222211111 121111110
Q ss_pred -h-hcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCC
Q 043676 180 -L-VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGA 257 (446)
Q Consensus 180 -l-l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~ 257 (446)
. -.+..+..+...+.++.++....-.....-.+.-.+..+.-.-++.+.-++..|.+.++.+.-+.........-...
T Consensus 355 ~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~a 434 (728)
T KOG4535|consen 355 RALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADA 434 (728)
T ss_pred hhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHH
Confidence 1 11223456666777777765321110000000000011111112233346677888887777665544444445556
Q ss_pred hHHHHHHhccCchHHHHHHHHHHHHHHhc----C--CHHHHHHHHHcCChHHHHHHHhc---CCcchHHHHHHHHHHhcc
Q 043676 258 VPYLLDMLVHNHEEIIKKEISWIISNITA----G--NREQIQAVIDAGLIRPIVNLLQN---AEFDTKKEAAWAISNATS 328 (446)
Q Consensus 258 ~~~l~~~l~~~~~~~v~~~a~~~l~~l~~----~--~~~~~~~~~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~~l~~ 328 (446)
...+...+.+. ....|..++|+++|++. + ++.....=+..-.+..++..... ..++|+.++..+|+|+.+
T Consensus 435 a~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ 513 (728)
T KOG4535|consen 435 ANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQ 513 (728)
T ss_pred HHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence 67777778777 78899999999999975 2 21111111111123334433322 357899999999999876
Q ss_pred CCCHH--HHHHHHHcCChHHHHh-cccCCCHHHHHHHHHHHHHHHHhhh
Q 043676 329 GGTQE--QIKHLVREGCVKPLCD-LLLCSDPEIVTVCLIGLENILKVGE 374 (446)
Q Consensus 329 ~~~~~--~~~~l~~~~~i~~L~~-ll~~~~~~~~~~~~~~l~~l~~~~~ 374 (446)
.-.+- ........+.+..+.. ..-...-+++=+++.++.|+|+...
T Consensus 514 vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a 562 (728)
T KOG4535|consen 514 FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPA 562 (728)
T ss_pred HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcc
Confidence 31100 0001111112222222 1223455788889999999987643
No 144
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.70 E-value=0.0092 Score=56.11 Aligned_cols=297 Identities=12% Similarity=0.111 Sum_probs=154.2
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHH
Q 043676 48 PRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVL 127 (446)
Q Consensus 48 ~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 127 (446)
..++...+ ++ +..+..|+..+......-|+..+. ++..++.+..+.+..||..|+..|..+|.++++....+
T Consensus 26 ~~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv- 97 (556)
T PF05918_consen 26 KEILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV- 97 (556)
T ss_dssp HHHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-
T ss_pred HHHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-
Confidence 34444444 45 789999999999999978887665 47899999999999999999999999998877655554
Q ss_pred HcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc---CCCHhHHHHHHHHHHHhcc-CC
Q 043676 128 SQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH---SNDEDVLTYACWSLSYLAD-GT 203 (446)
Q Consensus 128 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~---~~~~~v~~~~~~~l~~l~~-~~ 203 (446)
...|+++| ...++.-...+-.+|..+...++ .+.+..+...+. ++++.+|+.++..|..=.. -.
T Consensus 98 ----aDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 98 ----ADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp ----HHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred ----HHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence 45788888 56666666666666666655432 334444554444 5688899999988854331 11
Q ss_pred cHHHH--HHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcC----CchhhHHHHhcCChHHHHHHhc-----cCchHH
Q 043676 204 NDKIQ--AVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG----DDFQTQCIINHGAVPYLLDMLV-----HNHEEI 272 (446)
Q Consensus 204 ~~~~~--~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~----~~~~~~~~~~~~~~~~l~~~l~-----~~~~~~ 272 (446)
.+... .-.+.-++..+...|.+-...--...+.+|..+-.. .....+. +++.+.+... ...+++
T Consensus 166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qe-----Lv~ii~eQa~Ld~~f~~sD~e 240 (556)
T PF05918_consen 166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQE-----LVDIIEEQADLDQPFDPSDPE 240 (556)
T ss_dssp TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHH-----HHHHHHHHHTTTS---SSSHH
T ss_pred HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHH-----HHHHHHHHhccCCCCCCcCHH
Confidence 11111 112223445566677653333333445555555441 2222222 2333433321 111233
Q ss_pred HHHHHHHHHHH----Hhc--CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHH
Q 043676 273 IKKEISWIISN----ITA--GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKP 346 (446)
Q Consensus 273 v~~~a~~~l~~----l~~--~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~ 346 (446)
.-...+.++.. +.. .+.....++.+ .++|.+-.+ +...+-..+.++..++..........+++ -++..
T Consensus 241 ~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~-~i~~~ 314 (556)
T PF05918_consen 241 SIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLLP-SIFQL 314 (556)
T ss_dssp HHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT----THHHHHH-HHHHH
T ss_pred HHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHHH-HHHHH
Confidence 33333332222 112 24444444544 577766555 45777888999998888755333333321 13344
Q ss_pred HHhcccC--CCH----HHHHHHHHHHHHHHHhhhh
Q 043676 347 LCDLLLC--SDP----EIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 347 L~~ll~~--~~~----~~~~~~~~~l~~l~~~~~~ 375 (446)
|...+-. ..+ ...++.+.+++++....++
T Consensus 315 L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~ 349 (556)
T PF05918_consen 315 LKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN 349 (556)
T ss_dssp HHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred HHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence 4444432 223 3566667777777666554
No 145
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.68 E-value=0.011 Score=55.34 Aligned_cols=228 Identities=14% Similarity=0.134 Sum_probs=144.0
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC-----CChHHHHHHHHHHHHHcCCChhhHHHHHh
Q 043676 12 WSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRE-----DYPQLQYEAAWVLINIASGTSENTNVVID 86 (446)
Q Consensus 12 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 86 (446)
.+.++.+..+|+++|+|+.... ...+..+.+.|..+.+++.|+.. + .++.....+.|.-++...++.+..+++
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~~RLLFLlTa~~~~~~~~L~~ 119 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLDSRLLFLLTALRPDDRKKLIE 119 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 3567899999999999998875 45567778899999999999886 5 789999999999988877888877775
Q ss_pred c-CChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccc------
Q 043676 87 H-GAVPIFVKLLSS-----------------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEH------ 142 (446)
Q Consensus 87 ~-~~i~~L~~~L~~-----------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~------ 142 (446)
. +++..+...|.. .+......++.++.|+....+.... -.....++.++..+...
T Consensus 120 e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~ 198 (446)
T PF10165_consen 120 EHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPS 198 (446)
T ss_pred HhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCC
Confidence 5 777777775531 1345567788899999854443221 01222344555444222
Q ss_pred --cchhHHHHHHHHHHHhhcCC------------CCCChhhhhhhHHHHHHhhcC----C----CHhHHHHHHHHHHHhc
Q 043676 143 --AKLSMLRNATRTLSNFCRGK------------PEPPFDQVRPALPALAQLVHS----N----DEDVLTYACWSLSYLA 200 (446)
Q Consensus 143 --~~~~~~~~a~~~L~~l~~~~------------~~~~~~~~~~~~~~l~~ll~~----~----~~~v~~~~~~~l~~l~ 200 (446)
+......+++.+|.++--.. ...........+..++.+|.. . -.+.....+.+|..++
T Consensus 199 ~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~ 278 (446)
T PF10165_consen 199 SPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA 278 (446)
T ss_pred CCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH
Confidence 23456778888888773211 000111223445555555541 1 2467778888888888
Q ss_pred cCCcHHHHHHHHhCc-----------------HHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676 201 DGTNDKIQAVIEAGV-----------------CPRLVELLGHPSPSVLTPALRTVGNIVT 243 (446)
Q Consensus 201 ~~~~~~~~~~~~~~~-----------------~~~l~~ll~~~~~~~~~~a~~~l~~l~~ 243 (446)
.......+ .++..+ -..|++++.++.+.++..+...+..||.
T Consensus 279 ~~~~~~Rk-~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 279 RAAREVRK-YLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred HhcHHHHH-HHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 77643333 333333 3345555555555555555555555554
No 146
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.67 E-value=0.00015 Score=42.34 Aligned_cols=39 Identities=38% Similarity=0.757 Sum_probs=35.9
Q ss_pred hhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 043676 78 SENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVA 116 (446)
Q Consensus 78 ~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~ 116 (446)
++.+..+++.|+++.|++++.+++++++..++|+|.|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347788889999999999999999999999999999997
No 147
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.013 Score=58.82 Aligned_cols=242 Identities=12% Similarity=0.111 Sum_probs=150.9
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhc--CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-HHHHHHH
Q 043676 51 VEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDH--GAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP-RCRDLVL 127 (446)
Q Consensus 51 ~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~ 127 (446)
.....+.....+|..+.++|..++.. +.......+. .+...|.+-+++.....+...+.+|..|....+ +..+.+.
T Consensus 659 ~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~ 737 (1176)
T KOG1248|consen 659 DPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP 737 (1176)
T ss_pred hHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34444443379999999999999984 3322222111 233445555555666777777888887775444 3333333
Q ss_pred HcCChHHHHHHhccccchhHHHHHHHHHHHhh--cCC----CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhcc
Q 043676 128 SQGALIPLLAELNEHAKLSMLRNATRTLSNFC--RGK----PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLAD 201 (446)
Q Consensus 128 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~--~~~----~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~ 201 (446)
. .|+.++-.+ ++.+...++++..+|..++ ... ..........+++.+...+-.+........+-++..+..
T Consensus 738 k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~ 814 (1176)
T KOG1248|consen 738 K--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ 814 (1176)
T ss_pred H--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 3 344444445 7778888999999998888 221 122234455666666655554444444443555555553
Q ss_pred CCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHH
Q 043676 202 GTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWII 281 (446)
Q Consensus 202 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l 281 (446)
........-.-.++++.+.-+|.+++++++..|+..+..++...+...-......+++.+..++++. ...+|..+-..+
T Consensus 815 e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~Ll 893 (1176)
T KOG1248|consen 815 EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLLL 893 (1176)
T ss_pred HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHHH
Confidence 3222222222236777788888999999999999999999987776544333445788888888777 788888888888
Q ss_pred HHHhc-CCHHHHHHHHH
Q 043676 282 SNITA-GNREQIQAVID 297 (446)
Q Consensus 282 ~~l~~-~~~~~~~~~~~ 297 (446)
-.++. ...+..+.+..
T Consensus 894 ekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 894 EKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHhCHHHHHhhCH
Confidence 87776 34444444443
No 148
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.64 E-value=0.041 Score=48.97 Aligned_cols=202 Identities=8% Similarity=0.049 Sum_probs=141.9
Q ss_pred hhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHH-----HHHHHH--hCcHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676 171 RPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDK-----IQAVIE--AGVCPRLVELLGHPSPSVLTPALRTVGNIVT 243 (446)
Q Consensus 171 ~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~-----~~~~~~--~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~ 243 (446)
.+.+..|+..+..-+-+.+..+..+..++.....+. ...+.. ..++..|+..- +++++...+...|...+.
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHh
Confidence 567888888888889999999999999988653322 222222 23444444443 345555566666666665
Q ss_pred CCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcC---ChHHHHHHHhcCCcchHHHHH
Q 043676 244 GDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAG---LIRPIVNLLQNAEFDTKKEAA 320 (446)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~---~i~~L~~ll~~~~~~v~~~a~ 320 (446)
.+...+.++....+..+.+....+ ..++...|..++..+....+.....++..+ ++.....++.+++.-+|..++
T Consensus 153 -~e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl 230 (335)
T PF08569_consen 153 -HESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL 230 (335)
T ss_dssp -SHHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred -hHHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence 566777888888889999999988 999999999999998776676666666543 577788899999999999999
Q ss_pred HHHHHhccCCC-HH-HHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhh
Q 043676 321 WAISNATSGGT-QE-QIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAE 376 (446)
Q Consensus 321 ~aL~~l~~~~~-~~-~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~ 376 (446)
..|+.+..... .. ..+++.+..-+..++.+|.+++..++..|..++.-++....+.
T Consensus 231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~ 288 (335)
T PF08569_consen 231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKP 288 (335)
T ss_dssp HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-B
T ss_pred HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCC
Confidence 99999986321 11 1233334455888999999999999999999998877765443
No 149
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.024 Score=47.16 Aligned_cols=253 Identities=15% Similarity=0.177 Sum_probs=152.8
Q ss_pred HHHHHhhcC--CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 5 PALVAGVWS--DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 5 ~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
..+.+.|.. .-..-++.|+..|+++... +.+..+.+...+++ ...+...+.+|+....
T Consensus 6 ~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~------------~~i~~i~ka~~d~s-~llkhe~ay~LgQ~~~------- 65 (289)
T KOG0567|consen 6 ETIGNILVNKSQPLQNRFRALFNLRNLLGP------------AAIKAITKAFIDDS-ALLKHELAYVLGQMQD------- 65 (289)
T ss_pred HHHHHHHcCccHHHHHHHHHHHhhhccCCh------------HHHHHHHHhcccch-hhhccchhhhhhhhcc-------
Confidence 344444443 3345677788777776543 12555555555555 5777788888888765
Q ss_pred HHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676 83 VVIDHGAVPIFVKLLSS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR 160 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 160 (446)
...++.++..|.+ ..+-+|..|..+|+++. .+. .++.+-+.. +++-..+++.+..++..+-.
T Consensus 66 ----~~Av~~l~~vl~desq~pmvRhEAaealga~~--~~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~ 129 (289)
T KOG0567|consen 66 ----EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--DPE---------SLEILTKYI-KDPCKEVRETCELAIKRLEW 129 (289)
T ss_pred ----chhhHHHHHHhcccccchHHHHHHHHHHHhhc--chh---------hHHHHHHHh-cCCccccchHHHHHHHHHHH
Confidence 3468888888876 45788889999999887 222 233344444 55656666666666655533
Q ss_pred CCCCCC-------------hhhhhhhHHHHHHhhcCC-CHhH-HHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC
Q 043676 161 GKPEPP-------------FDQVRPALPALAQLVHSN-DEDV-LTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH 225 (446)
Q Consensus 161 ~~~~~~-------------~~~~~~~~~~l~~ll~~~-~~~v-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~ 225 (446)
...... ......-+..+-..+.+. .+.. ++.+...|.|+-. + ..+..+++-+..
T Consensus 130 ~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E---------eaI~al~~~l~~ 198 (289)
T KOG0567|consen 130 KDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E---------EAINALIDGLAD 198 (289)
T ss_pred hhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H---------HHHHHHHHhccc
Confidence 220000 001112233333333322 2222 3344444544321 1 224455666666
Q ss_pred CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhcc-CchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHH
Q 043676 226 PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVH-NHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPI 304 (446)
Q Consensus 226 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L 304 (446)
++.-.|..+..++++|-+.. .++.+.+.|.+ .+.+.+|.+|+.+|+.++ +++ .++.|
T Consensus 199 ~SalfrhEvAfVfGQl~s~~-----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa--~e~---------~~~vL 256 (289)
T KOG0567|consen 199 DSALFRHEVAFVFGQLQSPA-----------AIPSLIKVLLDETEHPMVRHEAAEALGAIA--DED---------CVEVL 256 (289)
T ss_pred chHHHHHHHHHHHhhccchh-----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhc--CHH---------HHHHH
Confidence 77778889999999886522 35666666643 237899999999999984 344 56677
Q ss_pred HHHHhcCCcchHHHHHHHHHHh
Q 043676 305 VNLLQNAEFDTKKEAAWAISNA 326 (446)
Q Consensus 305 ~~ll~~~~~~v~~~a~~aL~~l 326 (446)
.+.+.+.++-+++.+..+|.-.
T Consensus 257 ~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 257 KEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHHH
Confidence 7888888888888888777654
No 150
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.61 E-value=0.0034 Score=50.67 Aligned_cols=93 Identities=19% Similarity=0.222 Sum_probs=76.5
Q ss_pred CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHH
Q 043676 185 DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDM 264 (446)
Q Consensus 185 ~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~ 264 (446)
++.+|..++.+++.++...+...+ ..++.+...|.++++.+|..|+.++..|...+.-. .+..++..++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence 578999999999999987775554 67899999999999999999999999998744221 123345778888
Q ss_pred hccCchHHHHHHHHHHHHHHhcC
Q 043676 265 LVHNHEEIIKKEISWIISNITAG 287 (446)
Q Consensus 265 l~~~~~~~v~~~a~~~l~~l~~~ 287 (446)
+.++ +++++..|..++..+...
T Consensus 72 l~D~-~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDE-NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCC-CHHHHHHHHHHHHHHHHh
Confidence 8888 999999999999999764
No 151
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.59 E-value=0.0034 Score=48.26 Aligned_cols=131 Identities=12% Similarity=0.123 Sum_probs=102.9
Q ss_pred HHHHHhCcHHHHHHhcCCCCc------cchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCc-hHHHHHHHHHH
Q 043676 208 QAVIEAGVCPRLVELLGHPSP------SVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNH-EEIIKKEISWI 280 (446)
Q Consensus 208 ~~~~~~~~~~~l~~ll~~~~~------~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~v~~~a~~~ 280 (446)
..++..+++..|++++.++.. +....++.++..|..+. ......+...++.+++....... +..+...|...
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 457788999999999988653 55666888888888764 33344566678888888887653 57899999999
Q ss_pred HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHH
Q 043676 281 ISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLV 339 (446)
Q Consensus 281 l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~ 339 (446)
|-+++..++.....+.+.=-++.|+..++..+++++.+|...+..+..+.+++.++.+.
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~ 142 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIA 142 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 99998887776666666666999999999999999999999999998887766665533
No 152
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.58 E-value=0.003 Score=51.03 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCC-hHHHHHH
Q 043676 60 PQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA-LIPLLAE 138 (446)
Q Consensus 60 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~-i~~l~~~ 138 (446)
+.+|..++.+++.++...+...+. .++.+...|+++++.+|..|+.++.+|...... .-.|. +..++..
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~-----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-----k~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEP-----YLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-----KVKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHh-----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-----eehhhhhHHHHHH
Confidence 789999999999999855543332 478999999999999999999999999854321 11222 3677777
Q ss_pred hccccchhHHHHHHHHHHHhhcCC
Q 043676 139 LNEHAKLSMLRNATRTLSNFCRGK 162 (446)
Q Consensus 139 l~~~~~~~~~~~a~~~L~~l~~~~ 162 (446)
+ .+++++++..|..++..+....
T Consensus 72 l-~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 72 L-VDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred H-cCCCHHHHHHHHHHHHHHHHhc
Confidence 7 7889999999999999998873
No 153
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.54 E-value=0.019 Score=50.96 Aligned_cols=203 Identities=11% Similarity=0.103 Sum_probs=143.2
Q ss_pred HHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchh-----hHHHHh--cCChHHHHHHhccCchHHHHHHHHHH
Q 043676 208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQ-----TQCIIN--HGAVPYLLDMLVHNHEEIIKKEISWI 280 (446)
Q Consensus 208 ~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~-----~~~~~~--~~~~~~l~~~l~~~~~~~v~~~a~~~ 280 (446)
+.++..+++..|+..|..-+.+.|..+..+.+++....... ...+.. ..++..++.... ++++-..+...
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~m 146 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDM 146 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHH
Confidence 34667799999999999989999999999999998765333 333332 234444444443 34555666666
Q ss_pred HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHc---CChHHHHhcccCCCHH
Q 043676 281 ISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVRE---GCVKPLCDLLLCSDPE 357 (446)
Q Consensus 281 l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~---~~i~~L~~ll~~~~~~ 357 (446)
|..++. .+...+.+.....+..+.+.++.++.++...|..++..+... .+.....+... .++.....++.+++.-
T Consensus 147 lRec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~-hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYv 224 (335)
T PF08569_consen 147 LRECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR-HKKLVAEFLSNNYDRFFQKYNKLLESSNYV 224 (335)
T ss_dssp HHHHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHCT-SSHH
T ss_pred HHHHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCCeE
Confidence 666654 466677788888999999999999999999999999998765 34554444443 3467788899999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043676 358 IVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYW 425 (446)
Q Consensus 358 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 425 (446)
++..++..|..++-...+.. ...+.+.+..-+..+..++.+++..++-.|-.+..-|.
T Consensus 225 tkrqslkLL~ellldr~n~~----------vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV 282 (335)
T PF08569_consen 225 TKRQSLKLLGELLLDRSNFN----------VMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFV 282 (335)
T ss_dssp HHHHHHHHHHHHHHSGGGHH----------HHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHchhHHH----------HHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence 99999999999997766643 23466666667777888888888888877766655443
No 154
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.53 E-value=0.0013 Score=63.74 Aligned_cols=152 Identities=18% Similarity=0.143 Sum_probs=113.9
Q ss_pred CChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh-hhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHH
Q 043676 130 GALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPF-DQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQ 208 (446)
Q Consensus 130 ~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~ 208 (446)
.++|.+++.+ .......+...+.+|++...+-|.... ......+|.|.+.|.-+|..++...+.++.-+....+....
T Consensus 867 ~ivP~l~~~~-~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 867 DIVPILVSKF-ETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred hhHHHHHHHh-ccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 4678888888 455666778888888888876654332 23477889999999999999999999999887755543333
Q ss_pred HHHHhCcHHHHHHhcCCCC---ccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHH
Q 043676 209 AVIEAGVCPRLVELLGHPS---PSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNI 284 (446)
Q Consensus 209 ~~~~~~~~~~l~~ll~~~~---~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l 284 (446)
..+. -++|.+..+=.+++ ..+|..|+.++..|+...|...-......++..+...|.++ ..-+|++|+.+=.+.
T Consensus 946 ~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 946 EHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQNW 1022 (1030)
T ss_pred HHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhhh
Confidence 2332 56777777766655 46899999999999986665554455667889999999999 889999998765543
No 155
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.50 E-value=0.17 Score=52.60 Aligned_cols=143 Identities=10% Similarity=0.049 Sum_probs=93.8
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV 83 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 83 (446)
+..++..|..+.+.+|-.|+++|..+...+..--....++.++ -.-+.++. ..||+.|+..++......++....
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~V----h~R~~Dss-asVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAV----HGRLNDSS-ASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHH----HHhhccch-hHHHHHHHHHHhhhhhccHHHHHH
Confidence 3456667777789999999999999988752211222233232 22334455 699999999999877656665544
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc--ccchhHHHHHHHHHHHhhcC
Q 043676 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE--HAKLSMLRNATRTLSNFCRG 161 (446)
Q Consensus 84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~~~~~~a~~~L~~l~~~ 161 (446)
.. ..+..-+.++...||..++..+..+|...|..... ...+.+++.+ +....++.-+..++.++--.
T Consensus 893 yY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 893 YY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred HH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 43 44555666788999999999999999877754222 2344444433 22334777777777776555
Q ss_pred C
Q 043676 162 K 162 (446)
Q Consensus 162 ~ 162 (446)
+
T Consensus 962 p 962 (1692)
T KOG1020|consen 962 P 962 (1692)
T ss_pred C
Confidence 4
No 156
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.0041 Score=60.00 Aligned_cols=227 Identities=12% Similarity=0.096 Sum_probs=144.5
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHH
Q 043676 47 VPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126 (446)
Q Consensus 47 ~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 126 (446)
....+..+.++. +-+|..+++.+..+.. ..+....+...+++...+..|++.++-+--+|+..+..+|..-|+
T Consensus 729 ~qeai~sl~d~q-vpik~~gL~~l~~l~e-~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e----- 801 (982)
T KOG4653|consen 729 LQEAISSLHDDQ-VPIKGYGLQMLRHLIE-KRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE----- 801 (982)
T ss_pred HHHHHHHhcCCc-ccchHHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-----
Confidence 334445556666 7899999999999998 446666677789999999999999999999999988888854332
Q ss_pred HHcCChHHHHHHhcccc---chhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC
Q 043676 127 LSQGALIPLLAELNEHA---KLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGT 203 (446)
Q Consensus 127 ~~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~ 203 (446)
.+++.+........ .++.+-.+-.++.++......-.......++...+...++++...|..++..+++++...
T Consensus 802 ---~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~ 878 (982)
T KOG4653|consen 802 ---DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLL 878 (982)
T ss_pred ---hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHH
Confidence 34566665332211 123344444666666655422222333456677777778888888999999999999654
Q ss_pred cHHHHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHHhhcCCchhhHHHHhc---CChHHHHHHhccCchHHHHHHHHH
Q 043676 204 NDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGNIVTGDDFQTQCIINH---GAVPYLLDMLVHNHEEIIKKEISW 279 (446)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~~v~~~a~~ 279 (446)
.......+. ..+..++.+.+. ++..+|++|+..+..+..+.....-.+... .....+........+..++..|..
T Consensus 879 a~~vsd~~~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql 957 (982)
T KOG4653|consen 879 AFQVSDFFH-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQL 957 (982)
T ss_pred hhhhhHHHH-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 433332222 444555555554 567789999999999887665433333211 223333344433324555555555
Q ss_pred HHHHH
Q 043676 280 IISNI 284 (446)
Q Consensus 280 ~l~~l 284 (446)
++-.+
T Consensus 958 ~leei 962 (982)
T KOG4653|consen 958 CLEEI 962 (982)
T ss_pred HHHHH
Confidence 54433
No 157
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.46 E-value=0.0073 Score=46.50 Aligned_cols=126 Identities=15% Similarity=0.103 Sum_probs=100.1
Q ss_pred HHHHHHcCChHHHHHHhccccc-----hhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC--CHhHHHHHHHH
Q 043676 123 RDLVLSQGALIPLLAELNEHAK-----LSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSN--DEDVLTYACWS 195 (446)
Q Consensus 123 ~~~~~~~~~i~~l~~~l~~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~~~~~ 195 (446)
...+...+++..|++++.+... .++...++.++..|.++...........++..++.+.... |..+...++..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 4566788899999999955442 4778889999999988864444455578888888888754 68999999999
Q ss_pred HHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchh
Q 043676 196 LSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQ 248 (446)
Q Consensus 196 l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~ 248 (446)
|-++..+++.....+.+.=.++.|+..|+..++.++..|+..+..|....++.
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 99999988877776666667899999999999999999988888776554443
No 158
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.46 E-value=0.00036 Score=40.63 Aligned_cols=38 Identities=50% Similarity=0.719 Sum_probs=34.6
Q ss_pred HHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhc
Q 043676 290 EQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNAT 327 (446)
Q Consensus 290 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 327 (446)
+....+.+.|+++.|++++.+++++++..++++|.|++
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 35677889999999999999889999999999999986
No 159
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.42 E-value=0.0056 Score=61.19 Aligned_cols=163 Identities=13% Similarity=0.158 Sum_probs=125.0
Q ss_pred HHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcC----CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC-C
Q 043676 152 TRTLSNFCRGK-PEPPFDQVRPALPALAQLVHS----NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLG-H 225 (446)
Q Consensus 152 ~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~----~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~ 225 (446)
..++..+|+.. -.........+.|.++...++ ++|+++..|.-+++.++.-+..... .-++.|+..+. +
T Consensus 898 ~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeks 972 (1251)
T KOG0414|consen 898 ADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKS 972 (1251)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcC
Confidence 33444555443 112344556788888888854 4799999999999998876654444 55688899888 6
Q ss_pred CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHH
Q 043676 226 PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIV 305 (446)
Q Consensus 226 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~ 305 (446)
+++.+|.++.-+++.++...+...+. .-+.+...|.++ ++.+|+.|..+++++...+. +--.|.+..+.
T Consensus 973 p~p~IRsN~VvalgDlav~fpnlie~-----~T~~Ly~rL~D~-~~~vRkta~lvlshLILndm-----iKVKGql~eMA 1041 (1251)
T KOG0414|consen 973 PSPRIRSNLVVALGDLAVRFPNLIEP-----WTEHLYRRLRDE-SPSVRKTALLVLSHLILNDM-----IKVKGQLSEMA 1041 (1251)
T ss_pred CCceeeecchheccchhhhcccccch-----hhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHH
Confidence 89999999999999999877765543 457789999999 99999999999999976422 22358899999
Q ss_pred HHHhcCCcchHHHHHHHHHHhccCC
Q 043676 306 NLLQNAEFDTKKEAAWAISNATSGG 330 (446)
Q Consensus 306 ~ll~~~~~~v~~~a~~aL~~l~~~~ 330 (446)
.++.+++..++.-|-.....++..+
T Consensus 1042 ~cl~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 1042 LCLEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred HHhcCCcHHHHHHHHHHHHHhhhcc
Confidence 9999999999999887777777654
No 160
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.36 E-value=0.0019 Score=45.70 Aligned_cols=68 Identities=18% Similarity=0.312 Sum_probs=57.8
Q ss_pred chhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhc-cCchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043676 230 VLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLV-HNHEEIIKKEISWIISNITAGNREQIQAVID 297 (446)
Q Consensus 230 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 297 (446)
.+...+.+|+|++..++.....+.+.++++.+++.-. ++.+|.+|+.|.+++.|++.+++++...+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 3567889999999999999999999999999988753 3337999999999999999999988776654
No 161
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.045 Score=49.77 Aligned_cols=260 Identities=13% Similarity=0.099 Sum_probs=136.6
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh-hhhhhHH
Q 043676 97 LSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFD-QVRPALP 175 (446)
Q Consensus 97 L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~~ 175 (446)
..+++..+|..|++.|+|.++..|.-.... ..-.+..++.-|.+..+.+++-.+..+|..+.......... ..-++.-
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th-~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ial 345 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTH-KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIAL 345 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHh-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHH
Confidence 345788999999999999998855322221 22246677777767778899999999998887765332222 2244555
Q ss_pred HHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCc---HHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHH
Q 043676 176 ALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGV---CPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCI 252 (446)
Q Consensus 176 ~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~---~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 252 (446)
.+..++.+.+++.+..+...++.++.......+.+....+ ...++-.+.++++. ...||+.....+..+- .++..
T Consensus 346 rlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~-va~ACr~~~~~c~p~l-~rke~ 423 (533)
T KOG2032|consen 346 RLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPY-VARACRSELRTCYPNL-VRKEL 423 (533)
T ss_pred HHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChH-HHHHHHHHHHhcCchh-HHHHH
Confidence 6777888999999999999999888443322222222122 22333334444443 3456666655554221 11111
Q ss_pred HhcCChHHHHHHhccCchHHHHHH-HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCC
Q 043676 253 INHGAVPYLLDMLVHNHEEIIKKE-ISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGT 331 (446)
Q Consensus 253 ~~~~~~~~l~~~l~~~~~~~v~~~-a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 331 (446)
.++++... +..-...+.. .-| ...+....++....+.. ...-++++.-+.++..+...-.++..+-.
T Consensus 424 --~~~~q~~l----d~~~~~~q~Fyn~~-c~~L~~i~~d~l~~~~t-----~~~~~f~sswe~vr~aavl~t~~~vd~l~ 491 (533)
T KOG2032|consen 424 --YHLFQESL----DTDMARFQAFYNQW-CIQLNHIHPDILMLLLT-----EDQHIFSSSWEQVREAAVLKTTRSVDSLV 491 (533)
T ss_pred --HHHHhhhh----HHhHHHHHHHHHHH-HHHHhhhCHHHHHHHHH-----hchhheecchHHHHHHHHHHHHHHHHHhH
Confidence 11222111 1101111111 111 11111112222111111 11122222233455555444444444333
Q ss_pred HHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHH
Q 043676 332 QEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILK 371 (446)
Q Consensus 332 ~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~ 371 (446)
+......--......+..+..++-|+++..+..++..+..
T Consensus 492 ~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 492 RAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 3444333333345666777788889999999999887653
No 162
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.34 E-value=0.041 Score=52.32 Aligned_cols=107 Identities=19% Similarity=0.179 Sum_probs=79.4
Q ss_pred hhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcC-Cch
Q 043676 169 QVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG-DDF 247 (446)
Q Consensus 169 ~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~-~~~ 247 (446)
...+.+..++....+.+..||..++..|..+.......-..+++ ++...+..-+.+..+.||..|+.+|+.+-.. .++
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 44666667777777889999999999999998754433333333 7778888888899999999999999998732 222
Q ss_pred hhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHH
Q 043676 248 QTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIIS 282 (446)
Q Consensus 248 ~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~ 282 (446)
. ..+...+..+++..++++||..|+..+.
T Consensus 161 e------~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 E------CPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred c------ccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 2 2356778888887768999998765544
No 163
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.072 Score=48.52 Aligned_cols=151 Identities=13% Similarity=0.127 Sum_probs=88.1
Q ss_pred hhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCC--chh
Q 043676 171 RPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGD--DFQ 248 (446)
Q Consensus 171 ~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~--~~~ 248 (446)
...+..+..-..+++..++..+++.|++.+...++........-+...+..+.+..+.+|...++.+|..+...- ...
T Consensus 257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l 336 (533)
T KOG2032|consen 257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL 336 (533)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence 333444444445678899999999999999987777765555333333444445566788888888887776421 111
Q ss_pred hHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHHH--cCChHHHHHHHhcCCcchHHHHHHHHHH
Q 043676 249 TQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAVID--AGLIRPIVNLLQNAEFDTKKEAAWAISN 325 (446)
Q Consensus 249 ~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 325 (446)
...+ -.+.-.+..+..+. ++++|..|...++.++. ........+.+ .+-..++.-.+++.++.+-. |+.....
T Consensus 337 ~~~~--l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~ 412 (533)
T KOG2032|consen 337 ESYL--LNIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELR 412 (533)
T ss_pred hhhc--hhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHH
Confidence 1111 12344566777777 88999999888888865 11111222221 12233344445556665543 3334333
No 164
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.33 E-value=0.004 Score=59.63 Aligned_cols=213 Identities=14% Similarity=0.094 Sum_probs=142.9
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT 81 (446)
Q Consensus 2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 81 (446)
|....|+.+..-..+..++....+|........... ...++.+...++......-...++.++.|+++.+...+
T Consensus 504 ~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r 577 (748)
T KOG4151|consen 504 GGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGLENFEALEALTNLASISESDR 577 (748)
T ss_pred cHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhH
Confidence 345566666666677778887777772222221111 14566666666655423446778899999999888888
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHc-CChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676 82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQ-GALIPLLAELNEHAKLSMLRNATRTLSNFCR 160 (446)
Q Consensus 82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 160 (446)
..+.+.-.++.+-.++...++..+..++..+.||....--+...+.+. ...+.....+ ...++.....++.++..++.
T Consensus 578 ~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~-e~~~E~~~lA~a~a~a~I~s 656 (748)
T KOG4151|consen 578 QKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNL-EVADEKFELAGAGALAAITS 656 (748)
T ss_pred HHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHH-HhhhhHHhhhccccccchhh
Confidence 888877777777788888999999999999999996655555555553 3344444444 45666777777766664444
Q ss_pred CC-CCCC-hhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHH
Q 043676 161 GK-PEPP-FDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVE 221 (446)
Q Consensus 161 ~~-~~~~-~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ 221 (446)
.. .... ..........+..++.+.+++++...+..+.++.....+....+++...++.+..
T Consensus 657 v~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~ 719 (748)
T KOG4151|consen 657 VVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSG 719 (748)
T ss_pred cchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHH
Confidence 33 1112 4455677788889999999999999999998876655555555555555444433
No 165
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.022 Score=55.26 Aligned_cols=220 Identities=10% Similarity=0.064 Sum_probs=143.8
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHH
Q 043676 141 EHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLV 220 (446)
Q Consensus 141 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~ 220 (446)
.++.+.++..++..+..+.+...........+++......+++.|+-+--+++..+..+|.-.++ .+++.+.
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~il~dL~ 808 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------DILPDLS 808 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------hhHHHHH
Confidence 34556789999999999999765666677789999999999999999999999988888765443 5556666
Q ss_pred Hh-cCC---CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 043676 221 EL-LGH---PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVI 296 (446)
Q Consensus 221 ~l-l~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 296 (446)
.. ... ...+.+...-.++.+++....+......+ -++..++...+++ +...|..++..++++|.........++
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 63 322 22345555667777777654444333333 4677788888877 888999999999999863222222211
Q ss_pred HcCChHHHHHHHh-cCCcchHHHHHHHHHHhccCCCHHHHHHH--HHcCChHHHHhcccC-CCHHHHHHHHHHHHHHHH
Q 043676 297 DAGLIRPIVNLLQ-NAEFDTKKEAAWAISNATSGGTQEQIKHL--VREGCVKPLCDLLLC-SDPEIVTVCLIGLENILK 371 (446)
Q Consensus 297 ~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l--~~~~~i~~L~~ll~~-~~~~~~~~~~~~l~~l~~ 371 (446)
- .++..++.+.+ ++.+.+|+.|+..+..+..+.+.+....+ ...+....+...... ++..++..+..++..+-.
T Consensus 887 ~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a 964 (982)
T KOG4653|consen 887 H-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQA 964 (982)
T ss_pred H-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 1 24555555555 45788999999999999876554444332 111234444444433 344455555555555433
No 166
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.29 E-value=0.0016 Score=47.35 Aligned_cols=70 Identities=19% Similarity=0.332 Sum_probs=59.3
Q ss_pred ChHHHHhcc-cCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHH
Q 043676 343 CVKPLCDLL-LCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421 (446)
Q Consensus 343 ~i~~L~~ll-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l 421 (446)
++..|+++| .+.|+.+...|+.=|..+++..+.. +..+.+.|+-+.+.+|+++++++|+..|..++
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-------------r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~av 110 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-------------RNIIEKLGAKERVMELMNHEDPEVRYEALLAV 110 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-------------HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-------------HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHH
Confidence 477888888 4557888889999999999998776 58889999999999999999999999999998
Q ss_pred HHhc
Q 043676 422 KTYW 425 (446)
Q Consensus 422 ~~~~ 425 (446)
+.+.
T Consensus 111 Qklm 114 (119)
T PF11698_consen 111 QKLM 114 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 167
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.28 E-value=0.019 Score=55.20 Aligned_cols=220 Identities=14% Similarity=0.104 Sum_probs=143.9
Q ss_pred HHHHHHcCChHHHHHHhccccchhHHHHHHHHHHH-hhcCCCCCChhhhhhhHHHHHHhhcCC-CHhHHHHHHHHHHHhc
Q 043676 123 RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSN-FCRGKPEPPFDQVRPALPALAQLVHSN-DEDVLTYACWSLSYLA 200 (446)
Q Consensus 123 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~~~~~l~~l~ 200 (446)
+...++.|+...|+.+. ....+..+.....+|.. +.- +. ......++.+.+.+... ...-....+.++.|++
T Consensus 497 ~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~~i~f--~~---~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLa 570 (748)
T KOG4151|consen 497 RAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAGKIDF--PG---ERSYEVVKPLDSALHNDEKGLENFEALEALTNLA 570 (748)
T ss_pred cCccccccHHHHHHHHH-HHhchHHHHHHHHHHhhhcCC--CC---CchhhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence 44556778888888887 45556666677777761 111 11 11133344444444432 2233456788889999
Q ss_pred cCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHh-cCChHHHHHHhccCchHHHHHHHHH
Q 043676 201 DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIIN-HGAVPYLLDMLVHNHEEIIKKEISW 279 (446)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~v~~~a~~ 279 (446)
..+....+.+.+.-.++.+-.++..+++..+..++..+.||.-+..-..+.+.+ ....+.....+... +.....+++.
T Consensus 571 s~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a~ 649 (748)
T KOG4151|consen 571 SISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGAG 649 (748)
T ss_pred CcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhccc
Confidence 877766666888777888888888889999999999999999876655555555 34455555555555 7777777777
Q ss_pred HHHHHhcCCHHHHH-HHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhc
Q 043676 280 IISNITAGNREQIQ-AVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDL 350 (446)
Q Consensus 280 ~l~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l 350 (446)
++..++.-....+. ..--......+..++.++++.++...+....|+.. ...+....+.....++.+...
T Consensus 650 a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~-~~~ei~~~~~~~~~~~~l~~~ 720 (748)
T KOG4151|consen 650 ALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE-ALFEIAEKIFETEVMELLSGL 720 (748)
T ss_pred cccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH-HHHHHHHHhccchHHHHHHHH
Confidence 77766553333333 22224577888899999999999999999999544 345555555555555554443
No 168
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.27 E-value=0.019 Score=48.12 Aligned_cols=196 Identities=13% Similarity=0.089 Sum_probs=121.4
Q ss_pred CccchhHHHHHHHHhhcCCchhhHHHHh-cCChHHHHH----H---hccCc---hHHHHHH-HHHHHHHHhcCCHHHHHH
Q 043676 227 SPSVLTPALRTVGNIVTGDDFQTQCIIN-HGAVPYLLD----M---LVHNH---EEIIKKE-ISWIISNITAGNREQIQA 294 (446)
Q Consensus 227 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~l~~----~---l~~~~---~~~v~~~-a~~~l~~l~~~~~~~~~~ 294 (446)
+++.|+.|+.-|+.--...++..-.+.. .|.+..+++ . +..+. ...-|.. |...+..+ +..++.+..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~v-Ashpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCV-ASHPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHH-HH-TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHH-HcChHHHHH
Confidence 4556777777666655545555544553 344443332 1 22110 1122222 33333333 346788889
Q ss_pred HHHcCChHHHHHHHhcCC-----cchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHH
Q 043676 295 VIDAGLIRPIVNLLQNAE-----FDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENI 369 (446)
Q Consensus 295 ~~~~~~i~~L~~ll~~~~-----~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l 369 (446)
+++..+.-.|..+++..+ ..+|-..+.+++.+.+.++++...++.+.+++|...+.++.+++-.+..|..++.++
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999898777777776542 468999999999999998999999999999999999999999988899999999999
Q ss_pred HHhhhhhhcccCCCCccchHHHHHHHhChHHH-HHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 043676 370 LKVGEAERNMGTTIGDVNQYAQFVEEAGGLEK-IENLQSHDNNEIHEKSVKIFKTYWCGRN 429 (446)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 429 (446)
+..+..-.-.. ....+...-...+.. +..+...+++.+-+....+..++.+...
T Consensus 167 L~dd~GL~yiC------~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr 221 (262)
T PF04078_consen 167 LLDDVGLNYIC------QTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR 221 (262)
T ss_dssp HHSHHHHHHHT------SSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred HcchhHHHHHh------cCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence 88766544211 112233333334444 4566778888887776666666665554
No 169
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.26 E-value=0.076 Score=47.00 Aligned_cols=197 Identities=13% Similarity=0.094 Sum_probs=126.1
Q ss_pred HHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHH--HhCcHHHHHHhcCCCCccchhHHHHHHHHhhcC--Cchhh
Q 043676 174 LPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVI--EAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG--DDFQT 249 (446)
Q Consensus 174 ~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~--~~~~~ 249 (446)
+...+..+.......|+.++..+.++...... ...+. ...+++.+.+.++.+..+-+..|+.+++-++-. .....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 33444555566789999999999888754331 11121 225677888888887766667777777777643 22334
Q ss_pred HHHHhcCChHHHHHHhccCc-hHHHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHH--Hhc----------CCc
Q 043676 250 QCIINHGAVPYLLDMLVHNH-EEIIKKEISWIISNITA---GNREQIQAVIDAGLIRPIVNL--LQN----------AEF 313 (446)
Q Consensus 250 ~~~~~~~~~~~l~~~l~~~~-~~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~l--l~~----------~~~ 313 (446)
..+++ .+.+.|...+.+.. ...+|..++.+|+-++. ...+.....++ .+..+... .+. +++
T Consensus 124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence 44444 46788888887762 34566666666666654 33443332222 23322111 111 134
Q ss_pred chHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676 314 DTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 314 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 375 (446)
.+...|+.+.+-+....+........+ ..++.|..+|++++.+||..|-.+|.-+++....
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 688899999888877655544444333 3699999999999999999999999999887664
No 170
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.26 E-value=0.33 Score=50.63 Aligned_cols=143 Identities=14% Similarity=0.139 Sum_probs=98.9
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676 45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD 124 (446)
Q Consensus 45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~ 124 (446)
+.+..++..+..+. ..+|..|++||..+...++.... ...+-..+..-+.+....||+.|+..++......++...
T Consensus 816 ~yLk~Il~~l~e~~-ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 816 PYLKLILSVLGENA-IALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHHhcCch-HHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence 46777888888777 89999999999999986654322 122334444556677899999999999988866665433
Q ss_pred HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc---CCCHhHHHHHHHHHHHhcc
Q 043676 125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH---SNDEDVLTYACWSLSYLAD 201 (446)
Q Consensus 125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~---~~~~~v~~~~~~~l~~l~~ 201 (446)
.. ...+..-+ .++...+|..++..+..+|...|. +. .....++++++ ++...++..+..++..+..
T Consensus 892 qy-----Y~~i~erI-lDtgvsVRKRvIKIlrdic~e~pd--f~---~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 892 QY-----YDQIIERI-LDTGVSVRKRVIKILRDICEETPD--FS---KIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred HH-----HHHHHhhc-CCCchhHHHHHHHHHHHHHHhCCC--hh---hHHHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 32 33455555 577889999999999999998643 22 23334444444 3334478888888777764
Q ss_pred C
Q 043676 202 G 202 (446)
Q Consensus 202 ~ 202 (446)
.
T Consensus 961 ~ 961 (1692)
T KOG1020|consen 961 T 961 (1692)
T ss_pred c
Confidence 3
No 171
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.23 E-value=0.014 Score=54.93 Aligned_cols=252 Identities=14% Similarity=0.109 Sum_probs=133.4
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhh
Q 043676 92 IFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVR 171 (446)
Q Consensus 92 ~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 171 (446)
.++...+ .+...+..|...|......-|...+. ++..++.+. .+.+..++..|+..|..+|.+.+ ....
T Consensus 27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~~----~~v~ 95 (556)
T PF05918_consen 27 EILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLC-EDEDVQIRKQAIKGLPQLCKDNP----EHVS 95 (556)
T ss_dssp HHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHH-T-SSHHHHHHHHHHGGGG--T------T-HH
T ss_pred HHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhHHHHHHhHH----HHHh
Confidence 3444444 57889999999999999888887666 467899999 78899999999999999998853 3456
Q ss_pred hhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC---CCCccchhHHHHHHHHhhc-CCch
Q 043676 172 PALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLG---HPSPSVLTPALRTVGNIVT-GDDF 247 (446)
Q Consensus 172 ~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~---~~~~~~~~~a~~~l~~l~~-~~~~ 247 (446)
.+...|+++|.++++.-...+=.+|..+...++. +.+..+...+. ..++.+|+.++..|..-.. -...
T Consensus 96 kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~ 167 (556)
T PF05918_consen 96 KVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPE 167 (556)
T ss_dssp HHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TT
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHH
Confidence 7889999999999888777777777777665443 22333333332 4677789988877643322 1111
Q ss_pred hhH--HHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc----CCHHHHHHHHHcCChHHHHHHH------hcCCcch
Q 043676 248 QTQ--CIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA----GNREQIQAVIDAGLIRPIVNLL------QNAEFDT 315 (446)
Q Consensus 248 ~~~--~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~i~~L~~ll------~~~~~~v 315 (446)
... .-.+.-++..+.++|.+- ...--...+.+|..+-. .+...++.+++ .+.+.. ...+++.
T Consensus 168 ~~~p~~E~e~~i~~~ikkvL~DV-TaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~-----ii~eQa~Ld~~f~~sD~e~ 241 (556)
T PF05918_consen 168 LLTPQKEMEEFIVDEIKKVLQDV-TAEEFELFMSLLKSLKIYGGKQTIEGRQELVD-----IIEEQADLDQPFDPSDPES 241 (556)
T ss_dssp TS---HHHHHHHHHHHHHHCTT---HHHHHHHHHHHHTSGG---GSSHHHHHHHHH-----HHHHHHTTTS---SSSHHH
T ss_pred HhhchHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhCccccccCChHHHHHHHH-----HHHHHhccCCCCCCcCHHH
Confidence 111 122333456666777653 22222233344444432 24444444433 222222 2223444
Q ss_pred HHHHHHHHHH----hccCC-CHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676 316 KKEAAWAISN----ATSGG-TQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVG 373 (446)
Q Consensus 316 ~~~a~~aL~~----l~~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 373 (446)
....+.++.. +.... +.....++.+ .++|.+-++ +++.+...+..+..+....
T Consensus 242 Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~ 299 (556)
T PF05918_consen 242 IDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFC 299 (556)
T ss_dssp HHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCC
Confidence 4444443333 22222 2334444444 466666555 3344444455555544443
No 172
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.20 E-value=0.039 Score=45.40 Aligned_cols=144 Identities=13% Similarity=0.139 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC----CChHHHHHHHHHHHHHcC-CChhhHHHHHhcCChH
Q 043676 17 SLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRE----DYPQLQYEAAWVLINIAS-GTSENTNVVIDHGAVP 91 (446)
Q Consensus 17 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~----~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~ 91 (446)
.-...|+..|..+++. .+.+..+.+..+--.|-.+|... ..+-+|..++.+++.+.. ++.+....+...++++
T Consensus 94 nRVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 94 NRVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP 171 (293)
T ss_pred chHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence 3345677777777776 56777788876555555665432 236789999999999997 4566777888999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChHHH------HHHH-HcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676 92 IFVKLLSSPSDDVREQAVWALGNVAGDSPRCR------DLVL-SQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK 162 (446)
Q Consensus 92 ~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~------~~~~-~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 162 (446)
..++.+..+++.-+..|..++..+..++.... +.+. -...+..++..+.+.++..+..+++++..+|+.+.
T Consensus 172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 99999999999999999999998886554321 1111 11123444445556778899999999999998874
No 173
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.15 E-value=0.0039 Score=60.57 Aligned_cols=190 Identities=17% Similarity=0.155 Sum_probs=129.6
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHhhcCCCC---------C----ChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHh
Q 043676 133 IPLLAELNEHAKLSMLRNATRTLSNFCRGKPE---------P----PFDQVRPALPALAQLVHSNDEDVLTYACWSLSYL 199 (446)
Q Consensus 133 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~---------~----~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l 199 (446)
..++..| + ++++-..+..++.-+..+.+. . .......++|.+++.+.+.....+..-+.+|.++
T Consensus 818 ~klld~L-s--~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshV 894 (1030)
T KOG1967|consen 818 EKLLDLL-S--GPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSHV 894 (1030)
T ss_pred HHHHHhc-C--CccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHHH
Confidence 3555555 2 244555666666665555411 1 1123367889999999877778888888888888
Q ss_pred ccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCch--HHHHHHH
Q 043676 200 ADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHE--EIIKKEI 277 (446)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~v~~~a 277 (446)
..+-|...-.-.-..++|.|++.|.-+|..+|..++.++..+....+.....-+. .+++.++.+=.+..+ -.+|..|
T Consensus 895 l~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~A 973 (1030)
T KOG1967|consen 895 LTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDA 973 (1030)
T ss_pred HhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHHH
Confidence 8776653322222378889999999999999999999998887655544433332 366777777665522 5799999
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHh
Q 043676 278 SWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNA 326 (446)
Q Consensus 278 ~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 326 (446)
..++..+...-|...-...+..++..+++.|+++..-+|++|..+=.+.
T Consensus 974 LqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 974 LQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred HHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 9999999873333323333446888999999888888999988764443
No 174
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.13 E-value=0.079 Score=46.91 Aligned_cols=241 Identities=12% Similarity=0.063 Sum_probs=139.2
Q ss_pred hhhHHHHH-HhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCc-hh
Q 043676 171 RPALPALA-QLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDD-FQ 248 (446)
Q Consensus 171 ~~~~~~l~-~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~-~~ 248 (446)
.+++..++ +.+++.++.+|+.++.|++-.+--+..... ..++.+...+..++..++..|+.++..+..... ..
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 35565544 788899999999999999998876664443 446677777777788999999999998864322 11
Q ss_pred hHHH-------HhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC----CcchHH
Q 043676 249 TQCI-------INHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA----EFDTKK 317 (446)
Q Consensus 249 ~~~~-------~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~----~~~v~~ 317 (446)
.... -...+...+.+.+.+. +++++..|+..++.+...+.-.- ...++..|+-+.-+. +..+++
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ 174 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQ 174 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHH
Confidence 1111 1235677888888888 88999999999999865321110 013455555444432 345665
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCC----HHHHHHHHHHHHHHHHhhhhhhcccCCCCc--cchHHH
Q 043676 318 EAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSD----PEIVTVCLIGLENILKVGEAERNMGTTIGD--VNQYAQ 391 (446)
Q Consensus 318 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~--~~~~~~ 391 (446)
.-...+-..+.. .+++... +.+.+++.+..+.+..+ +.-.....++...+++.............. ......
T Consensus 175 ~L~~Ffp~y~~s-~~~~Q~~-l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~~~~~~~~~~~~~~~~~h~ 252 (298)
T PF12719_consen 175 CLSVFFPVYASS-SPENQER-LAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDPSKLVKESNQEIQNESVHV 252 (298)
T ss_pred HHHHHHHHHHcC-CHHHHHH-HHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCChhhccCccccccccccHHH
Confidence 555555555543 4555444 45557777777765433 222222333333333332222211000000 011122
Q ss_pred HHHHhChHHHHHHhhcCCCHH--HHHHHHHHHHHhcCC
Q 043676 392 FVEEAGGLEKIENLQSHDNNE--IHEKSVKIFKTYWCG 427 (446)
Q Consensus 392 ~l~~~~~~~~l~~l~~~~~~~--v~~~a~~~l~~~~~~ 427 (446)
.+ +++.+..+..++..+ ..+.-.+.|.++.-.
T Consensus 253 ~L----a~~il~~i~~~~~~~~~~~k~~~~~L~~L~i~ 286 (298)
T PF12719_consen 253 DL----AIDILNEILSDPEKEKEERKALCKALSKLEIS 286 (298)
T ss_pred HH----HHHHHHHHHhccccchHHHHHHHHHHhccccC
Confidence 22 255566666444333 566677777777554
No 175
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.19 Score=48.35 Aligned_cols=162 Identities=18% Similarity=0.170 Sum_probs=103.1
Q ss_pred cHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHH
Q 043676 215 VCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQA 294 (446)
Q Consensus 215 ~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 294 (446)
.=+.+-+++.+.++-+|......++---.+.. ..+++..++...-+..+.+||..|+-+|+-++..+++.
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~--- 589 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ--- 589 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh---
Confidence 33455566677777777776665543222221 12466777777444438999999999999998887764
Q ss_pred HHHcCChHHHHHHHh-cCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676 295 VIDAGLIRPIVNLLQ-NAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVG 373 (446)
Q Consensus 295 ~~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 373 (446)
.+..+.+|. +-++.||..++.+|+-.+.+..... .+..|..+.+++..-||+.|+-++.-++.-.
T Consensus 590 ------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 590 ------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred ------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence 344555554 5599999999999998777543222 2444556666777789999998888766433
Q ss_pred hhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHH
Q 043676 374 EAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIH 414 (446)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~ 414 (446)
.... +|-...| .+.+.++..+.+++.-
T Consensus 656 t~~~---------~pkv~~f-----rk~l~kvI~dKhEd~~ 682 (929)
T KOG2062|consen 656 TEQL---------CPKVNGF-----RKQLEKVINDKHEDGM 682 (929)
T ss_pred cccc---------CchHHHH-----HHHHHHHhhhhhhHHH
Confidence 3221 1112222 3446677777776643
No 176
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.09 E-value=0.04 Score=48.75 Aligned_cols=191 Identities=15% Similarity=0.171 Sum_probs=115.4
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh--hhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccC--CcHHHHH
Q 043676 134 PLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFD--QVRPALPALAQLVHSNDEDVLTYACWSLSYLADG--TNDKIQA 209 (446)
Q Consensus 134 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~--~~~~~~~ 209 (446)
..+..+ .+.....|..++..+.++.......... ....+++.+...++.+..+-+..++.+++-++-. .......
T Consensus 47 ~~Id~l-~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 47 EAIDLL-TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHH-HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 444444 4456778888888888887665332222 2245677788888877766666777777777644 2233444
Q ss_pred HHHhCcHHHHHHhcCCCCc--cchhHHHHHHHHhhcC---CchhhHHHHhcCChHHHH--HHhccC---------chHHH
Q 043676 210 VIEAGVCPRLVELLGHPSP--SVLTPALRTVGNIVTG---DDFQTQCIINHGAVPYLL--DMLVHN---------HEEII 273 (446)
Q Consensus 210 ~~~~~~~~~l~~ll~~~~~--~~~~~a~~~l~~l~~~---~~~~~~~~~~~~~~~~l~--~~l~~~---------~~~~v 273 (446)
+++ .+.+.|.+.+.+.+. .+|..++.+|+.++.. .+......+ ..+..+. ...+.. .++.+
T Consensus 126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 555 677888888887544 4555666677666532 222222111 1233121 222211 12456
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccC
Q 043676 274 KKEISWIISNITAG-NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSG 329 (446)
Q Consensus 274 ~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 329 (446)
...|+.+-+-+... +........+ ..++.|..+|++.+.+||..|..+|.-+...
T Consensus 203 ~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 76766555555442 3333333333 4799999999999999999999999988653
No 177
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.21 Score=48.06 Aligned_cols=299 Identities=16% Similarity=0.098 Sum_probs=166.8
Q ss_pred HHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC-------CChHHHHHHHHHHHHHcC--CChhhHHHHHhcCCh
Q 043676 20 LEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRE-------DYPQLQYEAAWVLINIAS--GTSENTNVVIDHGAV 90 (446)
Q Consensus 20 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~-------~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~i 90 (446)
..|+.++..+.+.. .+ .. -.|+++.+...+... +++.-.+.|++.+.++.. ..+....-+.+.-++
T Consensus 388 laal~fl~~~~sKr-ke--~T--fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv 462 (970)
T COG5656 388 LAALFFLIISKSKR-KE--ET--FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIV 462 (970)
T ss_pred HHHHHHHHHHhccc-ch--hh--hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 44555665544432 11 11 137899999988321 124456667777777665 334444445556667
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC--Chh
Q 043676 91 PIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEP--PFD 168 (446)
Q Consensus 91 ~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~--~~~ 168 (446)
+.++..++++.--++..++..+..+..+-+. ...-..+.....+.+ ++.+-.++..|+-++..+..+.... -..
T Consensus 463 ~hv~P~f~s~ygfL~Srace~is~~eeDfkd---~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~q~h~k~sa 538 (970)
T COG5656 463 NHVIPAFRSNYGFLKSRACEFISTIEEDFKD---NGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNEQSHEKFSA 538 (970)
T ss_pred HHhhHhhcCcccchHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhchhhhHHHHh
Confidence 8888888998889999999999988643322 222222455566677 4577788888999998887775111 111
Q ss_pred hhhhhHHHHHHhhcCCCHhHHHHHHHHHHH-hccC----CcHHHHHHHHhCcHHHHHHhcCCCC------ccchhHHHHH
Q 043676 169 QVRPALPALAQLVHSNDEDVLTYACWSLSY-LADG----TNDKIQAVIEAGVCPRLVELLGHPS------PSVLTPALRT 237 (446)
Q Consensus 169 ~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~-l~~~----~~~~~~~~~~~~~~~~l~~ll~~~~------~~~~~~a~~~ 237 (446)
...+.++.+..+-+.-+.++...++..+.. .+.. .++....+++ .++.....++.+++ .+-+..|.+.
T Consensus 539 hVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasGi 617 (970)
T COG5656 539 HVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASGI 617 (970)
T ss_pred hhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHHH
Confidence 224444555555444455555555544422 2221 1111111111 23334444444431 1223345555
Q ss_pred HHHhhc-----CCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC
Q 043676 238 VGNIVT-----GDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAE 312 (446)
Q Consensus 238 l~~l~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 312 (446)
|..+.. .+....-.-+.....|.+--++++. -.++-.+|+..+-+.+....+ +..+. -|+.+.+.+++.+..
T Consensus 618 L~T~~smiLSlen~p~vLk~le~slypvi~Filkn~-i~dfy~Ea~dildg~tf~ske-I~pim-wgi~Ell~~~l~~~~ 694 (970)
T COG5656 618 LRTIESMILSLENRPLVLKYLEVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKE-IEPIM-WGIFELLLNLLIDEI 694 (970)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHH-hhhhh-hHHHHHHHhcccccc
Confidence 544431 1222222223445667777777777 777888888888777543222 12121 256666666666655
Q ss_pred c-chHHHHHHHHHHhccCCC
Q 043676 313 F-DTKKEAAWAISNATSGGT 331 (446)
Q Consensus 313 ~-~v~~~a~~aL~~l~~~~~ 331 (446)
. .-...+..++.|+...+.
T Consensus 695 t~~y~ee~~~al~nfityG~ 714 (970)
T COG5656 695 TAVYSEEVADALDNFITYGK 714 (970)
T ss_pred hhhhHHHHHHHHHHHHHhCc
Confidence 3 667788889999887763
No 178
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.01 E-value=0.0088 Score=59.86 Aligned_cols=160 Identities=18% Similarity=0.186 Sum_probs=122.6
Q ss_pred ChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC
Q 043676 89 AVPIFVKLLSS----PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPE 164 (446)
Q Consensus 89 ~i~~L~~~L~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 164 (446)
..|.+++..+. .+|+++..|..+|+.+..-+.+..+. .++.++..+.+++++.++.++.-+++-++-..|+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 34556666643 57999999999999998555443322 4789999998899999999999999988766543
Q ss_pred CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcC
Q 043676 165 PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG 244 (446)
Q Consensus 165 ~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~ 244 (446)
.....-+.+...+++.++.+|..|+..+.+|.-++.-+.+ |.++.+..++.+++..++..|=..+..|+..
T Consensus 995 ----lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVK-----Gql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 995 ----LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVK-----GQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred ----ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhc-----ccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 2345667888889999999999999999999876554444 9999999999999999988888777777764
Q ss_pred CchhhHHHHhcCChHHHHHHhccC
Q 043676 245 DDFQTQCIINHGAVPYLLDMLVHN 268 (446)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~l~~~ 268 (446)
... + .+++|-++..|.++
T Consensus 1066 ~n~----i--ynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1066 GNT----I--YNLLPDILSRLSNG 1083 (1251)
T ss_pred ccc----h--hhhchHHHHhhccC
Confidence 432 2 13667777777655
No 179
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.01 E-value=0.037 Score=46.40 Aligned_cols=142 Identities=12% Similarity=0.160 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC----ChHHHHHHHHHHHHHcC-CChhhHHHHHhcCChHHH
Q 043676 19 QLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRED----YPQLQYEAAWVLINIAS-GTSENTNVVIDHGAVPIF 93 (446)
Q Consensus 19 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~----~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L 93 (446)
...|+..|..+++. ++.+..+++..+.-.|..+|+..+ .+.+|..++.+++.+.. ++++....+.+.++++..
T Consensus 67 VcnaLaLlQ~vAsh--petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplc 144 (262)
T PF04078_consen 67 VCNALALLQCVASH--PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLC 144 (262)
T ss_dssp HHHHHHHHHHHHH---TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHHHHHcC--hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHH
Confidence 34566666677786 678888999887777777776543 25688899999999987 567788888999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCChHHH-------HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676 94 VKLLSSPSDDVREQAVWALGNVAGDSPRCR-------DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK 162 (446)
Q Consensus 94 ~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~-------~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 162 (446)
++.++.+++-.+..|..++..+..++.... ....-...+..++..+...+++.+.++++++...|+.+.
T Consensus 145 Lr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 145 LRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 999999999999999998888875543221 111111245555665667789999999999999999885
No 180
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=97.01 E-value=0.027 Score=51.19 Aligned_cols=221 Identities=12% Similarity=0.158 Sum_probs=132.0
Q ss_pred HHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hHHHHHHHHcCChHHHHHHhcccc
Q 043676 65 EAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAELNEHA 143 (446)
Q Consensus 65 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~ 143 (446)
.|++.|-.+....+.....+.+.++++.++..++.+-...++. .-...-.... ++.+..... ...+ ...
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~i-~~~ 72 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVD-------GYSI-SYQ 72 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCccccccc-------cccc-CHH
Confidence 4667777777766777788888999999999886422222210 0000000000 000000000 0000 111
Q ss_pred chhHHHHHHHHHHHhhc-CCCCC---Chhhh-hhhHHHHHHhhcCC---CHhHHHHHHHHHHHhccCCcHHHHHHHHhCc
Q 043676 144 KLSMLRNATRTLSNFCR-GKPEP---PFDQV-RPALPALAQLVHSN---DEDVLTYACWSLSYLADGTNDKIQAVIEAGV 215 (446)
Q Consensus 144 ~~~~~~~a~~~L~~l~~-~~~~~---~~~~~-~~~~~~l~~ll~~~---~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~ 215 (446)
...+.+..+.++..+.. ..... +-... ..+...|..++++. .+.+...++..+..+..+.|.....+.+.|+
T Consensus 73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl 152 (379)
T PF06025_consen 73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGL 152 (379)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCC
Confidence 22344555555555555 22111 11222 45666777777765 4889999999999999999988888999999
Q ss_pred HHHHHHhcC-C---CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHH--HHH-HHHH----HHHHH
Q 043676 216 CPRLVELLG-H---PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEI--IKK-EISW----IISNI 284 (446)
Q Consensus 216 ~~~l~~ll~-~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--v~~-~a~~----~l~~l 284 (446)
.+.+++.+. . ++.++....-.+++.+|- +....+.+.+.+.++.+++++.++ +.- .+. ..+. .+-.|
T Consensus 153 ~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~-~~~~~l~~~d~a~~lG~~~DEL 230 (379)
T PF06025_consen 153 IDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSP-DYVKALRRRDTASNLGNSFDEL 230 (379)
T ss_pred hHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCH-HHHHHhcccchHHHHHHHHHHH
Confidence 999999988 4 344555556667777777 556677788899999999999876 321 111 2333 33444
Q ss_pred hcCCHHHHHHHHH
Q 043676 285 TAGNREQIQAVID 297 (446)
Q Consensus 285 ~~~~~~~~~~~~~ 297 (446)
.++.+..+..+++
T Consensus 231 ~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 231 MRHHPSLKPDIID 243 (379)
T ss_pred HccCHHHHHHHHH
Confidence 5566665555544
No 181
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.94 E-value=0.0019 Score=47.00 Aligned_cols=72 Identities=11% Similarity=0.134 Sum_probs=60.2
Q ss_pred ChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhcc
Q 043676 257 AVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATS 328 (446)
Q Consensus 257 ~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 328 (446)
++..|+.+|..+.++.+..-||.-|+.++...|..+..+-+.|+-..+++++.+++++|+.+|+.++..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 578899999655478888889999999998778887777788999999999999999999999999988754
No 182
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.93 E-value=0.05 Score=48.19 Aligned_cols=172 Identities=16% Similarity=0.130 Sum_probs=111.6
Q ss_pred CCHHHHH-HhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hHH
Q 043676 45 GVVPRFV-EFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS-PRC 122 (446)
Q Consensus 45 ~~~~~L~-~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~-~~~ 122 (446)
+++..|+ ..+++++ +.+|..|+.||+-.+--+.+.... .++.+...++..++.++..|+.++..+.... ...
T Consensus 26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4455544 6778888 899999999999988745443332 2677777777789999999999999887321 111
Q ss_pred HHH-------HHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc----CCCHhHHHH
Q 043676 123 RDL-------VLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH----SNDEDVLTY 191 (446)
Q Consensus 123 ~~~-------~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~----~~~~~v~~~ 191 (446)
-+. ......+..+.+.+ .+.+++++..++..++.|.-...... ...++..|+-+.- .++..++..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 111 11223455666677 55688999999999999887763322 2344444443332 224667666
Q ss_pred HHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCC
Q 043676 192 ACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPS 227 (446)
Q Consensus 192 ~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~ 227 (446)
....+-..+...+.... .+...+++.+..+....+
T Consensus 176 L~~Ffp~y~~s~~~~Q~-~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 176 LSVFFPVYASSSPENQE-RLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHHhCcc
Confidence 66667777776665544 555577777777665543
No 183
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.89 E-value=0.087 Score=47.71 Aligned_cols=185 Identities=13% Similarity=0.117 Sum_probs=114.1
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHcCCC-hhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHHH
Q 043676 49 RFVEFLMREDYPQLQYEAAWVLINIASGT-SENTNVVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDLV 126 (446)
Q Consensus 49 ~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~ 126 (446)
.++.-+......+-+..|+.-|..+.... -....... ..++..+++.|.+ .++..+..|+++|..++...+..-..
T Consensus 290 ~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D- 367 (516)
T KOG2956|consen 290 DLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD- 367 (516)
T ss_pred HHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc-
Confidence 33344443322455666776555555433 22222222 2346778888888 78889999999999999776531100
Q ss_pred HHcCChHHHHHHhccccchhHHHHHHH-HHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcH
Q 043676 127 LSQGALIPLLAELNEHAKLSMLRNATR-TLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTND 205 (446)
Q Consensus 127 ~~~~~i~~l~~~l~~~~~~~~~~~a~~-~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~ 205 (446)
...-++..++..- .+.+..+...|.. ++..++...|... +..+..++.+.|.+....++..+..++..-+.
T Consensus 368 stE~ai~K~Leaa-~ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~ 439 (516)
T KOG2956|consen 368 STEIAICKVLEAA-KDSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTADEPRAVAVIKMLTKLFERLSA 439 (516)
T ss_pred hHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCH
Confidence 0111244444444 3444444444444 4555565555433 34455555667888888888888888865443
Q ss_pred HHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676 206 KIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT 243 (446)
Q Consensus 206 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~ 243 (446)
..-..+-.++.|.+++..++.+..+|..|.+||-.+..
T Consensus 440 EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 440 EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 32223334889999999999999999999999987764
No 184
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.85 E-value=0.1 Score=49.74 Aligned_cols=257 Identities=12% Similarity=0.120 Sum_probs=161.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHH
Q 043676 98 SSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPAL 177 (446)
Q Consensus 98 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l 177 (446)
.-.+.+-+..-...|.... +...+.+.....++.++..+. ..+ .-...+..+..+....... ....+++|.+
T Consensus 264 ~lks~~eK~~Ff~~L~~~l---~~~pe~i~~~kvlp~Ll~~~~-~g~--a~~~~ltpl~k~~k~ld~~--eyq~~i~p~l 335 (690)
T KOG1243|consen 264 RLKSVEEKQKFFSGLIDRL---DNFPEEIIASKVLPILLAALE-FGD--AASDFLTPLFKLGKDLDEE--EYQVRIIPVL 335 (690)
T ss_pred ccCcHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhh-ccc--cchhhhhHHHHhhhhcccc--ccccchhhhH
Confidence 3345555555444444422 222234445555666666662 222 1111111222222221111 1556899999
Q ss_pred HHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCC
Q 043676 178 AQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGA 257 (446)
Q Consensus 178 ~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~ 257 (446)
+++++..|..+|-..+.-+-....+-. ...++..+++.+..-+.+.++.+|+.++.++..++..-.. ..+....
T Consensus 336 ~kLF~~~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~---~~Ln~El 409 (690)
T KOG1243|consen 336 LKLFKSPDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK---RNLNGEL 409 (690)
T ss_pred HHHhcCcchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch---hhhcHHH
Confidence 999999999999988888877765533 2356678999999999999999999999999988863322 1233334
Q ss_pred hHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHH
Q 043676 258 VPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKH 337 (446)
Q Consensus 258 ~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 337 (446)
+..+...-.+. +..+|-...-+++.++....... .+.-....+.+-+++.-..-|..+.+++......-....
T Consensus 410 lr~~ar~q~d~-~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~--- 482 (690)
T KOG1243|consen 410 LRYLARLQPDE-HGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSE--- 482 (690)
T ss_pred HHHHHhhCccc-cCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhh---
Confidence 44444444434 67788888888887755322211 222234445566666667888888888887655422211
Q ss_pred HHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhh
Q 043676 338 LVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAE 376 (446)
Q Consensus 338 l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~ 376 (446)
+...+++.+.-+.-+++..++..+..++..+....++.
T Consensus 483 -va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 483 -VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred -hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence 23347888888889999999999999998887766654
No 185
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.84 E-value=0.51 Score=47.23 Aligned_cols=180 Identities=17% Similarity=0.221 Sum_probs=111.5
Q ss_pred hcCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc---cccc----hhHHHHHHH
Q 043676 86 DHGAVPIFVKLLSS-----PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN---EHAK----LSMLRNATR 153 (446)
Q Consensus 86 ~~~~i~~L~~~L~~-----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~----~~~~~~a~~ 153 (446)
+.|++..++.++.+ .........+..|...+ .-+.+|+.+.+.++++.|+..+. .... ..+.+..+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 46889999998876 23456666666776666 44678999999999999998874 2222 456666666
Q ss_pred HHHHhhcCCCCCCh---------h----hhhhhHHHHHHhhcC----CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcH
Q 043676 154 TLSNFCRGKPEPPF---------D----QVRPALPALAQLVHS----NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVC 216 (446)
Q Consensus 154 ~L~~l~~~~~~~~~---------~----~~~~~~~~l~~ll~~----~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 216 (446)
++..+......... . ....-+..+...+.+ .++.+....+++|..++...++..+.+++. +
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F 271 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--F 271 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--H
Confidence 66555443311111 0 123335555555553 468999999999999999988888766642 2
Q ss_pred HHHHHhcCC--CCccchhHHHHHHHHhhcCC------chhhHHHHhcCChHHHHHHhccC
Q 043676 217 PRLVELLGH--PSPSVLTPALRTVGNIVTGD------DFQTQCIINHGAVPYLLDMLVHN 268 (446)
Q Consensus 217 ~~l~~ll~~--~~~~~~~~a~~~l~~l~~~~------~~~~~~~~~~~~~~~l~~~l~~~ 268 (446)
...+++=.. ....--...+.+++.++.+- ....+.+++.|++...+..|...
T Consensus 272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~ 331 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH 331 (802)
T ss_pred HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh
Confidence 222222111 11111123455666665433 24566677888888888877554
No 186
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.84 E-value=0.1 Score=47.21 Aligned_cols=174 Identities=10% Similarity=0.102 Sum_probs=111.4
Q ss_pred hhHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcC-CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh
Q 043676 145 LSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHS-NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVEL 222 (446)
Q Consensus 145 ~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~l 222 (446)
.+-+..|+.-|..+.... -...-.....++..+++.|.+ .++..+..+++.|..++.+.+.+...-.+ -.+..+++.
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Lea 379 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLEA 379 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHHH
Confidence 344455555444444433 222333456777788888887 68899999999999999887654332222 344555566
Q ss_pred cCCCCccchhHHHH-HHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCC
Q 043676 223 LGHPSPSVLTPALR-TVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NREQIQAVIDAGL 300 (446)
Q Consensus 223 l~~~~~~~~~~a~~-~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~ 300 (446)
-.+.++.+...|.. |+.-++.+.|... +..+..++... +...-..++..+..++.. +.+....++. .+
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~-di 449 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLLP-DI 449 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhhh-hh
Confidence 56656555555544 4555566555432 23344444445 666666777788888763 3443333443 79
Q ss_pred hHHHHHHHhcCCcchHHHHHHHHHHhccC
Q 043676 301 IRPIVNLLQNAEFDTKKEAAWAISNATSG 329 (446)
Q Consensus 301 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 329 (446)
.|.+++..++.+..||+.|+++|..+...
T Consensus 450 aP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 450 APCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred hhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 99999999999999999999999988653
No 187
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.66 E-value=0.3 Score=40.44 Aligned_cols=142 Identities=13% Similarity=0.055 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-----CcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHH
Q 043676 273 IKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA-----EFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPL 347 (446)
Q Consensus 273 v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L 347 (446)
-|..-+.+|..+....++.+..+.+..+--.+..++... ...+|-.++.+++.+.+.++.+...++...+++|..
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 344444444444455578888888877766666777543 457899999999999999999999999999999999
Q ss_pred HhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHH-----HHHhhcCCCHHHHHHHHHHHH
Q 043676 348 CDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEK-----IENLQSHDNNEIHEKSVKIFK 422 (446)
Q Consensus 348 ~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----l~~l~~~~~~~v~~~a~~~l~ 422 (446)
.+.++.+++.-+..|..++.+++-.+..-. -.+...++.-.+.. +..+.+.+++.+-+-+..+.-
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL~----------YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYl 243 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGLY----------YICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYL 243 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccHH----------HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999999999999999999999876554432 12333333333332 344556666666555554444
Q ss_pred Hh
Q 043676 423 TY 424 (446)
Q Consensus 423 ~~ 424 (446)
++
T Consensus 244 rL 245 (293)
T KOG3036|consen 244 RL 245 (293)
T ss_pred Hh
Confidence 44
No 188
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.54 E-value=0.018 Score=45.23 Aligned_cols=143 Identities=15% Similarity=0.146 Sum_probs=98.0
Q ss_pred HHHHhcC--CCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHH
Q 043676 218 RLVELLG--HPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAV 295 (446)
Q Consensus 218 ~l~~ll~--~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 295 (446)
.++..+. ...+++|..+.-++..+.. ... .-....+-+.+-..+... +.+-...++.++..+--+.++....+
T Consensus 7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l~---~~~-~~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 7 TLLTSLDMLRQPEEVRSHALVILSKLLD---AAR-EEFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp HHHHHHHCTTTSCCHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHhcccCCCHhHHHHHHHHHHHHHH---HhH-HHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 3444443 3677789999888888842 222 222333445555566555 66677788889998877888877777
Q ss_pred H-HcCChHHHHHHHh--cCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhccc-CCCHH-HHHHHHHHHHH
Q 043676 296 I-DAGLIRPIVNLLQ--NAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL-CSDPE-IVTVCLIGLEN 368 (446)
Q Consensus 296 ~-~~~~i~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~-~~~~~~~~l~~ 368 (446)
. ..|+++.+..++. .++..++..++.+|..-+. +...+.. +.+.+++.|.+..+ ++++. ++..|+=+|.+
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~~-I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--DKSCRTF-ISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHHC-CHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHHH-HHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 6 6788999999999 6788999999999988776 4455555 55568999999995 44455 67766655543
No 189
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.51 E-value=0.42 Score=47.49 Aligned_cols=194 Identities=17% Similarity=0.133 Sum_probs=119.0
Q ss_pred HHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHH--HHHHhhcCCCH-h
Q 043676 111 ALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALP--ALAQLVHSNDE-D 187 (446)
Q Consensus 111 ~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~--~l~~ll~~~~~-~ 187 (446)
+++++....+.....+.+.+++..+...+......++...++..+.+++...+..........+. .+-.++..-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 56677878888888889999999999999766788999999999999998874444433332222 33334444343 7
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHH-HHHHhc
Q 043676 188 VLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPY-LLDMLV 266 (446)
Q Consensus 188 v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~-l~~~l~ 266 (446)
.-+.++..+..+....++.. ...-+..+...+......-+.......-...+.+ +..++.
T Consensus 574 rsY~~~siLa~ll~~~~~~~-------------------~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~ 634 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTT-------------------ECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILR 634 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCc-------------------cccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhc
Confidence 77777777777776544311 1112222222222222111111111111122233 556666
Q ss_pred cCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-CcchHHHHHHHH
Q 043676 267 HNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA-EFDTKKEAAWAI 323 (446)
Q Consensus 267 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL 323 (446)
.+..+.....|+|++.+++...++..+...+.++++.+.+.-... ..+++..+...+
T Consensus 635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 554678889999999999988888777788888888777654332 334444444443
No 190
>PRK14707 hypothetical protein; Provisional
Probab=96.44 E-value=1.9 Score=47.16 Aligned_cols=358 Identities=15% Similarity=0.110 Sum_probs=201.8
Q ss_pred HHHHHHhhcC-CCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC-C-CHHHHHHHHHHHHHhhCCChHHH
Q 043676 47 VPRFVEFLMR-EDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS-P-SDDVREQAVWALGNVAGDSPRCR 123 (446)
Q Consensus 47 ~~~L~~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-~-~~~v~~~a~~~l~~l~~~~~~~~ 123 (446)
+..++..++. +++.+.+..+......++. ++..+..+-.+| |..++..+.. + ++..+..+...-..++.+ ...+
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~~~q~-ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~ 241 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAMDAQG-VATVLNALCKWPDTPDCGNAVSALAERLADE-SRLR 241 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcC-ChhhhcccchHH-HHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHH
Confidence 4455555433 3335666666666666666 555565554444 5566665554 4 455555555444555543 4444
Q ss_pred HHHHHcCChHHHHHHhccccchhHHHHHHHHHH-HhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccC
Q 043676 124 DLVLSQGALIPLLAELNEHAKLSMLRNATRTLS-NFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADG 202 (446)
Q Consensus 124 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~ 202 (446)
..+- ...+-..++.|.+-++......+...+. .++.+........-.++-..|-.+-+-.+..+...+...+..=...
T Consensus 242 ~~~~-~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~ 320 (2710)
T PRK14707 242 NELK-PQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLAD 320 (2710)
T ss_pred HhCC-hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc
Confidence 4433 3346677777767777666666655554 4544432222222233334444444556666666665555543333
Q ss_pred CcHHHHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhc-cCchHHHHHHHHHH
Q 043676 203 TNDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLV-HNHEEIIKKEISWI 280 (446)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~v~~~a~~~ 280 (446)
+++..+.+ +.-.+...+.-|+. ++..+-..|...|..-....+..++.+ +...+..++.-+. -+ +..+...|+..
T Consensus 321 d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l-~~q~~a~~lNalsKWp-~~~~c~~aa~~ 397 (2710)
T PRK14707 321 DPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDL-EPQGVSSVLNALSKWP-DTPVCAAAASA 397 (2710)
T ss_pred cHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhccc-chhHHHHHHhhhhcCC-CchHHHHHHHH
Confidence 44444333 22333334444444 565555555555544444355555433 3344455555554 45 66677777777
Q ss_pred HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHH
Q 043676 281 ISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT 360 (446)
Q Consensus 281 l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~ 360 (446)
|..-..++++....+-..|+-..|-.+-+-.+..+...++.+|.--..+ +.+.++.|--.++...|-.+-+.+|..+..
T Consensus 398 LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~-d~~l~~~~~p~~va~~LnalSKWPd~p~c~ 476 (2710)
T PRK14707 398 LAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAH-DTELCKALDPINVTQALDALSKWPDTPICG 476 (2710)
T ss_pred HHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-cHHHHhhcChHHHHHHHHHhhcCCCChhHH
Confidence 7766567777777776666666666666678888888888888766554 566666655555555555666778887776
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHH-HHHHHHHHHHhc
Q 043676 361 VCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEI-HEKSVKIFKTYW 425 (446)
Q Consensus 361 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v-~~~a~~~l~~~~ 425 (446)
.+.+.|..-+..... .++.|.-.+....|..|-.-++... .+.+.++..+..
T Consensus 477 ~aa~~La~~l~~~~~-------------l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~ 529 (2710)
T PRK14707 477 QTASALAARLAHERR-------------LRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVV 529 (2710)
T ss_pred HHHHHHHHHhcccHH-------------HHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Confidence 666666654443333 2456665666666777777666443 344455555554
No 191
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.42 E-value=0.53 Score=40.54 Aligned_cols=226 Identities=15% Similarity=0.119 Sum_probs=135.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc-cccchhHHHHHHHHHHHhhcCCCCCChhh
Q 043676 91 PIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN-EHAKLSMLRNATRTLSNFCRGKPEPPFDQ 169 (446)
Q Consensus 91 ~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 169 (446)
+.|-..|.++++.+|..++.+|+.+...-+.. .....-+..++..+. +-.|......++.++..+..... .....
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~-~~~~~ 77 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN-FSPES 77 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC-CChhh
Confidence 34556788899999999999999888655431 112222455555442 11355556666777777774432 11222
Q ss_pred hhhhHHHHHHhhc--CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHHhhcCCc
Q 043676 170 VRPALPALAQLVH--SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGNIVTGDD 246 (446)
Q Consensus 170 ~~~~~~~l~~ll~--~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~ 246 (446)
...++..+.+-.. .--...|..+...+..+..+...... -...+++..+++.+.. .||+-...+...+..+....+
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 3333444433222 22467888888899888876544332 2233677888888876 577777777777776665433
Q ss_pred hhhHHHHhcCChHHHHHHhc--------cCc-h--HHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcch
Q 043676 247 FQTQCIINHGAVPYLLDMLV--------HNH-E--EIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDT 315 (446)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~l~--------~~~-~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 315 (446)
- ....+.+.+.+. .+. + .-.++.-...|.++...++... .-.+|.|++-|.++.+.+
T Consensus 157 ~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~ 224 (262)
T PF14500_consen 157 I-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSV 224 (262)
T ss_pred c-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHH
Confidence 1 223334444331 111 1 1233444455555545444332 247899999999999999
Q ss_pred HHHHHHHHHHhccCCCHH
Q 043676 316 KKEAAWAISNATSGGTQE 333 (446)
Q Consensus 316 ~~~a~~aL~~l~~~~~~~ 333 (446)
|..++.+|..++..-+..
T Consensus 225 K~D~L~tL~~c~~~y~~~ 242 (262)
T PF14500_consen 225 KLDSLQTLKACIENYGAD 242 (262)
T ss_pred HHHHHHHHHHHHHHCCHH
Confidence 999999999887754433
No 192
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.39 E-value=0.1 Score=44.05 Aligned_cols=101 Identities=11% Similarity=0.078 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcc
Q 043676 273 IKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN-AEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLL 351 (446)
Q Consensus 273 v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll 351 (446)
....|+..|.-++--.+..+..+-+...+..+++++.. ..+.++..++.+|..+... ++.+.+.|.+.+++..++.++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld-~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLD-SPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHc-ChHHHHHHHHhCCHHHHHHHH
Confidence 44556677777776667777888888999999999954 5789999999999988776 577888889999999999999
Q ss_pred cCC--CHHHHHHHHHHHHHHHHhhh
Q 043676 352 LCS--DPEIVTVCLIGLENILKVGE 374 (446)
Q Consensus 352 ~~~--~~~~~~~~~~~l~~l~~~~~ 374 (446)
++. +.+++.++++.|.-++....
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~E~ 210 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMPET 210 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHcccC
Confidence 765 57899999999987665433
No 193
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.31 E-value=0.071 Score=45.05 Aligned_cols=101 Identities=17% Similarity=0.135 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHH
Q 043676 16 NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVK 95 (446)
Q Consensus 16 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 95 (446)
......|+..|.-++--. ++....+.+...+..++.+|.....+.++..++.+|..+..+++.+...+-+.+++..++.
T Consensus 105 ~~li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ 183 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS 183 (257)
T ss_pred hHHHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence 334556778888776654 5666777788999999999965544899999999999998889999999999999999999
Q ss_pred hhCC--CCHHHHHHHHHHHHHhhC
Q 043676 96 LLSS--PSDDVREQAVWALGNVAG 117 (446)
Q Consensus 96 ~L~~--~~~~v~~~a~~~l~~l~~ 117 (446)
++++ .+.+++-.++.+|.-+..
T Consensus 184 llk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 184 LLKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HHccccccHHHhHHHHHHHHHHHc
Confidence 9987 457888888887766653
No 194
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=1.2 Score=43.27 Aligned_cols=275 Identities=15% Similarity=0.090 Sum_probs=151.6
Q ss_pred CChHHHHHhhc-C-------CCHHHHHHHHHHHHHHhc--CCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHH
Q 043676 2 GSFPALVAGVW-S-------DDNSLQLEATTLSRKLLS--FDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLI 71 (446)
Q Consensus 2 ~~i~~l~~~l~-s-------~~~~~~~~a~~~l~~l~~--~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~ 71 (446)
|.++-+...|+ + +++.....|++.++++.+ .. ..+..-+.+.-+++.++..++++. --++.+|+..+.
T Consensus 408 giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk-~sp~an~me~fiv~hv~P~f~s~y-gfL~Srace~is 485 (970)
T COG5656 408 GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITK-MSPAANVMEYFIVNHVIPAFRSNY-GFLKSRACEFIS 485 (970)
T ss_pred hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhhHhhcCcc-cchHHHHHHHHH
Confidence 55667777773 1 245556667777777665 22 445566666677888888888888 688999999999
Q ss_pred HHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc--cccchhHHH
Q 043676 72 NIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN--EHAKLSMLR 149 (446)
Q Consensus 72 ~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~~~~ 149 (446)
.+.. +.+..-+-..+.+....++++.+-.++..|+.++.-+..+. .....+.+ .+.+.+-++|. +.-+.+...
T Consensus 486 ~~ee---Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~-q~h~k~sa-hVp~tmekLLsLSn~feiD~LS 560 (970)
T COG5656 486 TIEE---DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE-QSHEKFSA-HVPETMEKLLSLSNTFEIDPLS 560 (970)
T ss_pred HHHH---hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch-hhhHHHHh-hhhHHHHHHHHhcccccchHHH
Confidence 9944 33333333345667777888878888888888888777544 23333322 22222222321 233444444
Q ss_pred HHHHHHHH-hhcCCCCCChhhhhhh----HHHHHHhhcCC------CHhHHHHHHHHHHHhc------cCCcHHHHHHHH
Q 043676 150 NATRTLSN-FCRGKPEPPFDQVRPA----LPALAQLVHSN------DEDVLTYACWSLSYLA------DGTNDKIQAVIE 212 (446)
Q Consensus 150 ~a~~~L~~-l~~~~~~~~~~~~~~~----~~~l~~ll~~~------~~~v~~~~~~~l~~l~------~~~~~~~~~~~~ 212 (446)
.+...+.. +++.-..-........ +.....++.++ .++-+..|.+.|..+. .+.+...+ -..
T Consensus 561 ~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk-~le 639 (970)
T COG5656 561 MVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLK-YLE 639 (970)
T ss_pred HHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHH-HHH
Confidence 44444332 2222111111111222 22233333322 1233334444443332 22222222 233
Q ss_pred hCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc
Q 043676 213 AGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA 286 (446)
Q Consensus 213 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 286 (446)
....|.+--.+++...+.-..|+..+-+.+....+.. -+.-|+.+.+.+++.++.....-.+++-++.|+..
T Consensus 640 ~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~--pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfit 711 (970)
T COG5656 640 VSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIE--PIMWGIFELLLNLLIDEITAVYSEEVADALDNFIT 711 (970)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhh--hhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence 3556666666777777778888888877664332221 11235666677777766223666788888999865
No 195
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.27 E-value=1.1 Score=42.57 Aligned_cols=286 Identities=14% Similarity=0.112 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHH
Q 043676 16 NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVK 95 (446)
Q Consensus 16 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 95 (446)
-..|..++..++.....-+......+.. .--.++......+.|..+...|..+.......-. ... ..+..
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~~iW~-----~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R----~~fF~ 73 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIEEIWY-----AAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMR----AEFFR 73 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHH-----HHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHH----HHHHH
Confidence 3457778888877665432222333222 2235666665578899999888888873322111 111 11122
Q ss_pred hhC-CCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcccc--------------------------chhHH
Q 043676 96 LLS-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA--------------------------KLSML 148 (446)
Q Consensus 96 ~L~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--------------------------~~~~~ 148 (446)
.+. ...++....-+.+|..|+.+.... ..++.+..+.+...+.... +....
T Consensus 74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l 151 (464)
T PF11864_consen 74 DISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNL 151 (464)
T ss_pred HHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhH
Confidence 222 233333344455666666544433 2235556666666552111 22334
Q ss_pred HHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhc-CCCHhHHHHHHHHHHHhccC---CcHHHHHHHHhCcHHHHHHhc
Q 043676 149 RNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVH-SNDEDVLTYACWSLSYLADG---TNDKIQAVIEAGVCPRLVELL 223 (446)
Q Consensus 149 ~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~-~~~~~v~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~l~~ll 223 (446)
...+..+.++.... .........+++..++.+.. +.++.....++..+-.+... +++... .++..|....
T Consensus 152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~ 226 (464)
T PF11864_consen 152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIV 226 (464)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHh
Confidence 45555555555554 22333444555665555543 23444445555555554432 111111 2333343332
Q ss_pred CCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccC-----chHHHHHHHHHHHHHHhcCCHH-HHHHHHH
Q 043676 224 GHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHN-----HEEIIKKEISWIISNITAGNRE-QIQAVID 297 (446)
Q Consensus 224 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~ 297 (446)
+..+....+-.++.||+...-... .+..|..+|.++ .+..+...|+..+..+..+..+ ....+--
T Consensus 227 --~~~~l~~~~w~~m~nL~~S~~g~~-------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~ 297 (464)
T PF11864_consen 227 --NSVSLCKPSWRTMRNLLKSHLGHS-------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPF 297 (464)
T ss_pred --cccccchhHHHHHHHHHcCccHHH-------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecc
Confidence 333677788889999986443222 356677777322 1345666788888888765422 2222212
Q ss_pred cC--ChHHHHHHHhcCCcchHHHHHHHHHHhc
Q 043676 298 AG--LIRPIVNLLQNAEFDTKKEAAWAISNAT 327 (446)
Q Consensus 298 ~~--~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 327 (446)
.- +++.+...++.+++.+-...+..+.++.
T Consensus 298 ~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 298 SPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred cHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 22 7888888888888888888888888887
No 196
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.27 E-value=0.28 Score=46.91 Aligned_cols=179 Identities=14% Similarity=0.146 Sum_probs=122.4
Q ss_pred hhhHHHHHHhhcC----CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC-CCCccchhHHHHHHHHhhcCC
Q 043676 171 RPALPALAQLVHS----NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLTPALRTVGNIVTGD 245 (446)
Q Consensus 171 ~~~~~~l~~ll~~----~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~~~~~a~~~l~~l~~~~ 245 (446)
..+-|.+.....+ +|+.++..|--++..+..-+.+... .-+|.++..+. +++|.+|..|.-.++.++...
T Consensus 891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcf 965 (1128)
T COG5098 891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCF 965 (1128)
T ss_pred hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceeh
Confidence 4445555555554 5899999988888877654443333 55788888887 699999999999998887544
Q ss_pred chhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHH
Q 043676 246 DFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISN 325 (446)
Q Consensus 246 ~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 325 (446)
....+. .-..+..-|.+. +..||..+..++.++...+.- --.|-++.+..++.+++.++...|-..+..
T Consensus 966 N~~~de-----~t~yLyrrL~De-~~~V~rtclmti~fLilagq~-----KVKGqlg~ma~~L~deda~Isdmar~fft~ 1034 (1128)
T COG5098 966 NTTADE-----HTHYLYRRLGDE-DADVRRTCLMTIHFLILAGQL-----KVKGQLGKMALLLTDEDAEISDMARHFFTQ 1034 (1128)
T ss_pred hhhhHH-----HHHHHHHHhcch-hhHHHHHHHHHHHHHHHccce-----eeccchhhhHhhccCCcchHHHHHHHHHHH
Confidence 333332 345678888888 999999999999998764322 123778899999999999999999999999
Q ss_pred hccCCCHHHHHHHHHcCChHHHHhcccC---CCHHHHHHHHHHHHHHHHh
Q 043676 326 ATSGGTQEQIKHLVREGCVKPLCDLLLC---SDPEIVTVCLIGLENILKV 372 (446)
Q Consensus 326 l~~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~~~~~~~~~l~~l~~~ 372 (446)
++...+ . +-.|+++.+-.+-++ ++.+ -...++.|..+++.
T Consensus 1035 ~a~KdN---t---~yn~fidifs~ls~~ae~g~e~-fk~II~FLt~fI~k 1077 (1128)
T COG5098 1035 IAKKDN---T---MYNGFIDIFSTLSSDAENGQEP-FKLIIGFLTDFISK 1077 (1128)
T ss_pred HHhccc---c---hhhhhHHHHHHcCchhhcCCCc-HHHHHHHHHHHHHH
Confidence 987532 1 112334433333221 2222 34556666666654
No 197
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.24 E-value=0.28 Score=47.01 Aligned_cols=105 Identities=16% Similarity=0.149 Sum_probs=78.5
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676 45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD 124 (446)
Q Consensus 45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~ 124 (446)
+.+..+++...+++ ..+|..++..|..+.... ..+..-+-.+....+..-+.+..+.||..|+.+|+.+=.+...-
T Consensus 85 ~~f~hlLRg~Eskd-k~VRfrvlqila~l~d~~-~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de-- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKD-KKVRFRVLQILALLSDEN-AEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE-- 160 (892)
T ss_pred HHHHHHHhcccCcc-hhHHHHHHHHHHHHhccc-cccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--
Confidence 66777888888888 799999999999998733 33333334466777777788889999999999999987332110
Q ss_pred HHHHcCChHHHHHHhccccchhHHHHHHHHHH
Q 043676 125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLS 156 (446)
Q Consensus 125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~ 156 (446)
+..++..+..+++.++++++++.++..+.
T Consensus 161 ---e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 ---ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred ---cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 22356788888988999999998875544
No 198
>PRK14707 hypothetical protein; Provisional
Probab=96.23 E-value=2.5 Score=46.35 Aligned_cols=395 Identities=15% Similarity=0.084 Sum_probs=201.3
Q ss_pred HHHHHhhc--CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC-CCChHHHHHHHHHHHHHcCCChhhH
Q 043676 5 PALVAGVW--SDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMR-EDYPQLQYEAAWVLINIASGTSENT 81 (446)
Q Consensus 5 ~~l~~~l~--s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~ 81 (446)
..+++..+ .+++.-+..+......+++. ......+ +...+..++..+.. +++++-+. ++..|..........+
T Consensus 166 ~lllNafSKw~~~~~c~~aa~~la~~~~~~--d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~-aa~~la~~l~~~~~l~ 241 (2710)
T PRK14707 166 SLALNAFSKWSDNPDCQAVAPRFAALVASD--DRLRSAM-DAQGVATVLNALCKWPDTPDCGN-AVSALAERLADESRLR 241 (2710)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhcCC--hhhhccc-chHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHcCcHHHH
Confidence 34455444 34555555554444443343 2223333 33345555555443 44345444 4444544444356666
Q ss_pred HHHHhcCChHHHHHhhCC-CCHHHHHHHHHHH-HHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHH-h
Q 043676 82 NVVIDHGAVPIFVKLLSS-PSDDVREQAVWAL-GNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSN-F 158 (446)
Q Consensus 82 ~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l-~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~-l 158 (446)
..+-.+| +-..+..|.. ++..+-..+...+ ..++ ..+..+..+-.. .+...++-|.+-++..+...+...|.. |
T Consensus 242 ~~~~~q~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~l~~al~~q-~vanalNalSKwpd~~vc~~Aa~~la~rl 318 (2710)
T PRK14707 242 NELKPQE-LGNALNALSKWADTPVCAAAASALAERLV-DDPGLRKALDPI-NVTQALNALSKWADLPVCAEAAIALAERL 318 (2710)
T ss_pred HhCChHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHh-hhHHHHHhcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHHH
Confidence 6655555 4444444444 6655555554444 4554 444444443322 345556666677777766666655554 4
Q ss_pred hcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCccchhHHHHH
Q 043676 159 CRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRT 237 (446)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~ 237 (446)
..+..........++-..|-.+-+=+|..+...+..+|..-...++...+.+-- ..+...+.-+.. ++..+-..|...
T Consensus 319 ~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~-q~~a~~lNalsKWp~~~~c~~aa~~ 397 (2710)
T PRK14707 319 ADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEP-QGVSSVLNALSKWPDTPVCAAAASA 397 (2710)
T ss_pred hccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccch-hHHHHHHhhhhcCCCchHHHHHHHH
Confidence 443322222222333334444444445444444444444433333434433333 334444444444 666666666666
Q ss_pred HHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHH
Q 043676 238 VGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKK 317 (446)
Q Consensus 238 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~ 317 (446)
|..=....++..+.+-..|+-..|-.+-+-+ +..+...++..|.--..++.+..+.+--.++...|-.+-+-.|..+..
T Consensus 398 LA~~l~~d~~l~~~~~~Q~van~lnalsKWP-d~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~ 476 (2710)
T PRK14707 398 LAEHVVDDLELRKGLDPQGVSNALNALAKWP-DLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICG 476 (2710)
T ss_pred HHHHhccChhhhhhcchhhHHHHHHHhhcCC-cchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHH
Confidence 6655555666665444444444444444556 777777777777776667777666555455555555555567778887
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHH-HHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHh
Q 043676 318 EAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEI-VTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEA 396 (446)
Q Consensus 318 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 396 (446)
.++..|..=... +++.++.|--.++...|-.+-+.++... ...+.++-..+.. ... ....|...
T Consensus 477 ~aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~-~~~-------------l~~~~~~~ 541 (2710)
T PRK14707 477 QTASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVD-ELQ-------------LRKAFDAH 541 (2710)
T ss_pred HHHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhcc-chh-------------hhhhhhhH
Confidence 788777654433 4555555544455555666666666543 3333343333331 111 23444444
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHH
Q 043676 397 GGLEKIENLQSHDNNEIHEKSVKIFKT 423 (446)
Q Consensus 397 ~~~~~l~~l~~~~~~~v~~~a~~~l~~ 423 (446)
+....+..+...++.+.-+.+..-|..
T Consensus 542 ~~~~~lnalSKwp~s~~C~~A~~~iA~ 568 (2710)
T PRK14707 542 QVVNTLKALSKWPDKQLCAVAASGLAE 568 (2710)
T ss_pred HHHHHHHhhhcCCchhHHHHHHHHHHH
Confidence 455556666666654443333333333
No 199
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.035 Score=51.40 Aligned_cols=135 Identities=16% Similarity=0.173 Sum_probs=91.9
Q ss_pred HHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh-cCCCCccchhHHHHHHHHhhcCCchhhHHHHh
Q 043676 176 ALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVEL-LGHPSPSVLTPALRTVGNIVTGDDFQTQCIIN 254 (446)
Q Consensus 176 ~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~l-l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~ 254 (446)
.+..++.+.++-+|.....+++.--.... ..+++..+++. +.+.+.++|+.|..+|+-.|..+..
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~------- 585 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD------- 585 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc-------
Confidence 34455555666666655554432111111 12566777777 6778889999999999988875543
Q ss_pred cCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHH
Q 043676 255 HGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQE 333 (446)
Q Consensus 255 ~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 333 (446)
.+...+++|..+.++.||...+.+|+-.|+++... -.+..|-.++.+...-||+.|+.+++-+....+++
T Consensus 586 --~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~ 655 (926)
T COG5116 586 --LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPE 655 (926)
T ss_pred --hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcc
Confidence 45667788877768999999999999988854332 13455666777778889999999998876655443
No 200
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.23 E-value=0.36 Score=46.20 Aligned_cols=156 Identities=19% Similarity=0.173 Sum_probs=110.4
Q ss_pred CHHHHHHhhcC----CCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCh
Q 043676 46 VVPRFVEFLMR----EDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLS-SPSDDVREQAVWALGNVAGDSP 120 (446)
Q Consensus 46 ~~~~L~~ll~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~-~~~~~v~~~a~~~l~~l~~~~~ 120 (446)
+-|...+...+ ++ +.++..|..+|..+..-+.+... .-+|.|+..+. +|+|.+|.+|+..++.+.-.-.
T Consensus 893 F~pvVeE~csn~~~~sd-~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN 966 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSD-EELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN 966 (1128)
T ss_pred hhHHHHHHhccccccCC-HHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence 34444455544 45 89999999999888764444332 23788998887 6999999999999888763221
Q ss_pred HHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhc
Q 043676 121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLA 200 (446)
Q Consensus 121 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~ 200 (446)
...+. .-..+.+.| .+.+..+++.++.++.++.... .....|-++.+..+|.++|..+...|-..+..++
T Consensus 967 ~~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilag----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098 967 TTADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred hhhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence 11111 235667777 6778899999999999987654 3455788999999999999999999988888888
Q ss_pred cCCcHHHHHHHHhCcHHHHHHh
Q 043676 201 DGTNDKIQAVIEAGVCPRLVEL 222 (446)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~l~~l 222 (446)
..+..... |+++.+-.+
T Consensus 1037 ~KdNt~yn-----~fidifs~l 1053 (1128)
T COG5098 1037 KKDNTMYN-----GFIDIFSTL 1053 (1128)
T ss_pred hcccchhh-----hhHHHHHHc
Confidence 65443222 555554433
No 201
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.21 E-value=0.3 Score=44.56 Aligned_cols=150 Identities=13% Similarity=0.178 Sum_probs=103.4
Q ss_pred HHHHHHhc--CCCCCcHHHHHh-cCCHHHHHHhhcCCC--ChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhC
Q 043676 24 TLSRKLLS--FDRNPPIEKVIQ-SGVVPRFVEFLMRED--YPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLS 98 (446)
Q Consensus 24 ~~l~~l~~--~~~~~~~~~~~~-~~~~~~L~~ll~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~ 98 (446)
+.+..+.. .......+.+++ ..+...|..++++.. .+.+-..|+.++..+....|..-..+.+.|.++.+++.+.
T Consensus 82 k~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~ 161 (379)
T PF06025_consen 82 KFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAIT 161 (379)
T ss_pred HHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHh
Confidence 34444444 222344555666 566777777887764 3678889999999999988988899999999999999887
Q ss_pred -C---CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccch------hHHHHHHHHHHHhhcCCCCCChh
Q 043676 99 -S---PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKL------SMLRNATRTLSNFCRGKPEPPFD 168 (446)
Q Consensus 99 -~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~------~~~~~a~~~L~~l~~~~~~~~~~ 168 (446)
. ++.++....-.+++.+|-+.. ..+.+.+.+.++.+++.+.+.... +.....-..+-.|.++.|.-+..
T Consensus 162 ~~~i~~s~e~l~~lP~~l~AicLN~~-Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~ 240 (379)
T PF06025_consen 162 AKGILPSSEVLTSLPNVLSAICLNNR-GLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPD 240 (379)
T ss_pred ccCCCCcHHHHHHHHHHHhHHhcCHH-HHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHH
Confidence 4 678888888899999996554 466777889999999988432211 23334444556667766544433
Q ss_pred hhhhhH
Q 043676 169 QVRPAL 174 (446)
Q Consensus 169 ~~~~~~ 174 (446)
....++
T Consensus 241 i~~~ii 246 (379)
T PF06025_consen 241 IIDAII 246 (379)
T ss_pred HHHHHH
Confidence 333333
No 202
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=96.20 E-value=0.14 Score=50.93 Aligned_cols=192 Identities=15% Similarity=0.102 Sum_probs=130.6
Q ss_pred HHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh-cCCCCccchhHHHHHHHHhhcCCchhhHHHH
Q 043676 175 PALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVEL-LGHPSPSVLTPALRTVGNIVTGDDFQTQCII 253 (446)
Q Consensus 175 ~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~l-l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 253 (446)
+.+..-+.+.++.-|..++..+............ -...+.+..++.. +.+.+..+...++.+|..++..........
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~-~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~- 333 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAKKEIV-KGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY- 333 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccccccc-cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH-
Confidence 3444445567888888998888887765441111 1111333444433 334566778889999999987665543332
Q ss_pred hcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHH
Q 043676 254 NHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQE 333 (446)
Q Consensus 254 ~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 333 (446)
..++++.++.-+... ...++..+..++-.++..++. ..+.+.+...+.++++.++..+...+.......++.
T Consensus 334 ~~~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEK-KSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred HHhhcchHHHHhhhc-cHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 346788899998887 778887777666666542221 136788889999999999999888888877654422
Q ss_pred HHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhh
Q 043676 334 QIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAE 376 (446)
Q Consensus 334 ~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~ 376 (446)
....-.-.++++.++....+.+.+|+..+..++..+.+.....
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence 2222233457888899999999999999999999887765443
No 203
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.19 E-value=0.056 Score=42.56 Aligned_cols=147 Identities=10% Similarity=0.095 Sum_probs=88.6
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676 45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD 124 (446)
Q Consensus 45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~ 124 (446)
.+++.|+++++.+....+|.+++++|+.+..-+|.....+... .+.-. -.+.+......... ........++
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~~~~~~~~~l~-~~~~~~~~ee--- 81 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENSNDESTDISLP-MMGISPSSEE--- 81 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccccccchhhHHh-hccCCCchHH---
Confidence 4678888999888668999999999999998555443322211 11000 01111112211111 1111111222
Q ss_pred HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhc
Q 043676 125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLA 200 (446)
Q Consensus 125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~ 200 (446)
..-..++..+++.|.+..-..-...++.++.++..............++|.++..+++.++..++..+.-|+.+.
T Consensus 82 -~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 -YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred -HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 222335778888885444444555677777777755545557777899999999999887788888777776654
No 204
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.18 E-value=0.0061 Score=32.73 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=25.5
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHcC
Q 043676 46 VVPRFVEFLMREDYPQLQYEAAWVLINIAS 75 (446)
Q Consensus 46 ~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 75 (446)
++|.+++++++++ +++|..|+++|+.++.
T Consensus 1 llp~l~~~l~D~~-~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPS-PEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCC-HHHHHHHHHHHHHHHh
Confidence 3789999999999 9999999999999875
No 205
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.14 E-value=0.012 Score=31.55 Aligned_cols=30 Identities=30% Similarity=0.344 Sum_probs=26.1
Q ss_pred hHHHHHHhhcCCCHhHHHHHHHHHHHhccC
Q 043676 173 ALPALAQLVHSNDEDVLTYACWSLSYLADG 202 (446)
Q Consensus 173 ~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~ 202 (446)
++|.+.++++++++++|..++.+++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999998753
No 206
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.11 E-value=0.48 Score=43.16 Aligned_cols=274 Identities=17% Similarity=0.153 Sum_probs=137.6
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHH-HHHhhCCChHHHH
Q 043676 47 VPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS-PSDDVREQAVWA-LGNVAGDSPRCRD 124 (446)
Q Consensus 47 ~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~-l~~l~~~~~~~~~ 124 (446)
+..+++-+.+.....+|..++--|+.-+. +++.+..+..+|..+.+++.+.+ ++..+...+..+ +.-++.+.+ ...
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence 56666667755547899999998988888 89999999999999999999955 444244444444 444444433 233
Q ss_pred HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh-hhhhhhHHHHHHhhc---------CCCHhHHHHHHH
Q 043676 125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPF-DQVRPALPALAQLVH---------SNDEDVLTYACW 194 (446)
Q Consensus 125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~l~~ll~---------~~~~~v~~~~~~ 194 (446)
.+...+....+++++.-........... .. ..... .........+...+. .....-+..++.
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~--~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall 172 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SS--RKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALL 172 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchh------hh--hhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHH
Confidence 3334444555566663000000000000 00 00000 000011111111110 011222233333
Q ss_pred HHHHhc--------------cCCcHHHHHHHHhCcHHHHHHhcCC----C-------Cc-----cchhHHHHHHHHhhcC
Q 043676 195 SLSYLA--------------DGTNDKIQAVIEAGVCPRLVELLGH----P-------SP-----SVLTPALRTVGNIVTG 244 (446)
Q Consensus 195 ~l~~l~--------------~~~~~~~~~~~~~~~~~~l~~ll~~----~-------~~-----~~~~~a~~~l~~l~~~ 244 (446)
++-.++ ...+.....+.+.|+++.++..+.. . ++ .....++.+|.+.+..
T Consensus 173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~ 252 (361)
T PF07814_consen 173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL 252 (361)
T ss_pred HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence 333331 1112223345566778888888751 1 11 1344577888888876
Q ss_pred CchhhHHHHh--cCChHHHHHH-hccC--chHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH-------h---
Q 043676 245 DDFQTQCIIN--HGAVPYLLDM-LVHN--HEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLL-------Q--- 309 (446)
Q Consensus 245 ~~~~~~~~~~--~~~~~~l~~~-l~~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll-------~--- 309 (446)
+.......+. .+.+...... +... ........+++.+.|++..++.....+...++...+..+. .
T Consensus 253 ~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~ 332 (361)
T PF07814_consen 253 SEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPN 332 (361)
T ss_pred CccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccc
Confidence 6666555552 2333333332 2222 0234456788999999877766655555443322221111 1
Q ss_pred ----cCCcchHHHHHHHHHHhccCC
Q 043676 310 ----NAEFDTKKEAAWAISNATSGG 330 (446)
Q Consensus 310 ----~~~~~v~~~a~~aL~~l~~~~ 330 (446)
....+...-++.++-|++.+.
T Consensus 333 ~~~~~~~~D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 333 YVPEESSFDILILALGLLINLVEHS 357 (361)
T ss_pred cccccccchHHHHHHHhHHHheeeC
Confidence 012345566777777776653
No 207
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=96.09 E-value=0.82 Score=39.48 Aligned_cols=203 Identities=10% Similarity=0.093 Sum_probs=137.9
Q ss_pred HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh---h---hhhhHHHHHHhhcCCCHhHHHHHHHHHH
Q 043676 124 DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFD---Q---VRPALPALAQLVHSNDEDVLTYACWSLS 197 (446)
Q Consensus 124 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~---~~~~~~~l~~ll~~~~~~v~~~~~~~l~ 197 (446)
..+.+.|.+..++..+ ...+.+.+..++.+..++-......... . ....+..++.--.. .+++.-.+-..+.
T Consensus 73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR 150 (342)
T ss_pred HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence 4566788889999988 6677888889999998887765221111 1 13334444443211 3555555544455
Q ss_pred HhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCC----hHHHHHHhccCchHHH
Q 043676 198 YLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGA----VPYLLDMLVHNHEEII 273 (446)
Q Consensus 198 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~----~~~l~~~l~~~~~~~v 273 (446)
....+ +...+.+....-+......++.+.-++...|..+...+.......+..++..+. .+..-.++.++ +.-+
T Consensus 151 Ecirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvt 228 (342)
T KOG1566|consen 151 ECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVT 228 (342)
T ss_pred HHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceeh
Confidence 54444 334555677777888888888888888888998888887655555555554332 33356677777 8999
Q ss_pred HHHHHHHHHHHhcC--CHHHH-HHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCC
Q 043676 274 KKEISWIISNITAG--NREQI-QAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGG 330 (446)
Q Consensus 274 ~~~a~~~l~~l~~~--~~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 330 (446)
+..+...++.+..+ +.... +++-+..-+..++.+|++++..++.+|-....-+..+.
T Consensus 229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 99999999998763 33332 33334467899999999999999999998888776653
No 208
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.05 E-value=0.098 Score=41.12 Aligned_cols=137 Identities=15% Similarity=0.141 Sum_probs=94.8
Q ss_pred CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH-hcCChHHH
Q 043676 183 SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCII-NHGAVPYL 261 (446)
Q Consensus 183 ~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~~~~~l 261 (446)
...+++|..+.-++..+.. ....-...-+-+.+-.++...+.+-...++.++..+....++....++ ..|+.+.+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~----~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l 91 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLD----AAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL 91 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence 3567888888888888742 222223323445555666666666778889999999888888777777 77888889
Q ss_pred HHHhc--cCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CCcc-hHHHHHHHHHHh
Q 043676 262 LDMLV--HNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN-AEFD-TKKEAAWAISNA 326 (446)
Q Consensus 262 ~~~l~--~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~-v~~~a~~aL~~l 326 (446)
..+.. .. +..+...++.+|..-|. +...+..+. ..+++.|-+.++. ++.. +|..|+-+|+.+
T Consensus 92 ~~~~~~~~~-~~~~~~~~lell~aAc~-d~~~r~~I~-~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 92 LPLASRKSK-DRKVQKAALELLSAACI-DKSCRTFIS-KNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHHHH-CTS--HHHHHHHHHHHHHHTT-SHHHHHCCH-HHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHhcccC-CHHHHHHHHHHHHHHHc-cHHHHHHHH-HHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 98888 55 77888888888876653 455444444 4788889898854 4555 788888877653
No 209
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=95.93 E-value=0.89 Score=38.58 Aligned_cols=141 Identities=22% Similarity=0.218 Sum_probs=93.6
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHH
Q 043676 47 VPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126 (446)
Q Consensus 47 ~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 126 (446)
++.|+.-+....+++.+...+..|..++.++..+.. -++..+..+...+....+..+.+.+..+-..++...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 455555344444489999999999999984412222 236777777777777777777778777775554322
Q ss_pred HHcCChHHHHHHh---------ccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhh-cCCCHhHHHHHHHHH
Q 043676 127 LSQGALIPLLAEL---------NEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLV-HSNDEDVLTYACWSL 196 (446)
Q Consensus 127 ~~~~~i~~l~~~l---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll-~~~~~~v~~~~~~~l 196 (446)
+.+..++... ..+...+.......++..+|...|. .-..+++.+..++ ++.++.++..++.++
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 2233343331 1122334445556788888888765 4467788888888 788899999999999
Q ss_pred HHhccC
Q 043676 197 SYLADG 202 (446)
Q Consensus 197 ~~l~~~ 202 (446)
..++..
T Consensus 147 ~~Lc~~ 152 (234)
T PF12530_consen 147 APLCEA 152 (234)
T ss_pred HHHHHH
Confidence 999943
No 210
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.89 E-value=0.29 Score=39.21 Aligned_cols=142 Identities=17% Similarity=0.151 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHcCC-Chh----hHHHHHh-------cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHc
Q 043676 62 LQYEAAWVLINIASG-TSE----NTNVVID-------HGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQ 129 (446)
Q Consensus 62 ~~~~a~~~L~~l~~~-~~~----~~~~~~~-------~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 129 (446)
+|..|+.+|..++.. ++. +...++- ..-...+.-++.++++.+|..|+.++..+-.+...+-...-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 577777777777763 211 1112221 1223445556788999999999999999986653321111111
Q ss_pred C-------------------ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh--hhhhhHHHHHHhhcCCCHhH
Q 043676 130 G-------------------ALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFD--QVRPALPALAQLVHSNDEDV 188 (446)
Q Consensus 130 ~-------------------~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v 188 (446)
. .-..|+..+..+.+..+....+.++..+....|..... ....++..+..++.+.|.++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1 12234455555667888999999999999998655443 34566677777888899999
Q ss_pred HHHHHHHHHHhccCC
Q 043676 189 LTYACWSLSYLADGT 203 (446)
Q Consensus 189 ~~~~~~~l~~l~~~~ 203 (446)
+..++.+++.+....
T Consensus 162 ~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 162 RVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999887543
No 211
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.82 E-value=0.91 Score=41.40 Aligned_cols=275 Identities=19% Similarity=0.198 Sum_probs=139.8
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHH-hhcCCCCCCh
Q 043676 90 VPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSN-FCRGKPEPPF 167 (446)
Q Consensus 90 i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~~ 167 (446)
+..++.-+.+ .+..+|..++.-|+.-+ .++.++..+...|....+++.+...++......++.++.. ++.+......
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~-~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKC-ADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHh-CCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 5666666663 45678888888888888 4567899999999999999999555554344444444444 4444444444
Q ss_pred hhhhhhHHHHHHhhcCC-CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC---------CCCccchhHHHHH
Q 043676 168 DQVRPALPALAQLVHSN-DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLG---------HPSPSVLTPALRT 237 (446)
Q Consensus 168 ~~~~~~~~~l~~ll~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~---------~~~~~~~~~a~~~ 237 (446)
.........+..++... ...+....- .. ......... ...+..+...+. +....-+..|+.+
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~-~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------SS-RKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchh------hh-hhhhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 33455566666766611 000000000 00 000000010 112222222221 1223345556666
Q ss_pred HHHhhc--------------CCchhhHHHHhcCChHHHHHHhcc----Cc-----------hHHHHHHHHHHHHHHhcCC
Q 043676 238 VGNIVT--------------GDDFQTQCIINHGAVPYLLDMLVH----NH-----------EEIIKKEISWIISNITAGN 288 (446)
Q Consensus 238 l~~l~~--------------~~~~~~~~~~~~~~~~~l~~~l~~----~~-----------~~~v~~~a~~~l~~l~~~~ 288 (446)
+..++. ..+...+.+...|+++.++..+.+ .. +...-..+..+|-+.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 666631 011223445566778888888752 10 1112344667777776655
Q ss_pred HHHHHHHHH--cCChHHHH-HHHh---cCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHH---h----ccc---
Q 043676 289 REQIQAVID--AGLIRPIV-NLLQ---NAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLC---D----LLL--- 352 (446)
Q Consensus 289 ~~~~~~~~~--~~~i~~L~-~ll~---~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~---~----ll~--- 352 (446)
.++..++.. .+.++.+. .++. ..-......++..+.|++-+ ++..+..+...++...+. . +..
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~-n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~ 332 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNN-NPSACEEFASPKLGQQLGLIVTSFFCVLSLPN 332 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCC-CccchHhhhhhHhccchHHHHHhhcccccccc
Confidence 555555553 23333332 2222 22344467788888888765 444444444332221111 1 111
Q ss_pred ----CCCHHHHHHHHHHHHHHHHhhh
Q 043676 353 ----CSDPEIVTVCLIGLENILKVGE 374 (446)
Q Consensus 353 ----~~~~~~~~~~~~~l~~l~~~~~ 374 (446)
...-++...+++++.|+++..+
T Consensus 333 ~~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 333 YVPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred cccccccchHHHHHHHhHHHheeeCc
Confidence 1223566677788888776544
No 212
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.81 E-value=0.13 Score=34.02 Aligned_cols=66 Identities=21% Similarity=0.325 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-CcchHHHHHHHHHHhccCCCHHHHHHHHHcC
Q 043676 274 KKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA-EFDTKKEAAWAISNATSGGTQEQIKHLVREG 342 (446)
Q Consensus 274 ~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~ 342 (446)
.+.|+|+++++++ ++.....+.+.++++.++++.... ...+|..|..+|+-++. ..+..+.+.+.|
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence 5689999999975 466777777789999999999854 67899999999999987 566666665544
No 213
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=95.79 E-value=1.2 Score=40.01 Aligned_cols=160 Identities=15% Similarity=0.152 Sum_probs=111.5
Q ss_pred HHHHHHhcCCCCccchhHHHHHHHHhhc-CCchhhHHHHhc-CC-hHHHHHHhccC---ch---------HHHHHHHHHH
Q 043676 216 CPRLVELLGHPSPSVLTPALRTVGNIVT-GDDFQTQCIINH-GA-VPYLLDMLVHN---HE---------EIIKKEISWI 280 (446)
Q Consensus 216 ~~~l~~ll~~~~~~~~~~a~~~l~~l~~-~~~~~~~~~~~~-~~-~~~l~~~l~~~---~~---------~~v~~~a~~~ 280 (446)
++.+...|......+...++..+..++. ........+... ++ .+.+..++... .. +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6778888888888888899999999998 555666666632 22 22344444211 01 1788888766
Q ss_pred HHHHhc-CCHHHHHHHHH-cCChHHHHHHHhcCCcchHHHHHHHHHH-hccCC--CHHHHHHHHHcCChHHHHhcccCCC
Q 043676 281 ISNITA-GNREQIQAVID-AGLIRPIVNLLQNAEFDTKKEAAWAISN-ATSGG--TQEQIKHLVREGCVKPLCDLLLCSD 355 (446)
Q Consensus 281 l~~l~~-~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~-l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~ 355 (446)
+..+.. +++..+..+++ .+.+..+.+-+..+++++....+.++.. +.... .......+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 666655 67777777764 5678888888888888999999999985 43321 2334444556667888999888777
Q ss_pred H----HHHHHHHHHHHHHHHhhhh
Q 043676 356 P----EIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 356 ~----~~~~~~~~~l~~l~~~~~~ 375 (446)
+ .+...+.+.|..++.....
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCc
Confidence 7 8899999999988865443
No 214
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.77 E-value=0.31 Score=48.72 Aligned_cols=187 Identities=12% Similarity=0.068 Sum_probs=130.6
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhh
Q 043676 91 PIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQV 170 (446)
Q Consensus 91 ~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 170 (446)
+.+..-+.++++.-|..++..+........ ........+.+..++.....+.+..+...++.+|..++..-.....-..
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 344445556778888888888888775443 1111112234555566666777888889999999999887644444455
Q ss_pred hhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCc-hhh
Q 043676 171 RPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDD-FQT 249 (446)
Q Consensus 171 ~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~-~~~ 249 (446)
.+..|.+...+......++..+..++-.++.... -....+.+...+++.++..+..+...+.......+ ...
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 6788888888888888888888888776665322 11556788899999999999998777777765443 222
Q ss_pred HHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc
Q 043676 250 QCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA 286 (446)
Q Consensus 250 ~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 286 (446)
..-.-..+++.++....+. +.+||..|..+++-+..
T Consensus 408 ~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK 443 (815)
T ss_pred chhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence 2222345778888888888 89999999988887765
No 215
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.67 E-value=0.7 Score=44.46 Aligned_cols=227 Identities=14% Similarity=0.148 Sum_probs=147.5
Q ss_pred HHHHhcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 043676 39 EKVIQSGVVPRFVEFLMRED-YPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAG 117 (446)
Q Consensus 39 ~~~~~~~~~~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~ 117 (446)
+.++...++|.|+..+...+ ..++....+ -++.... .++ .+.++++.++++...++..+|-.-+.-+-+...
T Consensus 287 e~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~-k~~k~ld-~~e-----yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~ 359 (690)
T KOG1243|consen 287 EEIIASKVLPILLAALEFGDAASDFLTPLF-KLGKDLD-EEE-----YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID 359 (690)
T ss_pred HHHHHHHHHHHHHHHhhccccchhhhhHHH-Hhhhhcc-ccc-----cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh
Confidence 44555566777766665544 122222211 2222222 122 566789999999999999999776666655553
Q ss_pred CChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHH
Q 043676 118 DSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLS 197 (446)
Q Consensus 118 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~ 197 (446)
. ....+.+..+++.+...+ .++++.+++..+.++..++..-..+ ......+..+..+-.+.+..+|....-|++
T Consensus 360 ~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlg 433 (690)
T KOG1243|consen 360 H---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLG 433 (690)
T ss_pred h---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeec
Confidence 2 233455666788888888 7889999999999999887664222 333455566665555667889999988999
Q ss_pred HhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHH
Q 043676 198 YLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEI 277 (446)
Q Consensus 198 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a 277 (446)
.++....... .+.-....+.+-++++-...|..+...+.......+. .-+...+++.+..+..++ +..+|..|
T Consensus 434 ki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~---~~va~kIlp~l~pl~vd~-e~~vr~~a 506 (690)
T KOG1243|consen 434 KIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ---SEVANKILPSLVPLTVDP-EKTVRDTA 506 (690)
T ss_pred ccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccccch---hhhhhhccccccccccCc-ccchhhHH
Confidence 8887643322 2222334455567777777888888887766554332 234456788888888888 78888877
Q ss_pred HHHHHHHh
Q 043676 278 SWIISNIT 285 (446)
Q Consensus 278 ~~~l~~l~ 285 (446)
-.++..+.
T Consensus 507 ~~~i~~fl 514 (690)
T KOG1243|consen 507 EKAIRQFL 514 (690)
T ss_pred HHHHHHHH
Confidence 77766554
No 216
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.57 E-value=0.079 Score=43.29 Aligned_cols=108 Identities=15% Similarity=0.145 Sum_probs=74.6
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC--------CChHHHHHHHHHHHHHcCCC
Q 043676 6 ALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRE--------DYPQLQYEAAWVLINIASGT 77 (446)
Q Consensus 6 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~--------~~~~~~~~a~~~L~~l~~~~ 77 (446)
.+++.+.+..... ..+..|...+........+.+++.|++..|++.|..- ........+++|+..+.. +
T Consensus 70 ~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n-~ 146 (187)
T PF06371_consen 70 WYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN-T 146 (187)
T ss_dssp HHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS-S
T ss_pred HHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc-c
Confidence 4566666554332 3344444444433233467888889999999887631 225789999999999998 5
Q ss_pred hhhHHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 043676 78 SENTNVVID-HGAVPIFVKLLSSPSDDVREQAVWALGNVA 116 (446)
Q Consensus 78 ~~~~~~~~~-~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~ 116 (446)
......++. .+++..+...|.+++..++..++.+|..+|
T Consensus 147 ~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 147 KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 666666665 689999999999999999999999999887
No 217
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.55 E-value=1.9 Score=40.69 Aligned_cols=108 Identities=17% Similarity=0.126 Sum_probs=77.3
Q ss_pred hhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCc
Q 043676 167 FDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDD 246 (446)
Q Consensus 167 ~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~ 246 (446)
.....+.+..++..+.+.+..+|..++..++.++..-.+... .+-.+++..|..-+-+..+.+|..|+.+|+.+-....
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe-~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDE-VLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 344566777777777888999999999999998876554333 3344888888888888999999999999988853222
Q ss_pred hhhHHHHhcCChHHHHHHhccCchHHHHHHHHHH
Q 043676 247 FQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWI 280 (446)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~ 280 (446)
.... .....+..+++..++.+||..|+.-
T Consensus 165 neen-----~~~n~l~~~vqnDPS~EVRr~alln 193 (885)
T COG5218 165 NEEN-----RIVNLLKDIVQNDPSDEVRRLALLN 193 (885)
T ss_pred ChHH-----HHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 1111 1334677777766588899876543
No 218
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=95.54 E-value=3.1 Score=41.92 Aligned_cols=128 Identities=16% Similarity=0.200 Sum_probs=73.7
Q ss_pred chhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 043676 230 VLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQ 309 (446)
Q Consensus 230 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 309 (446)
++..+.-+++++|-..+...+ ..+|.+++-|.......+|.+.+.+++.+|.+... +++ ..+|.+-.-|.
T Consensus 947 vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa----m~d-~YiP~I~~~L~ 1016 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA----MTD-RYIPMIAASLC 1016 (1529)
T ss_pred HHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH----HHH-HhhHHHHHHhc
Confidence 344455555555544433322 24566666665553556666666666666543211 222 57888888888
Q ss_pred cCCcchHHHHHHHHHHhccCCCHHHHHHHHHcC-ChHHHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676 310 NAEFDTKKEAAWAISNATSGGTQEQIKHLVREG-CVKPLCDLLLCSDPEIVTVCLIGLENILKVG 373 (446)
Q Consensus 310 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~-~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 373 (446)
+.++-+|+.+...|.++.+.+ ..+. .| .+-.++--+-+.+++++.-+-..+..++...
T Consensus 1017 Dp~~iVRrqt~ilL~rLLq~~---~vKw---~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQFG---IVKW---NGELFIRFMLALLDANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred CchHHHHHHHHHHHHHHHhhh---hhhc---chhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhc
Confidence 889999999999999997642 1111 11 1111222233456777777776776666543
No 219
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=95.53 E-value=3.1 Score=45.88 Aligned_cols=266 Identities=9% Similarity=0.076 Sum_probs=147.1
Q ss_pred CCCHHHHHHHHHHHHHhhCC---ChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHH
Q 043676 99 SPSDDVREQAVWALGNVAGD---SPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALP 175 (446)
Q Consensus 99 ~~~~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 175 (446)
+++..++..|+..|..++.. .++....-.+...+.++..++....+.++++.++.++.++...... ....+-+
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkSGWk 1223 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKSGWK 1223 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhcCcH
Confidence 35677888888888887731 1222222234456788888887777889999999999998776421 1122333
Q ss_pred HHHHhh----cCCCHhHHHHHHHHHHHhccCCcHHHH----HHHHhCcHHHHHHhcCCC-CccchhHHHHHHHHhhcCC-
Q 043676 176 ALAQLV----HSNDEDVLTYACWSLSYLADGTNDKIQ----AVIEAGVCPRLVELLGHP-SPSVLTPALRTVGNIVTGD- 245 (446)
Q Consensus 176 ~l~~ll----~~~~~~v~~~~~~~l~~l~~~~~~~~~----~~~~~~~~~~l~~ll~~~-~~~~~~~a~~~l~~l~~~~- 245 (446)
.+..++ ...++.+...+..++..+....-.... ..+ ..++..+..+.... +.++-..|+..|++++..-
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F-~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La 1302 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF-TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLA 1302 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH-HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHH
Confidence 333333 455778888888888776543111000 001 14455555555443 3556666666666552100
Q ss_pred ---c-----------------------hhh-----HHHHhcCChHH---HHHHhccCchHHHHHHHHHHHHHHhc-----
Q 043676 246 ---D-----------------------FQT-----QCIINHGAVPY---LLDMLVHNHEEIIKKEISWIISNITA----- 286 (446)
Q Consensus 246 ---~-----------------------~~~-----~~~~~~~~~~~---l~~~l~~~~~~~v~~~a~~~l~~l~~----- 286 (446)
- ... ........++. +..+..++ +.+||..|+.+|-.+..
T Consensus 1303 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1303 EGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred hccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhcc
Confidence 0 000 00001123333 33445556 89999999999888764
Q ss_pred CCHHHHHHHHHcCChHHHHHHHhcC----------------C----------cchHHHHHHHHHHhccCCCHHHHHHHHH
Q 043676 287 GNREQIQAVIDAGLIRPIVNLLQNA----------------E----------FDTKKEAAWAISNATSGGTQEQIKHLVR 340 (446)
Q Consensus 287 ~~~~~~~~~~~~~~i~~L~~ll~~~----------------~----------~~v~~~a~~aL~~l~~~~~~~~~~~l~~ 340 (446)
-+++....+.+ +++-++++.++.. + .+....|+..+.++...- -+....+ -
T Consensus 1382 Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~f-Fd~L~~~-L 1458 (1780)
T PLN03076 1382 FSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKF-YPTVNPL-L 1458 (1780)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHH-H
Confidence 14444455555 5666666655421 0 022233333344443211 1112221 2
Q ss_pred cCChHHHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676 341 EGCVKPLCDLLLCSDPEIVTVCLIGLENILKVG 373 (446)
Q Consensus 341 ~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 373 (446)
.+++..|..++..++..+...+..+|.+++...
T Consensus 1459 ~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~n 1491 (1780)
T PLN03076 1459 KKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNA 1491 (1780)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence 345666777777888889889999999887643
No 220
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.50 E-value=0.84 Score=44.10 Aligned_cols=234 Identities=14% Similarity=0.145 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhh
Q 043676 102 DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLV 181 (446)
Q Consensus 102 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll 181 (446)
+.-+..-+..|.++.-.-| ..+....++++++..+. +..+.-..+-.+..+++.. .........+|.|...+
T Consensus 287 n~qKs~Flk~Ls~~ip~fp---~rv~~~kiLP~L~~el~---n~~~vp~~LP~v~~i~~~~--s~~~~~~~~~p~l~pi~ 358 (700)
T KOG2137|consen 287 NSQKSSFLKGLSKLIPTFP---ARVLFQKILPTLVAELV---NTKMVPIVLPLVLLIAEGL--SQNEFGPKMLPALKPIY 358 (700)
T ss_pred cHHHHHHHHHHHHhhccCC---HHHHHHhhhhHHHHHhc---cccccccccchhhhhhhcc--chhhhhhhhhHHHHHHh
Confidence 3334344444554443333 23444456677776662 2223233333333333332 12223355677777777
Q ss_pred cCC-CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHH
Q 043676 182 HSN-DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPY 260 (446)
Q Consensus 182 ~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 260 (446)
+.. ..++....+.-+--|....+ ...+...+++.|...+++.+..++..++..+...+..-+. ..+...+++.
T Consensus 359 ~~~~~~~~~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~ 432 (700)
T KOG2137|consen 359 SASDPKQALLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPR 432 (700)
T ss_pred ccCCcccchhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHH
Confidence 743 33333333333322332212 1233447889999999999999999999999988875542 3455667888
Q ss_pred HHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHH
Q 043676 261 LLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVR 340 (446)
Q Consensus 261 l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~ 340 (446)
+..+.....+..++..++-+++.++. ......-...+.++.+..+..++.+......+..++...... . ..+..
T Consensus 433 l~~l~~~tt~~~vkvn~L~c~~~l~q----~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~-g-~ev~~ 506 (700)
T KOG2137|consen 433 LKNLAFKTTNLYVKVNVLPCLAGLIQ----RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYS-G-VEVMA 506 (700)
T ss_pred hhcchhcccchHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc-c-eeeeh
Confidence 88775444488999999999998862 112111112455566666677888888888887777654221 1 23345
Q ss_pred cCChHHHHhcccCCC
Q 043676 341 EGCVKPLCDLLLCSD 355 (446)
Q Consensus 341 ~~~i~~L~~ll~~~~ 355 (446)
..++|.++-+.-.+.
T Consensus 507 ~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 507 ENVLPLLIPLSVAPS 521 (700)
T ss_pred hhhhhhhhhhhhccc
Confidence 567888877766554
No 221
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.14 Score=43.83 Aligned_cols=140 Identities=11% Similarity=0.143 Sum_probs=95.4
Q ss_pred HHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHH
Q 043676 216 CPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAV 295 (446)
Q Consensus 216 ~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 295 (446)
+...+..|.+.++.....++..|..|+...++.....++ .++-.+++-+++. ...|-..|+.+++.+...-...+..
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~- 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQ- 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 344667778888988999999999998877765554443 2556677777888 8899999999999987632222222
Q ss_pred HHcCChHHHH-HHHhcC---CcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHH
Q 043676 296 IDAGLIRPIV-NLLQNA---EFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENIL 370 (446)
Q Consensus 296 ~~~~~i~~L~-~ll~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~ 370 (446)
-+..++ .++... +.=++..|-.+|..+..+..+.. +++.|+..+.+.++.++..+.-++.+..
T Consensus 167 ----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 167 ----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred ----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhccccccc
Confidence 223333 333322 34578999999999987654433 4566777788888888887766555543
No 222
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.42 E-value=0.11 Score=34.40 Aligned_cols=67 Identities=19% Similarity=0.108 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcC
Q 043676 19 QLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHG 88 (446)
Q Consensus 19 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 88 (446)
...++|++.++.+. +.-...+.+.++++.++++..+.+...+|-.|..+|+-++. +.+..+.+.+.|
T Consensus 4 lKaaLWaighIgss--~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS--PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC--hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 46799999999885 44455566779999999999876658999999999999998 777777766554
No 223
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.32 Score=45.41 Aligned_cols=153 Identities=15% Similarity=0.084 Sum_probs=99.5
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHh-hcCCCChHHHHHHHHHHHHHcCCChhhHHHHH
Q 043676 7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEF-LMREDYPQLQYEAAWVLINIASGTSENTNVVI 85 (446)
Q Consensus 7 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 85 (446)
+-+++.+.|+-+|......+.-.-.+..+ .+++..|+.. ..+.+ .++|+.|+.+|+-++..++
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~GTgn--------~~vv~~lLh~avsD~n-DDVrRAAViAlGfvc~~D~------- 584 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVGTGN--------LGVVSTLLHYAVSDGN-DDVRRAAVIALGFVCCDDR------- 584 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhcCCc--------chhHhhhheeecccCc-hHHHHHHHHheeeeEecCc-------
Confidence 34566778888888887777643343211 2667777777 55566 7999999999999988544
Q ss_pred hcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC
Q 043676 86 DHGAVPIFVKLLS-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPE 164 (446)
Q Consensus 86 ~~~~i~~L~~~L~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 164 (446)
..+...+++|. +.++.+|...+.+|+-.|.+.... . ++..|-.++ .++..-+++.|+-+++.+......
T Consensus 585 --~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~--~-----a~diL~~L~-~D~~dfVRQ~AmIa~~mIl~Q~n~ 654 (926)
T COG5116 585 --DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK--V-----ATDILEALM-YDTNDFVRQSAMIAVGMILMQCNP 654 (926)
T ss_pred --chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH--H-----HHHHHHHHh-hCcHHHHHHHHHHHHHHHHhhcCc
Confidence 33455556555 478899999999999888554321 1 123333344 667777888888888877666533
Q ss_pred CChhhhhhhHHHHHHhhcCCC
Q 043676 165 PPFDQVRPALPALAQLVHSND 185 (446)
Q Consensus 165 ~~~~~~~~~~~~l~~ll~~~~ 185 (446)
.-.....++...+.+++.+..
T Consensus 655 ~Lnp~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 655 ELNPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred ccChhHHHHHHHHHHHHhhhh
Confidence 333344556666666665443
No 224
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.31 E-value=0.8 Score=42.69 Aligned_cols=156 Identities=13% Similarity=0.093 Sum_probs=110.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCC---hHHHHHHHHHHHHHcCCChhhH
Q 043676 5 PALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDY---PQLQYEAAWVLINIASGTSENT 81 (446)
Q Consensus 5 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~---~~~~~~a~~~L~~l~~~~~~~~ 81 (446)
..+++.+.+++...+..+...+..+..+ ......++...++..|.+++.++.. .++...+++++..+..+.- ..
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d--~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs 162 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLD--PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS 162 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhcccc--HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence 3567888999999999999888876554 5668889999999999999988762 3555556666665554221 11
Q ss_pred HHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 043676 82 NVVIDHGAVPIFVKLLSS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFC 159 (446)
Q Consensus 82 ~~~~~~~~i~~L~~~L~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 159 (446)
-..+...++.....+.+. .+..+-..|+..+-++...++..++.+.+.--+..++..+ +..+..++..|...+..+.
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNALF 241 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHHHH
Confidence 111122233444444432 4566778889999999988887888888888899999999 6777888888887777777
Q ss_pred cCCCC
Q 043676 160 RGKPE 164 (446)
Q Consensus 160 ~~~~~ 164 (446)
...+.
T Consensus 242 ~~a~~ 246 (713)
T KOG2999|consen 242 RKAPD 246 (713)
T ss_pred hhCCh
Confidence 66533
No 225
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.10 E-value=0.45 Score=37.51 Aligned_cols=147 Identities=9% Similarity=0.031 Sum_probs=87.7
Q ss_pred hhhhhHHHHHHhhcCC-CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc-CCCCccchhHHHHHHHHhhcCCc
Q 043676 169 QVRPALPALAQLVHSN-DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLTPALRTVGNIVTGDD 246 (446)
Q Consensus 169 ~~~~~~~~l~~ll~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~~~~~~~~~a~~~l~~l~~~~~ 246 (446)
.....++.|..+++++ +..+|..++++++.+..-++...+..... .+ ..- ...+......... ........
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~---~~~~~~~~~~~~~~~l~-~~~~~~~~- 79 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LD---SKSSENSNDESTDISLP-MMGISPSS- 79 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CC---ccccccccccchhhHHh-hccCCCch-
Confidence 3467788889999876 69999999999999988877555422211 11 000 0111111111111 11111112
Q ss_pred hhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHH
Q 043676 247 FQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISN 325 (446)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 325 (446)
+...-..++..|+.+|+++.-..-...++.++.++... +.....++- .++|.+++.++..++..++...+-|+.
T Consensus 80 ---ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 80 ---EEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred ---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22333346788999998874455555677777777642 223333333 389999999997777888887777776
Q ss_pred hc
Q 043676 326 AT 327 (446)
Q Consensus 326 l~ 327 (446)
+.
T Consensus 155 lv 156 (160)
T PF11865_consen 155 LV 156 (160)
T ss_pred HH
Confidence 64
No 226
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.05 E-value=2.1 Score=37.12 Aligned_cols=201 Identities=9% Similarity=0.052 Sum_probs=133.1
Q ss_pred hhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcH----HHHHHH-HhCcHHHHHHhcCCCC-ccchhHHHHHHHHhhcC
Q 043676 171 RPALPALAQLVHSNDEDVLTYACWSLSYLADGTND----KIQAVI-EAGVCPRLVELLGHPS-PSVLTPALRTVGNIVTG 244 (446)
Q Consensus 171 ~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~----~~~~~~-~~~~~~~l~~ll~~~~-~~~~~~a~~~l~~l~~~ 244 (446)
.+.++.++..+..-+-+.+..++.+..++-...-+ ....+. ...++..++.- ..+ +++.. +|+.+-.=|..
T Consensus 78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL-~cg~mlrEcir 154 (342)
T KOG1566|consen 78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIAL-TCGNMLRECIR 154 (342)
T ss_pred CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHH-HHHHHHHHHHh
Confidence 56678888888888888888888888887643221 111121 12333444433 111 22222 22222222344
Q ss_pred CchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC---hHH-HHHHHhcCCcchHHHHH
Q 043676 245 DDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGL---IRP-IVNLLQNAEFDTKKEAA 320 (446)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~---i~~-L~~ll~~~~~~v~~~a~ 320 (446)
.+...+.++.+.-+.......+.+ ..++...|..+...+.......+..+...+. ++. --.++.+++.-++..+.
T Consensus 155 he~LakiiL~s~~~~~FF~~vq~p-~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~ 233 (342)
T KOG1566|consen 155 HEFLAKIILESTNFEKFFLYVQLP-NFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSL 233 (342)
T ss_pred hHHHHHHHHcchhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHH
Confidence 556677777888888899999888 8888889999888887644555555554332 333 55688899999999999
Q ss_pred HHHHHhccCCC--HHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676 321 WAISNATSGGT--QEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 321 ~aL~~l~~~~~--~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 375 (446)
..++.+..... ....+++.+..-+..+..+|.++...++..|......+.....+
T Consensus 234 kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK 290 (342)
T KOG1566|consen 234 KLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNK 290 (342)
T ss_pred HhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCC
Confidence 99999876432 23344444445688999999999999999988888776655444
No 227
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.99 E-value=0.98 Score=43.49 Aligned_cols=229 Identities=12% Similarity=0.055 Sum_probs=130.8
Q ss_pred HcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC---CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC-
Q 043676 128 SQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP---EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGT- 203 (446)
Q Consensus 128 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~- 203 (446)
+.|++..++..-..-+...+....-..|+.+..... ........-.-|.+..-|+-.+..+|.+|+..+.++-.-.
T Consensus 127 E~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~d 206 (1005)
T KOG1949|consen 127 ENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRD 206 (1005)
T ss_pred hhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCC
Confidence 556666666544333333344444445555544431 1111222333466677788889999999999999886321
Q ss_pred c----HHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcC----ChHHHHHHhccCchHHHHH
Q 043676 204 N----DKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHG----AVPYLLDMLVHNHEEIIKK 275 (446)
Q Consensus 204 ~----~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~----~~~~l~~~l~~~~~~~v~~ 275 (446)
+ +....+++ .-...+.++|.++-+.+|..|..-+....+.. ..++... ++..+..-+..+...+||.
T Consensus 207 pd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f----We~iP~~i~~~ll~kI~d~~a~dt~s~VR~ 281 (1005)
T KOG1949|consen 207 PDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKF----WEMIPPTILIDLLKKITDELAFDTSSDVRC 281 (1005)
T ss_pred CCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH----HHHcCHHHHHHHHHHHHHHhhhccchheeh
Confidence 1 22233343 44677899999999999999887776665421 1222222 3333333333332568888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCC
Q 043676 276 EISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSD 355 (446)
Q Consensus 276 ~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 355 (446)
.....|..+... |..- .+.+ -++|.+-..+.+....||-.+...|..+-.. . ...+..---.+.++.-|..++
T Consensus 282 svf~gl~~~l~n-p~sh-~~le-~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v---r-a~~f~~I~~~d~~l~~L~~d~ 354 (1005)
T KOG1949|consen 282 SVFKGLPMILDN-PLSH-PLLE-QLLPALRYSLHDNSEKVRVAFVDMLLKIKAV---R-AAKFWKICPMDHILVRLETDS 354 (1005)
T ss_pred hHhcCcHHHHcC-ccch-hHHH-HHHHhcchhhhccchhHHHHHHHHHHHHHhh---h-hhhhhccccHHHHHHHHhccc
Confidence 888888888643 3322 2222 2566677778888899999999988877432 1 111111112445555566666
Q ss_pred HHHHHHHHHHHHH
Q 043676 356 PEIVTVCLIGLEN 368 (446)
Q Consensus 356 ~~~~~~~~~~l~~ 368 (446)
.++....+..|-+
T Consensus 355 ~~v~rr~~~li~~ 367 (1005)
T KOG1949|consen 355 RPVSRRLVSLIFN 367 (1005)
T ss_pred cHHHHHHHHHHHH
Confidence 5555544444433
No 228
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.96 E-value=0.34 Score=39.32 Aligned_cols=114 Identities=14% Similarity=0.177 Sum_probs=76.8
Q ss_pred cCCCCccchhHHHHHHHHhhcCCchhhHHHHh----------------cCChHHHHHHhccC-----chHHHHHHHHHHH
Q 043676 223 LGHPSPSVLTPALRTVGNIVTGDDFQTQCIIN----------------HGAVPYLLDMLVHN-----HEEIIKKEISWII 281 (446)
Q Consensus 223 l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~----------------~~~~~~l~~~l~~~-----~~~~v~~~a~~~l 281 (446)
+.+++......++..|+|++.... ....+++ ...+..|+..+..+ ....--...+.++
T Consensus 4 i~~~~~~~adl~~MLLsNlT~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl 82 (192)
T PF04063_consen 4 ITDPKSPLADLACMLLSNLTRSDS-GCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL 82 (192)
T ss_pred ecCCCcchHHHHHHHHHHhccchH-HHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence 334555667778889999988543 3332331 23566777777551 1334456688899
Q ss_pred HHHhcCCHHHHHHHHHc--CC--hHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHH
Q 043676 282 SNITAGNREQIQAVIDA--GL--IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVR 340 (446)
Q Consensus 282 ~~l~~~~~~~~~~~~~~--~~--i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~ 340 (446)
.|++. .++.++.+.+. +. +..|+.++.+.+..-|.-++.+|.|++.. .+.-..+..
T Consensus 83 ~NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd--~~~H~~LL~ 142 (192)
T PF04063_consen 83 ANLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD--TDSHEWLLS 142 (192)
T ss_pred HHhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc--HhHHHHhcC
Confidence 99965 47788888753 34 78888888888778888999999999874 344455544
No 229
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.89 E-value=0.21 Score=34.99 Aligned_cols=84 Identities=10% Similarity=0.142 Sum_probs=63.4
Q ss_pred HHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHH
Q 043676 216 CPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAV 295 (446)
Q Consensus 216 ~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 295 (446)
+...+..+.++.+.+|..++..|..+..... ....-..+++..+...++++ ++.+--.|+.++..++...+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~----- 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPD----- 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChH-----
Confidence 4556677888999999999999999998665 11222345778888999999 999999999999999875554
Q ss_pred HHcCChHHHHHHHhc
Q 043676 296 IDAGLIRPIVNLLQN 310 (446)
Q Consensus 296 ~~~~~i~~L~~ll~~ 310 (446)
.+++.|++...+
T Consensus 77 ---~vl~~L~~~y~~ 88 (92)
T PF10363_consen 77 ---EVLPILLDEYAD 88 (92)
T ss_pred ---HHHHHHHHHHhC
Confidence 256666665543
No 230
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.87 E-value=2.6 Score=40.90 Aligned_cols=138 Identities=14% Similarity=0.141 Sum_probs=95.1
Q ss_pred hhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC-CCCccchhHHHHHHHHhhcCCc
Q 043676 168 DQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLTPALRTVGNIVTGDD 246 (446)
Q Consensus 168 ~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~~~~~a~~~l~~l~~~~~ 246 (446)
.....++|.|...+++.+..+++.++..+..++..-+ ...++.-++|.+..+.. +.+..++..++-|++.+....+
T Consensus 385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD 461 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD 461 (700)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH
Confidence 4457788888899999999999999999999887655 23566678888877733 3677788899999998884222
Q ss_pred hhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcc
Q 043676 247 FQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFD 314 (446)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 314 (446)
. ..-...+..+....+.. ++.+......+..++....... ..++...++|.++.+...+.-.
T Consensus 462 ~----~~v~d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~ 523 (700)
T KOG2137|consen 462 K----AAVLDELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLN 523 (700)
T ss_pred H----HHhHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccccc
Confidence 1 11112344555555566 7888887777777776532322 3344457888888877765433
No 231
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.78 E-value=2.4 Score=36.56 Aligned_cols=225 Identities=13% Similarity=0.057 Sum_probs=127.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC--CCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676 6 ALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMR--EDYPQLQYEAAWVLINIASGTSENTNV 83 (446)
Q Consensus 6 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~~~~~~a~~~L~~l~~~~~~~~~~ 83 (446)
.|=..|.++|+..|..|+..|...+..-.... ....-+..|++++.+ .+ ......++.++..+.....-....
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~----L~~~ev~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~~~~~~~~~ 77 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF----LSRQEVQVLLDFFCSRLDD-HACVQPALKGLLALVKMKNFSPES 77 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh----ccHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHhCcCCChhh
Confidence 34456889999999999999999887642111 111124444444322 23 333444466666666422111111
Q ss_pred HHhcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676 84 VIDHGAVPIFVKLLS--SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG 161 (446)
Q Consensus 84 ~~~~~~i~~L~~~L~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 161 (446)
...++..+.+-.. +.....|..+...+..+.......- .-...+.+..+++.+....||...-.+...+..+...
T Consensus 78 --~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 78 --AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred --HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 1112333333222 2346678888888888875433211 1112345778888887778999888888888888776
Q ss_pred CCCCChhhhhhhHHHHHHhhc-----C-CCH--hHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhH
Q 043676 162 KPEPPFDQVRPALPALAQLVH-----S-NDE--DVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTP 233 (446)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~ll~-----~-~~~--~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 233 (446)
-+. ..........+.-++- . +|+ -.++..-..|.......+. +..-.+|.|++-|.++.+.++..
T Consensus 155 ~~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~-----fa~~~~p~LleKL~s~~~~~K~D 227 (262)
T PF14500_consen 155 FDI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL-----FAPFAFPLLLEKLDSTSPSVKLD 227 (262)
T ss_pred ccc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh-----hHHHHHHHHHHHHcCCCcHHHHH
Confidence 542 2222333333333321 1 122 1233333344443333332 23367899999999999999999
Q ss_pred HHHHHHHhhcCC
Q 043676 234 ALRTVGNIVTGD 245 (446)
Q Consensus 234 a~~~l~~l~~~~ 245 (446)
++.+|...+...
T Consensus 228 ~L~tL~~c~~~y 239 (262)
T PF14500_consen 228 SLQTLKACIENY 239 (262)
T ss_pred HHHHHHHHHHHC
Confidence 999998877543
No 232
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=94.74 E-value=2.5 Score=39.30 Aligned_cols=233 Identities=12% Similarity=0.062 Sum_probs=131.5
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 043676 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP 163 (446)
Q Consensus 84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 163 (446)
.++...+..|+.++.++|+.-|.....++.++.......|..+.. .....+.+.+.......-...++..++.+..+..
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~ 207 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHNGIAELLEILGSIINGFA 207 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence 445566888999999999999999999999887655555555543 2345566666445566677788888888887753
Q ss_pred CCC-hhhhhhhHHHHHHhhcCCC-HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHh
Q 043676 164 EPP-FDQVRPALPALAQLVHSND-EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241 (446)
Q Consensus 164 ~~~-~~~~~~~~~~l~~ll~~~~-~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l 241 (446)
..- .....-....++.+.+... .........++......++.....+ +..++..=-..+..-...-+.-+..+
T Consensus 208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~WP~t~s~Kev~FL~el~~i 282 (409)
T PF01603_consen 208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHWPKTNSQKEVLFLNELEEI 282 (409)
T ss_dssp SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS-SS-HHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCchhHHHHHHHHHHH
Confidence 222 2233344455666666553 3445555666666555555444322 23333332223333233344555555
Q ss_pred hcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHc---CChHHHHHHHhc----C-Cc
Q 043676 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDA---GLIRPIVNLLQN----A-EF 313 (446)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~----~-~~ 313 (446)
....+...-.-+...+...+...+.++ +..|.+.|+.... ++... .++.. .++|.+..-+.. . +.
T Consensus 283 l~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~-----n~~~~-~li~~~~~~i~p~i~~~L~~~~~~HWn~ 355 (409)
T PF01603_consen 283 LEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWN-----NEYFL-SLISQNSRVILPIIFPALYRNSKNHWNQ 355 (409)
T ss_dssp HTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGG-----SHHHH-HHHHCTHHHHHHHHHHHHSSTTSS-SST
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHC-----CHHHH-HHHHhChHHHHHHHHHHHHHHHHHHhhH
Confidence 553332222222334677788888888 8888888775443 22222 22221 256777766543 2 56
Q ss_pred chHHHHHHHHHHhccC
Q 043676 314 DTKKEAAWAISNATSG 329 (446)
Q Consensus 314 ~v~~~a~~aL~~l~~~ 329 (446)
.++..|..++.-+...
T Consensus 356 ~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 356 TVRNLAQNVLKILMEM 371 (409)
T ss_dssp THHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7888888888877654
No 233
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.71 E-value=0.9 Score=36.50 Aligned_cols=144 Identities=15% Similarity=0.176 Sum_probs=87.7
Q ss_pred chhHHHHHHHHhhcC-CchhhH----HHH-h-----cCChHH-HHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043676 230 VLTPALRTVGNIVTG-DDFQTQ----CII-N-----HGAVPY-LLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVID 297 (446)
Q Consensus 230 ~~~~a~~~l~~l~~~-~~~~~~----~~~-~-----~~~~~~-l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 297 (446)
+|..|+.+|..++.. ++.... .++ + ...-+. +--++.++ ++++|..|+.++..+..+........-+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 567777777777765 221111 111 1 112233 44455666 9999999999999998876554443322
Q ss_pred cC-------------------ChHHHHHHHhcC-CcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHH
Q 043676 298 AG-------------------LIRPIVNLLQNA-EFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPE 357 (446)
Q Consensus 298 ~~-------------------~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 357 (446)
.+ +-..|+..++.+ +..+....++++..+.....-+..+.=.-..++..+..++.+.|++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 11 122344445444 6778888999999888764433322101112455566677889999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 043676 358 IVTVCLIGLENILKVGE 374 (446)
Q Consensus 358 ~~~~~~~~l~~l~~~~~ 374 (446)
++..++.++..++...+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999988876543
No 234
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.70 E-value=5.5 Score=40.25 Aligned_cols=241 Identities=16% Similarity=0.212 Sum_probs=145.0
Q ss_pred hhhHHHHHHhhcC-----CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC----CCC----ccchhHHHHH
Q 043676 171 RPALPALAQLVHS-----NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLG----HPS----PSVLTPALRT 237 (446)
Q Consensus 171 ~~~~~~l~~ll~~-----~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~----~~~----~~~~~~a~~~ 237 (446)
.+++..++.++.+ ........++..|...+.... ..+.+.+.+.++.|+..+. .+. ..+.+..+.+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~-NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKV-NRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHH-HHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 4667777777764 245667777777877777644 5556888999999888774 333 4566666666
Q ss_pred HHHhhcCCchh-h---HHHH--------hcCChHHHHHHhccC---chHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Q 043676 238 VGNIVTGDDFQ-T---QCII--------NHGAVPYLLDMLVHN---HEEIIKKEISWIISNITAGNREQIQAVIDAGLIR 302 (446)
Q Consensus 238 l~~l~~~~~~~-~---~~~~--------~~~~~~~l~~~l~~~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~ 302 (446)
+..+....... . .... ....+..+++.+.++ .++.+....+.+|.+++.++++..+.+++ .+.
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--~F~ 272 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--HFK 272 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--HHH
Confidence 66665321110 0 0000 111255666666544 15788889999999999999988887776 334
Q ss_pred HHHHHHhcC--CcchHHHHHHHHHHhccCC-----CHHHHHHHHHcCChHHHHhcccCC--------CHH--------HH
Q 043676 303 PIVNLLQNA--EFDTKKEAAWAISNATSGG-----TQEQIKHLVREGCVKPLCDLLLCS--------DPE--------IV 359 (446)
Q Consensus 303 ~L~~ll~~~--~~~v~~~a~~aL~~l~~~~-----~~~~~~~l~~~~~i~~L~~ll~~~--------~~~--------~~ 359 (446)
+.+++=+-. ...--...+..++.++.+. .......+++.|++...++++... +++ -.
T Consensus 273 p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL 352 (802)
T PF13764_consen 273 PYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL 352 (802)
T ss_pred HhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence 333322211 1111123355666665532 235567778889998888877432 222 22
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhc-CCCHHHHHHHHHHHHHhcCCC
Q 043676 360 TVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQS-HDNNEIHEKSVKIFKTYWCGR 428 (446)
Q Consensus 360 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~~l~~~~~~~ 428 (446)
..++..|.-+....+.. +.+...++++.+..|-. +....|=..|..+|+.+-+.+
T Consensus 353 p~iL~lL~GLa~gh~~t--------------Q~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 353 PYILRLLRGLARGHEPT--------------QLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred HHHHHHHHHHHhcCHHH--------------HHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 34566666655544332 23345677888877744 336677788888888776633
No 235
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=94.68 E-value=1.8 Score=35.29 Aligned_cols=146 Identities=16% Similarity=0.142 Sum_probs=92.9
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV 83 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 83 (446)
++.+++...+++..++..|+..+.-+....--.+. ..+|.++.+..+++ +.++..|...+..+....+.....
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~------~cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK------QCVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH------HHHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHHH
Confidence 46677778899999999999999987775522232 36999999999999 999999999999998866555444
Q ss_pred HHhcCChHHHHHhh---CCCCH-HH---HHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcccc-------chhHHH
Q 043676 84 VIDHGAVPIFVKLL---SSPSD-DV---REQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA-------KLSMLR 149 (446)
Q Consensus 84 ~~~~~~i~~L~~~L---~~~~~-~v---~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-------~~~~~~ 149 (446)
-...| +..-..+- ..... .. ....+..+..+...+...|..+ +..+++.+.... .+.-..
T Consensus 83 ~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~ 156 (187)
T PF12830_consen 83 RYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLD 156 (187)
T ss_pred HHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHH
Confidence 33334 33333322 11111 11 4555666777776555555554 456777663322 233344
Q ss_pred HHHHHHHHhhcCC
Q 043676 150 NATRTLSNFCRGK 162 (446)
Q Consensus 150 ~a~~~L~~l~~~~ 162 (446)
....+..|++.-+
T Consensus 157 ~~~Fla~nLA~l~ 169 (187)
T PF12830_consen 157 FLLFLAENLATLP 169 (187)
T ss_pred HHHHHHHHHhcCC
Confidence 5555555665543
No 236
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.67 E-value=1.1 Score=44.71 Aligned_cols=195 Identities=18% Similarity=0.205 Sum_probs=117.6
Q ss_pred HHHHHcCCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCCh--HHHHHHhccccch
Q 043676 69 VLINIASGTSENTNVVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL--IPLLAELNEHAKL 145 (446)
Q Consensus 69 ~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i--~~l~~~l~~~~~~ 145 (446)
++.++...+++....+++.|++..+.+.++. ...+++..++..+.|++...+. +........+ ..+-.++.+..+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~-~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLEL-RELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHhhcchh
Confidence 6778888899999999999999999999986 6688999999999999954432 1111111111 1333344333444
Q ss_pred hHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC
Q 043676 146 SMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH 225 (446)
Q Consensus 146 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~ 225 (446)
+.-..++..|..+..+.+. .. ..+. -+.+.+....++...... ........-+.+.+..++..
T Consensus 573 ersY~~~siLa~ll~~~~~-~~--~~~~-----------r~~~~~~l~e~i~~~~~~---~~~~~~~~~f~~~~~~il~~ 635 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEK-TT--ECVF-----------RNSVNELLVEAISRWLTS---EIRVINDRSFFPRILRILRL 635 (699)
T ss_pred hHHHHHHHHHHHHHhCCCc-Cc--cccc-----------hHHHHHHHHHHhhccCcc---ceeehhhhhcchhHHHHhcc
Confidence 6677788888877776532 00 0000 112222222222222211 11111121222214444444
Q ss_pred -CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHH
Q 043676 226 -PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWII 281 (446)
Q Consensus 226 -~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l 281 (446)
..+.....|++++.++...+++..+.+.+.++++.+.+.-.......++..+...+
T Consensus 636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 56677889999999999988888888888899888887765553444555554444
No 237
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.63 E-value=0.74 Score=44.28 Aligned_cols=150 Identities=17% Similarity=0.142 Sum_probs=100.8
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHcC-CCh----hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChH
Q 043676 47 VPRFVEFLMREDYPQLQYEAAWVLINIAS-GTS----ENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR 121 (446)
Q Consensus 47 ~~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~----~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~ 121 (446)
=|.|-+-|+-++ ..+|..|+..+.+..- .+| +..+.+++.. ...+.++|+++-+.+|..|..-++.+.+.-.+
T Consensus 176 ~p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe 253 (1005)
T KOG1949|consen 176 KPILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLEDPYPMVRSTAILGVCKITSKFWE 253 (1005)
T ss_pred hHHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 345556677788 7999999999999774 222 3345555543 67889999999999999998888777633211
Q ss_pred HHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhc
Q 043676 122 CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLA 200 (446)
Q Consensus 122 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~ 200 (446)
.-..-.-...+..+..-+..++..+++......|..+..++. .......++|.+-..+.++...+|..+...|..+-
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~--sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL--SHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc--chhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 100000111233444445455566888888888888887752 22334566778888888889999988888776654
No 238
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.63 E-value=0.54 Score=44.15 Aligned_cols=112 Identities=13% Similarity=0.176 Sum_probs=77.4
Q ss_pred hccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHH
Q 043676 199 LADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEIS 278 (446)
Q Consensus 199 l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~ 278 (446)
.....++... ++. |++..++.-+.+++..+|..++.+|+.+...-. .....+-.+++..+.+-+-+. .+.||.+|+
T Consensus 78 ~~~~dpeg~~-~V~-~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~-eIDe~l~N~L~ekl~~R~~DR-E~~VR~eAv 153 (885)
T COG5218 78 DMPDDPEGEE-LVA-GTFYHLLRGTESKDKKVRKRSLQILALLSDVVR-EIDEVLANGLLEKLSERLFDR-EKAVRREAV 153 (885)
T ss_pred cCCCChhhhH-HHH-HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHhcc-hHHHHHHHH
Confidence 3334443332 443 778888888889999999999999998886443 333455566778888887777 889999999
Q ss_pred HHHHHHhc--CCHHHHHHHHHcCChHHHHHHHhc-CCcchHHHHHH
Q 043676 279 WIISNITA--GNREQIQAVIDAGLIRPIVNLLQN-AEFDTKKEAAW 321 (446)
Q Consensus 279 ~~l~~l~~--~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~ 321 (446)
.+|+.+-. +++++ .+...|..+++. ++.+||..|+.
T Consensus 154 ~~L~~~Qe~~~neen-------~~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 154 KVLCYYQEMELNEEN-------RIVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred HHHHHHHhccCChHH-------HHHHHHHHHHhcCcHHHHHHHHHH
Confidence 99999864 34443 234456666664 35677766553
No 239
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=94.60 E-value=1.2 Score=41.45 Aligned_cols=228 Identities=16% Similarity=0.134 Sum_probs=132.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCCh-----
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTS----- 78 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~----- 78 (446)
+..|+..+.|+|+..|......|.++-.. ....+..+...+...+.+.+.....+.-....+..++.+..+-.
T Consensus 135 i~~Ll~l~~S~D~rER~~lk~~l~~iy~k--~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~ 212 (409)
T PF01603_consen 135 IKKLLELFDSPDPRERDYLKTILHRIYGK--FPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKE 212 (409)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--H
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcH
Confidence 45788899999999999999999887664 34455566666778888888765546677788889999887432
Q ss_pred hhHHHHHhcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHH
Q 043676 79 ENTNVVIDHGAVPIFVKLLSSPS-DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSN 157 (446)
Q Consensus 79 ~~~~~~~~~~~i~~L~~~L~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 157 (446)
++...+ ...++.+.+.+. ......-..++..++..++.....+ +..+++.. ...+..-...-+.-+..
T Consensus 213 eh~~fl-----~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~W-P~t~s~Kev~FL~el~~ 281 (409)
T PF01603_consen 213 EHKQFL-----RKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHW-PKTNSQKEVLFLNELEE 281 (409)
T ss_dssp HHHHHH-----HHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS--SS-HHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhC-CCCCchhHHHHHHHHHH
Confidence 222222 344555555533 2223444455555554444433332 33444444 22333333333444444
Q ss_pred hhcCCCCCCh-hhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHh---CcHHHHHHhcCC-----CCc
Q 043676 158 FCRGKPEPPF-DQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEA---GVCPRLVELLGH-----PSP 228 (446)
Q Consensus 158 l~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~~l~~ll~~-----~~~ 228 (446)
+...-+.... .....+...+..++.+.+..|.+.|+..+.| +... .++.. .+++.+..-+.. =+.
T Consensus 282 il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~-~li~~~~~~i~p~i~~~L~~~~~~HWn~ 355 (409)
T PF01603_consen 282 ILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFL-SLISQNSRVILPIIFPALYRNSKNHWNQ 355 (409)
T ss_dssp HHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHH-HHHHCTHHHHHHHHHHHHSSTTSS-SST
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHH-HHHHhChHHHHHHHHHHHHHHHHHHhhH
Confidence 4443321111 2234566777788889999999998876643 2122 23322 356666666544 145
Q ss_pred cchhHHHHHHHHhhcCCchhhH
Q 043676 229 SVLTPALRTVGNIVTGDDFQTQ 250 (446)
Q Consensus 229 ~~~~~a~~~l~~l~~~~~~~~~ 250 (446)
.++..|..++..+...++...+
T Consensus 356 ~Vr~~a~~vl~~l~~~d~~lf~ 377 (409)
T PF01603_consen 356 TVRNLAQNVLKILMEMDPKLFD 377 (409)
T ss_dssp THHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHH
Confidence 6888899998888887765443
No 240
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.57 E-value=0.44 Score=38.69 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=61.2
Q ss_pred CCHHHHHHhhcC-----CCChHHHHHHHHHHHHHcCCChhhHHHHHhc--CC--hHHHHHhhCCCCHHHHHHHHHHHHHh
Q 043676 45 GVVPRFVEFLMR-----EDYPQLQYEAAWVLINIASGTSENTNVVIDH--GA--VPIFVKLLSSPSDDVREQAVWALGNV 115 (446)
Q Consensus 45 ~~~~~L~~ll~~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~--i~~L~~~L~~~~~~v~~~a~~~l~~l 115 (446)
..+..|++.+.. .+..+--...+.+|.|++. .++.|..+.+. +. +..|+.++.+.+..-|..++.+|.|+
T Consensus 52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNc 130 (192)
T PF04063_consen 52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNC 130 (192)
T ss_pred HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHh
Confidence 356677776655 1224556778899999999 89999999865 44 77888888888888888999999999
Q ss_pred hCCChHHHHHHHH
Q 043676 116 AGDSPRCRDLVLS 128 (446)
Q Consensus 116 ~~~~~~~~~~~~~ 128 (446)
|.+.... ..+..
T Consensus 131 cFd~~~H-~~LL~ 142 (192)
T PF04063_consen 131 CFDTDSH-EWLLS 142 (192)
T ss_pred hccHhHH-HHhcC
Confidence 9766543 34333
No 241
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=94.51 E-value=2 Score=42.71 Aligned_cols=198 Identities=16% Similarity=0.130 Sum_probs=108.4
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCCh-
Q 043676 46 VVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS----PSDDVREQAVWALGNVAGDSP- 120 (446)
Q Consensus 46 ~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~----~~~~v~~~a~~~l~~l~~~~~- 120 (446)
.+..+.+++.+.. --...|...|..+.......... .+..+..+++. .++.++..|+.+++.+....-
T Consensus 396 av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKK--LTDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 3555666666644 11223444444444322122222 35666666664 457788888888887762110
Q ss_pred --------HHHHHHHHcCChHHHHHHhc---cccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC---CH
Q 043676 121 --------RCRDLVLSQGALIPLLAELN---EHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSN---DE 186 (446)
Q Consensus 121 --------~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~---~~ 186 (446)
...........++.+...+. ...+..-+..++.+|+|+-. ...++.+..++... ..
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-H
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccch
Confidence 01111223345667777664 23455777889999999853 24678888888766 68
Q ss_pred hHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHH
Q 043676 187 DVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDM 264 (446)
Q Consensus 187 ~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~ 264 (446)
.+|..|++++..++...+.... +.+.+++.+ .+.++|..|+..|.. .+|... .+..+...
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~v~--------~~l~~I~~n~~e~~EvRiaA~~~lm~---~~P~~~-------~l~~i~~~ 600 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEKVR--------EILLPIFMNTTEDPEVRIAAYLILMR---CNPSPS-------VLQRIAQS 600 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHHHH--------HHHHHHHH-TTS-HHHHHHHHHHHHH---T---HH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHH--------HHHHHHhcCCCCChhHHHHHHHHHHh---cCCCHH-------HHHHHHHH
Confidence 8999999999988777665444 556666655 445677777655532 223222 35667777
Q ss_pred hccCchHHHHHHHH
Q 043676 265 LVHNHEEIIKKEIS 278 (446)
Q Consensus 265 l~~~~~~~v~~~a~ 278 (446)
+..+.+..|.....
T Consensus 601 l~~E~~~QV~sfv~ 614 (618)
T PF01347_consen 601 LWNEPSNQVASFVY 614 (618)
T ss_dssp HTT-S-HHHHHHHH
T ss_pred HhhCchHHHHHHHH
Confidence 77664666655443
No 242
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=94.49 E-value=0.39 Score=36.65 Aligned_cols=75 Identities=9% Similarity=-0.009 Sum_probs=62.9
Q ss_pred ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC------CCHHHHHHHHHHHHHHHHhh
Q 043676 300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC------SDPEIVTVCLIGLENILKVG 373 (446)
Q Consensus 300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~~~~~~~~~l~~l~~~~ 373 (446)
.+..+.+-++++++.++..|+..|-.+..++.......+...+++..|+.++.. .++.|+..++..+.......
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 566677788899999999999999999998888888888888889899999853 56889999999998876544
Q ss_pred h
Q 043676 374 E 374 (446)
Q Consensus 374 ~ 374 (446)
.
T Consensus 119 ~ 119 (139)
T cd03567 119 P 119 (139)
T ss_pred c
Confidence 3
No 243
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.34 E-value=0.33 Score=33.98 Aligned_cols=73 Identities=8% Similarity=0.021 Sum_probs=57.5
Q ss_pred hHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhh
Q 043676 301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAE 376 (446)
Q Consensus 301 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~ 376 (446)
+...+..+.++.+.+|..++..|.++....+ .......+++..+...++++|+-+..+|+++|..+....+..
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 4456677788889999999999999988755 111122346788888999999999999999999998876663
No 244
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=94.25 E-value=5.2 Score=38.09 Aligned_cols=252 Identities=13% Similarity=0.110 Sum_probs=126.2
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHH
Q 043676 15 DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFV 94 (446)
Q Consensus 15 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 94 (446)
..+.|..+...+..+.... ... ....+. .+.+.+..+..++.-..-+.+|..++.+..+. ...+.++.+.|.
T Consensus 42 p~e~R~~~~~ll~~~i~~~-~~~-~~~~R~----~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~ 113 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQ-DSS-SGLMRA----EFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLL 113 (464)
T ss_pred CHHHHHHHHHHHHHHHHcc-ccc-cHHHHH----HHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHH
Confidence 4578888888888877764 221 111121 12222333222333334445555555532222 224556677777
Q ss_pred HhhCCC---------------------------CHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhH
Q 043676 95 KLLSSP---------------------------SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSM 147 (446)
Q Consensus 95 ~~L~~~---------------------------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~ 147 (446)
..+..- +.......+..+.|+...+...-+.-.-.+.+..++.+..+..++..
T Consensus 114 ~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~d 193 (464)
T PF11864_consen 114 SWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDD 193 (464)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHH
Confidence 666320 22233344555555554332211111112244555555434445555
Q ss_pred HHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC-
Q 043676 148 LRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHP- 226 (446)
Q Consensus 148 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~- 226 (446)
...++..+-.+.... .........++..|...... .+....+-.++.||+...... ..+..|..+|.++
T Consensus 194 i~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~--~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~ 263 (464)
T PF11864_consen 194 IEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNS--VSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPD 263 (464)
T ss_pred HHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhcc--cccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccC
Confidence 566777766666553 22223334455555554332 266667777888887643321 3345677777332
Q ss_pred -----CccchhHHHHHHHHhhcCCchhhHHHHh-c--CChHHHHHHhccCchHHHHHHHHHHHHHHh
Q 043676 227 -----SPSVLTPALRTVGNIVTGDDFQTQCIIN-H--GAVPYLLDMLVHNHEEIIKKEISWIISNIT 285 (446)
Q Consensus 227 -----~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~--~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~ 285 (446)
+..+..-|+..+..+..+..+....-+. . -+++.+...++.. +..+-.+....+.++.
T Consensus 264 ~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 264 PQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLL 329 (464)
T ss_pred ccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHH
Confidence 2334456777777776555222221121 1 2667777777766 5566666666666665
No 245
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.13 E-value=3.2 Score=35.24 Aligned_cols=203 Identities=14% Similarity=0.094 Sum_probs=116.5
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHH
Q 043676 133 IPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIE 212 (446)
Q Consensus 133 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~ 212 (446)
+.++.-+.+..+++.+...+.+|..++.+. . .....++..+..+...+......-+.+.+..+...++...
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~---~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f----- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHK---N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF----- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccC---c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-----
Confidence 445555667789999999999999999886 1 3445667778888888777777777777877776655322
Q ss_pred hCcHHHHHHh-----c---CC--CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHh-ccCchHHHHHHHHHHH
Q 043676 213 AGVCPRLVEL-----L---GH--PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDML-VHNHEEIIKKEISWII 281 (446)
Q Consensus 213 ~~~~~~l~~l-----l---~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~v~~~a~~~l 281 (446)
+.+..++.. . .+ ...+.......++..++...+.... .+++.+..++ ++. ++.++..++.++
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~-~~~~~alale~l 146 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSC-DEVAQALALEAL 146 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccc-cHHHHHHHHHHH
Confidence 233333332 1 11 1122333345577777776666332 3567788888 666 888899999999
Q ss_pred HHHhcCCHHHHHHHHHcCChHHHHHHHhcC-CcchHHHHHHHHHHhccCC-CHHHHHHHHHcCChHHHHhcccCCCHH
Q 043676 282 SNITAGNREQIQAVIDAGLIRPIVNLLQNA-EFDTKKEAAWAISNATSGG-TQEQIKHLVREGCVKPLCDLLLCSDPE 357 (446)
Q Consensus 282 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~ 357 (446)
..++...-- .+. .....+..-+..+ .+.+.+..+..+..+.... +.+.... ....++..+.++..+.+.+
T Consensus 147 ~~Lc~~~vv---d~~--s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~-~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 147 APLCEAEVV---DFY--SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEE-LKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred HHHHHHhhc---cHH--HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhH-HHHHHHHHHHhhccccccc
Confidence 999842111 111 1233333333322 4444444333333332221 2222222 2334677777777666543
No 246
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.06 E-value=0.55 Score=37.32 Aligned_cols=114 Identities=14% Similarity=0.119 Sum_probs=78.9
Q ss_pred CcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc---CCHH
Q 043676 214 GVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA---GNRE 290 (446)
Q Consensus 214 ~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~---~~~~ 290 (446)
.+...+..++.++++.-|..++..+...+..++...-.---...+..++.+++.+.+..+++.++.++..+.. +.++
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5667788999999999999999988888876532111111234678889999887677889999999998874 4455
Q ss_pred HHHHHHHc---CChHHHHHHHhcCCcchHHHHHHHHHHhccC
Q 043676 291 QIQAVIDA---GLIRPIVNLLQNAEFDTKKEAAWAISNATSG 329 (446)
Q Consensus 291 ~~~~~~~~---~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 329 (446)
..+.+... ++++.++++++. ......++.+|..+...
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 44444331 345555555543 56777788888877664
No 247
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=94.04 E-value=4.7 Score=36.86 Aligned_cols=148 Identities=13% Similarity=0.091 Sum_probs=89.7
Q ss_pred HHHHhCcHHHHHHhcCCCC-ccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhc----c-CchHHHHHHHHHHHH
Q 043676 209 AVIEAGVCPRLVELLGHPS-PSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLV----H-NHEEIIKKEISWIIS 282 (446)
Q Consensus 209 ~~~~~~~~~~l~~ll~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~----~-~~~~~v~~~a~~~l~ 282 (446)
.+.+.+=.+.+-.-+...+ ..-|..|+..+..++...+.....++ ...+-.++. + ..++.-+..|+..++
T Consensus 205 ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ 280 (370)
T PF08506_consen 205 ELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIG 280 (370)
T ss_dssp HHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHH
T ss_pred HHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHH
Confidence 3555565666666665433 34566788888888875444333222 223333333 2 226778888999999
Q ss_pred HHhcCCHH------------HHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhc
Q 043676 283 NITAGNRE------------QIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDL 350 (446)
Q Consensus 283 ~l~~~~~~------------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l 350 (446)
.++..... ....+....++|.|. --.+..|-++..|++.+..+-..-.++.... +++.++..
T Consensus 281 ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~-----~~~~l~~~ 354 (370)
T PF08506_consen 281 ALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ-----IFPLLVNH 354 (370)
T ss_dssp HHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH-----HHHHHHHH
T ss_pred HHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHH
Confidence 99863211 234455556677665 2223467789999999998877655544333 78999999
Q ss_pred ccCCCHHHHHHHHHHH
Q 043676 351 LLCSDPEIVTVCLIGL 366 (446)
Q Consensus 351 l~~~~~~~~~~~~~~l 366 (446)
|.+++.-|+..|..++
T Consensus 355 L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 355 LQSSSYVVHTYAAIAI 370 (370)
T ss_dssp TTSS-HHHHHHHHHHH
T ss_pred hCCCCcchhhhhhhhC
Confidence 9999998888877654
No 248
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=93.94 E-value=0.3 Score=37.62 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=62.3
Q ss_pred ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcC-CCHHHHHHHHHHH
Q 043676 343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSH-DNNEIHEKSVKIF 421 (446)
Q Consensus 343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~~l 421 (446)
++..|..-+.++++.++..++..|..+++.++.. |...+...++++.|..+... .++.|+++...++
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~------------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li 105 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR------------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVV 105 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 3555666677889999999999999999988875 67888888899999999877 7899999999999
Q ss_pred HHhcCCCC
Q 043676 422 KTYWCGRN 429 (446)
Q Consensus 422 ~~~~~~~~ 429 (446)
..+...-.
T Consensus 106 ~~W~~~f~ 113 (144)
T cd03568 106 KQWADEFK 113 (144)
T ss_pred HHHHHHhC
Confidence 98854443
No 249
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=93.93 E-value=0.33 Score=37.37 Aligned_cols=74 Identities=8% Similarity=0.037 Sum_probs=63.9
Q ss_pred ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC-CCHHHHHHHHHHHHHHHHhh
Q 043676 300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC-SDPEIVTVCLIGLENILKVG 373 (446)
Q Consensus 300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~ 373 (446)
++..+.+-+.++++.++..|+..|-.++.+++......+....++..|..++.. .++.|+..++..+.......
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 566677778889999999999999999999988888888888899999999987 78899999999998876543
No 250
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=93.92 E-value=0.64 Score=35.75 Aligned_cols=75 Identities=11% Similarity=0.046 Sum_probs=63.5
Q ss_pred ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhccc-CCCHHHHHHHHHHHHHHHHhhh
Q 043676 300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL-CSDPEIVTVCLIGLENILKVGE 374 (446)
Q Consensus 300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~ 374 (446)
++..+.+-+.++++.++..|+..|-.+..++.......+...+++..|..++. ..++.|+..++..+........
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 56677788888999999999999999999887777777788889999999886 5678899999999988775443
No 251
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=93.85 E-value=8.4 Score=39.07 Aligned_cols=145 Identities=18% Similarity=0.163 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHH
Q 043676 16 NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVK 95 (446)
Q Consensus 16 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 95 (446)
+-++-.+.-.|++++-.. .. +. ...+|.|++-|...+...+|...+-+++.++.+..... + ..+|.+..
T Consensus 945 ~~vra~~vvTlakmcLah-~~----La-Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~----d-~YiP~I~~ 1013 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAH-DR----LA-KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMT----D-RYIPMIAA 1013 (1529)
T ss_pred hHHHHHHHHHHHHHHhhh-hH----HH-HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHH----H-HhhHHHHH
Confidence 456667777888877653 11 12 14689999988877657788887778888776332222 2 34899999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcC--ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhh
Q 043676 96 LLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQG--ALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPA 173 (446)
Q Consensus 96 ~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~--~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 173 (446)
.|.++++-+|.+++-.|.+|.... .+.=.| .+..++.++ +.+++++..+-.+++.+.... ........+
T Consensus 1014 ~L~Dp~~iVRrqt~ilL~rLLq~~-----~vKw~G~Lf~Rf~l~l~--D~~edIr~~a~f~~~~vL~~~--~P~~f~~~F 1084 (1529)
T KOG0413|consen 1014 SLCDPSVIVRRQTIILLARLLQFG-----IVKWNGELFIRFMLALL--DANEDIRNDAKFYISEVLQSE--EPNFFPLNF 1084 (1529)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhh-----hhhcchhhHHHHHHHHc--ccCHHHHHHHHHHHHHHHhhc--CccchHHHH
Confidence 999999999999999999998432 111112 133344444 567899999999998887764 223344555
Q ss_pred HHHHHHh
Q 043676 174 LPALAQL 180 (446)
Q Consensus 174 ~~~l~~l 180 (446)
++.+..+
T Consensus 1085 Ve~i~~l 1091 (1529)
T KOG0413|consen 1085 VEYIIAL 1091 (1529)
T ss_pred HHHHHHH
Confidence 6655544
No 252
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=93.75 E-value=0.39 Score=43.73 Aligned_cols=149 Identities=14% Similarity=0.121 Sum_probs=87.0
Q ss_pred HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc------CCCHhHHHHHHHHHH
Q 043676 124 DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH------SNDEDVLTYACWSLS 197 (446)
Q Consensus 124 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~------~~~~~v~~~~~~~l~ 197 (446)
..+.+.+-.+.+-+-+..+...+-++.|+..+..++........ .-+...+..++. +.++.-+..|+..++
T Consensus 204 ~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~---~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ 280 (370)
T PF08506_consen 204 EELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVT---SILMQYIQQLLQQYASNPSNNWRSKDGALYLIG 280 (370)
T ss_dssp HHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHH
Confidence 34555566666666664333456677888888889865321111 112223333343 346788888999999
Q ss_pred HhccCCcH------------HHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHh
Q 043676 198 YLADGTND------------KIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDML 265 (446)
Q Consensus 198 ~l~~~~~~------------~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l 265 (446)
.++..... ....++...++|-|. --.+..+-++..|++.+......-+.. .+ .++++.++..|
T Consensus 281 ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~--~l--~~~~~~l~~~L 355 (370)
T PF08506_consen 281 ALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE--QL--LQIFPLLVNHL 355 (370)
T ss_dssp HHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH--HH--HHHHHHHHHHT
T ss_pred HHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH--HH--HHHHHHHHHHh
Confidence 99855421 123355555566555 111244557788998888877644321 22 24789999999
Q ss_pred ccCchHHHHHHHHHHH
Q 043676 266 VHNHEEIIKKEISWII 281 (446)
Q Consensus 266 ~~~~~~~v~~~a~~~l 281 (446)
.++ +.-|+..|+.++
T Consensus 356 ~~~-~~vv~tyAA~~i 370 (370)
T PF08506_consen 356 QSS-SYVVHTYAAIAI 370 (370)
T ss_dssp TSS--HHHHHHHHHHH
T ss_pred CCC-CcchhhhhhhhC
Confidence 999 888888888764
No 253
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.75 E-value=5.1 Score=39.90 Aligned_cols=161 Identities=13% Similarity=0.095 Sum_probs=89.7
Q ss_pred hHHHHHHhcc---ccchhHHHHHHHHHHHhhcCC-C---------CCChhhhhhhHHHHHHhhc----CCCHhHHHHHHH
Q 043676 132 LIPLLAELNE---HAKLSMLRNATRTLSNFCRGK-P---------EPPFDQVRPALPALAQLVH----SNDEDVLTYACW 194 (446)
Q Consensus 132 i~~l~~~l~~---~~~~~~~~~a~~~L~~l~~~~-~---------~~~~~~~~~~~~~l~~ll~----~~~~~v~~~~~~ 194 (446)
+..+..++.. ..++.++..++.+++.+.... . .........+++.+...+. ..+.+-+..++.
T Consensus 433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 512 (618)
T PF01347_consen 433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK 512 (618)
T ss_dssp HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 3445455521 234567777777776665432 1 1122333445555555554 557788889999
Q ss_pred HHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC---CccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhcc-Cch
Q 043676 195 SLSYLADGTNDKIQAVIEAGVCPRLVELLGHP---SPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVH-NHE 270 (446)
Q Consensus 195 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~ 270 (446)
+|+|+... ..++.+..++... +..+|..|++++..++...+... .+.++.++.+ ..+
T Consensus 513 aLgN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~ 573 (618)
T PF01347_consen 513 ALGNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTED 573 (618)
T ss_dssp HHHHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-
T ss_pred HhhccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCC
Confidence 99997532 4567777777765 56688899999998877665433 3556777654 336
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-CcchHHHHHH
Q 043676 271 EIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA-EFDTKKEAAW 321 (446)
Q Consensus 271 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~ 321 (446)
.++|..|...|... +|.. ..+..+...+..+ +..|......
T Consensus 574 ~EvRiaA~~~lm~~---~P~~-------~~l~~i~~~l~~E~~~QV~sfv~S 615 (618)
T PF01347_consen 574 PEVRIAAYLILMRC---NPSP-------SVLQRIAQSLWNEPSNQVASFVYS 615 (618)
T ss_dssp HHHHHHHHHHHHHT------H-------HHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhc---CCCH-------HHHHHHHHHHhhCchHHHHHHHHH
Confidence 78998888777654 1221 1445555666543 4455544433
No 254
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.63 E-value=5.9 Score=36.63 Aligned_cols=132 Identities=14% Similarity=0.152 Sum_probs=93.2
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHcCCC---hhhHHHHHhcCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhCCC
Q 043676 50 FVEFLMREDYPQLQYEAAWVLINIASGT---SENTNVVIDHGAVPIFVKLLSS-------PSDDVREQAVWALGNVAGDS 119 (446)
Q Consensus 50 L~~ll~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~L~~~L~~-------~~~~v~~~a~~~l~~l~~~~ 119 (446)
+..+....+ ++-|..|+-...+.+..+ ..++..+.+.-+.+.+-+++.+ ++.-.+..++.+|..+|+..
T Consensus 16 ~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 16 CLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred HHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 455555555 677888888888888733 3455667777677888888875 23445667778888888554
Q ss_pred hH-HHHHHHHcCChHHHHHHhccccchh------HHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC
Q 043676 120 PR-CRDLVLSQGALIPLLAELNEHAKLS------MLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSN 184 (446)
Q Consensus 120 ~~-~~~~~~~~~~i~~l~~~l~~~~~~~------~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 184 (446)
+- ....+++ .||.++..+.+..+++ +...+..+|..++...+........|.++.+.++-.-.
T Consensus 95 ElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~ 164 (698)
T KOG2611|consen 95 ELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELP 164 (698)
T ss_pred hhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCC
Confidence 32 1223333 5888888886555554 88899999999999877777777789999999876643
No 255
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=93.62 E-value=5.8 Score=36.46 Aligned_cols=307 Identities=14% Similarity=0.117 Sum_probs=158.8
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCCCCc-HHHHHhcCCHHHHHHhhc----C------CCChHHHHHHHHHHHHHcCCChh
Q 043676 11 VWSDDNSLQLEATTLSRKLLSFDRNPP-IEKVIQSGVVPRFVEFLM----R------EDYPQLQYEAAWVLINIASGTSE 79 (446)
Q Consensus 11 l~s~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~~~~~~L~~ll~----~------~~~~~~~~~a~~~L~~l~~~~~~ 79 (446)
|.+++.+-|..|-..|.+......+.+ ...+.+ -++.+++.++ + +...++..+|+++|+.+.. +++
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~ 78 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPE 78 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHH
Confidence 455667778888888887766542222 333322 2555555443 2 1126888999999999987 555
Q ss_pred hHHHHHhcC---ChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc---c-ccchhHHHH
Q 043676 80 NTNVVIDHG---AVPIFVKLLSS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN---E-HAKLSMLRN 150 (446)
Q Consensus 80 ~~~~~~~~~---~i~~L~~~L~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~-~~~~~~~~~ 150 (446)
....+-+.. ++...+..+.+ .+..+....+|+|..--... .++....+..++..+. + -++..+...
T Consensus 79 i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~-----~~~~~~~~~~l~~~l~~i~~~~~s~si~~e 153 (372)
T PF12231_consen 79 IVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSP-----KIMTSDRVERLLAALHNIKNRFPSKSIISE 153 (372)
T ss_pred HHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC-----cccchhhHHHHHHHHHHhhccCCchhHHHH
Confidence 544443221 34555555544 34667777777776533221 1222333444444432 2 346678888
Q ss_pred HHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCc---HHHHH---HHHh----C-----c
Q 043676 151 ATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTN---DKIQA---VIEA----G-----V 215 (446)
Q Consensus 151 a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~---~~~~~---~~~~----~-----~ 215 (446)
.+.++.++....|..-......-+|.++..+-+....++..+..+...+...-+ ..... ..+. + +
T Consensus 154 rL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~ 233 (372)
T PF12231_consen 154 RLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLY 233 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHH
Confidence 889999988876555444445577777777777777888777666655542211 11111 1111 1 2
Q ss_pred HHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc---CCHHHH
Q 043676 216 CPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA---GNREQI 292 (446)
Q Consensus 216 ~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~---~~~~~~ 292 (446)
.+.+..++.+.+......-+|...-+.-+.+.....-.-...+...-..++++ ++.+|..|..+=..+.. .++...
T Consensus 234 ~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~~ 312 (372)
T PF12231_consen 234 CERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELTS 312 (372)
T ss_pred HHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 33355555553333333333332222222221111111122444444566777 88888887655554443 222221
Q ss_pred HHHHHcCChHHHHHHHhcC-Cc----chHHHHHHHHHHhc
Q 043676 293 QAVIDAGLIRPIVNLLQNA-EF----DTKKEAAWAISNAT 327 (446)
Q Consensus 293 ~~~~~~~~i~~L~~ll~~~-~~----~v~~~a~~aL~~l~ 327 (446)
...++. +..++...++.. .. +++..++..++++.
T Consensus 313 ~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 313 PKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 222221 223333334332 33 55666666666654
No 256
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.58 E-value=6.1 Score=36.57 Aligned_cols=129 Identities=13% Similarity=0.058 Sum_probs=89.5
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCCCC--cHHHHHhcCCHHHHHHhhcCCC----C--hHHHHHHHHHHHHHcCCCh
Q 043676 7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNP--PIEKVIQSGVVPRFVEFLMRED----Y--PQLQYEAAWVLINIASGTS 78 (446)
Q Consensus 7 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~~~~~~~L~~ll~~~~----~--~~~~~~a~~~L~~l~~~~~ 78 (446)
+..+++..+.+.|+.|+....++..++.-. ..+.+.+.-+.+.+-+++.+.+ . .-.+..++.+|.-.++ .|
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~-~p 94 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR-VP 94 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC-Ch
Confidence 455666777788999999999988765222 2455777778888888887633 1 2346666677777777 44
Q ss_pred hhH--HHHHhcCChHHHHHhhCC-CC------HHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHh
Q 043676 79 ENT--NVVIDHGAVPIFVKLLSS-PS------DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAEL 139 (446)
Q Consensus 79 ~~~--~~~~~~~~i~~L~~~L~~-~~------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l 139 (446)
+.. ..++ +.||.++.++.. .+ ..+.+.+-.+|..++...+ ....++..|+++.+.++.
T Consensus 95 ElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~-G~~~Lia~G~~~~~~Q~y 161 (698)
T KOG2611|consen 95 ELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEA-GLMTLIASGGLRVIAQMY 161 (698)
T ss_pred hhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCc-hhHHHHhcCchHHHHHHH
Confidence 432 2333 458889988875 22 2377888899999986644 456777899999998776
No 257
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.52 E-value=2.2 Score=42.44 Aligned_cols=315 Identities=15% Similarity=0.101 Sum_probs=158.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHH------Hhc
Q 043676 14 DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVV------IDH 87 (446)
Q Consensus 14 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~------~~~ 87 (446)
+|..+...+++.++.++.. ......+++.+++..|+..=.- ...-.-...||+.+.. .......+ +-.
T Consensus 365 ~d~~l~~~~~k~~~~l~~h--~kfa~~fv~~~gi~kll~vpr~---s~~~~g~s~cly~~~~-~q~~mervc~~p~~v~~ 438 (1516)
T KOG1832|consen 365 DDSPLLPDVMKLICALAAH--RKFAAMFVERRGILKLLAVPRV---SETFYGLSSCLYTIGS-LQGIMERVCALPLVVIH 438 (1516)
T ss_pred ccccccHHHHHHHHHHHHh--hHHHHHHHHhhhhHHHhcCCCc---hhhhhhHHHHHHHHhh-hhhHHHHHhhccHHHHH
Confidence 4556677788888887776 5677888888888877665322 2223333456666665 22222211 122
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc-------c-----------cchhHHH
Q 043676 88 GAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE-------H-----------AKLSMLR 149 (446)
Q Consensus 88 ~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-------~-----------~~~~~~~ 149 (446)
.++..-+.+|......-+.++...+.... .-...-+.+-....+..|+.++.. + .+.++-.
T Consensus 439 ~vv~~~~~l~~cs~~~~~~~~~~ff~~~f-~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~ 517 (1516)
T KOG1832|consen 439 QVVKLAIELLDCSQDQARKNSALFFAAAF-VFRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAF 517 (1516)
T ss_pred HHHHHHHHHHhcchhhccchHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhh
Confidence 44555666666544433333333222111 101112223334456666666521 1 1223444
Q ss_pred HHHHHHHHhhcCC-----CC-CChhhhhhhHHHHHHhhcCC------CHhHHHHHHHHHHHhccCC-------cHHHHHH
Q 043676 150 NATRTLSNFCRGK-----PE-PPFDQVRPALPALAQLVHSN------DEDVLTYACWSLSYLADGT-------NDKIQAV 210 (446)
Q Consensus 150 ~a~~~L~~l~~~~-----~~-~~~~~~~~~~~~l~~ll~~~------~~~v~~~~~~~l~~l~~~~-------~~~~~~~ 210 (446)
..|.+|....... .. +......+..+..+.-+... ..+..+.+++-+..+.... -.....+
T Consensus 518 htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenf 597 (1516)
T KOG1832|consen 518 HTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENF 597 (1516)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHH
Confidence 5555555433221 00 00001111122222222211 1223333444433333222 2334456
Q ss_pred HHhCcHHHHHHhcCC-CCc-------cchhHHHHHHHHhhcCCchhhHHHHhc--------CChHHHHHHhcc---CchH
Q 043676 211 IEAGVCPRLVELLGH-PSP-------SVLTPALRTVGNIVTGDDFQTQCIINH--------GAVPYLLDMLVH---NHEE 271 (446)
Q Consensus 211 ~~~~~~~~l~~ll~~-~~~-------~~~~~a~~~l~~l~~~~~~~~~~~~~~--------~~~~~l~~~l~~---~~~~ 271 (446)
.+.+.+..++.+... +++ +....|+.+|..+..- |.....+.+. .++..++..... ..++
T Consensus 598 lkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dp 676 (1516)
T KOG1832|consen 598 LKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDP 676 (1516)
T ss_pred HHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeecccccccccCH
Confidence 777888888887665 232 2344566666655553 3333334321 133333333221 1167
Q ss_pred HHHHHHHHHHHHHhcCCHHHH-----------------------------------HHHHHcCChHHHHHHHhcCCc---
Q 043676 272 IIKKEISWIISNITAGNREQI-----------------------------------QAVIDAGLIRPIVNLLQNAEF--- 313 (446)
Q Consensus 272 ~v~~~a~~~l~~l~~~~~~~~-----------------------------------~~~~~~~~i~~L~~ll~~~~~--- 313 (446)
+++..|+.+|.|+....|..+ ..+..+++|..|+++++...|
T Consensus 677 ei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~ 756 (1516)
T KOG1832|consen 677 EIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTT 756 (1516)
T ss_pred HHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCc
Confidence 899999999999876432111 122346789999999997654
Q ss_pred --chHHHHHHHHHHhccCCCHHHHHHH
Q 043676 314 --DTKKEAAWAISNATSGGTQEQIKHL 338 (446)
Q Consensus 314 --~v~~~a~~aL~~l~~~~~~~~~~~l 338 (446)
.+|.-|+.+|.-++.. +..++.+
T Consensus 757 aD~IRalAc~~L~GLaR~--~tVrQIl 781 (1516)
T KOG1832|consen 757 ADCIRALACRVLLGLARD--DTVRQIL 781 (1516)
T ss_pred HHHHHHHHHHHHhccccC--cHHHHHH
Confidence 5889999999999885 3444443
No 258
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.49 E-value=0.72 Score=39.74 Aligned_cols=146 Identities=16% Similarity=0.176 Sum_probs=100.8
Q ss_pred hhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhH
Q 043676 171 RPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQ 250 (446)
Q Consensus 171 ~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~ 250 (446)
...+...+..|.+.++......+..|..++...++.....+. .++-.+++-+++....+-..|+.+++.+.........
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667778889999999999999988765544444443 5666777778888888999999999999865444333
Q ss_pred HHHhcCChHHHHHHh-ccC--chHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhc
Q 043676 251 CIINHGAVPYLLDML-VHN--HEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNAT 327 (446)
Q Consensus 251 ~~~~~~~~~~l~~~l-~~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 327 (446)
. -++.++..| ... .+.-+++.|-.+|..+..+-... .+++.|+..+++.++.++..++.+..++.
T Consensus 166 ~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 166 Q-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred H-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 2 233333333 222 14568888989998887642221 36778888899889999988887777665
Q ss_pred cC
Q 043676 328 SG 329 (446)
Q Consensus 328 ~~ 329 (446)
..
T Consensus 234 ~r 235 (334)
T KOG2933|consen 234 IR 235 (334)
T ss_pred ee
Confidence 43
No 259
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=93.45 E-value=16 Score=40.88 Aligned_cols=265 Identities=11% Similarity=0.025 Sum_probs=140.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCC--CCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCCh
Q 043676 13 SDDNSLQLEATTLSRKLLSFDR--NPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAV 90 (446)
Q Consensus 13 s~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 90 (446)
+.+..+...|+..|+.++..-- .+....-.+..++..+..++.+....+++...+.|+.++..... . -+.. +.
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~-nIkS-GW 1222 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---N-NVKS-GW 1222 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---h-hhhc-Cc
Confidence 4567788899998888765320 11111123446788888877766558999999999999886221 2 2233 46
Q ss_pred HHHHHhhC----CCCHHHHHHHHHHHHHhhCCChH-H----HHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhh--
Q 043676 91 PIFVKLLS----SPSDDVREQAVWALGNVAGDSPR-C----RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFC-- 159 (446)
Q Consensus 91 ~~L~~~L~----~~~~~v~~~a~~~l~~l~~~~~~-~----~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~-- 159 (446)
+.+..++. +.++.+...|..++..++.+.-. . ...+. .++..+........+.++--.++..|++++
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence 77777665 46688888888888877643111 0 01111 134444444433334444445555555431
Q ss_pred --cCCC-----------------------CC------ChhhhhhhHHHHHH---hhcCCCHhHHHHHHHHHHHhccC---
Q 043676 160 --RGKP-----------------------EP------PFDQVRPALPALAQ---LVHSNDEDVLTYACWSLSYLADG--- 202 (446)
Q Consensus 160 --~~~~-----------------------~~------~~~~~~~~~~~l~~---ll~~~~~~v~~~~~~~l~~l~~~--- 202 (446)
.... .. ........+|.|.. +..+...+||..|+.+|..+...
T Consensus 1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 1100 00 00011234444443 34567899999999999877633
Q ss_pred --CcHHHHHHHHhCcHHHHHHhcCCC----------------C---cc----chhHHHHHHHHhhcCCchhhHHH--Hhc
Q 043676 203 --TNDKIQAVIEAGVCPRLVELLGHP----------------S---PS----VLTPALRTVGNIVTGDDFQTQCI--INH 255 (446)
Q Consensus 203 --~~~~~~~~~~~~~~~~l~~ll~~~----------------~---~~----~~~~a~~~l~~l~~~~~~~~~~~--~~~ 255 (446)
+++....++. +++-+++..++.. + .+ ....+..++..++.--......+ +-.
T Consensus 1381 ~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~ 1459 (1780)
T PLN03076 1381 LFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK 1459 (1780)
T ss_pred cCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333333 4555555444321 0 00 12223333333332111111111 112
Q ss_pred CChHHHHHHhccCchHHHHHHHHHHHHHHhc
Q 043676 256 GAVPYLLDMLVHNHEEIIKKEISWIISNITA 286 (446)
Q Consensus 256 ~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 286 (446)
+++..+...+..+ +..+-..+..+|.++..
T Consensus 1460 ~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076 1460 KVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred HHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence 3455555556666 77777788888888875
No 260
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=93.30 E-value=6.6 Score=36.12 Aligned_cols=266 Identities=13% Similarity=0.039 Sum_probs=135.3
Q ss_pred CHHHHHHHHHHHHHhhCCChHHHHHHHHcC---ChHHHHHHhc-cccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHH
Q 043676 101 SDDVREQAVWALGNVAGDSPRCRDLVLSQG---ALIPLLAELN-EHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPA 176 (446)
Q Consensus 101 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~---~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 176 (446)
+..+..+|+.+++.+.... .....+.... .+...+..+. ...+..+....+|+|+.=--....-.......++..
T Consensus 59 ~~~L~~qALkll~~~l~~~-~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHP-EIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccH-HHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence 6788899999999888433 2222221111 2344444552 233456667777766642222111111122223333
Q ss_pred HHHhhc-CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCc---hhhH--
Q 043676 177 LAQLVH-SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDD---FQTQ-- 250 (446)
Q Consensus 177 l~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~---~~~~-- 250 (446)
+..+-+ -++..+....+.++.++....+.....-.. ..++.++..+-+....++..|..+...+...-+ ....
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~ 216 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSV 216 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence 333332 456788889999999999877654432221 478888888888778888776665555532111 1111
Q ss_pred -HHHhcC---------ChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCChHHHHHHHhcCCcchHHHH
Q 043676 251 -CIINHG---------AVPYLLDMLVHNHEEIIKKEISWIISNITAGNRE-QIQAVIDAGLIRPIVNLLQNAEFDTKKEA 319 (446)
Q Consensus 251 -~~~~~~---------~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 319 (446)
...+.. +.+.+..++.+. +......-+|...-+..+++. ...... +..+...-..++++++.+|..|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~d~~~k~~A 294 (372)
T PF12231_consen 217 LEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSSDPQVKIQA 294 (372)
T ss_pred HHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCCCHHHHHHH
Confidence 111111 233356666663 222222333433333233221 001111 1244445556677899999999
Q ss_pred HHHHHHhccCC--CHHHHHHHHHcCChHHHHhcccC-CCH----HHHHHHHHHHHHHHH
Q 043676 320 AWAISNATSGG--TQEQIKHLVREGCVKPLCDLLLC-SDP----EIVTVCLIGLENILK 371 (446)
Q Consensus 320 ~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~-~~~----~~~~~~~~~l~~l~~ 371 (446)
..+-..+.... ++........- ...++...++. ..+ ++...++..+.+++.
T Consensus 295 ~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 295 FKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred HHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 99888775421 11111111111 22333333432 223 677777777777764
No 261
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.30 E-value=4.1 Score=40.27 Aligned_cols=163 Identities=9% Similarity=0.054 Sum_probs=83.3
Q ss_pred CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHh-C-------cHHHHHHhcCCCCccchhHHHH
Q 043676 165 PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEA-G-------VCPRLVELLGHPSPSVLTPALR 236 (446)
Q Consensus 165 ~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~-~-------~~~~l~~ll~~~~~~~~~~a~~ 236 (446)
.........+|.++..|+.+..-+..+|+.++-.+.......-..+... . .+..+++.++.+...--+....
T Consensus 491 l~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmK 570 (960)
T KOG1992|consen 491 LGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMK 570 (960)
T ss_pred CChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHH
Confidence 3444557789999999999999999999999987764333211111111 1 2222333344444443444555
Q ss_pred HHHHhhcCCchhhHHHH---hcCChHHHHHHhccCchHHHHHH---HHHHHHH-HhcCCHHHHHHHHHcCChHHHHHHHh
Q 043676 237 TVGNIVTGDDFQTQCII---NHGAVPYLLDMLVHNHEEIIKKE---ISWIISN-ITAGNREQIQAVIDAGLIRPIVNLLQ 309 (446)
Q Consensus 237 ~l~~l~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~~~v~~~---a~~~l~~-l~~~~~~~~~~~~~~~~i~~L~~ll~ 309 (446)
++..+..-.+....... -.++.+.+...-+++.++..-.. +..++-+ .+..++.....+. ...+|.+...+.
T Consensus 571 aImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e-~aL~p~fq~Il~ 649 (960)
T KOG1992|consen 571 AIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLE-EALFPVFQTILS 649 (960)
T ss_pred HHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHH-HHHHHHHHHHHH
Confidence 55555443333221111 11223333344455544443333 3333333 3334444433333 357777777776
Q ss_pred cCCcchHHHHHHHHHHhcc
Q 043676 310 NAEFDTKKEAAWAISNATS 328 (446)
Q Consensus 310 ~~~~~v~~~a~~aL~~l~~ 328 (446)
.+-.+..-.+...++-+..
T Consensus 650 eDI~EfiPYvfQlla~lve 668 (960)
T KOG1992|consen 650 EDIQEFIPYVFQLLAVLVE 668 (960)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6555555566666665544
No 262
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=93.24 E-value=0.49 Score=36.39 Aligned_cols=75 Identities=17% Similarity=0.305 Sum_probs=61.0
Q ss_pred ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhc-CCCHHHHHHHHHHH
Q 043676 343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQS-HDNNEIHEKSVKIF 421 (446)
Q Consensus 343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~~l 421 (446)
++..|..-+.++++.++..|+..|..+++.+... |...+...++++.+..+.. ..++.|++++..++
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~------------fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li 109 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTH------------FHDEVASREFMDELKDLIKTTKNEEVRQKILELI 109 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHH------------HHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 4555666677789999999999999999987554 6788888889999988875 67789999999999
Q ss_pred HHhcCCCC
Q 043676 422 KTYWCGRN 429 (446)
Q Consensus 422 ~~~~~~~~ 429 (446)
..+...-.
T Consensus 110 ~~W~~~f~ 117 (142)
T cd03569 110 QAWALAFR 117 (142)
T ss_pred HHHHHHhC
Confidence 98865443
No 263
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.20 E-value=3.3 Score=43.41 Aligned_cols=241 Identities=16% Similarity=0.112 Sum_probs=122.3
Q ss_pred CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc---c---ccchhHHHHHHHHHHHhhcCC-CCCChhhhhh
Q 043676 100 PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN---E---HAKLSMLRNATRTLSNFCRGK-PEPPFDQVRP 172 (446)
Q Consensus 100 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~---~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~ 172 (446)
+..+++...+.++.++.....+ .... | .+.+.+++. . .....+.+.+..+|.-++.+. +.-......+
T Consensus 854 ~~~evr~~sl~~l~silet~ge---~ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~ 928 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILETVGE---HLLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILD 928 (1610)
T ss_pred ccceeeHHHHHHHHHHHhccch---hhcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHH
Confidence 5567787888888888744322 1111 1 333444332 1 124567888888888888877 6666666778
Q ss_pred hHHHHHHhhcC-CCHhHHHHHHHHHHHhccCCcHHHHHHHH----hCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCch
Q 043676 173 ALPALAQLVHS-NDEDVLTYACWSLSYLADGTNDKIQAVIE----AGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDF 247 (446)
Q Consensus 173 ~~~~l~~ll~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~----~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~ 247 (446)
++..+..+-+. .|..+--.++..++.++..-....+..-+ ...++.+.. ..+...+..+++|++
T Consensus 929 lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s--s~~~~~~l~e~lwi~--------- 997 (1610)
T KOG1848|consen 929 LIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS--SMKSKEILPEVLWIM--------- 997 (1610)
T ss_pred HHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc--cccchhhhhhHHHHH---------
Confidence 88888777663 47777777777777766321111111111 112222221 112222333343332
Q ss_pred hhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhc----------------
Q 043676 248 QTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAVIDAGLIRPIVNLLQN---------------- 310 (446)
Q Consensus 248 ~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~---------------- 310 (446)
++..+.++-.++ ..+||..|+.++-.+.. ++........+.-+...++.+|++
T Consensus 998 ---------ll~~L~~~~~ds-r~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqk 1067 (1610)
T KOG1848|consen 998 ---------LLVHLADLCEDS-RAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQK 1067 (1610)
T ss_pred ---------HHHHHHHHhccc-hHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhh
Confidence 122233333444 56666666666666543 211111112222233444444541
Q ss_pred CCcchHHHHHHHHHHhccCCCHHHHHHHHHc-CC---hHHHH----hcccCCCHHHHHHHHHHHHHHH
Q 043676 311 AEFDTKKEAAWAISNATSGGTQEQIKHLVRE-GC---VKPLC----DLLLCSDPEIVTVCLIGLENIL 370 (446)
Q Consensus 311 ~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~---i~~L~----~ll~~~~~~~~~~~~~~l~~l~ 370 (446)
...+.....+.++..+. +++.+-+... |+ .+.+. .+..+.++++...++.++..+.
T Consensus 1068 qwtet~~ltisgIaklf----~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1068 QWTETSCLTISGIAKLF----SENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred hhhhhhhhhHHHHHHHH----HHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 12233344455555554 3444444432 22 33333 3345678888888888887764
No 264
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.07 E-value=0.43 Score=38.95 Aligned_cols=109 Identities=10% Similarity=0.142 Sum_probs=73.1
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHc-CCChhhHHHHHhcCChHHHHHhhCC---------CCHHHHHHHHHHHHHhh
Q 043676 47 VPRFVEFLMREDYPQLQYEAAWVLINIA-SGTSENTNVVIDHGAVPIFVKLLSS---------PSDDVREQAVWALGNVA 116 (446)
Q Consensus 47 ~~~L~~ll~~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~~i~~L~~~L~~---------~~~~v~~~a~~~l~~l~ 116 (446)
...+++.+.+.. ... ..+..|.... .........|++.||+..|+.+|.. .+......++.++..+.
T Consensus 68 p~~~i~~L~~~~-~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 68 PEWYIKKLKSRP-STS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHTTT---HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccC-ccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 445666676655 222 3333333322 2345678888899999999998863 34578888999999998
Q ss_pred CCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 043676 117 GDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFC 159 (446)
Q Consensus 117 ~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 159 (446)
.........+...+.+..++..+ .+++..++..++..|..+|
T Consensus 145 n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPDSVNLIALSL-DSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 55554444555567788888888 7888999999999998876
No 265
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=92.80 E-value=2.8 Score=31.08 Aligned_cols=103 Identities=13% Similarity=0.167 Sum_probs=64.6
Q ss_pred HhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccc
Q 043676 308 LQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVN 387 (446)
Q Consensus 308 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 387 (446)
..+.+...-.....-|.+++.. ++..... +.+.|.+=|++.++.|+.+++.+|..++..+...
T Consensus 10 Tsdd~~p~pgy~~~Eia~~t~~-s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~----------- 72 (122)
T cd03572 10 TSDDDEPTPGYLYEEIAKLTRK-SVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD----------- 72 (122)
T ss_pred hcCCCCCCchHHHHHHHHHHHc-CHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH-----------
Confidence 3333333333444455555544 3333333 4677888888888999999999999999887644
Q ss_pred hHHHHHH-HhChHHHHHHhhcC--------CCHHHHHHHHHHHHHhcCCC
Q 043676 388 QYAQFVE-EAGGLEKIENLQSH--------DNNEIHEKSVKIFKTYWCGR 428 (446)
Q Consensus 388 ~~~~~l~-~~~~~~~l~~l~~~--------~~~~v~~~a~~~l~~~~~~~ 428 (446)
|...++ .+..+..+.+.... .+..|+..|.+++.-+|..+
T Consensus 73 -f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~~ 121 (122)
T cd03572 73 -FKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSYS 121 (122)
T ss_pred -HHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhccC
Confidence 333333 33344445555442 24578999999999888765
No 266
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.77 E-value=1.7 Score=34.50 Aligned_cols=113 Identities=23% Similarity=0.181 Sum_probs=73.7
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcC--ChHHHHHHhccccchhHHHHHHHHHHHhhcCC---C
Q 043676 89 AVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQG--ALIPLLAELNEHAKLSMLRNATRTLSNFCRGK---P 163 (446)
Q Consensus 89 ~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~--~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~---~ 163 (446)
.+..+..+|+++++.-|-.++..+.-.+..++. +.+.+.+ .+..++..+.+.....+.+.++.++..+.... +
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 456778889998888888888888888865421 2332322 47788888877677888999999998887654 2
Q ss_pred CCChh----hhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcH
Q 043676 164 EPPFD----QVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTND 205 (446)
Q Consensus 164 ~~~~~----~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~ 205 (446)
.-... ....+++.++.+++. ......++.++..+....+.
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 21111 124445555555554 56666777777777655443
No 267
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.76 E-value=11 Score=37.33 Aligned_cols=308 Identities=10% Similarity=0.049 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHH--hcCChHHH
Q 043676 16 NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVI--DHGAVPIF 93 (446)
Q Consensus 16 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L 93 (446)
.-+++..++.+....+....... ..-+-..+++++++.++--++..+++++.-+..+-.-..+.+. -......+
T Consensus 501 RiiRRRVa~ilg~Wvsvq~~~e~----k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~l 576 (978)
T KOG1993|consen 501 RIIRRRVAWILGQWVSVQQKLEL----KPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLL 576 (978)
T ss_pred hHHHHHHHHHHhhhhheechHhH----HHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHH
Confidence 45677777888777664211111 1123455677888875467888888888888763222222221 12344555
Q ss_pred HHhhCC-CCHHHHHHHHHHHHHhhCCChHHH-HHHHHcCChHHHHHHhccc-cchhHHHHHHHHHHHhhcCCCCCChhhh
Q 043676 94 VKLLSS-PSDDVREQAVWALGNVAGDSPRCR-DLVLSQGALIPLLAELNEH-AKLSMLRNATRTLSNFCRGKPEPPFDQV 170 (446)
Q Consensus 94 ~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 170 (446)
.+++.. ..-+.|...+.+++.+.....+.. .... .++..+-.+-..+ ..+-++...+.+|.++...-........
T Consensus 577 fkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~--~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~ 654 (978)
T KOG1993|consen 577 FKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYAS--TIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFY 654 (978)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccch
Confidence 566655 456677778888877774322211 1111 1222222222222 3445666777888888776533333333
Q ss_pred hhhHHHHHHhhcCCC---HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCch
Q 043676 171 RPALPALAQLVHSND---EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDF 247 (446)
Q Consensus 171 ~~~~~~l~~ll~~~~---~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~ 247 (446)
.-.+|.+-....-++ .-+.+.+...-.....+.+.....+. +++|.+...+....+.. ..++.++....--...
T Consensus 655 ~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~ste~L-~t~l~Ii~sYilLd~~ 731 (978)
T KOG1993|consen 655 PFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQSTENL-PTVLMIISSYILLDNT 731 (978)
T ss_pred HHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhhhhhH-HHHHHHHHHHHhhccH
Confidence 334444433332222 22334444333333333332222222 56677777765544332 2334444333221111
Q ss_pred hhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh--cCCcchHHHHHHHHHH
Q 043676 248 QTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQ--NAEFDTKKEAAWAISN 325 (446)
Q Consensus 248 ~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~aL~~ 325 (446)
....-...|+...+..++.+- ..+-....+.++..+...++ ........++++.+..-+- .+.|.+...-+..++.
T Consensus 732 ~fl~~y~~~i~k~~~~~l~dv-r~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaR 809 (978)
T KOG1993|consen 732 VFLNDYAFGIFKKLNDLLDDV-RNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVAR 809 (978)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHH
Confidence 111222346677777777655 44445556666666655544 4455566688888776553 3466777777778877
Q ss_pred hccCCCHHHH
Q 043676 326 ATSGGTQEQI 335 (446)
Q Consensus 326 l~~~~~~~~~ 335 (446)
++-. +++..
T Consensus 810 i~l~-n~~~~ 818 (978)
T KOG1993|consen 810 ISLR-NPSLF 818 (978)
T ss_pred HHhc-ChHHH
Confidence 7665 34433
No 268
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=92.52 E-value=0.98 Score=34.50 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=60.2
Q ss_pred ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcC------CCHHHHHH
Q 043676 343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSH------DNNEIHEK 416 (446)
Q Consensus 343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~------~~~~v~~~ 416 (446)
++..+..-+.++++.++..|+..|..+++.+... |...+...+++..+.++... .++.|+++
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~------------fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~k 106 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGER------------FHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTK 106 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence 4555667778899999999999999999987765 67888888888888888753 57899999
Q ss_pred HHHHHHHhcCCC
Q 043676 417 SVKIFKTYWCGR 428 (446)
Q Consensus 417 a~~~l~~~~~~~ 428 (446)
...++..+-..-
T Consensus 107 il~li~~W~~~f 118 (139)
T cd03567 107 IIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHHHh
Confidence 999999885543
No 269
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=92.41 E-value=3.6 Score=31.30 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=59.4
Q ss_pred ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcC---CCHHHHHHHHH
Q 043676 343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSH---DNNEIHEKSVK 419 (446)
Q Consensus 343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~---~~~~v~~~a~~ 419 (446)
++..|..-+.++++.++..|+..|..++..++.. |...+....++..+..+... .++.|++++..
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~------------f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ 105 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKP------------FHLQVADKEFLLELVKIAKNSPKYDPKVREKALE 105 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChH------------HHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 4566777778889999999999999999987764 57777777778888888764 57899999999
Q ss_pred HHHHhcCCC
Q 043676 420 IFKTYWCGR 428 (446)
Q Consensus 420 ~l~~~~~~~ 428 (446)
++..+...-
T Consensus 106 ll~~W~~~f 114 (133)
T cd03561 106 LILAWSESF 114 (133)
T ss_pred HHHHHHHHh
Confidence 999875433
No 270
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=92.37 E-value=1.3 Score=33.74 Aligned_cols=76 Identities=9% Similarity=-0.038 Sum_probs=63.2
Q ss_pred ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC---CCHHHHHHHHHHHHHHHHhhhh
Q 043676 300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC---SDPEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~~~~~~~~~l~~l~~~~~~ 375 (446)
++..|.+-++++++.++..|+..|-.+..++.......+....++..|..++.. .++.++..++..+........+
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 566777888899999999999999999999888777777776788889998865 4788999999999887765444
No 271
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=92.24 E-value=12 Score=36.36 Aligned_cols=285 Identities=13% Similarity=0.135 Sum_probs=140.2
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
++..+=+.+.++++.++--|+-.+.-..++.+++. .-++..|...+++++ ..++..|+..|+-.-.++ .++
T Consensus 416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~------dpalALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e 486 (878)
T KOG2005|consen 416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNEC------DPALALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QRE 486 (878)
T ss_pred hHHHHHHHhhcCCchhhhccceeeeeecccccccc------CHHHHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chH
Confidence 34556666777776666666554443233321111 124556667778887 688888888777655522 233
Q ss_pred HHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCC--hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 043676 83 VVIDHGAVPIFVKLLSSP--SDDVREQAVWALGNVAGDS--PRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF 158 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~~~--~~~v~~~a~~~l~~l~~~~--~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 158 (446)
.+ ...|..++.+. ..++...|...++.+.-++ .+.... ++..++..=......+..+-....|.-+
T Consensus 487 ~V-----~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~-----ilqtlmekse~El~d~~~RFL~LGL~ll 556 (878)
T KOG2005|consen 487 EV-----LELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSS-----ILQTLMEKSETELEDQWFRFLALGLALL 556 (878)
T ss_pred HH-----HHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHH-----HHHHHHHhhhhhhhchHHHHHHHHHHHH
Confidence 22 22566667663 3567777777777776333 222211 2233332221111222223333333333
Q ss_pred hcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCc---cchhHHH
Q 043676 159 CRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSP---SVLTPAL 235 (446)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~---~~~~~a~ 235 (446)
..... ..+...+.-+..-...++..+-..+...+.........+.+ ..+..+....+. .....|+
T Consensus 557 flgkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~----q~ll~~cgE~~~~~e~~~~~av 624 (878)
T KOG2005|consen 557 FLGKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQS----QLLLSFCGEHDADLESEQELAV 624 (878)
T ss_pred Hhccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEech----hhhhhhcCCCccchhhhccchh
Confidence 32221 12222223333223333333333332222221111111100 112222222111 1122344
Q ss_pred HHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcch
Q 043676 236 RTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDT 315 (446)
Q Consensus 236 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 315 (446)
--++-++-+.+-..+. .+..+-.++..+ ++.+|...=.+++-++..+|.. +++..|-++..+.+.++
T Consensus 625 LgiAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~ev 691 (878)
T KOG2005|consen 625 LGIALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEV 691 (878)
T ss_pred hhhhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHH
Confidence 4444444443332222 345566677777 7888888878888776666653 47778888888888888
Q ss_pred HHHHHHHHHHhccCCC
Q 043676 316 KKEAAWAISNATSGGT 331 (446)
Q Consensus 316 ~~~a~~aL~~l~~~~~ 331 (446)
..+++.+++-+-.+.+
T Consensus 692 a~naIfamGLiGAGTn 707 (878)
T KOG2005|consen 692 AMNAIFAMGLIGAGTN 707 (878)
T ss_pred HHHHHHHhccccCCcc
Confidence 8888888887765533
No 272
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=91.87 E-value=2 Score=35.19 Aligned_cols=98 Identities=15% Similarity=0.074 Sum_probs=72.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-----CCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcc
Q 043676 277 ISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN-----AEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLL 351 (446)
Q Consensus 277 a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll 351 (446)
|...|..+ ...|+....+.+..+--.+...+.. +...+|..++.+++.+.+++++...+++....++|...+++
T Consensus 120 aL~lLQcl-aShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIm 198 (315)
T COG5209 120 ALNLLQCL-ASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIM 198 (315)
T ss_pred HHHHHHHH-hcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHH
Confidence 34444444 4456777777776653334444432 23578899999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhh
Q 043676 352 LCSDPEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 352 ~~~~~~~~~~~~~~l~~l~~~~~~ 375 (446)
+.+++--+..++.++..++-.+..
T Consensus 199 e~gSElSktvaifI~qkil~dDvG 222 (315)
T COG5209 199 ELGSELSKTVAIFIFQKILGDDVG 222 (315)
T ss_pred HhhhHHHHHHHHHHHHHHhccchh
Confidence 999888888888888887765444
No 273
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=91.59 E-value=3.5 Score=46.56 Aligned_cols=267 Identities=14% Similarity=0.168 Sum_probs=141.9
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCCC-----CcHHHHHhcCCHHHHHHhh-cCCCChHHHHHHHHHHHHHcCCChhhHHHH
Q 043676 11 VWSDDNSLQLEATTLSRKLLSFDRN-----PPIEKVIQSGVVPRFVEFL-MREDYPQLQYEAAWVLINIASGTSENTNVV 84 (446)
Q Consensus 11 l~s~~~~~~~~a~~~l~~l~~~~~~-----~~~~~~~~~~~~~~L~~ll-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 84 (446)
+..+|++.+..+...+..+...... +..-..+ ...+..+..+- ..++ +.++......+. .......
T Consensus 490 ~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v-~~vl~~ll~~aia~~~-~~i~~~v~~~l~------~~~~~~l 561 (2341)
T KOG0891|consen 490 LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVV-KEVLSALLTVAIADTD-PDIRIRVLSSLN------ERFDAQL 561 (2341)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHH-HHHHHHHHHHhccCCC-cchhhhHHhhhc------cchhhhh
Confidence 4456777777776666655443211 0000001 11222222222 2333 555554444433 2222234
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC
Q 043676 85 IDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPE 164 (446)
Q Consensus 85 ~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 164 (446)
.+.+.+..+...+.++.-.+++.+...+++++..+|...-..+....+...-.+. .+....+...+..-+..+....+.
T Consensus 562 aQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~-~sg~~r~~~~~a~~~~~~i~~~~~ 640 (2341)
T KOG0891|consen 562 AQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELE-FSGMARTKEESAKLLCELIISSPV 640 (2341)
T ss_pred cCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhh-hcchHHhHHHHHHHhhHHHHHHHH
Confidence 4455666677777778888999999999999987774322221111111111111 111111111221111111111111
Q ss_pred CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHHhhc
Q 043676 165 PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGNIVT 243 (446)
Q Consensus 165 ~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~ 243 (446)
.........+..+...+.+.+..+...+..+++.|+...........+ ..++.+.+.+.. .+..-+..++++++++.+
T Consensus 641 ~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s 719 (2341)
T KOG0891|consen 641 LISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLES 719 (2341)
T ss_pred HHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence 112223445567777778888888899999999999766644444444 555666665555 344456788999999987
Q ss_pred CCchhhHHHH-hcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC
Q 043676 244 GDDFQTQCII-NHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG 287 (446)
Q Consensus 244 ~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~ 287 (446)
.......... ...++..+...+.......++.++...++++...
T Consensus 720 ~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 720 STGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred ccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 5443222222 2235566666776665677888888888877553
No 274
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.52 E-value=19 Score=37.23 Aligned_cols=399 Identities=15% Similarity=0.124 Sum_probs=200.1
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcC---CChhhHHHHHhc
Q 043676 11 VWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIAS---GTSENTNVVIDH 87 (446)
Q Consensus 11 l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~ 87 (446)
|++++.+.+...+..+.++-+.. .++-....+.--+|.++.-+..-. ..+|...+.+|---.. .-|+ + .
T Consensus 476 LkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvncvPe-q-E---- 547 (2799)
T KOG1788|consen 476 LKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVNCVPE-Q-E---- 547 (2799)
T ss_pred HHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhccCcH-H-H----
Confidence 56778888888888888776643 444444455567888887776655 4666655554422111 0111 1 1
Q ss_pred CChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcccc---chhHHHHHHHHHHHhhcCCC
Q 043676 88 GAVPIFVKLLSSP-SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA---KLSMLRNATRTLSNFCRGKP 163 (446)
Q Consensus 88 ~~i~~L~~~L~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~~ 163 (446)
+-.|+-+|+.+ +..++...+.....+...+...++.+.+-|.+..+...+.++. .++- .. -........+
T Consensus 548 --LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdq-ys---gvsehydrnp 621 (2799)
T KOG1788|consen 548 --LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQ-YS---GVSEHYDRNP 621 (2799)
T ss_pred --HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcch-hh---hHHHHhhcCC
Confidence 23456667664 3455666666667777777778888889998888887774422 1110 00 0111111111
Q ss_pred CC-Chh---hhhhhHHHHHHhhcCC--CHhHH------HHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccch
Q 043676 164 EP-PFD---QVRPALPALAQLVHSN--DEDVL------TYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVL 231 (446)
Q Consensus 164 ~~-~~~---~~~~~~~~l~~ll~~~--~~~v~------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 231 (446)
.. .+. .....+-.--.+.+++ ...+. .-.-.++..+..++.++...+.+..++..++.++- +.+-|
T Consensus 622 ss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfli--ndehR 699 (2799)
T KOG1788|consen 622 SSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLI--NDEHR 699 (2799)
T ss_pred CCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeee--chHHH
Confidence 10 000 0000000001112221 11111 11234566677777777777888888888888773 44457
Q ss_pred hHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCc-------h----HHHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 043676 232 TPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNH-------E----EIIKKEISWIISNITAGNREQIQAVIDAGL 300 (446)
Q Consensus 232 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 300 (446)
...++++..|....+.+.. ..-+-.++..|+++- . .........++..+..-+...+..+.+.++
T Consensus 700 SslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatG 775 (2799)
T KOG1788|consen 700 SSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATG 775 (2799)
T ss_pred HHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhcccc
Confidence 7778888888766655322 112233444454410 1 233344555666665434444555667777
Q ss_pred hHHHHHHHhc----------CCcchHHHHHHHHHH---hccCCCHHHHHH-------------HHHcCC---------hH
Q 043676 301 IRPIVNLLQN----------AEFDTKKEAAWAISN---ATSGGTQEQIKH-------------LVREGC---------VK 345 (446)
Q Consensus 301 i~~L~~ll~~----------~~~~v~~~a~~aL~~---l~~~~~~~~~~~-------------l~~~~~---------i~ 345 (446)
+..|...+.. +|.-+-.+-...|.. ++...++.++.+ +.+.|. +.
T Consensus 776 FslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viq 855 (2799)
T KOG1788|consen 776 FSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQ 855 (2799)
T ss_pred HHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHH
Confidence 7777766642 111111122222221 111112222222 222231 11
Q ss_pred HHHhc-ccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 043676 346 PLCDL-LLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTY 424 (446)
Q Consensus 346 ~L~~l-l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~ 424 (446)
.+.++ ++.--+.-...-..+...+++.+.+......-.+.+++..+.+-.+|..+.|.+..-...+.++-.-..+++..
T Consensus 856 lllElalevlvppfLtSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSl 935 (2799)
T KOG1788|consen 856 LLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESL 935 (2799)
T ss_pred HHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 11111 01111111111122344444443332211111367788888888999999988887777778776666666666
Q ss_pred cCCCC
Q 043676 425 WCGRN 429 (446)
Q Consensus 425 ~~~~~ 429 (446)
....+
T Consensus 936 aRasp 940 (2799)
T KOG1788|consen 936 ARASP 940 (2799)
T ss_pred hhcCC
Confidence 54433
No 275
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.43 E-value=12 Score=39.69 Aligned_cols=264 Identities=11% Similarity=0.108 Sum_probs=114.1
Q ss_pred cchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC---CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHH
Q 043676 143 AKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSN---DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRL 219 (446)
Q Consensus 143 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~---~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l 219 (446)
...+++.....++.++...........-..+++.+-...... ..++.+.+..++.-++...-.....-.-.++++.+
T Consensus 854 ~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl 933 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTL 933 (1610)
T ss_pred ccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHH
Confidence 345566666667766665542111111112222222222222 34555555555555553211000000111556666
Q ss_pred HHhcCC-CCccchhHHHHHHHHhhcCCchhhH----HHHhcCChHHHHHHhccCchHHHHHHHHHHHH--HHhcCCHHHH
Q 043676 220 VELLGH-PSPSVLTPALRTVGNIVTGDDFQTQ----CIINHGAVPYLLDMLVHNHEEIIKKEISWIIS--NITAGNREQI 292 (446)
Q Consensus 220 ~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~--~l~~~~~~~~ 292 (446)
..+-+. .|..+-..|+..+++++..-..-.. ..-....+..+.. ..+ ...+-.+++|.+. +++....+.
T Consensus 934 ~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s--s~~-~~~~l~e~lwi~ll~~L~~~~~ds- 1009 (1610)
T KOG1848|consen 934 LVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS--SMK-SKEILPEVLWIMLLVHLADLCEDS- 1009 (1610)
T ss_pred HHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc--ccc-chhhhhhHHHHHHHHHHHHHhccc-
Confidence 655544 5666777777777777642211010 1111222333333 112 3455556666432 222211111
Q ss_pred HHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHH----HhcccCCCHHHHHHHHHHHHH
Q 043676 293 QAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPL----CDLLLCSDPEIVTVCLIGLEN 368 (446)
Q Consensus 293 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L----~~ll~~~~~~~~~~~~~~l~~ 368 (446)
+.-+++|.++.+.+.+.++....... +|..+-. ..+..+.+..-+... -+.++.+..+.....+.++.+
T Consensus 1010 r~eVRngAvqtlfri~~Shg~~l~~~-aW~s~~w------~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIak 1082 (1610)
T KOG1848|consen 1010 RAEVRNGAVQTLFRIFNSHGSKLGTN-AWASCCW------LVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAK 1082 (1610)
T ss_pred hHHHhhhHHHHHHHHHhhhcccCChh-HHHHHHH------HHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHH
Confidence 22234577777777776654433322 2222111 000011110000000 001122334455566777777
Q ss_pred HHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043676 369 ILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYW 425 (446)
Q Consensus 369 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 425 (446)
+|.-.-+.- ...+.+....++ .++.+.++..+.++++.-.|.+.++...
T Consensus 1083 lf~e~fk~l------lnln~f~~vwe~--ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1083 LFSENFKLL------LNLNGFLDVWEE--LLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred HHHHHHHHH------HhcccHHHHHHH--HHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 765322221 112223333322 2556777888899999888888887663
No 276
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.25 E-value=18 Score=36.51 Aligned_cols=354 Identities=12% Similarity=0.072 Sum_probs=168.2
Q ss_pred HHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHh
Q 043676 64 YEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS----PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAEL 139 (446)
Q Consensus 64 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l 139 (446)
..++.+|.-+.. ..+....+.+.| +..++-++.. .+..+.-.++..++.++..+. +...+++.+++..|+..-
T Consensus 327 ~~~~q~l~~lge-y~e~lpv~~~~g-~~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~k-fa~~fv~~~gi~kll~vp 403 (1516)
T KOG1832|consen 327 KYCIQCLEILGE-YVEVLPVLHEKG-VDVCIVLLERTSQLDDSPLLPDVMKLICALAAHRK-FAAMFVERRGILKLLAVP 403 (1516)
T ss_pred HHHHHHHHHHHh-HHHHHHHHHHhC-chhhhhhhhhhhccccccccHHHHHHHHHHHHhhH-HHHHHHHhhhhHHHhcCC
Confidence 344455555544 445555555655 4444444432 344455566677777774443 455677778877776554
Q ss_pred ccccchhHHHHHHHHHHHhhcCC------CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHh
Q 043676 140 NEHAKLSMLRNATRTLSNFCRGK------PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEA 213 (446)
Q Consensus 140 ~~~~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~ 213 (446)
.-+ ....-...||+.+.... -..........+..-+.++......-+.++...+.... .-......+-..
T Consensus 404 r~s---~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f-~frail~~fd~~ 479 (1516)
T KOG1832|consen 404 RVS---ETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALFFAAAF-VFRAILDAFDAQ 479 (1516)
T ss_pred Cch---hhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHHHHHHHH-HHHHHHHHHhhh
Confidence 222 12223334444444332 01122334556666666776554333333222221100 000011112222
Q ss_pred CcHHHHHHhcCC--------CCc-----------cchhHHHHHHHHhhcC-----CchhhHHHHhcCChHHHHHHhccCc
Q 043676 214 GVCPRLVELLGH--------PSP-----------SVLTPALRTVGNIVTG-----DDFQTQCIINHGAVPYLLDMLVHNH 269 (446)
Q Consensus 214 ~~~~~l~~ll~~--------~~~-----------~~~~~a~~~l~~l~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~ 269 (446)
+.+..|+.+++. .+. ......|.++...... -+..++.-+..+..+..+.-+..+.
T Consensus 480 d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~ 559 (1516)
T KOG1832|consen 480 DSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAY 559 (1516)
T ss_pred hHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCC
Confidence 445555555432 111 1112233333322210 1111112222233333333222221
Q ss_pred -h----HHHHHHHHHHHHHHhcCCH-------HHHHHHHHcCChHHHHHHHhcC--------CcchHHHHHHHHHHhccC
Q 043676 270 -E----EIIKKEISWIISNITAGNR-------EQIQAVIDAGLIRPIVNLLQNA--------EFDTKKEAAWAISNATSG 329 (446)
Q Consensus 270 -~----~~v~~~a~~~l~~l~~~~~-------~~~~~~~~~~~i~~L~~ll~~~--------~~~v~~~a~~aL~~l~~~ 329 (446)
. ....++.+|-+-.+....+ .....+.+.+++..++.+.... ..++...|+.+|+-+..
T Consensus 560 ~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~- 638 (1516)
T KOG1832|consen 560 KPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS- 638 (1516)
T ss_pred CcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe-
Confidence 1 1223344444444433222 2234466677888888777643 13556677777776655
Q ss_pred CCHHHHHHHHHc--------CChHHHHhccc----CCCHHHHHHHHHHHHHHHHhhhhhhccc-----C-------C---
Q 043676 330 GTQEQIKHLVRE--------GCVKPLCDLLL----CSDPEIVTVCLIGLENILKVGEAERNMG-----T-------T--- 382 (446)
Q Consensus 330 ~~~~~~~~l~~~--------~~i~~L~~ll~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~-------~--- 382 (446)
-|.....++.. .++..+++.-. .-||+++..|+.+|.+++.-.+...+.. . .
T Consensus 639 -iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~ 717 (1516)
T KOG1832|consen 639 -IPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGA 717 (1516)
T ss_pred -cchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccC
Confidence 34444444431 13444444322 2489999999999999876653322110 0 0
Q ss_pred -------CCccchHHHHHHHhChHHHHHHhhcCCCH-----HHHHHHHHHHHHhcC
Q 043676 383 -------IGDVNQYAQFVEEAGGLEKIENLQSHDNN-----EIHEKSVKIFKTYWC 426 (446)
Q Consensus 383 -------~~~~~~~~~~l~~~~~~~~l~~l~~~~~~-----~v~~~a~~~l~~~~~ 426 (446)
..........++..+|+..|.+|++..+| .++..|.+.|-.+-.
T Consensus 718 ~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR 773 (1516)
T KOG1832|consen 718 GTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLAR 773 (1516)
T ss_pred CCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccc
Confidence 01123345667778899998888876653 466777766654433
No 277
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.01 E-value=25 Score=37.71 Aligned_cols=114 Identities=12% Similarity=0.150 Sum_probs=71.7
Q ss_pred cCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHH
Q 043676 255 HGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQ 334 (446)
Q Consensus 255 ~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~ 334 (446)
.+++|.|-.-|.+. +..+|..|...++.+......... =-...+...++.-+.+.+.++|..++....++.... +..
T Consensus 258 ~~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~-~~~ 334 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNN-PSI 334 (1266)
T ss_pred HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcC-chh
Confidence 36788888888888 899999999999999764222211 001234555556666677778877777777665432 111
Q ss_pred HH-----------------------------------HHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHh
Q 043676 335 IK-----------------------------------HLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKV 372 (446)
Q Consensus 335 ~~-----------------------------------~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~ 372 (446)
.+ .+... .+..+.+-+.+..+.||..|+..|..+++.
T Consensus 335 ~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 335 AKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 00 00111 222333344567889999999999988874
No 278
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=91.00 E-value=12 Score=33.86 Aligned_cols=167 Identities=13% Similarity=0.143 Sum_probs=118.4
Q ss_pred HHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHHH-cCC-hHHHHHHHhcC-----C--------cc
Q 043676 251 CIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAVID-AGL-IRPIVNLLQNA-----E--------FD 314 (446)
Q Consensus 251 ~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~-~~~-i~~L~~ll~~~-----~--------~~ 314 (446)
.+++.. +..+...|... ...+...+...|..++. .+......+.. -++ .+.+-+++... . +.
T Consensus 52 ~iL~~~-~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~s 129 (330)
T PF11707_consen 52 SILQNH-LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPS 129 (330)
T ss_pred HHHHHH-HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcC
Confidence 444443 77888899888 77788899999999988 66566666654 233 44455555321 1 28
Q ss_pred hHHHHHHHHHHhccCCCHHHHHHHHH-cCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHH
Q 043676 315 TKKEAAWAISNATSGGTQEQIKHLVR-EGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFV 393 (446)
Q Consensus 315 v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l 393 (446)
+|...+..+..+...+++.....+++ .+.+..+.+-+..+++++....+..+..-+-.++... +..+..+
T Consensus 130 iR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~---------r~~K~~~ 200 (330)
T PF11707_consen 130 IRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVS---------RSTKCKL 200 (330)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCC---------hhhhhhh
Confidence 99999999999988888887777765 5668888888999889999999999986554443322 1123344
Q ss_pred HHhChHHHHHHhhcCCCH----HHHHHHHHHHHHhcCCC
Q 043676 394 EEAGGLEKIENLQSHDNN----EIHEKSVKIFKTYWCGR 428 (446)
Q Consensus 394 ~~~~~~~~l~~l~~~~~~----~v~~~a~~~l~~~~~~~ 428 (446)
-....+..|..+-..+++ .+.+.+.+.+..+..+.
T Consensus 201 fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 201 FNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred cCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCC
Confidence 445578888888877777 88888888888776543
No 279
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=90.78 E-value=0.7 Score=38.35 Aligned_cols=83 Identities=16% Similarity=0.252 Sum_probs=60.8
Q ss_pred cchhHHHHHHHHhhcCCchhhHHHHhc-------CChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHH-HcCC
Q 043676 229 SVLTPALRTVGNIVTGDDFQTQCIINH-------GAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVI-DAGL 300 (446)
Q Consensus 229 ~~~~~a~~~l~~l~~~~~~~~~~~~~~-------~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~ 300 (446)
.-+..|+.+++.|+-.. .+.+.++.. .++..|..++...++...|+.|+..|.+++.++......+. +.+.
T Consensus 139 SPqrlaLEaLcKLsV~e-~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIE-NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhheec-cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 35778999999998632 233333322 35667777787776889999999999999987776665544 6788
Q ss_pred hHHHHHHHhcCC
Q 043676 301 IRPIVNLLQNAE 312 (446)
Q Consensus 301 i~~L~~ll~~~~ 312 (446)
+..|+.++.+.+
T Consensus 218 i~~Li~FiE~a~ 229 (257)
T PF12031_consen 218 ISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHHH
Confidence 999999997654
No 280
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=90.68 E-value=1.2 Score=33.88 Aligned_cols=74 Identities=14% Similarity=0.151 Sum_probs=59.0
Q ss_pred ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCC--HHHHHHHHHH
Q 043676 343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDN--NEIHEKSVKI 420 (446)
Q Consensus 343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~--~~v~~~a~~~ 420 (446)
++..|..-+.++++.++..++..|..++..+... |...+...++++.|..+...+. +.|++++..+
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~------------f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~l 105 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSK------------FHLEVASKEFLNELVKLIKPKYPLPLVKKRILEL 105 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------------HHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 3555666677899999999999999999987654 6788888889999998876643 3489999999
Q ss_pred HHHhcCCC
Q 043676 421 FKTYWCGR 428 (446)
Q Consensus 421 l~~~~~~~ 428 (446)
+..+...-
T Consensus 106 i~~W~~~f 113 (133)
T smart00288 106 IQEWADAF 113 (133)
T ss_pred HHHHHHHH
Confidence 98886544
No 281
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=90.61 E-value=2.9 Score=36.69 Aligned_cols=135 Identities=15% Similarity=0.238 Sum_probs=75.7
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH-HHHHhcCChHHHHH----hhC--------CCCHHHHHHHHHH
Q 043676 45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT-NVVIDHGAVPIFVK----LLS--------SPSDDVREQAVWA 111 (446)
Q Consensus 45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~----~L~--------~~~~~v~~~a~~~ 111 (446)
-++|.++.++++.+ +.+|..++.+|..+....+... ..+...|..+.+.+ ++. +++..+...+.-+
T Consensus 119 liiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 119 LIIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred HHHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 36899999999998 8999999999999998443333 33556676655444 333 2345566777777
Q ss_pred HHHhhCC-----ChH---HHHHHHHcCChHHHHHHhcccc---chhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHh
Q 043676 112 LGNVAGD-----SPR---CRDLVLSQGALIPLLAELNEHA---KLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL 180 (446)
Q Consensus 112 l~~l~~~-----~~~---~~~~~~~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~l 180 (446)
+..++.. ... ....++..| ++.-+.... .+.++...+..+..+...-..........+++.+.+.
T Consensus 198 L~~L~~~~~~~~~~~r~~~l~~~l~e~----IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~ 273 (282)
T PF10521_consen 198 LLSLLKTQENDDSNPRSTWLDKILREG----ILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQI 273 (282)
T ss_pred HHHHHHhhccCCcccchHHHHHHHHHH----HhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 7777421 111 111111211 222221112 3556666665555555443333333445566666665
Q ss_pred hcCC
Q 043676 181 VHSN 184 (446)
Q Consensus 181 l~~~ 184 (446)
+.+.
T Consensus 274 l~np 277 (282)
T PF10521_consen 274 LENP 277 (282)
T ss_pred hcCC
Confidence 5543
No 282
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=90.25 E-value=11 Score=32.48 Aligned_cols=213 Identities=20% Similarity=0.133 Sum_probs=120.9
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCCCC--C-cHHHHH-------h----cCCHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 043676 8 VAGVWSDDNSLQLEATTLSRKLLSFDRN--P-PIEKVI-------Q----SGVVPRFVEFLMREDYPQLQYEAAWVLINI 73 (446)
Q Consensus 8 ~~~l~s~~~~~~~~a~~~l~~l~~~~~~--~-~~~~~~-------~----~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l 73 (446)
+.+|.+.+...-..|+..+.++...-.- + ..+.+. + .|+.+.+++-+.++.. ...++..|..+
T Consensus 13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t---~e~tl~lL~~L 89 (262)
T PF14225_consen 13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSST---YELTLRLLSRL 89 (262)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCc---HHHHHHHHHHH
Confidence 5678888888888888888887665311 1 111111 1 2344445555555543 44555566665
Q ss_pred cCC-------ChhhHHHHHhcCChHHHHHhhCCCC----HHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccc
Q 043676 74 ASG-------TSENTNVVIDHGAVPIFVKLLSSPS----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEH 142 (446)
Q Consensus 74 ~~~-------~~~~~~~~~~~~~i~~L~~~L~~~~----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~ 142 (446)
+.- +++.|-.+.-.+.+|.++.-+.+++ ......++..|..+|.... ...+..++....+.
T Consensus 90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~ 161 (262)
T PF14225_consen 90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG 161 (262)
T ss_pred hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence 541 1223333333355677777777665 1334456677777773221 11244444444333
Q ss_pred c---chhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHH
Q 043676 143 A---KLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRL 219 (446)
Q Consensus 143 ~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l 219 (446)
. ..+....++..|..-.- |. .....+..++.++.++-+.++..++.+|..+....+-... ...+++..+
T Consensus 162 ~fr~~~dfl~~v~~~l~~~f~--P~----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispl 233 (262)
T PF14225_consen 162 RFRDKDDFLSQVVSYLREAFF--PD----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPL 233 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHhC--ch----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHH
Confidence 2 23344444444443211 21 2245677788999999999999999999999876553322 445788889
Q ss_pred HHhcCCCCccchhHHHHHHHHhh
Q 043676 220 VELLGHPSPSVLTPALRTVGNIV 242 (446)
Q Consensus 220 ~~ll~~~~~~~~~~a~~~l~~l~ 242 (446)
.++++.+-. ..|+.++-+..
T Consensus 234 lrlL~t~~~---~eAL~VLd~~v 253 (262)
T PF14225_consen 234 LRLLQTDLW---MEALEVLDEIV 253 (262)
T ss_pred HHHhCCccH---HHHHHHHHHHH
Confidence 998866543 45555554443
No 283
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=89.83 E-value=8.7 Score=38.35 Aligned_cols=157 Identities=18% Similarity=0.208 Sum_probs=107.1
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
.|..|+.+|.|.+..+...+-..+......+ .++ -++..|+...-+... ..|+.+|..+-. |..+
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~-~~~-------~l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K- 69 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSD-REP-------WLVNGLVDYYLSTNS----QRALEILVGVQE--PHDK- 69 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhcc-chH-------HHHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH-
Confidence 4677888999999888888888887766554 222 136666666544442 345666665533 3222
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK 162 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 162 (446)
.++..|-..+.. +..|..++..|+.+....|..-..+.+...+..|++.|..+.+..+...|+.+|..|.-.-
T Consensus 70 -----~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 70 -----HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred -----HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 224555555553 5678889999999998877777788888999999999988889999999999998887665
Q ss_pred CCCChhhhhhhHHHHHHhh
Q 043676 163 PEPPFDQVRPALPALAQLV 181 (446)
Q Consensus 163 ~~~~~~~~~~~~~~l~~ll 181 (446)
+.........++.....++
T Consensus 143 p~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 143 PSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred cchhhHHHHHHHHHHHHHH
Confidence 5443334444444444444
No 284
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=89.81 E-value=3.5 Score=29.20 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=55.3
Q ss_pred cCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHH
Q 043676 341 EGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI 420 (446)
Q Consensus 341 ~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~ 420 (446)
...+..|++-+..+++.....++..+..+.+.... ...+.+.|+.+-+.++...-+++.+.....+
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a--------------~~~l~~iG~~~fL~klr~~~~~~~~~~id~i 94 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYA--------------AQILRDIGAVRFLSKLRPNVEPNLQAEIDEI 94 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHH--------------HHHHHHccHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34566777777778878889999999998876555 4789999999999999988888888777777
Q ss_pred HHH
Q 043676 421 FKT 423 (446)
Q Consensus 421 l~~ 423 (446)
++.
T Consensus 95 l~~ 97 (98)
T PF14726_consen 95 LDQ 97 (98)
T ss_pred Hhc
Confidence 654
No 285
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=89.80 E-value=0.99 Score=34.32 Aligned_cols=73 Identities=11% Similarity=0.000 Sum_probs=57.4
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChH-HHHHHHHHHHHHcC
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ-LQYEAAWVLINIAS 75 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~-~~~~a~~~L~~l~~ 75 (446)
++..|.+.|++.++.++..|+..|-.+...-+.....++...+++..|..++....... ++..++..+...+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 45677888899999999999999988777644555677778889999999988765333 88888888877664
No 286
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=89.73 E-value=2.9 Score=34.29 Aligned_cols=141 Identities=13% Similarity=0.180 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC----CCChHHHHHHHHHHHHHcC-CChhhHHHHHhcCChHHH
Q 043676 19 QLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMR----EDYPQLQYEAAWVLINIAS-GTSENTNVVIDHGAVPIF 93 (446)
Q Consensus 19 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~----~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L 93 (446)
...|+..|..+++. ++....+.+..+--.+-..|.. ...+-+|..++.+++.+.. ++++....+....++|..
T Consensus 117 vcnaL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 117 VCNALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred HHHHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 34566666666665 4444455555433333444432 2235678899999999998 445666677788999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHH---Hc----CChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676 94 VKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVL---SQ----GALIPLLAELNEHAKLSMLRNATRTLSNFCRG 161 (446)
Q Consensus 94 ~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~---~~----~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 161 (446)
++.+..+++--+..++.++..+..++....-... .. ..+..++..+-+.....+...++++-..++.+
T Consensus 195 LrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~ 269 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK 269 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence 9999999888888899888888766543221111 10 11222222222334455666666665555554
No 287
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.66 E-value=33 Score=36.91 Aligned_cols=125 Identities=9% Similarity=0.054 Sum_probs=74.7
Q ss_pred CChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhc
Q 043676 299 GLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERN 378 (446)
Q Consensus 299 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~ 378 (446)
+++|.|-.-|.+.+..+|..|...++.+........... ........+.-+.+.+.++|..+++...+++...+...+
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~--~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSET--YDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhccc--chHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhh
Confidence 689999999999999999999999999987422111100 012234444455667778888888777777655333221
Q ss_pred ccCC----------------------CCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043676 379 MGTT----------------------IGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWC 426 (446)
Q Consensus 379 ~~~~----------------------~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 426 (446)
-... ......+...+... .+...-+-+.+....|+..|..-+..+|.
T Consensus 337 ~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 337 ASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred HHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 1000 11122222333322 44455555667778888888776666654
No 288
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=89.56 E-value=2.7 Score=32.29 Aligned_cols=73 Identities=15% Similarity=0.262 Sum_probs=57.2
Q ss_pred ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhc-CCCHH---HHHHHH
Q 043676 343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQS-HDNNE---IHEKSV 418 (446)
Q Consensus 343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~---v~~~a~ 418 (446)
++..|..-|.++++.++..|+..|..+++.+... |...+....+++.+..+.. ..... |++++.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~------------f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l 110 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPR------------FHREVASKEFLDELVKLIKSKKTDPETPVKEKIL 110 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHH------------HHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHH
Confidence 4566777778899999999999999999987664 6778877788888888754 34444 899999
Q ss_pred HHHHHhcCC
Q 043676 419 KIFKTYWCG 427 (446)
Q Consensus 419 ~~l~~~~~~ 427 (446)
.++..+-..
T Consensus 111 ~ll~~W~~~ 119 (140)
T PF00790_consen 111 ELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988877443
No 289
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=89.04 E-value=1.4 Score=33.94 Aligned_cols=74 Identities=9% Similarity=0.030 Sum_probs=58.8
Q ss_pred ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCC-CHH---HHHHHHHHHHHHHHhh
Q 043676 300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCS-DPE---IVTVCLIGLENILKVG 373 (446)
Q Consensus 300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~---~~~~~~~~l~~l~~~~ 373 (446)
++..|.+-+.++++.++..|+..|-.+..++++.....+....++..|..++... ... |+..++..+.......
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 5667778888899999999999999999987777777777777888888887643 333 8999888888776544
No 290
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=89.04 E-value=4.7 Score=35.08 Aligned_cols=158 Identities=17% Similarity=0.188 Sum_probs=95.8
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcC--ChHHHHHhhC----CCCHHHHHHHHHHHHHhhCCCh
Q 043676 47 VPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHG--AVPIFVKLLS----SPSDDVREQAVWALGNVAGDSP 120 (446)
Q Consensus 47 ~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~~L~----~~~~~v~~~a~~~l~~l~~~~~ 120 (446)
...+...+.+-. ++-+.-++..+.-++. ++.....+...+ ....+..++. +..+..+-.++++++|+.....
T Consensus 65 ~~~~~~~~~~Wp-~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~ 142 (268)
T PF08324_consen 65 LILLLKILLSWP-PESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP 142 (268)
T ss_dssp HHHHHHHHCCS--CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHhCC-CccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc
Confidence 445555555554 4567778888877777 555555554433 2344444433 2567888899999999996554
Q ss_pred HHHHHHHHcC--ChHHHHHHhcccc---chhHHHHHHHHHHHhhcCC-CCC-ChhhhhhhHHHHHHhhcC--CCHhHHHH
Q 043676 121 RCRDLVLSQG--ALIPLLAELNEHA---KLSMLRNATRTLSNFCRGK-PEP-PFDQVRPALPALAQLVHS--NDEDVLTY 191 (446)
Q Consensus 121 ~~~~~~~~~~--~i~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~-~~~-~~~~~~~~~~~l~~ll~~--~~~~v~~~ 191 (446)
.+..+.... .+...+..+.... +..++..++..+.|++... ... ........+..+...+.. .|++....
T Consensus 143 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R 221 (268)
T PF08324_consen 143 -GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYR 221 (268)
T ss_dssp -CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHH
T ss_pred -cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 344444322 2333333332222 6788888889999987654 111 222333456666664432 58999999
Q ss_pred HHHHHHHhccCCcHHH
Q 043676 192 ACWSLSYLADGTNDKI 207 (446)
Q Consensus 192 ~~~~l~~l~~~~~~~~ 207 (446)
++-+++++...++...
T Consensus 222 ~LvAlGtL~~~~~~~~ 237 (268)
T PF08324_consen 222 LLVALGTLLSSSDSAK 237 (268)
T ss_dssp HHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHhccChhHH
Confidence 9999999996655433
No 291
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=89.02 E-value=8.4 Score=30.92 Aligned_cols=71 Identities=18% Similarity=0.174 Sum_probs=53.8
Q ss_pred CChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhcc
Q 043676 256 GAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATS 328 (446)
Q Consensus 256 ~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 328 (446)
..++.+.+-|... +...+--|...+..+... ..+.+-.++. .++.++...|.+.++++...++.+|..++.
T Consensus 38 ~~Lpif~dGL~Et-~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 38 HYLPIFFDGLRET-EHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hHHHHHHhhhhcc-CccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3577788888777 666677777777777664 4554444443 578888899999999999999999999944
No 292
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=88.93 E-value=25 Score=34.66 Aligned_cols=134 Identities=16% Similarity=0.151 Sum_probs=81.4
Q ss_pred hHHHHHHhcc---ccchhHHHHHHHHHHHhhcCC----CCCChhhhhhhHHHHHHhhc----CCCHhHHHHHHHHHHHhc
Q 043676 132 LIPLLAELNE---HAKLSMLRNATRTLSNFCRGK----PEPPFDQVRPALPALAQLVH----SNDEDVLTYACWSLSYLA 200 (446)
Q Consensus 132 i~~l~~~l~~---~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~~~~l~~ll~----~~~~~v~~~~~~~l~~l~ 200 (446)
+..+..++.. ..++.++..++.+++.+.... +.........+++.+...+. ..+.+-+...+.+|+|+.
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g 474 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG 474 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence 4455566632 124567777777777776532 11112233556666666554 346666788889999876
Q ss_pred cCCcHHHHHHHHhCcHHHHHHhcC-C--CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhcc-CchHHHHHH
Q 043676 201 DGTNDKIQAVIEAGVCPRLVELLG-H--PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVH-NHEEIIKKE 276 (446)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~l~~ll~-~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~v~~~ 276 (446)
... .++.+..++. . .+..+|..|+++|..++...+.... +.++.++.+ ..+.++|..
T Consensus 475 ~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~EvRia 535 (574)
T smart00638 475 HPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEVRMA 535 (574)
T ss_pred Chh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHHHHH
Confidence 532 2233444444 2 3456899999999988865554333 456666654 347789988
Q ss_pred HHHHHHHH
Q 043676 277 ISWIISNI 284 (446)
Q Consensus 277 a~~~l~~l 284 (446)
|+..|...
T Consensus 536 A~~~lm~t 543 (574)
T smart00638 536 AVLVLMET 543 (574)
T ss_pred HHHHHHhc
Confidence 88777654
No 293
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=88.85 E-value=12 Score=36.01 Aligned_cols=218 Identities=9% Similarity=-0.032 Sum_probs=121.0
Q ss_pred ccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-----------CCCHhHHHHHHHHHHHhccCCcHHHHHH
Q 043676 142 HAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH-----------SNDEDVLTYACWSLSYLADGTNDKIQAV 210 (446)
Q Consensus 142 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~-----------~~~~~v~~~~~~~l~~l~~~~~~~~~~~ 210 (446)
+++.++...+-..|..+... .....++..|..+.. ..++.++..++..|+.=.... -
T Consensus 248 d~~~~V~~~ae~~LKr~~~~------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa------~ 315 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVS------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA------T 315 (501)
T ss_pred CCcchHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH------h
Confidence 34556666676677666554 233556666766665 236778888877776521100 0
Q ss_pred HHhCcHHHHHHhcCCC--CccchhHHHHHH---HHhhcCCchhhHHHHhcCChHHHHHHhc-------cCchHHHHHHHH
Q 043676 211 IEAGVCPRLVELLGHP--SPSVLTPALRTV---GNIVTGDDFQTQCIINHGAVPYLLDMLV-------HNHEEIIKKEIS 278 (446)
Q Consensus 211 ~~~~~~~~l~~ll~~~--~~~~~~~a~~~l---~~l~~~~~~~~~~~~~~~~~~~l~~~l~-------~~~~~~v~~~a~ 278 (446)
.....+..+..-+.+. +.+++..++..+ .....+.....-..+...+...+...+. ...+...|..+.
T Consensus 316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aY 395 (501)
T PF13001_consen 316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAY 395 (501)
T ss_pred CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHH
Confidence 1113334444445554 566777777777 5555444333222332223333333332 112678899999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHH-HHHHHcCChHHH-HhcccCCCH
Q 043676 279 WIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQI-KHLVREGCVKPL-CDLLLCSDP 356 (446)
Q Consensus 279 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~-~~l~~~~~i~~L-~~ll~~~~~ 356 (446)
.+|+.++...+.... -+.+++..|++-+..+.++++..+-.||..++..-....- ...........+ .....+...
T Consensus 396 e~lG~L~~~~p~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 473 (501)
T PF13001_consen 396 ETLGLLAKRAPSLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVR 473 (501)
T ss_pred HHHHHHHccCccccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhH
Confidence 999999886555321 1235788888888888899999999999888653111000 000000011112 222234456
Q ss_pred HHHHHHHHHHHHHHHhh
Q 043676 357 EIVTVCLIGLENILKVG 373 (446)
Q Consensus 357 ~~~~~~~~~l~~l~~~~ 373 (446)
.++..|++....++..+
T Consensus 474 ~~R~~avk~an~~fpf~ 490 (501)
T PF13001_consen 474 SCRYAAVKYANACFPFS 490 (501)
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 67777777777766543
No 294
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=88.83 E-value=4.4 Score=36.73 Aligned_cols=209 Identities=17% Similarity=0.150 Sum_probs=110.1
Q ss_pred HhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC--C
Q 043676 42 IQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGD--S 119 (446)
Q Consensus 42 ~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~--~ 119 (446)
....++..+..++..+.++......+.++..-...- ..-+...+++.+.+-+.+..+.+|..-+..++..... +
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN 94 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence 334567777888877655677777777776655311 0011224567788888887777888888888887741 1
Q ss_pred hHHHHHHHHcCChHHHHHHhcc---ccchhHH---HHHHHHHHHhhcCC-----------------CCCChhhhhhhHHH
Q 043676 120 PRCRDLVLSQGALIPLLAELNE---HAKLSML---RNATRTLSNFCRGK-----------------PEPPFDQVRPALPA 176 (446)
Q Consensus 120 ~~~~~~~~~~~~i~~l~~~l~~---~~~~~~~---~~a~~~L~~l~~~~-----------------~~~~~~~~~~~~~~ 176 (446)
...... -...++.++..+.+ ++-+..+ ..++.++..+.... +...+....
T Consensus 95 ~~~~~~--~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~----- 167 (339)
T PF12074_consen 95 SDSLKF--AEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSE----- 167 (339)
T ss_pred chHHHH--HHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCH-----
Confidence 111111 22356677776632 1111111 01111111111111 001111111
Q ss_pred HHHhhcC-CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC--CccchhHHHHHHHHhhcCCchhhHHHH
Q 043676 177 LAQLVHS-NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHP--SPSVLTPALRTVGNIVTGDDFQTQCII 253 (446)
Q Consensus 177 l~~ll~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~ 253 (446)
++... .+++-....++++..+..........-....+-..++.++-++ .+.+|..|+..+..+...++.. +
T Consensus 168 --kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l 241 (339)
T PF12074_consen 168 --KVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----L 241 (339)
T ss_pred --HHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----H
Confidence 12222 3455555666666666544332221111224556788888887 8899999999999998877763 2
Q ss_pred hcCChHHHHHHhcc
Q 043676 254 NHGAVPYLLDMLVH 267 (446)
Q Consensus 254 ~~~~~~~l~~~l~~ 267 (446)
...++..+-..+..
T Consensus 242 ~~~li~~l~~~l~~ 255 (339)
T PF12074_consen 242 SKSLISGLWKWLSS 255 (339)
T ss_pred HHHHHHHHHHHHHh
Confidence 23345556666543
No 295
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.82 E-value=28 Score=34.94 Aligned_cols=161 Identities=14% Similarity=0.104 Sum_probs=89.9
Q ss_pred HHHHhCcHHHHHHhcCCCCccch-hHHHHHHHHhhcCCchhhHHHHhcCChHHHHH-HhccCc-hHHHHHHHHHHHHHHh
Q 043676 209 AVIEAGVCPRLVELLGHPSPSVL-TPALRTVGNIVTGDDFQTQCIINHGAVPYLLD-MLVHNH-EEIIKKEISWIISNIT 285 (446)
Q Consensus 209 ~~~~~~~~~~l~~ll~~~~~~~~-~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~-~l~~~~-~~~v~~~a~~~l~~l~ 285 (446)
.+.+.+-++.+-+-+...|.+.| ..|+..+.-|+...+.....++... +..++. ...+++ ++.-+..+.+.+..++
T Consensus 356 ElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~-v~~~l~~y~~nPS~nWk~kd~aiyL~tala 434 (960)
T KOG1992|consen 356 ELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSE-VQRLLDQYSKNPSGNWKKKDRAIYLVTALA 434 (960)
T ss_pred HHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHhccCCCccccccchhhhhhHHHH
Confidence 35555566666666766666654 5678888889887766555554332 233333 333331 4455566777777775
Q ss_pred cCCHHHHH------------HHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC
Q 043676 286 AGNREQIQ------------AVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC 353 (446)
Q Consensus 286 ~~~~~~~~------------~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~ 353 (446)
........ .+....++|.|..--....|-++..++.-+.-+=..-.+++. +. .++.+++.++.
T Consensus 435 ik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~l---m~--~~p~li~~L~a 509 (960)
T KOG1992|consen 435 IKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHL---MA--LLPRLIRFLEA 509 (960)
T ss_pred hhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHH---HH--HHHHHHHhccC
Confidence 42221111 111112222221100123455555555444433222223332 33 68999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhhh
Q 043676 354 SDPEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 354 ~~~~~~~~~~~~l~~l~~~~~~ 375 (446)
+..-+..+|..++.+++...++
T Consensus 510 ~s~vvhsYAA~aiEkil~vre~ 531 (960)
T KOG1992|consen 510 ESRVVHSYAAIAIEKLLTVREN 531 (960)
T ss_pred cchHHHHHHHHHHHhccccccC
Confidence 9999999999999999887776
No 296
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=88.41 E-value=6 Score=34.71 Aligned_cols=137 Identities=11% Similarity=0.121 Sum_probs=74.2
Q ss_pred CcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhh-HHHHhcCChHHHHHHh----c--------cCchHHHHHHHHHH
Q 043676 214 GVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQT-QCIINHGAVPYLLDML----V--------HNHEEIIKKEISWI 280 (446)
Q Consensus 214 ~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~~~~~l~~~l----~--------~~~~~~v~~~a~~~ 280 (446)
-++|.++.++++.++.++..++.++..+....+... ..+...|..+.+.+.+ . .. ...+-..+.-+
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~-s~~Ll~~ay~~ 197 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDE-SLELLQAAYPA 197 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchh-hHHHHHHHHHH
Confidence 568999999999999999999999999987655433 2244666655544433 2 12 44566666666
Q ss_pred HHHHhc-----CC---HHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhccc
Q 043676 281 ISNITA-----GN---REQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL 352 (446)
Q Consensus 281 l~~l~~-----~~---~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~ 352 (446)
+..++. .+ ......++..|++..+...-+...+.++...+..+..+...-+....+++-+ .++.+.+.+.
T Consensus 198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~r--ii~~l~~~l~ 275 (282)
T PF10521_consen 198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQR--IIPVLSQILE 275 (282)
T ss_pred HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHHHHhc
Confidence 666643 11 1111222222333322222211235566666655555544333333333332 4555555444
Q ss_pred C
Q 043676 353 C 353 (446)
Q Consensus 353 ~ 353 (446)
+
T Consensus 276 n 276 (282)
T PF10521_consen 276 N 276 (282)
T ss_pred C
Confidence 4
No 297
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=88.31 E-value=8.7 Score=29.54 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=55.5
Q ss_pred hHHHHhccc-CCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHH-HHHhhcC---CCHHHHHHHH
Q 043676 344 VKPLCDLLL-CSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEK-IENLQSH---DNNEIHEKSV 418 (446)
Q Consensus 344 i~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~l~~~---~~~~v~~~a~ 418 (446)
+..|..=+. +.++.++..++..|..+++.+... |...+..-++++. |..+... .+.+|+++..
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~------------fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil 107 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR------------FHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVL 107 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH------------HHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHH
Confidence 333444344 568889999999999999988775 6778888888887 8888753 3468999999
Q ss_pred HHHHHhcCCCC
Q 043676 419 KIFKTYWCGRN 429 (446)
Q Consensus 419 ~~l~~~~~~~~ 429 (446)
.++..+...-.
T Consensus 108 ~li~~W~~~f~ 118 (141)
T cd03565 108 ALIQAWADAFR 118 (141)
T ss_pred HHHHHHHHHhC
Confidence 99998865443
No 298
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=88.29 E-value=13 Score=30.36 Aligned_cols=71 Identities=21% Similarity=0.263 Sum_probs=56.1
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHH
Q 043676 46 VVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC 122 (446)
Q Consensus 46 ~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~ 122 (446)
.++.++++..+++ ..++..|+..+..+....--+- ...+|.++.+..++++.++..|...+..+.+..+..
T Consensus 9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 5777888888888 8999999999988876221111 135799999999999999999999999998666554
No 299
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=88.07 E-value=1.7 Score=36.25 Aligned_cols=79 Identities=22% Similarity=0.264 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHcCCChhhHHHHHhcCC-------hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChH-HHHHHHHcCC
Q 043676 61 QLQYEAAWVLINIASGTSENTNVVIDHGA-------VPIFVKLLSS-PSDDVREQAVWALGNVAGDSPR-CRDLVLSQGA 131 (446)
Q Consensus 61 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-------i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~ 131 (446)
.-|..|+.+|++++- .+.+.+.+...+- +..|.+++.. .++-.|+.|+-.|.+++..+.. ++....+.+.
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 468999999999997 5555555554443 3445555554 6788999999999999976654 4566778888
Q ss_pred hHHHHHHhc
Q 043676 132 LIPLLAELN 140 (446)
Q Consensus 132 i~~l~~~l~ 140 (446)
+..|+.++.
T Consensus 218 i~~Li~FiE 226 (257)
T PF12031_consen 218 ISHLIAFIE 226 (257)
T ss_pred HHHHHHHHH
Confidence 999999993
No 300
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=87.60 E-value=26 Score=33.30 Aligned_cols=157 Identities=15% Similarity=0.126 Sum_probs=114.8
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcccc---chhHHHHHHHHHHHhhcCCCCCCh
Q 043676 91 PIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA---KLSMLRNATRTLSNFCRGKPEPPF 167 (446)
Q Consensus 91 ~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~~ 167 (446)
..+...+.+++..-+..++..+..++.+.. ....+....++..|.+++.+.. ..++....+.+++.+..+.-....
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~~-fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLDPT-FAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccccHH-HHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 567777888888888788888888885544 5566667778889999885433 457778888888888777532222
Q ss_pred hhhhhhHHHHHHhhc--CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCC
Q 043676 168 DQVRPALPALAQLVH--SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGD 245 (446)
Q Consensus 168 ~~~~~~~~~l~~ll~--~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~ 245 (446)
.....++.....+.. ..+..+...++..+-++...++...+.+.+.--+..++..++..+..+...|...+..+....
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a 244 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKA 244 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhC
Confidence 222344444444443 336778889999999999888877777888888999999999999888888888888887655
Q ss_pred chh
Q 043676 246 DFQ 248 (446)
Q Consensus 246 ~~~ 248 (446)
++.
T Consensus 245 ~~~ 247 (713)
T KOG2999|consen 245 PDD 247 (713)
T ss_pred ChH
Confidence 543
No 301
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.60 E-value=40 Score=37.40 Aligned_cols=213 Identities=16% Similarity=0.097 Sum_probs=107.8
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHH
Q 043676 47 VPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDL 125 (446)
Q Consensus 47 ~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~ 125 (446)
...++..+..++ +..+..+..+++.++...++. .++ .+..+..++-+.+ .++..|..-..+++.+-.........
T Consensus 878 ~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~~--~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 878 LTLIVNSLINPN-PKLRCAAAEALARLAQVVGSA--PFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHhhhhccCC-hHHHHHHHHHHHHHHHhcccc--chH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 444555566667 788888888888877622111 111 1234555555555 45555555555555554221111111
Q ss_pred HHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCC---CHhHHHH----------
Q 043676 126 VLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHSN---DEDVLTY---------- 191 (446)
Q Consensus 126 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~---~~~v~~~---------- 191 (446)
-.....+..+..+..++.++.++..++.++..+.... |.. .......+..+..++.+. ..++...
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~-~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMF-RVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCcee-hhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchh
Confidence 1112235566777766677799999999999988776 333 333334444444444322 2222222
Q ss_pred ---HHHHHHHhccCCcH--HHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhc
Q 043676 192 ---ACWSLSYLADGTND--KIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLV 266 (446)
Q Consensus 192 ---~~~~l~~l~~~~~~--~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 266 (446)
...+++.=...+.. ... .+....+-...-++.++++-++..+..++.++--..+..... .-++..+..++.
T Consensus 1033 ~~alittlgpeL~~N~~~d~t~-~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTS-TLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLLS 1108 (2067)
T ss_pred HHHHHHhcccccCCCCcccchh-HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHhc
Confidence 22222222222221 222 222223333344456678888899999998886555432211 123444555554
Q ss_pred cC
Q 043676 267 HN 268 (446)
Q Consensus 267 ~~ 268 (446)
++
T Consensus 1109 s~ 1110 (2067)
T KOG1822|consen 1109 SS 1110 (2067)
T ss_pred ch
Confidence 44
No 302
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=87.42 E-value=23 Score=32.34 Aligned_cols=93 Identities=15% Similarity=0.088 Sum_probs=58.6
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhC----------CCCHHHHHHHHHHHHHhh
Q 043676 47 VPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLS----------SPSDDVREQAVWALGNVA 116 (446)
Q Consensus 47 ~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~----------~~~~~v~~~a~~~l~~l~ 116 (446)
-..++..|..+..+.-+...+..+.-++. +...-..+.....++.|+.+-+ .++..+.-.++.+|+|+.
T Consensus 47 ~e~i~~Vle~~~p~t~~v~~LetvrILSR-dk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv 125 (532)
T KOG4464|consen 47 GERIFEVLENGEPLTHRVVCLETVRILSR-DKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV 125 (532)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhc-cccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH
Confidence 34455666655534455556666666665 3332222222222344444321 134578889999999999
Q ss_pred CCChHHHHHHHHcCChHHHHHHhc
Q 043676 117 GDSPRCRDLVLSQGALIPLLAELN 140 (446)
Q Consensus 117 ~~~~~~~~~~~~~~~i~~l~~~l~ 140 (446)
..++.+++...+......+++.+.
T Consensus 126 f~Sq~~q~~~~~~~~~~~ll~~v~ 149 (532)
T KOG4464|consen 126 FHSQRAQDLFLENPLTGKLLQRVL 149 (532)
T ss_pred hccHHHHHHHHhhhhHHHHHHHHH
Confidence 999999999999888888887764
No 303
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=87.15 E-value=33 Score=33.90 Aligned_cols=136 Identities=15% Similarity=0.144 Sum_probs=82.1
Q ss_pred hhhHHHHHHhhcCC----CHhHHHHHHHHHHHhcc----CCcHHHHHHHHhCcHHHHHHhcC----CCCccchhHHHHHH
Q 043676 171 RPALPALAQLVHSN----DEDVLTYACWSLSYLAD----GTNDKIQAVIEAGVCPRLVELLG----HPSPSVLTPALRTV 238 (446)
Q Consensus 171 ~~~~~~l~~ll~~~----~~~v~~~~~~~l~~l~~----~~~~~~~~~~~~~~~~~l~~ll~----~~~~~~~~~a~~~l 238 (446)
...+..+..++.++ .+.++..++-+++.+.. ..+.... .....+++.+...+. ..+...+..++.+|
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL 470 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPD-FVLEELLKYLHELLQQAVSKGDEEEIQLYLKAL 470 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhh
Confidence 34566677777643 56777777777777663 2211001 111244555555443 34555667788999
Q ss_pred HHhhcCCchhhHHHHhcCChHHHHHHhc--cCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CCcc
Q 043676 239 GNIVTGDDFQTQCIINHGAVPYLLDMLV--HNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN--AEFD 314 (446)
Q Consensus 239 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~ 314 (446)
+|+.... .+..+...+. ...+..+|..|+++|..++...+.. +-+.++.++.+ .+++
T Consensus 471 GN~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~E 531 (574)
T smart00638 471 GNAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPE 531 (574)
T ss_pred hccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChH
Confidence 9887622 2233444443 2225789999999999887644443 44556666665 3678
Q ss_pred hHHHHHHHHHHh
Q 043676 315 TKKEAAWAISNA 326 (446)
Q Consensus 315 v~~~a~~aL~~l 326 (446)
+|..|+.+|...
T Consensus 532 vRiaA~~~lm~t 543 (574)
T smart00638 532 VRMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHHHhc
Confidence 998888777655
No 304
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=87.09 E-value=10 Score=27.92 Aligned_cols=71 Identities=15% Similarity=0.191 Sum_probs=51.8
Q ss_pred ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHh-----h-cCCCHHHHHH
Q 043676 343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENL-----Q-SHDNNEIHEK 416 (446)
Q Consensus 343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l-----~-~~~~~~v~~~ 416 (446)
++..|..-+.+.++.++..++..|..+++.+... |...+.....+..+..+ . ...+..|+++
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~------------f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k 105 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER------------FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREK 105 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH------------HHHHHHHhHHHHHHHHhhccccccCCCChHHHHH
Confidence 3555666677789999999999999999988775 56666666655555332 2 2346789999
Q ss_pred HHHHHHHhc
Q 043676 417 SVKIFKTYW 425 (446)
Q Consensus 417 a~~~l~~~~ 425 (446)
+..+++.+.
T Consensus 106 ~~~l~~~w~ 114 (115)
T cd00197 106 AIELVQLWA 114 (115)
T ss_pred HHHHHHHHh
Confidence 999888654
No 305
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=87.06 E-value=7.5 Score=27.55 Aligned_cols=93 Identities=14% Similarity=0.168 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHH-hcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHH
Q 043676 17 SLQLEATTLSRKLLSFDRNPPIEKVI-QSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVK 95 (446)
Q Consensus 17 ~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 95 (446)
++|..|+..+..=.... --....+. ....+..|++.++.+. .-.+..++..+..++. ++.....+.+-|+.+.|.+
T Consensus 2 EIR~RAL~~I~~Kl~~~-Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~k 78 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHG-LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSK 78 (98)
T ss_pred hHHHHHHHHHHHHHHhc-cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHH
Confidence 45666666554322221 22222233 4567888889999888 5688999999999988 7888888888999888777
Q ss_pred hhCCCCHHHHHHHHHHH
Q 043676 96 LLSSPSDDVREQAVWAL 112 (446)
Q Consensus 96 ~L~~~~~~v~~~a~~~l 112 (446)
+=...++..+...-.++
T Consensus 79 lr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 79 LRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 76666666665544433
No 306
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=86.61 E-value=10 Score=28.20 Aligned_cols=72 Identities=11% Similarity=0.123 Sum_probs=51.7
Q ss_pred ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHc-CChHHHHhcccCC--------CHHHHHHHHHHHHHHH
Q 043676 300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVRE-GCVKPLCDLLLCS--------DPEIVTVCLIGLENIL 370 (446)
Q Consensus 300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~i~~L~~ll~~~--------~~~~~~~~~~~l~~l~ 370 (446)
++..|.+=|++.++.|+.+++..|..++..+.++....+... ..|..+.++-... ...|+..|-+++.-++
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 566788888888999999999999999999887777665543 2344444443322 2357888888777766
Q ss_pred H
Q 043676 371 K 371 (446)
Q Consensus 371 ~ 371 (446)
.
T Consensus 119 ~ 119 (122)
T cd03572 119 S 119 (122)
T ss_pred c
Confidence 4
No 307
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=85.87 E-value=14 Score=28.41 Aligned_cols=74 Identities=9% Similarity=0.042 Sum_probs=58.0
Q ss_pred ChHHHHHHHh-cCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHH-HHhcccC---CCHHHHHHHHHHHHHHHHhh
Q 043676 300 LIRPIVNLLQ-NAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKP-LCDLLLC---SDPEIVTVCLIGLENILKVG 373 (446)
Q Consensus 300 ~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~-L~~ll~~---~~~~~~~~~~~~l~~l~~~~ 373 (446)
++..+.+-+. +.++.+...|+..|-.+..++.......+...+++.. |..++.. .+..|+..++..+.......
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 4455555555 4588899999999999999988888888888889987 8999863 34589999999988876543
No 308
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=85.67 E-value=32 Score=32.39 Aligned_cols=274 Identities=13% Similarity=0.139 Sum_probs=120.6
Q ss_pred CHHHHHHhhcCC---CChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhC----
Q 043676 46 VVPRFVEFLMRE---DYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAG---- 117 (446)
Q Consensus 46 ~~~~L~~ll~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~---- 117 (446)
++..|..++..+ .++-+.....+++..+-..-......+++. .+..+....++ .+|..-.....+++.+..
T Consensus 27 ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~ 105 (435)
T PF03378_consen 27 LLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCE 105 (435)
T ss_dssp HHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-G
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccC
Confidence 455556666542 224455555555555444333333333322 33444444455 346655555555555542
Q ss_pred CChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC-CCChhhhhhhHHHHHHh-hcCCCHhHHHHHHHH
Q 043676 118 DSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP-EPPFDQVRPALPALAQL-VHSNDEDVLTYACWS 195 (446)
Q Consensus 118 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~l~~l-l~~~~~~v~~~~~~~ 195 (446)
.++... .-++...++.+...| ...-.+..-.+...|+.+.+..+ ..........+|.+..- +-.....+ ....+.
T Consensus 106 ~~~~~v-~~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrL 182 (435)
T PF03378_consen 106 ADPEAV-SQFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRL 182 (435)
T ss_dssp GGHH----HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHH
T ss_pred CChhHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHH
Confidence 223211 123445677888888 44445777778888887776654 11112223333333211 11111111 222223
Q ss_pred HHHhccCCcHHHHHHHHh----CcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhh-HHHHhcCChHHHHHHhccCch
Q 043676 196 LSYLADGTNDKIQAVIEA----GVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQT-QCIINHGAVPYLLDMLVHNHE 270 (446)
Q Consensus 196 l~~l~~~~~~~~~~~~~~----~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~ 270 (446)
|.......+... ... +++..+-+++.+... -..+...|..+..+.+... +..+ ..++..++.-|++...
T Consensus 183 L~a~i~k~~~~i---~~~~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl-~~I~~lll~RLq~skT 256 (435)
T PF03378_consen 183 LQAYIKKDPSFI---VANNQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYL-KQIFTLLLTRLQSSKT 256 (435)
T ss_dssp HHHHHHHHGGG-------S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGH-HHHHHHHHHHHHHC--
T ss_pred HHHHHHhCchhh---cchhhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHhhCCc
Confidence 333222222111 111 333444455555432 3457777777766554321 1111 2245556666665535
Q ss_pred HHHHHHHHHHHHHHhc-CCHHHHHHHHH---cCChHHHHHH-----Hhc-CCcchHHHHHHHHHHhccC
Q 043676 271 EIIKKEISWIISNITA-GNREQIQAVID---AGLIRPIVNL-----LQN-AEFDTKKEAAWAISNATSG 329 (446)
Q Consensus 271 ~~v~~~a~~~l~~l~~-~~~~~~~~~~~---~~~i~~L~~l-----l~~-~~~~v~~~a~~aL~~l~~~ 329 (446)
.+.+..-+..++.++. .+++..-..++ .|++..+..- ++. ..+.-|+.++-+++++...
T Consensus 257 ~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e 325 (435)
T PF03378_consen 257 EKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE 325 (435)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence 5666555555565543 34444444443 4544444431 111 1233466666677776543
No 309
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=84.93 E-value=29 Score=31.71 Aligned_cols=153 Identities=15% Similarity=0.026 Sum_probs=87.2
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc----------CCCHhHHHHHHHHHHHhccCC
Q 043676 134 PLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH----------SNDEDVLTYACWSLSYLADGT 203 (446)
Q Consensus 134 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~----------~~~~~v~~~~~~~l~~l~~~~ 203 (446)
.++..+.+..-...+..++.++.-|+++...-.-.......+.|..+.+ ..+..+...++.||+|+..++
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S 128 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS 128 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence 4555553333345555666777777776643333334444444444432 235688999999999999998
Q ss_pred cHHHHHHHHhCcHHHHHHhcCCC----C-ccchhHHHHHHHHhhcCCchhh-HHHHhcCChHHHHHHhccCc--------
Q 043676 204 NDKIQAVIEAGVCPRLVELLGHP----S-PSVLTPALRTVGNIVTGDDFQT-QCIINHGAVPYLLDMLVHNH-------- 269 (446)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~ll~~~----~-~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~~~~~l~~~l~~~~-------- 269 (446)
+.......+......+.+.+... - ..+...-++.|.-+..-....+ +.+.+.++++.+-+++.+.-
T Consensus 129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~ 208 (532)
T KOG4464|consen 129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV 208 (532)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence 87777777777666666655431 1 1222223333333333233333 33447778888888875421
Q ss_pred ------hHHHHHHHHHHHHHHhc
Q 043676 270 ------EEIIKKEISWIISNITA 286 (446)
Q Consensus 270 ------~~~v~~~a~~~l~~l~~ 286 (446)
+....-+++.++.|++.
T Consensus 209 ~~l~pqe~n~a~EaLK~~FNvt~ 231 (532)
T KOG4464|consen 209 PPLNPQETNRACEALKVFFNVTC 231 (532)
T ss_pred CCCCHHHHHHHHHHHHHHhheee
Confidence 12334456777777765
No 310
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.79 E-value=46 Score=33.40 Aligned_cols=311 Identities=16% Similarity=0.145 Sum_probs=160.2
Q ss_pred HHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCC--ChhhHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHh
Q 043676 39 EKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASG--TSENTNVVIDHGAVPIFVKLLSSP-SDDVREQAVWALGNV 115 (446)
Q Consensus 39 ~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~~L~~~-~~~v~~~a~~~l~~l 115 (446)
+.......+|.+- ...++.--+|+..+|.++.-.+. ..+.+..+ -..+++++++. |.-++-.++.++.-.
T Consensus 482 ~~Wl~~~llpEl~--~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~-----Y~a~lnLL~d~~D~vV~Ltt~~tlkl~ 554 (978)
T KOG1993|consen 482 DKWLQEALLPELA--NDHGNSRIIRRRVAWILGQWVSVQQKLELKPLL-----YCAFLNLLQDQNDLVVRLTTARTLKLV 554 (978)
T ss_pred HHHHHHhhCHHhh--hcccchhHHHHHHHHHHhhhhheechHhHHHHH-----HHHHHHhcCccccceeehHHHHHHHHh
Confidence 3344445566554 23344345789999999998761 12223222 36788889886 667788888888877
Q ss_pred hCCChHHHHHHHH--cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc------CCCHh
Q 043676 116 AGDSPRCRDLVLS--QGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH------SNDED 187 (446)
Q Consensus 116 ~~~~~~~~~~~~~--~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~------~~~~~ 187 (446)
..+-.-..+.+.. ......+.+++..-...+.+..++.+++.+....... .......+++++. .+.+-
T Consensus 555 vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~----I~P~~~~ivq~lp~LWe~s~~e~l 630 (978)
T KOG1993|consen 555 VDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEH----IAPYASTIVQYLPLLWEESEEEPL 630 (978)
T ss_pred hhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHhhhccCcH
Confidence 7432211112111 2233344555544455677778888888876653111 1122222333322 34567
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCcc---chhHHHHHHHHhhcCCchhhHHHHhcCChHHHHH
Q 043676 188 VLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-PSPS---VLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLD 263 (446)
Q Consensus 188 v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~---~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ 263 (446)
++...+.++.++...-......+. .++-.++++-.+ .+++ ..+.+...-.....+.+.....+. +++|.+..
T Consensus 631 Lr~alL~~L~~lV~alg~qS~~~~--~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~ 706 (978)
T KOG1993|consen 631 LRCALLATLRNLVNALGAQSFEFY--PFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLY 706 (978)
T ss_pred HHHHHHHHHHHHHHHhccCCccch--HHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHH
Confidence 788888888888754222221111 233334444333 2222 222233222222222333333333 36777887
Q ss_pred HhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcC
Q 043676 264 MLVHNHEEIIKKEISWIISNITA-GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREG 342 (446)
Q Consensus 264 ~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~ 342 (446)
++... ... ...+..++....- .++.... -...|+.+.+.+++.+-..+-....+..+..+... ......+...+
T Consensus 707 ~iE~s-te~-L~t~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t--~~il~~~~~~~ 781 (978)
T KOG1993|consen 707 IIEQS-TEN-LPTVLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKT--NPILGSLLFSP 781 (978)
T ss_pred HHHhh-hhh-HHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--hHHHHhhhcch
Confidence 77655 333 3334444444332 3333222 22347888888888766666666666677666653 22344444455
Q ss_pred ChHHHHhcc--cCCCHHHHHHHHHHHHHH
Q 043676 343 CVKPLCDLL--LCSDPEIVTVCLIGLENI 369 (446)
Q Consensus 343 ~i~~L~~ll--~~~~~~~~~~~~~~l~~l 369 (446)
+++.+..-+ +.+.|.+...-+.++.++
T Consensus 782 ~L~~lf~~I~~~~~yP~~~~~yl~vvaRi 810 (978)
T KOG1993|consen 782 LLSRLFLSIAENDKYPYVMGEYLLVVARI 810 (978)
T ss_pred hhHHHHHHHHhCCCCchhHHHHHHHHHHH
Confidence 566555433 334444444444444444
No 311
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=84.52 E-value=12 Score=35.23 Aligned_cols=102 Identities=11% Similarity=0.138 Sum_probs=56.6
Q ss_pred chhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC-CHhHHHHHHHHHHHhccC----CcHHHHHHHHhCcHHH
Q 043676 144 KLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSN-DEDVLTYACWSLSYLADG----TNDKIQAVIEAGVCPR 218 (446)
Q Consensus 144 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~~~~~l~~l~~~----~~~~~~~~~~~~~~~~ 218 (446)
++-+.+...+++..+-..-..........+...+....+++ ++..-.+...+++.+.+. +++.. .-++..++|.
T Consensus 43 NeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v-~~~E~~L~P~ 121 (435)
T PF03378_consen 43 NEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAV-SQFEEALFPP 121 (435)
T ss_dssp -HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH----HHHHHHHHH
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHH-HHHHHHHHHH
Confidence 45566666666555544321111112223333333333444 677777777776666533 22222 2455688899
Q ss_pred HHHhcCCCCccchhHHHHHHHHhhcCCc
Q 043676 219 LVELLGHPSPSVLTPALRTVGNIVTGDD 246 (446)
Q Consensus 219 l~~ll~~~~~~~~~~a~~~l~~l~~~~~ 246 (446)
+..+|+.+-.+....+..+++.+....+
T Consensus 122 f~~ILq~dV~EF~PYvfQIla~Lle~~~ 149 (435)
T PF03378_consen 122 FQEILQQDVQEFIPYVFQILAQLLELRP 149 (435)
T ss_dssp HHHHHHTT-TTTHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999988878888889999888875444
No 312
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=84.49 E-value=45 Score=38.48 Aligned_cols=251 Identities=14% Similarity=0.082 Sum_probs=139.7
Q ss_pred HHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC----CCh--hhhhhhHHHHH
Q 043676 105 REQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPE----PPF--DQVRPALPALA 178 (446)
Q Consensus 105 ~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~----~~~--~~~~~~~~~l~ 178 (446)
...|.+++.++-........ .+..++.......+.+++..+..++..+...... ... ......+..+.
T Consensus 461 ~~~a~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll 534 (2341)
T KOG0891|consen 461 IQLAFKTLGGFKFSGYSLTL------FVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALL 534 (2341)
T ss_pred HHHHHHHHhhhhhhhhhHHH------HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHH
Confidence 44566666666532211111 1233333333566788888886666655544322 111 11334444444
Q ss_pred Hhhc-CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCC
Q 043676 179 QLVH-SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGA 257 (446)
Q Consensus 179 ~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~ 257 (446)
.+-. .++++++......+. ........+.+.+..+...+....-..+..+...+++++..++......+....
T Consensus 535 ~~aia~~~~~i~~~v~~~l~------~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~ 608 (2341)
T KOG0891|consen 535 TVAIADTDPDIRIRVLSSLN------ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTL 608 (2341)
T ss_pred HHhccCCCcchhhhHHhhhc------cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHH
Confidence 3332 457777777766665 122233445566666777777778888999999999999988866555554444
Q ss_pred hHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHH
Q 043676 258 VPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKH 337 (446)
Q Consensus 258 ~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 337 (446)
+...-.+..+. -..++..++.-+..+....+..+...+. ..+..++..+.+.+..+...+..++..++..+..+. ..
T Consensus 609 l~~~s~l~~sg-~~r~~~~~a~~~~~~i~~~~~~i~~~v~-~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~-~~ 685 (2341)
T KOG0891|consen 609 LELLTELEFSG-MARTKEESAKLLCELIISSPVLISPYVG-PILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEM-VK 685 (2341)
T ss_pred HHHhchhhhcc-hHHhHHHHHHHhhHHHHHHHHHHHhhcC-chHHHHHHHHhccchhhHHHHHHHHHHHHHhccchh-hh
Confidence 44444444444 4444455544444444444444443333 455667777777888888889999999887654222 11
Q ss_pred HHHcCChHHHHhcccC-CCHHHHHHHHHHHHHHHH
Q 043676 338 LVREGCVKPLCDLLLC-SDPEIVTVCLIGLENILK 371 (446)
Q Consensus 338 l~~~~~i~~L~~ll~~-~~~~~~~~~~~~l~~l~~ 371 (446)
... ..++.+.+.+.+ .+..-+..+++.+.++..
T Consensus 686 ~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s 719 (2341)
T KOG0891|consen 686 WVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLES 719 (2341)
T ss_pred ccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence 122 234444444432 334445556666666554
No 313
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=84.10 E-value=4.3 Score=35.33 Aligned_cols=109 Identities=16% Similarity=0.203 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcC--CHHHHHHhhcCC----CChHHHHHHHHHHHHHcCCChhhH-HHHHh
Q 043676 14 DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSG--VVPRFVEFLMRE----DYPQLQYEAAWVLINIASGTSENT-NVVID 86 (446)
Q Consensus 14 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~--~~~~L~~ll~~~----~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~ 86 (446)
..+..++.+++.++|+... ...+..+.... .+...+..+... + ..++..++..+.|++......+ ..-..
T Consensus 122 ~~~~~~ml~lR~l~NlF~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-kn~~~A~ATl~~Nlsv~~~~~~~~~~~~ 198 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSH--PPGRQLLLSHFDSSILELLSSLLSSLLDSN-KNVRIALATLLLNLSVLLHKNRSDEEWQ 198 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTS--CCCHHHHHCTHHTCHHHHCHCCCTTS-HHH-HHHHHHHHHHHHHHHHHHHHCTS-CCHH
T ss_pred CcHHHHHHHHHHHHHhhCC--CccHHHHHhcccchHHHHHHHHhhcccccc-HHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 5688899999999998876 45555555432 233333333333 4 7899999999999975111111 00001
Q ss_pred cCChHHHHH-hhCC-CCHHHHHHHHHHHHHhhCCChHHHHH
Q 043676 87 HGAVPIFVK-LLSS-PSDDVREQAVWALGNVAGDSPRCRDL 125 (446)
Q Consensus 87 ~~~i~~L~~-~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~ 125 (446)
...+..+.+ +... .+++....++.+++++....+.....
T Consensus 199 ~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~ 239 (268)
T PF08324_consen 199 SELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQL 239 (268)
T ss_dssp HHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHH
Confidence 123455666 3333 68999999999999999766654444
No 314
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=83.98 E-value=31 Score=30.77 Aligned_cols=168 Identities=11% Similarity=0.088 Sum_probs=82.6
Q ss_pred CHHHHHHhhcCCC---ChHHHHHHHHHHHHHcCCChhhHHHHHhcC-----------ChHHHHHhhCC------CCHHHH
Q 043676 46 VVPRFVEFLMRED---YPQLQYEAAWVLINIASGTSENTNVVIDHG-----------AVPIFVKLLSS------PSDDVR 105 (446)
Q Consensus 46 ~~~~L~~ll~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-----------~i~~L~~~L~~------~~~~v~ 105 (446)
++..|+.++-..+ .-++|..|+.|+.....++++.+..+++.- ....++..|-+ .++--.
T Consensus 35 vi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~ 114 (312)
T PF04869_consen 35 VIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRC 114 (312)
T ss_dssp HHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHH
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHH
Confidence 3444444443222 368999999999999998899888776431 01123332221 122222
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc---
Q 043676 106 EQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH--- 182 (446)
Q Consensus 106 ~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~--- 182 (446)
-.|+.++.++..+++..++...+ + ........ ......++.+..+|.
T Consensus 115 wfAa~il~hll~dn~~~Ke~al~-------------------------V-~~~~~~~g----e~~vtliq~v~~lL~~~l 164 (312)
T PF04869_consen 115 WFAAVILMHLLRDNPEAKEQALR-------------------------V-TEGDESSG----EEPVTLIQTVSELLIASL 164 (312)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHTT----------------------------EE--STT----S--EEHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHc-------------------------c-cCCCCCCC----CCcccHHHHHHHHHHhhh
Confidence 23444444444444444333322 1 00000001 111123333433332
Q ss_pred --CCCHhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhcCC---CCccchhHHHHHHHHhhc
Q 043676 183 --SNDEDVLTYACWSLSYLADGTNDKIQAVIEA-GVCPRLVELLGH---PSPSVLTPALRTVGNIVT 243 (446)
Q Consensus 183 --~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~---~~~~~~~~a~~~l~~l~~ 243 (446)
+.++.++..-+..|..-...++.....+... ..++.|+..... .+.-++-.++..|+-.-.
T Consensus 165 ~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 165 RRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp --T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred hcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 3467777777777777667777777777765 478888887543 233355556666655543
No 315
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=83.51 E-value=13 Score=33.37 Aligned_cols=78 Identities=8% Similarity=0.026 Sum_probs=64.2
Q ss_pred CChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhccc-CCCHHHHHHHHHHHHHHHHhhhhh
Q 043676 299 GLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL-CSDPEIVTVCLIGLENILKVGEAE 376 (446)
Q Consensus 299 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~ 376 (446)
.++..+.+-+.+.++.|...|+..+..++.++....+..+....+...|..++. ...+.|..+.-..+..+.+...++
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~D 123 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKD 123 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence 367788888999999999999999999999888888888888888888888888 567888888777777776644443
No 316
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=82.28 E-value=38 Score=34.58 Aligned_cols=141 Identities=18% Similarity=0.160 Sum_probs=85.9
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHH-
Q 043676 7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVI- 85 (446)
Q Consensus 7 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~- 85 (446)
+.+.+.++++..-...+.++..+..-..-+... ...-++.-..-.+..- ..+......+|..++.-+++....+.
T Consensus 446 l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~~L~~l~~ 521 (727)
T PF12726_consen 446 LLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSL-GQITDLISQILERLSDFDPSHLKELLS 521 (727)
T ss_pred HHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHc
Confidence 344455667766666666666655443211111 1111222222223333 46677788899999987777777666
Q ss_pred hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676 86 DHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK 162 (446)
Q Consensus 86 ~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 162 (446)
+.+....+..++-+++.++.+.|..++........ | .+.+-.++ +..-........+.|..+....
T Consensus 522 d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~--R--------~e~i~~ll-~~~~~~tL~ai~~~l~~~~~~~ 587 (727)
T PF12726_consen 522 DPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG--R--------LEAIQALL-QSNFSPTLSAINWSLRQLTKLK 587 (727)
T ss_pred CcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc--H--------HHHHHHHH-HHhHHHHHHHHHHHHHHHHhhh
Confidence 46889999999999999999999999999884322 1 22333334 2222345566667777766554
No 317
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=82.12 E-value=19 Score=37.92 Aligned_cols=235 Identities=17% Similarity=0.169 Sum_probs=130.3
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHH--------hhcCCCChHHHHHHHHHHHHHcC
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVE--------FLMREDYPQLQYEAAWVLINIAS 75 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~--------ll~~~~~~~~~~~a~~~L~~l~~ 75 (446)
+..|++.+-++...+|.-++..++.++......-....++.-.+..+.- .....-..-+++.++++|+.+..
T Consensus 79 ~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~ 158 (1549)
T KOG0392|consen 79 LEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLK 158 (1549)
T ss_pred HHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHH
Confidence 4567777788889999999999998877542222222222221211111 11111123688999999998887
Q ss_pred CChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHH--HcCChHHHHHHhccccchhHHHHHHH
Q 043676 76 GTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVL--SQGALIPLLAELNEHAKLSMLRNATR 153 (446)
Q Consensus 76 ~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~i~~l~~~l~~~~~~~~~~~a~~ 153 (446)
+-.+... ...++.+.+++..++.+++...+..+..... ..++.+. -..+++..+..+ .+.+..++..+..
T Consensus 159 ~~~~s~~----~~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~aa~ 230 (1549)
T KOG0392|consen 159 HMDESLI----KETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSVAAQ 230 (1549)
T ss_pred hhhhHhh----HHHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHHHHH
Confidence 3222111 1246788888888877777665555543331 1111111 011334445555 5667788888888
Q ss_pred HHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCH--hHHHHHHHHHHHhccCCcH---HHHHHHHhCcHHHHHHhcCCCCc
Q 043676 154 TLSNFCRGKPEPPFDQVRPALPALAQLVHSNDE--DVLTYACWSLSYLADGTND---KIQAVIEAGVCPRLVELLGHPSP 228 (446)
Q Consensus 154 ~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~v~~~~~~~l~~l~~~~~~---~~~~~~~~~~~~~l~~ll~~~~~ 228 (446)
.+.-...............++..+...+..-+. .-.......+..++..... ..+.-.+.|+++.+...+.+.=.
T Consensus 231 ~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~ 310 (1549)
T KOG0392|consen 231 FLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTIS 310 (1549)
T ss_pred HhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHH
Confidence 887766655444444455566666655543322 0111111222223322210 00111224888999999988888
Q ss_pred cchhHHHHHHHHhhcCCc
Q 043676 229 SVLTPALRTVGNIVTGDD 246 (446)
Q Consensus 229 ~~~~~a~~~l~~l~~~~~ 246 (446)
.++..++..+..+.+..+
T Consensus 311 sv~~a~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 311 SVRRAALETLAMLLEADD 328 (1549)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 888899998888876443
No 318
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.82 E-value=56 Score=32.17 Aligned_cols=290 Identities=11% Similarity=0.123 Sum_probs=144.4
Q ss_pred hHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 4 FPALVAGVW-SDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 4 i~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
++.+.+.|. +.|+..|.+|=..|+.+... ++ .+..-.-++..++.|--+..|..+|.++.+... ...
T Consensus 7 Le~lCk~LY~s~D~~~R~~AE~~L~e~s~s--pe---------clskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~lp 74 (1082)
T KOG1410|consen 7 LESLCKDLYESTDPTARHRAEKALAELSES--PE---------CLSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-PLP 74 (1082)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHccC--HH---------HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CCc
Confidence 344555555 67899999999999886543 22 233333445555556778888888888876332 111
Q ss_pred HHHhcCChHHHHHhhCCCCHH----HHHHHHHHHHHhhCCCh--HHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHH
Q 043676 83 VVIDHGAVPIFVKLLSSPSDD----VREQAVWALGNVAGDSP--RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLS 156 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~~~~~~----v~~~a~~~l~~l~~~~~--~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~ 156 (446)
.....++-..++.++....|. +...-+..++.+..... ..++...-.+.+....+.+ +..+.+--.-+...|.
T Consensus 75 l~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~iLs 153 (1082)
T KOG1410|consen 75 LEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQILS 153 (1082)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHHHHH
Confidence 111112335666666654333 34444444555542211 1111222233455666666 3333333334444555
Q ss_pred HhhcCC-------CCC---Ch------hhhhhhHHHHHHhhcCC-----CH----hHHHHHHHHHHHhc-----------
Q 043676 157 NFCRGK-------PEP---PF------DQVRPALPALAQLVHSN-----DE----DVLTYACWSLSYLA----------- 200 (446)
Q Consensus 157 ~l~~~~-------~~~---~~------~~~~~~~~~l~~ll~~~-----~~----~v~~~~~~~l~~l~----------- 200 (446)
.+..+- |.. .. ...-.++..-..+++.. +. .+...++..-.+..
T Consensus 154 qLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DE 233 (1082)
T KOG1410|consen 154 QLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDE 233 (1082)
T ss_pred HHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccccccc
Confidence 544321 000 00 00012222222333211 11 22222222211111
Q ss_pred --------cCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcC-----CchhhHHHHhcCChHHHHHHhcc
Q 043676 201 --------DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG-----DDFQTQCIINHGAVPYLLDMLVH 267 (446)
Q Consensus 201 --------~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~-----~~~~~~~~~~~~~~~~l~~~l~~ 267 (446)
..+......+.+...++.+.++..+-.+...+.|+.|+..+++. +...+...+ ..++.-...++.+
T Consensus 234 ssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl-~~Lv~Gvk~il~n 312 (1082)
T KOG1410|consen 234 SSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYL-QHLVEGVKRILEN 312 (1082)
T ss_pred ccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHhC
Confidence 01122333466677888999999888888899999999999852 222222222 1234444555554
Q ss_pred Cc---hHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 043676 268 NH---EEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQ 309 (446)
Q Consensus 268 ~~---~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 309 (446)
+. ++.--.+-|+.|+.+- ...+...+++-..-+.+++++.
T Consensus 313 p~~LsD~~nyHeFCRllaRlk--tNYQL~ELv~v~~Y~e~irLiA 355 (1082)
T KOG1410|consen 313 PQGLSDPANYHEFCRLLARLK--TNYQLGELVKVECYPEVIRLIA 355 (1082)
T ss_pred CcCCCCcchHHHHHHHHHHHH--hhhhhHhhhccCCcHHHHHHHH
Confidence 32 4455566777777772 3445555666555565665553
No 319
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.02 E-value=1.1e+02 Score=36.75 Aligned_cols=184 Identities=9% Similarity=0.018 Sum_probs=88.6
Q ss_pred hhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHh--Cc--HHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676 168 DQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEA--GV--CPRLVELLGHPSPSVLTPALRTVGNIVT 243 (446)
Q Consensus 168 ~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~--~~--~~~l~~ll~~~~~~~~~~a~~~l~~l~~ 243 (446)
....+.+..++.-+.+++..+++.+..+|.+++.........+++. .+ ++.+..-+.......+.-.+.++..+..
T Consensus 1122 ~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~ 1201 (3550)
T KOG0889|consen 1122 KSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLS 1201 (3550)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHH
Confidence 3446777788888888899999999999999986653222222221 11 1111111111122222222333333322
Q ss_pred CCch-------hhHHHHh---------cCChHHHHHHhccCc---hHHHHHHHHHHHHHHhcCCHHHH--HHHHHcCChH
Q 043676 244 GDDF-------QTQCIIN---------HGAVPYLLDMLVHNH---EEIIKKEISWIISNITAGNREQI--QAVIDAGLIR 302 (446)
Q Consensus 244 ~~~~-------~~~~~~~---------~~~~~~l~~~l~~~~---~~~v~~~a~~~l~~l~~~~~~~~--~~~~~~~~i~ 302 (446)
..+. ....... ..... +.+...... ....|..+..+++......+-.. ..-...+++.
T Consensus 1202 l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~ 1280 (3550)
T KOG0889|consen 1202 LGPCLFDFTEELYRLKRFLIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIA 1280 (3550)
T ss_pred cCCcccCchHHHHHHHHHHHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHH
Confidence 2221 1110000 00000 111111110 12235556666655544222111 1112346788
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC
Q 043676 303 PIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC 353 (446)
Q Consensus 303 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~ 353 (446)
.+.+.+....+++...+..++...... +...-....+.+.-+.|..+-+.
T Consensus 1281 v~fk~l~~~~~Ei~~~~~~~l~~v~~~-~~~~~ke~lq~~lrplL~~l~d~ 1330 (3550)
T KOG0889|consen 1281 VFFKSLYKRSSELIEVALEGLRKVLAQ-DVKLPKELLQSHLRPLLMNLSDH 1330 (3550)
T ss_pred HHHHHHcCChHHHHHHHHHHHHhhhhc-cccccHHHHHhhHHHHHHhhhHh
Confidence 888888888999999999999887654 23333333444433444444443
No 320
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=81.02 E-value=11 Score=27.60 Aligned_cols=70 Identities=7% Similarity=-0.016 Sum_probs=52.9
Q ss_pred ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhc-----c-cCCCHHHHHHHHHHHHHH
Q 043676 300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDL-----L-LCSDPEIVTVCLIGLENI 369 (446)
Q Consensus 300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l-----l-~~~~~~~~~~~~~~l~~l 369 (446)
++..+.+-+.+.++.++..|+..|-.+..++++.....+....++..++.+ . ...+..++..+...+..+
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 556666777788999999999999999999988888877776666666543 1 234678888888877654
No 321
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=80.89 E-value=22 Score=34.33 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=86.5
Q ss_pred CCHHHHHHhhc--C--------CCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHH
Q 043676 45 GVVPRFVEFLM--R--------EDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSP--SDDVREQAVWAL 112 (446)
Q Consensus 45 ~~~~~L~~ll~--~--------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~--~~~v~~~a~~~l 112 (446)
.++..|..+.. . +-.+.+|...+..|+.-.. .. -.....+......+.+. +..++..++..+
T Consensus 272 ~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~----Aa--~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~ 345 (501)
T PF13001_consen 272 DLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI----AA--TSFPNILQIVFDGLYSDNTNSKLKSLALQFI 345 (501)
T ss_pred HHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH----HH--hCCccHHHHHhccccCCccccccchhcchhh
Confidence 45666666665 2 1226677766666654321 00 01123344455555555 567777777777
Q ss_pred ---HHhhCCChH-----HHHHHHHcCChHHHHHHh----ccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHh
Q 043676 113 ---GNVAGDSPR-----CRDLVLSQGALIPLLAEL----NEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL 180 (446)
Q Consensus 113 ---~~l~~~~~~-----~~~~~~~~~~i~~l~~~l----~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~l 180 (446)
.......+. .+..+ ..++.+.+ ..- ....+...+..+..+|+.++...|.. ....-..+..+..-
T Consensus 346 ~~~~~~~~~~~~~~l~~l~~~i-~~~g~p~~-~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l-~~~d~~li~~LF~s 422 (501)
T PF13001_consen 346 RGSSWIFKHISPQILKLLRPVI-LSQGWPLI-QDSSSQSNSSEDIELRSLAYETLGLLAKRAPSL-FSKDLSLIEFLFDS 422 (501)
T ss_pred hcchHHhhhcCHHHHHHHHHHH-HhcCcccc-ccccccCCCcccHHHHHHHHHHHHHHHccCccc-ccccHHHHHHHHHH
Confidence 555433322 11222 22333322 100 02346788999999999999987443 22335677778887
Q ss_pred hcCCCHhHHHHHHHHHHHhccC
Q 043676 181 VHSNDEDVLTYACWSLSYLADG 202 (446)
Q Consensus 181 l~~~~~~v~~~~~~~l~~l~~~ 202 (446)
|..++++++..+-.+|..++..
T Consensus 423 L~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 423 LEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred hhCcchHHHHHHHHHHHHHHHH
Confidence 8888899999988888888743
No 322
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.69 E-value=1e+02 Score=34.54 Aligned_cols=230 Identities=12% Similarity=0.107 Sum_probs=120.3
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChh
Q 043676 90 VPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK-PEPPFD 168 (446)
Q Consensus 90 i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~ 168 (446)
...+...+..+++..+-.+..+++.++..-+... . -.+....++.-+....++-.|.--..+++.+-++. ......
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~-f--~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSAP-F--VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhccccc-h--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 4455555666788888888888888874332210 1 11134556666645555555555555566665554 333444
Q ss_pred hhhhhHHHHHHhhcCC-CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCc---cchhHHHHHHH-----
Q 043676 169 QVRPALPALAQLVHSN-DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSP---SVLTPALRTVG----- 239 (446)
Q Consensus 169 ~~~~~~~~l~~ll~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~---~~~~~a~~~l~----- 239 (446)
.....+..+..+-+++ ++.++..++.++..+..........+++ ..+..+..++.+..+ ++...--+++.
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence 5566677777777766 5699999999999988665544443333 344444455444221 11111111111
Q ss_pred -Hh-------hcCCch--hhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 043676 240 -NI-------VTGDDF--QTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQ 309 (446)
Q Consensus 240 -~l-------~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 309 (446)
++ ...+.. ... -.....+-...-++.++ +..++.++..++.++-...+.... -.-+++.+..++.
T Consensus 1034 ~alittlgpeL~~N~~~d~t~-~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTS-TLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLS 1108 (2067)
T ss_pred HHHHHhcccccCCCCcccchh-HHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhc
Confidence 12 111211 111 11112222333344555 788888999988888543222110 0124566666665
Q ss_pred cCCcchHHHHHHHHHHhcc
Q 043676 310 NAEFDTKKEAAWAISNATS 328 (446)
Q Consensus 310 ~~~~~v~~~a~~aL~~l~~ 328 (446)
+...-.+.....++..+..
T Consensus 1109 s~~~i~r~~~~~clrql~~ 1127 (2067)
T KOG1822|consen 1109 SSYLILRRASFSCLRQLVQ 1127 (2067)
T ss_pred chhhhhhhhHHhhhhHHhH
Confidence 5544444444555554443
No 323
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=80.56 E-value=72 Score=32.65 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=73.1
Q ss_pred ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcc
Q 043676 300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNM 379 (446)
Q Consensus 300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 379 (446)
+...+...+.++++..-...+.++.++..-......+ ...-.+.-..-....-..+.....++|.++....+..
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~--- 515 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSH--- 515 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH---
Confidence 3455566666677777777777777775421100000 0111111111122222345666777777777765554
Q ss_pred cCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043676 380 GTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCG 427 (446)
Q Consensus 380 ~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 427 (446)
....+.+.+....+..+.-++++++++.|..++...|+.
T Consensus 516 ---------L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~ 554 (727)
T PF12726_consen 516 ---------LKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDV 554 (727)
T ss_pred ---------HHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcC
Confidence 578888899999999999999999999999999999963
No 324
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=80.55 E-value=28 Score=28.00 Aligned_cols=72 Identities=7% Similarity=-0.010 Sum_probs=53.7
Q ss_pred CcHHHHHHhcCCCCccchhHHHHHHHHhhcC-CchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC
Q 043676 214 GVCPRLVELLGHPSPSVLTPALRTVGNIVTG-DDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG 287 (446)
Q Consensus 214 ~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~ 287 (446)
-.++.+++-+...+...+-.|...+..+... ..+..-.++ ..++..+-..|.+. ++++...++.+|..++..
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTR-DPEVFCATLKALQQLVTS 110 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 5677777888888888888888888887765 333332222 35777888888888 999999999999999543
No 325
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=80.23 E-value=46 Score=31.80 Aligned_cols=107 Identities=11% Similarity=0.119 Sum_probs=68.2
Q ss_pred cCChHHHHHHHhcCCcchHHHHHHHHHHhc-cCCCHHHHHHHHHcCChHHHHhccc-CCCHHHHHHHHHHHHHHHHhhhh
Q 043676 298 AGLIRPIVNLLQNAEFDTKKEAAWAISNAT-SGGTQEQIKHLVREGCVKPLCDLLL-CSDPEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 298 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~-~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~ 375 (446)
.++++.+++.+.. +.+..-.+..+. .- ..........+.+.++++.|+++|+ +.+++++..|...|+.++..+.+
T Consensus 20 ~~~v~~llkHI~~--~~ImDlLLklIs-~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n 96 (475)
T PF04499_consen 20 PNFVDNLLKHIDT--PAIMDLLLKLIS-TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRN 96 (475)
T ss_pred ccHHHHHHHhcCC--cHHHHHHHHHHc-cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 4566666665532 333222222222 10 0123345667778899999999996 45678999999999999988765
Q ss_pred hhcccCCCCccchHHHHHHHhChHHHHHHhhc
Q 043676 376 ERNMGTTIGDVNQYAQFVEEAGGLEKIENLQS 407 (446)
Q Consensus 376 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~ 407 (446)
.........++++....+.....++.|...+-
T Consensus 97 ~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL 128 (475)
T PF04499_consen 97 APQNEQSSIGPNPLTRQLVSEETVEKLLDIML 128 (475)
T ss_pred cccccccCCCccHHHHHHhChHHHHHHHHHHh
Confidence 43211112356888999999999988655543
No 326
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=79.97 E-value=15 Score=35.00 Aligned_cols=116 Identities=19% Similarity=0.185 Sum_probs=71.6
Q ss_pred cCChHHHHHHhccCchHHHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhc-CCcchHHHHHHHHHHhccCC
Q 043676 255 HGAVPYLLDMLVHNHEEIIKKEISWIISNITA---GNREQIQAVIDAGLIRPIVNLLQN-AEFDTKKEAAWAISNATSGG 330 (446)
Q Consensus 255 ~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~ 330 (446)
.++++.+++.+..+ .+..--...++ +. .......-+.+.++++.|+.++.. .++.++..|+..|+.+...+
T Consensus 20 ~~~v~~llkHI~~~---~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is 94 (475)
T PF04499_consen 20 PNFVDNLLKHIDTP---AIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRIS 94 (475)
T ss_pred ccHHHHHHHhcCCc---HHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 45666666666544 33332222222 11 223334445578999999999974 36789999999888875432
Q ss_pred ------------CHHHHHHHHHcCChHHHHhcccC-CCHHHHHHHHHHHHHHHHhhhh
Q 043676 331 ------------TQEQIKHLVREGCVKPLCDLLLC-SDPEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 331 ------------~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~ 375 (446)
.......+.....+..|++.+-. ........++.++..+++....
T Consensus 95 ~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRknns 152 (475)
T PF04499_consen 95 RNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKNNS 152 (475)
T ss_pred hccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhccc
Confidence 13455666777778888776542 3355566777788887765533
No 327
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=79.22 E-value=22 Score=31.90 Aligned_cols=186 Identities=13% Similarity=0.098 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHH-hcCC---CCccchhH-HHHHHHHh----hcCCchhhHHHHhcCC
Q 043676 187 DVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVE-LLGH---PSPSVLTP-ALRTVGNI----VTGDDFQTQCIINHGA 257 (446)
Q Consensus 187 ~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~-ll~~---~~~~~~~~-a~~~l~~l----~~~~~~~~~~~~~~~~ 257 (446)
.++...+..+.......++.. .+...+++.++. .+.+ ..+..|.. .+.+++.+ -....+....+++ .+
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~--~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPE--EVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AV 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HH--HHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HH
Confidence 355666666666665555332 233366676665 3332 33444432 33444443 3333334444443 36
Q ss_pred hHHHHHHhccCc--hHHHHHHHHHHHHHHhcCCHHHHHHHHH---cCChHHHHHHHhcCCcchHHHHHHHHHHhccCC--
Q 043676 258 VPYLLDMLVHNH--EEIIKKEISWIISNITAGNREQIQAVID---AGLIRPIVNLLQNAEFDTKKEAAWAISNATSGG-- 330 (446)
Q Consensus 258 ~~~l~~~l~~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~---~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-- 330 (446)
+...+.++..+. -|+.|..-...|..+..........+-. ..++..++..+++.+.++...++.++..+....
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 677777775531 4788887777777776532221111100 124566777778889999999999999886642
Q ss_pred -CHHHHHHHHHcCChHHHHhcc---cCC-CHHHHHHHHHHHHHHHHhhhh
Q 043676 331 -TQEQIKHLVREGCVKPLCDLL---LCS-DPEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 331 -~~~~~~~l~~~~~i~~L~~ll---~~~-~~~~~~~~~~~l~~l~~~~~~ 375 (446)
+++....+.+.-.++.+.+++ -++ ...--..-..+|.+++...+.
T Consensus 199 ~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~ 248 (319)
T PF08767_consen 199 TNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVES 248 (319)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHc
Confidence 345555555554444444443 233 222333344677777766444
No 328
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=78.88 E-value=22 Score=33.40 Aligned_cols=152 Identities=13% Similarity=0.081 Sum_probs=80.9
Q ss_pred HHhhcCCchhhHHHHhcCChHHHHHHhccCc---hHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcch
Q 043676 239 GNIVTGDDFQTQCIINHGAVPYLLDMLVHNH---EEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDT 315 (446)
Q Consensus 239 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 315 (446)
+..|.+.|.... .+-..|..+|.... ++.++...+.+|.-|--.+ .+.-..++..++.++..++...
T Consensus 4 aqv~~~yp~~~a-----~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~-----~i~~~~LL~lff~l~~~~dk~l 73 (616)
T KOG2229|consen 4 AQVCPCYPEVLA-----NFPSELKDLLRTNHTVLPPELREKIVKALILLRNKN-----LIVAEDLLELFFPLLRCGDKNL 73 (616)
T ss_pred hhcccccHHHHH-----hhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccC-----cCCHHHHHHHHHHHHhcCchhH
Confidence 344444444332 34556777776542 6788888888887773221 1112246778888888888887
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHH
Q 043676 316 KKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEE 395 (446)
Q Consensus 316 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 395 (446)
|.-+..-+.....+.+......=.....-..+..+|+..++.--..++..+..+.+..-+ .+
T Consensus 74 Rkllythiv~~Ikn~n~~~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~iW------------------~d 135 (616)
T KOG2229|consen 74 RKLLYTHIVTTIKNINKKHKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNIW------------------ND 135 (616)
T ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhccc------------------cc
Confidence 766655544433321111111101112234567788888876444444444444433222 23
Q ss_pred hChHHHHHHhhcCCCHHHHHHHH
Q 043676 396 AGGLEKIENLQSHDNNEIHEKSV 418 (446)
Q Consensus 396 ~~~~~~l~~l~~~~~~~v~~~a~ 418 (446)
+..+..+..-.-|.++.|.-.+.
T Consensus 136 ~~tV~i~~~acf~~~~ki~vs~l 158 (616)
T KOG2229|consen 136 SKTVNIITTACFSKVPKILVSGL 158 (616)
T ss_pred chhHHHHHHHHhccCcHHHHhhh
Confidence 44444444446677777654443
No 329
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=78.52 E-value=42 Score=28.74 Aligned_cols=130 Identities=15% Similarity=0.204 Sum_probs=67.0
Q ss_pred HhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCc-hHHHHHHHHHHHHHHhcCCHH
Q 043676 212 EAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNH-EEIIKKEISWIISNITAGNRE 290 (446)
Q Consensus 212 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~v~~~a~~~l~~l~~~~~~ 290 (446)
+...++.++++++.++..+- ..++-.....-...-..+-.|-++.+..++.++. +.-+|..|+.++..++...+.
T Consensus 71 e~~A~~~li~l~~~~~~~~~----~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~ 146 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLE----DLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPI 146 (249)
T ss_pred hhhhHHHHHHHHcCCcchHH----HHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 44677888898876554211 1111111101011111122345667777776652 567899999999999887666
Q ss_pred HHHHHHHcCChHHHHHH-HhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHH
Q 043676 291 QIQAVIDAGLIRPIVNL-LQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPL 347 (446)
Q Consensus 291 ~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L 347 (446)
.+..+++ .+..++.. +...+..+-..-+..++.+-...--..++.....|.|+..
T Consensus 147 ~Re~vi~--~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~~ 202 (249)
T PF06685_consen 147 SREEVIQ--YFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDPS 202 (249)
T ss_pred CHHHHHH--HHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCcc
Confidence 6666665 45555544 3333333333333333333222122334455566666553
No 330
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=77.47 E-value=82 Score=31.58 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHH
Q 043676 13 SDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPI 92 (446)
Q Consensus 13 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 92 (446)
..=+.++..++..+..+++.. ++.- ..++..++.-|.+++ ..+...|...|.++...+|.++..+ +..
T Consensus 315 D~L~~vk~raL~ti~~lL~~k-PEqE-----~~LL~~lVNKlGDpq-nKiaskAsylL~~L~~~HPnMK~Vv-----i~E 382 (988)
T KOG2038|consen 315 DPLEEVKKRALKTIYDLLTNK-PEQE-----NNLLVLLVNKLGDPQ-NKIASKASYLLEGLLAKHPNMKIVV-----IDE 382 (988)
T ss_pred ccHHHHHHHHHHHHHHHHhCC-cHHH-----HHHHHHHHHhcCCcc-hhhhhhHHHHHHHHHhhCCcceeeh-----HHH
Confidence 344788999999999998864 3222 246778888899998 6999999999999998788777655 344
Q ss_pred HHHhhCCCC--HHHHHHHHHHHHHhhC
Q 043676 93 FVKLLSSPS--DDVREQAVWALGNVAG 117 (446)
Q Consensus 93 L~~~L~~~~--~~v~~~a~~~l~~l~~ 117 (446)
+.+++-.++ .....+|+.+|..+..
T Consensus 383 Ier~~FRpn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 383 IERLAFRPNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred HHHHHcccCccccceeehhhhhhhhHh
Confidence 555554443 4455567777766663
No 331
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=77.01 E-value=22 Score=32.23 Aligned_cols=112 Identities=14% Similarity=0.142 Sum_probs=69.6
Q ss_pred hhhHHHHHHhhcCC-------CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC----------CCccchhH
Q 043676 171 RPALPALAQLVHSN-------DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH----------PSPSVLTP 233 (446)
Q Consensus 171 ~~~~~~l~~ll~~~-------~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~----------~~~~~~~~ 233 (446)
..++|.++.++... +.......+..+..|..+..-.....+. .+++.++.++-. +.+.+|..
T Consensus 209 ~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh-~Lip~vltclv~~~l~~~~~~~~h~~LRd~ 287 (343)
T cd08050 209 QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLH-QLIPSVLTCLVAKQLCSRPPDDNHWALRDY 287 (343)
T ss_pred hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHH-HHHHHHHHHhhhHhhcCCCCCchHHHHHHH
Confidence 44567777666532 5677888888888888876655543333 578888877632 34578999
Q ss_pred HHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCch-HHHHHHHHHHHHHH
Q 043676 234 ALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHE-EIIKKEISWIISNI 284 (446)
Q Consensus 234 a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~v~~~a~~~l~~l 284 (446)
|+.++..++......-. -+...+...+.+.+.++.. ......|+..|..+
T Consensus 288 AA~ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 288 AARLLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99999999854322211 1233455567766665422 23355566666655
No 332
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=76.47 E-value=61 Score=34.52 Aligned_cols=237 Identities=15% Similarity=0.137 Sum_probs=125.8
Q ss_pred hhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHH-HHHHHhCcHHHHHH---------hcCC-CCccchhHHHHHH
Q 043676 170 VRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKI-QAVIEAGVCPRLVE---------LLGH-PSPSVLTPALRTV 238 (446)
Q Consensus 170 ~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~l~~---------ll~~-~~~~~~~~a~~~l 238 (446)
..+++..|+.-+-++.+++|.-+.-+++.+........ ....+ ..+..++. ...+ --..+++.+++++
T Consensus 75 f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~le-d~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L 153 (1549)
T KOG0392|consen 75 FLSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLE-DLLIRLLCVLALDRFGDFISDNVVAPVREACAQAL 153 (1549)
T ss_pred HHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHH-HHHHHHHHHHHHHHhcccccccchhhhHHHHHHHH
Confidence 35667777777777888888888888877764322111 11121 11111111 1111 1236888899999
Q ss_pred HHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHH
Q 043676 239 GNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKE 318 (446)
Q Consensus 239 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~ 318 (446)
+.+..+.....- ...++.+..++..+ ..+++...+..+....+...+....+. ..+++..+.-+.+.+.+++..
T Consensus 154 ~~~l~~~~~s~~----~~~~~il~q~~~q~-~w~ir~Ggll~iky~~air~d~l~~~~-~~vl~~~i~~L~ds~ddv~~~ 227 (1549)
T KOG0392|consen 154 GAYLKHMDESLI----KETLDILLQMLRQP-NWEIRHGGLLGIKYNVAIRQDLLFQLL-NLVLDFVIEGLEDSDDDVRSV 227 (1549)
T ss_pred HHHHHhhhhHhh----HHHHHHHHHHHcCc-chhheechHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhcchHHHHH
Confidence 888765432111 12466777777777 677776655555444331111111111 135677778888889999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCC------HHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHH
Q 043676 319 AAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSD------PEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQF 392 (446)
Q Consensus 319 a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 392 (446)
|+..+.-+....-....+.+.. ++..+...+..-+ ..++. .+..++...+... +...
T Consensus 228 aa~~l~~~~s~~v~l~~~~i~~--lv~~l~~~l~~lddl~~s~~si~~----ll~~l~~~~evl~-----------l~~~ 290 (1549)
T KOG0392|consen 228 AAQFLVPAPSIQVKLMVQKIAK--LVHTLWSFLLELDDLSSSTASIMH----LLDELCIENEVLD-----------LFEQ 290 (1549)
T ss_pred HHHHhhhhhHHHHhhhHhHHHH--HHHHHHHHHHHhhhcchhhHHHHH----HHHHHhhhHHHHH-----------HHHH
Confidence 9998887765321111111111 3333333332211 11221 1112211111110 1111
Q ss_pred H-HHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 043676 393 V-EEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNE 430 (446)
Q Consensus 393 l-~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 430 (446)
. .+.|..+.+.-...+.-..++..+...+..+.+.++.
T Consensus 291 ~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~~q 329 (1549)
T KOG0392|consen 291 QNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEADDQ 329 (1549)
T ss_pred hhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1 2245666677777788788888888888888877643
No 333
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=75.93 E-value=7.2 Score=26.94 Aligned_cols=67 Identities=10% Similarity=0.224 Sum_probs=44.4
Q ss_pred HHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhh----cCCCHhHHHHHHHHHH
Q 043676 127 LSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLV----HSNDEDVLTYACWSLS 197 (446)
Q Consensus 127 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll----~~~~~~v~~~~~~~l~ 197 (446)
.+...+.++..++....+.++++..+.++.++...... ....+-+.+...+ .++++.+...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~----~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGE----NIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHH----HHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 34456788888887778899999999999999876521 2223334444433 3556777777766553
No 334
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=75.68 E-value=21 Score=25.90 Aligned_cols=80 Identities=19% Similarity=0.114 Sum_probs=54.6
Q ss_pred CChHHHHHHhcc---CchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--CcchHHHHHHHHHHhccCC
Q 043676 256 GAVPYLLDMLVH---NHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA--EFDTKKEAAWAISNATSGG 330 (446)
Q Consensus 256 ~~~~~l~~~l~~---~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~ 330 (446)
|++..+.+.+.+ ..+...|..+...+..+..-...... .+.|.++..|++. .++++..|+.+...+...-
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 445556666655 33677888999999998763333322 3566777777753 5689999999999988876
Q ss_pred CHHHHHHHHH
Q 043676 331 TQEQIKHLVR 340 (446)
Q Consensus 331 ~~~~~~~l~~ 340 (446)
+++....++.
T Consensus 86 ~~~~l~~ll~ 95 (107)
T PF08064_consen 86 DEEDLGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 6666665443
No 335
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=75.29 E-value=52 Score=28.18 Aligned_cols=130 Identities=17% Similarity=0.233 Sum_probs=71.8
Q ss_pred CCHHHHHHhhcC-----------CCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHH--------HH
Q 043676 45 GVVPRFVEFLMR-----------EDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDD--------VR 105 (446)
Q Consensus 45 ~~~~~L~~ll~~-----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~--------v~ 105 (446)
.++|.|+.+|.. ++ ......|+..|+.+-. ....+.++++++.++.. +-
T Consensus 31 ~i~P~Ll~~Le~a~~~~~e~~~~~~-~~~~~~a~~LLaq~re-----------~~A~~~li~l~~~~~~~~~~l~GD~~t 98 (249)
T PF06685_consen 31 EITPELLKILEDAIERANELLDDEE-YNLHFYALYLLAQFRE-----------ERALPPLIRLFSQDDDFLEDLFGDFIT 98 (249)
T ss_pred HhhHHHHHHHHHHHHhHHHhccCcc-hHHHHHHHHHHHHHhh-----------hhhHHHHHHHHcCCcchHHHHHcchhH
Confidence 356666666653 22 2334555555555533 35689999999765532 22
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcccc-chhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC
Q 043676 106 EQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA-KLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSN 184 (446)
Q Consensus 106 ~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 184 (446)
+....++..++ .|-+..+..++.+.. +.-++..++.+|..++...+..+-....-+-..+-..+..+
T Consensus 99 E~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~ 166 (249)
T PF06685_consen 99 EDLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERN 166 (249)
T ss_pred hHHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccC
Confidence 22223333333 344566777773322 56688899999999999886555544444444444445444
Q ss_pred CHhHHHHHHHHHHH
Q 043676 185 DEDVLTYACWSLSY 198 (446)
Q Consensus 185 ~~~v~~~~~~~l~~ 198 (446)
+..+....+..+..
T Consensus 167 ~~~~~~~Lv~~~~d 180 (249)
T PF06685_consen 167 PSFLWGSLVADICD 180 (249)
T ss_pred chHHHHHHHHHHHh
Confidence 44433443333333
No 336
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=75.28 E-value=36 Score=34.15 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=52.1
Q ss_pred CccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC
Q 043676 227 SPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG 287 (446)
Q Consensus 227 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~ 287 (446)
.+..|..++..|+.+....+.....+.+..+++.|+..|..+.+..+...|+.+|..+.-.
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 4567889999999999999999988999999999999998775777778888888887643
No 337
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=75.14 E-value=88 Score=30.77 Aligned_cols=167 Identities=16% Similarity=0.170 Sum_probs=84.0
Q ss_pred hhcCCCChHHHHHHHHHHHHHcCCChhhHHHHH---hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHc
Q 043676 53 FLMREDYPQLQYEAAWVLINIASGTSENTNVVI---DHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQ 129 (446)
Q Consensus 53 ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~---~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 129 (446)
.+..-. .+.+.-|+.+|.-+..+.+.....+- .+..+..++..+. .++..+-.++++|.|+..+ +..++.+...
T Consensus 552 ~l~~wp-~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~ 628 (745)
T KOG0301|consen 552 ILLQWP-VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR 628 (745)
T ss_pred HHhcCC-HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH
Confidence 333344 57788888888777764333222222 2234455555554 5577788899999999966 5455554432
Q ss_pred CChHHHHHHhc---cccchhHHHHHHHHHHHhhcC--CCCCChhhhhhhHHHHHHhhcC-CCHhHHHHHHHHHHHhccCC
Q 043676 130 GALIPLLAELN---EHAKLSMLRNATRTLSNFCRG--KPEPPFDQVRPALPALAQLVHS-NDEDVLTYACWSLSYLADGT 203 (446)
Q Consensus 130 ~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~~~~~l~~l~~~~ 203 (446)
...++..+. ...+..++........|++-. ....+.....-+...+..++.. .|-+.....+.++++++..+
T Consensus 629 --~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~ 706 (745)
T KOG0301|consen 629 --LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD 706 (745)
T ss_pred --HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc
Confidence 223332221 122334444333333333221 1122221222222222233332 24456677888889988876
Q ss_pred cHHHHHHHHhCcHHHHHHhcCC
Q 043676 204 NDKIQAVIEAGVCPRLVELLGH 225 (446)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~ll~~ 225 (446)
....+ +.+.--+..++..++.
T Consensus 707 ~~~~~-~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 707 ASVIQ-LAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHHH-HHHhcCHHHHHHHHHH
Confidence 64444 4443445555555544
No 338
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=74.34 E-value=21 Score=25.91 Aligned_cols=80 Identities=16% Similarity=0.085 Sum_probs=53.9
Q ss_pred CChHHHHHHhccCc---hHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--CcchHHHHHHHHHHhccCC
Q 043676 256 GAVPYLLDMLVHNH---EEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA--EFDTKKEAAWAISNATSGG 330 (446)
Q Consensus 256 ~~~~~l~~~l~~~~---~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~ 330 (446)
|++..+.+.+.+.. +..-|+.+..++..+..-....+. .+.|.++..|++. .++++..|+.+...+...-
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~-----~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS-----SALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 45666666676552 345688888888888763222221 3567777777763 6789999999999988776
Q ss_pred CHHHHHHHHH
Q 043676 331 TQEQIKHLVR 340 (446)
Q Consensus 331 ~~~~~~~l~~ 340 (446)
+++....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T smart00802 86 KEEELGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 6666665544
No 339
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=74.06 E-value=10 Score=34.06 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=60.8
Q ss_pred ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhc-CCCHHHHHHHHHHH
Q 043676 343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQS-HDNNEIHEKSVKIF 421 (446)
Q Consensus 343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~~l 421 (446)
++..+.+-+.+.++.|...++..+..+...+++. |+..+....+...|..+.. +.++.|.++...++
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~------------~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv 113 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKR------------FRLEVSSRDFTTELRALIESKAHPKVCEKMRDLV 113 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchH------------HHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 5777888889999999999999999999888775 6788888888888999987 77888888888777
Q ss_pred HHhcCC
Q 043676 422 KTYWCG 427 (446)
Q Consensus 422 ~~~~~~ 427 (446)
..+-+.
T Consensus 114 ~eWsee 119 (462)
T KOG2199|consen 114 KEWSEE 119 (462)
T ss_pred HHHHHH
Confidence 777653
No 340
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=73.86 E-value=68 Score=28.84 Aligned_cols=180 Identities=12% Similarity=0.153 Sum_probs=101.2
Q ss_pred chhHHHHHHHHhhcCCchhhHHHHhcCChHHHHH-Hhcc---C----chHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCh
Q 043676 230 VLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLD-MLVH---N----HEEIIKKEISWIISNITAGNREQIQAVIDAGLI 301 (446)
Q Consensus 230 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~-~l~~---~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i 301 (446)
+++..+..+.......++.. .+...+++++++ +|.+ . .++++-.-....+..+-....+....+.+ .++
T Consensus 43 iKkeIL~Li~t~i~~~~~~~--~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~vf 119 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPE--EVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HH--HHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HHH
Confidence 45566666666665444222 233456677666 3321 1 13444444444444443322333444444 466
Q ss_pred HHHHHHHhcC---CcchHHHHHHHHHHhccCC-------CHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHH
Q 043676 302 RPIVNLLQNA---EFDTKKEAAWAISNATSGG-------TQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILK 371 (446)
Q Consensus 302 ~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~-------~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~ 371 (446)
...+.++..+ -|+.+..-...|..+...+ +++..+. ++..+.--+++.+.++...++.++..++.
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~-----~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKL-----VIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 7777777653 3678877777777776532 1222222 35556666789999999999999999998
Q ss_pred hhhhhhcccCCCCccchHHHHHHHhChHHHHHHh----hcCCCHHHHHHHHHHHHHhcC
Q 043676 372 VGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENL----QSHDNNEIHEKSVKIFKTYWC 426 (446)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l----~~~~~~~v~~~a~~~l~~~~~ 426 (446)
...+.. ..+...+-+.-.++.+..+ ....+....+.-..++.+++.
T Consensus 195 ~~~~~~---------~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 195 NVSKTN---------PEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR 244 (319)
T ss_dssp HHHH-S---------HHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred HHHhcC---------HHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 776611 1134555555555555443 455566666666678888774
No 341
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=73.22 E-value=20 Score=27.74 Aligned_cols=124 Identities=13% Similarity=0.112 Sum_probs=81.9
Q ss_pred CChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCC--ChHHHHHHHHcCChHHHHHHhccccchhHHHHHH
Q 043676 76 GTSENTNVVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAGD--SPRCRDLVLSQGALIPLLAELNEHAKLSMLRNAT 152 (446)
Q Consensus 76 ~~~~~~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~--~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~ 152 (446)
++++.-+.+.+...+..+.++++. ....++.+.+..+.-+... ++..-..+...+.+..++..--+-.++++...-.
T Consensus 14 ~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYI 93 (149)
T PF09758_consen 14 NDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYI 93 (149)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHH
Confidence 356677888899999999999987 6677888888877777632 2222234556666777766544556788988888
Q ss_pred HHHHHhhcCCCCCChh--hh--hhhHH---HHHHhhcCCCHhHHHHHHHHHHHh
Q 043676 153 RTLSNFCRGKPEPPFD--QV--RPALP---ALAQLVHSNDEDVLTYACWSLSYL 199 (446)
Q Consensus 153 ~~L~~l~~~~~~~~~~--~~--~~~~~---~l~~ll~~~~~~v~~~~~~~l~~l 199 (446)
..|..++..-...... .. .+-.| .-+++..++|..+|..+-..+-++
T Consensus 94 sfLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 94 SFLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 8888888654222111 11 22334 445666788888888776666554
No 342
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.21 E-value=25 Score=31.93 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=82.2
Q ss_pred hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHH
Q 043676 132 LIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVI 211 (446)
Q Consensus 132 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~ 211 (446)
+..++..+ ++.+..++..++.-+..+....+.........+++.+..+..+.+..+|......+-.+............
T Consensus 60 lkeLl~ql-kHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQL-KHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhh-cCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 55677777 78899999999999988877755555555677888888888889999998888888775543222221122
Q ss_pred HhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCch
Q 043676 212 EAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDF 247 (446)
Q Consensus 212 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~ 247 (446)
-.=+++.+...+.+-.+.++..++..+.-+....++
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p 174 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPD 174 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcCh
Confidence 223345555666777888999999999888866643
No 343
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.40 E-value=48 Score=30.24 Aligned_cols=116 Identities=14% Similarity=0.122 Sum_probs=80.8
Q ss_pred ChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHH
Q 043676 257 AVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIK 336 (446)
Q Consensus 257 ~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 336 (446)
-+..++..+++. +..+|..|...+..+....+.....- ...+++.+..+..+.+..+|......+-.+.....++...
T Consensus 59 tlkeLl~qlkHh-NakvRkdal~glkd~l~s~p~~l~~~-~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKHH-NAKVRKDALNGLKDLLKSHPAELQSH-LYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cHHHHHhhhcCc-hHhhhHHHHHHHHHHHHhChHHHHHH-HHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhc
Confidence 356788889998 99999999999988876544433311 2347888888888889999999999988876554444422
Q ss_pred HHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676 337 HLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 337 ~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 375 (446)
.++. -..+.+...+.+-.++++..++..+..++...+.
T Consensus 137 p~~~-l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p 174 (393)
T KOG2149|consen 137 PMVS-LLMPYISSAMTHITPEIQEDSLKFLSLLLERYPD 174 (393)
T ss_pred chHH-HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcCh
Confidence 2211 1344555556677888888888888887776543
No 344
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.18 E-value=1.3e+02 Score=32.88 Aligned_cols=200 Identities=10% Similarity=0.132 Sum_probs=101.9
Q ss_pred HHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHH
Q 043676 216 CPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAV 295 (446)
Q Consensus 216 ~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 295 (446)
+..+++-+...|+..+..|+..+..+....+......+-......+.+++.+. +..||...-.++..+...-.......
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~-~~~VR~~t~~v~s~l~t~lkk~lsp~ 121 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDE-DRTVRLLTHDVFSKLLTKLKKKLSPF 121 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 44566667778889999999999999864433222111111222344555666 89999999999998876433333333
Q ss_pred HHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhc-------------------ccCCCH
Q 043676 296 IDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDL-------------------LLCSDP 356 (446)
Q Consensus 296 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l-------------------l~~~~~ 356 (446)
.+ .+++...-..-+.+..+-..|...+............-.+.+........+. ++...+
T Consensus 122 LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~ 200 (1312)
T KOG0803|consen 122 LK-SLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQ 200 (1312)
T ss_pred HH-hhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhH
Confidence 33 2333333222333455666666666555442111111111111112222222 112234
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 043676 357 EIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTY 424 (446)
Q Consensus 357 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~ 424 (446)
.+...++.++..++......... ......+.-.-.-+.++.+..++.+.+......++-.+
T Consensus 201 Rvi~ssLl~l~~l~~~~~~~~el-------~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l 261 (1312)
T KOG0803|consen 201 RVISSSLLLLLKLFKITGDEEEL-------HSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSL 261 (1312)
T ss_pred HHHHHHHHHHHHHHHHhCchHhh-------hhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 56667777777777543333211 00001111111234578888888877766555554444
No 345
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=70.46 E-value=71 Score=27.67 Aligned_cols=176 Identities=18% Similarity=0.179 Sum_probs=99.4
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-------hHHHHHHHHcCChHHHHHHhccccc----hhHHHHHHHHHH
Q 043676 88 GAVPIFVKLLSSPSDDVREQAVWALGNVAGDS-------PRCRDLVLSQGALIPLLAELNEHAK----LSMLRNATRTLS 156 (446)
Q Consensus 88 ~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~-------~~~~~~~~~~~~i~~l~~~l~~~~~----~~~~~~a~~~L~ 156 (446)
|+.+.+.+.+.++ ...+.++.++..++... ++.|-.+.-...+|.++..+ +.++ ......++..|.
T Consensus 64 Glq~Ll~KGL~Ss--~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~-d~~~~i~~~~~~~~~A~~La 140 (262)
T PF14225_consen 64 GLQPLLLKGLRSS--STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAF-DDPNPIQPDQECIEIAEALA 140 (262)
T ss_pred hHHHHHhCccCCC--CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHh-cccccccccHHHHHHHHHHH
Confidence 4445555666553 34455666666666321 11222222333466666666 3333 244567778888
Q ss_pred HhhcCCCCCChhhhhhhHHHHHHhhc---CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhH
Q 043676 157 NFCRGKPEPPFDQVRPALPALAQLVH---SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTP 233 (446)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~l~~ll~---~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 233 (446)
.+|...... +.-..+..+.+ .+..+....++..++.-.. ++ .+...+..++.++.++.+.++..
T Consensus 141 ~~a~~~~~~------~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~-----~~~~~l~~Ll~lL~n~~~w~~~~ 207 (262)
T PF14225_consen 141 QVAEAQGLP------NLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PD-----HEFQILTFLLGLLENGPPWLRRK 207 (262)
T ss_pred HHHHhCCCc------cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--ch-----hHHHHHHHHHHHHhCCcHHHHHH
Confidence 888654222 22222222322 2235555556555554221 11 12255677889998888899999
Q ss_pred HHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHh
Q 043676 234 ALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNIT 285 (446)
Q Consensus 234 a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~ 285 (446)
++.+|..+....+-... ...+++.++.++++++ . -.+|..++-+..
T Consensus 208 ~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~-~---~~eAL~VLd~~v 253 (262)
T PF14225_consen 208 TLQILKVLLPHVDMRSP--HGADLISPLLRLLQTD-L---WMEALEVLDEIV 253 (262)
T ss_pred HHHHHHHHhccccCCCC--cchHHHHHHHHHhCCc-c---HHHHHHHHHHHH
Confidence 99999999875543322 4556888899999776 3 345555555443
No 346
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=70.43 E-value=5.7 Score=20.23 Aligned_cols=12 Identities=8% Similarity=0.399 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHH
Q 043676 273 IKKEISWIISNI 284 (446)
Q Consensus 273 v~~~a~~~l~~l 284 (446)
||..|+++|+++
T Consensus 1 VR~~Aa~aLg~i 12 (27)
T PF03130_consen 1 VRRAAARALGQI 12 (27)
T ss_dssp HHHHHHHHHGGG
T ss_pred CHHHHHHHHHHc
Confidence 578899999988
No 347
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=69.95 E-value=54 Score=26.05 Aligned_cols=106 Identities=14% Similarity=0.133 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHhcCCC-----CC---cHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHh-
Q 043676 16 NSLQLEATTLSRKLLSFDR-----NP---PIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVID- 86 (446)
Q Consensus 16 ~~~~~~a~~~l~~l~~~~~-----~~---~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~- 86 (446)
...+..+++.+..+....+ .+ ....+++..+.+.+.+.+.+++ +.+-..+++++..+.. ..+..+..
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~---~~~~~Lk~e 111 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLS---RFRSHLKLE 111 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 4567778888887665431 22 3455667788899999988888 8999999999999986 33333321
Q ss_pred cC-ChHHHHH-hhCCCC--HHHHHHHHHHHHHhhCCChHHHHH
Q 043676 87 HG-AVPIFVK-LLSSPS--DDVREQAVWALGNVAGDSPRCRDL 125 (446)
Q Consensus 87 ~~-~i~~L~~-~L~~~~--~~v~~~a~~~l~~l~~~~~~~~~~ 125 (446)
.+ .++.+.. ++.+++ ..-|..++.++..++.+..-..+.
T Consensus 112 le~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~l 154 (168)
T PF12783_consen 112 LEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDL 154 (168)
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHH
Confidence 11 2334443 566533 467888999999999655443333
No 348
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=69.72 E-value=80 Score=27.97 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=62.6
Q ss_pred cCChHHHHHHHhcC--CcchHHHHHHHHHHhccCCCH-HHHHHHHHcCChHHHHhcccCC---CHHHHHHHHHHHHHHHH
Q 043676 298 AGLIRPIVNLLQNA--EFDTKKEAAWAISNATSGGTQ-EQIKHLVREGCVKPLCDLLLCS---DPEIVTVCLIGLENILK 371 (446)
Q Consensus 298 ~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~-~~~~~l~~~~~i~~L~~ll~~~---~~~~~~~~~~~l~~l~~ 371 (446)
.|.+..++..+... +...+-.-+.++-.+..+.++ ....++.+.|.++.++..+-++ +..+.+...+.|+.+++
T Consensus 94 ~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK 173 (303)
T PF12463_consen 94 KGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIK 173 (303)
T ss_pred ccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHC
Confidence 57788888877654 567788888889889888776 4566778999999999877544 34688999999999998
Q ss_pred hhhhhh
Q 043676 372 VGEAER 377 (446)
Q Consensus 372 ~~~~~~ 377 (446)
.....-
T Consensus 174 ~n~~~f 179 (303)
T PF12463_consen 174 FNRDAF 179 (303)
T ss_pred CCHHHH
Confidence 776653
No 349
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=69.55 E-value=26 Score=23.41 Aligned_cols=52 Identities=27% Similarity=0.399 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043676 360 TVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYW 425 (446)
Q Consensus 360 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 425 (446)
..++++|..+-..... .+.+.+.+.-..+..|-.|++++|...|..++..+-
T Consensus 19 ~~~l~~L~~L~~~~~t--------------~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~WK 70 (75)
T smart00509 19 SRCLDILKKLKKLPIT--------------VDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSWK 70 (75)
T ss_pred HHHHHHHHHHhcCCCC--------------HHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 3466666665543322 577887877777899999999999999999988763
No 350
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=69.43 E-value=91 Score=28.49 Aligned_cols=131 Identities=16% Similarity=0.191 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHh
Q 043676 101 SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL 180 (446)
Q Consensus 101 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~l 180 (446)
...-++.|...+.+....-|...+. ++.+-+.+. .+.+..++++|+.-|-.+|.++ ......+.|+++
T Consensus 37 ~~k~k~lasq~ip~~fk~fp~la~~-----a~da~~d~~-ed~d~~ir~qaik~lp~fc~~d------~~~rv~d~l~qL 104 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFKHFPSLADE-----AIDAQLDLC-EDDDVGIRRQAIKGLPLFCKGD------ALSRVNDVLVQL 104 (460)
T ss_pred chHHHHHHHHHHHHHHhhCchhhhH-----HHHhhhccc-cccchhhHHHHHhccchhccCc------hhhhhHHHHHHH
Confidence 4555667777777777665654443 345666666 6778899999999999888873 222334444444
Q ss_pred hc------------CCCHhHHHHHHHHHHH-hccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676 181 VH------------SNDEDVLTYACWSLSY-LADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT 243 (446)
Q Consensus 181 l~------------~~~~~v~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~ 243 (446)
|. ..|..+|+.++..|.. +..-.++....-++..+++.+...|.+-..+--...+..|+++..
T Consensus 105 Lnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~ 180 (460)
T KOG2213|consen 105 LNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKS 180 (460)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence 43 2367777777776654 222233333333444555555555655444433344555665543
No 351
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=69.34 E-value=28 Score=26.04 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=58.8
Q ss_pred HHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcc---cCCCHHHHHHHHHHHHHHHHhhhhhhcccCCC
Q 043676 307 LLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLL---LCSDPEIVTVCLIGLENILKVGEAERNMGTTI 383 (446)
Q Consensus 307 ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll---~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 383 (446)
...+.+...-...+.-|+..+... ..... ++..|..-| +..++.+..+++..|..++..+...
T Consensus 11 AT~~d~~gp~~~~l~eIa~~t~~~--~~~~~-----I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~------- 76 (125)
T PF01417_consen 11 ATSNDPWGPPGKLLAEIAQLTYNS--KDCQE-----IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSER------- 76 (125)
T ss_dssp HTSSSSSS--HHHHHHHHHHTTSC--HHHHH-----HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HH-------
T ss_pred HcCCCCCCcCHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHH-------
Confidence 334444455566666777776542 44444 345566665 6677889999999999999988775
Q ss_pred CccchHHHHHH-HhChHHHHHHhhc-CC-----CHHHHHHHHHHHHHhcC
Q 043676 384 GDVNQYAQFVE-EAGGLEKIENLQS-HD-----NNEIHEKSVKIFKTYWC 426 (446)
Q Consensus 384 ~~~~~~~~~l~-~~~~~~~l~~l~~-~~-----~~~v~~~a~~~l~~~~~ 426 (446)
+...+. ....+..+..+.. ++ ...|+++|..+++-+.+
T Consensus 77 -----~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d 121 (125)
T PF01417_consen 77 -----FVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLND 121 (125)
T ss_dssp -----HHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTS
T ss_pred -----HHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCC
Confidence 344443 2233333433322 11 13489999999886654
No 352
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=69.15 E-value=42 Score=31.70 Aligned_cols=80 Identities=20% Similarity=0.277 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHH
Q 043676 16 NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVK 95 (446)
Q Consensus 16 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 95 (446)
...|..|+++|..+++.-..+....+.+ +.|+..|+++. ..-|..|+.++...+...........-....+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 4567889999998887642333332222 26888899888 677777778888877632211111001123466777
Q ss_pred hhCCC
Q 043676 96 LLSSP 100 (446)
Q Consensus 96 ~L~~~ 100 (446)
.|..+
T Consensus 176 ~L~~~ 180 (441)
T PF12054_consen 176 ILENP 180 (441)
T ss_pred HHcCC
Confidence 77743
No 353
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=68.52 E-value=28 Score=26.72 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=35.4
Q ss_pred HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHH
Q 043676 186 EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV 238 (446)
Q Consensus 186 ~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l 238 (446)
.++...++.++......-+ ...+.+.++++.+..++ .++..+..|+.+|
T Consensus 100 ~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLL--QSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHT--TSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHc--CCHHHHHHHHHhC
Confidence 7888888889888877544 33466677889999988 4445577777765
No 354
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=68.48 E-value=1.3e+02 Score=29.77 Aligned_cols=161 Identities=9% Similarity=0.080 Sum_probs=81.5
Q ss_pred CCHhHHHHHHHHHHHhccCCcHHHHHHH---HhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhc--CCh
Q 043676 184 NDEDVLTYACWSLSYLADGTNDKIQAVI---EAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINH--GAV 258 (446)
Q Consensus 184 ~~~~v~~~~~~~l~~l~~~~~~~~~~~~---~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~--~~~ 258 (446)
-..+.+-.|+.+++-+..+......... ...++..++..+. .++..+..++++|.|+..+ +..++.+... .++
T Consensus 556 wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~~~i~ 633 (745)
T KOG0301|consen 556 WPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSRLESIL 633 (745)
T ss_pred CCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHHHHHHh
Confidence 3455666677777776655443332222 1235555555554 5566778899999999986 4444433321 122
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-----CCcchHHHHHHHHHHhccCCCHH
Q 043676 259 PYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN-----AEFDTKKEAAWAISNATSGGTQE 333 (446)
Q Consensus 259 ~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~~~~ 333 (446)
..+...-..+ +..++...+....|++.. ..+.--+.+..+.+...+.. .+.+.....+.||++++.. +.
T Consensus 634 ~~~~~~~s~~-~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~--~~ 707 (745)
T KOG0301|consen 634 DPVIEASSLS-NKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV--DA 707 (745)
T ss_pred hhhhhhhccc-chhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc--cH
Confidence 2222222222 445555544444444321 00000112444444444432 1334566778888888774 34
Q ss_pred HHHHHHHcCChHHHHhccc
Q 043676 334 QIKHLVREGCVKPLCDLLL 352 (446)
Q Consensus 334 ~~~~l~~~~~i~~L~~ll~ 352 (446)
...++...-.+..+..-++
T Consensus 708 ~~~~~A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 708 SVIQLAKNRSVDSIAKKLK 726 (745)
T ss_pred HHHHHHHhcCHHHHHHHHH
Confidence 4555555444555555543
No 355
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=68.12 E-value=46 Score=24.52 Aligned_cols=101 Identities=18% Similarity=0.120 Sum_probs=63.0
Q ss_pred ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcc
Q 043676 300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNM 379 (446)
Q Consensus 300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 379 (446)
+++.|+.-+.+.+++|...|...|...+.. +...+.++... |.+..+- ....-.+..++.....
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~--~~~le~~v~~~--p~l~~L~--------~~g~~Ll~~~lS~~~G---- 72 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACED--KEYLEYLVSLR--PSLDHLG--------DIGSPLLLRFLSTPSG---- 72 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--hhhHHHHHHcC--cHHHHHH--------HcCHHHHHHHHcchHH----
Confidence 578888999999999999999999999874 35555554422 2222221 1122333444443332
Q ss_pred cCCCCccchHHHHHHHhChHHH-HHHhhcCCCHHHHHHHHHHHHHhcC
Q 043676 380 GTTIGDVNQYAQFVEEAGGLEK-IENLQSHDNNEIHEKSVKIFKTYWC 426 (446)
Q Consensus 380 ~~~~~~~~~~~~~l~~~~~~~~-l~~l~~~~~~~v~~~a~~~l~~~~~ 426 (446)
.+.+.+.|.++. ++......|.+=.......+..-+.
T Consensus 73 ----------f~~L~~~~~v~~El~~W~~~~N~~YV~~vE~~l~~~~~ 110 (115)
T PF14663_consen 73 ----------FRYLNEIGYVEKELDKWFESFNKEYVKLVEEFLSEALT 110 (115)
T ss_pred ----------HHHhcchhHHHHHHHHHHHcccHHHHHHHHHHHHHHHh
Confidence 345666676666 6777888887766666666665544
No 356
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=67.76 E-value=94 Score=28.29 Aligned_cols=110 Identities=13% Similarity=0.135 Sum_probs=65.8
Q ss_pred ChHHHHHHhccc-----c-chhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc----------CCCHhHHHHHHH
Q 043676 131 ALIPLLAELNEH-----A-KLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH----------SNDEDVLTYACW 194 (446)
Q Consensus 131 ~i~~l~~~l~~~-----~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~----------~~~~~v~~~~~~ 194 (446)
.+|.++..+... . +.......+.++..|..+....-......++|.++.++- .+...+|..+..
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 356666665321 1 466677788888888888644444455678888887763 234789999999
Q ss_pred HHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccc--hhHHHHHHHHh
Q 043676 195 SLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSV--LTPALRTVGNI 241 (446)
Q Consensus 195 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~--~~~a~~~l~~l 241 (446)
++..++........ -+...+...+.+.+.++.... ..-|+..|..+
T Consensus 291 ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 291 LLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99999855332222 223345555665555543322 33344444444
No 357
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=67.12 E-value=66 Score=27.99 Aligned_cols=75 Identities=17% Similarity=0.206 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhcccC---CCCccchHHHHHHHhChHHHHHHhhcCCCH-HHHHHHHHHHHHhcCCCC
Q 043676 355 DPEIVTVCLIGLENILKVGEAERNMGT---TIGDVNQYAQFVEEAGGLEKIENLQSHDNN-EIHEKSVKIFKTYWCGRN 429 (446)
Q Consensus 355 ~~~~~~~~~~~l~~l~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~-~v~~~a~~~l~~~~~~~~ 429 (446)
+..+.+.++-.+.|++...+....... .-...+.+...|.++|..+.|..+..+.+. +......+|+.-+|.+.+
T Consensus 133 d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~ 211 (266)
T PF04821_consen 133 DNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQD 211 (266)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCCC
Confidence 456888899999999988443321110 013455677889999999999999888743 333355566666666554
No 358
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=67.08 E-value=7.3 Score=30.02 Aligned_cols=126 Identities=8% Similarity=0.059 Sum_probs=86.3
Q ss_pred CCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHHHh-cCCcchHHHHH
Q 043676 244 GDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA--GNREQIQAVIDAGLIRPIVNLLQ-NAEFDTKKEAA 320 (446)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~--~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~ 320 (446)
+++...+.+.+.+++..++++++......++.....+++-+.. .++...-++..++.+..++..-- -.+.++...=.
T Consensus 14 ~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYI 93 (149)
T PF09758_consen 14 NDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYI 93 (149)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHH
Confidence 4456777788999999999999885478888888888888765 45555556667777777776433 24677888878
Q ss_pred HHHHHhccCCCHHHHHHHHH--cCChHHHH---hcccCCCHHHHHHHHHHHHHH
Q 043676 321 WAISNATSGGTQEQIKHLVR--EGCVKPLC---DLLLCSDPEIVTVCLIGLENI 369 (446)
Q Consensus 321 ~aL~~l~~~~~~~~~~~l~~--~~~i~~L~---~ll~~~~~~~~~~~~~~l~~l 369 (446)
..|..++..-+++....+.. .+-.|.+. .+..++|+-++.++-.+.-++
T Consensus 94 sfLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 94 SFLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 88888877655555555443 23455554 445677777777665555443
No 359
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=67.02 E-value=26 Score=21.34 Aligned_cols=36 Identities=19% Similarity=0.406 Sum_probs=30.6
Q ss_pred HHHHHHhChHHHHHHhhcC-CCHHHHHHHHHHHHHhc
Q 043676 390 AQFVEEAGGLEKIENLQSH-DNNEIHEKSVKIFKTYW 425 (446)
Q Consensus 390 ~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~~~~ 425 (446)
.+.+.+.+.-..+..+..+ +++++++.|..++.++.
T Consensus 13 ~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~Wk 49 (53)
T PF08711_consen 13 VELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKWK 49 (53)
T ss_dssp HHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 5788889988889999888 99999999999998763
No 360
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.00 E-value=26 Score=33.07 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=58.2
Q ss_pred ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhh-cC-CCHHHHHHHHHH
Q 043676 343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQ-SH-DNNEIHEKSVKI 420 (446)
Q Consensus 343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~-~~~~v~~~a~~~ 420 (446)
++..|.+-+.+.++.++..|+..|..+++.++.. |+..+.+.+++..+..+. ++ .+..|++++..+
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~------------fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~L 106 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYS------------FHLQVASKEFLNEMVKRPKNKPRDLKVREKILEL 106 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHH------------HHHHHHHHHHHHHHHhccccCCcchhHHHHHHHH
Confidence 4555667777788899999999999999988876 678888888888866554 44 578899999999
Q ss_pred HHHhcCC
Q 043676 421 FKTYWCG 427 (446)
Q Consensus 421 l~~~~~~ 427 (446)
|+.|...
T Consensus 107 I~~W~~a 113 (470)
T KOG1087|consen 107 IDTWQQA 113 (470)
T ss_pred HHHHHHH
Confidence 9988543
No 361
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.64 E-value=41 Score=31.79 Aligned_cols=75 Identities=7% Similarity=-0.038 Sum_probs=61.9
Q ss_pred ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCC--CHHHHHHHHHHHHHHHHhhh
Q 043676 300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCS--DPEIVTVCLIGLENILKVGE 374 (446)
Q Consensus 300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~~~~~~~~~l~~l~~~~~ 374 (446)
++..|.+-+.+.++.++..|+..|--+..+++......+.+++++..++.+.+.. +..|+.+++..|...-..-.
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~ 115 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFC 115 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHcc
Confidence 5666777788888899999999888888888877777888999999999988665 67899999999988765433
No 362
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=66.35 E-value=24 Score=24.32 Aligned_cols=67 Identities=15% Similarity=0.146 Sum_probs=44.3
Q ss_pred HhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh----cCCcchHHHHHHHHH
Q 043676 253 INHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQ----NAEFDTKKEAAWAIS 324 (446)
Q Consensus 253 ~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~~~v~~~a~~aL~ 324 (446)
.+..++.++..++.+..+.++|...+.++.++.....+. +..| .+.++..+. +++..+...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~----i~SG-W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGEN----IKSG-WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHH----HHhc-cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 344577888888766658899999999999997643332 2333 555555554 346667666665553
No 363
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=66.03 E-value=1.2e+02 Score=28.70 Aligned_cols=306 Identities=15% Similarity=0.155 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHhhCCChH-HHHHHHHcCChH-HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh-hhhhHHHHH
Q 043676 102 DDVREQAVWALGNVAGDSPR-CRDLVLSQGALI-PLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQ-VRPALPALA 178 (446)
Q Consensus 102 ~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~i~-~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~~~l~ 178 (446)
...|..++.+|+.++..-+. .... ... .|+..| .+....-+..+..++...+.......... ...+.+.|.
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~-----~~~~~L~~~L-~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~ 174 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQE-----IFQPLLLPYL-NSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLL 174 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHH-----HHHHHHHHHh-cchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHH
Confidence 34577888899888854221 1111 122 467777 66666666677777777776652211111 345667777
Q ss_pred HhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHH-----HHHHhcCC---CCcc--chhHHHHHHH----HhhcC
Q 043676 179 QLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCP-----RLVELLGH---PSPS--VLTPALRTVG----NIVTG 244 (446)
Q Consensus 179 ~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-----~l~~ll~~---~~~~--~~~~a~~~l~----~l~~~ 244 (446)
.+|.++.+..=......+..+-.........+.+.|.++ .|-...+. ..+. -...|-.+.. .+...
T Consensus 175 ~~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~ 254 (441)
T PF12054_consen 175 EILENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKS 254 (441)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHh
Confidence 777744322222233333333333333444455555522 22211111 1111 1111211111 11110
Q ss_pred C---chh--hHHHHh-cCChHHHHHHhc---cCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-Ccc
Q 043676 245 D---DFQ--TQCIIN-HGAVPYLLDMLV---HNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA-EFD 314 (446)
Q Consensus 245 ~---~~~--~~~~~~-~~~~~~l~~~l~---~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~ 314 (446)
- ... .+.+-+ ..-+..-+...+ ...+..++..++.++..+-.- |+.. +.+|..|++-++.+ +..
T Consensus 255 l~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~l-P~KL-----nPiIrpLMdSIK~Een~~ 328 (441)
T PF12054_consen 255 LSPSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGL-PKKL-----NPIIRPLMDSIKREENEL 328 (441)
T ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCc-----cHHHHHHHHHhhccccHH
Confidence 0 000 000000 000011111111 111333444444444444221 1111 24677888888765 778
Q ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCC---CHHHH--HHHHHHHHHHHHhhhhhhcccCCCCccchH
Q 043676 315 TKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCS---DPEIV--TVCLIGLENILKVGEAERNMGTTIGDVNQY 389 (446)
Q Consensus 315 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~---~~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 389 (446)
++..++.+|..+..... .++.=-...++..|+.++-.+ -|+.. ...-..+-.+.+.................-
T Consensus 329 LQ~rsA~slA~Li~~~~--~rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k~~~~~~~~~~~~~~~~~~ 406 (441)
T PF12054_consen 329 LQQRSAESLARLIQLCV--DRKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRKEEDKADHADAASEEREQK 406 (441)
T ss_pred HHHHHHHHHHHHHHHHh--CCCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhhhcccccccccccchhhhh
Confidence 99999999998865321 000001122466666666221 12211 111111111111110000000000111122
Q ss_pred HHHHHHhChHHHHHHhhcCCCHHHHHHHHHHH
Q 043676 390 AQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421 (446)
Q Consensus 390 ~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l 421 (446)
...+.+-|+...|..|...-.+++.++.-++.
T Consensus 407 ~a~I~RrGA~~aL~~l~~~FG~~Lf~~lP~Lw 438 (441)
T PF12054_consen 407 EARIQRRGAELALEQLAKRFGSSLFEKLPKLW 438 (441)
T ss_pred hhHHHhcCHHHHHHHHHHHHhHHHHHhhhHHH
Confidence 45678888888888888777777766655443
No 364
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=65.60 E-value=1.9e+02 Score=30.65 Aligned_cols=141 Identities=7% Similarity=-0.004 Sum_probs=88.1
Q ss_pred hccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCH-HHHHHHHHcCC
Q 043676 265 LVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQ-EQIKHLVREGC 343 (446)
Q Consensus 265 l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~-~~~~~l~~~~~ 343 (446)
.++- .+.+|..++..|+-.+...|. .+.+...+..+=-.|.+.+..||..++.+|-.+...... ..... ....+
T Consensus 296 YRDV-~~~IRaiCiqeLgiWi~~yP~---~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~l-FtsRF 370 (1048)
T KOG2011|consen 296 YRDV-DPDIRAICIQELGIWIKSYPE---IFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLEL-FTSRF 370 (1048)
T ss_pred cccC-chHHHHHHHHHHHHHHHhccH---HHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHH-HHHHH
Confidence 3455 789999999999888765443 456666777777788889999999999999999876321 12222 22335
Q ss_pred hHHHHhcc-cCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHH
Q 043676 344 VKPLCDLL-LCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFK 422 (446)
Q Consensus 344 i~~L~~ll-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~ 422 (446)
-..++++. .+.+..|+...+......... ..+. ..-+..+-.++.+.++.++..|...+.
T Consensus 371 K~RIVeMadrd~~~~Vrav~L~~~~~~~~~------------------g~L~-d~di~~Vy~Li~d~~r~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 371 KDRIVEMADRDRNVSVRAVGLVLCLLLSSS------------------GLLS-DKDILIVYSLIYDSNRRVAVAAGEFLY 431 (1048)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHhcc------------------cccC-hhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 56677777 344555655444333222111 1111 112344567888888888887777666
Q ss_pred HhcCCCC
Q 043676 423 TYWCGRN 429 (446)
Q Consensus 423 ~~~~~~~ 429 (446)
.-+....
T Consensus 432 ~k~~~~~ 438 (1048)
T KOG2011|consen 432 KKLFERV 438 (1048)
T ss_pred HHhhccc
Confidence 5544333
No 365
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=64.99 E-value=47 Score=25.69 Aligned_cols=101 Identities=16% Similarity=0.135 Sum_probs=51.5
Q ss_pred hHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHH
Q 043676 173 ALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCI 252 (446)
Q Consensus 173 ~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 252 (446)
-...++.+|+.+...-....+..|.+-....-+.. ..++.+++..++.-=.....--+..|...|+.+.-+.
T Consensus 23 Qt~~lielLk~~~~~~~~~lldLL~~RV~PGVD~A-A~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGY------- 94 (154)
T PF11791_consen 23 QTAELIELLKNPPAGEEAFLLDLLTNRVPPGVDEA-AYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGY------- 94 (154)
T ss_dssp HHHHHHHHHHS--TT-HHHHHHHHHHSS--TT-HH-HHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SST-------
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHhcCCCCCChH-HHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCC-------
Confidence 34456666665544444445555555443222222 2455555555544322223334556777777666543
Q ss_pred HhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc
Q 043676 253 INHGAVPYLLDMLVHNHEEIIKKEISWIISNITA 286 (446)
Q Consensus 253 ~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 286 (446)
-+..|+.+|.+. +..+...|+.+|.+-..
T Consensus 95 ----NV~~LI~~L~~~-d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 95 ----NVQPLIDLLKSD-DEELAEEAAEALKNTLL 123 (154)
T ss_dssp ----THHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred ----cHHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence 257889999877 88899999999987654
No 366
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=64.26 E-value=1.1e+02 Score=27.68 Aligned_cols=193 Identities=10% Similarity=0.026 Sum_probs=99.1
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCc-HHHHH
Q 043676 131 ALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTN-DKIQA 209 (446)
Q Consensus 131 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~-~~~~~ 209 (446)
++..+..++.++.++......+.++..=+... .......++..+..-+.+..+.+|..-+.+++....... .....
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~ 99 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLK 99 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHH
Confidence 45677777777788887777777766443322 122335667777788888777799988888888775111 11111
Q ss_pred HHHhCcHHHHHHhcCC----CCccch---hHHHHHHHHhhcCCchhhHH-------HH-h--cC--ChHHHHHHhccCch
Q 043676 210 VIEAGVCPRLVELLGH----PSPSVL---TPALRTVGNIVTGDDFQTQC-------II-N--HG--AVPYLLDMLVHNHE 270 (446)
Q Consensus 210 ~~~~~~~~~l~~ll~~----~~~~~~---~~a~~~l~~l~~~~~~~~~~-------~~-~--~~--~~~~l~~~l~~~~~ 270 (446)
+.. .+++.|.+.++. +-+... ..++.++..+.......... +. + .. .-+.+..-+ . +
T Consensus 100 ~~~-~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--~-~ 175 (339)
T PF12074_consen 100 FAE-PFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL--A-S 175 (339)
T ss_pred HHH-HHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--C-C
Confidence 222 566666666643 333222 11222222211111110000 00 0 00 011222222 1 2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--CcchHHHHHHHHHHhccCC
Q 043676 271 EIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA--EFDTKKEAAWAISNATSGG 330 (446)
Q Consensus 271 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~ 330 (446)
.+-....+.++..+..+.......-.....-..++.++-+. .+.+|+.|..++..+....
T Consensus 176 ~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~ 237 (339)
T PF12074_consen 176 EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASN 237 (339)
T ss_pred HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC
Confidence 23333444555554432221111111223556777888777 7899999999999988763
No 367
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=63.79 E-value=1.2e+02 Score=27.79 Aligned_cols=55 Identities=11% Similarity=0.009 Sum_probs=42.3
Q ss_pred CccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC
Q 043676 227 SPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG 287 (446)
Q Consensus 227 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~ 287 (446)
....+..|...|.+...+.+..... .++.-+.+..+. +..+|..|..-|-.+|.+
T Consensus 37 ~~k~k~lasq~ip~~fk~fp~la~~-----a~da~~d~~ed~-d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFKHFPSLADE-----AIDAQLDLCEDD-DVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred chHHHHHHHHHHHHHHhhCchhhhH-----HHHhhhcccccc-chhhHHHHHhccchhccC
Confidence 3445667888888888877776654 455667788888 899999999999988876
No 368
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=63.12 E-value=1.4e+02 Score=28.68 Aligned_cols=142 Identities=17% Similarity=0.138 Sum_probs=82.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC-------ChHHHHHHHHHHHHHcCCCh
Q 043676 6 ALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRED-------YPQLQYEAAWVLINIASGTS 78 (446)
Q Consensus 6 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~-------~~~~~~~a~~~L~~l~~~~~ 78 (446)
.+.+.+.++|+..+..|+..|.. +.-.. ..+|.++.++..+- +-..-...++....+.. ++
T Consensus 211 ~It~a~~g~~~~~r~eAL~sL~T------DsGL~-----~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~-Np 278 (576)
T KOG2549|consen 211 EITEACTGSDEPLRQEALQSLET------DSGLQ-----QLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD-NP 278 (576)
T ss_pred HHHHHHhcCCHHHHHHHHHhhcc------CccHH-----HHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc-CC
Confidence 34555666777788878777653 12221 24667777665432 24555666667777776 65
Q ss_pred hhHHHHHhcCChHHHHHhhCC----------CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccc-cchhH
Q 043676 79 ENTNVVIDHGAVPIFVKLLSS----------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEH-AKLSM 147 (446)
Q Consensus 79 ~~~~~~~~~~~i~~L~~~L~~----------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~ 147 (446)
...-.-.-+..++.++.++-+ ....+|..|+.++..+|......... .+..++..+.+.+.+. .....
T Consensus 279 ~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st 357 (576)
T KOG2549|consen 279 NIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLST 357 (576)
T ss_pred ccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchh
Confidence 554444444567777776543 34678999999999888544332222 3444566677766443 23445
Q ss_pred HHHHHHHHHHhhc
Q 043676 148 LRNATRTLSNFCR 160 (446)
Q Consensus 148 ~~~a~~~L~~l~~ 160 (446)
..-++..|..|..
T Consensus 358 ~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 358 HYGAIAGLSELGH 370 (576)
T ss_pred hhhHHHHHHHhhh
Confidence 5555555555544
No 369
>PLN03205 ATR interacting protein; Provisional
Probab=62.76 E-value=46 Score=30.32 Aligned_cols=157 Identities=15% Similarity=0.143 Sum_probs=84.8
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHH---HhcCChHHHHHhhC-----CCCHHHHHHHHHHHHHhhC
Q 043676 46 VVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVV---IDHGAVPIFVKLLS-----SPSDDVREQAVWALGNVAG 117 (446)
Q Consensus 46 ~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~---~~~~~i~~L~~~L~-----~~~~~v~~~a~~~l~~l~~ 117 (446)
+++.|+.+..-++ ..+...+++.|..+..+--..+..+ -+.+.+ .|..++. +..+.++-.|+.++.-+..
T Consensus 324 LlEaLLdLC~v~n-~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWv-sLfElm~QiAv~~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 324 LVEPLLDLCKAET-AVLVHRSLRVLHVLLEHICGDEKRFEASWDANWH-SLFELMNQIASIRTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred HHHHHHHHHhcCc-hhhhHHHHHHHHHHHHHHhCCcccccccccccHH-HHHHHHHHHHhccchhheeeehhhhhHHhhh
Confidence 4566777777777 6777888877766554211111111 122222 2333322 3456677777777666653
Q ss_pred C--ChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHh----------hcCCCC--------------CChhhhh
Q 043676 118 D--SPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF----------CRGKPE--------------PPFDQVR 171 (446)
Q Consensus 118 ~--~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l----------~~~~~~--------------~~~~~~~ 171 (446)
. ...-|+.+....++..+-++|++.....++..++..|.-| +..... .......
T Consensus 402 ssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~fS 481 (652)
T PLN03205 402 STDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAFG 481 (652)
T ss_pred ccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHhcCCccccccccccccccccccHHHHH
Confidence 2 2233455555556777788887766777777777655433 322100 0111223
Q ss_pred hhHHHHHHhhcC-----CCHhHHHHHHHHHHHhccCCc
Q 043676 172 PALPALAQLVHS-----NDEDVLTYACWSLSYLADGTN 204 (446)
Q Consensus 172 ~~~~~l~~ll~~-----~~~~v~~~~~~~l~~l~~~~~ 204 (446)
.++..|..++.. .+.+++..++..|..++....
T Consensus 482 sIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk 519 (652)
T PLN03205 482 KIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGN 519 (652)
T ss_pred HHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCC
Confidence 344445555543 256777777777777775543
No 370
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=62.53 E-value=36 Score=21.39 Aligned_cols=45 Identities=16% Similarity=0.308 Sum_probs=35.7
Q ss_pred HHHHHHHhChHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCCCccc
Q 043676 389 YAQFVEEAGGLEKIENLQSH-DNNEIHEKSVKIFKTYWCGRNEEED 433 (446)
Q Consensus 389 ~~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~~~~~~~~~~~~ 433 (446)
.++.+.+.|+-..+..+... +++++.+...++.+-+..++.++.+
T Consensus 11 GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~e~~~ 56 (58)
T PF04064_consen 11 GREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEPEEGQ 56 (58)
T ss_pred HHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCC
Confidence 57899999999999888544 5789998888888888877665543
No 371
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=61.51 E-value=9.9 Score=27.38 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=33.8
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHH
Q 043676 318 EAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT 360 (446)
Q Consensus 318 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~ 360 (446)
..+..+..++. .|+....+++.|+++.|+++|.+.+.++..
T Consensus 65 ~~Ik~l~~La~--~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 65 EEIKKLSVLAT--APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHccC--ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 45666777776 578899999999999999999999888754
No 372
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.45 E-value=15 Score=32.75 Aligned_cols=64 Identities=8% Similarity=0.081 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCCChhhHHHHHhcCChHHHHHh--hCCCCHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 043676 65 EAAWVLINIASGTSENTNVVIDHGAVPIFVKL--LSSPSDDVREQAVWALGNVAGDSPRCRDLVLS 128 (446)
Q Consensus 65 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~--L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 128 (446)
+..+.+++++...++..+.+.+.|+++.++.- ..+.+|-+++..+.++.++..++.++++.+.+
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 35678999999889999999999999888763 45678999999999999999988877766543
No 373
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=60.69 E-value=1.4e+02 Score=31.40 Aligned_cols=134 Identities=10% Similarity=-0.019 Sum_probs=84.6
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC---hHHHHHHHHcC
Q 043676 54 LMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS---PRCRDLVLSQG 130 (446)
Q Consensus 54 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~---~~~~~~~~~~~ 130 (446)
.++-. +++|..++..|+--....| ..+.+...+..+-..|.+.+..||..++.+|-.|.... +..+.. -..
T Consensus 296 YRDV~-~~IRaiCiqeLgiWi~~yP---~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lF--tsR 369 (1048)
T KOG2011|consen 296 YRDVD-PDIRAICIQELGIWIKSYP---EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELF--TSR 369 (1048)
T ss_pred cccCc-hHHHHHHHHHHHHHHHhcc---HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHH--HHH
Confidence 34455 8999999999888876444 45677778899999999999999999999999998652 222211 111
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHH
Q 043676 131 ALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSY 198 (446)
Q Consensus 131 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~ 198 (446)
.=..++.+...+.+..++...+..+..+.... .....-+..+..++-+.++.++..+...+..
T Consensus 370 FK~RIVeMadrd~~~~Vrav~L~~~~~~~~~g-----~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 370 FKDRIVEMADRDRNVSVRAVGLVLCLLLSSSG-----LLSDKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHhccc-----ccChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 22345555545556667666665555443332 1112223445566666666666666555543
No 374
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=60.24 E-value=67 Score=29.50 Aligned_cols=84 Identities=17% Similarity=0.103 Sum_probs=51.6
Q ss_pred hhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHH
Q 043676 78 SENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSN 157 (446)
Q Consensus 78 ~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 157 (446)
+......+++..+-.|+.+..+.++.-|+..-.+|.++...-..++..+.. +.-..+++.+.....-.=....+..|+.
T Consensus 167 ~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~firk-~iNNif~~FIyEte~hnGIaELLEIlgS 245 (457)
T KOG2085|consen 167 PSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFIRK-SINNIFLRFIYETERHNGIAELLEILGS 245 (457)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHHH-hhcchhhhhcccccccCCHHHHHHHHHH
Confidence 455566677888889999999999999998888888887544444444432 2333444444222222223445556666
Q ss_pred hhcCC
Q 043676 158 FCRGK 162 (446)
Q Consensus 158 l~~~~ 162 (446)
+..+.
T Consensus 246 iIngf 250 (457)
T KOG2085|consen 246 IINGF 250 (457)
T ss_pred hcCcc
Confidence 55554
No 375
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=59.92 E-value=34 Score=28.33 Aligned_cols=115 Identities=14% Similarity=0.156 Sum_probs=42.3
Q ss_pred hcCChHHHHHHhccCc-----------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchH
Q 043676 254 NHGAVPYLLDMLVHNH-----------------EEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTK 316 (446)
Q Consensus 254 ~~~~~~~l~~~l~~~~-----------------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~ 316 (446)
+.|++..++.+++.+. -..+-..+...|..++.+++++...+.+ -++.++..+.......-
T Consensus 41 nl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~--~~~~l~~~~~~~~~~~~ 118 (207)
T PF01365_consen 41 NLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFK--HLDFLISIFMQLQIGYG 118 (207)
T ss_dssp HTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHH--HHH-----HHCCCH-TT
T ss_pred HHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH--HHhHHHHHHHHhhccCC
Confidence 5666666666664321 1346677889999999998888877776 33333333333222222
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhh
Q 043676 317 KEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGE 374 (446)
Q Consensus 317 ~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~ 374 (446)
..+..++..+... +++....+.+. .+..+++++.....+ ..-+..|..++...+
T Consensus 119 ~~~~d~l~~i~~d-N~~L~~~i~e~-~I~~~i~ll~~~gr~--~~~L~~L~~lc~~~g 172 (207)
T PF01365_consen 119 LGALDVLTEIFRD-NPELCESISEE-HIEKFIELLRKHGRQ--PRYLDFLSSLCVCNG 172 (207)
T ss_dssp HHHHHHHHHHHTT---------------------------------------------
T ss_pred chHHHHHHHHHHC-cHHHHHHhhHH-HHHHHHHHHHHcCCC--hHHHHHHhhhcccCC
Confidence 3567778888765 45666664443 488888888763322 234667777666543
No 376
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=59.59 E-value=50 Score=22.08 Aligned_cols=36 Identities=19% Similarity=0.364 Sum_probs=30.9
Q ss_pred HHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043676 390 AQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYW 425 (446)
Q Consensus 390 ~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 425 (446)
.+.+.+.+.-..+..|-.|+++++...|..++..+-
T Consensus 37 ~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~Wk 72 (76)
T cd00183 37 VEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSWK 72 (76)
T ss_pred HHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 578888887788999999999999999999988763
No 377
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.59 E-value=2.5e+02 Score=29.82 Aligned_cols=352 Identities=15% Similarity=0.139 Sum_probs=177.8
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV 83 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 83 (446)
+|.++..+..-...+|..-++.+.-....-+.-+.++ +-.|+-+|+.+-...++...+....++.+-+...+..
T Consensus 511 vpllvlnmegfPsslqvkiLkilEyAVtvvncvPeqE------LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkv 584 (2799)
T KOG1788|consen 511 VPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPEQE------LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKV 584 (2799)
T ss_pred cchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcHHH------HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4555555554445555555554442211111111222 3345666777654556666666666666656777788
Q ss_pred HHhcCChHHHHHhhCC------C---------------CHHHH--------------------------H------HHHH
Q 043676 84 VIDHGAVPIFVKLLSS------P---------------SDDVR--------------------------E------QAVW 110 (446)
Q Consensus 84 ~~~~~~i~~L~~~L~~------~---------------~~~v~--------------------------~------~a~~ 110 (446)
+.+-|+++.|...++. + ++..+ + ....
T Consensus 585 lREVGvLevLqddlkqhkll~gpdqysgvsehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwD 664 (2799)
T KOG1788|consen 585 LREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWD 664 (2799)
T ss_pred HHHhhHHHHHHHHHHHhhhccCcchhhhHHHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHH
Confidence 8888888888766542 1 00000 0 0122
Q ss_pred HHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC------
Q 043676 111 ALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSN------ 184 (446)
Q Consensus 111 ~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~------ 184 (446)
+|..+...+.++...+.+..++..++..+ -+.+-+...++.+..+....+.... ..-+-.++..|+++
T Consensus 665 cLisllKnnteNqklFreanGvklilpfl---indehRSslLrivscLitvdpkqvh---hqelmalVdtLksgmvt~Is 738 (2799)
T KOG1788|consen 665 CLISLLKNNTENQKLFREANGVKLILPFL---INDEHRSSLLRIVSCLITVDPKQVH---HQELMALVDTLKSGMVTRIS 738 (2799)
T ss_pred HHHHHHhccchhhHHHHhhcCceEEEEee---echHHHHHHHHHHHHHhccCccccc---HHHHHHHHHHHHhcceeccc
Confidence 33444444444555555555544444443 1334566667777776665433211 12334455555541
Q ss_pred --C----HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC----------CCccchhHHHHHHHHh----hcC
Q 043676 185 --D----EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH----------PSPSVLTPALRTVGNI----VTG 244 (446)
Q Consensus 185 --~----~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~----------~~~~~~~~a~~~l~~l----~~~ 244 (446)
+ .......+.+++.+...+......+.+.+++..|...|-. .+.-+-..-...+..+ ...
T Consensus 739 geqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavce 818 (2799)
T KOG1788|consen 739 GEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCE 818 (2799)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhh
Confidence 1 2344556666777665555455556777777766665432 1111111122222221 122
Q ss_pred CchhhHH-------------HHhcC---------ChHHHHH----HhccCchHHHHHHHHHHHHHHh---------cC-C
Q 043676 245 DDFQTQC-------------IINHG---------AVPYLLD----MLVHNHEEIIKKEISWIISNIT---------AG-N 288 (446)
Q Consensus 245 ~~~~~~~-------------~~~~~---------~~~~l~~----~l~~~~~~~v~~~a~~~l~~l~---------~~-~ 288 (446)
++.++.. +.+.| .+..+.+ .+..+ .-.--..|+..+-.+- .+ .
T Consensus 819 nasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvpp-fLtSEsaAcaeVfelednifavntPsGqf 897 (2799)
T KOG1788|consen 819 NASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPP-FLTSESAACAEVFELEDNIFAVNTPSGQF 897 (2799)
T ss_pred cchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCc-hhhhhHHHHHHHhhcccceeeeccCCCCc
Confidence 2222221 11222 1111111 11111 1111112232222221 01 1
Q ss_pred HHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhccc---CCCHHHHHHHHHH
Q 043676 289 REQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL---CSDPEIVTVCLIG 365 (446)
Q Consensus 289 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~---~~~~~~~~~~~~~ 365 (446)
....+.+...|++..+++.+-...+.++.+-+..+..++.. ++.+...+...|+++.|.+++. +++......++.+
T Consensus 898 npdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRa-spfnaelltS~gcvellleIiypflsgsspfLshalkI 976 (2799)
T KOG1788|consen 898 NPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARA-SPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKI 976 (2799)
T ss_pred CchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhc-CCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHH
Confidence 12335677889999999988888899999999999998876 4566677677889998888764 3444444555555
Q ss_pred HHHH
Q 043676 366 LENI 369 (446)
Q Consensus 366 l~~l 369 (446)
+.-+
T Consensus 977 vemL 980 (2799)
T KOG1788|consen 977 VEML 980 (2799)
T ss_pred HHHH
Confidence 5544
No 378
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=58.34 E-value=2.3e+02 Score=29.32 Aligned_cols=195 Identities=12% Similarity=0.094 Sum_probs=94.5
Q ss_pred hhhHHHHHHhhcCC-CHhHHHHHHHHHHHhccC-----Cc-HHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676 171 RPALPALAQLVHSN-DEDVLTYACWSLSYLADG-----TN-DKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT 243 (446)
Q Consensus 171 ~~~~~~l~~ll~~~-~~~v~~~~~~~l~~l~~~-----~~-~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~ 243 (446)
...++.++.++... ++.++..+...|+.++.. .+ .....+...+.+..|+..+-.+. .-....+..+..+..
T Consensus 189 ~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~-~s~s~lVs~i~vlI~ 267 (838)
T KOG2073|consen 189 QELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDG-TSLSVLVSGIIVLIS 267 (838)
T ss_pred HHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCC-cchhhHHHHHHHHHH
Confidence 67889999988854 688888888888888765 33 34455666677777766654422 222222233322222
Q ss_pred CCchhhHHHHhcC-ChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChH---HHHHHHhcCCcchHHHH
Q 043676 244 GDDFQTQCIINHG-AVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIR---PIVNLLQNAEFDTKKEA 319 (446)
Q Consensus 244 ~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~---~L~~ll~~~~~~v~~~a 319 (446)
-....+..+ ... ....+.+-.... ++.+....+.++..-. .+..+.+.+...-+ .-...+.-.=...|.+.
T Consensus 268 ll~~~r~~~-~~~~~~~i~~q~~~~~-d~~~~~~~l~~~~p~L---~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rlki 342 (838)
T KOG2073|consen 268 LLNPRRDTV-ETNSTTTILSQPPSER-DPIVLNELLGAMEPRL---GDFVQLLLEPEKLDLLETTYGELEPPLGFERLKI 342 (838)
T ss_pred hcCcccccc-cccceeeeecCCcccc-CccchHHHHHHHHHHH---HHHHHHhcCCccchhhhhhhhccCCCcchHHHHH
Confidence 111111100 000 001111111122 3334444433333221 11112222211111 11111111123567778
Q ss_pred HHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHH--HHHHHHHHHHHHHH
Q 043676 320 AWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPE--IVTVCLIGLENILK 371 (446)
Q Consensus 320 ~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~--~~~~~~~~l~~l~~ 371 (446)
+..+..+....+......+...+++..+.+++...... +...+-.+|.....
T Consensus 343 ~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~nN~lh~~~e~~I~~~~~ 396 (838)
T KOG2073|consen 343 VELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYPWNNFLHAQVESCIVENLS 396 (838)
T ss_pred HHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcchhHHHHHHHHHHHHHhhh
Confidence 88888887776777777777777777777777654333 44444444444443
No 379
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=57.90 E-value=1.4e+02 Score=26.57 Aligned_cols=126 Identities=12% Similarity=0.185 Sum_probs=84.1
Q ss_pred HHHHHcCChHHHHHHhcc----------------------ccchhHHHHHHHHHHHhhcCCCC-----------------
Q 043676 124 DLVLSQGALIPLLAELNE----------------------HAKLSMLRNATRTLSNFCRGKPE----------------- 164 (446)
Q Consensus 124 ~~~~~~~~i~~l~~~l~~----------------------~~~~~~~~~a~~~L~~l~~~~~~----------------- 164 (446)
..+.+.|.++.|-+++.+ +++..++.+-++.+.++|...+.
T Consensus 3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF12463_consen 3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESEL 82 (303)
T ss_pred HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccccc
Confidence 355677777777666521 11224677888888888873311
Q ss_pred -----CChhhhhhhHHHHHHhhcCC--CHhHHHHHHHHHHHhccCCcH--HHHHHHHhCcHHHHHHhcCCCC---ccchh
Q 043676 165 -----PPFDQVRPALPALAQLVHSN--DEDVLTYACWSLSYLADGTND--KIQAVIEAGVCPRLVELLGHPS---PSVLT 232 (446)
Q Consensus 165 -----~~~~~~~~~~~~l~~ll~~~--~~~v~~~~~~~l~~l~~~~~~--~~~~~~~~~~~~~l~~ll~~~~---~~~~~ 232 (446)
.......|.+..++..+... +...+-....|+-...+..+. ....+.+.|+++.++.-+-++. ..+..
T Consensus 83 ~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q 162 (303)
T PF12463_consen 83 NSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQ 162 (303)
T ss_pred cccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHH
Confidence 11112257777777777644 677788888888888877665 3335677899999988876543 34777
Q ss_pred HHHHHHHHhhcCCchhh
Q 043676 233 PALRTVGNIVTGDDFQT 249 (446)
Q Consensus 233 ~a~~~l~~l~~~~~~~~ 249 (446)
.+...|+.|...+....
T Consensus 163 ~~FDLLGELiK~n~~~f 179 (303)
T PF12463_consen 163 SNFDLLGELIKFNRDAF 179 (303)
T ss_pred HHHHHHHHHHCCCHHHH
Confidence 88899999998876533
No 380
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.77 E-value=2.3e+02 Score=29.18 Aligned_cols=137 Identities=13% Similarity=0.131 Sum_probs=79.0
Q ss_pred HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-----CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHH
Q 043676 186 EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-----PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPY 260 (446)
Q Consensus 186 ~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 260 (446)
....+.++..+..++.+...... ..++.++....+ .++.....+...++.++..-.+.-. .-.-.++.
T Consensus 481 ~~~tEaci~~~~sva~~~~~t~~-----~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~--~ln~sl~~ 553 (982)
T KOG2022|consen 481 LNRTEACIFQFQSVAEYLGETES-----TWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPM--YLNPSLPL 553 (982)
T ss_pred HHHHHHHHHHHHHHHhhcCcchh-----HHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCc--ccCchHHH
Confidence 34455666666666654332222 345666665443 3555666677777666642211111 11235788
Q ss_pred HHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--CcchHHHHHHHHHHhccCCCHH
Q 043676 261 LLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA--EFDTKKEAAWAISNATSGGTQE 333 (446)
Q Consensus 261 l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~ 333 (446)
+++-+..+ +.-..+...+..+|...++......+ +++...-..+... .+..+.....+++.+...-.++
T Consensus 554 L~~~Lh~s---k~s~q~i~tl~tlC~~C~~~L~py~d-~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pE 624 (982)
T KOG2022|consen 554 LFQGLHNS---KESEQAISTLKTLCETCPESLDPYAD-QFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPE 624 (982)
T ss_pred HHHHhcCc---hHHHHHHHHHHHHHHhhhhhCchHHH-HHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHH
Confidence 88888655 44556677788888766655444443 4555555555543 4567778888888886654443
No 381
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=56.86 E-value=2.1e+02 Score=28.43 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=51.4
Q ss_pred hhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHH------HHH--hCcHHHHHHhcCCCCccchhHHHHHHHH
Q 043676 169 QVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQA------VIE--AGVCPRLVELLGHPSPSVLTPALRTVGN 240 (446)
Q Consensus 169 ~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~------~~~--~~~~~~l~~ll~~~~~~~~~~a~~~l~~ 240 (446)
...+-+..+++-++++|++++..++..+....+.+...... +.. .+.+..+..-+ .++..+...+.+|+.
T Consensus 45 ~lk~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~--~~~n~Kk~laDIlSv 122 (878)
T KOG2005|consen 45 QLKGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESM--ADSNLKKWLADILSV 122 (878)
T ss_pred HhhhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhc--cCchhHhHHHHHHHH
Confidence 34677889999999999999999999998877553322211 111 12222222222 456678888899998
Q ss_pred hhcCCchhh
Q 043676 241 IVTGDDFQT 249 (446)
Q Consensus 241 l~~~~~~~~ 249 (446)
|+-...+..
T Consensus 123 Lamt~se~~ 131 (878)
T KOG2005|consen 123 LAMTMSERG 131 (878)
T ss_pred Hheeecccc
Confidence 886554433
No 382
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=56.02 E-value=29 Score=26.77 Aligned_cols=45 Identities=31% Similarity=0.347 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHH
Q 043676 315 TKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILK 371 (446)
Q Consensus 315 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~ 371 (446)
-+..|...|+.|.-+. -+..|+++|.++++++...+..+|++-+-
T Consensus 79 s~~~Av~LLGtM~GGY------------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 79 SPAEAVELLGTMLGGY------------NVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp -HHHHHHHHTTS-SST------------THHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred CHHHHHHHHhhccCCC------------cHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 3455666666664432 27888899988888888888888887543
No 383
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=55.23 E-value=16 Score=26.37 Aligned_cols=42 Identities=29% Similarity=0.318 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHH
Q 043676 64 YEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVRE 106 (446)
Q Consensus 64 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~ 106 (446)
...+..+..++. .|+.=..+++.|+++.|+.+|.+++.++..
T Consensus 64 d~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 455677888887 788888889999999999999998876653
No 384
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.17 E-value=2.3e+02 Score=28.29 Aligned_cols=143 Identities=15% Similarity=0.129 Sum_probs=81.3
Q ss_pred hHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh
Q 043676 90 VPIFVKLL-SSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFD 168 (446)
Q Consensus 90 i~~L~~~L-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 168 (446)
++.+++-| .+.++.-|..|=..|..++ .+|++ +....-++.....+--+--|..+|..+..........
T Consensus 7 Le~lCk~LY~s~D~~~R~~AE~~L~e~s-~spec---------lskCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~ 76 (1082)
T KOG1410|consen 7 LESLCKDLYESTDPTARHRAEKALAELS-ESPEC---------LSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLE 76 (1082)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHc-cCHHH---------HHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHH
Confidence 34555544 4467888888888888877 45554 2233334434444555556667777777666434444
Q ss_pred hhhhhHHHHHHhhcCCCHh----HHHHHHHHHHHhccCC---cHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHh
Q 043676 169 QVRPALPALAQLVHSNDED----VLTYACWSLSYLADGT---NDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241 (446)
Q Consensus 169 ~~~~~~~~l~~ll~~~~~~----v~~~~~~~l~~l~~~~---~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l 241 (446)
..-++-..++.++.++.|+ +....+..++.+.... ..+.+ ..=.+.+..+.+.++..+.+.-.-++.++..+
T Consensus 77 qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~-y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqL 155 (1082)
T KOG1410|consen 77 QRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDE-YVFRDPVDDVTKFLQMDNVEHCIIGVQILSQL 155 (1082)
T ss_pred HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhcccccccccc-chhhhhHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 4456667777888775444 4444455555554321 11111 22226677777777776655555566666666
Q ss_pred hc
Q 043676 242 VT 243 (446)
Q Consensus 242 ~~ 243 (446)
..
T Consensus 156 vq 157 (1082)
T KOG1410|consen 156 VQ 157 (1082)
T ss_pred HH
Confidence 53
No 385
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=54.38 E-value=2.5e+02 Score=28.49 Aligned_cols=105 Identities=12% Similarity=0.145 Sum_probs=68.2
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHH
Q 043676 46 VVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDL 125 (446)
Q Consensus 46 ~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 125 (446)
++..|..+-.++- +.++.+++..+..+....|+.-.. .+..++.-|.+++..+...|...|.+|....|..+..
T Consensus 305 fievLe~lS~D~L-~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 305 FIEVLEELSKDPL-EEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHccccH-HHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 3444444445555 788999999998888866665433 4677888888888888889999998888888876544
Q ss_pred HHHcCChHHHHHHh-ccccchhHHHHHHHHHHHhhcC
Q 043676 126 VLSQGALIPLLAEL-NEHAKLSMLRNATRTLSNFCRG 161 (446)
Q Consensus 126 ~~~~~~i~~l~~~l-~~~~~~~~~~~a~~~L~~l~~~ 161 (446)
+. ..+-+++ +.+.+.....+++.+|..+.-.
T Consensus 379 vi-----~EIer~~FRpn~~~ra~Yyav~fLnQ~~Ls 410 (988)
T KOG2038|consen 379 VI-----DEIERLAFRPNVSERAHYYAVIFLNQMKLS 410 (988)
T ss_pred hH-----HHHHHHHcccCccccceeehhhhhhhhHhc
Confidence 33 3344443 2233444455555555555443
No 386
>PRK09169 hypothetical protein; Validated
Probab=54.15 E-value=4.2e+02 Score=31.02 Aligned_cols=92 Identities=17% Similarity=0.120 Sum_probs=38.8
Q ss_pred hHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhh-cCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676 4 FPALVAGVWS-DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFL-MREDYPQLQYEAAWVLINIASGTSENT 81 (446)
Q Consensus 4 i~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~~~~~~a~~~L~~l~~~~~~~~ 81 (446)
+..+++.+.. ++......+...+...+..+ ..... -.+..-+..++.-+ +-++ ......++..|..-...++..+
T Consensus 165 v~~lLNalSKWP~~~~c~~aa~~lA~~la~~-~~l~~-al~~q~va~~lnalSKwp~-~~~cr~a~~~lA~rL~~~~~l~ 241 (2316)
T PRK09169 165 FALLLNALSKWPDNTDCQTAAEQLADRLASD-SRLLQ-AMDAQEVANALNALSKWPD-SPRCRNAAERLAERLADEPGLL 241 (2316)
T ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHhccC-HHHHH-hcchHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHhcChHHH
Confidence 3445555553 34344444445555444432 22222 22222334444444 3344 3445555555555444345444
Q ss_pred HHHHhcCChHHHHHhhCC
Q 043676 82 NVVIDHGAVPIFVKLLSS 99 (446)
Q Consensus 82 ~~~~~~~~i~~L~~~L~~ 99 (446)
..+-..+ +..++.-|+.
T Consensus 242 ~~l~~q~-va~~LNAlSK 258 (2316)
T PRK09169 242 QSLRAQE-VALLLNALSK 258 (2316)
T ss_pred HhcCHHH-HHHHHHHHhc
Confidence 3333222 3444444443
No 387
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=54.03 E-value=59 Score=29.37 Aligned_cols=61 Identities=21% Similarity=0.344 Sum_probs=41.1
Q ss_pred CCcHHHHHhcC--CHHHHHHhhcCCC--ChHHHHHHHHHHHHHcCCChhhHHHHH------hcCChHHHHH
Q 043676 35 NPPIEKVIQSG--VVPRFVEFLMRED--YPQLQYEAAWVLINIASGTSENTNVVI------DHGAVPIFVK 95 (446)
Q Consensus 35 ~~~~~~~~~~~--~~~~L~~ll~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~------~~~~i~~L~~ 95 (446)
......+...+ ++..|+++++.++ ...++..|+.+|..++.........+. .+|++..+++
T Consensus 253 ~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL~~llR 323 (329)
T PF06012_consen 253 SQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGILPQLLR 323 (329)
T ss_pred HHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccHHHHHH
Confidence 34455566555 9999999998754 368999999999999985554444332 3455555544
No 388
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.03 E-value=2.1e+02 Score=27.15 Aligned_cols=66 Identities=11% Similarity=0.170 Sum_probs=50.6
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676 304 IVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 304 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 375 (446)
+-++..++.+++--.-+.+|..++.+.+.+ +.. ....|+.++.....+++..++.++..+|.-...
T Consensus 12 IeelT~sg~~~~~p~~~k~lkkiv~~sdee-~~~-----~~~~L~~~~~~~h~~vR~l~lqii~elF~rs~~ 77 (661)
T KOG2374|consen 12 IEELTKSGAQEVDPRLLKALKKIVRYSDEE-VRL-----SSQTLMELMRHNHSQVRYLTLQIIDELFMRSKL 77 (661)
T ss_pred HHHHhhcCCcccChHHHHHHHHHHhccHHH-HHH-----HHHHHHHHHhhcCchHHHHHHHHHHHHHHhhHH
Confidence 335566777777777888888888875444 333 477899999999999999999999999875444
No 389
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=52.96 E-value=1.1e+02 Score=24.16 Aligned_cols=80 Identities=11% Similarity=0.180 Sum_probs=51.8
Q ss_pred HHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHH-HhccCc-hHHHHHHHHHHHHHHhc
Q 043676 209 AVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLD-MLVHNH-EEIIKKEISWIISNITA 286 (446)
Q Consensus 209 ~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~-~l~~~~-~~~v~~~a~~~l~~l~~ 286 (446)
.+++..+.+.+.+.+.++++.+-..++.++..+........+.-++ -++..++. ++.++. ...-|..++.++..++.
T Consensus 68 ~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele-~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 68 NLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE-VFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 3556677888888888877888888999999888543222221111 23444444 565442 24677778999999986
Q ss_pred CCH
Q 043676 287 GNR 289 (446)
Q Consensus 287 ~~~ 289 (446)
.+.
T Consensus 147 ~p~ 149 (168)
T PF12783_consen 147 DPQ 149 (168)
T ss_pred Chh
Confidence 543
No 390
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=52.56 E-value=79 Score=28.57 Aligned_cols=64 Identities=25% Similarity=0.418 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHhcC--ChHHHHHhhCCC---CHHHHHHHHHHHHHhhCCChHHHHHH
Q 043676 62 LQYEAAWVLINIASGTSENTNVVIDHG--AVPIFVKLLSSP---SDDVREQAVWALGNVAGDSPRCRDLV 126 (446)
Q Consensus 62 ~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~~L~~~---~~~v~~~a~~~l~~l~~~~~~~~~~~ 126 (446)
+|..|+.++..+.. .+.....+...+ ++..|++++..+ ...++..|+.+|..++.......+.+
T Consensus 238 iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~ 306 (329)
T PF06012_consen 238 IRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVL 306 (329)
T ss_pred HHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 44445555544444 566777777666 899999998863 47889999999999997766555544
No 391
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=51.89 E-value=5.4e+02 Score=31.67 Aligned_cols=285 Identities=12% Similarity=0.056 Sum_probs=135.0
Q ss_pred hHHHHHHhccccchhHHHHHHHHHHHhhcCC--------CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC
Q 043676 132 LIPLLAELNEHAKLSMLRNATRTLSNFCRGK--------PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGT 203 (446)
Q Consensus 132 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--------~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~ 203 (446)
++.++..+ .+.+..+......++..+.... .........++++.+.++..++...-+...+..|..+....
T Consensus 986 ldal~~~l-~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~ 1064 (3550)
T KOG0889|consen 986 LDALVESL-SHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESM 1064 (3550)
T ss_pred HHHHHHHH-hccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhc
Confidence 34444444 3444555555555444332211 12222334566666666666555555555555555555444
Q ss_pred cHHHHHHHHhCcHHHHHHhcCCCCccchh----HHHHHHHHhh---cCC--chhhHHHHhcCChHHHHHHhccCchHHHH
Q 043676 204 NDKIQAVIEAGVCPRLVELLGHPSPSVLT----PALRTVGNIV---TGD--DFQTQCIINHGAVPYLLDMLVHNHEEIIK 274 (446)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~----~a~~~l~~l~---~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~v~ 274 (446)
+...-.-....++..+...+.+...++.. .+-.++-.+. ... ....+.-...+++..++.-+.++ +..||
T Consensus 1065 ~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~np-N~~VR 1143 (3550)
T KOG0889|consen 1065 PSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNP-NSDVR 1143 (3550)
T ss_pred hHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCC-chHHH
Confidence 42111112235566666666553222111 2222222221 111 11111112345777888888888 88999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH--cC--ChHHHHHHHhcCCcchHHHHHHHHHHhccCC------CHHHHHHHHHc---
Q 043676 275 KEISWIISNITAGNREQIQAVID--AG--LIRPIVNLLQNAEFDTKKEAAWAISNATSGG------TQEQIKHLVRE--- 341 (446)
Q Consensus 275 ~~a~~~l~~l~~~~~~~~~~~~~--~~--~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~------~~~~~~~l~~~--- 341 (446)
+.+...|.+++..+...+..+.+ .. .+|.+..-+.......+..-+.++..+..-+ ..+........
T Consensus 1144 ~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~~L 1223 (3550)
T KOG0889|consen 1144 EFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLIAL 1223 (3550)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHHHh
Confidence 99999999997643111221211 01 1222223333334455555555555554432 11211111100
Q ss_pred ------CChHHHHhcccCCC----HHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCH
Q 043676 342 ------GCVKPLCDLLLCSD----PEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNN 411 (446)
Q Consensus 342 ------~~i~~L~~ll~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~ 411 (446)
.... +......++ ..++..|+.++.......+.... ...+++..+ +..+-.-++.+.+
T Consensus 1224 a~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~------~~~~~r~ki-----i~v~fk~l~~~~~ 1291 (3550)
T KOG0889|consen 1224 ADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTP------QHAELREKI-----IAVFFKSLYKRSS 1291 (3550)
T ss_pred hhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccch------hhhhhhhHH-----HHHHHHHHcCChH
Confidence 0011 222222222 23577777777776665554331 112223332 4556667788889
Q ss_pred HHHHHHHHHHHHhcCCCCC
Q 043676 412 EIHEKSVKIFKTYWCGRNE 430 (446)
Q Consensus 412 ~v~~~a~~~l~~~~~~~~~ 430 (446)
++.+.+...+......+..
T Consensus 1292 Ei~~~~~~~l~~v~~~~~~ 1310 (3550)
T KOG0889|consen 1292 ELIEVALEGLRKVLAQDVK 1310 (3550)
T ss_pred HHHHHHHHHHHhhhhcccc
Confidence 9988888888877766443
No 392
>PLN03205 ATR interacting protein; Provisional
Probab=51.13 E-value=2e+02 Score=26.46 Aligned_cols=161 Identities=12% Similarity=0.133 Sum_probs=91.6
Q ss_pred hhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccC---CcHHHHHHHHhCc---HHHHHHh-cCCCCccchhHHHHHHHHh
Q 043676 169 QVRPALPALAQLVHSNDEDVLTYACWSLSYLADG---TNDKIQAVIEAGV---CPRLVEL-LGHPSPSVLTPALRTVGNI 241 (446)
Q Consensus 169 ~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~---~~~~~~~~~~~~~---~~~l~~l-l~~~~~~~~~~a~~~l~~l 241 (446)
....++..|..+..-++.-+...+++.|..+..+ +..+...-.+.++ ++.+.+. ..+.+..++..|+.++..+
T Consensus 320 ~lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVI 399 (652)
T PLN03205 320 NLKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNII 399 (652)
T ss_pred eHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHh
Confidence 3456677777887777777777777666554422 1222222222233 2333333 2346777888998888777
Q ss_pred hcCCch--hhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHH---------------------Hc
Q 043676 242 VTGDDF--QTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVI---------------------DA 298 (446)
Q Consensus 242 ~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~---------------------~~ 298 (446)
...... .++.+....+++.+.++|+.+....|+++|+..+.-+.. .+.....+. ..
T Consensus 400 lmssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN-CpklL~iFcSg~~e~~~ad~eNd~~~n~st~k 478 (652)
T PLN03205 400 VMSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN-CPKLYDRFDSLHEEKNSSDTENDSEGNFFALE 478 (652)
T ss_pred hhccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc-CcHHHHHHhcCCccccccccccccccccccHH
Confidence 654433 233444556788888999876567888888765544421 122211111 00
Q ss_pred ---CChHHHHHHHhc-----CCcchHHHHHHHHHHhccCC
Q 043676 299 ---GLIRPIVNLLQN-----AEFDTKKEAAWAISNATSGG 330 (446)
Q Consensus 299 ---~~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~ 330 (446)
.++.-|-+.+.. .+-++++.++..|..++..+
T Consensus 479 ~fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSG 518 (652)
T PLN03205 479 AFGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSG 518 (652)
T ss_pred HHHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcC
Confidence 123333444432 25578888888888887765
No 393
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=50.21 E-value=1.7e+02 Score=25.44 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=20.0
Q ss_pred HHHHhCcHHHHHHhcCCC-CccchhHHHHHHHHhhcC
Q 043676 209 AVIEAGVCPRLVELLGHP-SPSVLTPALRTVGNIVTG 244 (446)
Q Consensus 209 ~~~~~~~~~~l~~ll~~~-~~~~~~~a~~~l~~l~~~ 244 (446)
.+.+.|+...|+.+..+. ...-....+.++..+..+
T Consensus 173 ~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~ 209 (266)
T PF04821_consen 173 ALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKG 209 (266)
T ss_pred HHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcC
Confidence 345557778888777764 222233445555555443
No 394
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=50.14 E-value=73 Score=28.19 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=42.2
Q ss_pred CChHHHHHHHhcCCcchHHHHHHHHHHhccCC-------------CHHHHHHHHHcCChHHHHhccc
Q 043676 299 GLIRPIVNLLQNAEFDTKKEAAWAISNATSGG-------------TQEQIKHLVREGCVKPLCDLLL 352 (446)
Q Consensus 299 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-------------~~~~~~~l~~~~~i~~L~~ll~ 352 (446)
..+..+++-+.+.+...+..|+.+|..++.+. -..+...+.+.|+++.+.++|.
T Consensus 60 ~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 60 DFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 46777888888888889999999999998764 1234555677899999988874
No 395
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.77 E-value=3.3e+02 Score=28.04 Aligned_cols=247 Identities=13% Similarity=0.076 Sum_probs=133.7
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHh-c
Q 043676 9 AGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVID-H 87 (446)
Q Consensus 9 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~ 87 (446)
+.++++....+-.+...+-++-... +. ..+++ ..+-.|......++ -.+|...+++...-.. +.+.+.. .
T Consensus 31 kGlr~~~t~eqpeavvr~~RLFek~--Pf-pifiN-s~llrLaDaF~~Gn-~llRf~V~rv~~q~g~----hln~v~n~a 101 (970)
T KOG1988|consen 31 KGLRSGKTSEQPEAVVRFPRLFEKY--PF-PIFIN-SQLLRLADAFPVGN-NLLRFAVLRVDQQSGK----HLNKVLNGA 101 (970)
T ss_pred hcccccccccchHHHHHHHHHHhhC--Cc-hhhhh-HHHHHHHHHhccCc-HHHHHHHHHHHhhccc----cchhhhhhh
Confidence 3455554444555555555443331 11 12222 23444555666677 5777777777663222 2222221 2
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh
Q 043676 88 GAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPF 167 (446)
Q Consensus 88 ~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 167 (446)
..+..+.....+.|+.-|..++.+++.+..--| +....+.++..-..++++--.+.++.+...++.....
T Consensus 102 E~lrri~~V~hsnDp~aRAllL~ilg~~s~lip-------Efn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk~--- 171 (970)
T KOG1988|consen 102 EFLRRIFYVDHSNDPVARALLLRILGQLSALIP-------EFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSKD--- 171 (970)
T ss_pred hhhheeEEeecCCCHHHHHHHHHHHHHhhhhcc-------cccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhhh---
Confidence 334444445566889999999999998774433 3344556665543444444456667777766655311
Q ss_pred hhhhhhHHHHHHhhcCC--CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHHhhcC
Q 043676 168 DQVRPALPALAQLVHSN--DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGNIVTG 244 (446)
Q Consensus 168 ~~~~~~~~~l~~ll~~~--~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~~ 244 (446)
...++.-.+-.++... .+..+-..+.++..+....... ..+....++++.. +..+-...-+.++++++..
T Consensus 172 -FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at~A------~ra~~l~m~lv~~tps~d~~v~fL~stT~Lasr 244 (970)
T KOG1988|consen 172 -FACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHATGA------SRAFGLCMSLVSGTPSIDRVVAFLYSTTNLASR 244 (970)
T ss_pred -hHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhhhh------HHHHHHHHHHhcCCCcccceeeehhhhHHHHHH
Confidence 1123333444444433 2445556666677666442211 1333445555544 3333344556777777753
Q ss_pred CchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc
Q 043676 245 DDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA 286 (446)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 286 (446)
.-. .-.+-.+.+.+.++.+....++..+.|.+.+++.
T Consensus 245 s~~-----ai~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 245 SLV-----AISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred HHH-----HhHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 211 1234567788888865467788888888888764
No 396
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=46.47 E-value=1.7e+02 Score=24.20 Aligned_cols=141 Identities=16% Similarity=0.127 Sum_probs=86.3
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHH-HHHHHHhhCCChHHHHH
Q 043676 48 PRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS-PSDDVREQA-VWALGNVAGDSPRCRDL 125 (446)
Q Consensus 48 ~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-~~~~v~~~a-~~~l~~l~~~~~~~~~~ 125 (446)
..+..+..++. .+.+..|+.++.......+.. .++.+-..+.. ++..+.... ..+++.+....
T Consensus 54 ~l~~~L~~~~~-~E~~~la~~il~~~~~~~~~~--------~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------ 118 (213)
T PF08713_consen 54 ELADELWESGY-REERYLALLILDKRRKKLTEE--------DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------ 118 (213)
T ss_dssp HHHHHHHCSSC-HHHHHHHHHHHHHCGGG--HH--------HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------
T ss_pred HHHHHHcCCch-HHHHHHHHHHhHHHhhhhhHH--------HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------
Confidence 34556667777 788888888876644311111 24556666665 556665554 44445443111
Q ss_pred HHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcH
Q 043676 126 VLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTND 205 (446)
Q Consensus 126 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~ 205 (446)
....+.+...+ .+.++-.++.++-++...... ......+..+...+.+++.-++..+.++|..++...++
T Consensus 119 ---~~~~~~~~~W~-~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 119 ---PEALELLEKWA-KSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp ---GGHHHHHHHHH-HCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred ---HHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 11233444445 777888888887665544433 23345566666777888999999999999999998887
Q ss_pred HHHHHHHh
Q 043676 206 KIQAVIEA 213 (446)
Q Consensus 206 ~~~~~~~~ 213 (446)
....++..
T Consensus 189 ~v~~~l~~ 196 (213)
T PF08713_consen 189 EVLEFLQK 196 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766654
No 397
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.56 E-value=79 Score=32.59 Aligned_cols=92 Identities=17% Similarity=0.103 Sum_probs=64.3
Q ss_pred hHHHHHHhccccchhHHHHHHHHHHHh---hcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHH
Q 043676 132 LIPLLAELNEHAKLSMLRNATRTLSNF---CRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQ 208 (446)
Q Consensus 132 i~~l~~~l~~~~~~~~~~~a~~~L~~l---~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~ 208 (446)
+..-..+| .+++..++..++.+|..- ....++.-.......-|.++..+...|+-+...|+.++.+++....+...
T Consensus 805 l~r~~~~L-S~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~ 883 (1014)
T KOG4524|consen 805 LGRGIHLL-SHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVA 883 (1014)
T ss_pred HHHHHHHh-cchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHH
Confidence 33344455 677788888888777642 22223333344567778899999999999999999999999988777666
Q ss_pred HHHHhCcHHHHHHhcC
Q 043676 209 AVIEAGVCPRLVELLG 224 (446)
Q Consensus 209 ~~~~~~~~~~l~~ll~ 224 (446)
.-+-..++|.+-.++.
T Consensus 884 sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 884 SRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555577777765553
No 398
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=45.43 E-value=2.5e+02 Score=27.06 Aligned_cols=63 Identities=19% Similarity=0.135 Sum_probs=37.1
Q ss_pred CChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHH
Q 043676 299 GLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLE 367 (446)
Q Consensus 299 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~ 367 (446)
.++-.+.+-.+..|......+..+++.+.. .+....++ +++.|.-+|..+..+-...|+..+.
T Consensus 238 rLilqf~r~f~RnDk~~c~~~~kfiahLin---q~VahEIv---~Leil~lLLe~PTddSvevaI~flk 300 (739)
T KOG2140|consen 238 RLILQFKRSFRRNDKVSCLNASKFIAHLIN---QQVAHEIV---ALEILTLLLERPTDDSVEVAIAFLK 300 (739)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHhcCCCCchHHHHHHHHH
Confidence 344445555566677777778888887764 33333333 4667777777765544444554443
No 399
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=44.84 E-value=3.8e+02 Score=27.86 Aligned_cols=68 Identities=18% Similarity=0.262 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCChHHHHhcccC-CCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhh
Q 043676 332 QEQIKHLVREGCVKPLCDLLLC-SDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQ 406 (446)
Q Consensus 332 ~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~ 406 (446)
....+.|.+...++.+++++.. .+++++.++-..|+.+++...+.. +++++.+.+...+.+++|...+
T Consensus 180 ~~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~-------gPn~L~~qL~s~e~ieqLl~~m 248 (838)
T KOG2073|consen 180 TDVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQP-------GPNPLTKQLESPETIEQLLKIM 248 (838)
T ss_pred HHHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccC-------CCCHHHHhhcCHHHHHHHHHHH
Confidence 3455666667789999999864 458899999999999998866653 6777899999999999865544
No 400
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=44.60 E-value=1.2e+02 Score=21.96 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=42.8
Q ss_pred hhHHHHHHhhcC----CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCccchhHHHHHHHHhhcCC
Q 043676 172 PALPALAQLVHS----NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLTPALRTVGNIVTGD 245 (446)
Q Consensus 172 ~~~~~l~~ll~~----~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~~~~~a~~~l~~l~~~~ 245 (446)
|++..+...+.+ .+..-+..++.++..+......... .+.+.+...|+. ..++++..|+.+...+...-
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 334444444444 4567788888888888764443333 445556666554 44578888888877776543
No 401
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=43.54 E-value=55 Score=24.11 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=30.8
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHH
Q 043676 89 AVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVL 127 (446)
Q Consensus 89 ~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 127 (446)
+++.|+.-|.+++++|...|+.+|...|... .+-+.++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLV 46 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHH
Confidence 4788999999999999999999999999665 3434433
No 402
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=43.24 E-value=48 Score=17.03 Aligned_cols=17 Identities=18% Similarity=0.694 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhcCCHH
Q 043676 272 IIKKEISWIISNITAGNRE 290 (446)
Q Consensus 272 ~v~~~a~~~l~~l~~~~~~ 290 (446)
.+|..|+++|+++ +++.
T Consensus 2 ~vR~~aa~aLg~~--~~~~ 18 (30)
T smart00567 2 LVRHEAAFALGQL--GDEE 18 (30)
T ss_pred HHHHHHHHHHHHc--CCHh
Confidence 5789999999998 4444
No 403
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=43.00 E-value=46 Score=25.45 Aligned_cols=49 Identities=27% Similarity=0.281 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHH
Q 043676 16 NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVL 70 (446)
Q Consensus 16 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L 70 (446)
......++.++..... .-....+.+.+.++.+.+++.+++ ++..|+.||
T Consensus 100 ~~~~~~~L~~l~s~i~---~~~~~~i~~~~~l~~~~~~l~~~~---~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWIS---WIPIELIINSNLLNLIFQLLQSPE---LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTT---TS-HHHHHSSSHHHHHHHHTTSCC---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---hCCHHHhccHHHHHHHHHHcCCHH---HHHHHHHhC
Confidence 7888899999998777 345677888889999999996654 478888775
No 404
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=42.98 E-value=1.9e+02 Score=23.86 Aligned_cols=142 Identities=15% Similarity=0.044 Sum_probs=88.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHH-HHHHHHhhcCCCCCChhh
Q 043676 91 PIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNA-TRTLSNFCRGKPEPPFDQ 169 (446)
Q Consensus 91 ~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a-~~~L~~l~~~~~~~~~~~ 169 (446)
..+..+..++..+.+..++.++.......+. . .++.+-..+....+..+.... ..++..+....
T Consensus 54 ~l~~~L~~~~~~E~~~la~~il~~~~~~~~~---~-----~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------- 118 (213)
T PF08713_consen 54 ELADELWESGYREERYLALLILDKRRKKLTE---E-----DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------- 118 (213)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHCGGG--H---H-----HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH-------
T ss_pred HHHHHHcCCchHHHHHHHHHHhHHHhhhhhH---H-----HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh-------
Confidence 4555677778888888887777553311111 0 133444444334455555555 33344443221
Q ss_pred hhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhh
Q 043676 170 VRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQT 249 (446)
Q Consensus 170 ~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~ 249 (446)
....+.+...+.++++-.++.++-++........ .. .++..+...+.+++.-++....|+|..++..+++..
T Consensus 119 -~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~~--~~-----~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v 190 (213)
T PF08713_consen 119 -PEALELLEKWAKSDNEWVRRAAIVMLLRYIRKED--FD-----ELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEV 190 (213)
T ss_dssp -GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGGCH--HH-----HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHH
T ss_pred -HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhcC--HH-----HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHH
Confidence 4567888888999999999988777665554411 11 344556666777888899999999999999888877
Q ss_pred HHHHhc
Q 043676 250 QCIINH 255 (446)
Q Consensus 250 ~~~~~~ 255 (446)
...+..
T Consensus 191 ~~~l~~ 196 (213)
T PF08713_consen 191 LEFLQK 196 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766644
No 405
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=42.89 E-value=3.2e+02 Score=26.47 Aligned_cols=139 Identities=12% Similarity=0.117 Sum_probs=82.3
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccc-------cchhHHHHHHHHHHHhhcCCCCC
Q 043676 93 FVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEH-------AKLSMLRNATRTLSNFCRGKPEP 165 (446)
Q Consensus 93 L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-------~~~~~~~~a~~~L~~l~~~~~~~ 165 (446)
+.+.+...++..+..|+..|.. ++.... .++.++..+... .+.....+.+...+.|..+....
T Consensus 212 It~a~~g~~~~~r~eAL~sL~T----DsGL~~------LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~ 281 (576)
T KOG2549|consen 212 ITEACTGSDEPLRQEALQSLET----DSGLQQ------LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIF 281 (576)
T ss_pred HHHHHhcCCHHHHHHHHHhhcc----CccHHH------HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccc
Confidence 3333344566666666655542 222211 255666665322 34567777888888888886444
Q ss_pred ChhhhhhhHHHHHHhhc----------CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCC--ccchhH
Q 043676 166 PFDQVRPALPALAQLVH----------SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPS--PSVLTP 233 (446)
Q Consensus 166 ~~~~~~~~~~~l~~ll~----------~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~~ 233 (446)
--.....++|.++.++- ++.+.+|.-++..+..++..-...... ....++..+.+.+.++. .....-
T Consensus 282 lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 282 LEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred hhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhh
Confidence 44455677777777653 234779999999999999776655543 44567777777776642 333334
Q ss_pred HHHHHHHhh
Q 043676 234 ALRTVGNIV 242 (446)
Q Consensus 234 a~~~l~~l~ 242 (446)
++..|..+.
T Consensus 361 ai~gL~~lg 369 (576)
T KOG2549|consen 361 AIAGLSELG 369 (576)
T ss_pred HHHHHHHhh
Confidence 444444443
No 406
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=42.53 E-value=3.4e+02 Score=26.69 Aligned_cols=98 Identities=16% Similarity=0.092 Sum_probs=69.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh--hhhhhHHH
Q 043676 99 SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFD--QVRPALPA 176 (446)
Q Consensus 99 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~~~~ 176 (446)
+-++.+|..+...++--+..-|. .+....++.+.-..| .+.+..++.....++..|+...|..... ....+...
T Consensus 286 Dv~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~L-SDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~r 361 (740)
T COG5537 286 DVDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSL-SDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDR 361 (740)
T ss_pred chhHHHHHHHHHHHHHHHhcchH---HHHhhhccccccccc-ccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 34577777777777766655454 333434566666666 6778899999999999999998766532 23566777
Q ss_pred HHHhhcCCCHhHHHHHHHHHHHhc
Q 043676 177 LAQLVHSNDEDVLTYACWSLSYLA 200 (446)
Q Consensus 177 l~~ll~~~~~~v~~~~~~~l~~l~ 200 (446)
++.++..+..-||..++..+..+.
T Consensus 362 ILE~~r~D~d~VRi~sik~l~~lr 385 (740)
T COG5537 362 ILEFLRTDSDCVRICSIKSLCYLR 385 (740)
T ss_pred HHHHHhhccchhhHHHHHHHHHHH
Confidence 888888775558888888777654
No 407
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=41.53 E-value=90 Score=25.84 Aligned_cols=79 Identities=11% Similarity=0.116 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhh
Q 043676 102 DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLV 181 (446)
Q Consensus 102 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll 181 (446)
..+...+..+|..+|.+++.++..+.+. ++.++..+.... ...-..+..++..+..+.+..........+..++.++
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~-~~~~~~~~d~l~~i~~dN~~L~~~i~e~~I~~~i~ll 151 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQ-IGYGLGALDVLTEIFRDNPELCESISEEHIEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCC-H-TTHHHHHHHHHHHTT--------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhh-ccCCchHHHHHHHHHHCcHHHHHHhhHHHHHHHHHHH
Confidence 4677888999999998888877766552 332222221111 1111234555566666553333333334456666666
Q ss_pred cC
Q 043676 182 HS 183 (446)
Q Consensus 182 ~~ 183 (446)
..
T Consensus 152 ~~ 153 (207)
T PF01365_consen 152 RK 153 (207)
T ss_dssp --
T ss_pred HH
Confidence 54
No 408
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=41.45 E-value=64 Score=18.57 Aligned_cols=27 Identities=15% Similarity=0.030 Sum_probs=20.9
Q ss_pred hhhhHHHHHHhhcCCCHhHHHHHHHHH
Q 043676 170 VRPALPALAQLVHSNDEDVLTYACWSL 196 (446)
Q Consensus 170 ~~~~~~~l~~ll~~~~~~v~~~~~~~l 196 (446)
...+...+..-+.++++.+|+.++.++
T Consensus 16 ~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 16 SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 346677778888889999999887653
No 409
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.24 E-value=4.6e+02 Score=27.52 Aligned_cols=94 Identities=11% Similarity=-0.013 Sum_probs=69.6
Q ss_pred CChHHHHHHhccCchHHHHHHHHHHHHHHh---cCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCH
Q 043676 256 GAVPYLLDMLVHNHEEIIKKEISWIISNIT---AGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQ 332 (446)
Q Consensus 256 ~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~---~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 332 (446)
.++..-..+|.++ +..+|..|+.++.... +..++..-.++ +...|.++..+..+++-+...|+.++.++...++.
T Consensus 803 kIl~r~~~~LS~e-~l~irvkaLdvl~~gl~~La~~~n~LlPlv-hq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 803 KILGRGIHLLSHE-SLRIRVKALDVLSLGLPLLATYHNLLLPLV-HQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHhcch-hHHHHHHHHHHHHhccHHHhccchhHhHHH-HhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence 4667777888888 8899999988887643 23333333333 35889999999999999999999999999988766
Q ss_pred HHHHHHHHcCChHHHHhccc
Q 043676 333 EQIKHLVREGCVKPLCDLLL 352 (446)
Q Consensus 333 ~~~~~l~~~~~i~~L~~ll~ 352 (446)
-....+.+ .++|.+..++.
T Consensus 881 Fv~sR~l~-dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 881 FVASRFLE-DVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHHH-HHHHHHHHHHH
Confidence 55666544 47787776653
No 410
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=37.52 E-value=3.8e+02 Score=25.80 Aligned_cols=229 Identities=12% Similarity=0.057 Sum_probs=120.4
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCC-----------CCCChhhhhhhHHHHHHhhcCC--------CHhHHHH
Q 043676 131 ALIPLLAELNEHAKLSMLRNATRTLSNFCRGK-----------PEPPFDQVRPALPALAQLVHSN--------DEDVLTY 191 (446)
Q Consensus 131 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-----------~~~~~~~~~~~~~~l~~ll~~~--------~~~v~~~ 191 (446)
+|..+.+.+..+....++.+++|.|+.+-... +.....-...++...+.++-.. -+....-
T Consensus 98 vir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvkv 177 (589)
T PF11229_consen 98 VIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVKV 177 (589)
T ss_pred HHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHHH
Confidence 57788888877778889999999998763221 1111122345666666665421 1334444
Q ss_pred HHHHHHHhc---cCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccC
Q 043676 192 ACWSLSYLA---DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHN 268 (446)
Q Consensus 192 ~~~~l~~l~---~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 268 (446)
++.-+.... ..+|-+-. -++..|+++ +-..+++..++.+...=+.. ......++..=+.|.++.-+..
T Consensus 178 vl~~ia~vgeS~qyPPVNWa-----alLsPLMRl--nfGeEvq~lCLeiAvtQaqS-SqsAa~fLg~WlsPpli~sLs~- 248 (589)
T PF11229_consen 178 VLKPIATVGESYQYPPVNWA-----ALLSPLMRL--NFGEEVQQLCLEIAVTQAQS-SQSAAMFLGSWLSPPLIHSLSV- 248 (589)
T ss_pred HHHHhhhcCCCCCCCCccHH-----HHhhHHHhc--cccHHHHHHHHHHHHHhccc-cccHHHHHHhhcCcchhhhhhH-
Confidence 444443332 22222222 234445444 22455666666544333332 2234445555556666655543
Q ss_pred chHHHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHH
Q 043676 269 HEEIIKKEISWIISNITA-GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPL 347 (446)
Q Consensus 269 ~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L 347 (446)
..++.-+.-+.-... -+++.++.+++.-++..+-..-.-.++++...++..|..-.+..+|.+.-.-.-....+.+
T Consensus 249 ---~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc~ttekI 325 (589)
T PF11229_consen 249 ---NTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPSPAQHCWSLLCETTEKI 325 (589)
T ss_pred ---HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Confidence 345554545555444 3566667676633343333332335688888999998887665554432221112256667
Q ss_pred Hhccc----CCCHHHHHHHHHHHHHHHH
Q 043676 348 CDLLL----CSDPEIVTVCLIGLENILK 371 (446)
Q Consensus 348 ~~ll~----~~~~~~~~~~~~~l~~l~~ 371 (446)
.+++- .++-++.....++|..+.+
T Consensus 326 F~lLPn~i~~~eveLYi~vAkCLSEMtd 353 (589)
T PF11229_consen 326 FDLLPNKIQRNEVELYIGVAKCLSEMTD 353 (589)
T ss_pred HHhCcccccHHHHHHHHHHHHHHhhcCH
Confidence 77662 2344555555666655433
No 411
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=37.28 E-value=1.4e+02 Score=21.64 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=40.8
Q ss_pred hhHHHHHHhhcCC----CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCccchhHHHHHHHHhhcCC
Q 043676 172 PALPALAQLVHSN----DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLTPALRTVGNIVTGD 245 (446)
Q Consensus 172 ~~~~~l~~ll~~~----~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~~~~~a~~~l~~l~~~~ 245 (446)
|++..+...+.+. +..-+..++.++..+......... .+.|.+..+|++ ..++.+..|+.+...+...-
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~-----~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS-----SALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 3444444444433 234477788888877764332222 445566666655 56678888888887776543
No 412
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=36.58 E-value=1.8e+02 Score=23.64 Aligned_cols=74 Identities=14% Similarity=0.206 Sum_probs=50.9
Q ss_pred HHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 043676 217 PRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVI 296 (446)
Q Consensus 217 ~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 296 (446)
+.+.....+++.-++..+..++....... .... .+++.+-.++.++ +..++....|+|..++...++....++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~d~-~~~Vqkav~w~L~~~~~~~~~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKE-TDFD-----LLLEIIERLLHDE-EYFVQKAVGWALREYGKKDPERVIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhc-ccHH-----HHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 66777888888888888877776665531 1111 1344455555566 899999999999999887676555544
Q ss_pred H
Q 043676 297 D 297 (446)
Q Consensus 297 ~ 297 (446)
+
T Consensus 181 ~ 181 (197)
T cd06561 181 E 181 (197)
T ss_pred H
Confidence 3
No 413
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=36.37 E-value=3.2e+02 Score=24.48 Aligned_cols=128 Identities=8% Similarity=-0.047 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHhhcCCCCCChh-hhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC
Q 043676 146 SMLRNATRTLSNFCRGKPEPPFD-QVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLG 224 (446)
Q Consensus 146 ~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~ 224 (446)
.+-..|+.+...+...-...... ...-..+.+..++......++...+..+....-.-+...... -.|++..++.-+.
T Consensus 70 GVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~-l~~li~slLpGLe 148 (307)
T PF04118_consen 70 GVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPC-LKGLILSLLPGLE 148 (307)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHH-HHHHHHHhccccc
Confidence 44455555544444332111111 113345677777888888888888888876554333333323 3378888888888
Q ss_pred CCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHH
Q 043676 225 HPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISN 283 (446)
Q Consensus 225 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~ 283 (446)
++..+....+...+..+...-... -+...+...+.+ ++..|..|...+..
T Consensus 149 de~sE~~~~~~~ll~~l~~~v~~~-------~F~~~lwl~ii~--sp~~Rl~al~~l~~ 198 (307)
T PF04118_consen 149 DEGSEFFDRTLKLLDKLKEAVGDK-------YFWQCLWLCIIT--SPSRRLGALNYLLR 198 (307)
T ss_pred cCCchHHHHHHHHHHHHHHhcChh-------HHHHHHHHHHhc--CcchhHHHHHHHHH
Confidence 888888888888888877532221 234444444432 23566666544433
No 414
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=34.85 E-value=1.9e+02 Score=21.38 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=45.3
Q ss_pred hhhHHHHHHhhc-CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCC
Q 043676 171 RPALPALAQLVH-SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGD 245 (446)
Q Consensus 171 ~~~~~~l~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~ 245 (446)
...+|.+...+. +..++.+..+...++.++...+-... +++ .++..+......... ...++.++..++...
T Consensus 5 ~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~-~l~-~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 5 PRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDE-VLN-ALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHH-HHH-HHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 456788888888 67899999999999999876542221 222 233333333322222 477888888888544
No 415
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=34.08 E-value=1.9e+02 Score=21.30 Aligned_cols=65 Identities=25% Similarity=0.236 Sum_probs=43.2
Q ss_pred ChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhh-cCCCChHH-HHHHHHHHHHHcC
Q 043676 3 SFPALVAGVW-SDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFL-MREDYPQL-QYEAAWVLINIAS 75 (446)
Q Consensus 3 ~i~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~~~-~~~a~~~L~~l~~ 75 (446)
.+|.+.+.|+ +..++.+..+...+..+++.. +-.+. ++..+++.+ +... +.. +..++.++..++.
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~--~L~~~-----~l~~l~~~i~~~~~-~~~~~~~~l~~L~~l~q 74 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKV--PLSDE-----VLNALMESILKNWT-QETVQRQALICLIVLCQ 74 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc--CCcHH-----HHHHHHHHHHhccc-cchhHHHHHHHHHHHHH
Confidence 3688899999 778999999998888888763 32232 344444333 2222 222 4788888888886
No 416
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=33.99 E-value=2.2e+02 Score=21.94 Aligned_cols=83 Identities=16% Similarity=0.125 Sum_probs=47.1
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC
Q 043676 87 HGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPP 166 (446)
Q Consensus 87 ~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 166 (446)
...-..+..+|.+++++++..|+.|+...- .+.. .. .=+.|-+++ + +..++.... .+. +..+.....
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k--~~~l----~p--Y~d~L~~Ll-d--d~~frdeL~-~f~-~~~~~~~I~ 82 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWK--DPYL----TP--YKDNLENLL-D--DKTFRDELT-TFN-LSDESSVIE 82 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--cHHH----Hh--HHHHHHHHc-C--cchHHHHHH-hhc-ccCCcCCCC
Confidence 344567889999999999999999997653 2211 11 113444555 2 233333322 222 222222344
Q ss_pred hhhhhhhHHHHHHhhc
Q 043676 167 FDQVRPALPALAQLVH 182 (446)
Q Consensus 167 ~~~~~~~~~~l~~ll~ 182 (446)
......++|.++.+|-
T Consensus 83 ~ehR~~l~pvvlRILy 98 (141)
T PF07539_consen 83 EEHRPELMPVVLRILY 98 (141)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 4555788888888774
No 417
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.09 E-value=7.2e+02 Score=27.63 Aligned_cols=252 Identities=12% Similarity=0.126 Sum_probs=124.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHH----HHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676 5 PALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRF----VEFLMREDYPQLQYEAAWVLINIASGTSEN 80 (446)
Q Consensus 5 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L----~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 80 (446)
..+++.|..-|+..+..|+..|.++....+.+.. .+++|.. .+++.+++ ..+|...-.++.++...-...
T Consensus 44 ~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~-----~~il~~w~~i~~kl~~d~~-~~VR~~t~~v~s~l~t~lkk~ 117 (1312)
T KOG0803|consen 44 DIIVKKLLKRDETTKIKALQELSELIDTSDTEEL-----KGILPEWLVIYAKLIIDED-RTVRLLTHDVFSKLLTKLKKK 117 (1312)
T ss_pred HHHHHHHhccChHHHHHHHHhHHHhcccccchHH-----hhhHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999999998775422111 1234333 34556677 899999999999988722111
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHH--cCChHHHHHHhcc-----------------
Q 043676 81 TNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLS--QGALIPLLAELNE----------------- 141 (446)
Q Consensus 81 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~i~~l~~~l~~----------------- 141 (446)
.....+ ..++...-.-.+.+..+...|...+...... ...+..... ..+.....+.+..
T Consensus 118 lsp~LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~-ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~ 195 (1312)
T KOG0803|consen 118 LSPFLK-SLIPPWLGGQFDLDYPVSEAAKASFKDGFAE-EKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEEL 195 (1312)
T ss_pred hhHHHH-hhhhhhhheecccchHHHHHHHHHHHhhcCh-hhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHH
Confidence 111111 2233333333344555665665555554431 111111111 1111111111100
Q ss_pred -ccchhHHHHHHHHHHHhhcCC-CCCChhh----hhh--hHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHh
Q 043676 142 -HAKLSMLRNATRTLSNFCRGK-PEPPFDQ----VRP--ALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEA 213 (446)
Q Consensus 142 -~~~~~~~~~a~~~L~~l~~~~-~~~~~~~----~~~--~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~ 213 (446)
....++...++-++..+.... +...... ... --..+..++++..+.++.+...++..+...-.... .-.+.
T Consensus 196 E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~-~~~~~ 274 (1312)
T KOG0803|consen 196 ESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRV-MESEK 274 (1312)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhc-chhhh
Confidence 011245556666666655332 2211111 111 12455677788888999998888888886644331 11122
Q ss_pred CcHH-HHHHhcCCCCccchhHHHHHHHHh-hcCCchhhHHH--HhcCChHHHHHHhc
Q 043676 214 GVCP-RLVELLGHPSPSVLTPALRTVGNI-VTGDDFQTQCI--INHGAVPYLLDMLV 266 (446)
Q Consensus 214 ~~~~-~l~~ll~~~~~~~~~~a~~~l~~l-~~~~~~~~~~~--~~~~~~~~l~~~l~ 266 (446)
..+. .+....++.+ .+.......+... ....+.....- ...++++.+.++++
T Consensus 275 ~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 275 NYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR 330 (1312)
T ss_pred hHhhHHHHccccccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence 3333 3333333334 3333333344322 22222222211 34567777777776
No 418
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=32.48 E-value=2.6e+02 Score=22.37 Aligned_cols=54 Identities=11% Similarity=-0.020 Sum_probs=32.3
Q ss_pred HHHhcCCCCccchhHHHHHHHHhh-cCCchhhHHHHhcCChHHHHHHhccCchHHH
Q 043676 219 LVELLGHPSPSVLTPALRTVGNIV-TGDDFQTQCIINHGAVPYLLDMLVHNHEEII 273 (446)
Q Consensus 219 l~~ll~~~~~~~~~~a~~~l~~l~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v 273 (446)
|.+++.+.+..--..|..+...|. ....+....+++. +++.+.+.|.++.+.++
T Consensus 47 L~d~Ils~~~~e~~kA~~IF~~L~~~l~~efl~~~~~~-L~~~~~~~L~~p~~~d~ 101 (174)
T PF04510_consen 47 LSDCILSLSENEPVKAFHIFICLPMPLYGEFLIPFMEN-LLPEISKVLLPPEEVDV 101 (174)
T ss_pred HHHHHHHhhccchHHHHHHHHhCCchhhhhHHHHHHHH-HHHHHHHHcCCchhccH
Confidence 334433323333467888887777 4445555555554 88888888887743333
No 419
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=32.46 E-value=3.8e+02 Score=25.80 Aligned_cols=108 Identities=10% Similarity=0.101 Sum_probs=60.0
Q ss_pred hhhHHHHHHhhcCC----CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhc-CC
Q 043676 171 RPALPALAQLVHSN----DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT-GD 245 (446)
Q Consensus 171 ~~~~~~l~~ll~~~----~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~-~~ 245 (446)
..+-..|..+|+.. ++.++...+.+|.-|-...- +.-..++..++.++..++...|..+..-+..... .+
T Consensus 15 a~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~-----i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n 89 (616)
T KOG2229|consen 15 ANFPSELKDLLRTNHTVLPPELREKIVKALILLRNKNL-----IVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNIN 89 (616)
T ss_pred HhhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCc-----CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Confidence 44555677777754 68899999888877654332 2223677888888888888777665433322221 11
Q ss_pred chhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHH
Q 043676 246 DFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNI 284 (446)
Q Consensus 246 ~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l 284 (446)
......-....+-..+..+|..+ ++.--..|+.++..|
T Consensus 90 ~~~kn~klnkslq~~~fsml~~~-d~~~ak~a~~~~~eL 127 (616)
T KOG2229|consen 90 KKHKNDKLNKSLQAFMFSMLDQS-DSTAAKMALDTMIEL 127 (616)
T ss_pred hhcccchHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHH
Confidence 11111111222334567778777 554334444444444
No 420
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=31.31 E-value=2.1e+02 Score=31.91 Aligned_cols=147 Identities=11% Similarity=0.090 Sum_probs=0.0
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHH
Q 043676 46 VVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDL 125 (446)
Q Consensus 46 ~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 125 (446)
++...-.++.+.+ +.++.-+......+.... +...+..++..|+..+-+.+..-...|+.+|..++...+..-..
T Consensus 436 iL~la~~Ll~S~e-~~v~~FG~~~Y~~lF~~f----ds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~ 510 (1426)
T PF14631_consen 436 ILSLAQSLLRSKE-PSVREFGSHLYKYLFKEF----DSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQP 510 (1426)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhhc----cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHH
Q ss_pred HHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhc
Q 043676 126 VLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLA 200 (446)
Q Consensus 126 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~ 200 (446)
... .+..++..+ .+-+..-.+.....|+.++............++--.+-+.+.+.++..+...+-....+.
T Consensus 511 fa~--~l~giLD~l-~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i 582 (1426)
T PF14631_consen 511 FAT--FLKGILDYL-DNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMI 582 (1426)
T ss_dssp THH--HHHGGGGGG-GG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHH
No 421
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=30.63 E-value=80 Score=24.31 Aligned_cols=36 Identities=11% Similarity=0.125 Sum_probs=27.2
Q ss_pred HHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043676 391 QFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWC 426 (446)
Q Consensus 391 ~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 426 (446)
........-+.+..++.++++++|+.|.++|-.|-.
T Consensus 11 ~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~ 46 (141)
T PF07539_consen 11 SLYRSDELYDALLRLLSSRDPEVQKLALDCLLTWKD 46 (141)
T ss_pred HHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 344444455667889999999999999999887754
No 422
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=30.55 E-value=2.5e+02 Score=21.57 Aligned_cols=105 Identities=11% Similarity=0.134 Sum_probs=63.2
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCC
Q 043676 304 IVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTI 383 (446)
Q Consensus 304 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 383 (446)
+++-|......+++.|..||.+ .... ..+.+.+++-++.++-..+......+..+++.......
T Consensus 13 ~L~~L~aS~qSi~kaa~fAlk~--~~~~---------edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~----- 76 (139)
T PF12243_consen 13 LLRRLNASQQSIQKAAQFALKN--RDME---------EDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKK----- 76 (139)
T ss_pred HHHHcchhHHHHHHHHHHHHHc--cccH---------HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhccc-----
Confidence 3334444455677888888887 2212 22466677788888888888889999988776666431
Q ss_pred CccchHHHHHHHhChHHHHHHhhcCCCH--HHHHHHHHHHHHhcC
Q 043676 384 GDVNQYAQFVEEAGGLEKIENLQSHDNN--EIHEKSVKIFKTYWC 426 (446)
Q Consensus 384 ~~~~~~~~~l~~~~~~~~l~~l~~~~~~--~v~~~a~~~l~~~~~ 426 (446)
...+|...++ ......+......++. .-...+.++|+.+-.
T Consensus 77 -~~~~Yv~~l~-~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~~ 119 (139)
T PF12243_consen 77 -YNYPYVSMLQ-RDLPRIVDAVAPPDNSGAANLKSVRKVLKNWSK 119 (139)
T ss_pred -ccchhHHHHH-HHHHHHHHHhCCCCCccchHHHHHHHHHHHHHH
Confidence 1344666664 3334444444444443 224566677776643
No 423
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=30.45 E-value=82 Score=29.87 Aligned_cols=71 Identities=20% Similarity=0.245 Sum_probs=50.4
Q ss_pred CcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHh
Q 043676 214 GVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNIT 285 (446)
Q Consensus 214 ~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~ 285 (446)
.....+-.+..+.+++++..|..++++++.+....+..+-...+-..++..+..+ .+++-+.++.++..+.
T Consensus 328 ~~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~-~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 328 DMLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTP-EPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccc-ccccchhhhHHHHHhh
Confidence 3344455555668889999999999999987655443333445556677888777 7788888888887764
No 424
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=29.81 E-value=2.2e+02 Score=20.67 Aligned_cols=87 Identities=7% Similarity=0.062 Sum_probs=50.4
Q ss_pred cchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh
Q 043676 143 AKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVEL 222 (446)
Q Consensus 143 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~l 222 (446)
..+.+..-..|++.+... ...++..+...+....+.-+-.++..+-.++.+............+.+.+...
T Consensus 17 S~~~I~~lt~~a~~~~~~---------a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~ 87 (114)
T cd03562 17 SQPSIQTLTKLAIENRKH---------AKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDA 87 (114)
T ss_pred cHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 344555555566655422 24566666677776666777777777777776654444444444445555555
Q ss_pred cCCCCccchhHHHHHH
Q 043676 223 LGHPSPSVLTPALRTV 238 (446)
Q Consensus 223 l~~~~~~~~~~a~~~l 238 (446)
....++.++......+
T Consensus 88 ~~~~~~~~r~kl~rl~ 103 (114)
T cd03562 88 YEKVDEKTRKKLERLL 103 (114)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 5555555555444443
No 425
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.28 E-value=86 Score=28.21 Aligned_cols=62 Identities=10% Similarity=0.017 Sum_probs=49.5
Q ss_pred HHHHHHHhhcCCchhhHHHHhcCChHHHHHHh--ccCchHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 043676 234 ALRTVGNIVTGDDFQTQCIINHGAVPYLLDML--VHNHEEIIKKEISWIISNITAGNREQIQAVI 296 (446)
Q Consensus 234 a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 296 (446)
..+.++++++..+...+.+-+.++++.+++-- .+. ++-+++.+..++.++...+.++...+.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~-nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDW-NPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCC-ChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 56689999998888888888889988877654 444 889999999999999887766655443
No 426
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=28.19 E-value=1.4e+02 Score=26.44 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=41.5
Q ss_pred cCChHHHHHHhccCchHHHHHHHHHHHHHHhcCC-------H-------HHHHHHHHcCChHHHHHHHhc
Q 043676 255 HGAVPYLLDMLVHNHEEIIKKEISWIISNITAGN-------R-------EQIQAVIDAGLIRPIVNLLQN 310 (446)
Q Consensus 255 ~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~-------~-------~~~~~~~~~~~i~~L~~ll~~ 310 (446)
...+..+++-|.+. +...|..|+.+|..++.|. . .+...+.+.|+++.+..+++.
T Consensus 59 ~~~i~~ll~~L~~~-~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 59 KDFIEKLLDQLESS-DSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34677888888888 8888999999999998642 1 233346678999999998864
No 427
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=28.19 E-value=5e+02 Score=24.25 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=43.6
Q ss_pred hhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCC-ccchhHHHHHHHHhhcC
Q 043676 170 VRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPS-PSVLTPALRTVGNIVTG 244 (446)
Q Consensus 170 ~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~~~~a~~~l~~l~~~ 244 (446)
...++-.|+.++.++|+.-|...-.+|.++...-.. ...++..++-..+.+.+.... ..-....+.+++.+..+
T Consensus 175 d~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~-~r~firk~iNNif~~FIyEte~hnGIaELLEIlgSiIng 249 (457)
T KOG2085|consen 175 DQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLV-HRPFIRKSINNIFLRFIYETERHNGIAELLEILGSIING 249 (457)
T ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhh-hHHHHHHhhcchhhhhcccccccCCHHHHHHHHHHhcCc
Confidence 367788899999999999998887777776542221 112233233334444444322 22345566667666654
No 428
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=28.15 E-value=2.1e+02 Score=19.98 Aligned_cols=57 Identities=16% Similarity=0.022 Sum_probs=38.8
Q ss_pred cchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC--CHhHHHHHHHHHHHh
Q 043676 143 AKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSN--DEDVLTYACWSLSYL 199 (446)
Q Consensus 143 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~~~~~l~~l 199 (446)
.+..+++.|+..|..++.............+...+.+.+.++ ......-|+..|..+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 356789999999999988764444444456667777777654 455666676666665
No 429
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=27.06 E-value=3.3e+02 Score=21.82 Aligned_cols=154 Identities=10% Similarity=0.097 Sum_probs=82.2
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHH
Q 043676 259 PYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHL 338 (446)
Q Consensus 259 ~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l 338 (446)
+.++..|+.. .++......|+.+.+.-...+ ...+.|..+.|.+.+-+.+..--..|......+...-..+....+
T Consensus 6 plLIsCL~~q---~~k~s~~KiL~~iVs~Va~~v-~~~~~~~W~eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~efl~~~ 81 (174)
T PF04510_consen 6 PLLISCLTMQ---ETKESDFKILRRIVSHVAYEV-FDLQEGGWDELSDCILSLSENEPVKAFHIFICLPMPLYGEFLIPF 81 (174)
T ss_pred HHHHHHHHhh---cccHhHHHHHHHHHHHHHHHH-HhcCCCCchhHHHHHHHhhccchHHHHHHHHhCCchhhhhHHHHH
Confidence 5567777654 344445555555544211111 112456777777777654444346777777777632245555555
Q ss_pred HHcCChHHHHhcccCCC-HHHHHH--HH-HHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCH-HH
Q 043676 339 VREGCVKPLCDLLLCSD-PEIVTV--CL-IGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNN-EI 413 (446)
Q Consensus 339 ~~~~~i~~L~~ll~~~~-~~~~~~--~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~-~v 413 (446)
++. ..+.+.+.|..+. .++... |+ .++...+..-+.... .+ ..+.+... .++.+.++.+.+.+ ..
T Consensus 82 ~~~-L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~-------~~-~vk~L~~~-mv~Sv~elV~~g~E~~~ 151 (174)
T PF04510_consen 82 MEN-LLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMR-------VD-LVKELLPK-MVKSVKELVERGMEVGF 151 (174)
T ss_pred HHH-HHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccH-------HH-HHHHHHHH-HHHHHHHHHHcccHHHH
Confidence 554 6777777776553 333322 22 333333333332210 11 12222222 56778888888887 77
Q ss_pred HHHHHHHHHHhcC
Q 043676 414 HEKSVKIFKTYWC 426 (446)
Q Consensus 414 ~~~a~~~l~~~~~ 426 (446)
..+|..-+++++.
T Consensus 152 l~rgl~~~e~~v~ 164 (174)
T PF04510_consen 152 LRRGLRDFESFVS 164 (174)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776653
No 430
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=26.40 E-value=3.4e+02 Score=21.73 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=49.1
Q ss_pred cchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 043676 229 SVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLL 308 (446)
Q Consensus 229 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll 308 (446)
++|..|..++..+......... +. .+++.+..-|.+ +.+++.-+...+.+++...|.....-++ .+++++-..+
T Consensus 42 elRK~ayE~lytlLd~~~~~~~-~~--~~~~~v~~GL~D--~~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l~~~L 115 (169)
T PF08623_consen 42 ELRKAAYECLYTLLDTCLSRID-IS--EFLDRVEAGLKD--EHDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPLRKTL 115 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCSSS--HH--HHHHHHHHTTSS---HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-HH--HHHHHHHhhcCC--cHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHh
Confidence 6899999999998664443332 11 235666677754 6789999999999998766654433322 5666666666
Q ss_pred h
Q 043676 309 Q 309 (446)
Q Consensus 309 ~ 309 (446)
.
T Consensus 116 ~ 116 (169)
T PF08623_consen 116 S 116 (169)
T ss_dssp H
T ss_pred h
Confidence 4
No 431
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=26.30 E-value=4.8e+02 Score=23.44 Aligned_cols=147 Identities=13% Similarity=0.135 Sum_probs=89.4
Q ss_pred CccchhHHHHHHHHhhcCCchhhHHHHhc-----------CChHHHHHHhc------cCchHHHHHHHHHHHHHHhcCCH
Q 043676 227 SPSVLTPALRTVGNIVTGDDFQTQCIINH-----------GAVPYLLDMLV------HNHEEIIKKEISWIISNITAGNR 289 (446)
Q Consensus 227 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-----------~~~~~l~~~l~------~~~~~~v~~~a~~~l~~l~~~~~ 289 (446)
...+|..|+.++.....++++.+..+++. .....+...|- +. ++.-...|+.++..+..+++
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~-dpy~~wfAa~il~hll~dn~ 129 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSL-DPYRCWFAAVILMHLLRDNP 129 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS--HHHHHHHHHHHHHHHTT-H
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccC-CHHHHHHHHHHHHHHHhcCH
Confidence 44688999999999999888877777632 11223555444 22 44445678889999988877
Q ss_pred HHHHHHHHc--C----------ChHHHHHHHhc-----CCcchHHHHHHHHHHhccCCCHHHHHHHHHcC-ChHHHHhcc
Q 043676 290 EQIQAVIDA--G----------LIRPIVNLLQN-----AEFDTKKEAAWAISNATSGGTQEQIKHLVREG-CVKPLCDLL 351 (446)
Q Consensus 290 ~~~~~~~~~--~----------~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~-~i~~L~~ll 351 (446)
+.+..+.+- | .++.+..++.. .++.++..-+..|+.... .++.....+..++ .++.|++..
T Consensus 130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~-e~p~AV~~FL~~~s~l~~Li~~~ 208 (312)
T PF04869_consen 130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLF-ECPDAVNDFLSEGSNLQSLIEFS 208 (312)
T ss_dssp HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHT-T-HHHHHHHHCSTTHHHHHHHHH
T ss_pred HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHh-CCHHHHHHHHcCcchHHHHHHHh
Confidence 776655432 1 25555555543 356666666666665554 3678888877765 588888875
Q ss_pred c---CCCHHHHHHHHHHHHHHHHhhhh
Q 043676 352 L---CSDPEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 352 ~---~~~~~~~~~~~~~l~~l~~~~~~ 375 (446)
. +.+.-++-.|.-.|.-++.+..+
T Consensus 209 ~~~~~~~~~VqGL~A~LLGicyef~~~ 235 (312)
T PF04869_consen 209 NQSSSEDVLVQGLCAFLLGICYEFSTK 235 (312)
T ss_dssp S--TCCCHHHHHHHHHHHHHHHHT-S-
T ss_pred hcCCCCcchHHHHHHHHHHHHHHhcCC
Confidence 3 23455666677777777776543
No 432
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=25.73 E-value=4.1e+02 Score=22.48 Aligned_cols=129 Identities=16% Similarity=0.144 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCC-------------C-----HHHHHHHHHHHHHhhCCChH
Q 043676 60 PQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSP-------------S-----DDVREQAVWALGNVAGDSPR 121 (446)
Q Consensus 60 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~-------------~-----~~v~~~a~~~l~~l~~~~~~ 121 (446)
......++..+..+.. .++....+.+.+.++.+...|..- + ..+-..-...|+.++.. +.
T Consensus 78 ~~y~~vGc~L~~~Ll~-~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~-~~ 155 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLS-SPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSST-PN 155 (226)
T ss_pred hHHHHHHHHHHHHHHc-CcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCC-hh
Confidence 4455566667777777 677777777888888888877532 1 12233344567777744 44
Q ss_pred HHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhc
Q 043676 122 CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLA 200 (446)
Q Consensus 122 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~ 200 (446)
....+-+.++...+..+........+... .+.++=-. .....=..+-..|.+++..+|..|...|+.+.
T Consensus 156 Gl~lLe~~~if~~l~~i~~~~~~~~l~kl---il~~LDY~-------~~~~~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 156 GLKLLERWNIFTMLYHIFSLSSRDDLLKL---ILSSLDYS-------VDGHPRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHHCCHHHHHHHHHccCchHHHHHH---HHhhCCCC-------CccHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 45667777888888888844333333222 33333111 11112234556778888999999988887764
No 433
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=25.51 E-value=3.4e+02 Score=21.69 Aligned_cols=76 Identities=14% Similarity=0.133 Sum_probs=51.1
Q ss_pred chhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc
Q 043676 144 KLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELL 223 (446)
Q Consensus 144 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll 223 (446)
..++|..|..+++.+....... .....++..+..-+.+ +.+++..+...+..++...+.....-++ .+++.+-..+
T Consensus 40 GLelRK~ayE~lytlLd~~~~~--~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l~~~L 115 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSR--IDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPLRKTL 115 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSS--S-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHh
Confidence 3579999999999997764222 2245667777777877 8999999999999998877754432222 4555554444
No 434
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.43 E-value=6.7e+02 Score=28.19 Aligned_cols=184 Identities=11% Similarity=0.071 Sum_probs=107.6
Q ss_pred HHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH-HHHHhcCChHHHHHhhCC----CCHHHHHHHHHH---
Q 043676 40 KVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT-NVVIDHGAVPIFVKLLSS----PSDDVREQAVWA--- 111 (446)
Q Consensus 40 ~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~~L~~----~~~~v~~~a~~~--- 111 (446)
...+.|.+..+..-+.+.+ +.++..|.+++..... .-+.+ ......-.+-.++.+.+. +++++-......
T Consensus 1434 ~fvs~~lLa~~F~~lSS~D-~~mr~la~~~lqi~~d-HLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~A~ 1511 (1758)
T KOG1791|consen 1434 IFVSRGLLALLFKGLSSDD-PSMRKLAYWVLQIFLD-HLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFIAF 1511 (1758)
T ss_pred hhhhcccHHHHhhhhccCC-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHHHH
Confidence 6677888999999999999 8999999988877766 33332 333333334555555543 334433222222
Q ss_pred HHHhhCCChH-H---------HHHHHHcCChHHHHHHhccccch---hHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHH
Q 043676 112 LGNVAGDSPR-C---------RDLVLSQGALIPLLAELNEHAKL---SMLRNATRTLSNFCRGKPEPPFDQVRPALPALA 178 (446)
Q Consensus 112 l~~l~~~~~~-~---------~~~~~~~~~i~~l~~~l~~~~~~---~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~ 178 (446)
..+++..... . ....++...+|.+-+.+ .+..+ ..+.-....++......+........+....+.
T Consensus 1512 ~~~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ff-ySs~~e~~t~R~Wvl~LV~~glks~~D~ql~~~~~~~~~~l 1590 (1758)
T KOG1791|consen 1512 FSDILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFF-YSSVFEHHTEREWVLELVSKGLKSCPDYQLLQIRNIFETLL 1590 (1758)
T ss_pred HHHHHcCCccccchhHHHHHHhhhhcccCCCccHHHHH-HhccccccchhhhhHHHHHHHhcCchhhhHHhhcCcceEee
Confidence 2233322211 0 11223334455555555 22222 234444444554445545555556667777777
Q ss_pred HhhcCC--CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC
Q 043676 179 QLVHSN--DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHP 226 (446)
Q Consensus 179 ~ll~~~--~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~ 226 (446)
....+. +...+...+.++++-+.-.......+...|+...+..++.+.
T Consensus 1591 sf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~ 1640 (1758)
T KOG1791|consen 1591 SFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSS 1640 (1758)
T ss_pred hhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhcccc
Confidence 777764 566777888888887776555555556678888888888774
No 435
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=25.21 E-value=5.4e+02 Score=23.62 Aligned_cols=139 Identities=10% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHH-hccCchHH----HHHHHHHH
Q 043676 207 IQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDM-LVHNHEEI----IKKEISWI 280 (446)
Q Consensus 207 ~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~----v~~~a~~~ 280 (446)
.+.+.+.++++.+..+-.. ..+.++..++..+.++....... .+....+..++.++ +....... +..+-+..
T Consensus 2 lEyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p--lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~l 79 (353)
T PF10257_consen 2 LEYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP--LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVEL 79 (353)
T ss_pred hHHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc--cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHH
Q ss_pred HHHHhc---CCHHHHHHHHHcC--------------------------ChHHHHHHHhcCCcchHHHHHHHHHHhccCC-
Q 043676 281 ISNITA---GNREQIQAVIDAG--------------------------LIRPIVNLLQNAEFDTKKEAAWAISNATSGG- 330 (446)
Q Consensus 281 l~~l~~---~~~~~~~~~~~~~--------------------------~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~- 330 (446)
+..+|. .+|.....+.+.+ ++..|+..+.++ ..+-..|..+|.-+..-.
T Consensus 80 L~~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~l~~ 158 (353)
T PF10257_consen 80 LNTLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMSLAS 158 (353)
T ss_pred HHHHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHhCCC
Q ss_pred -CHHHHHHHHHcCChHHHH
Q 043676 331 -TQEQIKHLVREGCVKPLC 348 (446)
Q Consensus 331 -~~~~~~~l~~~~~i~~L~ 348 (446)
++....++++..-+..++
T Consensus 159 ~~~~~~~~i~~~S~fc~~l 177 (353)
T PF10257_consen 159 EDPALAQYIVEHSDFCPVL 177 (353)
T ss_pred CCcHHHHHHHHcchhHHHH
No 436
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=24.96 E-value=4.3e+02 Score=22.39 Aligned_cols=129 Identities=12% Similarity=0.045 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccc------c-----------chhHHHHHHHHHHHhhcCCCC
Q 043676 102 DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEH------A-----------KLSMLRNATRTLSNFCRGKPE 164 (446)
Q Consensus 102 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~------~-----------~~~~~~~a~~~L~~l~~~~~~ 164 (446)
.......+..+..+....+ ........+.++.+...|.+. . +..+-..-...++.++.+...
T Consensus 78 ~~y~~vGc~L~~~Ll~~~e-G~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~G 156 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPE-GIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNG 156 (226)
T ss_pred hHHHHHHHHHHHHHHcCcH-HHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhH
Confidence 4455566666677765533 334444667777777666332 0 123444555667778777655
Q ss_pred CChhhhhhhHHHHHHhhcCCC-HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhh
Q 043676 165 PPFDQVRPALPALAQLVHSND-EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV 242 (446)
Q Consensus 165 ~~~~~~~~~~~~l~~ll~~~~-~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~ 242 (446)
.......+++..+..+....+ +.+... ++.++=...+...+ ..|-+.|..++..+|..|...|..+.
T Consensus 157 l~lLe~~~if~~l~~i~~~~~~~~l~kl---il~~LDY~~~~~~R--------~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 157 LKLLERWNIFTMLYHIFSLSSRDDLLKL---ILSSLDYSVDGHPR--------IILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHCCHHHHHHHHHccCchHHHHHH---HHhhCCCCCccHHH--------HHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 566666788888888877653 223222 33333222222222 23445677778888888888777664
No 437
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=24.21 E-value=7.1e+02 Score=24.70 Aligned_cols=106 Identities=10% Similarity=-0.031 Sum_probs=69.1
Q ss_pred HHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHH--HHHHHHH
Q 043676 220 VELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNRE--QIQAVID 297 (446)
Q Consensus 220 ~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~--~~~~~~~ 297 (446)
+.-..+-++.+|..+...++..+..-|.. +++-.++...--.|.+. +..+|.....++-.++...+. .+..+.+
T Consensus 281 vsRy~Dv~d~IRv~c~~~L~dwi~lvP~y---f~k~~~lry~GW~LSDn-~~~vRl~v~Kil~~L~s~~p~~d~ir~f~e 356 (740)
T COG5537 281 VSRYIDVDDVIRVLCSMSLRDWIGLVPDY---FRKILGLRYNGWSLSDN-HEGVRLLVSKILLFLCSRIPHTDAIRRFVE 356 (740)
T ss_pred hhhccchhHHHHHHHHHHHHHHHhcchHH---HHhhhcccccccccccc-hHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 33344456777888888887777655553 33334556666667777 889999999999999885433 2223332
Q ss_pred cCChHHHHHHHhcCCcchHHHHHHHHHHhccCC
Q 043676 298 AGLIRPIVNLLQNAEFDTKKEAAWAISNATSGG 330 (446)
Q Consensus 298 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 330 (446)
..-..+++++..+..-||..+...++.+...+
T Consensus 357 -RFk~rILE~~r~D~d~VRi~sik~l~~lr~lg 388 (740)
T COG5537 357 -RFKDRILEFLRTDSDCVRICSIKSLCYLRILG 388 (740)
T ss_pred -HHHHHHHHHHhhccchhhHHHHHHHHHHHHhc
Confidence 34555666666554448888888887775543
No 438
>KOG2312 consensus Predicted transcriptional regulator, contains ARID domain [Transcription]
Probab=23.72 E-value=11 Score=36.43 Aligned_cols=124 Identities=20% Similarity=0.176 Sum_probs=75.5
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC--ChHHHHHHHHcCC
Q 043676 54 LMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGD--SPRCRDLVLSQGA 131 (446)
Q Consensus 54 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~--~~~~~~~~~~~~~ 131 (446)
..+..|..+..+|+...+|++........ ....+-.+.+.+.+++..+.-.++.++.++|.. ++...-.......
T Consensus 43 ~a~~~ws~~~Vqal~s~~nlaqpt~~e~S---~~~~L~t~t~Gi~S~drflimr~lEIl~~lcgrEgN~qvIc~~l~~d~ 119 (847)
T KOG2312|consen 43 VAQPQWSQMQVQALQSNANLAQPTSGESS---LIKQLLTPTRGISSPDRFLIMRALEILPPLCGREGNPQVICQVLSNDA 119 (847)
T ss_pred ecccccchhhhHhhhhhcccCCcchhhhh---HHHHHhhhccCCCCCCceeEeeccccCcccccCCCCceeehhhhchHH
Confidence 34556688999999999999983222221 123355566677778888888899999999943 3332223333344
Q ss_pred hHHHHHHhccccchhHHHHHHHHHHHhhcCC--CCCChhhhhhhHHHHHHhh
Q 043676 132 LIPLLAELNEHAKLSMLRNATRTLSNFCRGK--PEPPFDQVRPALPALAQLV 181 (446)
Q Consensus 132 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~l~~ll 181 (446)
...++..+ .-.|.-+....+.+|+.|+... ....+....+.+..|+.+.
T Consensus 120 y~~iv~~l-tl~Dvllvi~Tle~LyalsemGdvac~~Is~v~klidqLVsl~ 170 (847)
T KOG2312|consen 120 YGFIVQGL-TLADVLLVIQTLEQLYALSEMGDVACVPISNVQKLIDQLVSLS 170 (847)
T ss_pred HHHHHhcc-chhHeehhhhhhhHHhcccccCCccchhhhhhhhhhhhhhccc
Confidence 44455544 3345555666667777666554 2333344456666666554
No 439
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=23.14 E-value=1e+03 Score=26.10 Aligned_cols=70 Identities=24% Similarity=0.277 Sum_probs=41.7
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc------------cccchhHHHHHHHHH
Q 043676 88 GAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN------------EHAKLSMLRNATRTL 155 (446)
Q Consensus 88 ~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~------------~~~~~~~~~~a~~~L 155 (446)
.....++.+|++.+..++..+..+|+++- ....+.+++ .+..++.-.. +.....++....+++
T Consensus 196 ~LFk~ivPlLks~~~~~r~AaVlaLG~~n---~~v~~~Lle--eL~~~i~~~~~e~e~r~~~k~rr~Rrd~LR~ev~hVl 270 (1120)
T PF14228_consen 196 ELFKLIVPLLKSESSSFRDAAVLALGSIN---LNVYRTLLE--ELQSYIEECNSEAESRPKWKRRRRRRDRLRTEVTHVL 270 (1120)
T ss_pred HHHHHHhhhhccCcHHHHHHHHHhcCCCC---HHHHHHHHH--HHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHHH
Confidence 35677788899999999999988887753 223333332 1223332221 012345777777777
Q ss_pred HHhhcCC
Q 043676 156 SNFCRGK 162 (446)
Q Consensus 156 ~~l~~~~ 162 (446)
..++..-
T Consensus 271 ~llAe~l 277 (1120)
T PF14228_consen 271 RLLAEFL 277 (1120)
T ss_pred HHHHhhc
Confidence 7666654
No 440
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=22.25 E-value=1.6e+02 Score=17.26 Aligned_cols=27 Identities=11% Similarity=0.275 Sum_probs=20.5
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHH
Q 043676 397 GGLEKIENLQSHDNNEIHEKSVKIFKT 423 (446)
Q Consensus 397 ~~~~~l~~l~~~~~~~v~~~a~~~l~~ 423 (446)
+.-+.|++++...++..+..|..++.+
T Consensus 17 ~Ar~lL~evl~~~~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 17 GARELLEEVIEEGDEAQRQEARALLAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 344557778888888888889888765
No 441
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=22.16 E-value=94 Score=29.50 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=43.4
Q ss_pred hccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhcc
Q 043676 265 LVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATS 328 (446)
Q Consensus 265 l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 328 (446)
..+. +++++.+|..++++++.+....+..+-+..+-..+++++....+++-+.+..|+.-+..
T Consensus 337 ~a~~-n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 337 CAHK-NPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred hccc-ChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 3445 88999999999999976543333222233345566777777788888888888876654
No 442
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.90 E-value=9.2e+02 Score=27.25 Aligned_cols=137 Identities=15% Similarity=0.050 Sum_probs=78.2
Q ss_pred CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHH
Q 043676 183 SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLL 262 (446)
Q Consensus 183 ~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~ 262 (446)
+....++..++..+..............-..++-..+..++.+.+..+++.|+.+++-+..+....... .-.....
T Consensus 1538 ~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~~~----~k~d~~~ 1613 (1710)
T KOG1851|consen 1538 SSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQFVS----DKRDTTS 1613 (1710)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccccch----Hhhhhhh
Confidence 446777777777666554332211111222355667788888888889999999999988765432211 1122333
Q ss_pred HHhcc-CchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc---CCcchHHHHHHHHHHhcc
Q 043676 263 DMLVH-NHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN---AEFDTKKEAAWAISNATS 328 (446)
Q Consensus 263 ~~l~~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~~l~~ 328 (446)
..... ..+......|+..++.++..-|..... .+|..+..+.+ ....+++.+-.++..+-.
T Consensus 1614 ~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~-----wip~~L~~Ls~fa~e~~~i~~tvkktvseFrr 1678 (1710)
T KOG1851|consen 1614 NILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPL-----WIPKPLMNLSSFARESAAIKQTVKKTVSEFRR 1678 (1710)
T ss_pred hhhhhcchHHHHhhhhHHHHHHHHHhccccchh-----hhHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Confidence 33322 213444456777888887655544332 44555544432 245677777777776643
No 443
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=21.07 E-value=3.9e+02 Score=20.55 Aligned_cols=58 Identities=21% Similarity=0.283 Sum_probs=39.8
Q ss_pred HHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhcc
Q 043676 260 YLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATS 328 (446)
Q Consensus 260 ~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 328 (446)
.+++-|..+ ...+++.|.++|-+ .+..+ .+.+.+++-++.++-..|....+.+-.++.
T Consensus 12 ~~L~~L~aS-~qSi~kaa~fAlk~--~~~~e--------dL~~cIle~le~~~lN~R~nI~~fID~l~e 69 (139)
T PF12243_consen 12 QLLRRLNAS-QQSIQKAAQFALKN--RDMEE--------DLWSCILEQLEKENLNTRINIFYFIDSLCE 69 (139)
T ss_pred HHHHHcchh-HHHHHHHHHHHHHc--cccHH--------HHHHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 344455544 56777778888777 23222 367788888888888888888888777654
No 444
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=20.53 E-value=4.6e+02 Score=21.17 Aligned_cols=74 Identities=15% Similarity=0.177 Sum_probs=48.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHH
Q 043676 5 PALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVV 84 (446)
Q Consensus 5 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 84 (446)
+.+.+...|+++-.+..+...+....... .... ..++.+-.++.+++ .-+|....|+|..++..+++....+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~--~~~~-----~~l~~~~~~~~d~~-~~Vqkav~w~L~~~~~~~~~~v~~~ 179 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKE--TDFD-----LLLEIIERLLHDEE-YFVQKAVGWALREYGKKDPERVIAF 179 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhc--ccHH-----HHHHHHHHhCCCHH-HHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 35566677888888888887777655541 1111 22444444555555 7899999999999998666655444
Q ss_pred Hh
Q 043676 85 ID 86 (446)
Q Consensus 85 ~~ 86 (446)
++
T Consensus 180 l~ 181 (197)
T cd06561 180 LE 181 (197)
T ss_pred HH
Confidence 43
No 445
>PRK09169 hypothetical protein; Validated
Probab=20.41 E-value=1.5e+03 Score=27.05 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=6.4
Q ss_pred chhHHHHHHHHHHH
Q 043676 144 KLSMLRNATRTLSN 157 (446)
Q Consensus 144 ~~~~~~~a~~~L~~ 157 (446)
+++-..+++++|+.
T Consensus 329 ~aQ~vAN~LNALSK 342 (2316)
T PRK09169 329 NAQAVANALNALSK 342 (2316)
T ss_pred CHHHHHHHHHHHhc
Confidence 34444444444443
Done!