Query 043676
Match_columns 446
No_of_seqs 362 out of 2235
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 12:18:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043676.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043676hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 100.0 3.9E-58 1.3E-62 435.9 47.4 435 3-445 58-497 (510)
2 3tpo_A Importin subunit alpha- 100.0 5.5E-57 1.9E-61 430.6 48.3 435 3-445 77-516 (529)
3 4b8j_A Importin subunit alpha- 100.0 8.2E-50 2.8E-54 382.9 50.2 428 3-432 75-502 (528)
4 1wa5_B Importin alpha subunit; 100.0 7.3E-49 2.5E-53 376.1 50.6 433 2-439 87-524 (530)
5 2jdq_A Importin alpha-1 subuni 100.0 7.7E-47 2.6E-51 355.9 46.7 426 4-432 22-449 (450)
6 3ul1_B Importin subunit alpha- 100.0 2.4E-42 8.3E-47 327.6 30.2 370 2-375 100-482 (510)
7 3tpo_A Importin subunit alpha- 100.0 9.4E-42 3.2E-46 325.5 33.2 370 2-375 119-501 (529)
8 3now_A UNC-45 protein, SD10334 100.0 2.2E-39 7.4E-44 313.0 33.3 405 2-427 290-738 (810)
9 1jdh_A Beta-catenin; beta-cate 100.0 1E-38 3.4E-43 306.8 37.2 400 2-424 101-528 (529)
10 3now_A UNC-45 protein, SD10334 100.0 1.3E-39 4.6E-44 314.4 30.0 365 4-376 379-787 (810)
11 1xm9_A Plakophilin 1; armadill 100.0 1.4E-39 4.9E-44 303.8 29.3 365 46-429 3-452 (457)
12 3nmz_A APC variant protein; pr 100.0 1.6E-39 5.4E-44 297.8 28.4 365 2-373 32-452 (458)
13 2z6h_A Catenin beta-1, beta-ca 100.0 6.2E-38 2.1E-42 306.7 39.7 404 2-428 98-529 (644)
14 4b8j_A Importin subunit alpha- 100.0 1.7E-38 5.8E-43 304.4 30.9 369 2-375 117-500 (528)
15 1wa5_B Importin alpha subunit; 100.0 3.4E-38 1.2E-42 302.2 32.5 370 2-375 130-514 (530)
16 1xm9_A Plakophilin 1; armadill 100.0 3.3E-39 1.1E-43 301.3 22.7 363 3-373 3-451 (457)
17 2jdq_A Importin alpha-1 subuni 100.0 2.7E-38 9.3E-43 297.6 28.0 368 2-374 64-446 (450)
18 2z6g_A B-catenin; FULL-length, 100.0 9.1E-37 3.1E-41 302.6 39.9 419 2-443 234-685 (780)
19 3l6x_A Catenin delta-1; cateni 100.0 9.4E-38 3.2E-42 292.0 26.6 366 2-375 48-480 (584)
20 3l6x_A Catenin delta-1; cateni 100.0 3E-37 1E-41 288.6 29.4 369 43-429 46-479 (584)
21 1jdh_A Beta-catenin; beta-cate 100.0 1.7E-36 5.9E-41 291.3 28.8 403 2-426 59-489 (529)
22 3nmz_A APC variant protein; pr 100.0 7.9E-37 2.7E-41 279.9 24.9 325 2-330 70-452 (458)
23 2z6h_A Catenin beta-1, beta-ca 100.0 1.4E-35 4.8E-40 290.1 30.0 403 2-426 56-486 (644)
24 2z6g_A B-catenin; FULL-length, 100.0 7.6E-35 2.6E-39 288.9 29.8 403 2-426 192-622 (780)
25 3nmw_A APC variant protein; AR 100.0 1.8E-31 6.3E-36 237.6 21.7 269 60-331 46-337 (354)
26 3nmw_A APC variant protein; AR 100.0 1.1E-30 3.7E-35 232.7 23.4 275 100-376 44-339 (354)
27 4hxt_A De novo protein OR329; 100.0 3.4E-28 1.2E-32 210.1 23.2 244 1-247 1-245 (252)
28 4hxt_A De novo protein OR329; 100.0 7.8E-28 2.7E-32 207.9 24.1 240 45-287 2-242 (252)
29 4db8_A Armadillo-repeat protei 100.0 4.8E-28 1.6E-32 209.1 19.6 239 2-243 12-251 (252)
30 4db8_A Armadillo-repeat protei 100.0 5.7E-28 2E-32 208.6 19.6 239 45-286 12-251 (252)
31 3opb_A SWI5-dependent HO expre 99.9 1.8E-25 6.2E-30 212.0 26.5 397 4-426 257-728 (778)
32 1xqr_A HSPBP1 protein; armadil 99.9 5.1E-26 1.8E-30 197.1 21.0 237 186-431 54-292 (296)
33 3opb_A SWI5-dependent HO expre 99.9 7.3E-25 2.5E-29 207.8 22.7 358 4-373 298-730 (778)
34 4db6_A Armadillo repeat protei 99.9 5.9E-24 2E-28 177.9 22.2 199 170-370 10-208 (210)
35 4db6_A Armadillo repeat protei 99.9 1.2E-23 4E-28 176.1 20.3 199 43-243 10-209 (210)
36 1xqr_A HSPBP1 protein; armadil 99.9 2.3E-22 8E-27 174.2 22.3 225 60-285 54-286 (296)
37 3tt9_A Plakophilin-2; cell adh 99.9 6E-22 2E-26 163.9 14.0 197 46-244 9-230 (233)
38 3tt9_A Plakophilin-2; cell adh 99.9 6.8E-22 2.3E-26 163.5 12.8 196 3-202 9-230 (233)
39 1b3u_A Protein (protein phosph 99.8 3E-19 1E-23 173.6 23.5 380 4-425 205-586 (588)
40 1b3u_A Protein (protein phosph 99.8 6.7E-19 2.3E-23 171.1 23.8 381 4-427 166-549 (588)
41 4fdd_A Transportin-1; heat rep 99.8 2.3E-19 8E-24 181.5 20.8 353 5-375 93-475 (852)
42 4fdd_A Transportin-1; heat rep 99.8 2.2E-19 7.7E-24 181.6 18.9 397 4-425 176-657 (852)
43 3grl_A General vesicular trans 99.8 1.7E-16 6E-21 146.9 34.8 415 3-431 61-555 (651)
44 2vgl_B AP-2 complex subunit be 99.8 1.1E-16 3.7E-21 154.4 31.3 375 3-427 50-458 (591)
45 3grl_A General vesicular trans 99.8 1.6E-15 5.6E-20 140.5 30.4 368 3-377 22-455 (651)
46 1oyz_A Hypothetical protein YI 99.7 4E-16 1.4E-20 136.3 22.3 259 41-367 19-278 (280)
47 2vgl_B AP-2 complex subunit be 99.7 1.1E-16 3.8E-21 154.4 19.8 330 4-370 123-456 (591)
48 1oyz_A Hypothetical protein YI 99.7 9.7E-16 3.3E-20 133.9 20.8 254 2-324 23-278 (280)
49 1w63_A Adapter-related protein 99.7 7.7E-16 2.6E-20 149.0 21.4 359 4-425 109-489 (618)
50 2bpt_A Importin beta-1 subunit 99.7 6.3E-15 2.2E-19 149.7 25.3 359 4-375 268-672 (861)
51 2bpt_A Importin beta-1 subunit 99.7 3.8E-15 1.3E-19 151.3 23.4 400 4-426 371-811 (861)
52 1qgr_A Protein (importin beta 99.7 3.5E-15 1.2E-19 151.9 22.9 393 4-424 174-677 (876)
53 1ibr_B P95, importin beta-1 su 99.7 1.7E-15 5.8E-20 142.6 16.3 389 4-427 3-438 (462)
54 1w63_A Adapter-related protein 99.6 9.1E-15 3.1E-19 141.5 20.3 326 4-372 144-491 (618)
55 1qgr_A Protein (importin beta 99.6 1.5E-14 5.1E-19 147.3 22.7 406 4-426 368-827 (876)
56 1u6g_C TIP120 protein, CAND1; 99.6 3.4E-14 1.1E-18 149.4 24.4 406 4-426 8-463 (1230)
57 1ibr_B P95, importin beta-1 su 99.6 9.3E-16 3.2E-20 144.3 10.2 357 5-375 38-441 (462)
58 1u6g_C TIP120 protein, CAND1; 99.6 3.9E-14 1.3E-18 148.9 20.9 396 4-424 88-546 (1230)
59 3ltm_A Alpha-REP4; protein eng 99.5 4.4E-13 1.5E-17 111.6 17.4 187 3-246 20-206 (211)
60 3ltj_A Alpharep-4; protein eng 99.5 7.3E-13 2.5E-17 109.3 16.4 184 3-243 15-198 (201)
61 3ltm_A Alpha-REP4; protein eng 99.5 1.5E-12 5.1E-17 108.4 18.1 187 44-287 18-204 (211)
62 3ltj_A Alpharep-4; protein eng 99.5 2.5E-12 8.6E-17 106.1 18.1 184 45-285 14-197 (201)
63 2vgl_A Adaptor protein complex 99.5 4.4E-12 1.5E-16 122.3 21.2 365 4-426 113-509 (621)
64 2vgl_A Adaptor protein complex 99.5 1.7E-10 5.8E-15 111.3 31.0 328 3-372 75-434 (621)
65 2db0_A 253AA long hypothetical 99.3 3E-10 1E-14 86.4 18.5 217 86-328 30-246 (253)
66 3b2a_A TON_1937, putative unch 99.2 1.1E-09 3.8E-14 87.1 15.1 225 171-423 32-258 (265)
67 3tjz_B Coatomer subunit gamma; 99.2 2.2E-09 7.6E-14 94.3 18.8 276 4-324 70-349 (355)
68 4gmo_A Putative uncharacterize 99.1 2.6E-10 8.8E-15 111.5 12.4 198 41-242 31-257 (684)
69 2db0_A 253AA long hypothetical 99.1 1.2E-08 4.1E-13 77.7 18.2 217 129-373 31-248 (253)
70 4ady_A RPN2, 26S proteasome re 99.1 3E-09 1E-13 103.9 19.3 274 4-331 394-679 (963)
71 1ho8_A Vacuolar ATP synthase s 99.0 8.1E-08 2.8E-12 86.3 23.0 322 87-425 76-475 (480)
72 3tjz_B Coatomer subunit gamma; 99.0 6.2E-09 2.1E-13 91.5 15.6 277 45-366 68-348 (355)
73 4gmo_A Putative uncharacterize 99.0 1.8E-09 6.3E-14 105.5 12.2 198 172-372 35-259 (684)
74 4ady_A RPN2, 26S proteasome re 99.0 1.7E-07 5.8E-12 91.8 23.6 271 46-372 393-677 (963)
75 2qk2_A LP04448P; mini spindles 98.9 5.4E-09 1.8E-13 88.7 11.3 185 134-329 19-206 (242)
76 3b2a_A TON_1937, putative unch 98.9 5.1E-08 1.7E-12 77.8 15.3 185 4-202 35-219 (265)
77 2qk2_A LP04448P; mini spindles 98.9 2E-08 6.9E-13 85.1 11.6 185 6-202 19-206 (242)
78 2qk1_A Protein STU2; STU2P, XM 98.9 2.2E-08 7.5E-13 84.7 11.6 192 135-329 21-221 (249)
79 2qk1_A Protein STU2; STU2P, XM 98.7 1E-07 3.4E-12 80.6 12.1 189 50-243 21-220 (249)
80 1ho8_A Vacuolar ATP synthase s 98.7 5.8E-06 2E-10 74.4 22.6 297 12-328 135-476 (480)
81 1wa5_C Importin alpha RE-expor 98.7 9.5E-06 3.2E-10 83.1 25.8 343 6-372 89-526 (960)
82 2iw3_A Elongation factor 3A; a 98.6 4E-06 1.4E-10 83.3 21.0 299 5-327 17-323 (986)
83 1te4_A Conserved protein MTH18 98.6 9.9E-09 3.4E-13 77.7 2.0 120 45-199 12-131 (131)
84 1te4_A Conserved protein MTH18 98.6 1.4E-08 4.7E-13 76.9 2.9 120 213-368 11-130 (131)
85 1wa5_C Importin alpha RE-expor 98.6 1.3E-05 4.6E-10 82.0 25.3 386 5-428 38-527 (960)
86 2x1g_F Cadmus; transport prote 98.4 5.7E-05 2E-09 77.6 24.7 330 17-372 204-616 (971)
87 2x1g_F Cadmus; transport prote 98.4 8.7E-05 3E-09 76.3 24.9 393 14-425 256-721 (971)
88 3dad_A FH1/FH2 domain-containi 98.4 6.8E-06 2.3E-10 70.2 13.5 187 219-415 123-325 (339)
89 2iw3_A Elongation factor 3A; a 98.3 5.2E-05 1.8E-09 75.5 20.9 299 50-375 19-328 (986)
90 4hat_C Exportin-1; heat repeat 98.3 0.00033 1.1E-08 71.4 26.7 341 13-375 206-622 (1023)
91 3dad_A FH1/FH2 domain-containi 98.3 3.8E-05 1.3E-09 65.7 15.5 187 174-361 120-326 (339)
92 2x19_B Importin-13; nuclear tr 98.2 0.00055 1.9E-08 70.3 26.2 348 5-372 244-650 (963)
93 3m1i_C Exportin-1; heat repeat 98.2 0.0012 4E-08 68.4 27.8 345 14-374 207-621 (1049)
94 3m1i_C Exportin-1; heat repeat 98.2 0.002 6.7E-08 66.7 28.9 354 4-375 140-573 (1049)
95 4hat_C Exportin-1; heat repeat 98.1 0.001 3.5E-08 67.9 25.0 315 46-375 195-573 (1023)
96 2x19_B Importin-13; nuclear tr 98.1 0.0011 3.9E-08 68.0 25.9 339 55-427 459-847 (963)
97 3ibv_A Exportin-T; karyopherin 97.9 8.2E-05 2.8E-09 75.6 11.7 304 13-330 204-568 (980)
98 3ibv_A Exportin-T; karyopherin 97.8 0.00065 2.2E-08 69.1 17.0 308 57-376 205-571 (980)
99 4ffb_C Protein STU2; tubulin f 97.8 0.0011 3.6E-08 57.1 15.7 191 219-429 14-215 (278)
100 2of3_A ZYG-9; multifunctional 97.7 0.0012 4.2E-08 55.2 14.3 183 176-375 50-240 (266)
101 4ffb_C Protein STU2; tubulin f 97.5 0.0011 3.8E-08 57.0 12.4 187 135-330 14-214 (278)
102 2of3_A ZYG-9; multifunctional 97.5 0.0028 9.6E-08 53.1 14.3 178 91-286 49-236 (266)
103 3gjx_A Exportin-1; transport, 97.5 0.018 6E-07 58.8 22.5 298 13-330 218-597 (1073)
104 1upk_A MO25 protein; transfera 97.5 0.018 6.1E-07 49.4 18.9 225 171-409 77-313 (341)
105 3gjx_A Exportin-1; transport, 97.5 0.032 1.1E-06 56.9 23.7 311 50-376 211-600 (1073)
106 2fv2_A RCD1 required for cell 97.4 0.0093 3.2E-07 48.7 15.5 194 227-426 14-224 (268)
107 3oc3_A Helicase MOT1, MOT1; re 97.4 0.0012 4.1E-08 60.3 10.4 244 46-324 175-432 (800)
108 3oc3_A Helicase MOT1, MOT1; re 97.3 0.00088 3E-08 61.1 9.3 246 89-367 175-432 (800)
109 1upk_A MO25 protein; transfera 97.3 0.031 1.1E-06 47.9 17.7 201 208-423 72-280 (341)
110 2fv2_A RCD1 required for cell 97.3 0.025 8.6E-07 46.3 16.1 187 185-374 14-227 (268)
111 3u0r_A Apoptosis inhibitor 5; 97.2 0.01 3.6E-07 53.3 14.8 248 100-374 40-301 (507)
112 1lrv_A LRV, leucine-rich repea 97.1 0.00019 6.6E-09 59.7 2.5 64 9-110 57-120 (244)
113 1lrv_A LRV, leucine-rich repea 97.0 0.00034 1.1E-08 58.2 3.4 88 52-194 57-144 (244)
114 3c2g_A SYS-1 protein; beta-cat 97.0 0.1 3.6E-06 44.7 17.6 154 113-268 267-450 (619)
115 2f31_A Diaphanous protein homo 96.9 0.0076 2.6E-07 49.9 10.3 161 246-415 34-217 (233)
116 3u0r_A Apoptosis inhibitor 5; 96.9 0.25 8.7E-06 44.6 22.5 292 57-377 40-364 (507)
117 3l9t_A Putative uncharacterize 96.8 0.069 2.4E-06 43.4 14.4 145 46-212 72-218 (240)
118 3l9t_A Putative uncharacterize 96.4 0.061 2.1E-06 43.6 11.9 143 134-297 74-218 (240)
119 3eg5_B Protein diaphanous homo 96.3 0.022 7.6E-07 50.9 9.7 161 245-414 99-282 (383)
120 3ebb_A Phospholipase A2-activa 96.1 0.29 9.9E-06 42.0 15.6 173 47-225 105-287 (304)
121 2bnx_A Diaphanous protein homo 95.9 0.087 3E-06 47.2 11.8 162 246-416 38-222 (386)
122 3ebb_A Phospholipase A2-activa 95.6 0.096 3.3E-06 45.0 10.3 109 50-161 152-264 (304)
123 3a6p_A Exportin-5; exportin-5, 95.3 3.6 0.00012 43.2 24.8 288 15-329 26-381 (1204)
124 3eg5_B Protein diaphanous homo 95.2 1 3.5E-05 40.2 16.2 153 7-162 71-248 (383)
125 2f31_A Diaphanous protein homo 95.2 0.92 3.1E-05 37.3 14.8 154 7-162 5-182 (233)
126 3a6p_A Exportin-5; exportin-5, 95.2 1.9 6.5E-05 45.2 20.3 283 60-372 27-381 (1204)
127 1lsh_A Lipovitellin (LV-1N, LV 94.8 3.2 0.00011 42.7 20.4 160 144-332 408-580 (1056)
128 3c2g_A SYS-1 protein; beta-cat 94.7 0.2 6.8E-06 43.0 9.3 115 65-182 262-377 (619)
129 2bnx_A Diaphanous protein homo 93.2 1.5 5.2E-05 39.2 12.7 133 185-317 71-221 (386)
130 3fga_B Serine/threonine-protei 93.1 4.6 0.00016 36.0 15.8 234 81-328 122-366 (403)
131 1lsh_A Lipovitellin (LV-1N, LV 92.9 2.8 9.7E-05 43.1 15.9 166 90-288 393-578 (1056)
132 3qml_C Protein SLS1, nucleotid 92.8 0.79 2.7E-05 38.7 9.5 133 230-371 44-189 (315)
133 3ldz_A STAM-1, signal transduc 92.5 0.27 9.4E-06 36.6 6.0 75 300-374 43-117 (140)
134 2npp_B PP2A, B subunit, serine 92.3 5.3 0.00018 36.2 14.9 237 80-329 154-400 (449)
135 1x5b_A Signal transducing adap 92.2 0.53 1.8E-05 36.1 7.3 73 343-427 53-126 (163)
136 1vdy_A Hypothetical protein (R 92.1 0.78 2.7E-05 33.9 7.7 79 343-433 50-137 (140)
137 3qml_C Protein SLS1, nucleotid 91.9 1.9 6.5E-05 36.4 10.7 152 171-328 21-189 (315)
138 3g2s_A C-terminal fragment of 91.6 0.37 1.3E-05 36.3 5.7 75 300-374 49-129 (149)
139 3ldz_A STAM-1, signal transduc 91.4 0.5 1.7E-05 35.2 6.3 73 343-427 43-115 (140)
140 3gs3_A Symplekin, LD45768P; he 91.3 5.6 0.00019 33.1 20.5 89 17-116 30-118 (257)
141 1juq_A ADP-ribosylation factor 91.2 0.89 3E-05 35.2 7.7 72 343-426 51-128 (171)
142 1mhq_A ADP-ribosylation factor 91.0 0.88 3E-05 34.2 7.2 73 343-427 39-117 (148)
143 1mhq_A ADP-ribosylation factor 90.6 0.79 2.7E-05 34.5 6.7 73 300-372 39-117 (148)
144 3g2s_A C-terminal fragment of 90.4 0.96 3.3E-05 34.0 7.0 74 343-428 49-128 (149)
145 1x5b_A Signal transducing adap 90.1 0.54 1.8E-05 36.1 5.5 73 300-372 53-126 (163)
146 3o2t_A Symplekin; heat repeat, 90.0 4.8 0.00016 35.7 12.1 108 255-372 62-184 (386)
147 1juq_A ADP-ribosylation factor 88.6 0.86 2.9E-05 35.3 5.7 73 300-372 51-129 (171)
148 3gs3_A Symplekin, LD45768P; he 88.6 9.6 0.00033 31.7 12.8 131 146-285 30-172 (257)
149 3o2t_A Symplekin; heat repeat, 87.3 15 0.00052 32.5 18.8 89 17-116 40-128 (386)
150 2npp_B PP2A, B subunit, serine 84.6 16 0.00055 33.1 12.4 227 4-249 164-405 (449)
151 3zyq_A Hepatocyte growth facto 83.7 1.9 6.4E-05 35.2 5.6 71 344-426 47-118 (226)
152 1dvp_A HRS, hepatocyte growth 82.3 4.4 0.00015 32.8 7.3 71 344-426 44-115 (220)
153 2jak_A Serine/threonine-protei 81.9 18 0.0006 32.1 11.3 191 81-279 167-360 (392)
154 3fga_B Serine/threonine-protei 80.8 30 0.001 30.8 12.5 228 171-429 128-369 (403)
155 1elk_A Target of MYB1; superhe 80.8 5.4 0.00019 30.2 6.9 71 344-426 55-130 (157)
156 3zyq_A Hepatocyte growth facto 80.7 0.79 2.7E-05 37.4 2.3 73 3-75 46-118 (226)
157 1elk_A Target of MYB1; superhe 75.8 5.9 0.0002 30.0 5.7 73 300-372 54-131 (157)
158 1dvp_A HRS, hepatocyte growth 74.7 1.8 6.1E-05 35.2 2.8 73 3-75 43-115 (220)
159 1vsy_5 Proteasome activator BL 70.4 27 0.00093 35.6 10.6 216 132-372 135-366 (997)
160 1vsy_5 Proteasome activator BL 69.6 18 0.00062 36.9 9.1 186 90-286 135-365 (997)
161 1vdy_A Hypothetical protein (R 67.4 11 0.00037 27.8 5.2 74 300-373 50-132 (140)
162 3ut4_A CTHE_2751, putative unc 65.6 15 0.00052 26.7 5.6 95 300-427 32-131 (134)
163 3rru_A TOM1L1 protein; structu 59.3 21 0.00073 26.7 5.7 75 344-430 55-134 (152)
164 3s4w_B Protein FACD2, fanconi 58.7 86 0.003 32.9 11.6 307 3-327 193-548 (1323)
165 3pst_A Protein DOA1; protein d 57.7 22 0.00074 31.9 6.3 131 63-204 243-392 (425)
166 3gae_A Protein DOA1; UFD3, CDC 57.6 37 0.0013 28.1 7.5 130 63-202 71-218 (253)
167 3pst_A Protein DOA1; protein d 57.1 27 0.00093 31.3 6.8 107 11-123 271-395 (425)
168 3l3f_X Protein DOA1, DOA1/UFD3 54.4 18 0.0006 31.8 5.1 131 63-204 180-329 (362)
169 3l3f_X Protein DOA1, DOA1/UFD3 50.9 28 0.00096 30.5 5.8 106 11-122 208-331 (362)
170 3vld_A DNA mismatch repair pro 50.7 1.5E+02 0.0051 27.1 13.2 115 38-161 109-226 (500)
171 3rru_A TOM1L1 protein; structu 48.9 35 0.0012 25.6 5.4 74 300-373 54-132 (152)
172 2b6c_A Hypothetical protein EF 48.6 1E+02 0.0035 24.6 10.2 134 141-297 65-199 (220)
173 1w9c_A CRM1 protein, exportin 46.5 1.4E+02 0.0048 25.6 14.3 179 230-426 45-245 (321)
174 3gae_A Protein DOA1; UFD3, CDC 46.4 20 0.00068 29.7 4.1 103 55-162 100-219 (253)
175 1wjt_A Transcription elongatio 42.6 46 0.0016 22.9 4.8 37 390-426 47-84 (103)
176 2jak_A Serine/threonine-protei 41.4 1.9E+02 0.0065 25.7 12.1 186 170-366 172-362 (392)
177 2xpp_A IWS1, ECU08_0440; trans 40.5 1.1E+02 0.0036 22.7 6.7 81 202-286 49-136 (145)
178 3jxy_A Alkylpurine DNA glycosy 35.5 1.7E+02 0.006 23.5 8.9 135 141-298 71-207 (232)
179 2b6c_A Hypothetical protein EF 31.2 2E+02 0.0068 22.9 12.6 140 175-340 58-199 (220)
180 1vsy_4 Proteasome activator BL 28.7 3.7E+02 0.013 26.7 10.4 101 141-243 349-455 (799)
181 3vld_A DNA mismatch repair pro 28.1 3.5E+02 0.012 24.8 15.4 105 4-116 118-224 (500)
182 1vsy_4 Proteasome activator BL 27.6 3.2E+02 0.011 27.1 9.8 120 80-201 332-455 (799)
183 4atg_A TAF6; transcription, TF 26.3 1.2E+02 0.004 23.9 5.3 112 87-199 39-160 (196)
184 3jxy_A Alkylpurine DNA glycosy 26.2 2.5E+02 0.0087 22.5 10.7 140 175-341 64-207 (232)
185 3ut4_A CTHE_2751, putative unc 22.6 2.2E+02 0.0077 20.6 6.7 94 257-371 32-130 (134)
186 2g7o_A Protein TRAM; four heli 21.3 94 0.0032 19.5 3.0 20 411-430 50-69 (70)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=3.9e-58 Score=435.90 Aligned_cols=435 Identities=46% Similarity=0.787 Sum_probs=389.3
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
.++.+++.++|+|+..|+.|+..++++++.+++++.+.+++.|++|.|+++|++++.+.+|..|+|+|+|++.++++.+.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 47899999999999999999999999999887889999999999999999998766589999999999999998999999
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcccc----chhHHHHHHHHHHHh
Q 043676 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA----KLSMLRNATRTLSNF 158 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~l 158 (446)
.+++.|+++.|+.+|.++++++++.|+|+|+||+.+.+.++..+.+.|++++++.++.... ...+++.++|++.++
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999995322 235788999999999
Q ss_pred hcCC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHH
Q 043676 159 CRGK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRT 237 (446)
Q Consensus 159 ~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~ 237 (446)
+.+. +........+++|.|+.++.+++++++..++++|.+++....+....+.+.|+++.|+.++.+++..++..++++
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a 297 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence 9987 556666778999999999999999999999999999999988888888899999999999999999999999999
Q ss_pred HHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHH
Q 043676 238 VGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKK 317 (446)
Q Consensus 238 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~ 317 (446)
++|++.+++.....+++.|+++.++.++.++ +..+++.|+|+|+|++.+++..+..+.+.|+++.|+.++.+++.++++
T Consensus 298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 376 (510)
T 3ul1_B 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK 376 (510)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred HHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHH
Confidence 9999999999999999999999999999998 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhC
Q 043676 318 EAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAG 397 (446)
Q Consensus 318 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 397 (446)
.|+++|+|++..++.+++..+.+.|+++.|+++|+++|++++..++++|.++++.+++.. ..+.+...|.++|
T Consensus 377 ~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee~g 449 (510)
T 3ul1_B 377 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEECG 449 (510)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------chHHHHHHHHHcC
Confidence 999999999998889999999999999999999999999999999999999999877642 4566889999999
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCcccccccccccCCcc
Q 043676 398 GLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEEEDALGSNVITNGKV 445 (446)
Q Consensus 398 ~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 445 (446)
|+++|+.|++|+|++|+++|.++|++||.++||+++++.|....+||-
T Consensus 450 gl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~~~~~ 497 (510)
T 3ul1_B 450 GLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSEGFA 497 (510)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHCC-------------------
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCCccccc
Confidence 999999999999999999999999999999999998888887776653
No 2
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=5.5e-57 Score=430.64 Aligned_cols=435 Identities=46% Similarity=0.780 Sum_probs=388.8
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
.++.+++.++|+|+..+..|+..++++++.+.+++.+.+++.|++|.|+++|..++++.++..|+|+|+|++.++++.+.
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 57899999999999999999999999998877888999999999999999998766589999999999999998999999
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcccc----chhHHHHHHHHHHHh
Q 043676 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA----KLSMLRNATRTLSNF 158 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~l 158 (446)
.+++.|+++.|+.+|.++++.+++.|+|+|+||+.+++.++..+.+.|++++++.++.... ...+++.++|+++++
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999995322 235788999999999
Q ss_pred hcCC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHH
Q 043676 159 CRGK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRT 237 (446)
Q Consensus 159 ~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~ 237 (446)
+.+. +........+++|.|+.++.+++++++..++++|.+++....+....+.+.|+++.|+.++.+++..++..++.+
T Consensus 237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~a 316 (529)
T 3tpo_A 237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 316 (529)
T ss_dssp HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHH
Confidence 9987 566666778999999999999999999999999999999988888888899999999999999999999999999
Q ss_pred HHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHH
Q 043676 238 VGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKK 317 (446)
Q Consensus 238 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~ 317 (446)
++|++.+++.....+++.|+++.|+.++.++ +..++..|+|+|+|++.+++.....+++.|+++.|+.++.+++.+++.
T Consensus 317 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 395 (529)
T 3tpo_A 317 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK 395 (529)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHH
Confidence 9999999999999999999999999999998 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhC
Q 043676 318 EAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAG 397 (446)
Q Consensus 318 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 397 (446)
.|+|+|+|++..+++++...+.+.|+++.|+++|+++|++++..++++|.++++.++... ..+.+...+.++|
T Consensus 396 ~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee~g 468 (529)
T 3tpo_A 396 AAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEECG 468 (529)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------ChHHHHHHHHHCC
Confidence 999999999988889999999999999999999999999999999999999999877642 4566889999999
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCcccccccccccCCcc
Q 043676 398 GLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEEEDALGSNVITNGKV 445 (446)
Q Consensus 398 ~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 445 (446)
|+++|+.|++|+|++|+++|..+|++||.++|++++.+.|.+..+||.
T Consensus 469 gl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~~~~~ 516 (529)
T 3tpo_A 469 GLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSEGFA 516 (529)
T ss_dssp CHHHHTGGGGCSSHHHHHHHHHHHHHHC--------------------
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCCCcccc
Confidence 999999999999999999999999999999999998899988777764
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=8.2e-50 Score=382.94 Aligned_cols=428 Identities=76% Similarity=1.203 Sum_probs=391.4
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
.+|.|++.|.++++.++..|++.|+++++....+....+++.|++|.|+++|.+++++.++..|+++|++++.++++.+.
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 58999999999999999999999999988764577889999999999999999876589999999999999998899999
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK 162 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 162 (446)
.+++.|+++.|+.+|.++++.+++.|+|+|++++.+.+.++..+...|+++.++.++..+.++.++..++|+|.+++...
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999888899999999999999999976778999999999999999987
Q ss_pred CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhh
Q 043676 163 PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV 242 (446)
Q Consensus 163 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~ 242 (446)
+........+++|.|+.++.++++.++..++++|++++...+...+.+.+.|+++.|+.++.++++.++..|+++|++++
T Consensus 235 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~ 314 (528)
T 4b8j_A 235 PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 314 (528)
T ss_dssp SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 77777778999999999999999999999999999999988888788899999999999999999999999999999999
Q ss_pred cCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHH
Q 043676 243 TGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWA 322 (446)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 322 (446)
.+++.....+++.|+++.|+.+|.++.++.++..|+|+|+|++.+++..+..+++.|+++.|+.++.++++.++..|+++
T Consensus 315 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~a 394 (528)
T 4b8j_A 315 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWA 394 (528)
T ss_dssp TSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 98888888899999999999999876578999999999999998888888999999999999999999999999999999
Q ss_pred HHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHH
Q 043676 323 ISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKI 402 (446)
Q Consensus 323 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 402 (446)
|++++..++++....+.+.|+++.|+.++.+++++++..++++|.+++...+....... ...+++...+.+.|+++.+
T Consensus 395 L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~l 472 (528)
T 4b8j_A 395 ISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLEKI 472 (528)
T ss_dssp HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT--CSCCHHHHHHHHTTHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc--ccccHHHHHHHHCCcHHHH
Confidence 99999887789999999999999999999999999999999999999998776432111 1356689999999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhcCCCCCcc
Q 043676 403 ENLQSHDNNEIHEKSVKIFKTYWCGRNEEE 432 (446)
Q Consensus 403 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 432 (446)
..+++++++++++.|.+++++||+.+++++
T Consensus 473 ~~L~~~~~~~v~~~a~~il~~~~~~e~~~~ 502 (528)
T 4b8j_A 473 ENLQSHDNNEIYEKAVKILEAYWMDEEDDT 502 (528)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHCC------
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCccccc
Confidence 999999999999999999999998766543
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=7.3e-49 Score=376.14 Aligned_cols=433 Identities=53% Similarity=0.821 Sum_probs=387.9
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC-CChHHHHHHHHHHHHHcCCChhh
Q 043676 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRE-DYPQLQYEAAWVLINIASGTSEN 80 (446)
Q Consensus 2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~~~~~ 80 (446)
+.++.+++.|+++++.++..|++.|+++++....+....+++.|++|.|+++|.++ + +.++..|+++|++++.++++.
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~-~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQP-EMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSC-HHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCC-HHHHHHHHHHHHHHhCCCHHH
Confidence 46899999999999999999999999998865456678889999999999999997 6 899999999999999988889
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676 81 TNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR 160 (446)
Q Consensus 81 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 160 (446)
+..+++.|+++.|+.+|.++++.+++.|+|+|++++...+..+..+...|+++.++.++ .+.+..++..++|+|.+++.
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999998888999999999999999999 55889999999999999998
Q ss_pred CC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHH
Q 043676 161 GK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVG 239 (446)
Q Consensus 161 ~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~ 239 (446)
+. +........+++|.|+.++.++++.++..++++|.+++...+.....+.+.|+++.|+.++.++++.++..|+++|+
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 87 66677777899999999999999999999999999999888777788888999999999999999999999999999
Q ss_pred HhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHH
Q 043676 240 NIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEA 319 (446)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 319 (446)
+++.+++.....+++.|+++.++.+|.++ ++.++..|+|+|++++.+++.....+++.|+++.|+.++.++++.++..|
T Consensus 325 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 403 (530)
T 1wa5_B 325 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 403 (530)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 99998888888888999999999999999 89999999999999998888888889999999999999999999999999
Q ss_pred HHHHHHhccCCCH--HHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhC
Q 043676 320 AWAISNATSGGTQ--EQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAG 397 (446)
Q Consensus 320 ~~aL~~l~~~~~~--~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 397 (446)
+++|++++..+.+ +....+.+.|+++.|+.++.+++++++..++++|.+++...+....... ...+++...+.+.|
T Consensus 404 ~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~--~~~~~~~~~l~~~g 481 (530)
T 1wa5_B 404 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARG--LNINENADFIEKAG 481 (530)
T ss_dssp HHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHT--CSSCHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhccc--ccccHHHHHHHHcC
Confidence 9999999987666 7888889999999999999999999999999999999988776421000 13456889999999
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCc-cccccccc
Q 043676 398 GLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEE-EDALGSNV 439 (446)
Q Consensus 398 ~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~-~~~~~~~~ 439 (446)
+++.|..|++++++++++.|..+|++||..+++| ++++.|+.
T Consensus 482 ~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~~~~~~~~~~ 524 (530)
T 1wa5_B 482 GMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAVDETMAPQN 524 (530)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-----------
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHCCccccccccccCCCc
Confidence 9999999999999999999999999999887765 44567753
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=7.7e-47 Score=355.88 Aligned_cols=426 Identities=57% Similarity=0.880 Sum_probs=382.0
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhc-CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQS-GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
+|.+++.++++++.++..|+..|+++++...++....+++. |++|.|++++++++++.++..|+++|.+++..+++...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 78999999999999999999999998774335566777887 99999999999983389999999999999997888888
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK 162 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 162 (446)
.+++.|+++.|+++++++++.+++.|+++|++++...+..+..+.+.|+++.++.++..+.+..++..++|+|++++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 88899999999999999999999999999999999888889999999999999999954578999999999999999876
Q ss_pred -CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHh
Q 043676 163 -PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241 (446)
Q Consensus 163 -~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l 241 (446)
+........+++|.++.++.++++.++..+++++.+++...++....+.+.|+++.|+.++.++++.++..|+++|+++
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 5555556689999999999999999999999999999998777777788889999999999999999999999999999
Q ss_pred hcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHH
Q 043676 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAW 321 (446)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 321 (446)
+.+.+...+.+++.|+++.++.++.++ ++.++..|+++|++++.+++.....+++.|+++.|+.++.+++++++..|++
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~ 340 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAW 340 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 998888777888899999999999998 8999999999999999888888888998999999999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHH
Q 043676 322 AISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEK 401 (446)
Q Consensus 322 aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 401 (446)
+|++++..++++....+.+.|+++.|++++++++++++..++++|.+++..++....... ...+++...+.+.||++.
T Consensus 341 ~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~--~~~~~~~~~l~~~g~~~~ 418 (450)
T 2jdq_A 341 AITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNG--TGINPYCALIEEAYGLDK 418 (450)
T ss_dssp HHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSC--SCCCHHHHHHHHHHCHHH
T ss_pred HHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccc--cchhHHHHHHHHcCcHHH
Confidence 999999876778888888999999999999999999999999999999987765421100 134578999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcCCCCCcc
Q 043676 402 IENLQSHDNNEIHEKSVKIFKTYWCGRNEEE 432 (446)
Q Consensus 402 l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 432 (446)
|..++++++.++++.|..++++||+++++++
T Consensus 419 l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 449 (450)
T 2jdq_A 419 IEFLQSHENQEIYQKAFDLIEHYFGTEDEDS 449 (450)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHCCC----
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCcccccC
Confidence 9999999999999999999999998777654
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=2.4e-42 Score=327.60 Aligned_cols=370 Identities=25% Similarity=0.387 Sum_probs=326.2
Q ss_pred CChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676 2 GSFPALVAGVWS-DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN 80 (446)
Q Consensus 2 ~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 80 (446)
|++|.|+++|++ +++.+|..|+|+|.++++++ .+....+++.|++|.|+++|.+++ ++++..|+|+|+|++.++++.
T Consensus 100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~~ 177 (510)
T 3ul1_B 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAF 177 (510)
T ss_dssp THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 789999999985 56899999999999999876 667888999999999999999999 899999999999999988999
Q ss_pred HHHHHhcCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHH
Q 043676 81 TNVVIDHGAVPIFVKLLSSPS-----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTL 155 (446)
Q Consensus 81 ~~~~~~~~~i~~L~~~L~~~~-----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L 155 (446)
+..+.+.|+++.|+.++.+++ ..+...++|++.+++.............++++.|+.++ .+.+++++..++|+|
T Consensus 178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL 256 (510)
T 3ul1_B 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI 256 (510)
T ss_dssp HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence 999999999999999998754 45788999999999976544334444556789999999 788999999999999
Q ss_pred HHhhcCCC-CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHH
Q 043676 156 SNFCRGKP-EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPA 234 (446)
Q Consensus 156 ~~l~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a 234 (446)
.+++...+ ........++++.|+.++.+.+..++..+++++++++..++.....+.+.|+++.|+.++.++++.++..|
T Consensus 257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A 336 (510)
T 3ul1_B 257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336 (510)
T ss_dssp HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHH
Confidence 99998763 22334557899999999999999999999999999999988888889999999999999999999999999
Q ss_pred HHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCCc
Q 043676 235 LRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAVIDAGLIRPIVNLLQNAEF 313 (446)
Q Consensus 235 ~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~ 313 (446)
+|+|+|++.+++.....+++.|+++.++.++.++ +..++.+|+|+|+|++. ++.+.+..+++.|+++.|++++++.++
T Consensus 337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~ 415 (510)
T 3ul1_B 337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 415 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCH
Confidence 9999999999999999999999999999999999 99999999999999987 578888899999999999999999999
Q ss_pred chHHHHHHHHHHhccC----CC-HHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676 314 DTKKEAAWAISNATSG----GT-QEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 314 ~v~~~a~~aL~~l~~~----~~-~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 375 (446)
+++..++++|.++... +. ......+.+.|+++.|..+..+++.++++.|..+|.++|..++.
T Consensus 416 ~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~ 482 (510)
T 3ul1_B 416 KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEE 482 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence 9999999999999752 12 23445566789999999999999999999999999999865443
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=9.4e-42 Score=325.52 Aligned_cols=370 Identities=25% Similarity=0.384 Sum_probs=326.6
Q ss_pred CChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676 2 GSFPALVAGVWS-DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN 80 (446)
Q Consensus 2 ~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 80 (446)
|++|.|+++|++ +++.+|..|+|+|.++++++ ......+++.|++|.|+.++.+++ ++++..|+|+|+|++.++++.
T Consensus 119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~~ 196 (529)
T 3tpo_A 119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSAF 196 (529)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHHH
Confidence 789999999974 56999999999999999875 566788999999999999999999 899999999999999988999
Q ss_pred HHHHHhcCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHH
Q 043676 81 TNVVIDHGAVPIFVKLLSSPS-----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTL 155 (446)
Q Consensus 81 ~~~~~~~~~i~~L~~~L~~~~-----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L 155 (446)
+..+.+.|+++.|+.++..++ ..+...++|++++++.............++++.|+.++ .+.+++++..++|+|
T Consensus 197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~aL 275 (529)
T 3tpo_A 197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI 275 (529)
T ss_dssp HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHHH
Confidence 999999999999999998744 45788999999999976644444444556889999999 788999999999999
Q ss_pred HHhhcCCC-CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHH
Q 043676 156 SNFCRGKP-EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPA 234 (446)
Q Consensus 156 ~~l~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a 234 (446)
.+++...+ ........+++|.|+.++.++++.++..+++++++++..++.....+.+.|+++.|+.++.++++.++..|
T Consensus 276 ~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a 355 (529)
T 3tpo_A 276 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 355 (529)
T ss_dssp HHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred HHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHH
Confidence 99998763 23344557999999999999999999999999999999988888889999999999999999999999999
Q ss_pred HHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCCc
Q 043676 235 LRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAVIDAGLIRPIVNLLQNAEF 313 (446)
Q Consensus 235 ~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~ 313 (446)
+|+|+|++.+++.....+++.|+++.++.++.++ +..++.+|+|+|+|++. ++++.+..+++.|+++.|++++.+.++
T Consensus 356 ~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~ 434 (529)
T 3tpo_A 356 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 434 (529)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCH
Confidence 9999999999999999999999999999999999 99999999999999987 578888899999999999999999999
Q ss_pred chHHHHHHHHHHhccC----CC-HHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676 314 DTKKEAAWAISNATSG----GT-QEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 314 ~v~~~a~~aL~~l~~~----~~-~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 375 (446)
+++..++++|.++... +. ......+.+.|+++.|..+..+++.+++..|..+|.++|..++.
T Consensus 435 ~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~ 501 (529)
T 3tpo_A 435 KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEE 501 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence 9999999999999742 12 23445566889999999999999999999999999999865443
No 8
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.2e-39 Score=312.98 Aligned_cols=405 Identities=16% Similarity=0.139 Sum_probs=334.8
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCCh-hh
Q 043676 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTS-EN 80 (446)
Q Consensus 2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~ 80 (446)
|.+|.|+.++.|+++.++..|++++.+++++ ...++.+++.|+ |.|..++++++ +.++..|+++|++++.... +.
T Consensus 290 G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~gv-~~L~~Ll~s~~-~~vr~~Al~~L~kl~s~~~~d~ 365 (810)
T 3now_A 290 GILQMILAMATTDDELQQRVACECLIAASSK--KDKAKALCEQGV-DILKRLYHSKN-DGIRVRALVGLCKLGSYGGQDA 365 (810)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHHH-HHHHHHTTCSC-HHHHHHHHHHHHHHHTTTTTTT
T ss_pred chHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcCc-HHHHHHHcCCC-HHHHHHHHHHHHHhccccccCc
Confidence 6799999999999999999999999997665 567778888775 99999999888 8999999999999985221 22
Q ss_pred HHHHHhcC----ChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHH
Q 043676 81 TNVVIDHG----AVPIFVKLLSSP--SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRT 154 (446)
Q Consensus 81 ~~~~~~~~----~i~~L~~~L~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~ 154 (446)
....++.| .++.+.++|.++ ++++++.|+|+|.+++.+.+.......+.|+++.|+.++ ++.+..++..++++
T Consensus 366 ~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL-~s~d~~i~~~al~~ 444 (810)
T 3now_A 366 AIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLA-RGGNQSCLYGVVTT 444 (810)
T ss_dssp SCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHH-HTTCGGGHHHHHHH
T ss_pred cccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHh-CCCChHHHHHHHHH
Confidence 21222233 356788888887 899999999999999966554444444579999999999 67889999999999
Q ss_pred HHHhhcCCCCC---------------------------------ChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhcc
Q 043676 155 LSNFCRGKPEP---------------------------------PFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLAD 201 (446)
Q Consensus 155 L~~l~~~~~~~---------------------------------~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~ 201 (446)
|.|++.+.+.. ......|++|.|+.+++++++.+++.++|+|+|++.
T Consensus 445 L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~ 524 (810)
T 3now_A 445 FVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG 524 (810)
T ss_dssp HHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 99999864211 122346899999999999999999999999999996
Q ss_pred CCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhH--HHHhcCChHHHHHHhccCchHHHHHHHHH
Q 043676 202 GTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQ--CIINHGAVPYLLDMLVHNHEEIIKKEISW 279 (446)
Q Consensus 202 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~v~~~a~~ 279 (446)
. ++....+.+.|+++.|+.++.++++..+..|+++|++++.+...... .....+++++|+.+|.++.+...+..|++
T Consensus 525 d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~ 603 (810)
T 3now_A 525 L-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLM 603 (810)
T ss_dssp S-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHH
T ss_pred C-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHH
Confidence 5 55677799999999999999999999999999999999864332110 00113589999999986524445678999
Q ss_pred HHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHH-cCChHHHHhcccCCCHHH
Q 043676 280 IISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVR-EGCVKPLCDLLLCSDPEI 358 (446)
Q Consensus 280 ~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~~ 358 (446)
+|+|++.++++....+++.|+++.|+.++.++++.++..|+++|+|++. .++....+.+ .|.++.|+.++.+++..+
T Consensus 604 AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~--~~~~~~~~v~~~g~l~~Lv~LL~s~d~~v 681 (810)
T 3now_A 604 ALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM--SEDVIKMFEGNNDRVKFLALLCEDEDEET 681 (810)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT--SHHHHHHHHSSSSHHHHHHHGGGCSSHHH
T ss_pred HHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC--ChHHHHHHHhccCcHHHHHHHhcCCCHHH
Confidence 9999998888888899999999999999999999999999999999998 4566667665 688999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHH-hChHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043676 359 VTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEE-AGGLEKIENLQSHDNNEIHEKSVKIFKTYWCG 427 (446)
Q Consensus 359 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 427 (446)
+..|+++|.++....+.. .+.+.+ .|+++.|.+|+.+++.++++.|.+++.++...
T Consensus 682 q~~Aa~ALanLt~~s~~~-------------~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 682 ATACAGALAIITSVSVKC-------------CEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHHHHHHHHHHHHHCHHH-------------HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHH-------------HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999988743332 344555 89999999999999999999999999999764
No 9
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1e-38 Score=306.81 Aligned_cols=400 Identities=18% Similarity=0.196 Sum_probs=341.8
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT 81 (446)
Q Consensus 2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 81 (446)
|.+|.|+++|+++++.++..|+++|.+++... ......+.+.|++|.|++++.+++ ++++..++.+|.+++..+++.+
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence 67999999999999999999999999999874 455677778999999999999988 8999999999999999889999
Q ss_pred HHHHhcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676 82 NVVIDHGAVPIFVKLLSSPS-DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR 160 (446)
Q Consensus 82 ~~~~~~~~i~~L~~~L~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 160 (446)
..+.+.|+++.|+.++++++ ...+..++.+|.+++. .+..+..+.+.|+++.++.++ .+.++.+++.++|+|.+++.
T Consensus 179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~ 256 (529)
T 1jdh_A 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhc
Confidence 99999999999999998754 5677788999999995 455788889999999999999 66689999999999999998
Q ss_pred CCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCccchhHHHHHH
Q 043676 161 GKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLTPALRTV 238 (446)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~~~~~a~~~l 238 (446)
..+.. ....+++|.++.++.+++++++..++++|++++..+++....+.+.|+++.|+.++.+ .++.++..|+++|
T Consensus 257 ~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 257 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp TCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 86432 2346899999999999999999999999999999888788889999999999999976 3368999999999
Q ss_pred HHhhcCCch---hhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcch
Q 043676 239 GNIVTGDDF---QTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDT 315 (446)
Q Consensus 239 ~~l~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 315 (446)
++++..++. .+..+.+.|+++.++.++.++.+..++..++|+|+|++.++ .....+.+.|+++.|+.++.++++++
T Consensus 335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v 413 (529)
T 1jdh_A 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDT 413 (529)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG-GGHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcCh-hhhHHHHHcCCHHHHHHHHHHHhHHH
Confidence 999986544 35577789999999999998834699999999999998754 44577889999999999999877777
Q ss_pred HHHHHHHHHH----------------------hccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676 316 KKEAAWAISN----------------------ATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVG 373 (446)
Q Consensus 316 ~~~a~~aL~~----------------------l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 373 (446)
++.|+|++.| ++. .++.+..+.+.|+++.|+.++.+++++++..+.++|.++...
T Consensus 414 ~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~--~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~- 490 (529)
T 1jdh_A 414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD- 490 (529)
T ss_dssp C-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-
T ss_pred HHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc--CchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC-
Confidence 7766665554 554 456677788999999999999999999999999999997643
Q ss_pred hhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 043676 374 EAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTY 424 (446)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~ 424 (446)
+. +...+.+.|+++.|..++.++++++++.|.+++.++
T Consensus 491 ~~-------------~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 491 KE-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HH-------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HH-------------HHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 21 468899999999999999999999999999999875
No 10
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.3e-39 Score=314.41 Aligned_cols=365 Identities=15% Similarity=0.109 Sum_probs=316.4
Q ss_pred hHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHH-hcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCCh--
Q 043676 4 FPALVAGVWSD--DNSLQLEATTLSRKLLSFDRNPPIEKVI-QSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTS-- 78 (446)
Q Consensus 4 i~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~-- 78 (446)
++.|+++|.++ |++++..|++.|..++.. .+....+. +.|++|.|++++++++ +.++..|+++|+|++.+++
T Consensus 379 v~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~q 455 (810)
T 3now_A 379 AEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQ 455 (810)
T ss_dssp HHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCCC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchhh
Confidence 56788888887 899999999999998765 44445555 5799999999999988 8999999999999998442
Q ss_pred ---------------------------hhH---HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 043676 79 ---------------------------ENT---NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLS 128 (446)
Q Consensus 79 ---------------------------~~~---~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 128 (446)
..+ ..+++.|+++.|+.+++++++.+++.|+|+|+|++. ++.++..+.+
T Consensus 456 ~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~ 534 (810)
T 3now_A 456 EMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQ 534 (810)
T ss_dssp CCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHH
Confidence 112 678899999999999999999999999999999995 5668999999
Q ss_pred cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh---hhhhhhHHHHHHhhcCC-CHhHHHHHHHHHHHhccCCc
Q 043676 129 QGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPF---DQVRPALPALAQLVHSN-DEDVLTYACWSLSYLADGTN 204 (446)
Q Consensus 129 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~~~~~~~l~~ll~~~-~~~v~~~~~~~l~~l~~~~~ 204 (446)
.|++++|+.++ .+.++..++.|+|+|.+++.+...... ....+++|.|+.+|.++ +...+..++++|.|++..++
T Consensus 535 ~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d 613 (810)
T 3now_A 535 EGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNE 613 (810)
T ss_dssp TTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred CCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCH
Confidence 99999999999 667788999999999999876421111 12357899999999866 34456789999999999988
Q ss_pred HHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHh-cCChHHHHHHhccCchHHHHHHHHHHHHH
Q 043676 205 DKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIIN-HGAVPYLLDMLVHNHEEIIKKEISWIISN 283 (446)
Q Consensus 205 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~v~~~a~~~l~~ 283 (446)
+....+++.|+++.|+.++.++++.++..|+++++|++.+.+ ....+.+ .|.++.|+.++.++ +..++.+|+|+|+|
T Consensus 614 ~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALan 691 (810)
T 3now_A 614 SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAI 691 (810)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 788889999999999999999999999999999999998654 4555554 78999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHH-cCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCC---CHHHH
Q 043676 284 ITAGNREQIQAVID-AGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCS---DPEIV 359 (446)
Q Consensus 284 l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~---~~~~~ 359 (446)
++.+++..++.+++ .|+++.|+.++.+++.+++..|+|+|.|++.. ++++...+.+.|++++|.++++.. ++++.
T Consensus 692 Lt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~ 770 (810)
T 3now_A 692 ITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAR 770 (810)
T ss_dssp HHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHH
T ss_pred HhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHH
Confidence 99878888899998 89999999999999999999999999999875 678899999999999999999655 78999
Q ss_pred HHHHHHHHHHHHhhhhh
Q 043676 360 TVCLIGLENILKVGEAE 376 (446)
Q Consensus 360 ~~~~~~l~~l~~~~~~~ 376 (446)
+.++++|.++++.+.-.
T Consensus 771 e~Al~aL~~ll~~g~~~ 787 (810)
T 3now_A 771 EVATQCLAAAERYRIIE 787 (810)
T ss_dssp HHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhCCCcc
Confidence 99999999999876654
No 11
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.4e-39 Score=303.79 Aligned_cols=365 Identities=18% Similarity=0.200 Sum_probs=308.4
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHH
Q 043676 46 VVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDL 125 (446)
Q Consensus 46 ~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 125 (446)
.+|.|+++|++++ ++++..|+++|.+++.+++..+..+.+.|+++.|+++|+++++.++..|+++|.|++..+++.+..
T Consensus 3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4899999999999 899999999999999877778889999999999999999999999999999999999888889999
Q ss_pred HHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc--------C--------CCHhHH
Q 043676 126 VLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH--------S--------NDEDVL 189 (446)
Q Consensus 126 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~--------~--------~~~~v~ 189 (446)
+.+.|+++.|+.+|..+.++++++.++|+|+|++.+...+..... |++|.|+.++. + .++.+.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 999999999999995478899999999999999998544444445 99999999993 2 246777
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhcCC------CCccchhHHHHHHHHhhcC------------------
Q 043676 190 TYACWSLSYLADGTNDKIQAVIEA-GVCPRLVELLGH------PSPSVLTPALRTVGNIVTG------------------ 244 (446)
Q Consensus 190 ~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~------~~~~~~~~a~~~l~~l~~~------------------ 244 (446)
..++++|.+++.. ++....+.+. |+++.|+.++.+ .+..+...++.++.+++..
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 8999999999987 6677778887 999999999985 4667888899999998732
Q ss_pred --------------------------------CchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHH--
Q 043676 245 --------------------------------DDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNRE-- 290 (446)
Q Consensus 245 --------------------------------~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~-- 290 (446)
.+...+.+++.++++.++.+|.++.++.+++.|+|+|+|++.++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 1122334456677889999998775789999999999999975422
Q ss_pred -HH-HHHH-HcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCC------HHHHHH
Q 043676 291 -QI-QAVI-DAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSD------PEIVTV 361 (446)
Q Consensus 291 -~~-~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~------~~~~~~ 361 (446)
.. +..+ +.|++|.|++++.+++.++++.|+++|.+++.. ++. ..++..++++.|+++|...+ +++...
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~~~-~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~ 396 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLL-HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGG-HHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--HHH-HHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence 22 3344 689999999999999999999999999999874 333 44456689999999998764 368889
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCC-CHHHHHHHHHHHHHhcCCCC
Q 043676 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHD-NNEIHEKSVKIFKTYWCGRN 429 (446)
Q Consensus 362 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~~~~ 429 (446)
++++|.+++...+. +...+.+.|+++.|.+|+.++ ++++++.|.++|++||...+
T Consensus 397 ~l~~l~ni~~~~~~-------------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 397 ACYTVRNLMASQPQ-------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHTTCTH-------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHhcCHH-------------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 99999999865544 468889999999999999999 99999999999999997654
No 12
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.6e-39 Score=297.76 Aligned_cols=365 Identities=18% Similarity=0.171 Sum_probs=295.6
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCC-----------hHHHHHHHHHH
Q 043676 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDY-----------PQLQYEAAWVL 70 (446)
Q Consensus 2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~-----------~~~~~~a~~~L 70 (446)
+.++.|+.++.+.|+.- ..+.|..+... .+.+..+++.|++|.|+++|+..+. ++++..|+|+|
T Consensus 32 ~~~~~l~~~~~~~~~~~---~~~~ll~~~~~--~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al 106 (458)
T 3nmz_A 32 EMVYSLLSMLGTHDKDD---MSRTLLAMSSS--QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAAL 106 (458)
T ss_dssp -------------CCHH---HHHHHHHHHSS--TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHH---HHHHHHHHHcC--CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHH
Confidence 46788899998888763 55566655554 4556889999999999999997542 69999999999
Q ss_pred HHHcCCChhhHHHHHhcCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhCCChHHHHHH
Q 043676 71 INIASGTSENTNVVIDHGAV----------PIFVKLLSSPS--DD-----VRE-------QAVWALGNVAGDSPRCRDLV 126 (446)
Q Consensus 71 ~~l~~~~~~~~~~~~~~~~i----------~~L~~~L~~~~--~~-----v~~-------~a~~~l~~l~~~~~~~~~~~ 126 (446)
.|++.+.++......+.+++ +.+++++.++. .+ +++ +|+|+|+|++.+ +++|+.+
T Consensus 107 ~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i 185 (458)
T 3nmz_A 107 HNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAM 185 (458)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHH
Confidence 99999888888887777777 66667776642 22 555 999999999854 8899999
Q ss_pred HHcCChHHHHHHhcc----------ccchhHHHHHHHHHHHhhcCCC-CCChhh-hhhhHHHHHHhhcCCCHhHHHHHHH
Q 043676 127 LSQGALIPLLAELNE----------HAKLSMLRNATRTLSNFCRGKP-EPPFDQ-VRPALPALAQLVHSNDEDVLTYACW 194 (446)
Q Consensus 127 ~~~~~i~~l~~~l~~----------~~~~~~~~~a~~~L~~l~~~~~-~~~~~~-~~~~~~~l~~ll~~~~~~v~~~~~~ 194 (446)
.+.|++++|+.++.. +.++.+++.++|+|.|++.+.+ ...... ..|++|.|+.+|++++++++..+++
T Consensus 186 ~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~ 265 (458)
T 3nmz_A 186 NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIAS 265 (458)
T ss_dssp HHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999942 2356789999999999998863 222222 4577999999999999999999999
Q ss_pred HHHHhccC-CcHHHHHHHHhCcHHHHHHhc-CCCCccchhHHHHHHHHhhcCCchhhHHHH-hcCChHHHHHHhccCchH
Q 043676 195 SLSYLADG-TNDKIQAVIEAGVCPRLVELL-GHPSPSVLTPALRTVGNIVTGDDFQTQCII-NHGAVPYLLDMLVHNHEE 271 (446)
Q Consensus 195 ~l~~l~~~-~~~~~~~~~~~~~~~~l~~ll-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~ 271 (446)
+|++++.. ++.....+.+.|+++.|+.+| .+.+..++..|+.+|+||+.+++.....+. ..|+++.|+.+|.+..+.
T Consensus 266 aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~ 345 (458)
T 3nmz_A 266 VLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT 345 (458)
T ss_dssp HHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSS
T ss_pred HHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCc
Confidence 99999985 456667788999999999975 557788999999999999986666666666 789999999999876232
Q ss_pred ---HHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChH
Q 043676 272 ---IIKKEISWIISNITA---GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVK 345 (446)
Q Consensus 272 ---~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~ 345 (446)
.+++.|+|+|.|++. ++++.++.+.+.|+++.|+.++.+++..+++.|+++|.|++.. ++++...+.+.|+++
T Consensus 346 ~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~ 424 (458)
T 3nmz_A 346 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVS 424 (458)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHH
T ss_pred chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHH
Confidence 589999999999986 7889999999999999999999999999999999999999864 688899999999999
Q ss_pred HHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676 346 PLCDLLLCSDPEIVTVCLIGLENILKVG 373 (446)
Q Consensus 346 ~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 373 (446)
.|++++.++++.++..|+++|.+++...
T Consensus 425 ~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 425 MLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999998764
No 13
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.2e-38 Score=306.75 Aligned_cols=404 Identities=17% Similarity=0.181 Sum_probs=348.7
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT 81 (446)
Q Consensus 2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 81 (446)
|.+|.|+++|+++++.++..|+++|.+++... ......+.+.|+++.|++++++++ +.++..++.+|.+++..+++.+
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~ 175 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 175 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHH
Confidence 67899999999999999999999999999875 556677788999999999999998 8999999999999998789999
Q ss_pred HHHHhcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676 82 NVVIDHGAVPIFVKLLSSPS-DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR 160 (446)
Q Consensus 82 ~~~~~~~~i~~L~~~L~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 160 (446)
..+.+.|+++.|+.++++.+ ..++..++.+|++++. .+..+..+.+.|+++.++.++ .+.+..+++.++|+|.+++.
T Consensus 176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999854 6788999999999995 556788999999999999999 66789999999999999998
Q ss_pred CCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCC--ccchhHHHHHH
Q 043676 161 GKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPS--PSVLTPALRTV 238 (446)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~~a~~~l 238 (446)
..+.. ....++++.|+.++.+.+++++..++++|++++...+.....+.+.|+++.|+.++.+.+ +.++..|+++|
T Consensus 254 ~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 254 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp GCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 76332 344689999999999999999999999999999988777888999999999999998733 68999999999
Q ss_pred HHhhcCCch---hhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC---
Q 043676 239 GNIVTGDDF---QTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAE--- 312 (446)
Q Consensus 239 ~~l~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--- 312 (446)
++++...+. ....+.+.++++.++.+|.++.+..+++.|+|+|+|++.++ .....+++.|+++.|++++.+.+
T Consensus 332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~-~~~~~i~~~~~i~~Lv~lL~~~~~~v 410 (644)
T 2z6h_A 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDT 410 (644)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG-GGHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCH-HHHHHHHHcCCHHHHHHHHhccchhh
Confidence 999975442 33446788999999999998744799999999999998764 34478889999999999998743
Q ss_pred -------------------cchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676 313 -------------------FDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVG 373 (446)
Q Consensus 313 -------------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 373 (446)
.+++..++.+|.+++. ++..+..+.+.|+++.|++++.+.+++++..++++|.++....
T Consensus 411 r~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~ 488 (644)
T 2z6h_A 411 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 488 (644)
T ss_dssp TTC----------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSH
T ss_pred hhHhhhccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCH
Confidence 3466677888888876 4577778889999999999999999999999999999987532
Q ss_pred hhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 043676 374 EAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGR 428 (446)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 428 (446)
. ++..+.+.|+++.|..++.++++++++.|.++|.++....
T Consensus 489 -~-------------~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 489 -E-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp -H-------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred -H-------------HHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 1 4688999999999999999999999888777777765544
No 14
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.7e-38 Score=304.45 Aligned_cols=369 Identities=25% Similarity=0.330 Sum_probs=327.4
Q ss_pred CChHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676 2 GSFPALVAGVWSDD-NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN 80 (446)
Q Consensus 2 ~~i~~l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 80 (446)
|.+|.|+++|.+++ +.++..|+++|.+++... .+....+++.|++|.|+.+|.+++ +.++..|+++|++++..++..
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~ 194 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC 194 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 68999999999887 999999999999999864 566778889999999999999988 899999999999999878889
Q ss_pred HHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 043676 81 TNVVIDHGAVPIFVKLL-SSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFC 159 (446)
Q Consensus 81 ~~~~~~~~~i~~L~~~L-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 159 (446)
+..+.+.|+++.|+.++ .++++.++..++|+|++++...+.. ......++++.++.++ .+.++.++..++++|.+++
T Consensus 195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 5688999999999999999765432 2344578999999999 7789999999999999999
Q ss_pred cCCCCC-ChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC-CccchhHHHHH
Q 043676 160 RGKPEP-PFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLTPALRT 237 (446)
Q Consensus 160 ~~~~~~-~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~~~~a~~~ 237 (446)
...+.. ......++++.|+.++.++++.++..++++|++++...+...+.+.+.|+++.|+.++.++ ++.++..|+++
T Consensus 273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 352 (528)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence 775322 2344568999999999999999999999999999998888888888999999999999998 89999999999
Q ss_pred HHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCCcchH
Q 043676 238 VGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NREQIQAVIDAGLIRPIVNLLQNAEFDTK 316 (446)
Q Consensus 238 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~ 316 (446)
|+|++.+++.....+++.++++.|+.++.++ +..++..|+|+|+|++.. +++....+++.|+++.|+.++.+.+++++
T Consensus 353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~ 431 (528)
T 4b8j_A 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIV 431 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 9999998888888888999999999999998 999999999999999875 78888899999999999999999999999
Q ss_pred HHHHHHHHHhccCCCH----------HHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676 317 KEAAWAISNATSGGTQ----------EQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 317 ~~a~~aL~~l~~~~~~----------~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 375 (446)
..++++|.+++..... .....+.+.|+++.+..+.++++++++..+.+++.+++...+.
T Consensus 432 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~ 500 (528)
T 4b8j_A 432 TVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEED 500 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence 9999999999874322 2466777889999999999999999999999999998876544
No 15
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=3.4e-38 Score=302.17 Aligned_cols=370 Identities=24% Similarity=0.315 Sum_probs=326.3
Q ss_pred CChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676 2 GSFPALVAGVWSD-DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN 80 (446)
Q Consensus 2 ~~i~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 80 (446)
|.+|.|+++|.++ ++.++..|+++|.+++... .+....+.+.|+++.|+.+|.+++ +.++..|+++|++++..+++.
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccc
Confidence 6899999999997 8999999999999998864 455677888999999999999988 899999999999999977899
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676 81 TNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR 160 (446)
Q Consensus 81 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 160 (446)
+..+...|+++.|+.++.++++.++..++|+|++++.............++++.++.++ .+.++.++..++|+|.+++.
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999966512223445678999999999 67789999999999999998
Q ss_pred CCCC-CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHH
Q 043676 161 GKPE-PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVG 239 (446)
Q Consensus 161 ~~~~-~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~ 239 (446)
..+. .......++++.|+.++.+.++.++..++++|++++...+...+.+.+.|+++.|+.++.++++.++..|+++|+
T Consensus 287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~ 366 (530)
T 1wa5_B 287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 366 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7522 222334589999999999999999999999999999988878888888999999999999999999999999999
Q ss_pred HhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CH--HHHHHHHHcCChHHHHHHHhcCCcchH
Q 043676 240 NIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NR--EQIQAVIDAGLIRPIVNLLQNAEFDTK 316 (446)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~ 316 (446)
+++.+++.....+++.++++.|+.++.++ ++.++..|+|+|++++.. ++ +....+++.|+++.|+.++.+.++.++
T Consensus 367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 445 (530)
T 1wa5_B 367 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 445 (530)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence 99998888888888999999999999988 899999999999999873 44 677888899999999999999999999
Q ss_pred HHHHHHHHHhccCCCH----------HHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676 317 KEAAWAISNATSGGTQ----------EQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 317 ~~a~~aL~~l~~~~~~----------~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 375 (446)
..++++|.+++..... .....+.+.|+++.|..++.+++++++..+.++|.+++...+.
T Consensus 446 ~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~ 514 (530)
T 1wa5_B 446 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEED 514 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcccc
Confidence 9999999999874322 2356677889999999999999999999999999998875443
No 16
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=3.3e-39 Score=301.32 Aligned_cols=363 Identities=16% Similarity=0.182 Sum_probs=302.2
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
.+|.|+++|+++++.+|..|+++|.+++..+ .+....+.+.|++|.|+++|++++ +.++..|+++|.|++.++++++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 5899999999999999999999999988653 344558899999999999999988 89999999999999997799999
Q ss_pred HHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc--------c-------cchh
Q 043676 83 VVIDHGAVPIFVKLLS-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE--------H-------AKLS 146 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--------~-------~~~~ 146 (446)
.+++.|+++.|+++|. ++++++++.++|+|+|++.. +..+..+.+ |+++.|+.++.. . .++.
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 9999999999999999 78999999999999999977 667888888 999999999931 1 3567
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhhh-hhHHHHHHhhcC------CCHhHHHHHHHHHHHhccCC----------------
Q 043676 147 MLRNATRTLSNFCRGKPEPPFDQVR-PALPALAQLVHS------NDEDVLTYACWSLSYLADGT---------------- 203 (446)
Q Consensus 147 ~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~l~~ll~~------~~~~v~~~~~~~l~~l~~~~---------------- 203 (446)
+++.++|+|+|++.+.......... |+++.|+.++++ .+.++.+.++.++.+++...
T Consensus 159 v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~ 238 (457)
T 1xm9_A 159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence 8889999999999874333333334 999999999985 46678888999999886321
Q ss_pred ----------------------------------cHHHHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHHhhcCCchh
Q 043676 204 ----------------------------------NDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGNIVTGDDFQ 248 (446)
Q Consensus 204 ----------------------------------~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~ 248 (446)
+...+.+.+.|+++.++.+|.+ .++.+++.|+|+|+|++.++...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~ 318 (457)
T 1xm9_A 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318 (457)
T ss_dssp ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence 0111223445678888888876 45788999999999999876543
Q ss_pred h----HHHH-hcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCc------chHH
Q 043676 249 T----QCII-NHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEF------DTKK 317 (446)
Q Consensus 249 ~----~~~~-~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~------~v~~ 317 (446)
. +..+ +.++++.|+++|.++ +.+++.+|+|+|.|++.+ ++ ...++..++++.|++++.++++ ++..
T Consensus 319 ~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~-~~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~ 395 (457)
T 1xm9_A 319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-PL-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS 395 (457)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-GG-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred hHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcC-HH-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence 2 3334 689999999999999 999999999999999874 33 3455666899999999998754 5788
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCC-CHHHHHHHHHHHHHHHHhh
Q 043676 318 EAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCS-DPEIVTVCLIGLENILKVG 373 (446)
Q Consensus 318 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~ 373 (446)
.++++|.++... ++++...+.+.|+++.|++++.++ +++++..|.++|.+++...
T Consensus 396 ~~l~~l~ni~~~-~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 396 SACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 999999999876 457788888899999999999999 9999999999999988643
No 17
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=2.7e-38 Score=297.58 Aligned_cols=368 Identities=25% Similarity=0.308 Sum_probs=323.1
Q ss_pred CChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676 2 GSFPALVAGVWSD-DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN 80 (446)
Q Consensus 2 ~~i~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 80 (446)
|.+|.|++.|+++ ++.++..|+++|.+++... .+....+.+.|++|.|++++++++ +.++..|+++|++++..+++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~ 141 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC 141 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence 5789999999998 8999999999999998864 455667788999999999999998 899999999999999988889
Q ss_pred HHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 043676 81 TNVVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF 158 (446)
Q Consensus 81 ~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 158 (446)
+..+.+.|+++.|+.++.+ +++.++..++++|++++... +...... ..++++.++.++ .+.++.++..++|+|.++
T Consensus 142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYL 219 (450)
T ss_dssp HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence 9999999999999999996 78999999999999999654 3222222 267899999999 677899999999999999
Q ss_pred hcCC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHH
Q 043676 159 CRGK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRT 237 (446)
Q Consensus 159 ~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~ 237 (446)
+... +........++++.++.++.++++.++..++++|++++...+...+.+.+.|+++.++.++.++++.++..|+++
T Consensus 220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299 (450)
T ss_dssp TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence 9875 222333446899999999999999999999999999999888777778888999999999999999999999999
Q ss_pred HHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCCcchH
Q 043676 238 VGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NREQIQAVIDAGLIRPIVNLLQNAEFDTK 316 (446)
Q Consensus 238 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~ 316 (446)
|++++.+++...+.+++.++++.++.++.++ ++.+|..|+|+|++++.+ +++....+++.|+++.|+.++++++++++
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 378 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV 378 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence 9999998888888888899999999999998 899999999999999874 67888888889999999999999999999
Q ss_pred HHHHHHHHHhccCCCH----------HHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhh
Q 043676 317 KEAAWAISNATSGGTQ----------EQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGE 374 (446)
Q Consensus 317 ~~a~~aL~~l~~~~~~----------~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~ 374 (446)
..|+++|.+++..... .....+.+.|+++.|..++++++++++..+..+|.+++...+
T Consensus 379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 446 (450)
T 2jdq_A 379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTED 446 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 9999999999874322 234567788999999999999999999999999999986543
No 18
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=9.1e-37 Score=302.61 Aligned_cols=419 Identities=17% Similarity=0.181 Sum_probs=355.1
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT 81 (446)
Q Consensus 2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 81 (446)
|++|.|++.|+++++.++..|+++|.+++... ......+.+.|+++.|++++.+++ ..++..++.+|.+++..+++.+
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~ 311 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 311 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHH
Confidence 67999999999999999999999999999874 455666778999999999999988 8999999999999998789999
Q ss_pred HHHHhcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676 82 NVVIDHGAVPIFVKLLSSPS-DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR 160 (446)
Q Consensus 82 ~~~~~~~~i~~L~~~L~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 160 (446)
..+.+.|+++.|+.++++.+ ...+..++.++.+++. .+..+..+.+.|+++.|+.++ .+.+..+++.++++|.+++.
T Consensus 312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~ 389 (780)
T 2z6g_A 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 389 (780)
T ss_dssp HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence 99999999999999999855 5567788999999995 455788888999999999999 66788999999999999998
Q ss_pred CCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCc-cchhHHHHHH
Q 043676 161 GKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-PSP-SVLTPALRTV 238 (446)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~-~~~~~a~~~l 238 (446)
..+. .....++++.|+.++.+.++.++..++++|++++...+.....+.+.|+++.|+.++.+ .+. .++..|+++|
T Consensus 390 ~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL 467 (780)
T 2z6g_A 390 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467 (780)
T ss_dssp TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 7633 23347899999999999999999999999999999888788888889999999999987 333 8999999999
Q ss_pred HHhhcCCchh---hHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC---
Q 043676 239 GNIVTGDDFQ---TQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAE--- 312 (446)
Q Consensus 239 ~~l~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--- 312 (446)
++++...+.. ...+...++++.|+.+|.++..+.++..|+|+|+|++.+ +.....+.+.|+++.|++++.+++
T Consensus 468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~ 546 (780)
T 2z6g_A 468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDT 546 (780)
T ss_dssp HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcchhH
Confidence 9998765442 346778899999999999883459999999999999875 455577889999999999997643
Q ss_pred -------------------cchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676 313 -------------------FDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVG 373 (446)
Q Consensus 313 -------------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 373 (446)
.+++..++.+|++++. ++..+..+.+.|+++.|++++.+.++.++..++.+|.++....
T Consensus 547 ~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~ 624 (780)
T 2z6g_A 547 QRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 624 (780)
T ss_dssp HHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSH
T ss_pred HHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCH
Confidence 3466778888888875 5677778889999999999999999999999999999987432
Q ss_pred hhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCcc-----cccccccccCC
Q 043676 374 EAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEEE-----DALGSNVITNG 443 (446)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~-----~~~~~~~~~~~ 443 (446)
+ ++..+.+.|+++.|..++.++++++++.|.++|.++.......- .++.+++|.++
T Consensus 625 ~--------------~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l~~~ll~~l~~~~ 685 (780)
T 2z6g_A 625 E--------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTE 685 (780)
T ss_dssp H--------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHC----
T ss_pred H--------------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhhhccccHHHHHHHHhCC
Confidence 1 47899999999999999999999999999999999887654332 24556666654
No 19
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=9.4e-38 Score=292.00 Aligned_cols=366 Identities=19% Similarity=0.202 Sum_probs=302.4
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCC-Chhh
Q 043676 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASG-TSEN 80 (446)
Q Consensus 2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~ 80 (446)
+.+|.|+++|.++++.+|..|+++|.+++... .+....+.+.|++|.|+++|.+++ ++++..|+++|.|++.+ ++++
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence 46999999999999999999999999998764 667888999999999999999999 99999999999999984 6899
Q ss_pred HHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc-----------------cc
Q 043676 81 TNVVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN-----------------EH 142 (446)
Q Consensus 81 ~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-----------------~~ 142 (446)
+..+++.|+++.|+.+|.+ .+.++++.++++|+||+. .+..+..+.+ ++++.|++++. ..
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999997 678999999999999996 4567777775 57999999872 12
Q ss_pred cchhHHHHHHHHHHHhhcCCCC-CChhh-hhhhHHHHHHhhcC------CCHhHHHHHHHHHHHhccCCcHH--------
Q 043676 143 AKLSMLRNATRTLSNFCRGKPE-PPFDQ-VRPALPALAQLVHS------NDEDVLTYACWSLSYLADGTNDK-------- 206 (446)
Q Consensus 143 ~~~~~~~~a~~~L~~l~~~~~~-~~~~~-~~~~~~~l~~ll~~------~~~~v~~~~~~~l~~l~~~~~~~-------- 206 (446)
.++.++.+++++|.||+...+. +..+. ..|+++.|+.++++ .+....+.++++|.||+......
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 3578999999999999987633 33333 36778899999874 46789999999999998652110
Q ss_pred -----------------HHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHHhhcCCchh----hHHHHhcCChHHHHHH
Q 043676 207 -----------------IQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGNIVTGDDFQ----TQCIINHGAVPYLLDM 264 (446)
Q Consensus 207 -----------------~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~----~~~~~~~~~~~~l~~~ 264 (446)
...+.+.++++.++.++.. .++.+++.|+++|.||+.+.... ...+.+.++++.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 1112233556788888864 67889999999999999866322 2233457889999999
Q ss_pred hccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--------CcchHHHHHHHHHHhccCCCHHHHH
Q 043676 265 LVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA--------EFDTKKEAAWAISNATSGGTQEQIK 336 (446)
Q Consensus 265 l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--------~~~v~~~a~~aL~~l~~~~~~~~~~ 336 (446)
|.++ +..++..|+|+|+|++.+.. .. ..+..|+++.|+.+|.++ +.++...|+++|.|++.. ++++.+
T Consensus 364 L~s~-~~~v~~~A~~aL~nLs~~~~-~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~ 439 (584)
T 3l6x_A 364 LTNE-HERVVKAASGALRNLAVDAR-NK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAK 439 (584)
T ss_dssp GGCS-CHHHHHHHHHHHHHHHTTCS-CH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HcCC-CHHHHHHHHHHHHHHhCChh-HH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHH
Confidence 9999 88999999999999987542 33 345779999999999876 357889999999999866 688999
Q ss_pred HHHHcCChHHHHhcccCC--CHHHHHHHHHHHHHHHHhhhh
Q 043676 337 HLVREGCVKPLCDLLLCS--DPEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 337 ~l~~~~~i~~L~~ll~~~--~~~~~~~~~~~l~~l~~~~~~ 375 (446)
.+.+.|+++.|++++.+. .+.++..|.++|.++....+.
T Consensus 440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~el 480 (584)
T 3l6x_A 440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKEL 480 (584)
T ss_dssp HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHH
Confidence 999999999999999886 789999999999998865443
No 20
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=3e-37 Score=288.61 Aligned_cols=369 Identities=18% Similarity=0.189 Sum_probs=305.6
Q ss_pred hcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChH
Q 043676 43 QSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGD-SPR 121 (446)
Q Consensus 43 ~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~-~~~ 121 (446)
..+.+|.|+++|.+++ ++++..|+++|.+++..+++++..+++.|+|+.|+.+|+++++.+++.|+++|.||+.. +++
T Consensus 46 ~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred ccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 4578999999999998 89999999999999988999999999999999999999999999999999999999975 688
Q ss_pred HHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc------------------C
Q 043676 122 CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH------------------S 183 (446)
Q Consensus 122 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~------------------~ 183 (446)
++..+.+.|++++|+.+|....+..+++.++++|++|+........ ...+++|.|+.++. .
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~-I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKME-IVDHALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHH-HHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHH-HHhccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999995556788999999999999986533333 33678999999871 2
Q ss_pred CCHhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhcCC------CCccchhHHHHHHHHhhcCCc----------
Q 043676 184 NDEDVLTYACWSLSYLADGTNDKIQAVIEA-GVCPRLVELLGH------PSPSVLTPALRTVGNIVTGDD---------- 246 (446)
Q Consensus 184 ~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~------~~~~~~~~a~~~l~~l~~~~~---------- 246 (446)
.++.+++.+.++|.|++...++..+.+.+. |+++.|+.++++ .+....+.|+++|.||+....
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 367999999999999999887766667774 667899999864 456788999999999987521
Q ss_pred ---------------hhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCH---HHHH-HHHHcCChHHHHHH
Q 043676 247 ---------------FQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNR---EQIQ-AVIDAGLIRPIVNL 307 (446)
Q Consensus 247 ---------------~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~---~~~~-~~~~~~~i~~L~~l 307 (446)
.....+.+.++++.++.+|.+..++.+++.|+++|.|++.+.. ...+ .+.+.++++.|+++
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 1112223345577889999754478999999999999987641 2223 34457889999999
Q ss_pred HhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCC--------CHHHHHHHHHHHHHHHHhhhhhhcc
Q 043676 308 LQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCS--------DPEIVTVCLIGLENILKVGEAERNM 379 (446)
Q Consensus 308 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--------~~~~~~~~~~~l~~l~~~~~~~~~~ 379 (446)
+.+++..++..|+++|.|++.... .... +..|+++.|+++|.+. +.+++..++++|.+++...+..
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~~--~~~~-I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~--- 437 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDAR--NKEL-IGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA--- 437 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTCS--CHHH-HHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH---
T ss_pred HcCCCHHHHHHHHHHHHHHhCChh--HHHH-HHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHH---
Confidence 999999999999999999998643 3333 4678999999999876 4678899999999998765543
Q ss_pred cCCCCccchHHHHHHHhChHHHHHHhhcCC--CHHHHHHHHHHHHHhcCCCC
Q 043676 380 GTTIGDVNQYAQFVEEAGGLEKIENLQSHD--NNEIHEKSVKIFKTYWCGRN 429 (446)
Q Consensus 380 ~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~~~~ 429 (446)
.+.+.+.|+++.|..|..+. .+.+++.|.++|.+++...+
T Consensus 438 ----------~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 438 ----------AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp ----------HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred ----------HHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 57888999999999998875 88999999999999987544
No 21
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.7e-36 Score=291.25 Aligned_cols=403 Identities=16% Similarity=0.155 Sum_probs=340.0
Q ss_pred CChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676 2 GSFPALVAGVWS-DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN 80 (446)
Q Consensus 2 ~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 80 (446)
|.++.|++.|.+ +++.++..++.+|.+++.. .+....+.+.|++|.|++++++++ +.++..|+++|.+++..++..
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence 468899999975 4899999999999998765 457788889999999999999999 899999999999999866778
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676 81 TNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR 160 (446)
Q Consensus 81 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 160 (446)
+..+.+.|+++.|++++.++++.++..++.+|.+++..+++.+..+.+.|+++.++.++........+..++.+|.+++.
T Consensus 136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 215 (529)
T 1jdh_A 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999988888999999999999999999666667788889999999998
Q ss_pred CCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHH
Q 043676 161 GKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240 (446)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~ 240 (446)
...........++++.++.++.++++.++..+++++.+++...+... ...++++.|++++.++++.++..|+++|++
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 66544555567999999999999999999999999999997654321 123789999999999999999999999999
Q ss_pred hhcCCchhhHHHHhcCChHHHHHHhccC-chHHHHHHHHHHHHHHhcCCHH---HHHHHHHcCChHHHHHHHhcCC-cch
Q 043676 241 IVTGDDFQTQCIINHGAVPYLLDMLVHN-HEEIIKKEISWIISNITAGNRE---QIQAVIDAGLIRPIVNLLQNAE-FDT 315 (446)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~v~~~a~~~l~~l~~~~~~---~~~~~~~~~~i~~L~~ll~~~~-~~v 315 (446)
++.+++.....+.+.|+++.++.++.+. .++.++..|+++|+|++.++++ .+..+.+.|+++.|++++.+++ +.+
T Consensus 293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v 372 (529)
T 1jdh_A 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence 9998888888899999999999999763 1378999999999999875332 4567888999999999999876 599
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHH----------------------HHHhh
Q 043676 316 KKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLEN----------------------ILKVG 373 (446)
Q Consensus 316 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~----------------------l~~~~ 373 (446)
+..++++|+|++.. ++....+.+.|+++.|++++.+++++++..+.|++.+ +....
T Consensus 373 ~~~a~~~l~nl~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~ 450 (529)
T 1jdh_A 373 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 450 (529)
T ss_dssp HHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcC--hhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc
Confidence 99999999999974 3445778899999999999998777777766665554 33221
Q ss_pred hhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043676 374 EAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWC 426 (446)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 426 (446)
..+..+.+.|+++.|..+..+++++++..|.+.+.++..
T Consensus 451 --------------~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~ 489 (529)
T 1jdh_A 451 --------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 489 (529)
T ss_dssp --------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred --------------hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence 135678899999999999999999999999999998764
No 22
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=7.9e-37 Score=279.90 Aligned_cols=325 Identities=17% Similarity=0.167 Sum_probs=276.3
Q ss_pred CChHHHHHhhcCC------------CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCH----------HHHHHhhcCCC-
Q 043676 2 GSFPALVAGVWSD------------DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVV----------PRFVEFLMRED- 58 (446)
Q Consensus 2 ~~i~~l~~~l~s~------------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~----------~~L~~ll~~~~- 58 (446)
|.+|.|+++|+.. ++.++..|+|+|.+++++. ++..+...+.+++ +.+++++.+..
T Consensus 70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 7899999999963 3799999999999999987 6666776777777 66777777652
Q ss_pred ChH-----HHH-------HHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC-----------CCHHHHHHHHHHHHHh
Q 043676 59 YPQ-----LQY-------EAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS-----------PSDDVREQAVWALGNV 115 (446)
Q Consensus 59 ~~~-----~~~-------~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-----------~~~~v~~~a~~~l~~l 115 (446)
..+ ++. +|+|+|.|++. ++++|..+++.|+++.|+.+|.. .++.+++.|+|+|.|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nL 227 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL 227 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHH
Confidence 112 444 99999999987 69999999999999999999942 3477899999999999
Q ss_pred hCCChHHHHHHHH-cCChHHHHHHhccccchhHHHHHHHHHHHhhcCC--CCCChhhhhhhHHHHHHhh-cCCCHhHHHH
Q 043676 116 AGDSPRCRDLVLS-QGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK--PEPPFDQVRPALPALAQLV-HSNDEDVLTY 191 (446)
Q Consensus 116 ~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~l~~ll-~~~~~~v~~~ 191 (446)
+.+++..+..+.. .|+++.|+.+| .+.+++++..++|+|.+|+... ..+......|++|.|+.+| ++.++.+++.
T Consensus 228 a~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~ 306 (458)
T 3nmz_A 228 TFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKS 306 (458)
T ss_dssp HTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHH
T ss_pred hCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHH
Confidence 9888777766654 45599999999 6789999999999999999852 2334455679999999975 5678999999
Q ss_pred HHHHHHHhccCCcHHHHHHH-HhCcHHHHHHhcCCCCcc----chhHHHHHHHHhhc---CCchhhHHHHhcCChHHHHH
Q 043676 192 ACWSLSYLADGTNDKIQAVI-EAGVCPRLVELLGHPSPS----VLTPALRTVGNIVT---GDDFQTQCIINHGAVPYLLD 263 (446)
Q Consensus 192 ~~~~l~~l~~~~~~~~~~~~-~~~~~~~l~~ll~~~~~~----~~~~a~~~l~~l~~---~~~~~~~~~~~~~~~~~l~~ 263 (446)
++.+|++++...++....+. ..|+++.|+.+|.+.+.. ++..|+++|.|++. .++..+..+.+.|+++.|+.
T Consensus 307 A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~ 386 (458)
T 3nmz_A 307 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ 386 (458)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHH
Confidence 99999999985544444455 689999999999986653 89999999999997 68888888999999999999
Q ss_pred HhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCC
Q 043676 264 MLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGG 330 (446)
Q Consensus 264 ~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 330 (446)
+|.++ +..++++|+|+|+|++.++++++..+++.|+++.|+++++++++.+++.|+++|.|++...
T Consensus 387 LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 387 HLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99998 8899999999999999888999999999999999999999999999999999999999763
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=290.07 Aligned_cols=403 Identities=17% Similarity=0.160 Sum_probs=345.4
Q ss_pred CChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676 2 GSFPALVAGVWSD-DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN 80 (446)
Q Consensus 2 ~~i~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 80 (446)
|.++.|++.|.++ ++.++..|+.+|.+++.. .+....+.+.|+++.|++++++++ +.++..|+++|.+++...+..
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~ 132 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 132 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence 3588999999865 899999999999987765 457778889999999999999998 899999999999999866778
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676 81 TNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR 160 (446)
Q Consensus 81 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 160 (446)
+..+.+.|+++.|+++|+++++.++..++.+|.+++..+++.+..+.+.|+++.|+.++........+..++.+|.+++.
T Consensus 133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999988888899999999999999999666667888999999999998
Q ss_pred CCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHH
Q 043676 161 GKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240 (446)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~ 240 (446)
....+......++++.++.++.+.+..++..++++|.+++...+... ...++++.|+.++.+.++.++..|+++|++
T Consensus 213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~---~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN 289 (644)
T ss_dssp CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCC---SCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhh---hhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 76555555667899999999999999999999999999997644311 112789999999999999999999999999
Q ss_pred hhcCCchhhHHHHhcCChHHHHHHhccCch-HHHHHHHHHHHHHHhcCCH---HHHHHHHHcCChHHHHHHHhcCC-cch
Q 043676 241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHE-EIIKKEISWIISNITAGNR---EQIQAVIDAGLIRPIVNLLQNAE-FDT 315 (446)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~v~~~a~~~l~~l~~~~~---~~~~~~~~~~~i~~L~~ll~~~~-~~v 315 (446)
|+..++..+..+.+.|+++.|+.++.+..+ ..++..|+++|+|++..++ .....+.+.|+++.|++++.+.+ +.+
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v 369 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence 999888888888999999999999987423 7999999999999987432 23344778899999999999875 699
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCC----------------------HHHHHHHHHHHHHHHHhh
Q 043676 316 KKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSD----------------------PEIVTVCLIGLENILKVG 373 (446)
Q Consensus 316 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~----------------------~~~~~~~~~~l~~l~~~~ 373 (446)
++.|+++|+|++.. ++....+.+.|+++.|++++.+.+ .+++..++.+|.+++...
T Consensus 370 ~~~a~~~L~nLa~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~ 447 (644)
T 2z6h_A 370 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 447 (644)
T ss_dssp HHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHccC--HHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH
Confidence 99999999999875 344577889999999999997643 456667778888777544
Q ss_pred hhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043676 374 EAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWC 426 (446)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 426 (446)
. .+..+.+.|+++.|..++.+++++++..|.+++.++..
T Consensus 448 ~--------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 448 H--------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp H--------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred H--------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 2 25778899999999999999999999999999888764
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=7.6e-35 Score=288.88 Aligned_cols=403 Identities=17% Similarity=0.166 Sum_probs=342.9
Q ss_pred CChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676 2 GSFPALVAGVWSD-DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN 80 (446)
Q Consensus 2 ~~i~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 80 (446)
+.++.|++.|.++ ++.++..|+.+|.+++.. ......+.+.|+++.|+++|++++ +.++..|+++|.+++...++.
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 3578899999854 899999999999997775 455777888999999999999998 899999999999999876788
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676 81 TNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR 160 (446)
Q Consensus 81 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 160 (446)
+..+.+.|+++.|+.+|.+++..++..++.+|.+++..+++.+..+.+.|+++.++.++........+..++.+|.+++.
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 348 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 88888999999999999999999999999999999988888899999999999999999655566677889999999997
Q ss_pred CCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHH
Q 043676 161 GKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240 (446)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~ 240 (446)
...........++++.|+.++.+.+..++..+++++.+++....... ...++++.|+.++.+.++.++..|+++|++
T Consensus 349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~---~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhh---hhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 65444555567899999999999999999999999999997654311 113688999999999999999999999999
Q ss_pred hhcCCchhhHHHHhcCChHHHHHHhccCch-HHHHHHHHHHHHHHhcCCHH---HHHHHHHcCChHHHHHHHhcCCc-ch
Q 043676 241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHE-EIIKKEISWIISNITAGNRE---QIQAVIDAGLIRPIVNLLQNAEF-DT 315 (446)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~v~~~a~~~l~~l~~~~~~---~~~~~~~~~~i~~L~~ll~~~~~-~v 315 (446)
|+.+++..+..+.+.++++.|+.++.+..+ ..++..|+++|+|++..+++ .+..+.+.++++.|++++.+.+. .+
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v 505 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 505 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence 999888888888899999999999986413 48999999999999874332 24567788999999999998875 99
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCC----------------------HHHHHHHHHHHHHHHHhh
Q 043676 316 KKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSD----------------------PEIVTVCLIGLENILKVG 373 (446)
Q Consensus 316 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~----------------------~~~~~~~~~~l~~l~~~~ 373 (446)
+..|+++|+|++. .+.....+.+.|+++.|++++.+.+ ++++..++.+|.++....
T Consensus 506 ~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~ 583 (780)
T 2z6g_A 506 IKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI 583 (780)
T ss_dssp HHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh
Confidence 9999999999997 4556678888999999999997644 346667778888776432
Q ss_pred hhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043676 374 EAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWC 426 (446)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 426 (446)
. .+..+.+.|+++.|..++.+++++++..|..+|.++..
T Consensus 584 -~-------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 622 (780)
T 2z6g_A 584 -H-------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 622 (780)
T ss_dssp -H-------------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred -h-------------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 2 25778899999999999999999999999999888753
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=1.8e-31 Score=237.64 Aligned_cols=269 Identities=18% Similarity=0.169 Sum_probs=234.8
Q ss_pred hHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 043676 60 PQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS-----------PSDDVREQAVWALGNVAGDSPRCRDLVLS 128 (446)
Q Consensus 60 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-----------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 128 (446)
...+..|+++|.|++. ++++|..+++.|+++.|+.+|.. .++.+++.|+|+|.|++..++..+..+..
T Consensus 46 ~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3556689999999998 68999999999999999999942 24789999999999999888777777755
Q ss_pred c-CChHHHHHHhccccchhHHHHHHHHHHHhhcCC--CCCChhhhhhhHHHHHHhh-cCCCHhHHHHHHHHHHHhccCCc
Q 043676 129 Q-GALIPLLAELNEHAKLSMLRNATRTLSNFCRGK--PEPPFDQVRPALPALAQLV-HSNDEDVLTYACWSLSYLADGTN 204 (446)
Q Consensus 129 ~-~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~l~~ll-~~~~~~v~~~~~~~l~~l~~~~~ 204 (446)
. |+++.|+.+| .+.+++++..++|+|.+|+... ..+......|++|.|+.+| ++.++++++.++.+|++++...+
T Consensus 125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 4 5599999999 6788999999999999999852 2344455679999999975 66789999999999999998665
Q ss_pred HHHHHHH-HhCcHHHHHHhcCCCCc----cchhHHHHHHHHhhc---CCchhhHHHHhcCChHHHHHHhccCchHHHHHH
Q 043676 205 DKIQAVI-EAGVCPRLVELLGHPSP----SVLTPALRTVGNIVT---GDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKE 276 (446)
Q Consensus 205 ~~~~~~~-~~~~~~~l~~ll~~~~~----~~~~~a~~~l~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~ 276 (446)
+....+. ..|+++.|+.++.++++ .++..|+++|.|++. .+++.+..+.+.|+++.|+.+|.++ +..+++.
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence 5555565 68999999999998655 389999999999997 6888888899999999999999998 8899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCC
Q 043676 277 ISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGT 331 (446)
Q Consensus 277 a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 331 (446)
|+|+|+|++.++++++..+.+.|+++.|+++++++++.+++.|+++|.+++....
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999999988889999999999999999999999999999999999999998743
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.98 E-value=1.1e-30 Score=232.70 Aligned_cols=275 Identities=19% Similarity=0.197 Sum_probs=237.7
Q ss_pred CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc----------ccchhHHHHHHHHHHHhhcCCC-CCChh
Q 043676 100 PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE----------HAKLSMLRNATRTLSNFCRGKP-EPPFD 168 (446)
Q Consensus 100 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~----------~~~~~~~~~a~~~L~~l~~~~~-~~~~~ 168 (446)
+....+..|+|+|.|++.+ +++|+.+.+.|++++|+.+|.. ..++.+++.++|+|.+++.+.+ .+...
T Consensus 44 ~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i 122 (354)
T 3nmw_A 44 PVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 122 (354)
T ss_dssp GGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4456677899999999966 7899999999999999999942 1346799999999999998863 33333
Q ss_pred h-hhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccC-CcHHHHHHHHhCcHHHHHHhc-CCCCccchhHHHHHHHHhhcCC
Q 043676 169 Q-VRPALPALAQLVHSNDEDVLTYACWSLSYLADG-TNDKIQAVIEAGVCPRLVELL-GHPSPSVLTPALRTVGNIVTGD 245 (446)
Q Consensus 169 ~-~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~l~~ll-~~~~~~~~~~a~~~l~~l~~~~ 245 (446)
. ..|++|.|+.+|+++++++++.++++|.+++.. ++.....+.+.|+++.|+++| ++.+..+++.|+.+|+||+.++
T Consensus 123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence 2 356799999999999999999999999999985 455667788999999999974 5678889999999999999977
Q ss_pred chhhHHHH-hcCChHHHHHHhccCchH---HHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCCcchHHH
Q 043676 246 DFQTQCII-NHGAVPYLLDMLVHNHEE---IIKKEISWIISNITA---GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKE 318 (446)
Q Consensus 246 ~~~~~~~~-~~~~~~~l~~~l~~~~~~---~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~ 318 (446)
+.....+. ..|+++.|+.+|.++.+. .+++.|+++|.|++. ++++.+..+.+.|+++.|+.++++++..+++.
T Consensus 203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 282 (354)
T 3nmw_A 203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 282 (354)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence 66666666 789999999999876232 599999999999986 68889999999999999999999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhh
Q 043676 319 AAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAE 376 (446)
Q Consensus 319 a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~ 376 (446)
|+++|.|++.. +++++..+.+.|+++.|++++.++++.++..++++|.+++...+..
T Consensus 283 A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 283 ACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999864 6888999999999999999999999999999999999999875543
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=3.4e-28 Score=210.14 Aligned_cols=244 Identities=29% Similarity=0.377 Sum_probs=224.4
Q ss_pred CCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676 1 LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN 80 (446)
Q Consensus 1 ~~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 80 (446)
+|.+|.|++.|+++++.++..|+++|.+++... .+....+.+.|+++.|++++++++ +.++..|+++|++++..+++.
T Consensus 1 ~~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~ 78 (252)
T 4hxt_A 1 MNDVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEA 78 (252)
T ss_dssp CCHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHH
T ss_pred CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHH
Confidence 578999999999999999999999999998875 457788889999999999999999 999999999999999977999
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676 81 TNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR 160 (446)
Q Consensus 81 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 160 (446)
+..+.+.|+++.++.+++++++.++..++++|++++...+..+..+.+.|+++.++.++ .+.++.++..++++|.+++.
T Consensus 79 ~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999988888899999999999999999 67889999999999999998
Q ss_pred CCCC-CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHH
Q 043676 161 GKPE-PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVG 239 (446)
Q Consensus 161 ~~~~-~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~ 239 (446)
..+. .......++++.++.++.++++.++..++++|++++...+.....+.+.|+++.|+.++.++++.++..|+++|+
T Consensus 158 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 237 (252)
T 4hxt_A 158 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALE 237 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 7532 234455799999999999999999999999999999988888888999999999999999999999999999999
Q ss_pred HhhcCCch
Q 043676 240 NIVTGDDF 247 (446)
Q Consensus 240 ~l~~~~~~ 247 (446)
+++...+.
T Consensus 238 ~l~~~~~~ 245 (252)
T 4hxt_A 238 NIKSGGWL 245 (252)
T ss_dssp HHHHTCBC
T ss_pred HHHcCCCc
Confidence 99976543
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=7.8e-28 Score=207.86 Aligned_cols=240 Identities=28% Similarity=0.422 Sum_probs=222.5
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676 45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD 124 (446)
Q Consensus 45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~ 124 (446)
+.++.|+++|.+++ ++++..|+++|.+++..+++.+..+.+.|+++.|+++++++++.++..++++|++++...+..+.
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 56899999999999 99999999999999997888999999999999999999999999999999999999988888999
Q ss_pred HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC
Q 043676 125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGT 203 (446)
Q Consensus 125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~ 203 (446)
.+.+.|+++.++.++ .++++.++..++++|.+++... .........++++.++.++.++++.++..++++|++++...
T Consensus 81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6788999999999999999654 33444455789999999999999999999999999999988
Q ss_pred cHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHH
Q 043676 204 NDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISN 283 (446)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~ 283 (446)
+.....+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+.+.|+++.++.++.++ ++.++..|+++|+|
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 88878899999999999999999999999999999999998888888899999999999999998 89999999999999
Q ss_pred HhcC
Q 043676 284 ITAG 287 (446)
Q Consensus 284 l~~~ 287 (446)
++..
T Consensus 239 l~~~ 242 (252)
T 4hxt_A 239 IKSG 242 (252)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9864
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.96 E-value=4.8e-28 Score=209.07 Aligned_cols=239 Identities=36% Similarity=0.516 Sum_probs=217.3
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT 81 (446)
Q Consensus 2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 81 (446)
..++.+++.|+++|+.++..|++.|+++++.. .+....+.+.|+++.|+++|++++ +.++..|+++|++++.++++.+
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence 35789999999999999999999998887763 667788999999999999999999 9999999999999999889999
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676 82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG 161 (446)
Q Consensus 82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 161 (446)
..+.+.|+++.|+.+|+++++.++..|+++|+|++...+.....+.+.|+++.++.++ .+.++.++..++++|.+++..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999987776548888999999999999 677899999999999999987
Q ss_pred CC-CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHH
Q 043676 162 KP-EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240 (446)
Q Consensus 162 ~~-~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~ 240 (446)
.+ ........++++.|+.++.++++.++..++++|++++...+.....+.+.|+++.|+.++.++++.++..|+++|++
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 52 22333457999999999999999999999999999998888888889999999999999999999999999999999
Q ss_pred hhc
Q 043676 241 IVT 243 (446)
Q Consensus 241 l~~ 243 (446)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 975
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.96 E-value=5.7e-28 Score=208.57 Aligned_cols=239 Identities=36% Similarity=0.521 Sum_probs=220.6
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676 45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD 124 (446)
Q Consensus 45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~ 124 (446)
...+.+.+.|++++ ++++..|+++|.++...+++.+..+++.|+++.|+++|+++++.++..++++|++++...+..+.
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 46899999999999 89999999999887765778888999999999999999999999999999999999988888999
Q ss_pred HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC-ChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC
Q 043676 125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEP-PFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGT 203 (446)
Q Consensus 125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~ 203 (446)
.+.+.|+++.++.++ .++++.++..++++|.+++.+.+.. ......+++|.++.++.++++.++..++++|++++...
T Consensus 91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6688999999999999999887544 45566799999999999999999999999999999988
Q ss_pred cHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHH
Q 043676 204 NDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISN 283 (446)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~ 283 (446)
+.....+.+.|+++.|+.++.++++.++..|+++|++++..++.....+.+.|+++.++.++.++ ++.++..|+++|+|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999999988888888899999999999999998 89999999999999
Q ss_pred Hhc
Q 043676 284 ITA 286 (446)
Q Consensus 284 l~~ 286 (446)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 964
No 31
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.8e-25 Score=211.96 Aligned_cols=397 Identities=15% Similarity=0.134 Sum_probs=296.6
Q ss_pred hHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 4 FPALVAGVWSD-DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 4 i~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
.+.+.+.+++. +..+....++.|. .++. ...++..+..+.++.|.+.+++ ..++..|+-+|+.+.........
T Consensus 257 ~~~l~~~~~~~~~~~~~~a~L~lLs-aACi--~~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~~~ 330 (778)
T 3opb_A 257 SKLFKKRVFEEQDLQFTKELLRLLS-SACI--DETMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLTCI 330 (778)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHH-HHCC--SHHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCTTC
T ss_pred HHHHHHHHhcccchHHHHHHHHHHH-HHhC--CcHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCCcC
Confidence 45666677554 4555555555554 5665 4555666677889999999965 47899999999998863222111
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHH-cCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLS-QGALIPLLAELNEHAKLSMLRNATRTLSNFCRG 161 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 161 (446)
.+. ...+.+.++|.+++.+-+..|++.|..++.+.. .++.+.+ .+++..|+.++....+..+...++.+|.|++..
T Consensus 331 si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~-VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~ 407 (778)
T 3opb_A 331 NLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKAS-VKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTL 407 (778)
T ss_dssp CHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSH-HHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCC
T ss_pred cHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHH-HHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Confidence 111 245677788888777779999999999996554 5555554 455999999995456788999999999999986
Q ss_pred CCCC---------------------------------------ChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccC
Q 043676 162 KPEP---------------------------------------PFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADG 202 (446)
Q Consensus 162 ~~~~---------------------------------------~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~ 202 (446)
.+.. ......|++|.|+.++.++++.+++.++++|.+++..
T Consensus 408 ~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d 487 (778)
T 3opb_A 408 PEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS 487 (778)
T ss_dssp CCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS
T ss_pred CcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 5321 0112268899999999999999999999999999976
Q ss_pred CcHHHHHHHHhCcHHHHHHhcCCCCcc---chhHHHHHHHHhhcCCchhhHHHHh----cCChHHHHHHhcc-CchH---
Q 043676 203 TNDKIQAVIEAGVCPRLVELLGHPSPS---VLTPALRTVGNIVTGDDFQTQCIIN----HGAVPYLLDMLVH-NHEE--- 271 (446)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~ll~~~~~~---~~~~a~~~l~~l~~~~~~~~~~~~~----~~~~~~l~~~l~~-~~~~--- 271 (446)
+.....+++.|+++.|+.++.+.... .+..|+.+|++++....... ++. .+++++|+.+|.. +...
T Consensus 488 -~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~ 564 (778)
T 3opb_A 488 -KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNP 564 (778)
T ss_dssp -GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC
T ss_pred -HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCccccc
Confidence 44566688999999999999987544 78999999999985443221 121 3789999999983 2111
Q ss_pred ---------HHHHHHHHHHHHHhcCC----HHHHHHHHHc-CChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHH-H
Q 043676 272 ---------IIKKEISWIISNITAGN----REQIQAVIDA-GLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQI-K 336 (446)
Q Consensus 272 ---------~v~~~a~~~l~~l~~~~----~~~~~~~~~~-~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~-~ 336 (446)
.-+.+|+.+|+|++..+ ++.+..+++. |+++.|.+++.+++..+++.|+++++|++.. ++.+ .
T Consensus 565 l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~--~e~i~~ 642 (778)
T 3opb_A 565 LHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH--PLTIAA 642 (778)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS--GGGTGG
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC--cHHHHH
Confidence 22779999999999864 3456778874 9999999999999999999999999999973 4432 2
Q ss_pred HHHHc------CChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcC--
Q 043676 337 HLVRE------GCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSH-- 408 (446)
Q Consensus 337 ~l~~~------~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~-- 408 (446)
.+... +.++.|+.+++.+|.+++..|.++|.++....+... ...+...++++.+..+..+
T Consensus 643 k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia------------~~ll~~~~gi~~Ll~lL~~~~ 710 (778)
T 3opb_A 643 KFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIA------------KELLTKKELIENAIQVFADQI 710 (778)
T ss_dssp GTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHH------------HHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHH------------HHHHHccccHHHHHHHHhccC
Confidence 32221 137889999999999999999999999865444421 3444445899998888777
Q ss_pred CCHHHHHHHHHHHHHhcC
Q 043676 409 DNNEIHEKSVKIFKTYWC 426 (446)
Q Consensus 409 ~~~~v~~~a~~~l~~~~~ 426 (446)
++++++.++..++.++++
T Consensus 711 ~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 711 DDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp TCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 899999999999999986
No 32
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.95 E-value=5.1e-26 Score=197.11 Aligned_cols=237 Identities=15% Similarity=0.134 Sum_probs=197.7
Q ss_pred HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHH-hcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHH
Q 043676 186 EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVE-LLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDM 264 (446)
Q Consensus 186 ~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~-ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~ 264 (446)
.+-+..++..|.+++...+ ....+.+.|+++.++. +|.++++.++..|+++|++++..++..++.+++.|+++.|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4567888999999998654 5556888999999999 9999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCCh
Q 043676 265 LVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCV 344 (446)
Q Consensus 265 l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i 344 (446)
|+++.+..++..|+|+|+|++.+++...+.+.+.|+++.|+.+++++++.++..|+|+|++++.. +++.+..+.+.|++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence 98643788999999999999998888888899999999999999999999999999999999876 56788899999999
Q ss_pred HHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCC-CHHHHHHHHHHHHH
Q 043676 345 KPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHD-NNEIHEKSVKIFKT 423 (446)
Q Consensus 345 ~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~ 423 (446)
+.|+.+|.+++++++..++.+|.+++...+....... ...+.+...+.+ .++.++.++ +.++++++..++++
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~--~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~ 284 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQT 284 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH--CGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh--ccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987543321000 001224445543 266777666 78999999999999
Q ss_pred hcCCCCCc
Q 043676 424 YWCGRNEE 431 (446)
Q Consensus 424 ~~~~~~~~ 431 (446)
||..++++
T Consensus 285 ~f~~~~~~ 292 (296)
T 1xqr_A 285 CFSSPADD 292 (296)
T ss_dssp HCC-----
T ss_pred HcCCCCCc
Confidence 99876554
No 33
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=7.3e-25 Score=207.83 Aligned_cols=358 Identities=14% Similarity=0.126 Sum_probs=281.9
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV 83 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 83 (446)
++-|.+.+++ ..++..|+-.|+++........ ..+. ...+.+.+.+.+++ .+.+..|++.|.-++. +++.+..
T Consensus 298 ~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~-~si~--~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl-~~~VKe~ 370 (778)
T 3opb_A 298 LQLLERSLNV--EDVQIYSALVLVKTWSFTKLTC-INLK--QLSEIFINAISRRI-VPKVEMSVEALAYLSL-KASVKIM 370 (778)
T ss_dssp HHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTT-CCHH--HHHHHHHHHTTTCC-HHHHHHHHHHHHHHTT-SSHHHHH
T ss_pred HHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCc-CcHH--HHHHHHHHHHhcCC-ccHHHHHHHHHHHHhC-CHHHHHH
Confidence 4556666765 4788899999999876542211 1111 26777888888877 5679999999999998 7888888
Q ss_pred HHhc-CChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChH--------------------------------------HH
Q 043676 84 VIDH-GAVPIFVKLLSS-PSDDVREQAVWALGNVAGDSPR--------------------------------------CR 123 (446)
Q Consensus 84 ~~~~-~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~--------------------------------------~~ 123 (446)
+.+. ++++.|++++++ .+..+...++.++.|++...+. .+
T Consensus 371 L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~ 450 (778)
T 3opb_A 371 IRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNE 450 (778)
T ss_dssp HHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHH
Confidence 8865 669999999995 7788999999999999963321 34
Q ss_pred HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHh---HHHHHHHHHHHhc
Q 043676 124 DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDED---VLTYACWSLSYLA 200 (446)
Q Consensus 124 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~---v~~~~~~~l~~l~ 200 (446)
..+.+.|+++.|+.++ .+.++.++..++|+|.+++.+...+......|+++.|+.++.+.... .+..|+.+|.++.
T Consensus 451 ~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLl 529 (778)
T 3opb_A 451 KYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRML 529 (778)
T ss_dssp HHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence 5667889999999999 77899999999999999998877777777789999999999987544 8999999999998
Q ss_pred cCCcHHHHHHHH---hCcHHHHHHhcCC-CCcc-------------chhHHHHHHHHhhcCCc----hhhHHHHhc-CCh
Q 043676 201 DGTNDKIQAVIE---AGVCPRLVELLGH-PSPS-------------VLTPALRTVGNIVTGDD----FQTQCIINH-GAV 258 (446)
Q Consensus 201 ~~~~~~~~~~~~---~~~~~~l~~ll~~-~~~~-------------~~~~a~~~l~~l~~~~~----~~~~~~~~~-~~~ 258 (446)
........ +-. .|+++.|+.+|.. +... -+..|+.+|.||+..++ +.+..+++. |++
T Consensus 530 is~np~~~-f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~ 608 (778)
T 3opb_A 530 IFTNPGLI-FKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYW 608 (778)
T ss_dssp HTSCHHHH-SSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHH
T ss_pred hcCCHHHH-cCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHH
Confidence 55443321 111 3889999999983 2211 16689999999999762 345667775 899
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHH-HHHHHc------CChHHHHHHHhcCCcchHHHHHHHHHHhccCCC
Q 043676 259 PYLLDMLVHNHEEIIKKEISWIISNITAGNREQI-QAVIDA------GLIRPIVNLLQNAEFDTKKEAAWAISNATSGGT 331 (446)
Q Consensus 259 ~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~-~~~~~~------~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 331 (446)
+.+..++.++ +..+|..|+++++|++.. ++.+ +.+.+. +.++.|+.+++.++.++|..|+++|.+++.. .
T Consensus 609 ~~L~~LL~s~-n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~-~ 685 (778)
T 3opb_A 609 STIENLMLDE-NVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT-I 685 (778)
T ss_dssp HHHHHGGGCS-SHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH-C
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-C
Confidence 9999999988 889999999999999864 4443 233321 2378999999999999999999999999644 4
Q ss_pred HHHHHHHHHc-CChHHHHhcccC--CCHHHHHHHHHHHHHHHHhh
Q 043676 332 QEQIKHLVRE-GCVKPLCDLLLC--SDPEIVTVCLIGLENILKVG 373 (446)
Q Consensus 332 ~~~~~~l~~~-~~i~~L~~ll~~--~~~~~~~~~~~~l~~l~~~~ 373 (446)
+..+..+.+. ++++.+++++++ ++++++.+++-++.+++...
T Consensus 686 ~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 686 PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 6667777776 789999999998 89999999999999999754
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.93 E-value=5.9e-24 Score=177.91 Aligned_cols=199 Identities=38% Similarity=0.560 Sum_probs=185.4
Q ss_pred hhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhh
Q 043676 170 VRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQT 249 (446)
Q Consensus 170 ~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~ 249 (446)
..+..+.+..+++++++.++..++++|.+++..++.....+.+.|+++.|+.+|.++++.++..|+++|++++.+++...
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 35778999999999999999999999999998888888889999999999999999999999999999999998888888
Q ss_pred HHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccC
Q 043676 250 QCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSG 329 (446)
Q Consensus 250 ~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 329 (446)
..+++.|+++.++.++.++ ++.++..|+|+|+|++.++++....+.+.|+++.|+++++++++.++..|+++|.+++..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 8899999999999999999 999999999999999988888888899999999999999999999999999999999985
Q ss_pred CCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHH
Q 043676 330 GTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENIL 370 (446)
Q Consensus 330 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~ 370 (446)
+++....+.+.|+++.|.+++.+++++++..++++|.++.
T Consensus 169 -~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 169 -GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp -CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred -CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 5778888899999999999999999999999999999875
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.92 E-value=1.2e-23 Score=176.09 Aligned_cols=199 Identities=35% Similarity=0.479 Sum_probs=181.7
Q ss_pred hcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHH
Q 043676 43 QSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC 122 (446)
Q Consensus 43 ~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~ 122 (446)
..+..+.|..++++++ ++++..|+++|.+++..+++.+..+.+.|+++.|+++|.++++.++..|+++|+|++...+..
T Consensus 10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 3478999999999999 899999999999999878999999999999999999999999999999999999999888888
Q ss_pred HHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC-CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhcc
Q 043676 123 RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP-EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLAD 201 (446)
Q Consensus 123 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~ 201 (446)
+..+.+.|+++.++.++ ++.++.++..++++|.+++...+ ........++++.|+.+++++++.++..++++|.+++.
T Consensus 89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999 77789999999999999998652 22334457899999999999999999999999999999
Q ss_pred CCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676 202 GTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT 243 (446)
Q Consensus 202 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~ 243 (446)
..+.....+.+.|+++.|+.++.++++.++..|+++|.+++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 878888889999999999999999999999999999999985
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.90 E-value=2.3e-22 Score=174.20 Aligned_cols=225 Identities=15% Similarity=0.123 Sum_probs=184.9
Q ss_pred hHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHH
Q 043676 60 PQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVK-LLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAE 138 (446)
Q Consensus 60 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~ 138 (446)
.+-+..|+..|.+++. +.++...+.+.|+++.|+. +|.++++.+++.|+|+|++++.+++.+++.+.+.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 3578889999999998 7778888999999999999 9999999999999999999999999999999999999999999
Q ss_pred hccccchhHHHHHHHHHHHhhcCCCC-CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHH
Q 043676 139 LNEHAKLSMLRNATRTLSNFCRGKPE-PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCP 217 (446)
Q Consensus 139 l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 217 (446)
|..+++..+++.++|+|++++.+.+. .......+++|.|+.++++++..++..++++|.+++...++....+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 95456889999999999999987632 33344578999999999999999999999999999988888888899999999
Q ss_pred HHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhc--CC---hHHHHHHhccC-chHHHHHHHHHHHHHHh
Q 043676 218 RLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINH--GA---VPYLLDMLVHN-HEEIIKKEISWIISNIT 285 (446)
Q Consensus 218 ~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~--~~---~~~l~~~l~~~-~~~~v~~~a~~~l~~l~ 285 (446)
.|+.+|.+++..++..|+.+|++++...+......... .+ +..-.+-++.. ...++.+.+..++.++.
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999998755433322211 11 11223334422 13455566666666664
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.88 E-value=6e-22 Score=163.85 Aligned_cols=197 Identities=18% Similarity=0.154 Sum_probs=170.7
Q ss_pred CHHHHHHhhcCCCCh--HHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHH
Q 043676 46 VVPRFVEFLMREDYP--QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCR 123 (446)
Q Consensus 46 ~~~~L~~ll~~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~ 123 (446)
.+|.++++|.+++ + +++..|++.+.+++..+++.+..+.+.|+++.|+++|+++++++++.|+|+|.||+.++++++
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 5899999999998 6 899999999999998789999999999999999999999999999999999999998888899
Q ss_pred HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc----------------CCCHh
Q 043676 124 DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH----------------SNDED 187 (446)
Q Consensus 124 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~----------------~~~~~ 187 (446)
..+.+.|++++|+++|..+.+.++++.++.+|++|+.....+.. ...+++|.|+.++. ..+++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~-i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNL-MITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHH-HHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHH-HHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999995467899999999999999987644333 33567898887652 13679
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhcCC------CCccchhHHHHHHHHhhcC
Q 043676 188 VLTYACWSLSYLADGTNDKIQAVIEA-GVCPRLVELLGH------PSPSVLTPALRTVGNIVTG 244 (446)
Q Consensus 188 v~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~------~~~~~~~~a~~~l~~l~~~ 244 (446)
+++++..+|.|++..+++..+.+.+. |+++.|+.+++. .+...++.|+.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998776666667765 778999999875 2557889999999999875
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.87 E-value=6.8e-22 Score=163.50 Aligned_cols=196 Identities=16% Similarity=0.189 Sum_probs=166.3
Q ss_pred ChHHHHHhhcCCCH--HHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676 3 SFPALVAGVWSDDN--SLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN 80 (446)
Q Consensus 3 ~i~~l~~~l~s~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 80 (446)
.+|.++++|.++++ +++..|++.+.+++..+ .+....+.+.|++|.|+++|.+++ +++|..|+++|.|++.+++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 58999999999988 89999999999988764 566778899999999999999998 999999999999999988999
Q ss_pred HHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc---------------cccc
Q 043676 81 TNVVIDHGAVPIFVKLLS-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN---------------EHAK 144 (446)
Q Consensus 81 ~~~~~~~~~i~~L~~~L~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~---------------~~~~ 144 (446)
+..+.+.|+++.|+++|. +++.++++.++.+|+|++... ..+..+.+. ++++|+.++. ...+
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHHHHhc-cHHHHHHHHhccccCCcccccccccccch
Confidence 999999999999999998 578999999999999999554 456666664 6888887652 0125
Q ss_pred hhHHHHHHHHHHHhhcCC-CCCChhh-hhhhHHHHHHhhcCC------CHhHHHHHHHHHHHhccC
Q 043676 145 LSMLRNATRTLSNFCRGK-PEPPFDQ-VRPALPALAQLVHSN------DEDVLTYACWSLSYLADG 202 (446)
Q Consensus 145 ~~~~~~a~~~L~~l~~~~-~~~~~~~-~~~~~~~l~~ll~~~------~~~v~~~~~~~l~~l~~~ 202 (446)
+.+++++..+|.||+... ..+..+. ..|+++.|+.+++.. +.+.++.++.+|.||+..
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 689999999999999865 3344343 357889999999842 678999999999999865
No 39
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.84 E-value=3e-19 Score=173.63 Aligned_cols=380 Identities=11% Similarity=0.122 Sum_probs=263.9
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV 83 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 83 (446)
+|.+.+.++++++.+|..|+.+|..++... +. ......++|.+..++.+++ ..+|..++.+|+.++...+. .
T Consensus 205 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~--~~--~~~~~~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---~ 276 (588)
T 1b3u_A 205 IPMFSNLASDEQDSVRLLAVEACVNIAQLL--PQ--EDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---E 276 (588)
T ss_dssp HHHHHHHHTCSCHHHHTTHHHHHHHHHHHS--CH--HHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---H
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHhC--CH--HHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc---c
Confidence 344444444555555555555555444321 10 1112245666667776666 67777777777777651111 1
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-HHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP-RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK 162 (446)
Q Consensus 84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 162 (446)
.....+++.+..+++++++.+|..++++++.++...+ ..+........++.+..++ ++.++.++..++++|..++...
T Consensus 277 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~ 355 (588)
T 1b3u_A 277 ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPIL 355 (588)
T ss_dssp HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHH
T ss_pred cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHh
Confidence 1223567888889999999999999999998885332 1111112234566777777 7788999999999999987642
Q ss_pred CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhh
Q 043676 163 PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV 242 (446)
Q Consensus 163 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~ 242 (446)
.. ......++|.+..+++++++.++..++.++..+....... .....+++.+..++.+.++.+|..++.+++.++
T Consensus 356 ~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~ 430 (588)
T 1b3u_A 356 GK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLA 430 (588)
T ss_dssp CH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred hH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 11 1223567889999999999999999999998887543321 122367888889999999999999999999987
Q ss_pred cCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHH
Q 043676 243 TGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAW 321 (446)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 321 (446)
...... .....+++.+...+.++ +..+|..|+.+++.++.. .++ .....++|.+..++.+.++.+|..+++
T Consensus 431 ~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~----~~~~~llp~l~~~~~~~~~~~R~~a~~ 502 (588)
T 1b3u_A 431 GQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLF 502 (588)
T ss_dssp HHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHHHH
T ss_pred HHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 532211 11223578888889888 899999999999999762 222 122358888888888889999999999
Q ss_pred HHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHH
Q 043676 322 AISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEK 401 (446)
Q Consensus 322 aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 401 (446)
+++.++...+.+ . ....+++.|...+++++++++..+++++..+....+.. +.....++.
T Consensus 503 ~l~~l~~~~~~~---~-~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----------------~~~~~~~p~ 562 (588)
T 1b3u_A 503 CINVLSEVCGQD---I-TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS----------------TLQSEVKPI 562 (588)
T ss_dssp HHHHHHHHHHHH---H-HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH----------------HHHHHHHHH
T ss_pred HHHHHHHhcCHH---H-HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh----------------hhHHHHHHH
Confidence 999997642221 1 22358999999999999999999999999988643221 111344667
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhc
Q 043676 402 IENLQSHDNNEIHEKSVKIFKTYW 425 (446)
Q Consensus 402 l~~l~~~~~~~v~~~a~~~l~~~~ 425 (446)
+..+..+++++++..|..++..+-
T Consensus 563 l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 563 LEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCchhHHHHHHHHHHHhh
Confidence 778889999999999999998764
No 40
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.83 E-value=6.7e-19 Score=171.12 Aligned_cols=381 Identities=10% Similarity=0.066 Sum_probs=285.6
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV 83 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 83 (446)
+|.+.+.++++++.+|..++..|..++... .. ......++|.+..++++++ +.+|..|+.+|+.++...+..
T Consensus 166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~--~~--~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~--- 237 (588)
T 1b3u_A 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVL--EL--DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE--- 237 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTS--CH--HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH---
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--cH--HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH---
Confidence 456667778889999999999999987753 21 1233467899999998888 899999999999988632221
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 043676 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP 163 (446)
Q Consensus 84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 163 (446)
.....+++.+..++.++++.+|..++.+++.++...+. .......++.+..++ +++++.++..++++|..++...+
T Consensus 238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHhC
Confidence 12234688888899999999999999999999843211 112334678888888 67889999999999999988753
Q ss_pred CCCh--hhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHh
Q 043676 164 EPPF--DQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241 (446)
Q Consensus 164 ~~~~--~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l 241 (446)
.... .....++|.+..++++.++.+|..++++++.++..-... .....+++.+..+++++++.+|..++.+++.+
T Consensus 314 ~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l 390 (588)
T 1b3u_A 314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDCV 390 (588)
T ss_dssp TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 3211 345678899999999999999999999999987543321 12236788999999999999999999999888
Q ss_pred hcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHH
Q 043676 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAA 320 (446)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~ 320 (446)
....... .....+++.+..++.+. ++.+|..++.++..++.. ..+ .....+++.+...+.+.++.+|..|+
T Consensus 391 ~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a~ 462 (588)
T 1b3u_A 391 NEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAAT 462 (588)
T ss_dssp HHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred HHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 7643221 12234678888888888 899999999999998751 111 11123678888889888999999999
Q ss_pred HHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHH
Q 043676 321 WAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLE 400 (446)
Q Consensus 321 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 400 (446)
.+++.++....++. ....+++.|..++.++++.++..+++++..+........ .....++
T Consensus 463 ~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~----------------~~~~~~~ 522 (588)
T 1b3u_A 463 SNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI----------------TTKHMLP 522 (588)
T ss_dssp HHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH----------------HHHHTHH
T ss_pred HHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH----------------HHHHHHH
Confidence 99999976533332 123478889999999999999999999999887543321 1134567
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043676 401 KIENLQSHDNNEIHEKSVKIFKTYWCG 427 (446)
Q Consensus 401 ~l~~l~~~~~~~v~~~a~~~l~~~~~~ 427 (446)
.+..+..+++++++..+.+.+..+...
T Consensus 523 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 523 TVLRMAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence 777888899999999999999888753
No 41
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.83 E-value=2.3e-19 Score=181.47 Aligned_cols=353 Identities=15% Similarity=0.154 Sum_probs=257.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHH
Q 043676 5 PALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVV 84 (446)
Q Consensus 5 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 84 (446)
+.+++.|.++++.+|..++.++..++..+..... .++++.|++.+.+++ +.++..++.+|+.++...++....-
T Consensus 93 ~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~~ 166 (852)
T 4fdd_A 93 SECLNNIGDSSPLIRATVGILITTIASKGELQNW-----PDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDSD 166 (852)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----TTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhchh
Confidence 4567778888999999999999999876422111 357999999999988 8999999999999987333221110
Q ss_pred H----hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676 85 I----DHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR 160 (446)
Q Consensus 85 ~----~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 160 (446)
. -..+++.+++++.++++.+|..|++++.++....+...... -...++.+...+ .++++.++..++++|..++.
T Consensus 167 ~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~ 244 (852)
T 4fdd_A 167 VLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALA-GDEEPEVRKNVCRALVMLLE 244 (852)
T ss_dssp SSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHH
Confidence 0 12356777788888999999999999998886544211000 012466677776 67789999999999999998
Q ss_pred CCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHH---hCcHHHHHHhc-----------CC-
Q 043676 161 GKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIE---AGVCPRLVELL-----------GH- 225 (446)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~---~~~~~~l~~ll-----------~~- 225 (446)
..+..-.....++++.+...+.+.++.++..++.++..++...... .... ..+++.++..+ .+
T Consensus 245 ~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~--~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~ 322 (852)
T 4fdd_A 245 VRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICK--DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDV 322 (852)
T ss_dssp HCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHH--HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--
T ss_pred hCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHH--HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCc
Confidence 7643222334678888889999999999999999999998754311 1111 14566666666 33
Q ss_pred ----------CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHH
Q 043676 226 ----------PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAV 295 (446)
Q Consensus 226 ----------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 295 (446)
.++.+|..|..++..++...+... + ..+++.+...+.++ ++.+|..|++++++++.+..+.....
T Consensus 323 ~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~---~-~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~ 397 (852)
T 4fdd_A 323 EGGSGGDDTISDWNLRKCSAAALDVLANVYRDEL---L-PHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPY 397 (852)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHHHGGGG---H-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGG
T ss_pred ccccccccccccchHHHHHHHHHHHHHHhccHHH---H-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 345678899999999986443321 1 23677888888888 89999999999999998766544433
Q ss_pred HHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHH-HHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhh
Q 043676 296 IDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQE-QIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGE 374 (446)
Q Consensus 296 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~ 374 (446)
. .++++.++..+++.++.+|..|++++++++....+. ...+ -.++++.|.+.+.++++.++..++++|.++++...
T Consensus 398 l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 398 L-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG
T ss_pred H-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 3 368899999999999999999999999997631110 0011 12367888888888999999999999999987655
Q ss_pred h
Q 043676 375 A 375 (446)
Q Consensus 375 ~ 375 (446)
.
T Consensus 475 ~ 475 (852)
T 4fdd_A 475 T 475 (852)
T ss_dssp G
T ss_pred H
Confidence 4
No 42
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.82 E-value=2.2e-19 Score=181.61 Aligned_cols=397 Identities=11% Similarity=0.102 Sum_probs=263.8
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV 83 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 83 (446)
+|.+++.++++++.+|..|++++..+.... .......-..+++.+..++.+++ +++|..|+++|..++...++....
T Consensus 176 l~~l~~~l~~~~~~vR~~A~~aL~~~~~~~--~~~~~~~~~~~l~~l~~~~~d~~-~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 176 IPKFLQFFKHSSPKIRSHAVACVNQFIISR--TQALMLHIDSFIENLFALAGDEE-PEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HHHHTTTTTCSSHHHHHHHHHHHHTTTTTT--CHHHHTSHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHhCHHHHHH
Confidence 567788888999999999999999877642 21111111246788888888888 899999999999999855543222
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHH--cCChHHHHHHhc----------cc---------
Q 043676 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLS--QGALIPLLAELN----------EH--------- 142 (446)
Q Consensus 84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~i~~l~~~l~----------~~--------- 142 (446)
.++ ++++.+...+.+.++.++..|++++..++.... .+..+.. ...++.++..+. .+
T Consensus 253 ~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~-~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd 330 (852)
T 4fdd_A 253 HMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPI-CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDD 330 (852)
T ss_dssp GHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC----------
T ss_pred HHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccc
Confidence 222 467888889999999999999999999985432 2222110 123455555551 12
Q ss_pred --cchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHH
Q 043676 143 --AKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLV 220 (446)
Q Consensus 143 --~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~ 220 (446)
.+..++..+..+|..++...+ ......++|.+..++.++++.+|..++++++.++........... .++++.++
T Consensus 331 ~~~~~~vr~~a~~~L~~la~~~~---~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~ 406 (852)
T 4fdd_A 331 TISDWNLRKCSAAALDVLANVYR---DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLI 406 (852)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHH
Confidence 223568889999998887643 134467888888999999999999999999999988765443322 37889999
Q ss_pred HhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 043676 221 ELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGL 300 (446)
Q Consensus 221 ~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 300 (446)
..+.++++.+|..|++++++++...........-..+++.++..+.++ ++.+|..|++++.+++........... .++
T Consensus 407 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~~~~l~~~l-~~l 484 (852)
T 4fdd_A 407 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEACTELVPYL-AYI 484 (852)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGGGGGGH-HHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhhHhhHhHH-HHH
Confidence 999999999999999999999864221110111224678888888888 899999999999999853211111111 135
Q ss_pred hHHHHHHHhcCCcchHHHHHHHHHHhc---------------------------------------------cCCCHHHH
Q 043676 301 IRPIVNLLQNAEFDTKKEAAWAISNAT---------------------------------------------SGGTQEQI 335 (446)
Q Consensus 301 i~~L~~ll~~~~~~v~~~a~~aL~~l~---------------------------------------------~~~~~~~~ 335 (446)
++.|+..++..+......++.++..++ ........
T Consensus 485 l~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~ 564 (852)
T 4fdd_A 485 LDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFL 564 (852)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHH
Confidence 555555555443333333333333332 21111111
Q ss_pred HHHHHcCChHHHHhcc-----------------cCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhCh
Q 043676 336 KHLVREGCVKPLCDLL-----------------LCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGG 398 (446)
Q Consensus 336 ~~l~~~~~i~~L~~ll-----------------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 398 (446)
.++-. +++.++..+ +.++.+++..+++.+..++...+.. +...+...+.
T Consensus 565 ~~~~~--i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~------------~~~~~~~~~~ 630 (852)
T 4fdd_A 565 PYCEP--VYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGN------------IEQLVARSNI 630 (852)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGG------------GHHHHHTCCH
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHh------------HHHHhcCCcH
Confidence 11000 112122222 1235678888899999888765543 3455556788
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043676 399 LEKIENLQSHDNNEIHEKSVKIFKTYW 425 (446)
Q Consensus 399 ~~~l~~l~~~~~~~v~~~a~~~l~~~~ 425 (446)
++.+..+..++++++++.+..++..+.
T Consensus 631 ~~~l~~~l~~~~~~vr~~a~~~l~~l~ 657 (852)
T 4fdd_A 631 LTLMYQCMQDKMPEVRQSSFALLGDLT 657 (852)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 888888888888999999888888764
No 43
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.81 E-value=1.7e-16 Score=146.89 Aligned_cols=415 Identities=13% Similarity=0.152 Sum_probs=301.3
Q ss_pred ChHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCCCC----------------cHHHH-HhcCCHHHHHHhhcCCCChHHH
Q 043676 3 SFPALVAGVWS--DDNSLQLEATTLSRKLLSFDRNP----------------PIEKV-IQSGVVPRFVEFLMREDYPQLQ 63 (446)
Q Consensus 3 ~i~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~----------------~~~~~-~~~~~~~~L~~ll~~~~~~~~~ 63 (446)
+++.|+..|+. +|.+....++..|.++.+.+..+ ..+.+ .+.+.++.|+.+|++.+ ..+|
T Consensus 61 ~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~vR 139 (651)
T 3grl_A 61 AMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHVR 139 (651)
T ss_dssp THHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHHH
T ss_pred hHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHHH
Confidence 68899999985 57888889999998887754221 11223 34578999999999998 8999
Q ss_pred HHHHHHHHHHcCCChh-hHHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc
Q 043676 64 YEAAWVLINIASGTSE-NTNVVID-HGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE 141 (446)
Q Consensus 64 ~~a~~~L~~l~~~~~~-~~~~~~~-~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~ 141 (446)
..++.+|..++...++ ..+.+.. .++++.|+.+|.++.+.+|..++.+|.+++.++++.++.+...|+++.+++++..
T Consensus 140 ~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~ 219 (651)
T 3grl_A 140 WPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITE 219 (651)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHh
Confidence 9999999999986766 6777774 4999999999999999999999999999999999999999999999999999954
Q ss_pred cc---chhHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCCCH------hHHHH---HHHHHHHhccCC-----
Q 043676 142 HA---KLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHSNDE------DVLTY---ACWSLSYLADGT----- 203 (446)
Q Consensus 142 ~~---~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~------~v~~~---~~~~l~~l~~~~----- 203 (446)
.. ...+...++.++.+|.+.. .+.......++++.|..++..+++ ....+ ++.++.-++...
T Consensus 220 Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~ 299 (651)
T 3grl_A 220 EGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGA 299 (651)
T ss_dssp HTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHH
T ss_pred cCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 33 2367899999999999997 355666668999999999975432 23333 566666666542
Q ss_pred -cHHHHHHHHhCcHHHHHHhcCCC--CccchhHHHHHHHHhhcCCchhhHHHHhcC---------ChHHHHHHhccCchH
Q 043676 204 -NDKIQAVIEAGVCPRLVELLGHP--SPSVLTPALRTVGNIVTGDDFQTQCIINHG---------AVPYLLDMLVHNHEE 271 (446)
Q Consensus 204 -~~~~~~~~~~~~~~~l~~ll~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~---------~~~~l~~~l~~~~~~ 271 (446)
......+.+.|+++.+++++... ...++..|+.+++.+..+++.....+.+.. ++..++.++.+....
T Consensus 300 t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~ 379 (651)
T 3grl_A 300 TSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPF 379 (651)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCH
T ss_pred CHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccH
Confidence 23455688999999999998875 556888999999999999988777766432 333445556555468
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHc----------CCh---HHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHH
Q 043676 272 IIKKEISWIISNITAGNREQIQAVIDA----------GLI---RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHL 338 (446)
Q Consensus 272 ~v~~~a~~~l~~l~~~~~~~~~~~~~~----------~~i---~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l 338 (446)
.+|.+|+.++..+..++++....+... +.+ ..+..-+-+.|+.--..|+.++.++... +++....+
T Consensus 380 ~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~-n~~~K~~~ 458 (651)
T 3grl_A 380 VLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE-NATQKEQL 458 (651)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 899999999999998888766666542 111 1244455556665556688888888765 45554443
Q ss_pred HH--------cCC---hHHHHhcccC-CCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhh
Q 043676 339 VR--------EGC---VKPLCDLLLC-SDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQ 406 (446)
Q Consensus 339 ~~--------~~~---i~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~ 406 (446)
.. +.. ++.+...|.. .++.++..-+-.|..++..++.. ...++.+...++.|....
T Consensus 459 l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~A------------V~dFL~~~s~l~~L~~~i 526 (651)
T 3grl_A 459 LRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIA------------VTHFLHNSANVPFLTGQI 526 (651)
T ss_dssp TTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHH------------HHHHHHSTTHHHHHHHHH
T ss_pred HhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHH------------HHHHHcCCchHHHHHHHH
Confidence 33 111 4444555543 45666666666677666655554 467777777788877655
Q ss_pred cC-CC---HHHHHHHHHHHHHhcCCCCCc
Q 043676 407 SH-DN---NEIHEKSVKIFKTYWCGRNEE 431 (446)
Q Consensus 407 ~~-~~---~~v~~~a~~~l~~~~~~~~~~ 431 (446)
.+ .. .-++-.+.-+|..+|+-.+++
T Consensus 527 ~~~~~~~~~lvqGL~a~LLGi~yef~~~~ 555 (651)
T 3grl_A 527 AENLGEEEQLVQGLCALLLGISIYFNDNS 555 (651)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred HhccCcchHHHHHHHHHHHHHHhhccCCC
Confidence 33 22 336788888888776644433
No 44
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.80 E-value=1.1e-16 Score=154.45 Aligned_cols=375 Identities=17% Similarity=0.177 Sum_probs=262.1
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
.++.+++.+.+++..++..+...+..++... + +.. .-+++.+.+-+++++ +.+|..|+++|+++.. ++...
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~--e~~--~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~~ 120 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ--P--DMA--IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKITE 120 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS--H--HHH--HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC--c--hHH--HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHHH
Confidence 3566778888888888888777777765531 1 111 135778888889888 8999999999999864 44444
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK 162 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 162 (446)
.+ ++.+.+++.++++.+|..|+.++.+++...++. +...+.++.+..++ .+.++.++..|+++|..++...
T Consensus 121 ~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 121 YL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISESH 191 (591)
T ss_dssp HH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSC
T ss_pred HH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhC
Confidence 33 577899999999999999999999999755542 22235677888888 6889999999999999999886
Q ss_pred CCC-ChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHh
Q 043676 163 PEP-PFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241 (446)
Q Consensus 163 ~~~-~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l 241 (446)
+.. ........++.++..+.+.++..+..++.++..++..++.... .+++.+..++++.++.++..|++++..+
T Consensus 192 ~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 192 PNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKF 266 (591)
T ss_dssp CSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred CCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 533 3334456678888888888999999999999988865543332 5678888899999999999999999998
Q ss_pred hcC---CchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHH------------------HHH----HHH
Q 043676 242 VTG---DDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNRE------------------QIQ----AVI 296 (446)
Q Consensus 242 ~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~------------------~~~----~~~ 296 (446)
... +++....+. ..+.+.++.++. + ++.+|..|+.++..+....++ .+. .+.
T Consensus 267 ~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~ 343 (591)
T 2vgl_B 267 LELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMI 343 (591)
T ss_dssp CCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHH
T ss_pred hhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHH
Confidence 742 333333222 234566665553 5 677888888877777641110 000 111
Q ss_pred ---Hc----CChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHH
Q 043676 297 ---DA----GLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENI 369 (446)
Q Consensus 297 ---~~----~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l 369 (446)
+. .+++.|...+.+.+.+++..++++++.++... +..... +++.|.+++.+..+.++..++.++..+
T Consensus 344 ~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~-~~~~~~-----~v~~Ll~ll~~~~~~v~~e~i~~l~~i 417 (591)
T 2vgl_B 344 RLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKV-EQSAER-----CVSTLLDLIQTKVNYVVQEAIVVIRDI 417 (591)
T ss_dssp HTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC-HHHHHH-----HHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-hhHHHH-----HHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 11 24556666777778899999999999998764 332222 578888888888888888888888887
Q ss_pred HHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhh-cCCCHHHHHHHHHHHHHhcCC
Q 043676 370 LKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQ-SHDNNEIHEKSVKIFKTYWCG 427 (446)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~~~v~~~a~~~l~~~~~~ 427 (446)
+...+... ..++..|.+.. ....++++..+.|++..|-..
T Consensus 418 i~~~p~~~------------------~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~ 458 (591)
T 2vgl_B 418 FRKYPNKY------------------ESIIATLCENLDSLDEPDARAAMIWIVGEYAER 458 (591)
T ss_dssp HHHSCSSC------------------CTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTT
T ss_pred HHHCcchH------------------HHHHHHHHHHHHhccCHHHHHHHHHHHHccccc
Confidence 76544321 12233333333 345677777777888777443
No 45
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.76 E-value=1.6e-15 Score=140.46 Aligned_cols=368 Identities=15% Similarity=0.137 Sum_probs=268.8
Q ss_pred ChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC-CChHHHHHHHHHHHHHcCCChh-
Q 043676 3 SFPALVAGVWSD-DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRE-DYPQLQYEAAWVLINIASGTSE- 79 (446)
Q Consensus 3 ~i~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~~~~- 79 (446)
.|+.|...+.+. -.+-|+.|+..|..++.. .+ ..+..++++.|+..|+.+ ++.++...++.+|.++...+++
T Consensus 22 tI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~--y~---~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 22 TIQKLCDRVASSTLLDDRRNAVRALKSLSKK--YR---LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT--TT---THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHH--hH---HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 467888888754 478899999999987543 21 233346799999999775 3378888899999887763332
Q ss_pred ----------------hHHHHH-hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChH-HHHHHHHc-CChHHHHHHhc
Q 043676 80 ----------------NTNVVI-DHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR-CRDLVLSQ-GALIPLLAELN 140 (446)
Q Consensus 80 ----------------~~~~~~-~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~-~~i~~l~~~l~ 140 (446)
..+.++ +.+.++.|+.+|++.+..+|..++.+|..++...+. .++.+... ++++.|+.+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL- 175 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL- 175 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG-
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH-
Confidence 222333 557899999999999999999999999999988776 77777755 8999999999
Q ss_pred cccchhHHHHHHHHHHHhhcCCC-CCChhhhhhhHHHHHHhhcCCC----HhHHHHHHHHHHHhccCCcHHHHHHHHhCc
Q 043676 141 EHAKLSMLRNATRTLSNFCRGKP-EPPFDQVRPALPALAQLVHSND----EDVLTYACWSLSYLADGTNDKIQAVIEAGV 215 (446)
Q Consensus 141 ~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~l~~ll~~~~----~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~ 215 (446)
++..+.++..++..|.+++.+.+ ........|+++.|+.+++.+. ..+...++.++.++.+.++.+...+.+.++
T Consensus 176 ~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~ 255 (651)
T 3grl_A 176 ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSY 255 (651)
T ss_dssp GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence 67788999999999999999984 3444556799999999998654 488999999999999999888888999999
Q ss_pred HHHHHHhcCCCCcc------chhH---HHHHHHHhhcCC------chhhHHHHhcCChHHHHHHhccC-chHHHHHHHHH
Q 043676 216 CPRLVELLGHPSPS------VLTP---ALRTVGNIVTGD------DFQTQCIINHGAVPYLLDMLVHN-HEEIIKKEISW 279 (446)
Q Consensus 216 ~~~l~~ll~~~~~~------~~~~---a~~~l~~l~~~~------~~~~~~~~~~~~~~~l~~~l~~~-~~~~v~~~a~~ 279 (446)
++.|..++..++.. .... ++.++.-++... ..+...+.+.|+++.+++++..+ -...++..|+.
T Consensus 256 i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~ 335 (651)
T 3grl_A 256 IQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETIN 335 (651)
T ss_dssp GGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHH
Confidence 99999999864322 1122 566666666542 23556677999999999998754 25689999999
Q ss_pred HHHHHhcCCHHHHHHHHHcC---------ChHHHHHHHhcC-CcchHHHHHHHHHHhccCCCHHHHHHHHHc----C---
Q 043676 280 IISNITAGNREQIQAVIDAG---------LIRPIVNLLQNA-EFDTKKEAAWAISNATSGGTQEQIKHLVRE----G--- 342 (446)
Q Consensus 280 ~l~~l~~~~~~~~~~~~~~~---------~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~----~--- 342 (446)
+++.++.+++.....+.+.. ++..|+.++.+. ...+|..|+.++.....++ ++....+... .
T Consensus 336 tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N-~~~Q~~i~~~llp~~~~~ 414 (651)
T 3grl_A 336 TVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKN-QKGQGEIVSTLLPSTIDA 414 (651)
T ss_dssp HHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTSSCCCCC
T ss_pred HHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCC-HHHHHHHHHhcCCccccc
Confidence 99999999999888887643 233344445444 5688999999999998764 4333333332 0
Q ss_pred ---ChH---HHHhcccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 043676 343 ---CVK---PLCDLLLCSDPEIVTVCLIGLENILKVGEAER 377 (446)
Q Consensus 343 ---~i~---~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~ 377 (446)
.+. .+..-+-+.|+.-.--+.-++..++...+..+
T Consensus 415 ~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K 455 (651)
T 3grl_A 415 TGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQK 455 (651)
T ss_dssp TTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHH
Confidence 011 13333334555332335556666666555443
No 46
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.74 E-value=4e-16 Score=136.31 Aligned_cols=259 Identities=15% Similarity=0.119 Sum_probs=202.9
Q ss_pred HHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 043676 41 VIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120 (446)
Q Consensus 41 ~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~ 120 (446)
....+.++.|+..|.+++ +.+|..|+++|+++.. + +.++.|..++.++++.+|..++++|+.+.....
T Consensus 19 ~~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~ 86 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK 86 (280)
T ss_dssp HHHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred HHHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence 345678999999999988 8999999999999974 2 357889999999999999999999999874332
Q ss_pred HHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhc
Q 043676 121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLA 200 (446)
Q Consensus 121 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~ 200 (446)
... . .++.+...+..++++.++..++++|..+....+ ......++.+...+.++++.++..++.+++.+.
T Consensus 87 ~~~-~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 87 CED-N-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN 156 (280)
T ss_dssp THH-H-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred cch-H-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence 211 1 223343333367889999999999999975431 123567899999999999999999999999875
Q ss_pred cCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHH
Q 043676 201 DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWI 280 (446)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~ 280 (446)
. .+.++.|+.++.++++.+|..|+++|+.+....+ ..++.+...+.++ ++.+|..|+++
T Consensus 157 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~a 215 (280)
T 1oyz_A 157 D-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIG 215 (280)
T ss_dssp -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 3 2578999999999999999999999999864332 2467888999888 89999999999
Q ss_pred HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC-CCHHHH
Q 043676 281 ISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC-SDPEIV 359 (446)
Q Consensus 281 l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~ 359 (446)
|+++. + ...++.|+..+.+. +++..|+.+|+.+.. + ..++.|.+++.+ ++++++
T Consensus 216 L~~~~--~---------~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~---~---------~~~~~L~~~l~~~~~~~~~ 270 (280)
T 1oyz_A 216 LSYRK--D---------KRVLSVLCDELKKN--TVYDDIIEAAGELGD---K---------TLLPVLDTMLYKFDDNEII 270 (280)
T ss_dssp HHHTT--C---------GGGHHHHHHHHTSS--SCCHHHHHHHHHHCC---G---------GGHHHHHHHHTTSSCCHHH
T ss_pred HHHhC--C---------HhhHHHHHHHhcCc--cHHHHHHHHHHhcCc---h---------hhhHHHHHHHhcCCCcHHH
Confidence 99984 2 24788899999764 489999999999854 1 367888888854 567777
Q ss_pred HHHHHHHH
Q 043676 360 TVCLIGLE 367 (446)
Q Consensus 360 ~~~~~~l~ 367 (446)
..++..+.
T Consensus 271 ~~~~~~l~ 278 (280)
T 1oyz_A 271 TSAIDKLK 278 (280)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 77777664
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.74 E-value=1.1e-16 Score=154.41 Aligned_cols=330 Identities=12% Similarity=0.110 Sum_probs=221.0
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV 83 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 83 (446)
+|.+.+.+.+.++.+|..|+.++.++.... .+.. .+.++++.+.++|.+++ +.++..|+.+|+.++..+++....
T Consensus 123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~---~~~~~~~~l~~lL~d~d-~~V~~~A~~aL~~i~~~~~~~~~~ 197 (591)
T 2vgl_B 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMV---EDQGFLDSLRDLIADSN-PMVVANAVAALSEISESHPNSNLL 197 (591)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCH---HHHHHHHHHHHTTSCSC-HHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhc---ccccHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhhCCCccch
Confidence 456888899999999999999999998864 3322 23467899999999888 999999999999999865533100
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-
Q 043676 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK- 162 (446)
Q Consensus 84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~- 162 (446)
-...+.+..|+..+.+.++-.+...+.++..++...+.... ..++.+...+ ++.++.++..+++++..+....
T Consensus 198 ~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l-~~~~~~V~~ea~~~i~~l~~~~~ 271 (591)
T 2vgl_B 198 DLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRL-SHANSAVVLSAVKVLMKFLELLP 271 (591)
T ss_dssp CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCS-CSSTTHHHHHHHHHHHHSCCSCC
T ss_pred hccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHH-cCCChHHHHHHHHHHHHHhhccC
Confidence 00112356677777778888888999999888855443322 2355666666 6788999999999999997532
Q ss_pred --CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHH
Q 043676 163 --PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240 (446)
Q Consensus 163 --~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~ 240 (446)
+.........+.+.++.++. +++.++..++.++..+....++... ..+..+. .+.+.+..++..++.++..
T Consensus 272 ~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~-----~~~~~~~-~~~~d~~~Ir~~al~~L~~ 344 (591)
T 2vgl_B 272 KDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILK-----QEIKVFF-VKYNDPIYVKLEKLDIMIR 344 (591)
T ss_dssp BTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTT-----TCTTTTS-CCTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHH-----HHHHhhe-eccCChHHHHHHHHHHHHH
Confidence 11111123456677776654 7899999999999998865443221 1112121 2223346788888888888
Q ss_pred hhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHH
Q 043676 241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAA 320 (446)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~ 320 (446)
++... .... +++.+...+.+. +.++|..+++++++++...+.... .+++.|++++.+....++..+.
T Consensus 345 l~~~~--nv~~-----iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i 411 (591)
T 2vgl_B 345 LASQA--NIAQ-----VLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAI 411 (591)
T ss_dssp TCCSS--THHH-----HHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHH
T ss_pred HCChh--hHHH-----HHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHH
Confidence 87533 2222 456677777777 788888888888888775543322 3567777777777777777777
Q ss_pred HHHHHhccCCCHHHHHHHHHcCChHHHHhccc-CCCHHHHHHHHHHHHHHH
Q 043676 321 WAISNATSGGTQEQIKHLVREGCVKPLCDLLL-CSDPEIVTVCLIGLENIL 370 (446)
Q Consensus 321 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~~~~~l~~l~ 370 (446)
.++.++..... +. ...+++.|.+.++ ..++.++..++|+|+.+.
T Consensus 412 ~~l~~ii~~~p-~~-----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~ 456 (591)
T 2vgl_B 412 VVIRDIFRKYP-NK-----YESIIATLCENLDSLDEPDARAAMIWIVGEYA 456 (591)
T ss_dssp HHHHHHHHHSC-SS-----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCc-ch-----HHHHHHHHHHHHHhccCHHHHHHHHHHHHccc
Confidence 77777654311 11 1234566666664 345666666666666643
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.71 E-value=9.7e-16 Score=133.88 Aligned_cols=254 Identities=14% Similarity=0.105 Sum_probs=198.9
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676 2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT 81 (446)
Q Consensus 2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 81 (446)
+.++.|++.|.++++.++..|++.|.++.. .+.++.|+.++.+++ +.+|..|+++|+.+... +...
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~-~~~~ 88 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKIC-KKCE 88 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCC-TTTH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccc-cccc
Confidence 468899999999999999999999998642 146889999999998 89999999999999752 2211
Q ss_pred HHHHhcCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676 82 NVVIDHGAVPIFV-KLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR 160 (446)
Q Consensus 82 ~~~~~~~~i~~L~-~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 160 (446)
.. .++.|. .+++++++.+|..++++|+++....+.... ..++.++..+ .++++.++..++++|.++..
T Consensus 89 ~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 89 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred hH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence 11 234444 346788999999999999999844332222 2467888888 78899999999999998754
Q ss_pred CCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHH
Q 043676 161 GKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240 (446)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~ 240 (446)
. ..++.|..++.++++.++..++++|+.+....+ ..++.+..++.++++.+|..|+++|+.
T Consensus 158 ~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 158 K----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred H----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2 368999999999999999999999999854332 346788899999999999999999998
Q ss_pred hhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CCcchHHHH
Q 043676 241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN-AEFDTKKEA 319 (446)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a 319 (446)
+.. ...++.+...+.++ + ++..++++|+.+.. + ..++.|..++.+ .++++...+
T Consensus 219 ~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~--~---------~~~~~L~~~l~~~~~~~~~~~~ 273 (280)
T 1oyz_A 219 RKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD--K---------TLLPVLDTMLYKFDDNEIITSA 273 (280)
T ss_dssp TTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC--G---------GGHHHHHHHHTTSSCCHHHHHH
T ss_pred hCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc--h---------hhhHHHHHHHhcCCCcHHHHHH
Confidence 862 24678889999876 3 88999999999832 2 478889999875 467788887
Q ss_pred HHHHH
Q 043676 320 AWAIS 324 (446)
Q Consensus 320 ~~aL~ 324 (446)
..++.
T Consensus 274 ~~~l~ 278 (280)
T 1oyz_A 274 IDKLK 278 (280)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 77764
No 49
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.71 E-value=7.7e-16 Score=148.99 Aligned_cols=359 Identities=13% Similarity=0.111 Sum_probs=258.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV 83 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 83 (446)
+..|.+.|+++|+.++..|+++|.++... .+. ..+++.+.+++.+++ +.+|..|+.++.++...+++...
T Consensus 109 in~l~kDL~~~n~~vr~lAL~~L~~i~~~-------~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~- 178 (618)
T 1w63_A 109 TNCIKNDLNHSTQFVQGLALCTLGCMGSS-------EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME- 178 (618)
T ss_dssp HHHHHHHHSCSSSHHHHHHHHHHHHHCCH-------HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG-
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcCCH-------HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH-
Confidence 46778889999999999999999987531 222 256888999999999 99999999999999986665432
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc--------------ccchhHHH
Q 043676 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE--------------HAKLSMLR 149 (446)
Q Consensus 84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--------------~~~~~~~~ 149 (446)
+.++.+..++.+.++.++..|+.++..++..++.....+ ...++.++..|.+ ..++-.+.
T Consensus 179 ----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~ 252 (618)
T 1w63_A 179 ----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQV 252 (618)
T ss_dssp ----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHH
T ss_pred ----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHH
Confidence 578888899999999999999999999997765532222 2568888887743 24778888
Q ss_pred HHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc------CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc
Q 043676 150 NATRTLSNFCRGKPEPPFDQVRPALPALAQLVH------SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELL 223 (446)
Q Consensus 150 ~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~------~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll 223 (446)
.++.+|..++...+. ....+.+.|..++. +.+..+...+++++..+... +. +.. .+++.|..++
T Consensus 253 ~il~~L~~l~~~~~~----~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~----l~~-~a~~~L~~~L 322 (618)
T 1w63_A 253 RILRLLRILGRNDDD----SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SG----LRV-LAINILGRFL 322 (618)
T ss_dssp HHHHHHHHHTTTCHH----HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HH----HHH-HHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHH----HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HH----HHH-HHHHHHHHHH
Confidence 899999999876421 12334455555543 23568899999999887542 21 111 4567888889
Q ss_pred CCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 043676 224 GHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRP 303 (446)
Q Consensus 224 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~ 303 (446)
.+.++.++..|+.+|..++...+.. + ......++..+.++ +..+|..|+.++..++.... .. .+++.
T Consensus 323 ~~~d~~vr~~aL~~L~~i~~~~p~~----~-~~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~-----~iv~e 389 (618)
T 1w63_A 323 LNNDKNIRYVALTSLLKTVQTDHNA----V-QRHRSTIVDCLKDL-DVSIKRRAMELSFALVNGNN--IR-----GMMKE 389 (618)
T ss_dssp TCSSTTTHHHHHHHHHHHHHHHHHH----H-GGGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSSS--TH-----HHHHH
T ss_pred hCCCCchHHHHHHHHHHHHhhCHHH----H-HHHHHHHHHHccCC-ChhHHHHHHHHHHHHccccc--HH-----HHHHH
Confidence 9999999999999999999754432 2 23567888999988 99999999999999976421 12 24677
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCC
Q 043676 304 IVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTI 383 (446)
Q Consensus 304 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 383 (446)
|...+.+.+.+++..++.+++.++....+.. .. +++.|++++......+...++..+..++...+..+
T Consensus 390 L~~~l~~~d~e~r~~~v~~I~~la~k~~~~~-~~-----~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~------ 457 (618)
T 1w63_A 390 LLYFLDSCEPEFKADCASGIFLAAEKYAPSK-RW-----HIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMH------ 457 (618)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHSSCCCH-HH-----HHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTH------
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhCccH-HH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHH------
Confidence 8888888899999999999999988532222 22 36778888877666666666677777776544321
Q ss_pred CccchHHHHHHHhChHHHHHHhhc--CCCHHHHHHHHHHHHHhc
Q 043676 384 GDVNQYAQFVEEAGGLEKIENLQS--HDNNEIHEKSVKIFKTYW 425 (446)
Q Consensus 384 ~~~~~~~~~l~~~~~~~~l~~l~~--~~~~~v~~~a~~~l~~~~ 425 (446)
.. ++..+..+.. ...+.+...+.|++..|-
T Consensus 458 -------~~-----~v~~L~~~l~~~~~~~~~~~~~~wilGEy~ 489 (618)
T 1w63_A 458 -------AY-----TVQRLYKAILGDYSQQPLVQVAAWCIGEYG 489 (618)
T ss_dssp -------HH-----HHHHHHHHHHHCCSCSHHHHHHHHHHHHHH
T ss_pred -------HH-----HHHHHHHHHhcccccHHHHHHHHHHHhhhH
Confidence 11 1223333322 234455667899999885
No 50
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.68 E-value=6.3e-15 Score=149.71 Aligned_cols=359 Identities=14% Similarity=0.149 Sum_probs=246.2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCC----------------CCcHHHHHhcCCHHHHHHhhcCCC------ChH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDR----------------NPPIEKVIQSGVVPRFVEFLMRED------YPQ 61 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~----------------~~~~~~~~~~~~~~~L~~ll~~~~------~~~ 61 (446)
++.+...+.+.++.++..++..+..++.... ........ ..++|.++..+...+ ...
T Consensus 268 ~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~ 346 (861)
T 2bpt_A 268 YALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWN 346 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCc
Confidence 4555667778889999999999988765310 01111222 357888888887521 247
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-HHHHHHHHcCChHHHHHHhc
Q 043676 62 LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP-RCRDLVLSQGALIPLLAELN 140 (446)
Q Consensus 62 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~l~~~l~ 140 (446)
++..+..+|..++...++. ++ ..+++.+...+.++++.+|+.++++++.++.... ..-..... .+++.++..+
T Consensus 347 ~r~~a~~~L~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l- 420 (861)
T 2bpt_A 347 VSMSAGACLQLFAQNCGNH---IL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLM- 420 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGG-
T ss_pred HHHHHHHHHHHHHHHccHh---HH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHc-
Confidence 8999999999988622211 11 1346777778888899999999999999996642 21111111 2567777777
Q ss_pred cccchhHHHHHHHHHHHhhcCCCC--CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCc----HHHHHHHHhC
Q 043676 141 EHAKLSMLRNATRTLSNFCRGKPE--PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTN----DKIQAVIEAG 214 (446)
Q Consensus 141 ~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~----~~~~~~~~~~ 214 (446)
.++++.++..++|+++.++..... ........++|.++..+.++ +.++..+++++.+++.... ......+ ..
T Consensus 421 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~ 498 (861)
T 2bpt_A 421 NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-PA 498 (861)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-HH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-HH
Confidence 677899999999999999875321 12334678889999999775 9999999999999875421 1111122 25
Q ss_pred cHHHHHHhcCCCC--ccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhcc--------------CchHHHHHHHH
Q 043676 215 VCPRLVELLGHPS--PSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVH--------------NHEEIIKKEIS 278 (446)
Q Consensus 215 ~~~~l~~ll~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~--------------~~~~~v~~~a~ 278 (446)
+++.+...+.+.+ +.++..++.+++.++...+......+. .+++.++..+.. .....++..++
T Consensus 499 il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 577 (861)
T 2bpt_A 499 LVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNIL 577 (861)
T ss_dssp HHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHH
Confidence 6788888888544 688999999999998766544433332 255666666542 11446788899
Q ss_pred HHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCc-chHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHH
Q 043676 279 WIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEF-DTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPE 357 (446)
Q Consensus 279 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 357 (446)
.++.+++............ .+++.+...+++.+. .++..++.++..++.....+...++-. +++.+...+++++++
T Consensus 578 ~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~~~~~~ 654 (861)
T 2bpt_A 578 TVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET--FSPYLLKALNQVDSP 654 (861)
T ss_dssp HHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHHCTTSH
T ss_pred HHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHhccccHH
Confidence 9999998643322222222 477788888888777 899999999999876433333334333 788888888888899
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 043676 358 IVTVCLIGLENILKVGEA 375 (446)
Q Consensus 358 ~~~~~~~~l~~l~~~~~~ 375 (446)
++..+++++..++...+.
T Consensus 655 vr~~a~~~l~~l~~~~~~ 672 (861)
T 2bpt_A 655 VSITAVGFIADISNSLEE 672 (861)
T ss_dssp HHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHhch
Confidence 999999999998876543
No 51
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.68 E-value=3.8e-15 Score=151.31 Aligned_cols=400 Identities=10% Similarity=0.104 Sum_probs=263.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh--H
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN--T 81 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~--~ 81 (446)
+|.+.+.+.+.++..+..|++++..++.+........... .+++.++..+.+++ +.+|..++++++.++...... .
T Consensus 371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~ 448 (861)
T 2bpt_A 371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDP 448 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCC
Confidence 3555667778899999999999999886531122222222 47888999999888 899999999999998621110 0
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-----hHHHHHHHHcCChHHHHHHhcc-ccchhHHHHHHHHH
Q 043676 82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS-----PRCRDLVLSQGALIPLLAELNE-HAKLSMLRNATRTL 155 (446)
Q Consensus 82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~-----~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a~~~L 155 (446)
... -..+++.++..+.++ +.++..+++++.+++... ......+ ..+++.++..+.. +.++.++..++.++
T Consensus 449 ~~~-~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al 524 (861)
T 2bpt_A 449 QQH-LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSAL 524 (861)
T ss_dssp TTT-HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence 000 123467888888776 999999999999988421 1111111 1235677777742 23478999999999
Q ss_pred HHhhcCCCCCChhhhhhhHHHHHHhhcCC---------------CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHH
Q 043676 156 SNFCRGKPEPPFDQVRPALPALAQLVHSN---------------DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLV 220 (446)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~l~~ll~~~---------------~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~ 220 (446)
..++...+.........++|.++..+... ...++..++.++..++...+........ .+++.+.
T Consensus 525 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~ 603 (861)
T 2bpt_A 525 TTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFF 603 (861)
T ss_dssp HHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHH
T ss_pred HHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHH
Confidence 99988765433334456677777666521 3567888999999888654432222222 5677788
Q ss_pred HhcCCCCc-cchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 043676 221 ELLGHPSP-SVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAG 299 (446)
Q Consensus 221 ~ll~~~~~-~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 299 (446)
..+.+.+. .++..++.+++.++..........+. .+++.+...+.++ ++.++..++.+++.++........... ..
T Consensus 604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ 680 (861)
T 2bpt_A 604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-DA 680 (861)
T ss_dssp HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HH
T ss_pred HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-HH
Confidence 88887766 89999999999998654443333332 3788888888776 788999999999998763222222222 25
Q ss_pred ChHHHHHHHhcCC--cchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCC-----------HHHHHHHHHHH
Q 043676 300 LIRPIVNLLQNAE--FDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSD-----------PEIVTVCLIGL 366 (446)
Q Consensus 300 ~i~~L~~ll~~~~--~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~-----------~~~~~~~~~~l 366 (446)
+++.+++.+.+.+ +.++..++.+++.++.........++- .+++.+...++... ..++..+++++
T Consensus 681 l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~ 758 (861)
T 2bpt_A 681 MMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAY 758 (861)
T ss_dssp HHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 7888888888764 889999999999998754333333332 25777777776421 35788888888
Q ss_pred HHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCC----CHHHHHHHHHHHHHhcC
Q 043676 367 ENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHD----NNEIHEKSVKIFKTYWC 426 (446)
Q Consensus 367 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~----~~~v~~~a~~~l~~~~~ 426 (446)
..++........ ...++... .++.+.....+. +..++..|..++..+..
T Consensus 759 ~~i~~~l~~~~~------~~~~~~~~-----i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~ 811 (861)
T 2bpt_A 759 VGIVAGLHDKPE------ALFPYVGT-----IFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA 811 (861)
T ss_dssp HHHHHHTTTCHH------HHGGGHHH-----HHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHH------HHHHHHHH-----HHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence 888754331000 01111111 234444444442 78899999999888754
No 52
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.68 E-value=3.5e-15 Score=151.92 Aligned_cols=393 Identities=15% Similarity=0.166 Sum_probs=251.5
Q ss_pred hHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCCCCcH-HHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676 4 FPALVAGVWSD--DNSLQLEATTLSRKLLSFDRNPPI-EKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN 80 (446)
Q Consensus 4 i~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 80 (446)
++.+.+.+.++ ++.+|..|++++..++..- .... .......+++.+.+.+.+++ ++++..++.+|..++...++.
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHH
Confidence 45677778776 6899999999999877542 1110 01111236777778887777 899999999999999755554
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChH----------------------HHHHHHHcCChHHHHHH
Q 043676 81 TNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR----------------------CRDLVLSQGALIPLLAE 138 (446)
Q Consensus 81 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~----------------------~~~~~~~~~~i~~l~~~ 138 (446)
....+...+++.++..+.+.++.++..++.++..++..... .+..+ ...++.++..
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ll~~ll~~ 329 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL--QYLVPILTQT 329 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH--HHHhHHHHHH
Confidence 44444446788888888888999999999999988743110 00011 1235566666
Q ss_pred hcc------ccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCc-HHHHHHH
Q 043676 139 LNE------HAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTN-DKIQAVI 211 (446)
Q Consensus 139 l~~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~-~~~~~~~ 211 (446)
+.. +.+..++..+..++..++...+. .....+++.+...+.+.++.+|..++++++.++.... +......
T Consensus 330 l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~ 406 (876)
T 1qgr_A 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (876)
T ss_dssp TTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred hhcccccccccccHHHHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 632 23467888999999988876431 2356778888888888999999999999999998755 3333333
Q ss_pred HhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhh--HHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCH
Q 043676 212 EAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQT--QCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNR 289 (446)
Q Consensus 212 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 289 (446)
..+++.++..+.++++.+|..|++++++++...+... ... -..+++.++..+.+. +.++..+++++++++....
T Consensus 407 -~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~ 482 (876)
T 1qgr_A 407 -IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSAE--PRVASNVCWAFSSLAEAAY 482 (876)
T ss_dssp -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhh
Confidence 3688999999999999999999999999987543311 011 123567777888654 7789999999999975311
Q ss_pred --------------HHHHHHHHcCChHHHHHHHhcC---CcchHHHHHHHHHHhcc------------------------
Q 043676 290 --------------EQIQAVIDAGLIRPIVNLLQNA---EFDTKKEAAWAISNATS------------------------ 328 (446)
Q Consensus 290 --------------~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~l~~------------------------ 328 (446)
....... ..+++.|...+... +..++..+..++..++.
T Consensus 483 ~~~~~~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 561 (876)
T 1qgr_A 483 EAADVADDQEEPATYCLSSSF-ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQV 561 (876)
T ss_dssp HTTSCTTSCCCCCCCSSTTTH-HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccccchhhhHhH-HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHH
Confidence 0011111 13556666666543 23555555555555433
Q ss_pred --------------------------------CCC-HHHHHHHHHcCChHHHHhcccCCC--HHHHHHHHHHHHHHHHhh
Q 043676 329 --------------------------------GGT-QEQIKHLVREGCVKPLCDLLLCSD--PEIVTVCLIGLENILKVG 373 (446)
Q Consensus 329 --------------------------------~~~-~~~~~~l~~~~~i~~L~~ll~~~~--~~~~~~~~~~l~~l~~~~ 373 (446)
... .....++ ..+++.+..++++.+ +.++..++.++..++...
T Consensus 562 ~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~ 639 (876)
T 1qgr_A 562 LQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS--DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL 639 (876)
T ss_dssp HTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH--HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH--HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHH
Confidence 211 1111111 124566667776654 478889999999988754
Q ss_pred hhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCC-CHHHHHHHHHHHHHh
Q 043676 374 EAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHD-NNEIHEKSVKIFKTY 424 (446)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~ 424 (446)
+..- .++... .++.+.....+. +++++..|.+.+..+
T Consensus 640 ~~~~---------~~~~~~-----~~~~l~~~l~~~~~~~vr~~a~~~l~~l 677 (876)
T 1qgr_A 640 GGEF---------LKYMEA-----FKPFLGIGLKNYAEYQVCLAAVGLVGDL 677 (876)
T ss_dssp GGGG---------GGGHHH-----HHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HhhH---------HHHHHH-----HHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 3321 112222 244444444443 677777776665544
No 53
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.66 E-value=1.7e-15 Score=142.55 Aligned_cols=389 Identities=11% Similarity=0.073 Sum_probs=265.6
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHcCCChhhHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRED-YPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
+..+++.+.++|..+|..|-..|.++...+ ..++...|..++.+++ ++.+|..|+..|.++.........
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence 456677778899999999999998754310 1245677778777652 479999999999999763311110
Q ss_pred H-----------HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hHHHHHHHHcCChHHHHHHhcccc--chhHH
Q 043676 83 V-----------VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAELNEHA--KLSML 148 (446)
Q Consensus 83 ~-----------~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~--~~~~~ 148 (446)
. -....+-..++..+.++++.+ ..++.+++.++... +.. .-.+.++.++..+ .+. ++.++
T Consensus 74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~----~w~~ll~~L~~~l-~~~~~~~~~r 147 (462)
T 1ibr_B 74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN----QWPELIPQLVANV-TNPNSTEHMK 147 (462)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT----CCTTHHHHHHHHH-HCTTCCHHHH
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc----ccHHHHHHHHHHh-ccCCCCHHHH
Confidence 0 011123355777788877778 88888998888331 110 0124577888888 455 88999
Q ss_pred HHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCC--CHhHHHHHHHHHHHhccCCcHHHH-HHHHhCcHHHHHHhcC
Q 043676 149 RNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHSN--DEDVLTYACWSLSYLADGTNDKIQ-AVIEAGVCPRLVELLG 224 (446)
Q Consensus 149 ~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~l~~ll~ 224 (446)
..++.+|..++... +.........+++.+...+.+. ++.+|..++.+++++...-.+... .....-+++.+...+.
T Consensus 148 ~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 227 (462)
T 1ibr_B 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ 227 (462)
T ss_dssp HHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence 99999999999754 2222333467888899999887 799999999999987643221110 0111124667777788
Q ss_pred CCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHH----------
Q 043676 225 HPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQA---------- 294 (446)
Q Consensus 225 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~---------- 294 (446)
++++.++..++.++..++...+......+...+++.++..+++. ++.++..++..+..++..... ...
T Consensus 228 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~ 305 (462)
T 1ibr_B 228 CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMD-LAIEASEAAEQGR 305 (462)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHH-HHHHHCCTTCSSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHH-HHHhcccccccCC
Confidence 88899999999999999876554332222225677778888887 889999999999888653110 000
Q ss_pred --------HHH---cCChHHHHHHHhc-------CCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCH
Q 043676 295 --------VID---AGLIRPIVNLLQN-------AEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDP 356 (446)
Q Consensus 295 --------~~~---~~~i~~L~~ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 356 (446)
+.+ ..++|.+++.+.. .++.++..|..+|..++......... .+++.+...+.++++
T Consensus 306 ~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~ 380 (462)
T 1ibr_B 306 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDW 380 (462)
T ss_dssp CSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSH
T ss_pred CccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhcCCCh
Confidence 111 2356667777743 24578999999999987754322222 257778888899999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043676 357 EIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCG 427 (446)
Q Consensus 357 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 427 (446)
.++..++.++..+........ +...+ ...++.+..++.++++.++..|.+.+.++...
T Consensus 381 ~~r~aal~~l~~l~~~~~~~~-----------~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 381 RYRDAAVMAFGCILEGPEPSQ-----------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHHHHHHHTSSSSCTTT-----------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHH-----------HHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999876322110 01111 45677788888999999999999999998653
No 54
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.65 E-value=9.1e-15 Score=141.51 Aligned_cols=326 Identities=14% Similarity=0.090 Sum_probs=236.9
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV 83 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 83 (446)
++.+.+.+.+.++.+|..|+.++.++.... ++.. .++++.+.+++.+++ +.++..|+.+|..++..+++....
T Consensus 144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v-----~~~~~~l~~lL~D~d-~~V~~~Al~~L~~i~~~~~~~~~~ 216 (618)
T 1w63_A 144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELM-----EMFLPATKNLLNEKN-HGVLHTSVVLLTEMCERSPDMLAH 216 (618)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGG-----GGGGGGTTTSTTCCC-HHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHH-----HHHHHHHHHHhCCCC-HhHHHHHHHHHHHHHHhChHHHHH
Confidence 577888999999999999999999998763 2221 267888889999888 999999999999999855553333
Q ss_pred HHhcCChHHHHHhhCC---------------CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc-----ccc
Q 043676 84 VIDHGAVPIFVKLLSS---------------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN-----EHA 143 (446)
Q Consensus 84 ~~~~~~i~~L~~~L~~---------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-----~~~ 143 (446)
+. ..++.++..|.+ +++-.+..++.+++.++...+.... ...+.+..++. ++.
T Consensus 217 ~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~ 289 (618)
T 1w63_A 217 FR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNV 289 (618)
T ss_dssp HH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTH
T ss_pred HH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccch
Confidence 32 567777776652 4788889999999999977665332 23445555542 223
Q ss_pred chhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc
Q 043676 144 KLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELL 223 (446)
Q Consensus 144 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll 223 (446)
+..+...+++++..+... ......+++.+..++.+.++.++..++.+|..++...+.... .....++.++
T Consensus 290 ~~aV~~ea~~~i~~l~~~-----~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~-----~~~~~i~~~l 359 (618)
T 1w63_A 290 GNAILYETVLTIMDIKSE-----SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQ-----RHRSTIVDCL 359 (618)
T ss_dssp HHHHHHHHHHHHHHSCCC-----HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHG-----GGHHHHHHGG
T ss_pred HHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHH-----HHHHHHHHHc
Confidence 567888899998887432 122235778889999999999999999999999876443222 5667889999
Q ss_pred CCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 043676 224 GHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRP 303 (446)
Q Consensus 224 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~ 303 (446)
.+++..+|..|+.++..++.... ... +++.+...+.+. +.++|..++.+++.++...+.... ..++.
T Consensus 360 ~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~-d~e~r~~~v~~I~~la~k~~~~~~-----~~v~~ 426 (618)
T 1w63_A 360 KDLDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSC-EPEFKADCASGIFLAAEKYAPSKR-----WHIDT 426 (618)
T ss_dssp GSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSSCCCHH-----HHHHH
T ss_pred cCCChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhCccHH-----HHHHH
Confidence 99999999999999999987432 222 357788888877 899999999999999874221111 24678
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC--CCHHHHHHHHHHHHHHHHh
Q 043676 304 IVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC--SDPEIVTVCLIGLENILKV 372 (446)
Q Consensus 304 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~~~~~~~~~l~~l~~~ 372 (446)
+++++......++..+...+..+.... ++.... ++..|++.+.+ ....+...++|+|+.+...
T Consensus 427 ll~lL~~~~~~v~~~~~~~l~~ii~~~-p~l~~~-----~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~ 491 (618)
T 1w63_A 427 IMRVLTTAGSYVRDDAVPNLIQLITNS-VEMHAY-----TVQRLYKAILGDYSQQPLVQVAAWCIGEYGDL 491 (618)
T ss_dssp HHHHHHHTGGGSCSSHHHHHHHHHHHS-CSTHHH-----HHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHhcC-hhHHHH-----HHHHHHHHHhcccccHHHHHHHHHHHhhhHHH
Confidence 888888777677777777787776542 222222 35566666653 3345556789999988653
No 55
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.64 E-value=1.5e-14 Score=147.28 Aligned_cols=406 Identities=14% Similarity=0.160 Sum_probs=259.0
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh---
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN--- 80 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~--- 80 (446)
+|.+.+.+.+.++.+|..+++++..++.+...+...... ..++|.++..+.+++ +.+|..|++++++++...+..
T Consensus 368 l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~ 445 (876)
T 1qgr_A 368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAIN 445 (876)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTSS
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhccc
Confidence 456667788899999999999999987753111222222 357899999999888 899999999999999743321
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh---------------HHHHHHHHcCChHHHHHHhcccc--
Q 043676 81 TNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP---------------RCRDLVLSQGALIPLLAELNEHA-- 143 (446)
Q Consensus 81 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~---------------~~~~~~~~~~~i~~l~~~l~~~~-- 143 (446)
...+ ..+++.++..+.++ +.++..+++++.+++.... .....+ ..+++.++..+....
T Consensus 446 ~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~ 520 (876)
T 1qgr_A 446 DVYL--APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGH 520 (876)
T ss_dssp TTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSC
T ss_pred HHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcc
Confidence 1111 24567888888775 8999999999999984211 000111 124566666664322
Q ss_pred chhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcC-----------CC----HhHHHHHHHHHHHhccCCc-HHH
Q 043676 144 KLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHS-----------ND----EDVLTYACWSLSYLADGTN-DKI 207 (446)
Q Consensus 144 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~-----------~~----~~v~~~~~~~l~~l~~~~~-~~~ 207 (446)
+..++..+..++..++...+..........++.++..+.. .+ ++++..++.++..++.... ...
T Consensus 521 ~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~ 600 (876)
T 1qgr_A 521 QNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA 600 (876)
T ss_dssp STTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred hhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhh
Confidence 3578888999999998876544444456677777666542 22 4567888999999987665 443
Q ss_pred HHHHHhCcHHHHHHhcCCCC--ccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHh
Q 043676 208 QAVIEAGVCPRLVELLGHPS--PSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNIT 285 (446)
Q Consensus 208 ~~~~~~~~~~~l~~ll~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~ 285 (446)
.... ..+++.++.++++.+ +.++..++.+++.++..........+. .+++.+...+.+..++.+|..++++++.++
T Consensus 601 ~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 678 (876)
T 1qgr_A 601 LQIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLC 678 (876)
T ss_dssp HTTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 3222 367788888888764 468899999999998643322222222 266778888876536789999999999997
Q ss_pred cCCHHHHHHHHHcCChHHHHHHHhc--CCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCC----C----
Q 043676 286 AGNREQIQAVIDAGLIRPIVNLLQN--AEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCS----D---- 355 (446)
Q Consensus 286 ~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~----~---- 355 (446)
............ .+++.+++.+.+ .+.+++..+++++++++....++...++ ..+++.+.+.++.+ +
T Consensus 679 ~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~~ 755 (876)
T 1qgr_A 679 RALQSNIIPFCD-EVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKSDYDMV 755 (876)
T ss_dssp HHHGGGGHHHHH-HHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTTCHHHH
T ss_pred HHHHHhhhhhHH-HHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCCChHHH
Confidence 632222222222 578888888887 3578999999999999763322322222 12456666666543 1
Q ss_pred ---HHHHHHHHHHHHHHHHhhhhhhcc-cCCCCccchHHHHHHHhChHHHHHHhhcCC--CHHHHHHHHHHHHHhcC
Q 043676 356 ---PEIVTVCLIGLENILKVGEAERNM-GTTIGDVNQYAQFVEEAGGLEKIENLQSHD--NNEIHEKSVKIFKTYWC 426 (446)
Q Consensus 356 ---~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~ 426 (446)
..++..++.++..++......... ........+|...+ ++.+..+..++ +..++..|..++..+..
T Consensus 756 ~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~ 827 (876)
T 1qgr_A 756 DYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLCT 827 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 268888888888887654321000 00000112232222 23444454555 67899888888887654
No 56
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.63 E-value=3.4e-14 Score=149.44 Aligned_cols=406 Identities=12% Similarity=0.109 Sum_probs=265.8
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV 83 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 83 (446)
++.+++.+.+.|+++|..|...|.+..... ......-....+++.+++.+.+++ +.+|..|+.+|++++...++. .
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~--~ 83 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY--Q 83 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--H
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH--H
Confidence 678899999999999999999998876543 111111112246788889998887 899999999999998744331 1
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHH------HHHHHHcCChHHHHHHhccccchhHHHHHHHHHHH
Q 043676 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC------RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSN 157 (446)
Q Consensus 84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~------~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 157 (446)
+ ..+++.++..+.++++.+|..++.+++.++...+.. ... .-...++.++..+.++.+..++..++.++..
T Consensus 84 ~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 84 V--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp H--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 1 235788888888988999999999999988433211 011 1123578888888435778999999999999
Q ss_pred hhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC-CccchhHHHH
Q 043676 158 FCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLTPALR 236 (446)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~~~~a~~ 236 (446)
++...+..-......+++.+...+.++++.+|..++.+++.++...++. ++ ..+++.++..+.+. ++.++..++.
T Consensus 161 ~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~~ 236 (1230)
T 1u6g_C 161 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYIQ 236 (1230)
T ss_dssp HHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHHH
Confidence 9865432222345778888999999999999999999999999765432 12 24577777777654 3578888999
Q ss_pred HHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-------
Q 043676 237 TVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQ------- 309 (446)
Q Consensus 237 ~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~------- 309 (446)
+++.++...+...... -..+++.++..+.+. ++.+|..++.++..++...++....... .+++.+++.+.
T Consensus 237 ~l~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~ 313 (1230)
T 1u6g_C 237 CIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNY 313 (1230)
T ss_dssp HHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC-----
T ss_pred HHHHHHHHhHHHHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCC
Confidence 9999987544322211 235788899999887 8889999999999987632221111111 23333333221
Q ss_pred ------------------------------cCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHH
Q 043676 310 ------------------------------NAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIV 359 (446)
Q Consensus 310 ------------------------------~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~ 359 (446)
+..+.+|..|+.++..++.... +....+. ..+++.+...+.+.++.++
T Consensus 314 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~-~~~~~~~-~~l~~~l~~~l~d~~~~Vr 391 (1230)
T 1u6g_C 314 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEFY-KTVSPALISRFKEREENVK 391 (1230)
T ss_dssp -------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHHH-TTTHHHHHSTTSCSSSHHH
T ss_pred cccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhch-hHHHHHH-HHHHHHHHHHcCCCchHHH
Confidence 1124578999999999887433 2222222 3478889999988999999
Q ss_pred HHHHHHHHHHHHhhhhhhccc---CCCC---ccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043676 360 TVCLIGLENILKVGEAERNMG---TTIG---DVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWC 426 (446)
Q Consensus 360 ~~~~~~l~~l~~~~~~~~~~~---~~~~---~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 426 (446)
..++.++..++.......... .... ........+. ...++.+.....++++.++..+...+..+..
T Consensus 392 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~ 463 (1230)
T 1u6g_C 392 ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVN 463 (1230)
T ss_dssp HHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 999999988876432100000 0000 0000000010 1224445555777788887777777766643
No 57
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.62 E-value=9.3e-16 Score=144.33 Aligned_cols=357 Identities=14% Similarity=0.126 Sum_probs=241.0
Q ss_pred HHHHHhhcCC--CHHHHHHHHHHHHHHhcCCCCCcH-----------HHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHH
Q 043676 5 PALVAGVWSD--DNSLQLEATTLSRKLLSFDRNPPI-----------EKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLI 71 (446)
Q Consensus 5 ~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~-----------~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~ 71 (446)
+.|++.+.++ ++.+|..|+..|.++.... .... ..-....+-..++..+.+++ +.+ ..++.+++
T Consensus 38 ~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~-~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i~ 114 (462)
T 1ibr_B 38 VELSRVLANPGNSQVARVAAGLQIKNSLTSK-DPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCVA 114 (462)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHhcccc-chHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHHH
Confidence 3456666654 6899999999999987642 1000 00112234456777888877 678 88999999
Q ss_pred HHcCCC-hhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCC-hHHHHHHHHcCChHHHHHHhcccc-chh
Q 043676 72 NIASGT-SENTNVVIDHGAVPIFVKLLSSP--SDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAELNEHA-KLS 146 (446)
Q Consensus 72 ~l~~~~-~~~~~~~~~~~~i~~L~~~L~~~--~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~-~~~ 146 (446)
.++... ++. .-.+.++.|+..+.++ ++.+++.++.++..++... +..-.... ...++.++..+.... +..
T Consensus 115 ~ia~~~~~~~----~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~ 189 (462)
T 1ibr_B 115 GIACAEIPVN----QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNN 189 (462)
T ss_dssp HHHHHHGGGT----CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHH
T ss_pred HHHHHhcccc----ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHH
Confidence 998732 210 0136788899999888 8999999999999998532 21100111 124667778884332 789
Q ss_pred HHHHHHHHHHHhhcCCC-C-CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC
Q 043676 147 MLRNATRTLSNFCRGKP-E-PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLG 224 (446)
Q Consensus 147 ~~~~a~~~L~~l~~~~~-~-~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~ 224 (446)
++..+++++.++..... . ........+++.+...+.+.++.++..++.++..++...+......+..++++.++..+.
T Consensus 190 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 269 (462)
T 1ibr_B 190 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK 269 (462)
T ss_dssp HHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999998764321 0 011111234677777788889999999999999998665533222222266777777888
Q ss_pred CCCccchhHHHHHHHHhhcCCc---------------------hhhHHHHhcCChHHHHHHhccC------chHHHHHHH
Q 043676 225 HPSPSVLTPALRTVGNIVTGDD---------------------FQTQCIINHGAVPYLLDMLVHN------HEEIIKKEI 277 (446)
Q Consensus 225 ~~~~~~~~~a~~~l~~l~~~~~---------------------~~~~~~~~~~~~~~l~~~l~~~------~~~~v~~~a 277 (446)
+.++.++..|+..+..++.... ...+..+ ..+++.++..+... .+..+|..|
T Consensus 270 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a 348 (462)
T 1ibr_B 270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAA 348 (462)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHH
Confidence 8889999999999988875320 0111011 23556666666432 145789999
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHH
Q 043676 278 SWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPE 357 (446)
Q Consensus 278 ~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 357 (446)
+.+|..++...++ .+.. .+++.+...+.+.++.+|..|+.+++.++.+..++...... ..+++.+...+.++++.
T Consensus 349 ~~~L~~l~~~~~~---~~~~-~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~ 423 (462)
T 1ibr_B 349 GVCLMLLATCCED---DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVV 423 (462)
T ss_dssp HHHHHHHHHHTTT---THHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHhccH---HHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHH
Confidence 9999999763222 1221 46777778888889999999999999999764422211111 45789999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 043676 358 IVTVCLIGLENILKVGEA 375 (446)
Q Consensus 358 ~~~~~~~~l~~l~~~~~~ 375 (446)
++..|+++|.++......
T Consensus 424 Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 424 VRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 999999999999876544
No 58
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.60 E-value=3.9e-14 Score=148.91 Aligned_cols=396 Identities=13% Similarity=0.142 Sum_probs=257.1
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCc----HHHHHhcCCHHHHHHhhc-CCCChHHHHHHHHHHHHHcCCCh
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPP----IEKVIQSGVVPRFVEFLM-REDYPQLQYEAAWVLINIASGTS 78 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~----~~~~~~~~~~~~L~~ll~-~~~~~~~~~~a~~~L~~l~~~~~ 78 (446)
++.+++.+.++++.+|..++.+|..++....... ...-.-..++|.|++.+. +++ +.++..|+.++..++...+
T Consensus 88 ~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~~ 166 (1230)
T 1u6g_C 88 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQG 166 (1230)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHhH
Confidence 4567777777778888888888887776532210 011122357899999998 466 8999999999999884211
Q ss_pred hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 043676 79 ENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF 158 (446)
Q Consensus 79 ~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 158 (446)
...... -...++.+...+.++++.+|..|+.+++.++...+. .+ -...++.++..+....+...+..++.++..+
T Consensus 167 ~~l~~~-~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l 241 (1230)
T 1u6g_C 167 GLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAI 241 (1230)
T ss_dssp SSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHH
T ss_pred hHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 111000 123567788888889999999999999999965442 11 2234778888885444456778888999888
Q ss_pred hcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-------------
Q 043676 159 CRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH------------- 225 (446)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~------------- 225 (446)
+...+..-......++|.+...+.+.++++|..++.++..++...+....... ..+++.++..+..
T Consensus 242 ~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~~ 320 (1230)
T 1u6g_C 242 SRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDEDE 320 (1230)
T ss_dssp HHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCccccccc
Confidence 87643322234478899999999988999999999999998865443222222 2445555554431
Q ss_pred ------------------------CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHH
Q 043676 226 ------------------------PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWII 281 (446)
Q Consensus 226 ------------------------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l 281 (446)
..+.+|..|+.++..++...+......+ ..+++.+...+.+. +..+|..++.++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~l 398 (1230)
T 1u6g_C 321 NAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHAY 398 (1230)
T ss_dssp ------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHHH
T ss_pred ccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHHH
Confidence 1234688899999999875554333333 45778888888777 889999999988
Q ss_pred HHHhcC--C-----------------HHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcC
Q 043676 282 SNITAG--N-----------------REQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREG 342 (446)
Q Consensus 282 ~~l~~~--~-----------------~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~ 342 (446)
..++.. . ......++ ..+++.+.+.+++.++.+|..++.+++.++.........++ ..
T Consensus 399 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--~~ 475 (1230)
T 1u6g_C 399 LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--PV 475 (1230)
T ss_dssp HHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--HH
T ss_pred HHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--HH
Confidence 887641 1 11111122 23566677778888999999999999988764321111111 12
Q ss_pred ChHHHHhcccCCCH--HHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHH
Q 043676 343 CVKPLCDLLLCSDP--EIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI 420 (446)
Q Consensus 343 ~i~~L~~ll~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~ 420 (446)
+++.+...+.+..+ .++..++..+..++....... +...+ ...++.+.....+.+..++..|..+
T Consensus 476 ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~-----------~~~~l--~~llp~L~~~l~d~~~~v~~~al~~ 542 (1230)
T 1u6g_C 476 LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQV-----------FHPHV--QALVPPVVACVGDPFYKITSEALLV 542 (1230)
T ss_dssp HHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGG-----------GHHHH--TTTHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHH-----------HHhHH--HHHHHHHHHHHcccchHHHHHHHHH
Confidence 57788888887764 888888988888876332211 12222 2345555555566666665555555
Q ss_pred HHHh
Q 043676 421 FKTY 424 (446)
Q Consensus 421 l~~~ 424 (446)
+..+
T Consensus 543 l~~l 546 (1230)
T 1u6g_C 543 TQQL 546 (1230)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 59
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.53 E-value=4.4e-13 Score=111.59 Aligned_cols=187 Identities=19% Similarity=0.156 Sum_probs=156.0
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
.++.|++.|+++++.++..+++.|..+.. .+.++.|++++.+++ +.++..|+++|+.+..
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC-------
Confidence 57899999999999999999999987532 256899999999988 8999999999999864
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK 162 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 162 (446)
.+.++.|..+|.++++.+|..++++|+.+.. ...++.++..+ .++++.++..++++|..+..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC--
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC--
Confidence 2468899999999999999999999999863 13567888888 78899999999999999843
Q ss_pred CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhh
Q 043676 163 PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV 242 (446)
Q Consensus 163 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~ 242 (446)
...++.|..++.++++.++..++.+|+.+.. ...++.|..++.++++.+|..|..+|.++.
T Consensus 142 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 142 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 3578999999999999999999999999853 145677888888899999999999999987
Q ss_pred cCCc
Q 043676 243 TGDD 246 (446)
Q Consensus 243 ~~~~ 246 (446)
....
T Consensus 203 ~~~~ 206 (211)
T 3ltm_A 203 SFNH 206 (211)
T ss_dssp ----
T ss_pred CCCC
Confidence 6543
No 60
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.51 E-value=7.3e-13 Score=109.35 Aligned_cols=184 Identities=20% Similarity=0.161 Sum_probs=155.8
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
..+.+++.|+++++.++..|++.|..+.. .+.++.|++++.+++ +.++..|+++|+.+..
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-------
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC-------
Confidence 46789999999999999999999987532 146899999999888 8999999999999864
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676 83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK 162 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 162 (446)
...++.|..+|.++++.+|..++++|+.+.. + ..++.++..+ .++++.++..++++|..+..
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD-- 136 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC--
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC--
Confidence 2468999999999999999999999999862 1 2567888888 78899999999999999853
Q ss_pred CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhh
Q 043676 163 PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV 242 (446)
Q Consensus 163 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~ 242 (446)
...++.|..++.++++.++..++.+|+.+.. + ..++.|..++.++++.++..|..+|..+.
T Consensus 137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999842 1 35677888888899999999999998775
Q ss_pred c
Q 043676 243 T 243 (446)
Q Consensus 243 ~ 243 (446)
.
T Consensus 198 ~ 198 (201)
T 3ltj_A 198 S 198 (201)
T ss_dssp -
T ss_pred h
Confidence 3
No 61
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.50 E-value=1.5e-12 Score=108.38 Aligned_cols=187 Identities=19% Similarity=0.186 Sum_probs=157.7
Q ss_pred cCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHH
Q 043676 44 SGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCR 123 (446)
Q Consensus 44 ~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~ 123 (446)
.+.++.|++.|.+++ +.+|..|++.|+.+.. ...++.|+.++.++++.+|..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 357999999999988 8999999999999865 2568999999999999999999999999862
Q ss_pred HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC
Q 043676 124 DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGT 203 (446)
Q Consensus 124 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~ 203 (446)
.+.++.++..+ .++++.++..++++|..+.. ...++.|..++.++++.++..++.+|+.+..
T Consensus 80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 23567888888 78899999999999998853 3578999999999999999999999999853
Q ss_pred cHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHH
Q 043676 204 NDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISN 283 (446)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~ 283 (446)
...++.|..++.++++.++..|+.+|+.+.. ...++.|..++.++ ++.+|..|..+|.+
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET 200 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 1567889999999999999999999999853 12467788888888 89999999999999
Q ss_pred HhcC
Q 043676 284 ITAG 287 (446)
Q Consensus 284 l~~~ 287 (446)
+...
T Consensus 201 ~~~~ 204 (211)
T 3ltm_A 201 HKSF 204 (211)
T ss_dssp ----
T ss_pred cCCC
Confidence 8653
No 62
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.48 E-value=2.5e-12 Score=106.08 Aligned_cols=184 Identities=20% Similarity=0.196 Sum_probs=157.3
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676 45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD 124 (446)
Q Consensus 45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~ 124 (446)
+..+.+++.|.+++ +.+|..|++.|+.+.. .+.++.|+.++.++++.+|..++++|+.+.. +
T Consensus 14 ~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~---- 75 (201)
T 3ltj_A 14 EKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E---- 75 (201)
T ss_dssp HHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G----
T ss_pred cchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H----
Confidence 46889999999999 8999999999998865 2468999999999999999999999998852 1
Q ss_pred HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCc
Q 043676 125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTN 204 (446)
Q Consensus 125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~ 204 (446)
..++.++..+ .++++.++..++++|..+.. ...++.+..++.++++.++..++++++.+..
T Consensus 76 -----~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 76 -----RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp -----GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred -----HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 3578888888 77899999999999998753 3578999999999999999999999998753
Q ss_pred HHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHH
Q 043676 205 DKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNI 284 (446)
Q Consensus 205 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l 284 (446)
.+.++.|..++.++++.++..|+.+|+.+.. + ..++.+..++.++ ++.+|..|..+|.++
T Consensus 137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVNYLETH 196 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 2567889999999999999999999999842 1 2467788888888 899999999999987
Q ss_pred h
Q 043676 285 T 285 (446)
Q Consensus 285 ~ 285 (446)
.
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 3
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.47 E-value=4.4e-12 Score=122.32 Aligned_cols=365 Identities=11% Similarity=0.113 Sum_probs=240.4
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhh--cCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFL--MREDYPQLQYEAAWVLINIASGTSENT 81 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll--~~~~~~~~~~~a~~~L~~l~~~~~~~~ 81 (446)
+..+.+.++++|+.++-.|+.++.++.. ..+.+ .+++.+.+++ .+.+ +.+|..|+.++.++...+|+..
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~~-------~e~~~-~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~~~ 183 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVGS-------REMAE-AFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPDLV 183 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHCC-------HHHHH-HHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGGGC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccCC-------HHHHH-HHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChhhc
Confidence 4567778889999999999999988733 12333 4678888888 7777 9999999999999988555433
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc----c--c----------cch
Q 043676 82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN----E--H----------AKL 145 (446)
Q Consensus 82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~----~--~----------~~~ 145 (446)
. ..+.++.+.++|.++++.++..|+.++..++..++.. -...++.++..|. . . +++
T Consensus 184 ~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~-----~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~ 255 (621)
T 2vgl_A 184 P---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE-----FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAP 255 (621)
T ss_dssp C---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH-----HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESH
T ss_pred C---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCc
Confidence 2 2478999999999999999999999999999766541 1123344444331 1 1 156
Q ss_pred hHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhh---------cCCC--HhHHHHHHHHHHHhccCCcHHHHHHHHhC
Q 043676 146 SMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLV---------HSND--EDVLTYACWSLSYLADGTNDKIQAVIEAG 214 (446)
Q Consensus 146 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll---------~~~~--~~v~~~~~~~l~~l~~~~~~~~~~~~~~~ 214 (446)
-.+...+..|..++...+........+.++.++..+ ++.+ ..+...+..++..+.. .++... .
T Consensus 256 w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~ 329 (621)
T 2vgl_A 256 WLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----R 329 (621)
T ss_dssp HHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----H
T ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----H
Confidence 677788887777764321111111223333333322 1122 3788888888888763 222222 4
Q ss_pred cHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhc-cCchHHHHHHHHHHHHHHhcCCHHHHH
Q 043676 215 VCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLV-HNHEEIIKKEISWIISNITAGNREQIQ 293 (446)
Q Consensus 215 ~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~v~~~a~~~l~~l~~~~~~~~~ 293 (446)
++..|..++.+.++.++..++..+..++...+. . ..+ ......++..+. ++ +..+|..++.++..++. +.+..
T Consensus 330 ~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~-~~~-~~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv~ 403 (621)
T 2vgl_A 330 ACNQLGQFLQHRETNLRYLALESMCTLASSEFS-H-EAV-KTHIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNAQ 403 (621)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-H-HHH-HTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHHH
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-H-HHH-HHHHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhHH
Confidence 567788999889999999999999999976542 1 122 246678888888 77 89999999999999963 44444
Q ss_pred HHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676 294 AVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVG 373 (446)
Q Consensus 294 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 373 (446)
.++..|...+...+.+.+..++.+++.++....+.. . .++..|.+++......+...+...+..++...
T Consensus 404 -----~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~-~-----~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~ 472 (621)
T 2vgl_A 404 -----QIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY-T-----WYVDTILNLIRIAGDYVSEEVWYRVIQIVINR 472 (621)
T ss_dssp -----HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST-H-----HHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGG
T ss_pred -----HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH-H-----HHHHHHHHHHHhhcccchHHHHHHHHHHHhCC
Confidence 356678888888899999999999998875311111 1 14666777776544444444555555555443
Q ss_pred hhhhcccCCCCccchHHHHHHHhChHHHH-HHhhcCC-CHHHHHHHHHHHHHhcC
Q 043676 374 EAERNMGTTIGDVNQYAQFVEEAGGLEKI-ENLQSHD-NNEIHEKSVKIFKTYWC 426 (446)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l-~~l~~~~-~~~v~~~a~~~l~~~~~ 426 (446)
+..+ ... +..+ +.+.... ...+.+.+.|++..|-+
T Consensus 473 ~~~~-------------~~~-----~~~l~~~l~~~~~~~~li~~~~wilGEy~~ 509 (621)
T 2vgl_A 473 DDVQ-------------GYA-----AKTVFEALQAPACHENLVKVGGYILGEFGN 509 (621)
T ss_dssp CSCH-------------HHH-----HHHHHHHHTSSSCCHHHHHHHHHHHHHHTH
T ss_pred hhHH-------------HHH-----HHHHHHHHcCccchHHHHHHHHHHhcchHH
Confidence 3321 111 2222 2233222 34667788899998854
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.45 E-value=1.7e-10 Score=111.30 Aligned_cols=328 Identities=14% Similarity=0.114 Sum_probs=233.9
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN 82 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 82 (446)
.++..++.+.+.+...+..+.-++..++... + +.+.- +++.+.+-+++++ +.++..|+++++++.. ++...
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~--~--e~~~L--~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~ 145 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSN--S--ELIRL--INNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE 145 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC--H--HHHHH--HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccCC--c--HHHHH--HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH
Confidence 3567788899999999998888887765542 2 22211 3667777888999 9999999999999965 55443
Q ss_pred HHHhcCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676 83 VVIDHGAVPIFVKLL--SSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR 160 (446)
Q Consensus 83 ~~~~~~~i~~L~~~L--~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 160 (446)
. +++.+.+++ .+.++.+|..|+.++.++....|+. +...+.++.+..+| .+.++.++.+++.++..++.
T Consensus 146 ~-----l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 146 A-----FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp H-----HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHH
Confidence 3 468889999 8899999999999999999765542 21236788888888 78899999999999999988
Q ss_pred CCCCCChhhhhhhHHHHH----HhhcCC-------------CHhHHHHHHHHHHHhccCC-cHHHHHHHHhCcHHHHHHh
Q 043676 161 GKPEPPFDQVRPALPALA----QLVHSN-------------DEDVLTYACWSLSYLADGT-NDKIQAVIEAGVCPRLVEL 222 (446)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~----~ll~~~-------------~~~v~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~l~~l 222 (446)
..+. .....+|.++ .++..+ ++..+..++..+..++... +.....+. +.++.++..
T Consensus 217 ~~~~----~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~ 290 (621)
T 2vgl_A 217 KNPE----EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNK 290 (621)
T ss_dssp HCHH----HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHH
T ss_pred hChH----HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHh
Confidence 6532 1223444444 443221 6889999999999988653 33333222 234444433
Q ss_pred cCC-C----------CccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHH
Q 043676 223 LGH-P----------SPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQ 291 (446)
Q Consensus 223 l~~-~----------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~ 291 (446)
+.+ + ...+...|+.++..+.. .++... .++..+..++.++ ++.+|..|+.++..++...+.
T Consensus 291 ~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~- 362 (621)
T 2vgl_A 291 AQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS- 362 (621)
T ss_dssp HHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT-
T ss_pred hccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc-
Confidence 211 1 22667778888877753 332222 2567788888877 899999999999999875431
Q ss_pred HHHHHHcCChHHHHHHHh-cCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHH
Q 043676 292 IQAVIDAGLIRPIVNLLQ-NAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENIL 370 (446)
Q Consensus 292 ~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~ 370 (446)
.. ++. .....++..+. +.|..++..++..|..++. +.+... ++..|.+.+.+.+.+++..++..+..+.
T Consensus 363 ~~-~~~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~---~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la 432 (621)
T 2vgl_A 363 HE-AVK-THIETVINALKTERDVSVRQRAVDLLYAMCD---RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILA 432 (621)
T ss_dssp HH-HHH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC---HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HH-HHH-HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC---hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 11 222 46778888888 8899999999999999974 455555 4566777887888999988888888876
Q ss_pred Hh
Q 043676 371 KV 372 (446)
Q Consensus 371 ~~ 372 (446)
..
T Consensus 433 ~k 434 (621)
T 2vgl_A 433 EK 434 (621)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 65
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.33 E-value=3e-10 Score=86.37 Aligned_cols=217 Identities=14% Similarity=0.185 Sum_probs=178.8
Q ss_pred hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC
Q 043676 86 DHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEP 165 (446)
Q Consensus 86 ~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 165 (446)
+..+++.++.+|.+.-+.++.+|+..+.+++...|+..+.+ +..|+.++.++...+.......+++.++...|
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-- 102 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-- 102 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence 44678999999999999999999999999998888765554 45788888788888888889999999987653
Q ss_pred ChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCC
Q 043676 166 PFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGD 245 (446)
Q Consensus 166 ~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~ 245 (446)
....+.+|.+..-.+-++++++.....+|..++..+|.... +++.-+..++.+++..-+..|+..++.+....
T Consensus 103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS 175 (253)
T ss_dssp --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence 35567788888888888999999999999999998886655 66677889999988888888999998888765
Q ss_pred chhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHH
Q 043676 246 DFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISN 325 (446)
Q Consensus 246 ~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 325 (446)
..... -.+|.+..+|.+. +.-||..|+.+|.+++..++..+.. +..-+.=+++.+..++.....+|+.
T Consensus 176 ~~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 176 FKYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp HHHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred ccccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 54433 4689999999999 9999999999999999888885543 3334555777788899999999988
Q ss_pred hcc
Q 043676 326 ATS 328 (446)
Q Consensus 326 l~~ 328 (446)
+..
T Consensus 244 l~l 246 (253)
T 2db0_A 244 LLL 246 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 66
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.17 E-value=1.1e-09 Score=87.12 Aligned_cols=225 Identities=16% Similarity=0.162 Sum_probs=172.3
Q ss_pred hhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhH
Q 043676 171 RPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQ 250 (446)
Q Consensus 171 ~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~ 250 (446)
.+.+..+..++...|+.++..++.++..+....+.......-..+++.++.++.+.+..+...|+.++..+..+.+-.-.
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 45788899999999999999999999999987655555555558999999999999999999999999999987664444
Q ss_pred HHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCC
Q 043676 251 CIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGG 330 (446)
Q Consensus 251 ~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 330 (446)
.+. .+...+..+++++ ++-.+.+++-.++.+--.+.. .+++..+..++.+.+.+++..++.++.+++...
T Consensus 112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 333 2567888999987 899999999999988322211 136677888888899999999999999998754
Q ss_pred C-HHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhh-cC
Q 043676 331 T-QEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQ-SH 408 (446)
Q Consensus 331 ~-~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~ 408 (446)
+ ++.. .+++.-+-+++++.|+.++..|+.++..++...-... ..... .+.......+. -.
T Consensus 182 ~D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~----------~~~~~---~~~~~~v~~l~~~~ 243 (265)
T 3b2a_A 182 ADSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLEN----------VKIEL---LKISRIVDGLVYRE 243 (265)
T ss_dssp SSCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSC----------CHHHH---HHHHHHHHHGGGCS
T ss_pred CCHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHh----------HHHHH---HHHHHHHHHHHHhc
Confidence 2 2222 2367778889999999999999999999987633221 11111 23345567887 66
Q ss_pred CCHHHHHHHHHHHHH
Q 043676 409 DNNEIHEKSVKIFKT 423 (446)
Q Consensus 409 ~~~~v~~~a~~~l~~ 423 (446)
..|.++.+|..+-+.
T Consensus 244 ~~~~~~~ka~~v~~~ 258 (265)
T 3b2a_A 244 GAPIIRLKAKKVSDL 258 (265)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHH
Confidence 778998888876654
No 67
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.17 E-value=2.2e-09 Score=94.29 Aligned_cols=276 Identities=11% Similarity=0.036 Sum_probs=164.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV 83 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 83 (446)
++.+++.+.++|..++...--.+..++... .+. + =++..|.+=+++++ +-+|..|+++|+++.. ++..+.
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~----i--Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~~~ 139 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDV----I--IVTSSLTKDMTGKE-DSYRGPAVRALCQITD--STMLQA 139 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCG----G--GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHH----H--HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHHHH
Confidence 345678899999999998888888766642 221 1 24777888889999 8999999999999986 444333
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 043676 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP 163 (446)
Q Consensus 84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 163 (446)
+.+.+.+.+.+.++.||..|+.+..++....|+.. .+.+..+-.++ .+.++-++.+++.+|..+...+
T Consensus 140 -----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d- 207 (355)
T 3tjz_B 140 -----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND- 207 (355)
T ss_dssp -----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC-
T ss_pred -----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc-
Confidence 35778889999999999999999999998887642 25788888888 7788899999999999998753
Q ss_pred CCChhhhhhhHHHHHHhhcCC---CHhHHHHHHHHHHHhccCC-cHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHH
Q 043676 164 EPPFDQVRPALPALAQLVHSN---DEDVLTYACWSLSYLADGT-NDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVG 239 (446)
Q Consensus 164 ~~~~~~~~~~~~~l~~ll~~~---~~~v~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~ 239 (446)
...+..++..+... ++-.+...++.+..++..+ +.. ...+++.+..++++.++.|..+|+.++.
T Consensus 208 -------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~~~aVvyEa~k~I~ 275 (355)
T 3tjz_B 208 -------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR-----DSPLFDFIESCLRNKHEMVVYEAASAIV 275 (355)
T ss_dssp -------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHT
T ss_pred -------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 22444555555442 5666666777776666554 222 2367788899999999999999999998
Q ss_pred HhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHH
Q 043676 240 NIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEA 319 (446)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 319 (446)
.+....... . ..++..+..++.++ ++.+|-.|+..|..+....|...+ ..-..+.+++.+++..+...|
T Consensus 276 ~l~~~~~~~----~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~-----~~n~~ie~li~d~n~sI~t~A 344 (355)
T 3tjz_B 276 NLPGCSAKE----L-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVT-----ACNLDLENLVTDANRSIATLA 344 (355)
T ss_dssp C----------------CCCTHHHHHHSS-SSSSHHHHHHCC--------------------------------------
T ss_pred hccCCCHHH----H-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHH-----HHHHHHHHHccCCcHhHHHHH
Confidence 886532221 1 23456677778777 889999999999999776565433 234456778888887776666
Q ss_pred HHHHH
Q 043676 320 AWAIS 324 (446)
Q Consensus 320 ~~aL~ 324 (446)
+.+|.
T Consensus 345 ittll 349 (355)
T 3tjz_B 345 ITTLL 349 (355)
T ss_dssp -----
T ss_pred HHHhh
Confidence 65554
No 68
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.14 E-value=2.6e-10 Score=111.54 Aligned_cols=198 Identities=14% Similarity=0.109 Sum_probs=149.3
Q ss_pred HHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHH-HHhhCCCCHHHHHHHHHHHHHhhC-C
Q 043676 41 VIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIF-VKLLSSPSDDVREQAVWALGNVAG-D 118 (446)
Q Consensus 41 ~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L-~~~L~~~~~~v~~~a~~~l~~l~~-~ 118 (446)
..+..++| +++.|++++ ++.|..|+++|++++. ++..+..+...+++..+ ..+|.+++.++|..|+++|.||+. .
T Consensus 31 ~~~~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 31 LREDKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp HHHHTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred cchhhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 34445555 567789999 8999999999999998 88999999988888775 557899999999999999999995 4
Q ss_pred ChHHHHHHHHcCChHHHHHHhccccc--------------------hhHHHHHHHHHHHhhcCCCC-CChhhhhhhHHHH
Q 043676 119 SPRCRDLVLSQGALIPLLAELNEHAK--------------------LSMLRNATRTLSNFCRGKPE-PPFDQVRPALPAL 177 (446)
Q Consensus 119 ~~~~~~~~~~~~~i~~l~~~l~~~~~--------------------~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~l 177 (446)
.+.....+...|++++|..++.+... ..+..+++.+|++||..... .......+.++.+
T Consensus 108 g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l 187 (684)
T 4gmo_A 108 EADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRL 187 (684)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHH
T ss_pred CchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHH
Confidence 56778889999999999988842110 13456778889999877522 2223346788888
Q ss_pred HHhhcCC---CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHH---HHHHhcCCCCccchhHHHHHHHHhh
Q 043676 178 AQLVHSN---DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCP---RLVELLGHPSPSVLTPALRTVGNIV 242 (446)
Q Consensus 178 ~~ll~~~---~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~---~l~~ll~~~~~~~~~~a~~~l~~l~ 242 (446)
+..+.+. ..+++..++.+|..++..++...+.+.+.+... .+..+. ..+...+..+++++.|+.
T Consensus 188 ~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~-~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 188 LFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLA-TGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHH-HSSCTTHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHh-cCCcHHHHHHHHHHHhHh
Confidence 8887533 468999999999999999888888777765432 333332 344455778888888874
No 69
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.13 E-value=1.2e-08 Score=77.71 Aligned_cols=217 Identities=14% Similarity=0.145 Sum_probs=170.8
Q ss_pred cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-CCCHhHHHHHHHHHHHhccCCcHHH
Q 043676 129 QGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH-SNDEDVLTYACWSLSYLADGTNDKI 207 (446)
Q Consensus 129 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~ 207 (446)
..++..++..| ++.-..++.+++..+.++++..+ ......+..|+.+++ +..........++++.++...|+..
T Consensus 31 ~~~l~~lI~~L-DDDlwtV~kNAl~vi~~i~~~~~----el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v 105 (253)
T 2db0_A 31 ESVLKKLIELL-DDDLWTVVKNAISIIMVIAKTRE----DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV 105 (253)
T ss_dssp HHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCG----GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHh-ccHHHHHHHhHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence 34577888888 66667899999999999988753 234556667777765 5567788889999999998888777
Q ss_pred HHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC
Q 043676 208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG 287 (446)
Q Consensus 208 ~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~ 287 (446)
. +.+|.+..-..-.++.++.....+|..++..+|.... +++..+..++.++ +..=|..|+..++.+...
T Consensus 106 ~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltsk-d~~Dkl~aLnFi~alGen 174 (253)
T 2db0_A 106 K-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSK-NREDKLTALNFIEAMGEN 174 (253)
T ss_dssp H-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCS-SHHHHHHHHHHHHTCCTT
T ss_pred H-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcc
Confidence 6 7778898888889999999999999999998887554 3567799999988 777777788777777554
Q ss_pred CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHH
Q 043676 288 NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLE 367 (446)
Q Consensus 288 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~ 367 (446)
..... ...+|.|+.++.+++.-+|..|..+|.+++.. ++..++. +...++-+++.++.++..+-.+|.
T Consensus 175 ~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~-npklRki------i~~kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 175 SFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATL-NDKLRKV------VIKRLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp THHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS-CHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHH
T ss_pred Ccccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHc-CHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHH
Confidence 44432 25899999999999999999999999999987 4554444 344556678888999999999999
Q ss_pred HHHHhh
Q 043676 368 NILKVG 373 (446)
Q Consensus 368 ~l~~~~ 373 (446)
.+.-..
T Consensus 243 rl~l~e 248 (253)
T 2db0_A 243 RLLLLE 248 (253)
T ss_dssp HHHHC-
T ss_pred HHHHHh
Confidence 876543
No 70
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.13 E-value=3e-09 Score=103.90 Aligned_cols=274 Identities=14% Similarity=0.104 Sum_probs=191.2
Q ss_pred hHHHHHhhc---CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC-------ChHHHHHHHHHHHHH
Q 043676 4 FPALVAGVW---SDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRED-------YPQLQYEAAWVLINI 73 (446)
Q Consensus 4 i~~l~~~l~---s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~-------~~~~~~~a~~~L~~l 73 (446)
+..|-+.|. ++++.++.-|+..|.-+..+. .. .++..|...+.+++ .+.++..|+..|+-+
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~--~~-------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGF--GR-------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTT--TH-------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCC--cH-------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 455556666 677889999999998766653 11 14677777776544 367898999999998
Q ss_pred cCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHH
Q 043676 74 ASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATR 153 (446)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~ 153 (446)
..++.. . .+++.|..++.+.+..+++.|..+|+.+..+.... + ++..++..+..+.+..+++.++.
T Consensus 465 ~~GS~~--e-----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-~------ai~~LL~~~~e~~~e~vrR~aal 530 (963)
T 4ady_A 465 AMGSAN--I-----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-E------AIHDMFTYSQETQHGNITRGLAV 530 (963)
T ss_dssp STTCCC--H-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-H------HHHHHHHHHHHCSCHHHHHHHHH
T ss_pred hcCCCC--H-----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-H------HHHHHHHHHhccCcHHHHHHHHH
Confidence 653321 1 24677888888877778888999998774332211 1 24566666545667889999999
Q ss_pred HHHHhhcCCCCCChhhhhhhHHHHHHhhc-CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHH-hcCCCCccch
Q 043676 154 TLSNFCRGKPEPPFDQVRPALPALAQLVH-SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVE-LLGHPSPSVL 231 (446)
Q Consensus 154 ~L~~l~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~-ll~~~~~~~~ 231 (446)
+|+.+.... ...++.++..|. +.++-+|..++.+++.-..+..+. ..++.|++ +..+.+..+|
T Consensus 531 gLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~VR 595 (963)
T 4ady_A 531 GLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDDVR 595 (963)
T ss_dssp HHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHHHH
T ss_pred HHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHHHH
Confidence 999886654 244566666665 467888888888776544332221 12332333 3345677899
Q ss_pred hHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC
Q 043676 232 TPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA 311 (446)
Q Consensus 232 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~ 311 (446)
..|+..|+.+..++++ .++.++.++.+..++.+|..|+++++.++.+++.. .++..|..+..+.
T Consensus 596 raAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~~D~ 659 (963)
T 4ady_A 596 RAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLTKDP 659 (963)
T ss_dssp HHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHHTCS
T ss_pred HHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHccCC
Confidence 9999999998876653 35666665554449999999999999998765431 2667788888999
Q ss_pred CcchHHHHHHHHHHhccCCC
Q 043676 312 EFDTKKEAAWAISNATSGGT 331 (446)
Q Consensus 312 ~~~v~~~a~~aL~~l~~~~~ 331 (446)
+..|++.|+.+|+.+....+
T Consensus 660 d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 660 VDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp SHHHHHHHHHHHHHHSTTCC
T ss_pred CHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999987643
No 71
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=99.04 E-value=8.1e-08 Score=86.27 Aligned_cols=322 Identities=12% Similarity=0.141 Sum_probs=196.8
Q ss_pred cCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCh---HHHHHHHHcCChH-HHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676 87 HGAVPIFVKLLSS-PSDDVREQAVWALGNVAGDSP---RCRDLVLSQGALI-PLLAELNEHAKLSMLRNATRTLSNFCRG 161 (446)
Q Consensus 87 ~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~---~~~~~~~~~~~i~-~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 161 (446)
..++..++.+|.. .+.++.+..+..+.-+....+ .....+.+..... .+........+.-....++.++..++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 4567888898876 778999999999999987766 3333333332221 2233222233344445666665666544
Q ss_pred CCCCChhhhhhhHH--HHHHhhcCC-CHhHHHHHHHHHHHhccCCcHHHHHHHHh--CcHHHHHHhcC----CC------
Q 043676 162 KPEPPFDQVRPALP--ALAQLVHSN-DEDVLTYACWSLSYLADGTNDKIQAVIEA--GVCPRLVELLG----HP------ 226 (446)
Q Consensus 162 ~~~~~~~~~~~~~~--~l~~ll~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~--~~~~~l~~ll~----~~------ 226 (446)
.+. .......++. .+...+... +...+.-++.++..+......+. .+.+. .+++.++.+++ +.
T Consensus 156 ~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~-~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 156 GLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRD-VIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHH-HHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHH-HHHHcccchhHHHHHHHHHhhccccccccc
Confidence 322 2333344444 445555542 44556678888888877644332 34332 24555544322 11
Q ss_pred -------CccchhHHHHHHHHhhcCCchhhHHHHhcCCh--HHHHHHhccCchHHHHHHHHHHHHHHhcCC----HHHHH
Q 043676 227 -------SPSVLTPALRTVGNIVTGDDFQTQCIINHGAV--PYLLDMLVHNHEEIIKKEISWIISNITAGN----REQIQ 293 (446)
Q Consensus 227 -------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~----~~~~~ 293 (446)
...++..++.|++-++.. +.....+...++. ..++.+++....+++..-++.++.|+.... .....
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~ 312 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 312 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence 133567889999988874 4455556555543 567777776656788888999999998754 22223
Q ss_pred H-HHHcCChHHHHHHHhcC---CcchHHHHHHHHHHhcc---------------------CC----C----HHHHHHHHH
Q 043676 294 A-VIDAGLIRPIVNLLQNA---EFDTKKEAAWAISNATS---------------------GG----T----QEQIKHLVR 340 (446)
Q Consensus 294 ~-~~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~l~~---------------------~~----~----~~~~~~l~~ 340 (446)
. ++..++ +++++.+... |+++....-.....+-. .+ + .++...|.+
T Consensus 313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e 391 (480)
T 1ho8_A 313 QLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK 391 (480)
T ss_dssp HHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred HHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence 2 333344 4455666543 55554332222221111 00 1 112222222
Q ss_pred c--CChHHHHhcccC----------CCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcC
Q 043676 341 E--GCVKPLCDLLLC----------SDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSH 408 (446)
Q Consensus 341 ~--~~i~~L~~ll~~----------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~ 408 (446)
+ ..+..|+++|++ .|+.+...||.=+..+++..+.. +..+.+.|+-+.+.+|++|
T Consensus 392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~g-------------r~i~~~lg~K~~VM~Lm~h 458 (480)
T 1ho8_A 392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-------------IDVLDKTGGKADIMELLNH 458 (480)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-------------HHHHHHHSHHHHHHHHTSC
T ss_pred cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcch-------------hHHHHHcCcHHHHHHHhcC
Confidence 2 247788888873 46788889999999999988876 5888999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc
Q 043676 409 DNNEIHEKSVKIFKTYW 425 (446)
Q Consensus 409 ~~~~v~~~a~~~l~~~~ 425 (446)
++++|+..|..+++++.
T Consensus 459 ~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 459 SDSRVKYEALKATQAII 475 (480)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999888763
No 72
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.04 E-value=6.2e-09 Score=91.47 Aligned_cols=277 Identities=12% Similarity=0.110 Sum_probs=159.7
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676 45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD 124 (446)
Q Consensus 45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~ 124 (446)
.+....++++++++ ..+|...-..+.+++...++.. =++..+.+=++++++-+|..|+++++++.... ..+
T Consensus 68 ~lf~~v~kl~~s~d-~~lKrLvYLyl~~~~~~~~e~i------Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~~ 138 (355)
T 3tjz_B 68 EAFFAMTKLFQSND-PTLRRMCYLTIKEMSCIAEDVI------IVTSSLTKDMTGKEDSYRGPAVRALCQITDST--MLQ 138 (355)
T ss_dssp HHHHHHHGGGGCCC-HHHHHHHHHHHHHHTTTSSCGG------GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--THH
T ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHHHHH------HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HHH
Confidence 35667788999999 8999999989989887433321 24678888888999999999999999998443 212
Q ss_pred HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCc
Q 043676 125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTN 204 (446)
Q Consensus 125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~ 204 (446)
. ..+.+-+.+ .+.++.++..|+.+...+....|. ...++++.+..++.+.++.++.+++.++..+...+.
T Consensus 139 ~-----l~~~lk~~L-~d~~pyVRk~A~l~~~kL~~~~pe----~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~ 208 (355)
T 3tjz_B 139 A-----IERYMKQAI-VDKVPSVSSSALVSSLHLLKCSFD----VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR 208 (355)
T ss_dssp H-----HHHHHHHHH-TCSSHHHHHHHHHHHHHHTTTCHH----HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred H-----HHHHHHHHc-CCCCHHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch
Confidence 2 234566666 788999999999999999876532 345789999999999999999999999999987654
Q ss_pred HHHHHHHHhCcHHHHHHhcCCC---CccchhHHHHHHHHhhcCC-chhhHHHHhcCChHHHHHHhccCchHHHHHHHHHH
Q 043676 205 DKIQAVIEAGVCPRLVELLGHP---SPSVLTPALRTVGNIVTGD-DFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWI 280 (446)
Q Consensus 205 ~~~~~~~~~~~~~~l~~ll~~~---~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~ 280 (446)
... ..++..+... ++-.+...+..+..++..+ +. ....+++.+..+|++. ++.|.-+|+.+
T Consensus 209 ~a~---------~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~-~~aVvyEa~k~ 273 (355)
T 3tjz_B 209 LAV---------SKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNK-HEMVVYEAASA 273 (355)
T ss_dssp HHH---------HHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCS-SHHHHHHHHHH
T ss_pred HHH---------HHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCC-ChHHHHHHHHH
Confidence 222 2223333221 2222222333333443333 11 2245678888889988 89999999999
Q ss_pred HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHH
Q 043676 281 ISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT 360 (446)
Q Consensus 281 l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~ 360 (446)
+..+...+.. .. ..++..+..++.+.++.+|..|+..|..+... .|+.... +-..+.+++.++|..+..
T Consensus 274 I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~-~P~~v~~-----~n~~ie~li~d~n~sI~t 342 (355)
T 3tjz_B 274 IVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMK-HPSAVTA-----CNLDLENLVTDANRSIAT 342 (355)
T ss_dssp HTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-------------------------------------
T ss_pred HHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-CcHHHHH-----HHHHHHHHccCCcHhHHH
Confidence 9988442221 11 24567777888899999999999999999875 3333322 456688889999988887
Q ss_pred HHHHHH
Q 043676 361 VCLIGL 366 (446)
Q Consensus 361 ~~~~~l 366 (446)
.|+..|
T Consensus 343 ~Aittl 348 (355)
T 3tjz_B 343 LAITTL 348 (355)
T ss_dssp ------
T ss_pred HHHHHh
Confidence 766554
No 73
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.01 E-value=1.8e-09 Score=105.54 Aligned_cols=198 Identities=13% Similarity=0.045 Sum_probs=148.3
Q ss_pred hhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHH-HHhcCCCCccchhHHHHHHHHhhcC-Cchhh
Q 043676 172 PALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRL-VELLGHPSPSVLTPALRTVGNIVTG-DDFQT 249 (446)
Q Consensus 172 ~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l-~~ll~~~~~~~~~~a~~~l~~l~~~-~~~~~ 249 (446)
.++| +++.|+++++..|..|+++|.+++.. +...+.+...+++..+ ..++.+++..+|..|+++|.||+.. ..+.+
T Consensus 35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHH-HHHHHSSSCCSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHH-HHHHcCCCCHHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 3445 55678999999999999999999974 4455567777888765 5678889999999999999999864 45677
Q ss_pred HHHHhcCChHHHHHHhccCch--------------------HHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 043676 250 QCIINHGAVPYLLDMLVHNHE--------------------EIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQ 309 (446)
Q Consensus 250 ~~~~~~~~~~~l~~~l~~~~~--------------------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 309 (446)
..++..++++.|..+++.... ..+...++.+|.+++.++.+....+...+.++.|+..+.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 788899999999988854200 123456778899998888888888888899999999885
Q ss_pred cC---CcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcc--cCCCHHHHHHHHHHHHHHHHh
Q 043676 310 NA---EFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLL--LCSDPEIVTVCLIGLENILKV 372 (446)
Q Consensus 310 ~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll--~~~~~~~~~~~~~~l~~l~~~ 372 (446)
+. ..+++..|+.+|..++.. +++....+.+.+....+..++ ...+...+..++++|.+++..
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~~~ 259 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVFTS 259 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHhhh
Confidence 43 357999999999999876 567777777765433322222 223333456678888888653
No 74
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.96 E-value=1.7e-07 Score=91.84 Aligned_cols=271 Identities=14% Similarity=0.096 Sum_probs=186.8
Q ss_pred CHHHHHHhhc---CCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCC--------HHHHHHHHHHHHH
Q 043676 46 VVPRFVEFLM---REDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPS--------DDVREQAVWALGN 114 (446)
Q Consensus 46 ~~~~L~~ll~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~--------~~v~~~a~~~l~~ 114 (446)
++..|-+.|. +++ +.++.-|+.+|+.+..+... .++..|...|.+++ +.++..|+..|+-
T Consensus 393 gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 393 GKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4666666666 455 78999999999999874432 13677777776644 6788899999998
Q ss_pred hhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhh-cCCCHhHHHHHH
Q 043676 115 VAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLV-HSNDEDVLTYAC 193 (446)
Q Consensus 115 l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll-~~~~~~v~~~~~ 193 (446)
+..++.. +. ++..|...+ .+.+...+..++.+|+.+..+..+ ...+..|+..+ .+.+..+++.+.
T Consensus 464 a~~GS~~--ee-----v~e~L~~~L-~dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 464 AAMGSAN--IE-----VYEALKEVL-YNDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HSTTCCC--HH-----HHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhcCCCC--HH-----HHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHHH
Confidence 7644321 11 345677777 444555667888888876554322 23445555544 355789999999
Q ss_pred HHHHHhccCCcHHHHHHHHhCcHHHHHHhcC-CCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHH
Q 043676 194 WSLSYLADGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEI 272 (446)
Q Consensus 194 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 272 (446)
.+|+.+....++.. +.++..|. +.++.+|..++.+++.-..+..... .++.|+..+.+..+..
T Consensus 530 lgLGll~~g~~e~~---------~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~-------aIq~LL~~~~~d~~d~ 593 (963)
T 4ady_A 530 VGLALINYGRQELA---------DDLITKMLASDESLLRYGGAFTIALAYAGTGNNS-------AVKRLLHVAVSDSNDD 593 (963)
T ss_dssp HHHHHHTTTCGGGG---------HHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH-------HHHHHHHHHHHCSCHH
T ss_pred HHHHhhhCCChHHH---------HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHhccCCcHH
Confidence 99998887766444 44444444 4677788888888775554443321 3565666654443788
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHH-HhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcc
Q 043676 273 IKKEISWIISNITAGNREQIQAVIDAGLIRPIVNL-LQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLL 351 (446)
Q Consensus 273 v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll 351 (446)
+|..|+.+|+.+..+.+ ..++.++.+ .++.++.+|..|+.+|+.++.+..... +++.|..+.
T Consensus 594 VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~--------aid~L~~L~ 656 (963)
T 4ady_A 594 VRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS--------AIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH--------HHHHHHHHc
Confidence 99999999999876654 256666664 456799999999999999976533211 466778888
Q ss_pred cCCCHHHHHHHHHHHHHHHHh
Q 043676 352 LCSDPEIVTVCLIGLENILKV 372 (446)
Q Consensus 352 ~~~~~~~~~~~~~~l~~l~~~ 372 (446)
++.++.|+..|+.+|..+..-
T Consensus 657 ~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 657 KDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp TCSSHHHHHHHHHHHHHHSTT
T ss_pred cCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999986643
No 75
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.94 E-value=5.4e-09 Score=88.65 Aligned_cols=185 Identities=15% Similarity=0.241 Sum_probs=143.3
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-CCCHhHHHHHHHHHHHhccCCcHHHHHHHH
Q 043676 134 PLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH-SNDEDVLTYACWSLSYLADGTNDKIQAVIE 212 (446)
Q Consensus 134 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~ 212 (446)
.+...+ .+.+...+..++..|..+....+.........+++.+...+. +.+..++..++.+++.++..-........
T Consensus 19 ~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~- 96 (242)
T 2qk2_A 19 DFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA- 96 (242)
T ss_dssp THHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH-
T ss_pred HHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH-
Confidence 466777 688999999999999999887322212234678889999995 88999999999999999964333232222
Q ss_pred hCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CHHH
Q 043676 213 AGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NREQ 291 (446)
Q Consensus 213 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~ 291 (446)
..+++.++..+.+.+..+|..|..++..++.... .. .+++.+...+++. ++.+|..++..|+.+... .+..
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCC
Confidence 3688999999999999999999999999987543 11 2578889999988 899999999999997543 2321
Q ss_pred -HHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccC
Q 043676 292 -IQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSG 329 (446)
Q Consensus 292 -~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 329 (446)
....+. .++|.+..++.+.++++|..|..+++.++..
T Consensus 169 ~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 169 LNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp CCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 122222 5899999999999999999999999999764
No 76
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.93 E-value=5.1e-08 Score=77.77 Aligned_cols=185 Identities=15% Similarity=0.139 Sum_probs=148.4
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV 83 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 83 (446)
+..+..+|+..|+.++..++.+|.++.... +...+...-..+++.+++++.+.+ +.+...|++||..+..+.|-....
T Consensus 35 l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 35 LFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCHHH
Confidence 567888999999999999999999999874 333444444467999999999999 899999999999999866655555
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 043676 84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP 163 (446)
Q Consensus 84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 163 (446)
+.. ++.++...+.++++-++..++..++.+--..+. + . .+..+.+++ .+.+..++..++.++.+++....
T Consensus 113 y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~-~-~-----V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 113 FLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS-K-L-----VRTYINELV-VSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC-H-H-----HHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch-H-H-----HHHHHHHHH-hCCChhHHHHHHHHHHHhhcccC
Confidence 543 468899999999999999999999998422221 1 1 346777788 89999999999999999998752
Q ss_pred CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccC
Q 043676 164 EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADG 202 (446)
Q Consensus 164 ~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~ 202 (446)
+.....+++.-+-.++++.|+.+++.++.++-.+...
T Consensus 183 --D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 183 --DSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp --SCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred --CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 2234456677788899999999999999999998865
No 77
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.85 E-value=2e-08 Score=85.10 Aligned_cols=185 Identities=12% Similarity=0.094 Sum_probs=139.6
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhc-CCCChHHHHHHHHHHHHHcCCChhhHHHH
Q 043676 6 ALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLM-REDYPQLQYEAAWVLINIASGTSENTNVV 84 (446)
Q Consensus 6 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 84 (446)
.+.+.+.+.+...|..|+..|..++.+...-..... ..+++.|...+. +.+ ..++..|+.+++.++..-.......
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~-~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSN-VVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 578889999999999999999998876211000001 135777888885 777 8999999999999996221111111
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-C
Q 043676 85 IDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK-P 163 (446)
Q Consensus 85 ~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~ 163 (446)
. ..+++.++..+.++++.+|+.+..++..++...+ .. ..++.+...+ ++.++.++..++..|..+.... +
T Consensus 96 ~-~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~------~ll~~l~~~l-~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 96 A-SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LE------AQQESIVESL-SNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp H-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HH------HHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HH------HHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcCC
Confidence 1 2468999999999999999999999999986543 11 1456777888 6778999999999999976554 3
Q ss_pred C-CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccC
Q 043676 164 E-PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADG 202 (446)
Q Consensus 164 ~-~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~ 202 (446)
. ........++|.+..++.+.++++|..+..+++.++..
T Consensus 167 ~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 167 TALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 2 23345578999999999999999999999999988754
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.85 E-value=2.2e-08 Score=84.68 Aligned_cols=192 Identities=10% Similarity=0.107 Sum_probs=141.3
Q ss_pred HHHHhccccchhHHHHHHHHHHH-hhcCCCCCC--hhhhhhhHHHHHHhh-cCCCHhHHHHHHHHHHHhccCCc-HHHH-
Q 043676 135 LLAELNEHAKLSMLRNATRTLSN-FCRGKPEPP--FDQVRPALPALAQLV-HSNDEDVLTYACWSLSYLADGTN-DKIQ- 208 (446)
Q Consensus 135 l~~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~--~~~~~~~~~~l~~ll-~~~~~~v~~~~~~~l~~l~~~~~-~~~~- 208 (446)
+...+ .+.+..-|..++..|.. ++.+.+... ......++..+...+ .+.+..++..++.+++.++..-. ....
T Consensus 21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 44555 67889999999999999 886543322 223357788889999 68899999999999999985432 1221
Q ss_pred HHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCC
Q 043676 209 AVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGN 288 (446)
Q Consensus 209 ~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~ 288 (446)
... ..+++.++..+++....++..+..++..++...+.......-..+++.+...+++. ++.+|..++.+|..++...
T Consensus 100 ~y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence 122 25789999999998899999988888888864421110000012567888999998 8999999999999998633
Q ss_pred H---HHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccC
Q 043676 289 R---EQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSG 329 (446)
Q Consensus 289 ~---~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 329 (446)
+ ......+...++|.+.+++.+.++.+|..|..+++.++..
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 2 3333444247999999999999999999999999998653
No 79
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.74 E-value=1e-07 Score=80.64 Aligned_cols=189 Identities=13% Similarity=0.176 Sum_probs=139.5
Q ss_pred HHHhhcCCCChHHHHHHHHHHHH-HcCCChhhHHHHHh-cCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCC--hHHH-
Q 043676 50 FVEFLMREDYPQLQYEAAWVLIN-IASGTSENTNVVID-HGAVPIFVKLL-SSPSDDVREQAVWALGNVAGDS--PRCR- 123 (446)
Q Consensus 50 L~~ll~~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~-~~~i~~L~~~L-~~~~~~v~~~a~~~l~~l~~~~--~~~~- 123 (446)
+.+.+.+.+ ..-|..|+..|.. ++.+.++....-.+ ..++..|.+.+ ++.+..++..|+.+++.++.+- +...
T Consensus 21 f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 456678888 6889999999999 87533322100000 13467788888 7899999999999999998422 1221
Q ss_pred HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh--hhhhHHHHHHhhcCCCHhHHHHHHHHHHHhcc
Q 043676 124 DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQ--VRPALPALAQLVHSNDEDVLTYACWSLSYLAD 201 (446)
Q Consensus 124 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~ 201 (446)
..... .++.++..+ .+....++..+..++..++...+. .... ...+++.+...+++.++.++..++.+|..++.
T Consensus 100 ~y~~~--llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 100 DYVSL--VFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHHHH--HHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 22211 577888888 667788999999999999886522 2222 56789999999999999999999999999986
Q ss_pred CCc---HHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676 202 GTN---DKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT 243 (446)
Q Consensus 202 ~~~---~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~ 243 (446)
... ......+...+++.+..++.+.++.+|..|..+++.++.
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 554 333233324899999999999999999999999998874
No 80
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.70 E-value=5.8e-06 Score=74.44 Aligned_cols=297 Identities=16% Similarity=0.132 Sum_probs=179.1
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHH--HHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcC-
Q 043676 12 WSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVP--RFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHG- 88 (446)
Q Consensus 12 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~--~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~- 88 (446)
..+++..+..|..++..++... ....+.. ..++. .++..|........+..++.+|..+.. .++.|..+.+.+
T Consensus 135 ~~dd~~~ll~a~~l~~ll~~~~-~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~ 210 (480)
T 1ho8_A 135 KGDFQTVLISGFNVVSLLVQNG-LHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEK 210 (480)
T ss_dssp CSSHHHHHHHHHHHHHHHTSTT-TCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHH
T ss_pred cccchHHHHHHHHHHHHHhccC-CccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHccc
Confidence 3455555566665555554432 2221111 12233 455666664225667789999999998 889999887653
Q ss_pred -ChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCCh--HHHHHHhccccchhHH
Q 043676 89 -AVPIFVKLLSS-----------------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL--IPLLAELNEHAKLSML 148 (446)
Q Consensus 89 -~i~~L~~~L~~-----------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i--~~l~~~l~~~~~~~~~ 148 (446)
.++.++.+++. ....++..++.+++-++...+ ..+.+...+.. ..++..++....+.+.
T Consensus 211 ~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvv 289 (480)
T 1ho8_A 211 KFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVS 289 (480)
T ss_dssp HHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHH
T ss_pred chhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhH
Confidence 35555443321 135678899999999995544 55555555532 5666777677789999
Q ss_pred HHHHHHHHHhhcCCCCCCh------hhhhhhHHHHHHhhcC---CCHhHHHHHHHHHHHhccC---CcHHHHHHHHhCcH
Q 043676 149 RNATRTLSNFCRGKPEPPF------DQVRPALPALAQLVHS---NDEDVLTYACWSLSYLADG---TNDKIQAVIEAGVC 216 (446)
Q Consensus 149 ~~a~~~L~~l~~~~~~~~~------~~~~~~~~~l~~ll~~---~~~~v~~~~~~~l~~l~~~---~~~~~~~~~~~~~~ 216 (446)
+-++.+|.|+....+.... ....++++ ++..|.. .|+++.+..-..-..|... -...-+ ..
T Consensus 290 Rv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDe------Y~ 362 (480)
T 1ho8_A 290 RLCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDE------YV 362 (480)
T ss_dssp HHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHH------HH
T ss_pred HHHHHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHH------HH
Confidence 9999999999987532211 11133433 4444443 2666665543333222211 000000 00
Q ss_pred HHHH-HhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhcc---------CchHHHHHHHHHHHHHHhc
Q 043676 217 PRLV-ELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVH---------NHEEIIKKEISWIISNITA 286 (446)
Q Consensus 217 ~~l~-~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~---------~~~~~v~~~a~~~l~~l~~ 286 (446)
.-+. ..|.= +|.-+....| -.|.....+...+ ++..|.++|.+ +.++.+..-||.-++.++.
T Consensus 363 ~El~sG~L~W-SP~H~se~FW-~ENa~kf~e~~~~------llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr 434 (480)
T 1ho8_A 363 AELDSKLLCW-SPPHVDNGFW-SDNIDEFKKDNYK------IFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVE 434 (480)
T ss_dssp HHHHHTCCCC-CGGGGCHHHH-HHHSGGGSSGGGH------HHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCccc-CCCccchhHH-HHHHHHHHhcchH------HHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHH
Confidence 0011 11111 2222333333 3344443333332 56788888873 2267888889999999999
Q ss_pred CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhcc
Q 043676 287 GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATS 328 (446)
Q Consensus 287 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 328 (446)
..|..+..+-+.|+=..+++++.++|++||.+|+.|+..+..
T Consensus 435 ~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 435 LLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred HCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 888888877788999999999999999999999999988754
No 81
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.65 E-value=9.5e-06 Score=83.11 Aligned_cols=343 Identities=10% Similarity=0.039 Sum_probs=196.6
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCC------hh
Q 043676 6 ALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGT------SE 79 (446)
Q Consensus 6 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~------~~ 79 (446)
.+++.+.+++..++...+.++..++..+..... .++++.|++.+++++ +..+..++.++..++... ++
T Consensus 89 ~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~W-----p~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~~ 162 (960)
T 1wa5_C 89 EIVPLMISLPNNLQVQIGEAISSIADSDFPDRW-----PTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSDE 162 (960)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhCccch-----hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcChH
Confidence 455666666688899999999988875312111 267999999999887 788899999999988622 12
Q ss_pred hHHHH---HhcCChHHHHH-------hhCCCCH---------HHHHHHHHHHHHhhC-CChHH-HHHHHHcCChHHHHHH
Q 043676 80 NTNVV---IDHGAVPIFVK-------LLSSPSD---------DVREQAVWALGNVAG-DSPRC-RDLVLSQGALIPLLAE 138 (446)
Q Consensus 80 ~~~~~---~~~~~i~~L~~-------~L~~~~~---------~v~~~a~~~l~~l~~-~~~~~-~~~~~~~~~i~~l~~~ 138 (446)
.+..+ +. ...+.++. .+.++.. .+...++.+++++.. +.+.. .+.+. ..++.+.+.
T Consensus 163 ~~~~l~~~l~-~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~--~~~~~~~~~ 239 (960)
T 1wa5_C 163 LFLEIKLVLD-VFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQ--VGMGIFHKY 239 (960)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHH--HHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH--HHHHHHHHH
Confidence 22211 11 11232222 3444321 233346666666652 22321 11111 123444555
Q ss_pred hccc-----cc---------hhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-----CCCHhHHHHHHHHHHHh
Q 043676 139 LNEH-----AK---------LSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH-----SNDEDVLTYACWSLSYL 199 (446)
Q Consensus 139 l~~~-----~~---------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~-----~~~~~v~~~~~~~l~~l 199 (446)
+... .+ ..++..++.++..+....+..-......+++.....+. ..++.++..++..+..+
T Consensus 240 l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~ 319 (960)
T 1wa5_C 240 LSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAV 319 (960)
T ss_dssp HSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHH
T ss_pred HcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHH
Confidence 5221 01 24677788888877755421111123455555555554 34678899999999888
Q ss_pred ccCCcHHHH----HHHHhCcH-HHHHHhcCC-----------------------CCccchhHHHHHHHHhhcCCchhhHH
Q 043676 200 ADGTNDKIQ----AVIEAGVC-PRLVELLGH-----------------------PSPSVLTPALRTVGNIVTGDDFQTQC 251 (446)
Q Consensus 200 ~~~~~~~~~----~~~~~~~~-~~l~~ll~~-----------------------~~~~~~~~a~~~l~~l~~~~~~~~~~ 251 (446)
+........ .++. .++ +.++..+.- .....|..|..++..++...++..
T Consensus 320 ~~~~~~~~~~~~~~~l~-~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v-- 396 (960)
T 1wa5_C 320 TRIPKYFEIFNNESAMN-NITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV-- 396 (960)
T ss_dssp HTSHHHHGGGCSHHHHH-HHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH--
T ss_pred hCcHhHHHHHcCchHHH-HHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH--
Confidence 754221100 1111 222 222333221 112467788888888887554221
Q ss_pred HHhcCChHHHHHHhc------cCchHHHHHHHHHHHHHHhcCC--HH----------HHHHHHHcCChHHHHHHHhcC--
Q 043676 252 IINHGAVPYLLDMLV------HNHEEIIKKEISWIISNITAGN--RE----------QIQAVIDAGLIRPIVNLLQNA-- 311 (446)
Q Consensus 252 ~~~~~~~~~l~~~l~------~~~~~~v~~~a~~~l~~l~~~~--~~----------~~~~~~~~~~i~~L~~ll~~~-- 311 (446)
+ ..+++.+...+. +. ++..|+.|+.+++.++.+. .. ....++. ..++..+.+.
T Consensus 397 -~-~~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~----~~v~p~l~~~~~ 469 (960)
T 1wa5_C 397 -T-NIFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT----KEIAPDLTSNNI 469 (960)
T ss_dssp -H-HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH----HHTHHHHHCSSC
T ss_pred -H-HHHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHH----HHhHHHhcCCCC
Confidence 1 113444555554 44 6788999999999997531 10 1112211 1233344555
Q ss_pred -CcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHh
Q 043676 312 -EFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKV 372 (446)
Q Consensus 312 -~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~ 372 (446)
++.+|..|+|+++.++..-.++.... +++.+++.+.++++.|+..|+.+|.++++.
T Consensus 470 ~~p~vr~~a~~~lg~~~~~~~~~~l~~-----~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 470 PHIILRVDAIKYIYTFRNQLTKAQLIE-----LMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp SCHHHHHHHHHHHHHTGGGSCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred CCceehHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 78999999999999987654443332 577888888888899999999999998874
No 82
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.62 E-value=4e-06 Score=83.31 Aligned_cols=299 Identities=13% Similarity=0.156 Sum_probs=206.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCC---hhhH
Q 043676 5 PALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGT---SENT 81 (446)
Q Consensus 5 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~---~~~~ 81 (446)
..+++.+...+..-+..++..+..+..+..... ....+++..|.+.+.+.. .. +.|+.++..++... +..-
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~~~e 90 (986)
T 2iw3_A 17 EELFQKLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSPSVE 90 (986)
T ss_dssp HHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCTTTH
T ss_pred HHHHhhccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCCCcc
Confidence 345555665555666778888888766431111 111256777888877765 23 88899999998522 1221
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-CChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676 82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAG-DSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR 160 (446)
Q Consensus 82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 160 (446)
..++ +.++.++....+....+|..|-.++..++. .++... ...++.++..+......+.+..++.++..++.
T Consensus 91 ~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~ 163 (986)
T 2iw3_A 91 PYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVD 163 (986)
T ss_dssp HHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred cchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 2222 578999999988889999998888877774 333322 22578899999555578999999999999998
Q ss_pred CCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC-cHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHH
Q 043676 161 GKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGT-NDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVG 239 (446)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~ 239 (446)
..+.........++|.+...+.+..+++...+..++..+|.-- ..... ..+|.|+..+.+++. ...+...|+
T Consensus 164 ~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-----~~~~~~~~~~~~p~~--~~~~~~~l~ 236 (986)
T 2iw3_A 164 AAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-----RFIPSLIQCIADPTE--VPETVHLLG 236 (986)
T ss_dssp HSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-----GGHHHHHHHHHCTTH--HHHHHHHHT
T ss_pred HhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-----hhHHHHHHHhcChhh--hHHHHHHhh
Confidence 7654444456788999999999999999999999998887421 11222 778999999988743 334444444
Q ss_pred HhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHHHhc-CCcchH
Q 043676 240 NIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA--GNREQIQAVIDAGLIRPIVNLLQN-AEFDTK 316 (446)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~--~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~ 316 (446)
.-+.-..... ..+ +-.+|.|..-|... ...++..++-++.|+|. .++.....++. .++|.+.+.... .+|++|
T Consensus 237 ~~tfv~~v~~-~~l-~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~r 312 (986)
T 2iw3_A 237 ATTFVAEVTP-ATL-SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEAR 312 (986)
T ss_dssp TCCCCSCCCH-HHH-HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHHH
T ss_pred cCeeEeeecc-hhH-HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHHH
Confidence 4332221111 111 11467777778777 78889999999999997 67877777765 677877776664 489999
Q ss_pred HHHHHHHHHhc
Q 043676 317 KEAAWAISNAT 327 (446)
Q Consensus 317 ~~a~~aL~~l~ 327 (446)
..|..|+..+.
T Consensus 313 ~~~~~a~~~l~ 323 (986)
T 2iw3_A 313 EVTLRALKTLR 323 (986)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888888773
No 83
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.61 E-value=9.9e-09 Score=77.69 Aligned_cols=120 Identities=19% Similarity=0.196 Sum_probs=93.7
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676 45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD 124 (446)
Q Consensus 45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~ 124 (446)
..++.+..+|++++ +.+|..|+++|+.+.. ..++.|+.+|+++++.+|..++++|+++.. +.
T Consensus 12 ~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~~--- 73 (131)
T 1te4_A 12 SGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--ER--- 73 (131)
T ss_dssp ---------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--HH---
T ss_pred ccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--HH---
Confidence 56888999999988 8999999999987754 126889999999999999999999999862 11
Q ss_pred HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHh
Q 043676 125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYL 199 (446)
Q Consensus 125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l 199 (446)
.++.++..+ .++++.++..++++|..+.. ...++.|..+++++++.++..+..+|..+
T Consensus 74 ------a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 74 ------AVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ------HHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ------HHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 367888888 78899999999999999852 45789999999999999999999988653
No 84
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.61 E-value=1.4e-08 Score=76.87 Aligned_cols=120 Identities=16% Similarity=0.160 Sum_probs=91.6
Q ss_pred hCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHH
Q 043676 213 AGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQI 292 (446)
Q Consensus 213 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~ 292 (446)
...++.+..+|+++++.+|..|+++|+.+... .++.|...++++ ++.+|..|+++|+++. ++
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~-~~~vR~~A~~aL~~~~--~~--- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNE-DWRIRGAAAWIIGNFQ--DE--- 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCS-CHHHHHHHHHHHGGGC--SH---
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCC-CHHHHHHHHHHHHhcC--CH---
Confidence 36778899999999999999999988766431 258889999988 9999999999999984 22
Q ss_pred HHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHH
Q 043676 293 QAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLEN 368 (446)
Q Consensus 293 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~ 368 (446)
..++.|+.+++++++.+|..|+++|+++.. ++ .++.|..+++++++.++..+.++|.+
T Consensus 73 ------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~~---------a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 73 ------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG---ER---------VRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---HH---------HHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HH---------HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 257889999999999999999999999852 22 46778888999999999999988764
No 85
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.60 E-value=1.3e-05 Score=81.98 Aligned_cols=386 Identities=9% Similarity=0.046 Sum_probs=213.9
Q ss_pred HHHHHhhcC--CCHHHHHHHHHHHHHHhcCCC---------CCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 043676 5 PALVAGVWS--DDNSLQLEATTLSRKLLSFDR---------NPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINI 73 (446)
Q Consensus 5 ~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~---------~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l 73 (446)
..|.+.+.+ .+..+|..|+-.|.+.....- ++..+..++. .++..+.+++ ..+|..++.++..+
T Consensus 38 ~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~----~ll~~l~~~~-~~ir~~l~~~ia~i 112 (960)
T 1wa5_C 38 LTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKK----EIVPLMISLP-NNLQVQIGEAISSI 112 (960)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHH----HHHHHHHHSC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHH----HHHHHHHhCC-HHHHHHHHHHHHHH
Confidence 345666643 467889999999998765310 1112233333 3445555566 79999999999999
Q ss_pred cCC-ChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC------hHHHHHHH--HcCChHHHHHH------
Q 043676 74 ASG-TSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS------PRCRDLVL--SQGALIPLLAE------ 138 (446)
Q Consensus 74 ~~~-~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~------~~~~~~~~--~~~~i~~l~~~------ 138 (446)
+.. .++.. .+.++.|+..+.++++..+..++.++..++... ++.+..+. -....+.++.+
T Consensus 113 a~~d~p~~W-----p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~ 187 (960)
T 1wa5_C 113 ADSDFPDRW-----PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDE 187 (960)
T ss_dssp HHHHSTTTC-----TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCccch-----hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 862 12111 356888999998888888999999999998522 12222110 01123434333
Q ss_pred -hcccc-c-------hhHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCC------C---------HhHHHHHH
Q 043676 139 -LNEHA-K-------LSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHSN------D---------EDVLTYAC 193 (446)
Q Consensus 139 -l~~~~-~-------~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~------~---------~~v~~~~~ 193 (446)
+.... + ..+...++.+++.+.... +..........++.+..++... + ..++..++
T Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~ 267 (960)
T 1wa5_C 188 QITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQ 267 (960)
T ss_dssp HTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHH
Confidence 32211 1 133344666676665433 2211112345556666666421 1 25778888
Q ss_pred HHHHHhccCCcHHHHHHHHhCcHHHHHHhcC-----CCCccchhHHHHHHHHhhcCCchhhHHHHh-cCChHHH-----H
Q 043676 194 WSLSYLADGTNDKIQAVIEAGVCPRLVELLG-----HPSPSVLTPALRTVGNIVTGDDFQTQCIIN-HGAVPYL-----L 262 (446)
Q Consensus 194 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~-----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~l-----~ 262 (446)
.++..+....++....... .+++.....+. ..++.++..++..+..++.... .. .++. ...++.+ +
T Consensus 268 ~~l~~l~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~-~~-~~~~~~~~l~~li~~~i~ 344 (960)
T 1wa5_C 268 ELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPK-YF-EIFNNESAMNNITEQIIL 344 (960)
T ss_dssp HHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHH-HH-GGGCSHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHh-HH-HHHcCchHHHHHHHHHhH
Confidence 8888887655544432222 45555565553 2445677788888887765321 11 1111 0122222 2
Q ss_pred HHhcc----------------------CchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh------cCCcc
Q 043676 263 DMLVH----------------------NHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQ------NAEFD 314 (446)
Q Consensus 263 ~~l~~----------------------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~------~~~~~ 314 (446)
..+.- ......|..|..+|..++...++.. .. .+++.+...+. +.++.
T Consensus 345 ~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v---~~-~~l~~i~~~l~~~~~~~~~~w~ 420 (960)
T 1wa5_C 345 PNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV---TN-IFLAHMKGFVDQYMSDPSKNWK 420 (960)
T ss_dssp HHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH---HH-HHHHHHHHHHHHHHC----CHH
T ss_pred HhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH---HH-HHHHHHHHHHHHhccCcchhHH
Confidence 22210 1012467777888888776433221 11 13334444444 45678
Q ss_pred hHHHHHHHHHHhccCCC-HH----------HHHHHHHcCChHHHHhcccCC---CHHHHHHHHHHHHHHHHhhhhhhccc
Q 043676 315 TKKEAAWAISNATSGGT-QE----------QIKHLVREGCVKPLCDLLLCS---DPEIVTVCLIGLENILKVGEAERNMG 380 (446)
Q Consensus 315 v~~~a~~aL~~l~~~~~-~~----------~~~~l~~~~~i~~L~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~ 380 (446)
.|..|+.+++.++.++. .. ....+...-+++. +.++ ++-++..+++++.++...-..
T Consensus 421 ~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~----l~~~~~~~p~vr~~a~~~lg~~~~~~~~----- 491 (960)
T 1wa5_C 421 FKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPD----LTSNNIPHIILRVDAIKYIYTFRNQLTK----- 491 (960)
T ss_dssp HHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHH----HHCSSCSCHHHHHHHHHHHHHTGGGSCH-----
T ss_pred HHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHH----hcCCCCCCceehHHHHHHHHHHHhhCCH-----
Confidence 89999999999975421 00 1222221112332 3444 789999999999997654211
Q ss_pred CCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 043676 381 TTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGR 428 (446)
Q Consensus 381 ~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 428 (446)
..+ ...++.+...+.+++..|+..|..++.++.+..
T Consensus 492 ----------~~l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~ 527 (960)
T 1wa5_C 492 ----------AQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIR 527 (960)
T ss_dssp ----------HHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred ----------HHH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence 111 112445555556778999999999999988754
No 86
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.43 E-value=5.7e-05 Score=77.57 Aligned_cols=330 Identities=10% Similarity=-0.014 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHHHhcC-CCCCcHHHHHhcCCHHHHHHhhc----------------CCCChHHHHHHHHHHHHHcCCCh-
Q 043676 17 SLQLEATTLSRKLLSF-DRNPPIEKVIQSGVVPRFVEFLM----------------REDYPQLQYEAAWVLINIASGTS- 78 (446)
Q Consensus 17 ~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~~L~~ll~----------------~~~~~~~~~~a~~~L~~l~~~~~- 78 (446)
.++..++.++..+... . .+.. .....++.+.. +. .++ ++++..|+.++..+....+
T Consensus 204 ~~~~~al~~l~~~~~~~~-ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~l~~i~~~~~~ 277 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNIG-YTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADE-NELAESCLKTMVNIIIQPDC 277 (971)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHH-HHHHHHHHHHHHHHHHCSGG
T ss_pred hHHHHHHHHHHHHHhhCC-cCcc---ccccHHHHHHh-hhhhhccccccccccccCcCC-cHHHHHHHHHHHHHHcCccc
Confidence 6788888888876652 1 1211 23345666665 41 134 7899999999999987322
Q ss_pred hhHHHHHhcCChHHHHH-------hhCCCC---HHHHHHHHHHHHHhhCCChHH-H-----------HHHHHcCChHHHH
Q 043676 79 ENTNVVIDHGAVPIFVK-------LLSSPS---DDVREQAVWALGNVAGDSPRC-R-----------DLVLSQGALIPLL 136 (446)
Q Consensus 79 ~~~~~~~~~~~i~~L~~-------~L~~~~---~~v~~~a~~~l~~l~~~~~~~-~-----------~~~~~~~~i~~l~ 136 (446)
..+...+. ..++.++. .+.+.+ ++.....+..+..++...+.. . ..+. ..++.++
T Consensus 278 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~ll 354 (971)
T 2x1g_F 278 HNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVH--RIVQEIL 354 (971)
T ss_dssp GGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHH--HHHHHHH
T ss_pred cccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHH--HHHHHHH
Confidence 11111111 11222222 223344 366666777777666432221 1 1111 1234444
Q ss_pred HHhcc----ccchhHHHHHHHHHHHhhcCC--------CCCChh----hhhhhHHHHHHhhcCC-C--------------
Q 043676 137 AELNE----HAKLSMLRNATRTLSNFCRGK--------PEPPFD----QVRPALPALAQLVHSN-D-------------- 185 (446)
Q Consensus 137 ~~l~~----~~~~~~~~~a~~~L~~l~~~~--------~~~~~~----~~~~~~~~l~~ll~~~-~-------------- 185 (446)
..... ..+..+...+++.+..+++.. ...... ....+++.++..+..+ +
T Consensus 355 ~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f 434 (971)
T 2x1g_F 355 HCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECF 434 (971)
T ss_dssp HHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHH
T ss_pred HHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHH
Confidence 43311 246788889999888876521 011111 1233444444444321 1
Q ss_pred HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-----CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHH
Q 043676 186 EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-----PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPY 260 (446)
Q Consensus 186 ~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 260 (446)
...|..+..++..++...++..-. -+++.+...+.. .++..++.++.+++.++.+...... ..++.
T Consensus 435 ~~~R~~~~~~l~~~~~~~~~~~l~----~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~ 505 (971)
T 2x1g_F 435 RCYRQDISDTFMYCYDVLNDYILE----ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIPR 505 (971)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHHHH----HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHHH
Confidence 135566666776666544322111 112222223322 6788899999999999876553221 22333
Q ss_pred HHHHh---c--cCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHH
Q 043676 261 LLDML---V--HNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQI 335 (446)
Q Consensus 261 l~~~l---~--~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 335 (446)
++.++ . +. ++.+|..++|+++.++..-......+- .+++.++..+ + +.++..|+.++.+++........
T Consensus 506 l~~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~ 579 (971)
T 2x1g_F 506 LMRVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYIP--PAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLK 579 (971)
T ss_dssp HHHHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CHH--HHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333 2 34 788999999999999751001111121 3566677666 2 88999999999999976443333
Q ss_pred HHHHHcCChHHHHhcccC--CCHHHHHHHHHHHHHHHHh
Q 043676 336 KHLVREGCVKPLCDLLLC--SDPEIVTVCLIGLENILKV 372 (446)
Q Consensus 336 ~~l~~~~~i~~L~~ll~~--~~~~~~~~~~~~l~~l~~~ 372 (446)
.++- .++..+.+++.. .+.+.+..+++++..++..
T Consensus 580 p~~~--~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 580 PYAD--PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHH--HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred ccHH--HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 3322 256667777776 3578888899999998875
No 87
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.39 E-value=8.7e-05 Score=76.25 Aligned_cols=393 Identities=12% Similarity=0.072 Sum_probs=202.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHh-------hcCCCC--hHHHHHHHHHHHHHcCCChhhH---
Q 043676 14 DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEF-------LMREDY--PQLQYEAAWVLINIASGTSENT--- 81 (446)
Q Consensus 14 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~l-------l~~~~~--~~~~~~a~~~L~~l~~~~~~~~--- 81 (446)
+++..+..|+.++..+............+. .+++.++.+ +...+. ++.....++.+..++.......
T Consensus 256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 334 (971)
T 2x1g_F 256 DENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG 334 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999887531111111221 223443332 233331 2666677777777764222211
Q ss_pred ---------HHHHhcCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCC---------ChHHHHHHHH--cCChHHHH
Q 043676 82 ---------NVVIDHGAVPIFVKLLSS-----PSDDVREQAVWALGNVAGD---------SPRCRDLVLS--QGALIPLL 136 (446)
Q Consensus 82 ---------~~~~~~~~i~~L~~~L~~-----~~~~v~~~a~~~l~~l~~~---------~~~~~~~~~~--~~~i~~l~ 136 (446)
..+ ...++.++.+... .++++...+++.+..++.. .+........ ...++.++
T Consensus 335 ~~~~~~~~~~~l--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 412 (971)
T 2x1g_F 335 ITSADPELSILV--HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV 412 (971)
T ss_dssp HHTCCHHHHHHH--HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred hccCcccccHHH--HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 111 1345566665533 4678899999998887641 1111111111 12344444
Q ss_pred HHhccccc--------------hhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcC-----CCHhHHHHHHHHHH
Q 043676 137 AELNEHAK--------------LSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHS-----NDEDVLTYACWSLS 197 (446)
Q Consensus 137 ~~l~~~~~--------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~-----~~~~v~~~~~~~l~ 197 (446)
..+....+ ...+..+..++..++...+ ......+++.+...+.. .+...++.++.+++
T Consensus 413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~ 489 (971)
T 2x1g_F 413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQ 489 (971)
T ss_dssp HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence 44421111 1355666777777765432 22334444555555543 57889999999999
Q ss_pred HhccCCcHHHHHHHHhCcHHHHHHhcC-CCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHH
Q 043676 198 YLADGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKE 276 (446)
Q Consensus 198 ~l~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~ 276 (446)
.++..........+. .+++.+..+.. +.++.++..++++++.++..-....+.+ ..+++.++..+ + +.++..
T Consensus 490 ~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l-~---~~v~~~ 562 (971)
T 2x1g_F 490 SVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGL-N---SSMSAQ 562 (971)
T ss_dssp HTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHH-H---SSCHHH
T ss_pred HHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHh-C---hHHHHH
Confidence 998765533221111 23332322221 3477899999999999885322111111 12455566666 2 478999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--CcchHHHHHHHHHHhccCCC-HHHHHHHHHcCChHHHH----h
Q 043676 277 ISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA--EFDTKKEAAWAISNATSGGT-QEQIKHLVREGCVKPLC----D 349 (446)
Q Consensus 277 a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~i~~L~----~ 349 (446)
|++++.+++...........+ .++..+..++..+ +.+.+..+..+++.++.... .+....+.. +++.+. .
T Consensus 563 A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~--ll~~l~~~l~~ 639 (971)
T 2x1g_F 563 ATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDI--IVSPCFEELQA 639 (971)
T ss_dssp HHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH--HHHHHHHHHHH
Confidence 999999998755544444433 5777777888774 56888999999999876432 233333222 333333 3
Q ss_pred cccCC--CHHHHH---HHHHHHHHHHHhhhhhhcccCCCC--ccchHHHHHHHhChHHHHHHhhcC--CCHHHHHHHHHH
Q 043676 350 LLLCS--DPEIVT---VCLIGLENILKVGEAERNMGTTIG--DVNQYAQFVEEAGGLEKIENLQSH--DNNEIHEKSVKI 420 (446)
Q Consensus 350 ll~~~--~~~~~~---~~~~~l~~l~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~l~~l~~~--~~~~v~~~a~~~ 420 (446)
+++.. +++-+. .+++.|..++..-......... + ...++...+ ...++.+..+... .+.++.+.+..+
T Consensus 640 ~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~-~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~v~e~~~~~ 716 (971)
T 2x1g_F 640 ICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQAT-DQPIVQPVLLVM--QRTMPIFKRIAEMWVEEIDVLEAACSA 716 (971)
T ss_dssp HHTC---CHHHHHHHHHHHHHHHHHHHHHTC--------------CCHHHH--HTTHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccc-cccCCCchHHHH--HHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 33333 332233 3444455544432211000000 0 001112222 2345555555432 366888888888
Q ss_pred HHHhc
Q 043676 421 FKTYW 425 (446)
Q Consensus 421 l~~~~ 425 (446)
+.+..
T Consensus 717 ~~~~~ 721 (971)
T 2x1g_F 717 MKHAI 721 (971)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87743
No 88
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.38 E-value=6.8e-06 Score=70.24 Aligned_cols=187 Identities=12% Similarity=0.088 Sum_probs=140.7
Q ss_pred HHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHH-H
Q 043676 219 LVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVI-D 297 (446)
Q Consensus 219 l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~ 297 (446)
++..|.+.+.+.+..++.-|..+...+......++..+++..|+.+..+. +...+..++.++.++... .....-++ .
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs~ 200 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHHHHHHC
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-cccccchhCC
Confidence 33444456677788899999996666788899999999999999999998 999999999999999764 45555555 3
Q ss_pred cCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHH-------H-c--CChHHHHhccc---CCCHHHHHHHHH
Q 043676 298 AGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLV-------R-E--GCVKPLCDLLL---CSDPEIVTVCLI 364 (446)
Q Consensus 298 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~-------~-~--~~i~~L~~ll~---~~~~~~~~~~~~ 364 (446)
...+..+..++.+.+..+.+.|+..|..++...+ .....+. . . ..++.|+.+|+ ..|.+++.++..
T Consensus 201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se-~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE-NNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc-ccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 4578888888888888999999999999977642 1111111 1 1 23778899997 678999999999
Q ss_pred HHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCC--CHHHHH
Q 043676 365 GLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHD--NNEIHE 415 (446)
Q Consensus 365 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~--~~~v~~ 415 (446)
.|..++...+.... ...+...+.+.|.-..+.+.+... ++++++
T Consensus 280 LIN~lL~~apd~d~-------~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 280 LINKTLAALPDQDS-------FYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHHHHCSSHHH-------HHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHHHHHhcCCChhH-------HHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 99999887664331 123677788888777788877665 566543
No 89
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.35 E-value=5.2e-05 Score=75.50 Aligned_cols=299 Identities=15% Similarity=0.156 Sum_probs=203.3
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC---hHHHHHH
Q 043676 50 FVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS---PRCRDLV 126 (446)
Q Consensus 50 L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~---~~~~~~~ 126 (446)
+++-+...+ ..-+..++..+.++........ .+..+++..+.+.+.+.... +.|+.++..+|... +.....+
T Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~ 93 (986)
T 2iw3_A 19 LFQKLSVAT-ADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI 93 (986)
T ss_dssp HHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred HHhhccccc-hhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch
Confidence 444455443 3335566667777655221111 11125677888888764333 99999999999433 2222233
Q ss_pred HHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC-CHhHHHHHHHHHHHhccCCcH
Q 043676 127 LSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSN-DEDVLTYACWSLSYLADGTND 205 (446)
Q Consensus 127 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~~~~~l~~l~~~~~~ 205 (446)
. +.++.++..+ .+....++..|-.+...+...-+. .....++|.|...+.+. .+..+..++.++..++...+.
T Consensus 94 ~--~~~~~~~~~~-~dk~~~v~~aa~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~ 167 (986)
T 2iw3_A 94 V--QLVPAICTNA-GNKDKEIQSVASETLISIVNAVNP---VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD 167 (986)
T ss_dssp H--TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSCG---GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred H--HHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH
Confidence 3 4678888887 566778888888888877766422 22377889999998766 699999999999999976665
Q ss_pred HHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcC--CchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHH
Q 043676 206 KIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG--DDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISN 283 (446)
Q Consensus 206 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~ 283 (446)
... ..-.+++|.+-..+-+..+++...|..++..+|.. |.+. ...+|.|++.+.++ +. ..+++..|+.
T Consensus 168 ~~~-~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p-~~--~~~~~~~l~~ 237 (986)
T 2iw3_A 168 QVA-LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADP-TE--VPETVHLLGA 237 (986)
T ss_dssp HHH-HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCT-TH--HHHHHHHHTT
T ss_pred HHH-HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcCh-hh--hHHHHHHhhc
Confidence 443 33348899999999999999999999999988852 2222 23689999999877 33 3344444443
Q ss_pred Hhc---CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccC-CCHHHHHHHHHcCChHHHHhcccC-CCHHH
Q 043676 284 ITA---GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSG-GTQEQIKHLVREGCVKPLCDLLLC-SDPEI 358 (446)
Q Consensus 284 l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~ 358 (446)
-+. -+..... =++|.|.+-|......++++++-.+.||+.- .++.....|+. ..+|.+....+. .+|++
T Consensus 238 ~tfv~~v~~~~l~-----~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~ 311 (986)
T 2iw3_A 238 TTFVAEVTPATLS-----IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEA 311 (986)
T ss_dssp CCCCSCCCHHHHH-----HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHH
T ss_pred CeeEeeecchhHH-----HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHH
Confidence 332 1222111 1567788888888889999999999999874 35555555443 477778776654 68999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 043676 359 VTVCLIGLENILKVGEA 375 (446)
Q Consensus 359 ~~~~~~~l~~l~~~~~~ 375 (446)
|..+-.++..+.+.+..
T Consensus 312 r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 312 REVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 99999999998877554
No 90
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.32 E-value=0.00033 Score=71.38 Aligned_cols=341 Identities=10% Similarity=0.084 Sum_probs=184.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHH-HhhcCCCChHHHHHHHHHHHHHcCCC---h--hhHHHHHh
Q 043676 13 SDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFV-EFLMREDYPQLQYEAAWVLINIASGT---S--ENTNVVID 86 (446)
Q Consensus 13 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~-~ll~~~~~~~~~~~a~~~L~~l~~~~---~--~~~~~~~~ 86 (446)
+.++.+...++.++..+.+- -+...+.+.+.++.+. .++. + ++++..|+.||..+.... + +....+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~ 279 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence 45677788888999887763 3466788889999999 8875 3 789999999999998722 2 12211110
Q ss_pred --cCChHHH--------------HHhhCCCCHHHHHHHHHHHHHhhC-------CChHHHHHHHHcCChHHHHHHhcccc
Q 043676 87 --HGAVPIF--------------VKLLSSPSDDVREQAVWALGNVAG-------DSPRCRDLVLSQGALIPLLAELNEHA 143 (446)
Q Consensus 87 --~~~i~~L--------------~~~L~~~~~~v~~~a~~~l~~l~~-------~~~~~~~~~~~~~~i~~l~~~l~~~~ 143 (446)
.+.+..+ ...-...+.+.....+.++..+.. ..+..+..+. .++..++..- ..+
T Consensus 280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~ 356 (1023)
T 4hat_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE 356 (1023)
T ss_dssp HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence 0111111 111122345555555666554442 1122122211 1122333332 445
Q ss_pred chhHHHHHHHHHHHhhcCCCC--CChhhhhhhH----HHHHHhhcCCC--------------------Hh-HHHHHH-HH
Q 043676 144 KLSMLRNATRTLSNFCRGKPE--PPFDQVRPAL----PALAQLVHSND--------------------ED-VLTYAC-WS 195 (446)
Q Consensus 144 ~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~----~~l~~ll~~~~--------------------~~-v~~~~~-~~ 195 (446)
+.++...++..-..++.+-.. .........+ +.++.-+.-+. ++ -..... .+
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 677767776665555543211 1222233333 33333333211 00 111011 22
Q ss_pred HHHhccCCc-HHHHHHHHhCcHHHHHHhcCC--CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhcc-----
Q 043676 196 LSYLADGTN-DKIQAVIEAGVCPRLVELLGH--PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVH----- 267 (446)
Q Consensus 196 l~~l~~~~~-~~~~~~~~~~~~~~l~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~----- 267 (446)
|..++.-.. +... -+++.+...+.. .++..++.++++++.++.+..+....-.-..+++.|+.++.+
T Consensus 437 L~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d 511 (1023)
T 4hat_C 437 LVYLTHLNVIDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD 511 (1023)
T ss_dssp HHHHHHHCHHHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHhccCHHHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence 222221111 1111 123334444443 578899999999999998765432222223467778887763
Q ss_pred CchHHHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHH--------
Q 043676 268 NHEEIIKKEISWIISNITA---GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIK-------- 336 (446)
Q Consensus 268 ~~~~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~-------- 336 (446)
+ ...++..++|+++.++. .+++... .++..|++.+.+.++.++..|++++.+++..+......
T Consensus 512 ~-k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p 585 (1023)
T 4hat_C 512 N-KAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEP 585 (1023)
T ss_dssp H-HHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSC
T ss_pred c-hHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCch
Confidence 3 45566788899998865 2333222 35556677776677889999999999998753322210
Q ss_pred HHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676 337 HLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 337 ~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 375 (446)
++- .++..+......-+++-+..+.+++..+++..+.
T Consensus 586 ~~~--~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~ 622 (1023)
T 4hat_C 586 FIQ--TIIRDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1023)
T ss_dssp HHH--HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS
T ss_pred hHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence 111 1233333444445666667788888888876543
No 91
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.27 E-value=3.8e-05 Score=65.69 Aligned_cols=187 Identities=13% Similarity=0.116 Sum_probs=136.2
Q ss_pred HHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH
Q 043676 174 LPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCII 253 (446)
Q Consensus 174 ~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 253 (446)
...++.-|.+.+.+.+..++.-|..+...+......++..+++..|+......+...+..++.++.++..+....-..+-
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence 44566667778888899999999986666677888899999999999999999999999999999999986443322222
Q ss_pred hcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHH--------c--CChHHHHHHHh---cCCcchHHHHH
Q 043676 254 NHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVID--------A--GLIRPIVNLLQ---NAEFDTKKEAA 320 (446)
Q Consensus 254 ~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--------~--~~i~~L~~ll~---~~~~~v~~~a~ 320 (446)
...++..+..++.+. ...+.+.|+..|-.++..++.....+.+ . ..++.|+.+++ +.+.+++..|.
T Consensus 200 ~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 556888999999876 8899999999999988644322222221 1 24889999997 67889999999
Q ss_pred HHHHHhccCCC-HH----HHHHHHHcCChHHHHhcccCC--CHHHHHH
Q 043676 321 WAISNATSGGT-QE----QIKHLVREGCVKPLCDLLLCS--DPEIVTV 361 (446)
Q Consensus 321 ~aL~~l~~~~~-~~----~~~~l~~~~~i~~L~~ll~~~--~~~~~~~ 361 (446)
..+..+..+.. .+ ....+.+.|.-..+...++.. +++++..
T Consensus 279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 88877766533 33 233334455445566667654 6666554
No 92
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.22 E-value=0.00055 Score=70.26 Aligned_cols=348 Identities=11% Similarity=0.063 Sum_probs=182.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHh------cCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCCh
Q 043676 5 PALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQ------SGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTS 78 (446)
Q Consensus 5 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~------~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 78 (446)
+.+.+.+ +++..+..|+.++..+......+.....+. -+..+.+...+...+ .+.....++.+..++...+
T Consensus 244 ~~l~~~l--~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d-~~~~~~~~~l~~~~~~~~~ 320 (963)
T 2x19_B 244 QAAFAAL--QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD-METSHGICRIAVALGENHS 320 (963)
T ss_dssp HHHHHHT--TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh--CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHhH
Confidence 3344444 356788899999999887531111111111 111222222334445 4555666677766654111
Q ss_pred hh-------HHHHHhcCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCC--------hHHHHHHHH--cCChHHHH
Q 043676 79 EN-------TNVVIDHGAVPIFVKLLSS-----PSDDVREQAVWALGNVAGDS--------PRCRDLVLS--QGALIPLL 136 (446)
Q Consensus 79 ~~-------~~~~~~~~~i~~L~~~L~~-----~~~~v~~~a~~~l~~l~~~~--------~~~~~~~~~--~~~i~~l~ 136 (446)
.. ...+ ...++.++.+... .++.+...++..+..++... +.....+.. ...++.++
T Consensus 321 ~~l~~~~~~~~~~--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll 398 (963)
T 2x19_B 321 RALLDQVEHWQSF--LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLL 398 (963)
T ss_dssp HHHHHCGGGHHHH--HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCccchHHH--HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 11 1111 1345666666554 34566777777777766411 111111110 01233444
Q ss_pred HHhccccc--------------hhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhh----cCCCHhHHHHHHHHHHH
Q 043676 137 AELNEHAK--------------LSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLV----HSNDEDVLTYACWSLSY 198 (446)
Q Consensus 137 ~~l~~~~~--------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll----~~~~~~v~~~~~~~l~~ 198 (446)
..+....+ .+.+..+..+|..++...+ ......+++.+...+ .+.++..++.++.+++.
T Consensus 399 ~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~ 475 (963)
T 2x19_B 399 HKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG---AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQS 475 (963)
T ss_dssp HHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHH
T ss_pred HHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 44421111 0224445555655553221 112233444455555 45678899999999999
Q ss_pred hccCCcHHHHHHHHhCcHHHHHHhc---CCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHH
Q 043676 199 LADGTNDKIQAVIEAGVCPRLVELL---GHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKK 275 (446)
Q Consensus 199 l~~~~~~~~~~~~~~~~~~~l~~ll---~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~ 275 (446)
++........ ..++.++..+ ..+++.++..++++++.++..-.... ..+ ..+++.++..+.+ +.++.
T Consensus 476 i~~~~~~~~~-----~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l~~~l~~---~~V~~ 545 (963)
T 2x19_B 476 IAETIDVNYS-----DVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLVLHALGN---PELSV 545 (963)
T ss_dssp HTTSCCSSCC-----SHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHHHHHTTC---GGGHH
T ss_pred HHhhcCchhh-----HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHHHHHhCC---chHHH
Confidence 9976442111 2233333332 33567799999999999986322222 222 3688888888854 58999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--CcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhccc-
Q 043676 276 EISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA--EFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL- 352 (446)
Q Consensus 276 ~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~- 352 (446)
.|++++.+++...........+ .++..+..++... +...+..+..+++.++....++......+ .+++.+...+.
T Consensus 546 ~A~~al~~l~~~~~~~l~p~~~-~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~-~l~~~l~~~l~~ 623 (963)
T 2x19_B 546 SSVSTLKKICRECKYDLPPYAA-NIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLH-SLISPYIQQLEK 623 (963)
T ss_dssp HHHHHHHHHHHHTGGGCTTTHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHHHH
Confidence 9999999998633222111111 3455555666653 46788999999999986544333333222 14444444332
Q ss_pred ---C-CCHHHHH---HHHHHHHHHHHh
Q 043676 353 ---C-SDPEIVT---VCLIGLENILKV 372 (446)
Q Consensus 353 ---~-~~~~~~~---~~~~~l~~l~~~ 372 (446)
. .+++.+. ..+++|..+++.
T Consensus 624 ~~~~~~~~~~~~~~~~~l~~l~~i~~~ 650 (963)
T 2x19_B 624 LAEEIPNPSNKLAIVHILGLLSNLFTT 650 (963)
T ss_dssp HHSSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 2444444 445555555554
No 93
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.18 E-value=0.0012 Score=68.36 Aligned_cols=345 Identities=9% Similarity=0.081 Sum_probs=181.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCC--hh---hHHHHHh--
Q 043676 14 DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGT--SE---NTNVVID-- 86 (446)
Q Consensus 14 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~--~~---~~~~~~~-- 86 (446)
+++.++..++.++..+...- ....+....+++.+.+.+.. + ++++..|+.+|..+.... +. ....+..
T Consensus 207 ~~~~~~~~aL~~l~~~l~wi---~~~~~~~~~ll~~l~~~~l~-~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~ 281 (1049)
T 3m1i_C 207 SSSSLIVATLESLLRYLHWI---PYRYIYETNILELLSTKFMT-S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFF 281 (1049)
T ss_dssp CCHHHHHHHHHHHHHHTTTS---CTHHHHSSSHHHHHHTHHHH-S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhC---CHHHHhhhhHHHHHHHHhCC-C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Confidence 45778888999998876642 23445667778877743332 5 799999999999998632 21 1111110
Q ss_pred cCChHHHHH-hh-------------CCCCHHHHHHHHHHHHHhhCC-------ChHHHHHHHHcCChHHHHHHhccccch
Q 043676 87 HGAVPIFVK-LL-------------SSPSDDVREQAVWALGNVAGD-------SPRCRDLVLSQGALIPLLAELNEHAKL 145 (446)
Q Consensus 87 ~~~i~~L~~-~L-------------~~~~~~v~~~a~~~l~~l~~~-------~~~~~~~~~~~~~i~~l~~~l~~~~~~ 145 (446)
.+.+..+.. ++ .+.+.+.....+..+..+... .+..+..+ ...++.++... ..++.
T Consensus 282 ~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d~ 358 (1049)
T 3m1i_C 282 QNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEER 358 (1049)
T ss_dssp HHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSCH
T ss_pred HHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCcH
Confidence 122222221 11 123344444555555443311 11111111 11344455544 45577
Q ss_pred hHHHHHHHHHHHhhc----CCCCCC--hhhhhhhHHHHHHhhcCC-------------------CH---hHHHHHHHHHH
Q 043676 146 SMLRNATRTLSNFCR----GKPEPP--FDQVRPALPALAQLVHSN-------------------DE---DVLTYACWSLS 197 (446)
Q Consensus 146 ~~~~~a~~~L~~l~~----~~~~~~--~~~~~~~~~~l~~ll~~~-------------------~~---~v~~~~~~~l~ 197 (446)
++...++..+..++. ...... ......+++.++..+..+ +. ..+..+..+|.
T Consensus 359 ~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~ 438 (1049)
T 3m1i_C 359 ELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV 438 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHH
Confidence 788888877777776 321111 112234444444444211 10 22334555566
Q ss_pred HhccCCcHHHHHHHHhCcHHHHHHhcC--CCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhcc----CchH
Q 043676 198 YLADGTNDKIQAVIEAGVCPRLVELLG--HPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVH----NHEE 271 (446)
Q Consensus 198 ~l~~~~~~~~~~~~~~~~~~~l~~ll~--~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~ 271 (446)
.++...+...-. -+.+.+-..+. ..++..++.++++++.++.........-.-..+++.+..+... ...+
T Consensus 439 ~l~~~~~~~~l~----~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~ 514 (1049)
T 3m1i_C 439 YLTHLNVIDTEE----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKA 514 (1049)
T ss_dssp HHHHHCHHHHHH----HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHH
T ss_pred HHHccCHHHHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchH
Confidence 555333321111 12334444444 3577889999999999986544322111112244444443321 1145
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHH--------HHHHHcCC
Q 043676 272 IIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQI--------KHLVREGC 343 (446)
Q Consensus 272 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~--------~~l~~~~~ 343 (446)
.++..++|+++.++.--......+. .+++.++..+.+.++.++..|+.++.+++........ .++ ..+
T Consensus 515 ~v~~~~~~~lgry~~~~~~~~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~--~~i 590 (1049)
T 3m1i_C 515 VVASDIMYVVGQYPRFLKAHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI--QTI 590 (1049)
T ss_dssp HHHHHHHHHHHHCHHHHHHCHHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH--HHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH--HHH
Confidence 5666789999988641111111222 3677788888888899999999999999875332221 111 113
Q ss_pred hHHHHhcccCCCHHHHHHHHHHHHHHHHhhh
Q 043676 344 VKPLCDLLLCSDPEIVTVCLIGLENILKVGE 374 (446)
Q Consensus 344 i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~ 374 (446)
+..+..++...+.+-.....+++..++...+
T Consensus 591 l~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 591 IRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 3334444555455545666677777765443
No 94
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.16 E-value=0.002 Score=66.72 Aligned_cols=354 Identities=10% Similarity=0.093 Sum_probs=189.2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcC----CCC--Cc-H-----HHHHh--cCCHHHHHHhhcCCCChHHHHHHHHH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSF----DRN--PP-I-----EKVIQ--SGVVPRFVEFLMREDYPQLQYEAAWV 69 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~----~~~--~~-~-----~~~~~--~~~~~~L~~ll~~~~~~~~~~~a~~~ 69 (446)
++.+++.++ .++..+..++..|..+... ... .. + ..+.. ..+++.+...+.+...+.++..++.+
T Consensus 140 l~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~ 218 (1049)
T 3m1i_C 140 IPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLES 218 (1049)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 567777776 4555555556666554421 100 00 0 11211 12334445555544437899999999
Q ss_pred HHHHcCCChhhHHHHHhcCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCC--hH---HHHHHHHcCChHHHHHHh----
Q 043676 70 LINIASGTSENTNVVIDHGAVPIFVK-LLSSPSDDVREQAVWALGNVAGDS--PR---CRDLVLSQGALIPLLAEL---- 139 (446)
Q Consensus 70 L~~l~~~~~~~~~~~~~~~~i~~L~~-~L~~~~~~v~~~a~~~l~~l~~~~--~~---~~~~~~~~~~i~~l~~~l---- 139 (446)
+.+...--+ ...+.+...++.+.. ++ .+++++..|+.++..+.... +. ....+.. .++.++..+
T Consensus 219 l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~--l~~~~l~~l~~si 292 (1049)
T 3m1i_C 219 LLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL--FFQNTLQQIATSV 292 (1049)
T ss_dssp HHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHH--HHHHHHHHHHHHT
T ss_pred HHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHH--HHHHHHHHHHHhh
Confidence 988776222 233455666776663 44 37899999999999998542 21 1111111 111122211
Q ss_pred -------------ccccchhHHHHHHHHHHHhhcCC------CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhc
Q 043676 140 -------------NEHAKLSMLRNATRTLSNFCRGK------PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLA 200 (446)
Q Consensus 140 -------------~~~~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~ 200 (446)
..+.+.+.....+..+..+.... +.........+++.++.+...++.++...++..+..++
T Consensus 293 ~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~ 372 (1049)
T 3m1i_C 293 MPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLV 372 (1049)
T ss_dssp CCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 01223444445555554333211 11011223456777777777778888888888877776
Q ss_pred c----C--CcHHHHHHHHhCcHHHHHHhcCCCCc----------------------cchhHHHHHHHHhhcCCchhhHHH
Q 043676 201 D----G--TNDKIQAVIEAGVCPRLVELLGHPSP----------------------SVLTPALRTVGNIVTGDDFQTQCI 252 (446)
Q Consensus 201 ~----~--~~~~~~~~~~~~~~~~l~~ll~~~~~----------------------~~~~~a~~~l~~l~~~~~~~~~~~ 252 (446)
. . .......++. .+++.++..+..++. ..+..+..+|..++...+.....
T Consensus 373 ~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~- 450 (1049)
T 3m1i_C 373 ADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEE- 450 (1049)
T ss_dssp HHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHH-
T ss_pred HHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHH-
Confidence 5 2 1112222222 455666666543211 11224555666665433221111
Q ss_pred HhcCChHHHHHHhcc-CchHHHHHHHHHHHHHHhcCCHHH-HHHHHHcCChHHHHHHHhc-----CCcchHHHHHHHHHH
Q 043676 253 INHGAVPYLLDMLVH-NHEEIIKKEISWIISNITAGNREQ-IQAVIDAGLIRPIVNLLQN-----AEFDTKKEAAWAISN 325 (446)
Q Consensus 253 ~~~~~~~~l~~~l~~-~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~aL~~ 325 (446)
-+.+.+-..+.. ..++..++.++++++.++.+.... ...+.. .+++.+..+... ..+.++..++++++.
T Consensus 451 ---~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~-~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgr 526 (1049)
T 3m1i_C 451 ---IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQ 526 (1049)
T ss_dssp ---HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH-HHHHHHHHHHhhhccccchHHHHHHHHHHHHH
Confidence 123444444542 227788999999999997632221 111111 244555544332 234455568899987
Q ss_pred hccC--CCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676 326 ATSG--GTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 326 l~~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 375 (446)
++.. ..++.... +++.+.+.+.++++.++..|+.++.++++.+..
T Consensus 527 y~~~~~~~~~~l~~-----vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~ 573 (1049)
T 3m1i_C 527 YPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1049)
T ss_dssp CHHHHHHCHHHHHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHhHHHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7542 12222222 577788888888999999999999999986554
No 95
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.11 E-value=0.001 Score=67.86 Aligned_cols=315 Identities=10% Similarity=0.094 Sum_probs=177.4
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCC---h-
Q 043676 46 VVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFV-KLLSSPSDDVREQAVWALGNVAGDS---P- 120 (446)
Q Consensus 46 ~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~-~~L~~~~~~v~~~a~~~l~~l~~~~---~- 120 (446)
+++.+...+.++..+++...++.++.....- -....+.+.+.++.+. .++. +++++..|+.+|..+.... +
T Consensus 195 I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~W--I~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~ 270 (1023)
T 4hat_C 195 IFKLCFQVLEQGASSSLIVATLESLLRYLHW--IPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDN 270 (1023)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTT--SCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh--CCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCch
Confidence 4445555565544478888899999998872 2245667788899998 8884 6789999999999998622 2
Q ss_pred -HHHHHHHH--cCChHHH-----------HHHh--ccccchhHHHHHHHHHHHhhcCCCCC-----C-hhhhhhhHHHHH
Q 043676 121 -RCRDLVLS--QGALIPL-----------LAEL--NEHAKLSMLRNATRTLSNFCRGKPEP-----P-FDQVRPALPALA 178 (446)
Q Consensus 121 -~~~~~~~~--~~~i~~l-----------~~~l--~~~~~~~~~~~a~~~L~~l~~~~~~~-----~-~~~~~~~~~~l~ 178 (446)
...+.+.. .+.+..+ -..+ ....+.+.....+..+..+....... . ......++..++
T Consensus 271 ~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll 350 (1023)
T 4hat_C 271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI 350 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Confidence 12211111 0011111 0111 12235667777777776665543110 0 011122233555
Q ss_pred HhhcCCCHhHHHHHHHHHHHhccC---C---cHHHHHHHHhCcHHHHHHhcCCCCc------c---c---------hhHH
Q 043676 179 QLVHSNDEDVLTYACWSLSYLADG---T---NDKIQAVIEAGVCPRLVELLGHPSP------S---V---------LTPA 234 (446)
Q Consensus 179 ~ll~~~~~~v~~~~~~~l~~l~~~---~---~~~~~~~~~~~~~~~l~~ll~~~~~------~---~---------~~~a 234 (446)
.+...++.++...++..-..++.. . ......++. .+++.++.-+..++. + . ....
T Consensus 351 ~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~-~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~ 429 (1023)
T 4hat_C 351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL 429 (1023)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHH-HHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHH
T ss_pred HhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH-HHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHH
Confidence 555567888877777766555531 0 111111222 456666666665430 0 0 0011
Q ss_pred H----HHHHHhhcCCchhhHHHHhcCChHHHHHHhccC-chHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHHH
Q 043676 235 L----RTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHN-HEEIIKKEISWIISNITAGN-REQIQAVIDAGLIRPIVNLL 308 (446)
Q Consensus 235 ~----~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~L~~ll 308 (446)
. .+|..++.-...... .-+++.+.+.+.++ .++..++.++|+++.++.+. ++....++. .+++.|+.++
T Consensus 430 f~~~Rd~L~~l~~l~~~~~~----~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~-~vi~~Ll~l~ 504 (1023)
T 4hat_C 430 YKSEREVLVYLTHLNVIDTE----EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLC 504 (1023)
T ss_dssp HHHHHHHHHHHHHHCHHHHH----HHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHH----HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHH-HHHHHHHHhh
Confidence 1 222222211111110 01233444444432 27899999999999998753 332223332 4788888888
Q ss_pred hc-----CCcchHHHHHHHHHHhccCC--CHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676 309 QN-----AEFDTKKEAAWAISNATSGG--TQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 309 ~~-----~~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 375 (446)
.+ ....++..++|+++..+..- .++.... ++..|.+.+.++++.++..|++++.++++.+..
T Consensus 505 ~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~ 573 (1023)
T 4hat_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1023)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred hccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 64 23346667889998775531 2333222 566778888888899999999999999987654
No 96
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.11 E-value=0.0011 Score=67.96 Aligned_cols=339 Identities=12% Similarity=0.082 Sum_probs=186.5
Q ss_pred cCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhh---CCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCC
Q 043676 55 MREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLL---SSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA 131 (446)
Q Consensus 55 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L---~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 131 (446)
.+.+ ...++.++++++.++.+-.+.. ...++.++..+ .++++.++..++++++.++..-...... -...
T Consensus 459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~--l~~v 530 (963)
T 2x19_B 459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM--INSV 530 (963)
T ss_dssp CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH--HTTT
T ss_pred CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH--HHHH
Confidence 4455 6889999999999997433211 12233333332 3357889999999999998432111111 2357
Q ss_pred hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC--CHhHHHHHHHHHHHhccCCc-HHHH
Q 043676 132 LIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSN--DEDVLTYACWSLSYLADGTN-DKIQ 208 (446)
Q Consensus 132 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~~~~~l~~l~~~~~-~~~~ 208 (446)
++.++..+ .+ +.++..|++++.+++...+..-......+++.+..++... +...+..+..+++.++...+ +...
T Consensus 531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 78888888 33 7899999999999997643222233466667777777753 57889999999999886543 3333
Q ss_pred HHHHhCcHHHHHHhc----CCC-Cccchh---HHHHHHHHhhcCCc----------------------hhhHHHHhcCCh
Q 043676 209 AVIEAGVCPRLVELL----GHP-SPSVLT---PALRTVGNIVTGDD----------------------FQTQCIINHGAV 258 (446)
Q Consensus 209 ~~~~~~~~~~l~~ll----~~~-~~~~~~---~a~~~l~~l~~~~~----------------------~~~~~~~~~~~~ 258 (446)
..++ .+++.+...+ ..+ +++.+. ..+.+++.+...-. ..... +...++
T Consensus 608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 685 (963)
T 2x19_B 608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VLQQVF 685 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HHHHHH
Confidence 3333 4444444433 222 333333 34444544432111 00111 122345
Q ss_pred HHHHHHhcc-CchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHH----Hhc-CCcchHHHHHHHHHHhcc--CC
Q 043676 259 PYLLDMLVH-NHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNL----LQN-AEFDTKKEAAWAISNATS--GG 330 (446)
Q Consensus 259 ~~l~~~l~~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l----l~~-~~~~v~~~a~~aL~~l~~--~~ 330 (446)
+.+..++.. ..+..+.+.++.++..++..-.+... ..++.++.. ... ..+ ..++.+..++. +.
T Consensus 686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~ 756 (963)
T 2x19_B 686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAH 756 (963)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCC
Confidence 555555532 12567888888888887542111101 234443333 222 122 23344444433 21
Q ss_pred CH---HHHHHHHHcCChHHHHhccc---CCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHH
Q 043676 331 TQ---EQIKHLVREGCVKPLCDLLL---CSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIEN 404 (446)
Q Consensus 331 ~~---~~~~~l~~~~~i~~L~~ll~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~ 404 (446)
++ .....+.+ ..+..+..++. ..+|+++......+..++......--. .+..+.. .++.+..
T Consensus 757 ~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~-----~~~~~~~------i~~~~~~ 824 (963)
T 2x19_B 757 EPAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC-----ERLDVKA------VFQCAVL 824 (963)
T ss_dssp CTTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC-----TTSCHHH------HHHHHHH
T ss_pred CcchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC-----CcccHHH------HHHHHHH
Confidence 11 12222111 12333344433 246899999999999999876654210 0000111 1233344
Q ss_pred hhcCCCHHHHHHHHHHHHHhcCC
Q 043676 405 LQSHDNNEIHEKSVKIFKTYWCG 427 (446)
Q Consensus 405 l~~~~~~~v~~~a~~~l~~~~~~ 427 (446)
...+++.++.+.+.+.+..++..
T Consensus 825 ~l~~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 825 ALKFPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp HTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HcCCCCHHHHHHHHHHHHHHHhc
Confidence 55688899999999999888753
No 97
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.86 E-value=8.2e-05 Score=75.59 Aligned_cols=304 Identities=9% Similarity=0.017 Sum_probs=167.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCC--ChhhHHHHHhcCCh
Q 043676 13 SDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASG--TSENTNVVIDHGAV 90 (446)
Q Consensus 13 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~~i 90 (446)
+.++.+...++.++.....- -....+...+.++.+.+++.+ ++++..|+.||..+... .++.+..++..=.+
T Consensus 204 ~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L 277 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVSW---ININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL 277 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence 46788889999999988773 446677778889999988875 68999999999999873 34444444432112
Q ss_pred HHHHHhhC--CCCHHHHHHHHHHHHHhhC------CCh-----HHHHH--HHHcCChHHHHHHhccccchhHHHHHHHHH
Q 043676 91 PIFVKLLS--SPSDDVREQAVWALGNVAG------DSP-----RCRDL--VLSQGALIPLLAELNEHAKLSMLRNATRTL 155 (446)
Q Consensus 91 ~~L~~~L~--~~~~~v~~~a~~~l~~l~~------~~~-----~~~~~--~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L 155 (446)
...+..+. ..+.++.+..+..+..++. ..+ +.+.. -.-.+.++.++..+ .+++.++...++..+
T Consensus 278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw 356 (980)
T 3ibv_A 278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL 356 (980)
T ss_dssp HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence 22222222 3666766555555543321 111 11100 11124677777777 556667666666665
Q ss_pred HHhhcCC---CC--CChhhhhhhHHHH----HHhhcCC------C----------HhHHHHHHHHHHHhccCCcHHHHHH
Q 043676 156 SNFCRGK---PE--PPFDQVRPALPAL----AQLVHSN------D----------EDVLTYACWSLSYLADGTNDKIQAV 210 (446)
Q Consensus 156 ~~l~~~~---~~--~~~~~~~~~~~~l----~~ll~~~------~----------~~v~~~~~~~l~~l~~~~~~~~~~~ 210 (446)
..+.... +. .........++.| +.-++-+ + .+.|......+..++.-.++.....
T Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~ 436 (980)
T 3ibv_A 357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSY 436 (980)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 5544321 11 1112223333333 3333311 1 1344444422323332233222210
Q ss_pred HHhCcHHHHHHhcC---CCCccchhHHHHHHHHhhcCCchhhHHHH-hc----CChHHHHHHhc-----cCchHHHHHHH
Q 043676 211 IEAGVCPRLVELLG---HPSPSVLTPALRTVGNIVTGDDFQTQCII-NH----GAVPYLLDMLV-----HNHEEIIKKEI 277 (446)
Q Consensus 211 ~~~~~~~~l~~ll~---~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~----~~~~~l~~~l~-----~~~~~~v~~~a 277 (446)
.-.-+.+.+...+. +.++..++.++.+++.++.+......... .. .+++.+..++. .+ .+.++..+
T Consensus 437 ~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~~~ 515 (980)
T 3ibv_A 437 MYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQLLY 515 (980)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHHHH
Confidence 10011222333342 24688899999999999876543221110 01 13444555544 45 78999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc------CCcchHHHHHHHHHHhccCC
Q 043676 278 SWIISNITAGNREQIQAVIDAGLIRPIVNLLQN------AEFDTKKEAAWAISNATSGG 330 (446)
Q Consensus 278 ~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~~aL~~l~~~~ 330 (446)
+++++..+.--.. ....++.++..+-+ .+..++..|+.++.+++...
T Consensus 516 ~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~ 568 (980)
T 3ibv_A 516 MEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI 568 (980)
T ss_dssp HHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh
Confidence 9999998762110 12355555555544 46789999999999998754
No 98
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.80 E-value=0.00065 Score=69.07 Aligned_cols=308 Identities=9% Similarity=0.001 Sum_probs=169.5
Q ss_pred CCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC--hHHHHHHHHcCChHH
Q 043676 57 EDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS--PRCRDLVLSQGALIP 134 (446)
Q Consensus 57 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~--~~~~~~~~~~~~i~~ 134 (446)
.+ +.++..++.++.....- -....+++.+.++.+.+++.+ ++++..|+.+|..+.... +..+..++..=.+..
T Consensus 205 ~~-~~l~~~~L~~l~s~i~w--i~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~ 279 (980)
T 3ibv_A 205 KN-YGTVGLCLQVYAQWVSW--ININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL 279 (980)
T ss_dssp TC-HHHHHHHHHHHHHHTTT--SCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHhh--cCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence 56 78999999999999872 223455667788888888865 899999999999998433 333322222101111
Q ss_pred HHHHhcc-ccchhHHHHHHHHHHHhh------cCCCC-CC-------hhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHh
Q 043676 135 LLAELNE-HAKLSMLRNATRTLSNFC------RGKPE-PP-------FDQVRPALPALAQLVHSNDEDVLTYACWSLSYL 199 (446)
Q Consensus 135 l~~~l~~-~~~~~~~~~a~~~L~~l~------~~~~~-~~-------~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l 199 (446)
.+..+.. ..|.+..+..+..+..++ ...+. .. .....++++.+..++.+++.++...++..+..+
T Consensus 280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~ 359 (980)
T 3ibv_A 280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL 359 (980)
T ss_dssp HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 1211211 355665554444443221 22121 01 133467888999999998888888777776655
Q ss_pred ccC---------CcHHHHHHHHhCcHHHHHHhcCCCCc----------------cchhHHHHHHHHhhcCCchhhHHHHh
Q 043676 200 ADG---------TNDKIQAVIEAGVCPRLVELLGHPSP----------------SVLTPALRTVGNIVTGDDFQTQCIIN 254 (446)
Q Consensus 200 ~~~---------~~~~~~~~~~~~~~~~l~~ll~~~~~----------------~~~~~a~~~l~~l~~~~~~~~~~~~~ 254 (446)
... -......++. .+++.++.-+..++. +.|......+..++.-.+...-..+-
T Consensus 360 l~~~~~~~~~~~~~~~~~~~l~-~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~ 438 (980)
T 3ibv_A 360 LVSLRKESSSKELSASLKEFLK-SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMY 438 (980)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHH-HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHhccccccccHHHHHHHH-HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 421 1122222222 455556666655321 12322222222222212221111000
Q ss_pred cCChHHHHHHhc---cCchHHHHHHHHHHHHHHhcCCHHHHHHHH-Hc----CChHHHHHHHh-----cCCcchHHHHHH
Q 043676 255 HGAVPYLLDMLV---HNHEEIIKKEISWIISNITAGNREQIQAVI-DA----GLIRPIVNLLQ-----NAEFDTKKEAAW 321 (446)
Q Consensus 255 ~~~~~~l~~~l~---~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~----~~i~~L~~ll~-----~~~~~v~~~a~~ 321 (446)
..+.+.+.+.+. +. ++..++.++.+++.++.+......... .. .+++.+..+++ ..++.++..+++
T Consensus 439 ~~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~ 517 (980)
T 3ibv_A 439 SAITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYME 517 (980)
T ss_dssp HHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 011122223332 23 678889999999999775322111000 01 13455555655 567899999999
Q ss_pred HHHHhccCCC--HHHHHHHHHcCChHHHHh--cccCCCHHHHHHHHHHHHHHHHhhhhh
Q 043676 322 AISNATSGGT--QEQIKHLVREGCVKPLCD--LLLCSDPEIVTVCLIGLENILKVGEAE 376 (446)
Q Consensus 322 aL~~l~~~~~--~~~~~~l~~~~~i~~L~~--ll~~~~~~~~~~~~~~l~~l~~~~~~~ 376 (446)
+++..+..-. ++.... +++.++. -+.++++.++..|..++.++++.+...
T Consensus 518 ~l~rys~~~~~~~~~l~~-----~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~ 571 (980)
T 3ibv_A 518 ILVRYASFFDYESAAIPA-----LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ 571 (980)
T ss_dssp HHHHTGGGGGTCCTTHHH-----HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhcCchhHHH-----HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHH
Confidence 9999876421 111111 3444445 455678899999999999999877653
No 99
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.77 E-value=0.0011 Score=57.11 Aligned_cols=191 Identities=9% Similarity=0.093 Sum_probs=124.6
Q ss_pred HHHhcCCCCccchhHHHHHHHHhhcCCchhhH--HHH--hcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-C-----
Q 043676 219 LVELLGHPSPSVLTPALRTVGNIVTGDDFQTQ--CII--NHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-N----- 288 (446)
Q Consensus 219 l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~--~~~--~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~----- 288 (446)
+-.-+.+.++..|..|+..+..+....+.... ... -....+.+...+.+. +..+...++.++..++.. .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 56788999999999999999888764432211 111 123456677788888 999999999999988752 1
Q ss_pred HHHHHHHHHcCChHHHHHH-HhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHH
Q 043676 289 REQIQAVIDAGLIRPIVNL-LQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLE 367 (446)
Q Consensus 289 ~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~ 367 (446)
.......+ ..+++.|+.- +.+....++..+..++..++....+. .. +++.+...+.+.+|.++..++..|.
T Consensus 93 ~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~--~~-----~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 93 NAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI--TQ-----SVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS--HH-----HHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred cchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH--HH-----HHHHHHHHHhccCHHHHHHHHHHHH
Confidence 11111121 2466766653 66677888888988888776532211 11 3466777889999999999999999
Q ss_pred HHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 043676 368 NILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRN 429 (446)
Q Consensus 368 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 429 (446)
+++........ ..++... ..++.+..+..+.+++|++.|..++..+|.--.
T Consensus 165 ~~l~~fg~~~~------~~k~~l~-----~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 165 ELMAAFGLTNV------NVQTFLP-----ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp HHHHHHTTTTC------CHHHHHH-----HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHhCCCcC------CchhHHH-----HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 98875332210 0111111 123456778899999999999999988776433
No 100
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.69 E-value=0.0012 Score=55.22 Aligned_cols=183 Identities=15% Similarity=0.089 Sum_probs=120.5
Q ss_pred HHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhc----CCchhhHH
Q 043676 176 ALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT----GDDFQTQC 251 (446)
Q Consensus 176 ~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~----~~~~~~~~ 251 (446)
.+...+-+.|.+-+..++..|.......+.......+ .+++.+.-.+.+.+..+...++.++..+.. ........
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 4455555667777777777777655443332221111 123333323346677787788877777642 11111111
Q ss_pred HHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCC
Q 043676 252 IINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGG 330 (446)
Q Consensus 252 ~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 330 (446)
- ..-++|.++.-+-++ ...+|..+-.++..+.. .++. .+++.+++-++++++.+|..++..+..+....
T Consensus 129 e-a~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 129 E-VSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp H-HHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 1 123678999999888 88899888877766654 2222 36777888889999999999999999986532
Q ss_pred CHHHHHHHHHcCCh---HHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676 331 TQEQIKHLVREGCV---KPLCDLLLCSDPEIVTVCLIGLENILKVGEA 375 (446)
Q Consensus 331 ~~~~~~~l~~~~~i---~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 375 (446)
... ....+ +.+..++.+.|..++..|+.++..++....+
T Consensus 199 G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 199 GIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp CSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 211 23468 9999999999999999999999988876544
No 101
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.0011 Score=57.00 Aligned_cols=187 Identities=14% Similarity=0.116 Sum_probs=125.8
Q ss_pred HHHHhccccchhHHHHHHHHHHHhhcCCCCC-----ChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcH----
Q 043676 135 LLAELNEHAKLSMLRNATRTLSNFCRGKPEP-----PFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTND---- 205 (446)
Q Consensus 135 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-----~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~---- 205 (446)
+-..+ .+.+...|..++..+..+....+.. .........+.+...+.+.+..+...++.++..++.....
T Consensus 14 l~e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 44566 7888999999999998877654211 1122345566777888889999999999999988754221
Q ss_pred -HHHHHHHhCcHHHHHH-hcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHH
Q 043676 206 -KIQAVIEAGVCPRLVE-LLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISN 283 (446)
Q Consensus 206 -~~~~~~~~~~~~~l~~-ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~ 283 (446)
......-..+++.|+. .+.+....++..+..++..++........ +++.+...+.+. ++.++.+++..|..
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~~K-npkv~~~~l~~l~~ 165 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFEKK-LPKLIAAAANCVYE 165 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGGCS-CHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHhcc-CHHHHHHHHHHHHH
Confidence 1111122356677775 47788888888888888777653322111 245677778888 89999999988888
Q ss_pred Hhc--CCHH-HHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCC
Q 043676 284 ITA--GNRE-QIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGG 330 (446)
Q Consensus 284 l~~--~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 330 (446)
+.. +... .....+. .+++.+..++.+.++.||..|..++..+....
T Consensus 166 ~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 764 1110 0111111 35667778889999999999999999887653
No 102
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.54 E-value=0.0028 Score=53.07 Aligned_cols=178 Identities=13% Similarity=0.064 Sum_probs=120.4
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc---cccchhHHHHHHHHHHHhh----cCCC
Q 043676 91 PIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN---EHAKLSMLRNATRTLSNFC----RGKP 163 (446)
Q Consensus 91 ~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~----~~~~ 163 (446)
+.+...|-+.+..-+..++..|.......+. .+.. .+..+++.+. .+.+..+...++.+|..+. ....
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 3455555566777777777777665543332 2211 2333333221 3567888888887777653 3222
Q ss_pred CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676 164 EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT 243 (446)
Q Consensus 164 ~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~ 243 (446)
.-......-++|.|+.-+.+..+.+|..+-.++..+....+. ..+++.+..-+++.++..|..++..+..+..
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 222223467889999999999999999988888776643221 1355778888899999999999999999875
Q ss_pred CCchhhHHHHhcCCh---HHHHHHhccCchHHHHHHHHHHHHHHhc
Q 043676 244 GDDFQTQCIINHGAV---PYLLDMLVHNHEEIIKKEISWIISNITA 286 (446)
Q Consensus 244 ~~~~~~~~~~~~~~~---~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 286 (446)
..... ....+ +.+..++.+. +..||..|..++..+-.
T Consensus 197 ~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 197 NAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred hcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 33222 23467 9999999998 99999999999987754
No 103
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.52 E-value=0.018 Score=58.82 Aligned_cols=298 Identities=12% Similarity=0.141 Sum_probs=154.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHH-HHhhcCCCChHHHHHHHHHHHHHcCCC-hhhHHHHHh--cC
Q 043676 13 SDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRF-VEFLMREDYPQLQYEAAWVLINIASGT-SENTNVVID--HG 88 (446)
Q Consensus 13 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L-~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~--~~ 88 (446)
+.++.+...++.++..+.+- -....+++.+.++.+ ..++. + ++++..|+.||..+.... ++....+.. ..
T Consensus 218 ~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~ 291 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL 291 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 46778888888999888774 345678888888888 46663 4 789999999999988732 222222211 11
Q ss_pred ChHHHHHhhC-------------CCCHHHHHHHHHHHHHhhCCChHHHHHHHHc-C-------ChHHHHHHhccccchhH
Q 043676 89 AVPIFVKLLS-------------SPSDDVREQAVWALGNVAGDSPRCRDLVLSQ-G-------ALIPLLAELNEHAKLSM 147 (446)
Q Consensus 89 ~i~~L~~~L~-------------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~-------~i~~l~~~l~~~~~~~~ 147 (446)
++..+..++. +.+.+....-+.++..+... ....+... + ++..++.+- ..++.++
T Consensus 292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~---~~~lIe~~p~~~~~l~~~l~~ll~~s-~~~d~ei 367 (1073)
T 3gjx_A 292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKE---HGQLLEKRLNLREALMEALHYMLLVS-EVEETEI 367 (1073)
T ss_dssp HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHCGGGHHHHHHHHHHHHHHT-TCSCHHH
T ss_pred HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHH---HHHHHhcCccchHHHHHHHHHHHHHh-CCCcHHH
Confidence 2222222221 12334444555555554421 11122111 1 122233322 4557777
Q ss_pred HHHHHHHHHHhhcC----CCC----C-------------ChhhhhhhHHHHHHh----hcCC------------------
Q 043676 148 LRNATRTLSNFCRG----KPE----P-------------PFDQVRPALPALAQL----VHSN------------------ 184 (446)
Q Consensus 148 ~~~a~~~L~~l~~~----~~~----~-------------~~~~~~~~~~~l~~l----l~~~------------------ 184 (446)
...++..-..+... .+. . .......++..|... +..+
T Consensus 368 ~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~ 447 (1073)
T 3gjx_A 368 FKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFM 447 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHH
Confidence 77666554444321 110 0 011123333333332 2211
Q ss_pred -C-H--hHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCccchhHHHHHHHHhhcCCchhhH-HHHhcCC
Q 043676 185 -D-E--DVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLTPALRTVGNIVTGDDFQTQ-CIINHGA 257 (446)
Q Consensus 185 -~-~--~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~~ 257 (446)
| . .+....-.++..++.-....... -..+.+.+.+.. .++...+.++|+++.++..-.+..+ .++ ..+
T Consensus 448 ~d~~~~~ly~~mrd~L~~lt~l~~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L-p~v 522 (1073)
T 3gjx_A 448 KDTDSINLYKNMRETLVYLTHLDYVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL-VTV 522 (1073)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHH
T ss_pred hhcchHHHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH-HHH
Confidence 0 0 01111112223332211111111 123344444443 4578899999999999854433222 222 235
Q ss_pred hHHHHHHhccCc----hHHHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCC
Q 043676 258 VPYLLDMLVHNH----EEIIKKEISWIISNITA---GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGG 330 (446)
Q Consensus 258 ~~~l~~~l~~~~----~~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 330 (446)
++.|+.+..++. ...++...+|+++..+. .+++... .++..+++.+.+.++.++..|+.++..++..+
T Consensus 523 i~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-----~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C 597 (1073)
T 3gjx_A 523 IKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-----TVVNKLFEFMHETHDGVQDMACDTFIKIAQKC 597 (1073)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 666666664431 22355556688888764 2333222 36677778888889999999999999998754
No 104
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.51 E-value=0.018 Score=49.37 Aligned_cols=225 Identities=8% Similarity=0.038 Sum_probs=155.0
Q ss_pred hhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcH----HHHHHHH-hCcHHHHHHhcCCCCccchhHHHHHHHHhhcCC
Q 043676 171 RPALPALAQLVHSNDEDVLTYACWSLSYLADGTND----KIQAVIE-AGVCPRLVELLGHPSPSVLTPALRTVGNIVTGD 245 (446)
Q Consensus 171 ~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~----~~~~~~~-~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~ 245 (446)
.+.+..|+..+..-+.+.+..+..++.++.....+ ....+.. ..++..|+..- +++++...+-..|...+. .
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRecir-~ 153 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIR-H 153 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHT-S
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHHHH-h
Confidence 46778888888888999999999999998865432 3333332 23333343333 344455555555555554 5
Q ss_pred chhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcC---ChHHHHHHHhcCCcchHHHHHHH
Q 043676 246 DFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAG---LIRPIVNLLQNAEFDTKKEAAWA 322 (446)
Q Consensus 246 ~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~---~i~~L~~ll~~~~~~v~~~a~~a 322 (446)
+...+.++....+-.+.+.++.+ ..++...|..++..+..........++..+ ++.....++.+++.-+|..++..
T Consensus 154 e~la~~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL 232 (341)
T 1upk_A 154 EPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL 232 (341)
T ss_dssp HHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 66777788888888999999998 999999999999998776566666666533 57778889999999999999999
Q ss_pred HHHhccCC-CHH-HHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhC--h
Q 043676 323 ISNATSGG-TQE-QIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAG--G 398 (446)
Q Consensus 323 L~~l~~~~-~~~-~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~ 398 (446)
|+.+.... +.. ..+++.+..-+..++.+|.+++..++..|..++.-++....+. .++..++.... .
T Consensus 233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~----------~~I~~IL~~Nr~kL 302 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKT----------QPILDILLKNQAKL 302 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCC----------HHHHHHHHHTHHHH
T ss_pred HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCC----------hHHHHHHHHHHHHH
Confidence 99997741 111 2233333345888999999999999999999988777654332 23455554332 3
Q ss_pred HHHHHHhhcCC
Q 043676 399 LEKIENLQSHD 409 (446)
Q Consensus 399 ~~~l~~l~~~~ 409 (446)
++.+.++..+.
T Consensus 303 l~fl~~f~~d~ 313 (341)
T 1upk_A 303 IEFLSKFQNDR 313 (341)
T ss_dssp HHHHHHTTTTC
T ss_pred HHHHHhCCCCC
Confidence 44455555444
No 105
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.48 E-value=0.032 Score=56.92 Aligned_cols=311 Identities=12% Similarity=0.122 Sum_probs=168.4
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHH-HHhhCCCCHHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 043676 50 FVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIF-VKLLSSPSDDVREQAVWALGNVAGD-SPRCRDLVL 127 (446)
Q Consensus 50 L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L-~~~L~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~ 127 (446)
+...+..+..+.+...++.+++...+ - -....+++.+.++.+ ..+| ++++++..|+.+|..+... .++..+.+.
T Consensus 211 l~~iL~~~~~~~lv~~~L~~L~~~~s-W-I~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~ 286 (1073)
T 3gjx_A 211 CQFVMENSQNAPLVHATLETLLRFLN-W-IPLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFE 286 (1073)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHTT-T-SCTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHH
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHH-h-cCHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHH
Confidence 33444444447888888999999887 2 234567778888887 4676 4678999999999998853 232222221
Q ss_pred H--cCChHHHHHHh------------ccccchhHHHHHHHHHHHhhcCCC-----CCC-hhhhhhhHHHHHHhhcCCCHh
Q 043676 128 S--QGALIPLLAEL------------NEHAKLSMLRNATRTLSNFCRGKP-----EPP-FDQVRPALPALAQLVHSNDED 187 (446)
Q Consensus 128 ~--~~~i~~l~~~l------------~~~~~~~~~~~a~~~L~~l~~~~~-----~~~-~~~~~~~~~~l~~ll~~~~~~ 187 (446)
. ...+..+-.++ ....+.+.....+..+..+.+... ... ......++..++.+...++.+
T Consensus 287 ~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~e 366 (1073)
T 3gjx_A 287 TLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETE 366 (1073)
T ss_dssp HHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHH
Confidence 1 01111111111 012234566666666665554430 000 112223344456666677888
Q ss_pred HHHHHHHHHHHhccC----C------------------cHHHHHHHH---hCcHHHHHHhcCCCCc----------cchh
Q 043676 188 VLTYACWSLSYLADG----T------------------NDKIQAVIE---AGVCPRLVELLGHPSP----------SVLT 232 (446)
Q Consensus 188 v~~~~~~~l~~l~~~----~------------------~~~~~~~~~---~~~~~~l~~ll~~~~~----------~~~~ 232 (446)
+...++..-..+... . +.+ ...+. ..+...++.-+..++. .+|+
T Consensus 367 i~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~-~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re 445 (1073)
T 3gjx_A 367 IFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPR-RQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVRE 445 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHH-HHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccccccccchhH-HHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHH
Confidence 887777665554421 0 011 11111 1333444455544321 0111
Q ss_pred ------------HHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccC-chHHHHHHHHHHHHHHhcC-CHH-HHHHHHH
Q 043676 233 ------------PALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHN-HEEIIKKEISWIISNITAG-NRE-QIQAVID 297 (446)
Q Consensus 233 ------------~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~v~~~a~~~l~~l~~~-~~~-~~~~~~~ 297 (446)
..-.++..++.-.......+ ..+.+-+.+..+ .++...+.++|+++.++.. .++ ....+.+
T Consensus 446 ~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~ 521 (1073)
T 3gjx_A 446 FMKDTDSINLYKNMRETLVYLTHLDYVDTEII----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVT 521 (1073)
T ss_dssp ECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHH----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHhhcchHHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHH
Confidence 11112222222111111111 233444444332 2588899999999999753 332 2233333
Q ss_pred cCChHHHHHHHhcCC-----cchHHHHHHHHHHhccC--CCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHH
Q 043676 298 AGLIRPIVNLLQNAE-----FDTKKEAAWAISNATSG--GTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENIL 370 (446)
Q Consensus 298 ~~~i~~L~~ll~~~~-----~~v~~~a~~aL~~l~~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~ 370 (446)
+++.|+.+..... ..++...+++++..... ..++..+. ++..|.+.+.++++.++..|+.++.+++
T Consensus 522 --vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~i~ 594 (1073)
T 3gjx_A 522 --VIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIKIA 594 (1073)
T ss_dssp --HHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHHHH
T ss_pred --HHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 7777777776542 23455556777765442 12333222 6778888889999999999999999999
Q ss_pred Hhhhhh
Q 043676 371 KVGEAE 376 (446)
Q Consensus 371 ~~~~~~ 376 (446)
+.+...
T Consensus 595 ~~C~~~ 600 (1073)
T 3gjx_A 595 QKCRRH 600 (1073)
T ss_dssp HHTGGG
T ss_pred HHHHHH
Confidence 887664
No 106
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.44 E-value=0.0093 Score=48.73 Aligned_cols=194 Identities=15% Similarity=0.091 Sum_probs=124.4
Q ss_pred CccchhHHHHHHHHhhcCCchhhHHHHhc-CChHHHHH----Hh---ccCc---hHHHHHHHHHHHHHHhcCCHHHHHHH
Q 043676 227 SPSVLTPALRTVGNIVTGDDFQTQCIINH-GAVPYLLD----ML---VHNH---EEIIKKEISWIISNITAGNREQIQAV 295 (446)
Q Consensus 227 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~~~~~l~~----~l---~~~~---~~~v~~~a~~~l~~l~~~~~~~~~~~ 295 (446)
+++.|+.|+.-|+.=-...++..-.++.+ |.+..+++ +- ..+. ...-|..-+.+|-...+..++.+..+
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~F 93 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF 93 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHH
Confidence 45568888777766555445555555533 43333322 21 1110 12223333333333333567888899
Q ss_pred HHcCChHHHHHHHhcCC-----cchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHH
Q 043676 296 IDAGLIRPIVNLLQNAE-----FDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENIL 370 (446)
Q Consensus 296 ~~~~~i~~L~~ll~~~~-----~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~ 370 (446)
++..+.-.|..+++..+ ..+|-.++.+++.+.+.++++...++.+.+++|...+.++.+++-.+..|..++.+++
T Consensus 94 l~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 94 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp HHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 99998888888887653 4689999999999999999999999999999999999999999999999999999998
Q ss_pred HhhhhhhcccCCCCccchHHHHHHHhChHHH-HHHhhcCCCHHHHHHHHHHHHHhcC
Q 043676 371 KVGEAERNMGTTIGDVNQYAQFVEEAGGLEK-IENLQSHDNNEIHEKSVKIFKTYWC 426 (446)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~l~~~~~~~v~~~a~~~l~~~~~ 426 (446)
..+..-.-... ...+...-...+.. +..+..++++.+.+....+..++.+
T Consensus 174 ~dd~GL~YiC~------t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd 224 (268)
T 2fv2_A 174 LDDTGLAYICQ------TYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSD 224 (268)
T ss_dssp HSHHHHHHHTS------SHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred ccchhHHHHHc------cHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 76655431111 01122222223333 3455677788776655444444443
No 107
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.36 E-value=0.0012 Score=60.27 Aligned_cols=244 Identities=13% Similarity=0.087 Sum_probs=157.3
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChh--hHHHHHhcCChHHHHHhh--CC--------CCHHHHHHHHHHHH
Q 043676 46 VVPRFVEFLMREDYPQLQYEAAWVLINIASGTSE--NTNVVIDHGAVPIFVKLL--SS--------PSDDVREQAVWALG 113 (446)
Q Consensus 46 ~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~L~~~L--~~--------~~~~v~~~a~~~l~ 113 (446)
+...|+.-|-++. -++|.-|+.+|..+...... .+..-.+....-.++..+ .. --..||+.|+.+|+
T Consensus 175 fcE~L~~DLFdp~-WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYE-WYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 5566777777888 49999999999998752211 111000112222222222 11 12578999999999
Q ss_pred HhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHH
Q 043676 114 NVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYAC 193 (446)
Q Consensus 114 ~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~ 193 (446)
.+ ..-+.- ..++..++..+ .....+++..++-.|.++ .+--. ...++++.++..|.+.|++|+..|+
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL-~DLL~----~Ld~Vv~aVL~GL~D~DDDVRAVAA 320 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL-KEFVE----DKDGLCRKLVSLLSSPDEDIKLLSA 320 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT-GGGCC----CHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH-HHHHH----HHHHHHHHHHhhcCCcccHHHHHHH
Confidence 98 444431 23344444433 556789999999999999 22111 1688899999999999999999999
Q ss_pred HHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCc--cchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchH
Q 043676 194 WSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSP--SVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEE 271 (446)
Q Consensus 194 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 271 (446)
.+|.-++ .++... .++..+...|.+-+. .-....+..|+.|+...... ......+|.+...+.+. -.
T Consensus 321 etLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-IT 389 (800)
T 3oc3_A 321 ELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-VP 389 (800)
T ss_dssp HHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SH
T ss_pred HHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-cH
Confidence 9999999 333333 455667777665322 22344566777777655321 11236889999999999 99
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHH
Q 043676 272 IIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAIS 324 (446)
Q Consensus 272 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 324 (446)
.||..++.++..+. .....+.+ +.+++-.++++++..+..+..
T Consensus 390 SVR~AVL~TL~tfL--~~~~LRLI--------FQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 390 EVRTSILNMVKNLS--EESIDFLV--------AEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHHHTTTCC--CHHHHHHH--------HHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hhhHHHHH--------HHHHHhCCcHHHHHHHHHHHH
Confidence 99999999998876 22222222 224555677788877777764
No 108
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.34 E-value=0.00088 Score=61.12 Aligned_cols=246 Identities=15% Similarity=0.104 Sum_probs=157.4
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHc--CChHHHHHHhc--cc-------cchhHHHHHHHHHHH
Q 043676 89 AVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQ--GALIPLLAELN--EH-------AKLSMLRNATRTLSN 157 (446)
Q Consensus 89 ~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~i~~l~~~l~--~~-------~~~~~~~~a~~~L~~ 157 (446)
..+.|+.-|-++.+++|-.|+.+|..+.............. ...-.++..+. +- .-.++|+.++++|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 45677777788999999999999998874322100000001 11222332221 11 124799999999999
Q ss_pred hhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHH
Q 043676 158 FCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRT 237 (446)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~ 237 (446)
+ ..-+.. ..++..++..+....++++..++-.|..+..--.. . .++++.++..|.+.+.+|+..|+.+
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~-----L-d~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED-----K-DGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC-----H-HHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH-----H-HHHHHHHHhhcCCcccHHHHHHHHH
Confidence 9 554443 34455555566778899999999999998221111 1 2678889999999999999999999
Q ss_pred HHHhhcCCchhhHHHHhcCChHHHHHHhccCch-HHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchH
Q 043676 238 VGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHE-EIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTK 316 (446)
Q Consensus 238 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~ 316 (446)
|..++ .+..... ++..+.+.|.+-.+ ..-....+..|+.++..++. .......+|.|..++++.-+.||
T Consensus 323 LiPIA--~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSVR 392 (800)
T 3oc3_A 323 LCHFP--ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEVR 392 (800)
T ss_dssp HTTSC--CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHHH
T ss_pred hhhhc--chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHHH
Confidence 99988 2332322 34556666654312 12223445666666653321 01123689999999999999999
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHH
Q 043676 317 KEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLE 367 (446)
Q Consensus 317 ~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~ 367 (446)
..++.++..+. .....+.+ +..++-+++++++..+.++-.
T Consensus 393 ~AVL~TL~tfL---~~~~LRLI--------FQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 393 TSILNMVKNLS---EESIDFLV--------AEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHTTTCC---CHHHHHHH--------HHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hhhHHHHH--------HHHHHhCCcHHHHHHHHHHHH
Confidence 99999998887 23332222 335566778888888777664
No 109
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.28 E-value=0.031 Score=47.91 Aligned_cols=201 Identities=12% Similarity=0.101 Sum_probs=142.6
Q ss_pred HHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCch----hhHHHHh-cCChHHHHHHhccCchHHHHHHHHHHHH
Q 043676 208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDF----QTQCIIN-HGAVPYLLDMLVHNHEEIIKKEISWIIS 282 (446)
Q Consensus 208 ~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~----~~~~~~~-~~~~~~l~~~l~~~~~~~v~~~a~~~l~ 282 (446)
+.++..+++..|+..+..=+.+.|..+..++.++...... ....+.. ..++..|+.... ++++-..+...|.
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe---~~diAl~~G~mLR 148 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLR 148 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc---cchhHhHHHHHHH
Confidence 3466779999999999888999999999999999875542 3333332 223333333333 3455555555666
Q ss_pred HHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcC---ChHHHHhcccCCCHHHH
Q 043676 283 NITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREG---CVKPLCDLLLCSDPEIV 359 (446)
Q Consensus 283 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~---~i~~L~~ll~~~~~~~~ 359 (446)
.++. .+.....+...+.+..+.+.++.++-++...|..++..+... .+.....++..+ +......++.+++.-++
T Consensus 149 ecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~-Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTk 226 (341)
T 1upk_A 149 ECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTR-HKLLSAEFLEQHYDRFFSEYEKLLHSENYVTK 226 (341)
T ss_dssp HHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhc-cHHHHHHHHHHhHHHHHHHHHHHhcCCcchhH
Confidence 6654 466667778888899999999999999999999999988766 344444444432 46777889999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHH
Q 043676 360 TVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKT 423 (446)
Q Consensus 360 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 423 (446)
..++..|..++-...+.. ...+.+.+..-+..+..|+.+++..++-.|-.+..-
T Consensus 227 RQSlKLLgelLldr~N~~----------vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKv 280 (341)
T 1upk_A 227 RQSLKLLGELLLDRHNFT----------IMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKV 280 (341)
T ss_dssp HHHHHHHHHHHHSGGGHH----------HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchHHH----------HHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheee
Confidence 999999999987765543 234555555667777788888888887666655443
No 110
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.27 E-value=0.025 Score=46.25 Aligned_cols=187 Identities=10% Similarity=0.095 Sum_probs=122.7
Q ss_pred CHhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHh-------cCCCCcc----ch-hHHHHHHHHhhcCCchhhHH
Q 043676 185 DEDVLTYACWSLSYLADGTNDKIQAVIEA-GVCPRLVEL-------LGHPSPS----VL-TPALRTVGNIVTGDDFQTQC 251 (446)
Q Consensus 185 ~~~v~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~l~~l-------l~~~~~~----~~-~~a~~~l~~l~~~~~~~~~~ 251 (446)
+++.|+.|+.-|+.=-+.-++..-.+..+ |.+..|++= +..+.-. -| ..|+..+..+++ +++.+..
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence 45567777666665444334333333332 555554332 2222111 12 345555666666 5667788
Q ss_pred HHhcCChHHHHHHhccCc----hHHHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHh
Q 043676 252 IINHGAVPYLLDMLVHNH----EEIIKKEISWIISNITA-GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNA 326 (446)
Q Consensus 252 ~~~~~~~~~l~~~l~~~~----~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 326 (446)
++++++.-.+...|+... -+.+|-.+.++++.+.. ++++.+.++.+.+++|..++.++.++.-.|..|...+..+
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 899988888888876542 35788899999999987 6889999999999999999999999999999999999988
Q ss_pred ccCCCHHHHHHHHH--------cCChHHHHh-cccCCCHHHHHHHHHHHHHHHHhhh
Q 043676 327 TSGGTQEQIKHLVR--------EGCVKPLCD-LLLCSDPEIVTVCLIGLENILKVGE 374 (446)
Q Consensus 327 ~~~~~~~~~~~l~~--------~~~i~~L~~-ll~~~~~~~~~~~~~~l~~l~~~~~ 374 (446)
.. ++....++.. ..++..++. +.+++++.+.+.++.+..++.+...
T Consensus 173 L~--dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~r 227 (268)
T 2fv2_A 173 LL--DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR 227 (268)
T ss_dssp HH--SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHH
T ss_pred hc--cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHH
Confidence 76 3344433322 112333333 3467788888888888777665443
No 111
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.23 E-value=0.01 Score=53.31 Aligned_cols=248 Identities=13% Similarity=0.079 Sum_probs=148.4
Q ss_pred CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHH
Q 043676 100 PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQ 179 (446)
Q Consensus 100 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ 179 (446)
+++..+..|...|......-|..++. ++..++.+. .+.+..+|..|+..|..+|.+ .....+...|++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence 57999999999999999888887666 467899999 788999999999999999987 336788899999
Q ss_pred hhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcC-CchhhHHHHhcCCh
Q 043676 180 LVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG-DDFQTQCIINHGAV 258 (446)
Q Consensus 180 ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~~ 258 (446)
+|+++++.-...+-.+|..+...++. +.+..+..-+...++.+|+.++..|..-... .......-.+.-++
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~ 179 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELIL 179 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHH
Confidence 99999888888887788777766553 2233333333345778888888777544321 11111122333456
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHh------cCCcchHHHHHHHHHH----hc
Q 043676 259 PYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAVIDAGLIRPIVNLLQ------NAEFDTKKEAAWAISN----AT 327 (446)
Q Consensus 259 ~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~L~~ll~------~~~~~v~~~a~~aL~~----l~ 327 (446)
..+.+.|++-...+. ...+..|..+-. .+...++.++ +.+.+... ..|++.....+.++.. ++
T Consensus 180 ~~ikK~L~DVT~~EF-~L~m~lL~~lkl~~t~~g~qeLv-----~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS 253 (507)
T 3u0r_A 180 TESKKVLEDVTGEEF-VLFMKILSGLKSLQTVSGRQQLV-----ELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFS 253 (507)
T ss_dssp HHHHHHTTSCCHHHH-HHHHHHHHTSGGGSSHHHHHHHH-----HHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCB
T ss_pred HHHHHHhccccHHHH-HHHHHHHHhcccccCchHHHHHH-----HHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhc
Confidence 667777755422222 233344444322 3444444332 22333221 1244444444444333 33
Q ss_pred cCC-CHHHHHHHHHcCChHHHHhcccCC-CHHHHHHHHHHHHHHHHhhh
Q 043676 328 SGG-TQEQIKHLVREGCVKPLCDLLLCS-DPEIVTVCLIGLENILKVGE 374 (446)
Q Consensus 328 ~~~-~~~~~~~l~~~~~i~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~~ 374 (446)
... +.....++.+ .++|.+-.+-... .++.+...+.++..+..+..
T Consensus 254 ~~v~StkFv~y~~~-kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~ 301 (507)
T 3u0r_A 254 KNVHSTRFVTYFCE-QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG 301 (507)
T ss_dssp TTBCCHHHHHHHHH-HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred cCCChHHHHHHHHH-hhccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence 322 3445555444 4777665554432 22355555666666555544
No 112
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.10 E-value=0.00019 Score=59.67 Aligned_cols=64 Identities=14% Similarity=0.045 Sum_probs=37.2
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcC
Q 043676 9 AGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHG 88 (446)
Q Consensus 9 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 88 (446)
++++++++.++..++..+. ...+..++++++ +.+|..++..| .
T Consensus 57 ~ll~d~~~~VR~~AA~~l~-------------------~~~l~~L~~D~~-~~VR~~aA~~L---~-------------- 99 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYSP-------------------VEALTPLIRDSD-EVVRRAVAYRL---P-------------- 99 (244)
T ss_dssp GGTTCSSHHHHHHHHTTSC-------------------GGGGGGGTTCSS-HHHHHHHHTTS---C--------------
T ss_pred HHhcCCCHHHHHHHHHhCC-------------------HHHHHHHccCcC-HHHHHHHHHHC---C--------------
Confidence 4456778888887776320 223455566666 67777766532 0
Q ss_pred ChHHHHHhhCCCCHHHHHHHHH
Q 043676 89 AVPIFVKLLSSPSDDVREQAVW 110 (446)
Q Consensus 89 ~i~~L~~~L~~~~~~v~~~a~~ 110 (446)
.+.|..+++++++.||..++.
T Consensus 100 -~~~L~~ll~D~d~~VR~~aA~ 120 (244)
T 1lrv_A 100 -REQLSALMFDEDREVRITVAD 120 (244)
T ss_dssp -SGGGGGTTTCSCHHHHHHHHH
T ss_pred -HHHHHHHHcCCCHHHHHHHHH
Confidence 134555566666666665554
No 113
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.04 E-value=0.00034 Score=58.23 Aligned_cols=88 Identities=18% Similarity=0.117 Sum_probs=57.5
Q ss_pred HhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCC
Q 043676 52 EFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA 131 (446)
Q Consensus 52 ~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 131 (446)
.++.+++ +.++..++..+ ....+..+++++++.||..++..+.
T Consensus 57 ~ll~d~~-~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L~------------------ 99 (244)
T 1lrv_A 57 QYLADPF-WERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRLP------------------ 99 (244)
T ss_dssp GGTTCSS-HHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTSC------------------
T ss_pred HHhcCCC-HHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHCC------------------
Confidence 4557777 89999888843 1345778889999999999886421
Q ss_pred hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHH
Q 043676 132 LIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACW 194 (446)
Q Consensus 132 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~ 194 (446)
.+.+..++ .+++..++..++..+ . .+.+..+++++++.++..+..
T Consensus 100 ~~~L~~ll-~D~d~~VR~~aA~~l---~--------------~~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 100 REQLSALM-FDEDREVRITVADRL---P--------------LEQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp SGGGGGTT-TCSCHHHHHHHHHHS---C--------------TGGGGGGTTCSSHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHhC---C--------------HHHHHHHHcCCCHHHHHHHHH
Confidence 12333444 677778877777632 1 013445566777777777765
No 114
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=96.97 E-value=0.1 Score=44.66 Aligned_cols=154 Identities=12% Similarity=0.108 Sum_probs=110.3
Q ss_pred HHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-CCCHhHHHH
Q 043676 113 GNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH-SNDEDVLTY 191 (446)
Q Consensus 113 ~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~v~~~ 191 (446)
.++.......-+-+++.+++..+...+ ..++.++.+..+..|...+... ........+.+|.++..++ ++++++...
T Consensus 267 L~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 267 LGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEEe
Confidence 344445556677788889999988888 7889999999999998887664 2233344677888888876 678999999
Q ss_pred HHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-------CCccchhHHHHHHHHhhcC--------------------
Q 043676 192 ACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-------PSPSVLTPALRTVGNIVTG-------------------- 244 (446)
Q Consensus 192 ~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-------~~~~~~~~a~~~l~~l~~~-------------------- 244 (446)
....+.|...+.....+..+..|.+..|...+.. .+..-+..||++++|-...
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~G 424 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTAG 424 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCCC
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccCC
Confidence 9999999999988888888888999998887644 2223455566666654321
Q ss_pred --CchhhHHHHhcCChHHHHHHhccC
Q 043676 245 --DDFQTQCIINHGAVPYLLDMLVHN 268 (446)
Q Consensus 245 --~~~~~~~~~~~~~~~~l~~~l~~~ 268 (446)
...+...+++..++..++..|+-+
T Consensus 425 ~~EqQQVckFIE~d~LKrLMtCLS~e 450 (619)
T 3c2g_A 425 PNEKQQVCKFIEIDILKKLMSCLSCE 450 (619)
T ss_dssp HHHHHHHHGGGSHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 012233455556777777777543
No 115
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=96.88 E-value=0.0076 Score=49.90 Aligned_cols=161 Identities=17% Similarity=0.139 Sum_probs=108.8
Q ss_pred chhhHHHHhcCChHHHHHHhcc----------CchHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCCcc
Q 043676 246 DFQTQCIINHGAVPYLLDMLVH----------NHEEIIKKEISWIISNITAGNREQIQAVID-AGLIRPIVNLLQNAEFD 314 (446)
Q Consensus 246 ~~~~~~~~~~~~~~~l~~~l~~----------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~ 314 (446)
....+.+ ..+++..|+.+|.. ..+......++.+|..+. .+......++. .+.+..+...+.+.++.
T Consensus 34 ~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s~~~~ 111 (233)
T 2f31_A 34 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPN 111 (233)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCTTSHH
T ss_pred cHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCCCCch
Confidence 3445555 34566666666532 114566777888888885 45666677765 45788888888888999
Q ss_pred hHHHHHHHHHHhccCCCH----H-HHHHH------HHcCChHHHHhccc-CCCHHHHHHHHHHHHHHHHhhhhhhcccCC
Q 043676 315 TKKEAAWAISNATSGGTQ----E-QIKHL------VREGCVKPLCDLLL-CSDPEIVTVCLIGLENILKVGEAERNMGTT 382 (446)
Q Consensus 315 v~~~a~~aL~~l~~~~~~----~-~~~~l------~~~~~i~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 382 (446)
++..++..|..++...++ + ....+ .+..-...+++.+. +.+.+.+..++..+..++...++...+
T Consensus 112 ~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R--- 188 (233)
T 2f31_A 112 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR--- 188 (233)
T ss_dssp HHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHH---
T ss_pred HHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHH---
Confidence 999999888877665321 1 11111 22334666777776 456788888888888888776554321
Q ss_pred CCccchHHHHHHHhChHHHHHHhhcCCCHHHHH
Q 043676 383 IGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHE 415 (446)
Q Consensus 383 ~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~ 415 (446)
...+..|...|..+.+..+...+++++..
T Consensus 189 ----~~lR~ef~~~Gl~~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 189 ----VHIRSELMRLGLHQVLQELREIENEDMKV 217 (233)
T ss_dssp ----HHHHHHHHHTTHHHHHHHHHHCCCHHHHH
T ss_pred ----HHHHHHHHHCChHHHHHHHhccCCHHHHH
Confidence 22577888999999999999888888753
No 116
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.85 E-value=0.25 Score=44.58 Aligned_cols=292 Identities=11% Similarity=0.041 Sum_probs=168.3
Q ss_pred CCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHH
Q 043676 57 EDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLL 136 (446)
Q Consensus 57 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~ 136 (446)
++ +..+..|+..+......-|+..+. ++..++.+..+.+..+|.+|+..|..+|.+ +.... +...|+
T Consensus 40 g~-~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~k-----iaDvL~ 106 (507)
T 3u0r_A 40 GG-TKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPR-----VADILT 106 (507)
T ss_dssp SC-HHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHH-----HHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhh-----HHHHHH
Confidence 45 799999999999999878887665 478999999999999999999999999976 22222 356788
Q ss_pred HHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccC-CcHHHHHHHHhCc
Q 043676 137 AELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADG-TNDKIQAVIEAGV 215 (446)
Q Consensus 137 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~-~~~~~~~~~~~~~ 215 (446)
++| ...++.-...+-++|..+...++ .+.+..+...+.++++.+|+.++..|..-... ..+....-.+.-+
T Consensus 107 QlL-qtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i 178 (507)
T 3u0r_A 107 QLL-QTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI 178 (507)
T ss_dssp HHT-TCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred HHH-hccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence 888 56666656666666666655432 34455555555567899999998888654321 1111111222234
Q ss_pred HHHHHHhcCCCCccchhHHHHHHHHhhcCC-chhhHHHHhcCChHHHHHHh------ccCchHHHHHHHHHHHHHH----
Q 043676 216 CPRLVELLGHPSPSVLTPALRTVGNIVTGD-DFQTQCIINHGAVPYLLDML------VHNHEEIIKKEISWIISNI---- 284 (446)
Q Consensus 216 ~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~l~~~l------~~~~~~~v~~~a~~~l~~l---- 284 (446)
+..+.+.|.+-...--...+.+|..+-... ....+. +++.+.... ... +.+.....+.++...
T Consensus 179 ~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qe-----Lv~ii~eQa~L~~~f~~s-D~e~vdRlI~C~~~ALP~F 252 (507)
T 3u0r_A 179 LTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQ-----LVELVAEQADLEQTFNPS-DPDCVDRLLQCTRQAVPLF 252 (507)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHH-----HHHHHHHHHTTTSCCCSS-CHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHH-----HHHHHHHHHhccCCCCCc-CHHHHHHHHHHHHHHHHHh
Confidence 455666665544333334445554443322 222222 233333332 112 333333333333222
Q ss_pred hc--CCHHHHHHHHHcCChHHHHHHHhcC-CcchHHHHHHHHHHhccCCC-HHHHHHHHHcCChHHHHhcccCCC-----
Q 043676 285 TA--GNREQIQAVIDAGLIRPIVNLLQNA-EFDTKKEAAWAISNATSGGT-QEQIKHLVREGCVKPLCDLLLCSD----- 355 (446)
Q Consensus 285 ~~--~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~i~~L~~ll~~~~----- 355 (446)
+. .+.....++.+ .++|.+-.+-... .++.+-..+.++..++.... .+....++. .++..|...+-.+.
T Consensus 253 S~~v~StkFv~y~~~-kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~-~iy~~L~~ymP~~p~~~~~ 330 (507)
T 3u0r_A 253 SKNVHSTRFVTYFCE-QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLR-KLFDKLLEYMPLPPEEAEN 330 (507)
T ss_dssp BTTBCCHHHHHHHHH-HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHH-HHHHHHHTTSCCCC-----
T ss_pred ccCCChHHHHHHHHH-hhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHH-HHHHHHHHHCCCCcccccc
Confidence 22 35555565555 4777555443322 33478899999999988765 232222221 13444544442211
Q ss_pred --------H----HHHHHHHHHHHHHHHhhhhhh
Q 043676 356 --------P----EIVTVCLIGLENILKVGEAER 377 (446)
Q Consensus 356 --------~----~~~~~~~~~l~~l~~~~~~~~ 377 (446)
| .-.++.+.++.++....++.-
T Consensus 331 ~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l 364 (507)
T 3u0r_A 331 GENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFL 364 (507)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHTTCTHHH
T ss_pred cccccccCcccchhHHHHHHHHHHHHhhhChhhh
Confidence 1 244666777777776655543
No 117
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.76 E-value=0.069 Score=43.35 Aligned_cols=145 Identities=15% Similarity=0.059 Sum_probs=105.2
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHH-hhCCCCHHHHHHHHHHHHHhhC-CChHHH
Q 043676 46 VVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVK-LLSSPSDDVREQAVWALGNVAG-DSPRCR 123 (446)
Q Consensus 46 ~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-~L~~~~~~v~~~a~~~l~~l~~-~~~~~~ 123 (446)
.++....+.+++. .++|..|+..|+.. ...+ ..++.+.. +-.+++..|++.+..++..++. ..++
T Consensus 72 ~~~la~~L~~~~~-deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 72 IKKLAFLAYQSDV-YQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp HHHHHHHHHTCSS-HHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHhCcc-hHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence 3444555666777 79999999998888 3111 23566666 5567889999999999999884 3332
Q ss_pred HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC
Q 043676 124 DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGT 203 (446)
Q Consensus 124 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~ 203 (446)
..++.+.... .+++..+++.++..+.--+.. + ........++|.+..+..+++.-|+..+.+.|..++...
T Consensus 139 ------~~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 139 ------KALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp ------TTHHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred ------HHHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 1355666666 889999999998877654433 1 122333567788888888889999999999999999999
Q ss_pred cHHHHHHHH
Q 043676 204 NDKIQAVIE 212 (446)
Q Consensus 204 ~~~~~~~~~ 212 (446)
|+....+++
T Consensus 210 Pd~V~~~~~ 218 (240)
T 3l9t_A 210 PDLVKIELK 218 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 987776555
No 118
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.40 E-value=0.061 Score=43.64 Aligned_cols=143 Identities=10% Similarity=0.052 Sum_probs=100.3
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHH-hhcCCCHhHHHHHHHHHHHhcc-CCcHHHHHHH
Q 043676 134 PLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQ-LVHSNDEDVLTYACWSLSYLAD-GTNDKIQAVI 211 (446)
Q Consensus 134 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~-ll~~~~~~v~~~~~~~l~~l~~-~~~~~~~~~~ 211 (446)
.+...|-++...+++..|+..|..+ . .....++.+.. +..+++..|++.+..++..++. ..++
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------ 138 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------ 138 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------
Confidence 4444444666678998999988877 2 12567788887 5567789999999999998875 3332
Q ss_pred HhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHH
Q 043676 212 EAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQ 291 (446)
Q Consensus 212 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~ 291 (446)
..++.+.....+++..+|..|.....-.+.. +.... -...+++.+-.+..++ +..||+..+|.|..++..+|+-
T Consensus 139 --~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~--dp~~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 139 --KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKE--NPNEAIRRIADLKEDV-SEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp --TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTT--CHHHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred --HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhc--CHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCHHH
Confidence 2567788899999999999998876543332 11000 0011344455555566 8999999999999999998987
Q ss_pred HHHHHH
Q 043676 292 IQAVID 297 (446)
Q Consensus 292 ~~~~~~ 297 (446)
...+++
T Consensus 213 V~~~~~ 218 (240)
T 3l9t_A 213 VKIELK 218 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776665
No 119
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=96.26 E-value=0.022 Score=50.92 Aligned_cols=161 Identities=17% Similarity=0.136 Sum_probs=111.8
Q ss_pred CchhhHHHHhcCChHHHHHHhcc----------CchHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCCc
Q 043676 245 DDFQTQCIINHGAVPYLLDMLVH----------NHEEIIKKEISWIISNITAGNREQIQAVID-AGLIRPIVNLLQNAEF 313 (446)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~l~~----------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~ 313 (446)
.....+.+. .+++..|+.+|.. ..+......++.||..+. .+......++. ...+..+...+.+..+
T Consensus 99 ~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~~i~~l~~~L~s~~~ 176 (383)
T 3eg5_B 99 PVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVP 176 (383)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSSHHHHHHHTCCTTSH
T ss_pred ccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChHHHHHHHHHhCCCch
Confidence 345555565 4566777777631 113466777888888885 45666677775 5678889999988899
Q ss_pred chHHHHHHHHHHhccCCCHH-----HHHHH------HHcCChHHHHhcccC-CCHHHHHHHHHHHHHHHHhhhhhhcccC
Q 043676 314 DTKKEAAWAISNATSGGTQE-----QIKHL------VREGCVKPLCDLLLC-SDPEIVTVCLIGLENILKVGEAERNMGT 381 (446)
Q Consensus 314 ~v~~~a~~aL~~l~~~~~~~-----~~~~l------~~~~~i~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 381 (446)
.++..++..|..++....++ ....+ .+..-...+++.++. .+.+.+..++..+..++...++...+
T Consensus 177 ~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R-- 254 (383)
T 3eg5_B 177 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR-- 254 (383)
T ss_dssp HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHH--
T ss_pred HHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHH--
Confidence 99999999998887654311 11111 223447778888876 57788888888888888766554322
Q ss_pred CCCccchHHHHHHHhChHHHHHHhhcCCCHHHH
Q 043676 382 TIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIH 414 (446)
Q Consensus 382 ~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~ 414 (446)
-..+..|...|..+.+..+...+++++.
T Consensus 255 -----~~lR~ef~~~Gl~~il~~lr~~~~~~L~ 282 (383)
T 3eg5_B 255 -----VHIRSELMRLGLHQVLQELREIENEDMK 282 (383)
T ss_dssp -----HHHHHHHHHTTHHHHHHHHTTSCCHHHH
T ss_pred -----HHHHHHHHHCChHHHHHHHhcCCChhHH
Confidence 2256788899999999998888888764
No 120
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=96.14 E-value=0.29 Score=42.05 Aligned_cols=173 Identities=10% Similarity=0.065 Sum_probs=105.3
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCC----hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChH
Q 043676 47 VPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGA----VPIFVKLLSS-PSDDVREQAVWALGNVAGDSPR 121 (446)
Q Consensus 47 ~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~----i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~ 121 (446)
+..+.+++ +-. .+.+.-++..+.-.+. ++.....+.+... +..+...+.+ ..+..+-.++++++|+.....
T Consensus 105 l~~l~kil-~WP-~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~- 180 (304)
T 3ebb_A 105 LQILWKAI-NCP-EDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA- 180 (304)
T ss_dssp HHHHHHHH-TSC-TTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred HHHHHHHH-cCC-HHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence 45666665 333 4667777788777776 6666665554322 2233444443 456678899999999995544
Q ss_pred HHHHHHHcCChHHHHHHhc---cccchhHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcC-CCHhHHHHHHHHH
Q 043676 122 CRDLVLSQGALIPLLAELN---EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHS-NDEDVLTYACWSL 196 (446)
Q Consensus 122 ~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~~~~~l 196 (446)
.+..+.. ....++..+. .+.+..++..++..+.|++... ..........++..+..+++. .|.+....++.++
T Consensus 181 g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 181 GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 5555554 2344444442 3457788888888888887653 112222333455555566653 4899999999999
Q ss_pred HHhccCCcHHHHHHHHhCcHHHHHHhcCC
Q 043676 197 SYLADGTNDKIQAVIEAGVCPRLVELLGH 225 (446)
Q Consensus 197 ~~l~~~~~~~~~~~~~~~~~~~l~~ll~~ 225 (446)
+++...+.+..+.....|+-..+-...+.
T Consensus 259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 99998765444433333544444444443
No 121
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=95.92 E-value=0.087 Score=47.20 Aligned_cols=162 Identities=17% Similarity=0.131 Sum_probs=108.5
Q ss_pred chhhHHHHhcCChHHHHHHhcc----------CchHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCCcc
Q 043676 246 DFQTQCIINHGAVPYLLDMLVH----------NHEEIIKKEISWIISNITAGNREQIQAVID-AGLIRPIVNLLQNAEFD 314 (446)
Q Consensus 246 ~~~~~~~~~~~~~~~l~~~l~~----------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~ 314 (446)
....+.+. .+++..|+.+|.. ..+......++.||..+. .+......++. .+.+..+...+.+.++.
T Consensus 38 ~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s~~~~ 115 (386)
T 2bnx_A 38 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPN 115 (386)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCTTSHH
T ss_pred cHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCCCCch
Confidence 34444443 3455556555531 114566778888888885 45666666665 46788888888888899
Q ss_pred hHHHHHHHHHHhccCCCHH-----HHHH------HHHcCChHHHHhccc-CCCHHHHHHHHHHHHHHHHhhhhhhcccCC
Q 043676 315 TKKEAAWAISNATSGGTQE-----QIKH------LVREGCVKPLCDLLL-CSDPEIVTVCLIGLENILKVGEAERNMGTT 382 (446)
Q Consensus 315 v~~~a~~aL~~l~~~~~~~-----~~~~------l~~~~~i~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 382 (446)
++..++..|..++....++ .... ..+..-+..+++.+. +.+.+.+..++..+..++...++...+
T Consensus 116 ~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R--- 192 (386)
T 2bnx_A 116 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR--- 192 (386)
T ss_dssp HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHH---
T ss_pred HHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHH---
Confidence 9999988887776654311 1111 112334666777776 556788888898888888876654422
Q ss_pred CCccchHHHHHHHhChHHHHHHhhcCCCHHHHHH
Q 043676 383 IGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEK 416 (446)
Q Consensus 383 ~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~ 416 (446)
...+..|...|..+.+..+....++++...
T Consensus 193 ----~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 193 ----VHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp ----HHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred ----HHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 225788999999999999998888887533
No 122
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.58 E-value=0.096 Score=45.02 Aligned_cols=109 Identities=11% Similarity=0.022 Sum_probs=72.2
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhc--CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHH--HHH
Q 043676 50 FVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDH--GAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC--RDL 125 (446)
Q Consensus 50 L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~--~~~ 125 (446)
+...+.++..+..+..++++++|+.. ++..+..+... .+++.+...+.+++..++..+..++.|++...... .+.
T Consensus 152 l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~ 230 (304)
T 3ebb_A 152 LINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG 230 (304)
T ss_dssp HHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH
Confidence 33444444346779999999999998 67777776643 34455555666678999999999999998321000 011
Q ss_pred HHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676 126 VLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG 161 (446)
Q Consensus 126 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 161 (446)
. ...+..+..++....+.+....++-+|+++...
T Consensus 231 ~--~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 231 K--AQCLSLISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp H--HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred H--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 0 113344455554556788888899999998865
No 123
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.25 E-value=3.6 Score=43.19 Aligned_cols=288 Identities=9% Similarity=0.038 Sum_probs=161.8
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhc-CCCChHHHHHHHHHHHHHcCC-----ChhhHHHHHhcC
Q 043676 15 DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLM-REDYPQLQYEAAWVLINIASG-----TSENTNVVIDHG 88 (446)
Q Consensus 15 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~~~~~ 88 (446)
++..|..|-..|.++-.. + .....+...|. .+.++.+|..|+..|.+.... +++.+..+. ..
T Consensus 26 ~~~~r~~Ae~~L~~~~~~--p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~~ 93 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEK--C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-NS 93 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHH--C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-HH
T ss_pred ChHHHHHHHHHHHHHHhC--c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HH
Confidence 666777777777765332 1 23444444333 332389999999999987642 234444433 33
Q ss_pred ChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCC-hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-C
Q 043676 89 AVPIFVKLLSS---PSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK-P 163 (446)
Q Consensus 89 ~i~~L~~~L~~---~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~ 163 (446)
+++.+...... .+..++.....++..++... |.. =.+.++.+++.+. . ++.....++.+|..++++. .
T Consensus 94 ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~-----Wp~ll~~L~~~~~-~-~~~~~e~~L~iL~~L~Eev~~ 166 (1204)
T 3a6p_A 94 VMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH-----WPDMLIELDTLSK-Q-GETQTELVMFILLRLAEDVVT 166 (1204)
T ss_dssp HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHHHHH-T-CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHhc-C-CHHHHHHHHHHHHHHHHHHcc
Confidence 45555443221 45888888888888887321 110 0124566777773 2 4556777888888887652 1
Q ss_pred CCCh--hh-----------hhhhHHHHHHhhcC-------------------CCHhHHHHHHHHHHHhccCCcHHHHHHH
Q 043676 164 EPPF--DQ-----------VRPALPALAQLVHS-------------------NDEDVLTYACWSLSYLADGTNDKIQAVI 211 (446)
Q Consensus 164 ~~~~--~~-----------~~~~~~~l~~ll~~-------------------~~~~v~~~~~~~l~~l~~~~~~~~~~~~ 211 (446)
.... .. ...+++.+..+++. .+..+...++.++.+....-+.. .+.
T Consensus 167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~--~i~ 244 (1204)
T 3a6p_A 167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMS--HIT 244 (1204)
T ss_dssp SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHH--HHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHH--HHH
Confidence 1110 00 11333444444432 13456777888887766554421 233
Q ss_pred HhC--cHHHHHHhcCCCCccchhHHHHHHHHhhcCCc--hhhHHHHhc---CChHHHHHHhc-------cCchHHHHHHH
Q 043676 212 EAG--VCPRLVELLGHPSPSVLTPALRTVGNIVTGDD--FQTQCIINH---GAVPYLLDMLV-------HNHEEIIKKEI 277 (446)
Q Consensus 212 ~~~--~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~---~~~~~l~~~l~-------~~~~~~v~~~a 277 (446)
+.. +++.+..++. +++++..|+.||..+..... .....++.. ..+..++..+. +..+.++.+..
T Consensus 245 ~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l 322 (1204)
T 3a6p_A 245 AENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRL 322 (1204)
T ss_dssp TTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHH
T ss_pred hccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHH
Confidence 332 6777776665 57789999999999987542 221122211 11234444432 11145666677
Q ss_pred HHHHHHHhcCCHHHHHHHHH-----------cCChHHHHHHHhcCCcchHHHHHHHHHHhccC
Q 043676 278 SWIISNITAGNREQIQAVID-----------AGLIRPIVNLLQNAEFDTKKEAAWAISNATSG 329 (446)
Q Consensus 278 ~~~l~~l~~~~~~~~~~~~~-----------~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 329 (446)
+..+..+.. . ...++. .++++.++.++.+.+..+-..++.....+...
T Consensus 323 ~~ll~~lg~---~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 323 CQVLCALGN---Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHH---H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHH---H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 777776652 1 222221 13577788888777777777777766666554
No 124
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.24 E-value=1 Score=40.17 Aligned_cols=153 Identities=12% Similarity=0.115 Sum_probs=97.5
Q ss_pred HHHhhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC-----------CCChHHHHHHHHHHHHHc
Q 043676 7 LVAGVWSDD-NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMR-----------EDYPQLQYEAAWVLINIA 74 (446)
Q Consensus 7 l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~-----------~~~~~~~~~a~~~L~~l~ 74 (446)
.++.|++.- ..-....+..|+..+...+....+.+. .+++..|+..|.. .+ ...+..+++||..+.
T Consensus 71 yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d-~~~q~~~l~CLkalm 148 (383)
T 3eg5_B 71 YIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYD-SRNQHEIIRCLKAFM 148 (383)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------C-HHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhh-HHHHHHHHHHHHHHh
Confidence 455555542 222223455555444443233456666 5678888888752 12 578899999999998
Q ss_pred CCChhhHHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-HH-HHHHH----------HcCChHHHHHHhcc
Q 043676 75 SGTSENTNVVID-HGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP-RC-RDLVL----------SQGALIPLLAELNE 141 (446)
Q Consensus 75 ~~~~~~~~~~~~-~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~-~~-~~~~~----------~~~~i~~l~~~l~~ 141 (446)
. +......++. ...+..+...+.++++.++..++..|..+|.... .. ...+. +..-...++..+..
T Consensus 149 N-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~ 227 (383)
T 3eg5_B 149 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 227 (383)
T ss_dssp S-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred c-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc
Confidence 7 6666666664 4788999999999999999999999999995442 21 22222 22346667777744
Q ss_pred ccchhHHHHHHHHHHHhhcCC
Q 043676 142 HAKLSMLRNATRTLSNFCRGK 162 (446)
Q Consensus 142 ~~~~~~~~~a~~~L~~l~~~~ 162 (446)
..+.+.+..++..+-.+....
T Consensus 228 ~~~~e~~~~~m~lIN~li~~~ 248 (383)
T 3eg5_B 228 GTSIALKVGCLQLINALITPA 248 (383)
T ss_dssp TSCHHHHHHHHHHHHHHHTTC
T ss_pred cCcHHHHHHHHHHHHHHHcCC
Confidence 456666666666555565554
No 125
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.20 E-value=0.92 Score=37.32 Aligned_cols=154 Identities=12% Similarity=0.110 Sum_probs=92.8
Q ss_pred HHHhhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC----C------CChHHHHHHHHHHHHHcC
Q 043676 7 LVAGVWSDD-NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMR----E------DYPQLQYEAAWVLINIAS 75 (446)
Q Consensus 7 l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~----~------~~~~~~~~a~~~L~~l~~ 75 (446)
.++.|++.. +..-...+..|...+...+....+.+ ..+++..|+..|.. . ...+.+..++.||..+..
T Consensus 5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn 83 (233)
T 2f31_A 5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 83 (233)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence 456666543 22222334444433443323345666 45678888877753 1 125678899999999987
Q ss_pred CChhhHHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-HH-HHHHH----------HcCChHHHHHHhccc
Q 043676 76 GTSENTNVVID-HGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP-RC-RDLVL----------SQGALIPLLAELNEH 142 (446)
Q Consensus 76 ~~~~~~~~~~~-~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~-~~-~~~~~----------~~~~i~~l~~~l~~~ 142 (446)
+......+.. .+.+..+...|.++++.++..++..|..+|.... .. ...+. +..-..+++..+...
T Consensus 84 -~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 162 (233)
T 2f31_A 84 -NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 162 (233)
T ss_dssp -SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred -ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC
Confidence 6666666664 4678999999999999999999999988885432 11 22221 122345566666434
Q ss_pred cchhHHHHHHHHHHHhhcCC
Q 043676 143 AKLSMLRNATRTLSNFCRGK 162 (446)
Q Consensus 143 ~~~~~~~~a~~~L~~l~~~~ 162 (446)
.+.+.+..++..+-.+....
T Consensus 163 ~~~e~~~~~m~lIN~li~~~ 182 (233)
T 2f31_A 163 TSIALKVGCLQLINALITPA 182 (233)
T ss_dssp SCHHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHHHCCC
Confidence 44555555555555555543
No 126
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.16 E-value=1.9 Score=45.20 Aligned_cols=283 Identities=11% Similarity=0.063 Sum_probs=157.2
Q ss_pred hHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCC-----ChHHHHHHHHcCCh
Q 043676 60 PQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLL--SSPSDDVREQAVWALGNVAGD-----SPRCRDLVLSQGAL 132 (446)
Q Consensus 60 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L--~~~~~~v~~~a~~~l~~l~~~-----~~~~~~~~~~~~~i 132 (446)
...|.+|-..|.++-. ++ .....+...| .+.++.+|..|+..|.+.... .++.+..+.
T Consensus 27 ~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir----- 91 (1204)
T 3a6p_A 27 QRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK----- 91 (1204)
T ss_dssp HHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-----
Confidence 6778888888877654 22 1333444333 346789999999999988732 233333332
Q ss_pred HHHHHHhccc------cchhHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccC---
Q 043676 133 IPLLAELNEH------AKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADG--- 202 (446)
Q Consensus 133 ~~l~~~l~~~------~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~--- 202 (446)
..++..+... ....++..++.++..++... +. .-.++++.++.++.+ ++..++.++.+|..++..
T Consensus 92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~----~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~ 166 (1204)
T 3a6p_A 92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ----HWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT 166 (1204)
T ss_dssp HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence 2344444222 35678888899999988775 42 235778888888876 556677788888777632
Q ss_pred ----CcHHHHH---HHHh---CcHHHHHHhcCC-------------------CCccchhHHHHHHHHhhcCCchhhHHHH
Q 043676 203 ----TNDKIQA---VIEA---GVCPRLVELLGH-------------------PSPSVLTPALRTVGNIVTGDDFQTQCII 253 (446)
Q Consensus 203 ----~~~~~~~---~~~~---~~~~~l~~ll~~-------------------~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 253 (446)
...+... .+.. .+++.+..++.. .+..+...++.++.+....-+. ..+.
T Consensus 167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~ 244 (1204)
T 3a6p_A 167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHIT 244 (1204)
T ss_dssp SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHH
Confidence 1111111 1111 222333333322 1223555677777666553332 1223
Q ss_pred hcC--ChHHHHHHhccCchHHHHHHHHHHHHHHhcCC--HHHHHHHHHc---CChHHHHHHHh--------cCCcchHHH
Q 043676 254 NHG--AVPYLLDMLVHNHEEIIKKEISWIISNITAGN--REQIQAVIDA---GLIRPIVNLLQ--------NAEFDTKKE 318 (446)
Q Consensus 254 ~~~--~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~--~~~~~~~~~~---~~i~~L~~ll~--------~~~~~v~~~ 318 (446)
+.. +++.+...+.+ +.++..|+.+|..++... ++....++.. ..+..++.... +.+.++.+.
T Consensus 245 ~~~~~ll~~l~~~l~~---~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~ 321 (1204)
T 3a6p_A 245 AENCKLLEILCLLLNE---QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKR 321 (1204)
T ss_dssp TTTSHHHHHHHHGGGC---TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHH
T ss_pred hccchHHHHHHHHcCC---HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHH
Confidence 332 66666666653 478999999999998732 3433323320 11234444432 113455666
Q ss_pred HHHHHHHhccCCCHHHHHHHHH-----------cCChHHHHhcccCCCHHHHHHHHHHHHHHHHh
Q 043676 319 AAWAISNATSGGTQEQIKHLVR-----------EGCVKPLCDLLLCSDPEIVTVCLIGLENILKV 372 (446)
Q Consensus 319 a~~aL~~l~~~~~~~~~~~l~~-----------~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~ 372 (446)
.+..+..+.. . ...+.. .++++.+..+..+++..+...++..-..+++.
T Consensus 322 l~~ll~~lg~----~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 322 LCQVLCALGN----Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHH----H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHH----H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 6666666542 1 111111 12466677777777777777777655555543
No 127
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.77 E-value=3.2 Score=42.72 Aligned_cols=160 Identities=12% Similarity=0.123 Sum_probs=105.2
Q ss_pred chhHHHHHHHHHHHhhc----CCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHH
Q 043676 144 KLSMLRNATRTLSNFCR----GKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRL 219 (446)
Q Consensus 144 ~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l 219 (446)
++.++..++.+++.+.. ..+.........+...+...+...+.+-+..++.+|+|+... ..++.+
T Consensus 408 ~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-----------~~l~~l 476 (1056)
T 1lsh_A 408 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-----------NSIKKI 476 (1056)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-----------GGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-----------hHHHHH
Confidence 45666777777666654 323323333455666666777777888889999999998752 345666
Q ss_pred HHhcCC-----C--CccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhcc-CchHHHHHHHHHHHHHHhcCCHHH
Q 043676 220 VELLGH-----P--SPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVH-NHEEIIKKEISWIISNITAGNREQ 291 (446)
Q Consensus 220 ~~ll~~-----~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~v~~~a~~~l~~l~~~~~~~ 291 (446)
.+++.. . ...++..|+++|..++...+.... +.++.++.+ ..+.++|..|+..|... .-+..
T Consensus 477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRiaA~~~Lm~t-~P~~~- 546 (1056)
T 1lsh_A 477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES-KPSVA- 546 (1056)
T ss_dssp HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT-CCCHH-
T ss_pred HHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHHHHHHHHHH-CcCHH-
Confidence 666642 1 234777899999999876554333 456677632 23789999998888654 22222
Q ss_pred HHHHHHcCChHHHHHHHhc-CCcchHHHHHHHHHHhccCCCH
Q 043676 292 IQAVIDAGLIRPIVNLLQN-AEFDTKKEAAWAISNATSGGTQ 332 (446)
Q Consensus 292 ~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~ 332 (446)
.+..+...+.. .+..|.......|.+++....+
T Consensus 547 --------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 547 --------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp --------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred --------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 34455565654 5778888888888888887655
No 128
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=94.71 E-value=0.2 Score=42.99 Aligned_cols=115 Identities=16% Similarity=0.110 Sum_probs=88.1
Q ss_pred HHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccc
Q 043676 65 EAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAK 144 (446)
Q Consensus 65 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~ 144 (446)
.+...|.-+. +++...+-+++.+++..+...++-++.++.+..+..|...+....-+..- -...++-++..+..+++
T Consensus 262 R~FDLL~LLm-HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~--L~e~LPFi~~~i~~h~e 338 (619)
T 3c2g_A 262 RTFDLLGLLL-HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP--LENILPFLLRLIEIHPD 338 (619)
T ss_dssp HHHHHHHHHC-CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC--CTTHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHh-cccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc--ccccchHHHHHhccCCC
Confidence 3444444444 48888999999999999999999999999999999999888443322111 12346778888878889
Q ss_pred hhHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhc
Q 043676 145 LSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVH 182 (446)
Q Consensus 145 ~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~ 182 (446)
.++.......|+|...+. +..+.....+.++.+...+.
T Consensus 339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 999999999999999887 55566666888888877664
No 129
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=93.16 E-value=1.5 Score=39.17 Aligned_cols=133 Identities=13% Similarity=0.070 Sum_probs=86.3
Q ss_pred CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCc-hh-hHHHH---------
Q 043676 185 DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDD-FQ-TQCII--------- 253 (446)
Q Consensus 185 ~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~-~~-~~~~~--------- 253 (446)
+......++.||..+..........+...+.+..+...+.++.+.++..++..|+.+|.... .. ...++
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~ 150 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 150 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence 46778889999999987766555545555789999999999999999999999988887554 22 22222
Q ss_pred -hcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCC--HHH----HHHHHHcCChHHHHHHHhcCCcchHH
Q 043676 254 -NHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGN--REQ----IQAVIDAGLIRPIVNLLQNAEFDTKK 317 (446)
Q Consensus 254 -~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~--~~~----~~~~~~~~~i~~L~~ll~~~~~~v~~ 317 (446)
+..-+..++..+....+.+.+..++..+..+.... .+. +..+...|+.+.+-.+-..+++.+..
T Consensus 151 ~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~ 221 (386)
T 2bnx_A 151 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKV 221 (386)
T ss_dssp HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred CchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHH
Confidence 22356667888875536677766666666665532 222 23445566666554443334554443
No 130
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=93.08 E-value=4.6 Score=35.95 Aligned_cols=234 Identities=12% Similarity=0.016 Sum_probs=117.9
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676 81 TNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR 160 (446)
Q Consensus 81 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 160 (446)
....++...+..|+.++.++|+.-|...-.+|..+-..-...|..+.. .+-..+.+.+.......-....+.+++.+..
T Consensus 122 ~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsIin 200 (403)
T 3fga_B 122 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIIN 200 (403)
T ss_dssp HTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHHHc
Confidence 344455567888999999999999999988888887555555544433 1223344444222222333456666666665
Q ss_pred CCCCCCh-hhhhhhHHHHHHhhcCCC-HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHH
Q 043676 161 GKPEPPF-DQVRPALPALAQLVHSND-EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV 238 (446)
Q Consensus 161 ~~~~~~~-~~~~~~~~~l~~ll~~~~-~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l 238 (446)
+....-. ....-....|+.+.+... .........|+......++.....+ +..+++.=-..++.-...-+.-+
T Consensus 201 Gfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~El 275 (403)
T 3fga_B 201 GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNEL 275 (403)
T ss_dssp HCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCcHHHHHHHHHH
Confidence 5422211 222233445555555443 2233444455555444444433322 22222221112221112223334
Q ss_pred HHhhcCC-chhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHH---cCChHHHHHHHh----c
Q 043676 239 GNIVTGD-DFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVID---AGLIRPIVNLLQ----N 310 (446)
Q Consensus 239 ~~l~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~---~~~i~~L~~ll~----~ 310 (446)
..+.... +.....+ ...++..+...+.++ +..|.+.|+... .++.. ..++. ..++|.+...+. .
T Consensus 276 e~iLe~~~~~~f~~i-~~~lf~~la~ci~S~-hfqVAErAL~~w-----nNe~i-~~li~~n~~~IlPii~p~L~~~~~~ 347 (403)
T 3fga_B 276 EEILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYW-----NNEYI-MSLISDNAAKILPIMFPSLYRNSKT 347 (403)
T ss_dssp HHHHTTCCHHHHHHH-HHHHHHHHHHHHTCS-CHHHHHHHHGGG-----GCHHH-HHHHHTTHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhCCHHHHHHH-HHHHHHHHHHHHCCC-CHHHHHHHHHHh-----ccHHH-HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4444332 2222222 223567777888888 888887766543 22222 22222 124555555442 2
Q ss_pred C-CcchHHHHHHHHHHhcc
Q 043676 311 A-EFDTKKEAAWAISNATS 328 (446)
Q Consensus 311 ~-~~~v~~~a~~aL~~l~~ 328 (446)
. +..++..+..++.-+..
T Consensus 348 HWn~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 348 HWNKTIHGLIYNALKLFME 366 (403)
T ss_dssp CSCHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHH
Confidence 2 56788778777776654
No 131
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=92.91 E-value=2.8 Score=43.14 Aligned_cols=166 Identities=14% Similarity=0.131 Sum_probs=109.4
Q ss_pred hHHHHHhhCC----CCHHHHHHHHHHHHHhhC----CChHHHHHHHHcCChHHHHHHhc---cccchhHHHHHHHHHHHh
Q 043676 90 VPIFVKLLSS----PSDDVREQAVWALGNVAG----DSPRCRDLVLSQGALIPLLAELN---EHAKLSMLRNATRTLSNF 158 (446)
Q Consensus 90 i~~L~~~L~~----~~~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l 158 (446)
+..+..++.+ .++.++..++.+++.++. ..+.|. ...++.+.+.+. ...+..-+..++.+|+|+
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~-----~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP-----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC-----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCC-----HHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 4556666665 467788888888877762 211111 122444444442 334566778899999999
Q ss_pred hcCCCCCChhhhhhhHHHHHHhhcC-------CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC--CCCcc
Q 043676 159 CRGKPEPPFDQVRPALPALAQLVHS-------NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLG--HPSPS 229 (446)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~ll~~-------~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~--~~~~~ 229 (446)
-.. ..++.+..++.. ....++..|+++|..++...+...+ +.+.++.. ..+++
T Consensus 468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~E 529 (1056)
T 1lsh_A 468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSE 529 (1056)
T ss_dssp TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHH
T ss_pred CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChH
Confidence 653 356777777742 1357888999999999977665444 55667763 46777
Q ss_pred chhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCC
Q 043676 230 VLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGN 288 (446)
Q Consensus 230 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~ 288 (446)
+|..|+..|. ..+|... .+..+...+..+.+..|.......|.+++...
T Consensus 530 vRiaA~~~Lm---~t~P~~~-------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 530 LRIRSCIVFF---ESKPSVA-------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHH---HTCCCHH-------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHH---HHCcCHH-------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 8888887763 2223221 35678888877658899999999999998743
No 132
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=92.80 E-value=0.79 Score=38.71 Aligned_cols=133 Identities=14% Similarity=0.081 Sum_probs=86.9
Q ss_pred chhHHHHHHHHhhcCCchhhHHHH--hcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHH--cCChHHHH
Q 043676 230 VLTPALRTVGNIVTGDDFQTQCII--NHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVID--AGLIRPIV 305 (446)
Q Consensus 230 ~~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~i~~L~ 305 (446)
....|+..|.-++..-.... .++ +...+..|+ +.... ++.+++.|+++++...+.+|.....+.+ ..++..++
T Consensus 44 ~le~aLD~L~ElSHDi~~G~-KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf 120 (315)
T 3qml_C 44 RLEDSFDRIMEFAHDYKHGY-KIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM 120 (315)
T ss_dssp HHHHHHHHHGGGTTSHHHHH-HHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHhhh-HHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence 34567777777775433333 333 223333333 22334 6789999999999999999999888775 34555555
Q ss_pred HHHhc-------CCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCC--CHHHHHHHHHHHHHHHH
Q 043676 306 NLLQN-------AEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCS--DPEIVTVCLIGLENILK 371 (446)
Q Consensus 306 ~ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~~~~~~~~~l~~l~~ 371 (446)
.-+.. ....+++.-+.+|.-+.... . .+ ....+..|.+++... ++.++.+++.++..++.
T Consensus 121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~--~---~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 121 AALSNLNDSNHRSSNILIKRYLSILNELPVTS--E---DL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS--T---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHhcCh--H---hh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 54433 23356677777888887753 1 11 134567777777666 89999999999999886
No 133
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=92.54 E-value=0.27 Score=36.64 Aligned_cols=75 Identities=8% Similarity=0.024 Sum_probs=59.3
Q ss_pred ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhh
Q 043676 300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGE 374 (446)
Q Consensus 300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~ 374 (446)
++..+.+-+.++++.++..|+..|-.+..+++......+....++..+..+++..++.|+..++..+........
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence 455677778888999999999999999888877766666566677777788877889999999999888765433
No 134
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=92.31 E-value=5.3 Score=36.20 Aligned_cols=237 Identities=12% Similarity=0.015 Sum_probs=122.9
Q ss_pred hHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 043676 80 NTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFC 159 (446)
Q Consensus 80 ~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 159 (446)
.....++...+..|+.++.++|+.-|...-.+|..+-..-...|..+... +-..+.+.+.......-....+.+++.+.
T Consensus 154 ~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgSIi 232 (449)
T 2npp_B 154 IAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSII 232 (449)
T ss_dssp TGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHHHH
T ss_pred hhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHHHH
Confidence 34455566678899999999999999998888887765444444444331 22344555533333344456777777777
Q ss_pred cCCCCC-ChhhhhhhHHHHHHhhcCCC-HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHH
Q 043676 160 RGKPEP-PFDQVRPALPALAQLVHSND-EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRT 237 (446)
Q Consensus 160 ~~~~~~-~~~~~~~~~~~l~~ll~~~~-~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~ 237 (446)
.+.... ......-....|+.+.+... .........|+......++..... ++..|++.=-..+..-...-+.-
T Consensus 233 nGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~e 307 (449)
T 2npp_B 233 NGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNE 307 (449)
T ss_dssp SSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTCCSSCHHHHHHHHHH
T ss_pred hccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhCCCCCchHHHHHHHH
Confidence 765222 12222333455555655443 223334445555544444443332 22222222111222111223333
Q ss_pred HHHhhcCC-chhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHH--cCChHHHHHHHhc----
Q 043676 238 VGNIVTGD-DFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVID--AGLIRPIVNLLQN---- 310 (446)
Q Consensus 238 l~~l~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~---- 310 (446)
+..+.... +.....+ ...++..+...+.++ +..|.+.|+... .++.....+.+ ..++|.+...+..
T Consensus 308 leeile~~~~~ef~~i-~~~lF~~la~ci~S~-hfqVAErAL~~w-----~N~~i~~li~~n~~~IlPii~p~L~~~s~~ 380 (449)
T 2npp_B 308 LEEILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYW-----NNEYIMSLISDNAAKILPIMFPSLYRNSKT 380 (449)
T ss_dssp HHHHHTTCCHHHHHHH-HHHHHHHHHHHHTCS-CHHHHHHHHGGG-----GCHHHHHHHHTTHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHhCCHHHHHHH-HHHHHHHHHHHHcCC-CHHHHHHHHHHH-----CCHHHHHHHHhchhhhHHhhHHHHHHHHHH
Confidence 44444322 2222222 223667777888888 888888776433 22322222221 1245666665532
Q ss_pred C-CcchHHHHHHHHHHhccC
Q 043676 311 A-EFDTKKEAAWAISNATSG 329 (446)
Q Consensus 311 ~-~~~v~~~a~~aL~~l~~~ 329 (446)
. +..++..+..++.-+...
T Consensus 381 HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 381 HWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp CSSTTHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHHHHH
Confidence 1 457888888777766543
No 135
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=92.15 E-value=0.53 Score=36.10 Aligned_cols=73 Identities=11% Similarity=0.086 Sum_probs=57.4
Q ss_pred ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcC-CCHHHHHHHHHHH
Q 043676 343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSH-DNNEIHEKSVKIF 421 (446)
Q Consensus 343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~~l 421 (446)
++..|..-+.++++.++..|+..|..+++.+... |...+....+++.+..+... .++.|+++...++
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~------------Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li 120 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKI------------FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLM 120 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH------------HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH------------HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 3455666677889999999999999999987664 56677777778887777765 6789999999999
Q ss_pred HHhcCC
Q 043676 422 KTYWCG 427 (446)
Q Consensus 422 ~~~~~~ 427 (446)
+.+...
T Consensus 121 ~~W~~~ 126 (163)
T 1x5b_A 121 VEWSEE 126 (163)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887543
No 136
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=92.07 E-value=0.78 Score=33.88 Aligned_cols=79 Identities=9% Similarity=0.131 Sum_probs=55.3
Q ss_pred ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHh-ChHHHHHHhhcCCC--------HHH
Q 043676 343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEA-GGLEKIENLQSHDN--------NEI 413 (446)
Q Consensus 343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~l~~l~~~~~--------~~v 413 (446)
+++.|.+-|.+.++.+..+++.+|..++..+... |...+++. ..++.+.++...++ ..|
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~------------f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~V 117 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE------------FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAV 117 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH------------HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH------------HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHH
Confidence 4667778888889999999999999998776543 44444433 23333443433322 568
Q ss_pred HHHHHHHHHHhcCCCCCccc
Q 043676 414 HEKSVKIFKTYWCGRNEEED 433 (446)
Q Consensus 414 ~~~a~~~l~~~~~~~~~~~~ 433 (446)
+..|.++++-+|+++.....
T Consensus 118 R~~AkEl~~ll~d~~~~~~~ 137 (140)
T 1vdy_A 118 RETAHETISAIFSEENGSGP 137 (140)
T ss_dssp HHHHHHHHHHHTCCSSCCCC
T ss_pred HHHHHHHHHHHhCcCCCCCC
Confidence 99999999999988876443
No 137
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=91.91 E-value=1.9 Score=36.45 Aligned_cols=152 Identities=12% Similarity=0.105 Sum_probs=98.3
Q ss_pred hhhHHHHHHhhcCC------CHhHHHHHHHHHHHhccCCcHHHHHHH-HhCcHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676 171 RPALPALAQLVHSN------DEDVLTYACWSLSYLADGTNDKIQAVI-EAGVCPRLVELLGHPSPSVLTPALRTVGNIVT 243 (446)
Q Consensus 171 ~~~~~~l~~ll~~~------~~~v~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~ 243 (446)
+.-+..+..+++++ +..-...++..|..++.......+..- +..++..|+ +.....+.+++.|..+|+...+
T Consensus 21 s~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLR 99 (315)
T 3qml_C 21 SSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLR 99 (315)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHc
Confidence 34445555666655 455678888888888876554444333 334555555 3344566789999999999999
Q ss_pred CCchhhHHHHhc--CChHHHHHHhcc----C--chHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--Cc
Q 043676 244 GDDFQTQCIINH--GAVPYLLDMLVH----N--HEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA--EF 313 (446)
Q Consensus 244 ~~~~~~~~~~~~--~~~~~l~~~l~~----~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~ 313 (446)
.+|.....+.+. .++..+..-|.. + ....+.+.-+.+|.-|...+.. + ....+..|.+++... ++
T Consensus 100 NNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~ 174 (315)
T 3qml_C 100 NNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDK 174 (315)
T ss_dssp TCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCH
T ss_pred cCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCH
Confidence 999888877642 344444433322 1 1335667777788888665421 1 134667788888776 88
Q ss_pred chHHHHHHHHHHhcc
Q 043676 314 DTKKEAAWAISNATS 328 (446)
Q Consensus 314 ~v~~~a~~aL~~l~~ 328 (446)
.++..++..+..+..
T Consensus 175 ~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 175 QLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc
Confidence 999999999988763
No 138
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=91.57 E-value=0.37 Score=36.27 Aligned_cols=75 Identities=8% Similarity=-0.064 Sum_probs=61.2
Q ss_pred ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC------CCHHHHHHHHHHHHHHHHhh
Q 043676 300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC------SDPEIVTVCLIGLENILKVG 373 (446)
Q Consensus 300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~~~~~~~~~l~~l~~~~ 373 (446)
.+..+.+-+.+.++.++..|+..|-.+..++.......+....++..|+.++.. .++.|+..++..+.......
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 455677778889999999999999999998888877777777788888888863 57889999999998877644
Q ss_pred h
Q 043676 374 E 374 (446)
Q Consensus 374 ~ 374 (446)
.
T Consensus 129 ~ 129 (149)
T 3g2s_A 129 P 129 (149)
T ss_dssp T
T ss_pred C
Confidence 3
No 139
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=91.44 E-value=0.5 Score=35.23 Aligned_cols=73 Identities=12% Similarity=0.140 Sum_probs=57.4
Q ss_pred ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHH
Q 043676 343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFK 422 (446)
Q Consensus 343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~ 422 (446)
++..|..-+.++++.++..|+..|..+++.++.. |...+....+++.+..+....++.|+++...++.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~------------f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~ 110 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI------------FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMV 110 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------------HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 3555666677889999999999999999887664 5666666667777777777788999999999998
Q ss_pred HhcCC
Q 043676 423 TYWCG 427 (446)
Q Consensus 423 ~~~~~ 427 (446)
.+...
T Consensus 111 ~W~~~ 115 (140)
T 3ldz_A 111 EWTDE 115 (140)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87543
No 140
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=91.33 E-value=5.6 Score=33.06 Aligned_cols=89 Identities=10% Similarity=0.079 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHh
Q 043676 17 SLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKL 96 (446)
Q Consensus 17 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~ 96 (446)
..+...+.....++... ++. +. ..+++.++.+..+++ .++|...+..+...+...++.... .++.|..+
T Consensus 30 ~~kl~~L~qa~el~~~~-dp~---ll-~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~~-----~l~~L~~L 98 (257)
T 3gs3_A 30 STKCELLAKVQETVLGS-CAE---LA-EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLPH-----VINVVSML 98 (257)
T ss_dssp HHHHHHHHHHHHHHTTT-TGG---GH-HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcc-CHh---HH-HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 67888888888876653 221 12 246777778766666 899999999988888644443333 46788888
Q ss_pred hCCCCHHHHHHHHHHHHHhh
Q 043676 97 LSSPSDDVREQAVWALGNVA 116 (446)
Q Consensus 97 L~~~~~~v~~~a~~~l~~l~ 116 (446)
++++++.+...++.+..++.
T Consensus 99 l~d~d~~V~K~~I~~~~~iY 118 (257)
T 3gs3_A 99 LRDNSAQVIKRVIQACGSIY 118 (257)
T ss_dssp TTCSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHH
Confidence 88888888888887776664
No 141
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=91.22 E-value=0.89 Score=35.17 Aligned_cols=72 Identities=14% Similarity=0.130 Sum_probs=57.8
Q ss_pred ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhc------CCCHHHHHH
Q 043676 343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQS------HDNNEIHEK 416 (446)
Q Consensus 343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~------~~~~~v~~~ 416 (446)
++..|.+-+.+.++.++..++..|..+++.+... |...+....+++.|..+.. ..+..|+++
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~------------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 118 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR------------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTK 118 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence 3556667778899999999999999999987764 6777877888888888875 246889999
Q ss_pred HHHHHHHhcC
Q 043676 417 SVKIFKTYWC 426 (446)
Q Consensus 417 a~~~l~~~~~ 426 (446)
+..+++.+..
T Consensus 119 il~li~~W~~ 128 (171)
T 1juq_A 119 VIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987743
No 142
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=90.96 E-value=0.88 Score=34.22 Aligned_cols=73 Identities=11% Similarity=0.073 Sum_probs=58.5
Q ss_pred ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcC------CCHHHHHH
Q 043676 343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSH------DNNEIHEK 416 (446)
Q Consensus 343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~------~~~~v~~~ 416 (446)
++..|..-+.++++.++..|+..|..+++.+... |...+....+++.|..+... .++.|+++
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~------------fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 106 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK------------FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGR 106 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------------HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHH
Confidence 3555666677899999999999999999987664 67788878888888888753 47899999
Q ss_pred HHHHHHHhcCC
Q 043676 417 SVKIFKTYWCG 427 (446)
Q Consensus 417 a~~~l~~~~~~ 427 (446)
...++..+...
T Consensus 107 il~li~~W~~~ 117 (148)
T 1mhq_A 107 VIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887543
No 143
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=90.57 E-value=0.79 Score=34.48 Aligned_cols=73 Identities=7% Similarity=-0.085 Sum_probs=60.1
Q ss_pred ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC------CCHHHHHHHHHHHHHHHHh
Q 043676 300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC------SDPEIVTVCLIGLENILKV 372 (446)
Q Consensus 300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~~~~~~~~~l~~l~~~ 372 (446)
++..+.+-++++++.++..|+..|-.+..+++......+....++..|..++.. .++.|+..++..+......
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 455677777889999999999999999998888877777777888889988864 4778999999888876654
No 144
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=90.44 E-value=0.96 Score=34.02 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=59.2
Q ss_pred ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhc------CCCHHHHHH
Q 043676 343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQS------HDNNEIHEK 416 (446)
Q Consensus 343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~------~~~~~v~~~ 416 (446)
++..|..-+.+.++.++..++..|..+++.+... |...+....+++.|..+.. ..+++|+++
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~------------fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 116 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR------------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNK 116 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH------------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHH
Confidence 3555666677899999999999999999987765 6777777788888888875 357899999
Q ss_pred HHHHHHHhcCCC
Q 043676 417 SVKIFKTYWCGR 428 (446)
Q Consensus 417 a~~~l~~~~~~~ 428 (446)
...++..+...-
T Consensus 117 il~li~~W~~~f 128 (149)
T 3g2s_A 117 ILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999885433
No 145
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=90.06 E-value=0.54 Score=36.08 Aligned_cols=73 Identities=4% Similarity=-0.014 Sum_probs=57.8
Q ss_pred ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC-CCHHHHHHHHHHHHHHHHh
Q 043676 300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC-SDPEIVTVCLIGLENILKV 372 (446)
Q Consensus 300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~~~~~l~~l~~~ 372 (446)
++..+.+-+.++++.++..|+..|-.+..++.......+....++..|..++.. .++.|+..++..+......
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 455677778889999999999999999998887777666666677778777765 5688999998888776543
No 146
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=90.02 E-value=4.8 Score=35.70 Aligned_cols=108 Identities=14% Similarity=0.166 Sum_probs=78.4
Q ss_pred cCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHH
Q 043676 255 HGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQ 334 (446)
Q Consensus 255 ~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~ 334 (446)
.++++.++.+-.+. +.++|+..+..|...+....+. +. .+++.|..++.+.++.+.+.++.+.+++.. ..
T Consensus 62 ~~fl~~il~f~~d~-~~~vRk~~a~FieEa~~~~~el---~~--~~l~~L~~LL~d~d~~V~K~~I~~~tslYp----l~ 131 (386)
T 3o2t_A 62 DNFLDEIIAFQADK-SIEVRKFVIGFIEEACKRDIEL---LL--KLIANLNMLLRDENVNVVKKAILTMTQLYK----VA 131 (386)
T ss_dssp GGGHHHHHGGGGCS-CHHHHHHHHHHHHHHHHHCGGG---HH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHHHHHHhccCC-cHHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH----HH
Confidence 35788899888888 8999999999998887533332 22 367788888888899999999988888742 22
Q ss_pred HHHHHHcC---------------ChHHHHhcccCCCHHHHHHHHHHHHHHHHh
Q 043676 335 IKHLVREG---------------CVKPLCDLLLCSDPEIVTVCLIGLENILKV 372 (446)
Q Consensus 335 ~~~l~~~~---------------~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~ 372 (446)
.+++...+ +-..++.++++.+..++..|++.+..++-.
T Consensus 132 f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~ 184 (386)
T 3o2t_A 132 LQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVT 184 (386)
T ss_dssp HHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 22222222 234466677888999999999999998753
No 147
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=88.64 E-value=0.86 Score=35.26 Aligned_cols=73 Identities=8% Similarity=-0.015 Sum_probs=58.6
Q ss_pred ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC------CCHHHHHHHHHHHHHHHHh
Q 043676 300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC------SDPEIVTVCLIGLENILKV 372 (446)
Q Consensus 300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~~~~~~~~~l~~l~~~ 372 (446)
++..|.+-++++++.++..|+..|-.+..++.......+....++..|+.++.. .++.|+.+++..+......
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 456677778889999999999999999988777776666777778888888752 4678999999988886643
No 148
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=88.59 E-value=9.6 Score=31.66 Aligned_cols=131 Identities=14% Similarity=0.112 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC
Q 043676 146 SMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH 225 (446)
Q Consensus 146 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~ 225 (446)
+.+-..+.-...+..+.. ......+++.++.+..+.+.++|..+...+...+...++... ..++.|..++.+
T Consensus 30 ~~kl~~L~qa~el~~~~d---p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll~d 101 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSC---AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLLRD 101 (257)
T ss_dssp HHHHHHHHHHHHHHTTTT---GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHccC---HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcC
Confidence 455555666666555531 235678888888887778899999999999888855554333 567788888888
Q ss_pred CCccchhHHHHHHHHhhc-------CCch---hhHHHHh--cCChHHHHHHhccCchHHHHHHHHHHHHHHh
Q 043676 226 PSPSVLTPALRTVGNIVT-------GDDF---QTQCIIN--HGAVPYLLDMLVHNHEEIIKKEISWIISNIT 285 (446)
Q Consensus 226 ~~~~~~~~a~~~l~~l~~-------~~~~---~~~~~~~--~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~ 285 (446)
+++.+.+.+..+.+++-. .++. .....++ ..+-..++.++.+. +..+|..++..+..+.
T Consensus 102 ~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~-n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 102 NSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNE-NDGIRTNAIKFLEGVV 172 (257)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSS-CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccC-CcchHHHHHHHHHHHH
Confidence 888888887776665521 1111 1111111 12233455555555 6666666666555543
No 149
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=87.30 E-value=15 Score=32.52 Aligned_cols=89 Identities=9% Similarity=0.115 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHh
Q 043676 17 SLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKL 96 (446)
Q Consensus 17 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~ 96 (446)
..+...+..+.+++... ++. .-.++++.++.+-.+++ .++|...+..|...+....+... .+++.|..+
T Consensus 40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~L 108 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNML 108 (386)
T ss_dssp THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 35777777777765542 221 22468888998888888 89999999988888764444432 246788888
Q ss_pred hCCCCHHHHHHHHHHHHHhh
Q 043676 97 LSSPSDDVREQAVWALGNVA 116 (446)
Q Consensus 97 L~~~~~~v~~~a~~~l~~l~ 116 (446)
|++.++.+...++.+..++.
T Consensus 109 L~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 109 LRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp HTCSSHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHH
Confidence 88888888888888777764
No 150
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=84.56 E-value=16 Score=33.10 Aligned_cols=227 Identities=13% Similarity=0.062 Sum_probs=118.9
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCC-----h
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGT-----S 78 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-----~ 78 (446)
+..|+..+.|+|+..|..--..|..+-.. -...+..+...+-..+.+.+-......-....+.+++.+..+- +
T Consensus 164 i~~Ll~lfdSeDpRERd~LktiLhrIY~K--f~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKe 241 (449)
T 2npp_B 164 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 241 (449)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHS--CTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcH
Confidence 44678888899998888888788765443 2333444444444556666544332344456777888877642 3
Q ss_pred hhHHHHHhcCChHHHHHhhCCCCHH-HHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHH
Q 043676 79 ENTNVVIDHGAVPIFVKLLSSPSDD-VREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSN 157 (446)
Q Consensus 79 ~~~~~~~~~~~i~~L~~~L~~~~~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 157 (446)
+++..+ ...|+.+.+...-. ....-..++..++..++.....+ +..+++.- -.++..-...-+.-+..
T Consensus 242 ehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~W-P~tns~KevlFL~elee 310 (449)
T 2npp_B 242 EHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYW-PKTHSPKEVMFLNELEE 310 (449)
T ss_dssp HHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTC-CSSCHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhC-CCCCchHHHHHHHHHHH
Confidence 444333 34455555543321 12233344444444444433322 23344433 12222222223333344
Q ss_pred hhcCCCCCChh-hhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHh---CcHHHHHHhcCC-----CCc
Q 043676 158 FCRGKPEPPFD-QVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEA---GVCPRLVELLGH-----PSP 228 (446)
Q Consensus 158 l~~~~~~~~~~-~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~~l~~ll~~-----~~~ 228 (446)
+...-+..... ....+...+..++.+.+..|.+.|+....| +... .++.. .++|.+...+.. =+.
T Consensus 311 ile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N-----~~i~-~li~~n~~~IlPii~p~L~~~s~~HWn~ 384 (449)
T 2npp_B 311 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN-----EYIM-SLISDNAAKILPIMFPSLYRNSKTHWNK 384 (449)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHHH-HHHHTTHHHHHHHHHHHHTSCTTCCSST
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCC-----HHHH-HHHHhchhhhHHhhHHHHHHHHHHhcCH
Confidence 44332221221 224566677778888899999988755432 2112 22221 345666665533 145
Q ss_pred cchhHHHHHHHHhhcCCchhh
Q 043676 229 SVLTPALRTVGNIVTGDDFQT 249 (446)
Q Consensus 229 ~~~~~a~~~l~~l~~~~~~~~ 249 (446)
.++..+..++..+...++...
T Consensus 385 ~V~~la~~vlk~l~e~d~~lf 405 (449)
T 2npp_B 385 TIHGLIYNALKLFMEMNQKLF 405 (449)
T ss_dssp THHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHH
Confidence 688888888887777666543
No 151
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=83.68 E-value=1.9 Score=35.21 Aligned_cols=71 Identities=13% Similarity=0.191 Sum_probs=54.1
Q ss_pred hHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhc-CCCHHHHHHHHHHHH
Q 043676 344 VKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQS-HDNNEIHEKSVKIFK 422 (446)
Q Consensus 344 i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~~l~ 422 (446)
+..|..-+.+.++.++..|+..|..+++.+... |...+....+++.|..+.. ..+++|+++...++.
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~------------f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~ 114 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQT------------VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQ 114 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHH------------HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchH------------HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 455666677899999999999999999987764 4566666666777766653 457889999999888
Q ss_pred HhcC
Q 043676 423 TYWC 426 (446)
Q Consensus 423 ~~~~ 426 (446)
.+..
T Consensus 115 ~W~~ 118 (226)
T 3zyq_A 115 AWAH 118 (226)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7743
No 152
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=82.27 E-value=4.4 Score=32.83 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=53.0
Q ss_pred hHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhc-CCCHHHHHHHHHHHH
Q 043676 344 VKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQS-HDNNEIHEKSVKIFK 422 (446)
Q Consensus 344 i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~~l~ 422 (446)
+..|..-|.++++.++..++..|..++..+... |...+.....++.+..+.. ..+.+|++++..+++
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~------------f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~ 111 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP------------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQ 111 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH------------HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 444555667889999999999999999987654 4566666666777666654 457889999888888
Q ss_pred HhcC
Q 043676 423 TYWC 426 (446)
Q Consensus 423 ~~~~ 426 (446)
.+..
T Consensus 112 ~W~~ 115 (220)
T 1dvp_A 112 TWAY 115 (220)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7743
No 153
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=81.90 E-value=18 Score=32.11 Aligned_cols=191 Identities=12% Similarity=0.026 Sum_probs=96.4
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676 81 TNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR 160 (446)
Q Consensus 81 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 160 (446)
....++...+..|+.++.++|+.-|...-.+|..+-..-...|..+.+ .+-..+.+.+.......-....+.+++.+..
T Consensus 167 ~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fiye~e~~~GIaeLLeilgsIIn 245 (392)
T 2jak_A 167 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIIN 245 (392)
T ss_dssp HTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHH
T ss_pred hhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCHHHHHHHHHHHHh
Confidence 344455567888999999999999999888887776544444544433 1233455555333334444567777777776
Q ss_pred CCCCCC-hhhhhhhHHHHHHhhcCCC-HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHH
Q 043676 161 GKPEPP-FDQVRPALPALAQLVHSND-EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV 238 (446)
Q Consensus 161 ~~~~~~-~~~~~~~~~~l~~ll~~~~-~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l 238 (446)
+....- .....-....++.+.+... .........|+......++.....+ +..+++.=-..+..-...-+.-+
T Consensus 246 gfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~el 320 (392)
T 2jak_A 246 GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNEL 320 (392)
T ss_dssp TCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSSCSSCCTTHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhCCCCCchHHHHHHHHH
Confidence 652221 1222233455555555432 2223334444444444444333322 22222221112221122223334
Q ss_pred HHhhcCC-chhhHHHHhcCChHHHHHHhccCchHHHHHHHHH
Q 043676 239 GNIVTGD-DFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISW 279 (446)
Q Consensus 239 ~~l~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~ 279 (446)
..+.... +.....+ ...++..+...+.++ +..|.+.|+.
T Consensus 321 eeiLe~~~~~~f~~i-~~~lF~~la~ci~S~-hfqVAErAL~ 360 (392)
T 2jak_A 321 EEILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALY 360 (392)
T ss_dssp HHHHHTCCHHHHHHH-HHHHHHHHHHHHTCS-SHHHHHHHHG
T ss_pred HHHHHhCCHHHHHHH-HHHHHHHHHHHHcCC-cHHHHHHHHH
Confidence 4443322 2222222 223566677777777 7777776654
No 154
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=80.77 E-value=30 Score=30.76 Aligned_cols=228 Identities=11% Similarity=0.100 Sum_probs=118.4
Q ss_pred hhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHHhhcCCc---
Q 043676 171 RPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGNIVTGDD--- 246 (446)
Q Consensus 171 ~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~--- 246 (446)
..++-.|+.++.+.|+.=|...-.++..+-..-.... .++...+-..+.+.+.. ....-....+.+++.+..+-.
T Consensus 128 ~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R-~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PL 206 (403)
T 3fga_B 128 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLR-AYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL 206 (403)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCc
Confidence 4577889999999999999888888877654333222 22222233344444333 223334566777777765431
Q ss_pred -hhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc---CCcchHHHHHHH
Q 043676 247 -FQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN---AEFDTKKEAAWA 322 (446)
Q Consensus 247 -~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---~~~~v~~~a~~a 322 (446)
+.-..+ +...|+.+-+...-......-..++..+...++.... +.+..+++. .++.-...-+.-
T Consensus 207 keehk~f----l~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~--------~vi~~LLk~WP~tns~KevlFL~E 274 (403)
T 3fga_B 207 KEEHKIF----LLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTE--------PVVMALLKYWPKTHSPKEVMFLNE 274 (403)
T ss_dssp CHHHHHH----HHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHH--------HHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred hHHHHHH----HHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHH--------HHHHHHHHhCCCCCcHHHHHHHHH
Confidence 111111 1223333433331222223334444444443333222 122223332 233323333444
Q ss_pred HHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHH-----HHHhhhhhhcccCCCCccchHHHHHHHhC
Q 043676 323 ISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLEN-----ILKVGEAERNMGTTIGDVNQYAQFVEEAG 397 (446)
Q Consensus 323 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~-----l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 397 (446)
+..+....++.....+.. .....+..++.+++-.|.+.|+....+ ++...... ....+
T Consensus 275 le~iLe~~~~~~f~~i~~-~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~------------IlPii---- 337 (403)
T 3fga_B 275 LEEILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAK------------ILPIM---- 337 (403)
T ss_dssp HHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHH------------HHHHH----
T ss_pred HHHHHHhCCHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHH------------HHHHH----
Confidence 455665556665555332 257778888899999999888755422 22111100 11111
Q ss_pred hHHHHHH-hhcCCCHHHHHHHHHHHHHhcCCCC
Q 043676 398 GLEKIEN-LQSHDNNEIHEKSVKIFKTYWCGRN 429 (446)
Q Consensus 398 ~~~~l~~-l~~~~~~~v~~~a~~~l~~~~~~~~ 429 (446)
.+.|.+ ..+|-|+.++..+..++..+.+-+.
T Consensus 338 -~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~ 369 (403)
T 3fga_B 338 -FPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQ 369 (403)
T ss_dssp -HHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSC
T ss_pred -HHHHHHHHHHccCHHHHHHHHHHHHHHHHhCH
Confidence 333433 4678899999999999988766543
No 155
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=80.75 E-value=5.4 Score=30.25 Aligned_cols=71 Identities=13% Similarity=0.169 Sum_probs=53.0
Q ss_pred hHHHHhccc-CCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHH-HHHhhc---CCCHHHHHHHH
Q 043676 344 VKPLCDLLL-CSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEK-IENLQS---HDNNEIHEKSV 418 (446)
Q Consensus 344 i~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~l~~---~~~~~v~~~a~ 418 (446)
+..|..-+. .+++.++..|+..|..+++.+... |...+.....++. +..+.. .+...|++++.
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~------------fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil 122 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHR------------FHVLVASQDFVESVLVRTILPKNNPPTIVHDKVL 122 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHH------------HHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHH------------HHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHH
Confidence 445555565 578999999999999999987654 5677777777777 666653 24568999999
Q ss_pred HHHHHhcC
Q 043676 419 KIFKTYWC 426 (446)
Q Consensus 419 ~~l~~~~~ 426 (446)
.++..+..
T Consensus 123 ~li~~W~~ 130 (157)
T 1elk_A 123 NLIQSWAD 130 (157)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 156
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=80.71 E-value=0.79 Score=37.44 Aligned_cols=73 Identities=10% Similarity=0.112 Sum_probs=53.9
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcC
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIAS 75 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 75 (446)
++..|.+.|++.++.+++.|+..|-.+...-+.....++....++..|.+++.....+.++..++..+...+.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 3567788889999999999999888776654334455666667777787777654447888888888877654
No 157
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=75.81 E-value=5.9 Score=30.04 Aligned_cols=73 Identities=11% Similarity=0.076 Sum_probs=55.6
Q ss_pred ChHHHHHHHh-cCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHH-HHhcccC---CCHHHHHHHHHHHHHHHHh
Q 043676 300 LIRPIVNLLQ-NAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKP-LCDLLLC---SDPEIVTVCLIGLENILKV 372 (446)
Q Consensus 300 ~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~-L~~ll~~---~~~~~~~~~~~~l~~l~~~ 372 (446)
++..+.+-++ ++++.++..|+..|-.+..++.+.....+....++.. |+.++.. ++..|+.+++..+......
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 4556667776 4788999999999999999888777777776677776 6777742 3458999999888887654
No 158
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=74.72 E-value=1.8 Score=35.19 Aligned_cols=73 Identities=14% Similarity=0.085 Sum_probs=51.8
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcC
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIAS 75 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 75 (446)
++..|.+.|++.++.++..|+..|-.+...-+.....++....++..|+.++.+..++.++..++..+...+.
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3456777888999999999998888776653233345566666777888877654447888888877766553
No 159
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=70.35 E-value=27 Score=35.60 Aligned_cols=216 Identities=13% Similarity=0.079 Sum_probs=116.3
Q ss_pred hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc----CCCHhHHHHHHHHHH-----HhccC
Q 043676 132 LIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH----SNDEDVLTYACWSLS-----YLADG 202 (446)
Q Consensus 132 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~----~~~~~v~~~~~~~l~-----~l~~~ 202 (446)
+..++.+- .+.-.+++..|-.+|......-+.... -++|.+++.|+ ..+.+-.+-++.+|. ..+..
T Consensus 135 l~dL~~Ls-~S~Y~~VR~~AQ~~L~~~~~~~~gs~~----~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~ 209 (997)
T 1vsy_5 135 LVDIIQLA-TSLYPDIYKPAQGTLVHCMKQLVGSYG----VVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMT 209 (997)
T ss_dssp HHHHHHHH-TSSCHHHHHHHHHHHHHHHTTBTTHHH----HHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGG
T ss_pred HHHHHHHh-cCchHHHHHHHHHHHHHHHHhcccHHH----HHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhc
Confidence 44555544 667789999999999988776544333 34455555554 456666667776654 22222
Q ss_pred CcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCc--hhhHHHHhcCChHHHHHHhccCchHHHHHHHHHH
Q 043676 203 TNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDD--FQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWI 280 (446)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~ 280 (446)
+.... ..+++.|++....+++.++..+-.+...+..... ... ..++...+ .-+..+ +..+- .+...
T Consensus 210 d~~~~-----~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~-~~~~~~~~----~~i~~~-d~~i~-~~~~~ 277 (997)
T 1vsy_5 210 DYKDI-----GRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSV-CVISDQAF----LPLAPP-DGTIN-LQVEA 277 (997)
T ss_dssp CHHHH-----HHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSC-CCCCGGGT----GGGCCS-CSSTT-SHHHH
T ss_pred ChHHH-----HHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHH-HHHHHHHH----hccCCC-cHHHH-HHHHH
Confidence 22222 2566778888777888888776666555543211 100 01111111 122222 21111 11111
Q ss_pred HHHHhcCCHHHHHHHHH--cCChHHHHHHHhc-CC--cchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCC
Q 043676 281 ISNITAGNREQIQAVID--AGLIRPIVNLLQN-AE--FDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSD 355 (446)
Q Consensus 281 l~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~-~~--~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 355 (446)
..... ...+....+ .++...+++..++ .+ ......++..+.++...-+... ...++..+.+.+.++.
T Consensus 278 ~~~~~---~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~~-----~~~~v~~~~~~l~~dh 349 (997)
T 1vsy_5 278 VKLAK---KKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESKP-----DKRAVFSIISQISTKH 349 (997)
T ss_dssp HHHHT---THHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCCC-----CHHHHHHHHGGGGGCC
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCCC-----CHHHHHHHHHhhcCCC
Confidence 21111 111111111 2455556666633 36 7888888888666654321110 1113566778888999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 043676 356 PEIVTVCLIGLENILKV 372 (446)
Q Consensus 356 ~~~~~~~~~~l~~l~~~ 372 (446)
|.++..++.++..++..
T Consensus 350 p~~R~~a~~~l~~il~~ 366 (997)
T 1vsy_5 350 PEIIHLVVKSLLSTCNK 366 (997)
T ss_dssp HHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998887765
No 160
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=69.60 E-value=18 Score=36.87 Aligned_cols=186 Identities=13% Similarity=0.092 Sum_probs=107.5
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc---ccchhHHHHHHHHHH--HhhcCCCC
Q 043676 90 VPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE---HAKLSMLRNATRTLS--NFCRGKPE 164 (446)
Q Consensus 90 i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---~~~~~~~~~a~~~L~--~l~~~~~~ 164 (446)
+.-|+++--+...+||..|-.+|......-+..+..+ ++.+++.|.. +.+.+-..-|+++|. .+... -.
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~-~~ 208 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK-LM 208 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH-GG
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH-Hh
Confidence 4566666667889999999999999886655555443 5778887754 344455555665544 11110 12
Q ss_pred CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC-------------------c-----HHHHH----------H
Q 043676 165 PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGT-------------------N-----DKIQA----------V 210 (446)
Q Consensus 165 ~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~-------------------~-----~~~~~----------~ 210 (446)
........+++.++.....+.+.++..+-.+...+.... + ..... .
T Consensus 209 ~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~ 288 (997)
T 1vsy_5 209 TDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREY 288 (997)
T ss_dssp GCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHH
T ss_pred cChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 234455666777777766666666555544433332100 0 00000 0
Q ss_pred HH---hCcHHHHHHhc-CCCC--ccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHH
Q 043676 211 IE---AGVCPRLVELL-GHPS--PSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNI 284 (446)
Q Consensus 211 ~~---~~~~~~l~~ll-~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l 284 (446)
+. .++...++... .+.. +.....++..+.++....+. .....++..+++.+.++ .+.+|..|..++..+
T Consensus 289 ~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~----~~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~~i 363 (997)
T 1vsy_5 289 YLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES----KPDKRAVFSIISQISTK-HPEIIHLVVKSLLST 363 (997)
T ss_dssp HHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC----CCCHHHHHHHHGGGGGC-CHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHHH
Confidence 11 13344444555 3345 77777777776666533221 11223567788888888 899999999888766
Q ss_pred hc
Q 043676 285 TA 286 (446)
Q Consensus 285 ~~ 286 (446)
..
T Consensus 364 l~ 365 (997)
T 1vsy_5 364 CN 365 (997)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 161
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=67.37 E-value=11 Score=27.81 Aligned_cols=74 Identities=18% Similarity=0.125 Sum_probs=52.0
Q ss_pred ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcC-ChHHHHhcccCCC--------HHHHHHHHHHHHHHH
Q 043676 300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREG-CVKPLCDLLLCSD--------PEIVTVCLIGLENIL 370 (446)
Q Consensus 300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~-~i~~L~~ll~~~~--------~~~~~~~~~~l~~l~ 370 (446)
+++.|.+-++++++.++.+|+..|..++..+++.....+...- .|..+.++-.-++ ..|+..|-+++.-++
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 6677888888889999999999999999999888877765532 1233332221112 358888888887766
Q ss_pred Hhh
Q 043676 371 KVG 373 (446)
Q Consensus 371 ~~~ 373 (446)
...
T Consensus 130 d~~ 132 (140)
T 1vdy_A 130 SEE 132 (140)
T ss_dssp CCS
T ss_pred CcC
Confidence 543
No 162
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=65.56 E-value=15 Score=26.69 Aligned_cols=95 Identities=16% Similarity=0.125 Sum_probs=61.5
Q ss_pred ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcc
Q 043676 300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNM 379 (446)
Q Consensus 300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 379 (446)
+++.|+..+++-+..+...++..|...- .. .++.+.+.+.++|..=. .++|..++..-+..
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~~----~~---------l~p~I~~vl~s~D~~W~---ywil~~lv~~~~~~--- 92 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLHQ----SI---------AMPHILTILQGNDIMWK---YWVIKLMIPYLIYP--- 92 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHTH----HH---------HHHHHHHHHHSSCHHHH---HHHHHHHGGGCCHH---
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHcc----Hh---------hHHHHHHHHHcCChHHH---HHHHHHHHHcCCHH---
Confidence 6788999999999999888888777642 12 34556666677776544 34554444322221
Q ss_pred cCCCCccchHHHHHHHhChHHHHHHhhcCC-----CHHHHHHHHHHHHHhcCC
Q 043676 380 GTTIGDVNQYAQFVEEAGGLEKIENLQSHD-----NNEIHEKSVKIFKTYWCG 427 (446)
Q Consensus 380 ~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-----~~~v~~~a~~~l~~~~~~ 427 (446)
....+ ...|.++..++ .+++.+.|..+|++||.+
T Consensus 93 ---------~~~~l-----~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~~ 131 (134)
T 3ut4_A 93 ---------NKQLV-----KSELERLSSLEIINEDIREIVNLSKDYLHFYYPD 131 (134)
T ss_dssp ---------HHHHH-----HHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC--
T ss_pred ---------HHHHH-----HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHccc
Confidence 12222 35577887765 467899999999999874
No 163
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=59.33 E-value=21 Score=26.73 Aligned_cols=75 Identities=12% Similarity=0.134 Sum_probs=51.9
Q ss_pred hHHHHhccc-CCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHH-HHHhhcC---CCHHHHHHHH
Q 043676 344 VKPLCDLLL-CSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEK-IENLQSH---DNNEIHEKSV 418 (446)
Q Consensus 344 i~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~l~~~---~~~~v~~~a~ 418 (446)
+..|..-+. ..++.++..|+..|..+++.+... |...+....+++. |..+... ...+|+++..
T Consensus 55 ~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~------------fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil 122 (152)
T 3rru_A 55 VKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPS------------FQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRIL 122 (152)
T ss_dssp HHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHH------------HHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHH------------HHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 444555454 357888888999999999887765 5566665556653 5556543 3457999999
Q ss_pred HHHHHhcCCCCC
Q 043676 419 KIFKTYWCGRNE 430 (446)
Q Consensus 419 ~~l~~~~~~~~~ 430 (446)
.++..+...-..
T Consensus 123 ~li~~Wa~~F~~ 134 (152)
T 3rru_A 123 NFIKTWSQGFPG 134 (152)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHhCC
Confidence 999998765544
No 164
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=58.66 E-value=86 Score=32.93 Aligned_cols=307 Identities=14% Similarity=0.075 Sum_probs=0.0
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHh----------cCCHHHHHHhhcCCCChHHHHHHHHHHHH
Q 043676 3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQ----------SGVVPRFVEFLMREDYPQLQYEAAWVLIN 72 (446)
Q Consensus 3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~----------~~~~~~L~~ll~~~~~~~~~~~a~~~L~~ 72 (446)
+...|.++|.. ++.+....+.+|.++-.. .+....+.+ ...+|.+++++-...++.-...++..|..
T Consensus 193 v~~~L~~lL~~-~~~L~~~iLdaLs~L~Ls--~~~l~~vr~~vl~~L~s~~~e~LP~lIkFLL~s~t~~~~~evI~~LR~ 269 (1323)
T 3s4w_B 193 VGKELGELLVQ-NTSLTVPILDVFSSLRLD--PNFLSKIRQLVMGKLSSVRLEDFPVIVKFLLHSVTDTTSLEVIAELRE 269 (1323)
T ss_dssp HHHHHHHHHHH-CSTTHHHHHHHHHHSCCC--HHHHHHHHHHHHHSTTSSCTTHHHHHHHHHHHSCSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CcchHHHHHHHHHcCCCC--HHHHHHHHHHHHHHhccCChhhhHHHHHHHHHhCCHhhHHHHHHHHHH
Q ss_pred HcCCCh--------hhHHHHHhcC--------------ChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCChHHHHHHH
Q 043676 73 IASGTS--------ENTNVVIDHG--------------AVPIFVKLLSS---PSDDVREQAVWALGNVAGDSPRCRDLVL 127 (446)
Q Consensus 73 l~~~~~--------~~~~~~~~~~--------------~i~~L~~~L~~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 127 (446)
-..-.. .....+.+.| ....++..+++ .+..+.+.-+..+.++.....
T Consensus 270 ~L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~lild~lks~l~~~k~i~eAwlK~I~~~~~~~~------- 342 (1323)
T 3s4w_B 270 NLNVQQFILPSRIQASQSKLKSKGLASSSGNQENSDKDCIVLVFDVIKSAIRYEKTISEAWFKAIERIESAAE------- 342 (1323)
T ss_dssp HHHCC----------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHGGGSTT-------
T ss_pred HcCccccccchhhhhhhhhhhccccccCCccccccccchHHHHHHHHHHHHhcChHHHHHHHHHHhCCCcccc-------
Q ss_pred HcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhh--------------hhhHHHHHHhhcCCCHhHHHHHH
Q 043676 128 SQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQV--------------RPALPALAQLVHSNDEDVLTYAC 193 (446)
Q Consensus 128 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--------------~~~~~~l~~ll~~~~~~v~~~~~ 193 (446)
...+..++=++..+.+...+..+-.++.+-............ ..++...-.++++.++.++.-+.
T Consensus 343 -hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~ 421 (1323)
T 3s4w_B 343 -HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGS 421 (1323)
T ss_dssp -CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred -cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Q ss_pred HHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHH
Q 043676 194 WSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEII 273 (446)
Q Consensus 194 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v 273 (446)
.....+-...+. ..+..++..|+..+.++...-...|+.+|..++..++........ .+..+++.+.+- +..=
T Consensus 422 ~lY~~lF~~fd~----~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~a~--~l~giLD~l~~l-~~~Q 494 (1323)
T 3s4w_B 422 LLYKYAFKFFDT----YCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLNAA--FVKGILDYLENM-SPQQ 494 (1323)
T ss_dssp HHHHHHHHSSCH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHTHH--HHHGGGGGGGGC-CHHH
T ss_pred HHHHHHHHhccc----hhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHHHH--HHHHHHHhhcCC-CHHH
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhc
Q 043676 274 KKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNAT 327 (446)
Q Consensus 274 ~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 327 (446)
-......++.++...+..-...++..+.-.+-+.+.+.+...|+..+.+-..+.
T Consensus 495 iRklf~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~v 548 (1323)
T 3s4w_B 495 IRKIFCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTMA 548 (1323)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHHH
No 165
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=57.69 E-value=22 Score=31.90 Aligned_cols=131 Identities=11% Similarity=0.067 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHhcCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc
Q 043676 63 QYEAAWVLINIASGTSENTNVVIDHGAVPIFV-KLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE 141 (446)
Q Consensus 63 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~-~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~ 141 (446)
+.-++..+.-++.+.+ .. +.+..++ ..+.+..+..+-.++++++|+.......+..+........++..+..
T Consensus 243 ~FPaLDLLRl~v~~p~-~~------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLP-YS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCS-CG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCc-hH------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 4446666666665222 11 1233233 33445678889999999999996654233333221123455555421
Q ss_pred -------ccchhHHHHHHHHHHHhhcCC--CCCChhhhhhhHHHHHHhhc---------CCCHhHHHHHHHHHHHhccCC
Q 043676 142 -------HAKLSMLRNATRTLSNFCRGK--PEPPFDQVRPALPALAQLVH---------SNDEDVLTYACWSLSYLADGT 203 (446)
Q Consensus 142 -------~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~l~~ll~---------~~~~~v~~~~~~~l~~l~~~~ 203 (446)
..+..++..++..+.|++... .... ....+.+..++. ..|++....++-+++++....
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~----~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 224567788888888887653 1111 233344555544 358899999999999998644
Q ss_pred c
Q 043676 204 N 204 (446)
Q Consensus 204 ~ 204 (446)
+
T Consensus 392 ~ 392 (425)
T 3pst_A 392 P 392 (425)
T ss_dssp H
T ss_pred H
Confidence 3
No 166
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=57.59 E-value=37 Score=28.06 Aligned_cols=130 Identities=12% Similarity=0.061 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHhcCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc
Q 043676 63 QYEAAWVLINIASGTSENTNVVIDHGAVPIFV-KLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE 141 (446)
Q Consensus 63 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~-~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~ 141 (446)
+.-++..+.-++.+.+ .. +.+..++ ..+.+.++..+-.++++++|+.......+..+........++..+..
T Consensus 71 ~fP~lDllRl~~~~~~-~~------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~ 143 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLP-YS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 143 (253)
T ss_dssp CHHHHHHHHHHGGGCS-CG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHHcCCc-hH------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHH
Confidence 4446666666665222 11 2233322 23445667899999999999996655234444332223344444311
Q ss_pred -------ccchhHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhc---------CCCHhHHHHHHHHHHHhccC
Q 043676 142 -------HAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVH---------SNDEDVLTYACWSLSYLADG 202 (446)
Q Consensus 142 -------~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~---------~~~~~v~~~~~~~l~~l~~~ 202 (446)
..+..++..++..+.|++... .... .......+..++. ..|++....++-+++++...
T Consensus 144 ~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 144 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 135667788888888887643 1111 0223333444443 23778889999999998853
No 167
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=57.15 E-value=27 Score=31.29 Aligned_cols=107 Identities=15% Similarity=0.191 Sum_probs=66.5
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhc-CCHHHHHHhhcC--------CCChHHHHHHHHHHHHHcCCChhhH
Q 043676 11 VWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQS-GVVPRFVEFLMR--------EDYPQLQYEAAWVLINIASGTSENT 81 (446)
Q Consensus 11 l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-~~~~~L~~ll~~--------~~~~~~~~~a~~~L~~l~~~~~~~~ 81 (446)
+.+..+..++.++++++|+... ......+... .....+++.+.. .+ ..++..++..+.|++......+
T Consensus 271 l~~~~~an~MltlR~laNlF~~--~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~n-kNl~IA~ATLllNlAv~~~~~~ 347 (425)
T 3pst_A 271 LGNKNITLTMLTVRILVNCFNN--ENWGVKLLESNQVYKSIFETIDTEFSQASAKQS-QNLAIAVSTLIFNYSALVTKGN 347 (425)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTC--TTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHH-HHHHHHHHHHHHHHHHHHHHSC
T ss_pred cCCCChhHHHHHHHHHHHhcCC--cchHHHHhhCchhHHHHHHHHHHHhhhcccCCC-chHHHHHHHHHHHHHHHHhccc
Confidence 3456789999999999998775 3323434432 234455554431 12 5788888899999986211101
Q ss_pred HHHHhcCChHHHHHhhC---------CCCHHHHHHHHHHHHHhhCCChHHH
Q 043676 82 NVVIDHGAVPIFVKLLS---------SPSDDVREQAVWALGNVAGDSPRCR 123 (446)
Q Consensus 82 ~~~~~~~~i~~L~~~L~---------~~~~~v~~~a~~~l~~l~~~~~~~~ 123 (446)
. +......+..++. ..+++....++.++++|....+..+
T Consensus 348 ~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~ 395 (425)
T 3pst_A 348 S---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLR 395 (425)
T ss_dssp S---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred c---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 0 1223345555554 2478899999999999996555443
No 168
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=54.38 E-value=18 Score=31.75 Aligned_cols=131 Identities=11% Similarity=0.068 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHhcCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc-
Q 043676 63 QYEAAWVLINIASGTSENTNVVIDHGAVPIFV-KLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN- 140 (446)
Q Consensus 63 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~-~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~- 140 (446)
+.-++..+.-++.+.+ .. +.+..++ ..+.+..+..+-.++++++|+.......+..+........++..+.
T Consensus 180 ~FP~LDLLRl~v~~~~-~~------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLP-YS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCS-CG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCC-hH------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 4556666666665222 11 2233333 3344567888999999999999655423333322111233444431
Q ss_pred ------cccchhHHHHHHHHHHHhhcCC--CCCChhhhhhhHHHHHHhhc---------CCCHhHHHHHHHHHHHhccCC
Q 043676 141 ------EHAKLSMLRNATRTLSNFCRGK--PEPPFDQVRPALPALAQLVH---------SNDEDVLTYACWSLSYLADGT 203 (446)
Q Consensus 141 ------~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~l~~ll~---------~~~~~v~~~~~~~l~~l~~~~ 203 (446)
...+..++..++..+.|++... .... ....+.+..++. ..|++....++-+++++....
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~----~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1224567788888888887653 1111 233445555554 358899999999999998643
Q ss_pred c
Q 043676 204 N 204 (446)
Q Consensus 204 ~ 204 (446)
+
T Consensus 329 ~ 329 (362)
T 3l3f_X 329 P 329 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 169
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=50.88 E-value=28 Score=30.49 Aligned_cols=106 Identities=14% Similarity=0.191 Sum_probs=64.3
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcC-CHHHHHHhhc--------CCCChHHHHHHHHHHHHHcCCChhhH
Q 043676 11 VWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSG-VVPRFVEFLM--------REDYPQLQYEAAWVLINIASGTSENT 81 (446)
Q Consensus 11 l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~-~~~~L~~ll~--------~~~~~~~~~~a~~~L~~l~~~~~~~~ 81 (446)
+.+..+..++.++++++|+... ......+.... ....+++.+. ..+ ..++..++..+.|++......+
T Consensus 208 ~~~~~~~n~MltlR~laNlF~~--~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~n-kNl~IA~ATL~lNlAv~~~~~~ 284 (362)
T 3l3f_X 208 LGNKNITLTMLTVRILVNCFNN--ENWGVKLLESNQVYKSIFETIDTEFSQASAKQS-QNLAIAVSTLIFNYSALVTKGN 284 (362)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTC--TTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHH-HHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCChhHHHHHHHHHHHhccC--cchHHHHHhcchhHHHHHHHHHHHhhhcccCCC-chHHHHHHHHHHHHHHHHhccc
Confidence 3356789999999999998775 33233344221 1233333331 123 5788888899999886211101
Q ss_pred HHHHhcCChHHHHHhhC---------CCCHHHHHHHHHHHHHhhCCChHH
Q 043676 82 NVVIDHGAVPIFVKLLS---------SPSDDVREQAVWALGNVAGDSPRC 122 (446)
Q Consensus 82 ~~~~~~~~i~~L~~~L~---------~~~~~v~~~a~~~l~~l~~~~~~~ 122 (446)
. +......+..++. ..+++....++.+++++....+..
T Consensus 285 ~---~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~~ 331 (362)
T 3l3f_X 285 S---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTL 331 (362)
T ss_dssp S---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHH
T ss_pred c---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence 0 1223345555554 257889999999999999655443
No 170
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=50.72 E-value=1.5e+02 Score=27.13 Aligned_cols=115 Identities=16% Similarity=0.152 Sum_probs=77.1
Q ss_pred HHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCH--H-HHHHHHHHHHH
Q 043676 38 IEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSD--D-VREQAVWALGN 114 (446)
Q Consensus 38 ~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~--~-v~~~a~~~l~~ 114 (446)
-+.+.+-=-+..++..|.+++ +.+...|+.++. .+..+..+...+++..+++++-+++. . +....=.++..
T Consensus 109 Fd~VLevysve~i~~aL~S~~-~~l~~~~ckVI~-----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~ 182 (500)
T 3vld_A 109 FDDVLEVYSAEDLVKALRSEI-DPLKVAACRVIE-----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALER 182 (500)
T ss_dssp HHHHHHHSCHHHHHHHHTSSC-HHHHHHHHHHHH-----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcCC-hHHHHHHHHHhc-----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHH
Confidence 355666667889999999997 899999988887 34566777888999999998877442 2 55555556666
Q ss_pred hhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676 115 VAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG 161 (446)
Q Consensus 115 l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 161 (446)
++ .+.-.+..+.+. .. +++..+++..++.+....+..+.-+...
T Consensus 183 Ls-sdeLirrril~n-nl-~lL~~vK~~~~~i~~sRLLdll~il~~~ 226 (500)
T 3vld_A 183 LS-TDELIRRRLFDN-NL-PYLVSVKGRMETVSFVRLIDFLTIEFQF 226 (500)
T ss_dssp HT-TSHHHHHHHHTT-TH-HHHHHHHHHCCHHHHHHHHHHHHHHHTT
T ss_pred cC-chHHHHHHHHHH-hH-HHHHHHhcCCCceeHHHHHHHHHHHhcc
Confidence 65 344355566553 44 4555554556666666666666555444
No 171
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=48.86 E-value=35 Score=25.60 Aligned_cols=74 Identities=12% Similarity=0.016 Sum_probs=51.8
Q ss_pred ChHHHHHHHhc-CCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHH-HHhcccCC---CHHHHHHHHHHHHHHHHhh
Q 043676 300 LIRPIVNLLQN-AEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKP-LCDLLLCS---DPEIVTVCLIGLENILKVG 373 (446)
Q Consensus 300 ~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~-L~~ll~~~---~~~~~~~~~~~l~~l~~~~ 373 (446)
++..+.+-+.+ .++.++..|+..|-.+..++.......+....++.. |..++... ...|+..++..+.......
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F 132 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGF 132 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 45556666664 467778889999999988888777666655555543 66666532 3479999999988876543
No 172
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=48.56 E-value=1e+02 Score=24.64 Aligned_cols=134 Identities=10% Similarity=-0.035 Sum_probs=77.8
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHH
Q 043676 141 EHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH-SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRL 219 (446)
Q Consensus 141 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l 219 (446)
.++.-+.+..++..+....... ....++.+-.++. -++..+....+.+++.+....+.. +.+.+
T Consensus 65 ~s~~~E~r~la~~~l~~~~~~~-------~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~--------~~~~i 129 (220)
T 2b6c_A 65 QKTEREYQYVAIDLALQNVQRF-------SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE--------LPTIF 129 (220)
T ss_dssp TSSSHHHHHHHHHHHHHTGGGC-------CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG--------HHHHH
T ss_pred cCchhHHHHHHHHHHHHHHhhC-------CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH--------HHHHH
Confidence 4444555566666665543221 1233344444444 346677766666666655433322 33567
Q ss_pred HHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043676 220 VELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVID 297 (446)
Q Consensus 220 ~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 297 (446)
.....+++.-++..|+........ ...... .++.+-..+.++ +.-|++...|+|..+...+++....++.
T Consensus 130 ~~W~~s~~~w~rR~ai~~~l~~~~--~~~~~~-----~~~i~~~~~~d~-~~yV~kavgW~Lr~~~k~~~~~v~~fl~ 199 (220)
T 2b6c_A 130 ALFYGAENFWNRRVALNLQLMLKE--KTNQDL-----LKKAIIYDRTTE-EFFIQKAIGWSLRQYSKTNPQWVEELMK 199 (220)
T ss_dssp HHHTTCSSHHHHHHHHHTTTTCGG--GCCHHH-----HHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHH--CCCHHH-----HHHHHHHhCCCh-HHHHHHHHHHHHHHHHhhCHHHHHHHHh
Confidence 788888888888877654422221 111111 234444466777 8999999999999999888886665553
No 173
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=46.53 E-value=1.4e+02 Score=25.61 Aligned_cols=179 Identities=14% Similarity=0.153 Sum_probs=99.1
Q ss_pred chhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHH-hc----c---CchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCh
Q 043676 230 VLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDM-LV----H---NHEEIIKKEISWIISNITAGNREQIQAVIDAGLI 301 (446)
Q Consensus 230 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~-l~----~---~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i 301 (446)
+++..+..+.......++. + .+...+++++++. |. + ..++++-......+..+-..-.+....+.+ .++
T Consensus 45 vKkeiLkLiet~i~~~~d~-~-~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~-~VF 121 (321)
T 1w9c_A 45 VKRETLKLISGWVSRSNDP-Q-MVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFD-AVF 121 (321)
T ss_dssp HHHHHHHHHHHHHTTCSCH-H-HHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHcCCCH-H-HHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHH
Confidence 4455555555555433321 1 2233456666642 21 1 114555555555555554333333444444 456
Q ss_pred HHHHHHHhc---CCcchHHHHHHHHHHhccCC-------CHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHH
Q 043676 302 RPIVNLLQN---AEFDTKKEAAWAISNATSGG-------TQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILK 371 (446)
Q Consensus 302 ~~L~~ll~~---~~~~v~~~a~~aL~~l~~~~-------~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~ 371 (446)
+.-+++++. +-|+.|..-...|..+..++ .+++.+. +++.++--.+++++++...++.++..++.
T Consensus 122 e~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fkl-----vidsiiWa~kH~~r~V~e~gL~il~~ll~ 196 (321)
T 1w9c_A 122 ECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKL-----VLDSIIWAFKHTMRNVADTGLQILFTLLQ 196 (321)
T ss_dssp HHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 666677764 35778877777777665433 2333333 45666667889999999999999999888
Q ss_pred hhhhhhcccCCCCccchHHHHHHHhChHHHHHHh----hcCCCHHHHHHHHHHHHHhcC
Q 043676 372 VGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENL----QSHDNNEIHEKSVKIFKTYWC 426 (446)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l----~~~~~~~v~~~a~~~l~~~~~ 426 (446)
.-++.. .+...|-+.-.++.++++ ..+.+..-.+.-..+|.++|.
T Consensus 197 n~~~~~----------~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~ 245 (321)
T 1w9c_A 197 NVAQEE----------AAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFN 245 (321)
T ss_dssp HHHHCH----------HHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred HHhcCh----------HHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHH
Confidence 765421 134444444445554443 344444444455556666663
No 174
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=46.37 E-value=20 Score=29.70 Aligned_cols=103 Identities=10% Similarity=0.041 Sum_probs=62.2
Q ss_pred cCCCChHHHHHHHHHHHHHcCCChh-hHHHHHhcCChHHHHHhh----CC----CCHHHHHHHHHHHHHhhCCChHHHHH
Q 043676 55 MREDYPQLQYEAAWVLINIASGTSE-NTNVVIDHGAVPIFVKLL----SS----PSDDVREQAVWALGNVAGDSPRCRDL 125 (446)
Q Consensus 55 ~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~~L----~~----~~~~v~~~a~~~l~~l~~~~~~~~~~ 125 (446)
.+.+ +..+..++++++|+.. ++. .+..+........++..+ .+ ++..++..+..++.|++......+.
T Consensus 100 ~~~~-~~~~ml~lR~l~NlF~-~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~- 176 (253)
T 3gae_A 100 GNKN-ITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS- 176 (253)
T ss_dssp TCSS-HHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS-
T ss_pred CCCc-hhHHHHHHHHHHHccc-CCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc-
Confidence 3444 7899999999999998 555 455554432234444433 21 3567888999999999831100000
Q ss_pred HHHcCChHHHHHHhcc--------ccchhHHHHHHHHHHHhhcCC
Q 043676 126 VLSQGALIPLLAELNE--------HAKLSMLRNATRTLSNFCRGK 162 (446)
Q Consensus 126 ~~~~~~i~~l~~~l~~--------~~~~~~~~~a~~~L~~l~~~~ 162 (446)
+......++..+.. ..+++....++-+++++...+
T Consensus 177 --~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 177 --DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp --CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred --hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 01123345555531 236778888888888887543
No 175
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=42.56 E-value=46 Score=22.94 Aligned_cols=37 Identities=11% Similarity=0.177 Sum_probs=32.0
Q ss_pred HHHHHHhChHHHHHHhhcC-CCHHHHHHHHHHHHHhcC
Q 043676 390 AQFVEEAGGLEKIENLQSH-DNNEIHEKSVKIFKTYWC 426 (446)
Q Consensus 390 ~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~~~~~ 426 (446)
.+.+++.+.=..+..|..| ++++|...|..++..+-.
T Consensus 47 ~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK~ 84 (103)
T 1wjt_A 47 IQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKR 84 (103)
T ss_dssp HHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHHHH
Confidence 5888888888889999886 899999999999998743
No 176
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=41.43 E-value=1.9e+02 Score=25.65 Aligned_cols=186 Identities=8% Similarity=0.063 Sum_probs=95.6
Q ss_pred hhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHHhhcCCc--
Q 043676 170 VRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGNIVTGDD-- 246 (446)
Q Consensus 170 ~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~-- 246 (446)
...++-.|+.++.++|+.-|.....++..+-..-..... ++...+-..+.+.+.. ....-....+.+++.+..+..
T Consensus 172 d~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~-~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~P 250 (392)
T 2jak_A 172 DQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRA-YIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALP 250 (392)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSS
T ss_pred CHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCC
Confidence 357888999999999999998888888766543232222 3332344455555544 333445677888888876543
Q ss_pred --hhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHH
Q 043676 247 --FQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAIS 324 (446)
Q Consensus 247 --~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 324 (446)
+.-..+ +...++.+.+...-......-..++..+...++..... ++..+++.--..++.-...-+.-+.
T Consensus 251 LKeehk~F----l~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~ele 321 (392)
T 2jak_A 251 LKEEHKIF----LLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNELE 321 (392)
T ss_dssp CCHHHHHH----HHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHSSCSSCCTTHHHHHHHHH
T ss_pred CcHHHHHH----HHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHH-----HHHHHHHhCCCCCchHHHHHHHHHH
Confidence 111111 12333444443311222223334444443333322211 1122222221223332233334444
Q ss_pred HhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHH
Q 043676 325 NATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGL 366 (446)
Q Consensus 325 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l 366 (446)
.+.....++....+.. .....+..++.+.+-.|.+.|+...
T Consensus 322 eiLe~~~~~~f~~i~~-~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 322 EILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp HHHHTCCHHHHHHHHH-HHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHH-HHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 4545445555554322 2566777888888888888877543
No 177
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=40.52 E-value=1.1e+02 Score=22.71 Aligned_cols=81 Identities=7% Similarity=0.183 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHhCcHHHHHHhcCC------CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccC-chHHHH
Q 043676 202 GTNDKIQAVIEAGVCPRLVELLGH------PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHN-HEEIIK 274 (446)
Q Consensus 202 ~~~~~~~~~~~~~~~~~l~~ll~~------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~v~ 274 (446)
........+++.|++..+-..|.. ++..+|...+.+|.++ +-..+.+.++|+-..++.+-+++ +.++.|
T Consensus 49 ~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~l----PI~~e~Lk~SglGkvv~~l~k~~~et~~nk 124 (145)
T 2xpp_A 49 MSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTM----KIHKEHLVTSGVGKIVYFYSINPKESKEVR 124 (145)
T ss_dssp TCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----CCCHHHHHHHCHHHHHHHHHHCTTSCHHHH
T ss_pred hhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHC----CCCHHHhhcCCCCcchhhhhcCCccCHHHH
Q ss_pred HHHHHHHHHHhc
Q 043676 275 KEISWIISNITA 286 (446)
Q Consensus 275 ~~a~~~l~~l~~ 286 (446)
..|-..+...+.
T Consensus 125 ~la~~Li~~WsR 136 (145)
T 2xpp_A 125 ASAKALVQKWTN 136 (145)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
No 178
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=35.51 E-value=1.7e+02 Score=23.51 Aligned_cols=135 Identities=10% Similarity=0.091 Sum_probs=76.1
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-CCCHhHHHHHH-HHHHHhccCCcHHHHHHHHhCcHHH
Q 043676 141 EHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH-SNDEDVLTYAC-WSLSYLADGTNDKIQAVIEAGVCPR 218 (446)
Q Consensus 141 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~v~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~ 218 (446)
.++..+.+..++..+....... ....++.+-.++. .++..+....+ .+++.+....+. ...+.
T Consensus 71 ~~~~~E~r~~ai~~l~~~~k~~-------~~~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~--------~~~~~ 135 (232)
T 3jxy_A 71 DLPEREFQAAALDIMQKYKKHI-------NETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE--------LISAY 135 (232)
T ss_dssp TSSBHHHHHHHHHHHHHTGGGC-------CGGGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG--------GGGGT
T ss_pred cCcHHHHHHHHHHHHHHHHHhC-------CHHHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH--------HHHHH
Confidence 4455556666666655332211 1123344444444 34566555442 344443332221 24456
Q ss_pred HHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 043676 219 LVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDA 298 (446)
Q Consensus 219 l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 298 (446)
+.....+++.-++..|+..+ +......... ..+..+...+.++ +.-++....|+|..+...+++....+++.
T Consensus 136 l~~W~~s~~~w~rR~ai~~~--l~~~~~~d~~-----~~~~~i~~~~~d~-~~yV~kAvgW~Lr~~~k~~p~~v~~fl~~ 207 (232)
T 3jxy_A 136 IPKWIASDNIWLQRAAILFQ--LKYKQKMDEE-----LLFWIIGQLHSSK-EFFIQKAIGWVLREYAKTNPDVVWEYVQN 207 (232)
T ss_dssp HHHHHHSSCHHHHHHHHHTT--TTCGGGCCHH-----HHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHH--HHHHhCCCHH-----HHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 77788888887887776544 2221111111 1234455666777 89999999999999998888877766654
No 179
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=31.17 E-value=2e+02 Score=22.90 Aligned_cols=140 Identities=8% Similarity=0.007 Sum_probs=81.2
Q ss_pred HHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHHhhcCCchhhHHHH
Q 043676 175 PALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGNIVTGDDFQTQCII 253 (446)
Q Consensus 175 ~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 253 (446)
..+..+..++.-+.+..++..+.......... .++.+-.++.+ +++.+....+.+++.+....+..
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~--------~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~----- 124 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLE--------EVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE----- 124 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHH--------HHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG-----
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHH--------HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH-----
Confidence 44555666677778888877777654221111 12223334433 45555555445566665433321
Q ss_pred hcCChHHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCH
Q 043676 254 NHGAVPYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQ 332 (446)
Q Consensus 254 ~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 332 (446)
..+.+.....++ +.-++..|+..+..... .+++. .++.+-.++.+++.-|++...|+|..++.. ++
T Consensus 125 ---~~~~i~~W~~s~-~~w~rR~ai~~~l~~~~~~~~~~--------~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~-~~ 191 (220)
T 2b6c_A 125 ---LPTIFALFYGAE-NFWNRRVALNLQLMLKEKTNQDL--------LKKAIIYDRTTEEFFIQKAIGWSLRQYSKT-NP 191 (220)
T ss_dssp ---HHHHHHHHTTCS-SHHHHHHHHHTTTTCGGGCCHHH--------HHHHHHHTTTCCCHHHHHHHHHHHHHHTTT-CH
T ss_pred ---HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHCCCHHH--------HHHHHHHhCCChHHHHHHHHHHHHHHHHhh-CH
Confidence 235678888888 77777777654432222 22211 233333466777889999999999999987 55
Q ss_pred HHHHHHHH
Q 043676 333 EQIKHLVR 340 (446)
Q Consensus 333 ~~~~~l~~ 340 (446)
+....++.
T Consensus 192 ~~v~~fl~ 199 (220)
T 2b6c_A 192 QWVEELMK 199 (220)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55444443
No 180
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=28.75 E-value=3.7e+02 Score=26.66 Aligned_cols=101 Identities=9% Similarity=0.039 Sum_probs=67.5
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcC---CCHhHHHHHHHHHHHhccC---CcHHHHHHHHhC
Q 043676 141 EHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHS---NDEDVLTYACWSLSYLADG---TNDKIQAVIEAG 214 (446)
Q Consensus 141 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~---~~~~v~~~~~~~l~~l~~~---~~~~~~~~~~~~ 214 (446)
.+.+..+...+..++.+|+.-.|........+++..+..-|.. ..+.-...++.++..++.. .+....++. .
T Consensus 349 fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~yr~hl~--~ 426 (799)
T 1vsy_4 349 QNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKLYRVHIT--N 426 (799)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTTGGGHHH--H
T ss_pred CcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcccHHHHH--H
Confidence 6778888899999999999877755567778888888888877 4566666677777666521 111111122 4
Q ss_pred cHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676 215 VCPRLVELLGHPSPSVLTPALRTVGNIVT 243 (446)
Q Consensus 215 ~~~~l~~ll~~~~~~~~~~a~~~l~~l~~ 243 (446)
++..++.-++.+|+.-...++..+..++.
T Consensus 427 lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 427 VLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp HHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 55556666666777666667777766654
No 181
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=28.11 E-value=3.5e+02 Score=24.77 Aligned_cols=105 Identities=14% Similarity=0.135 Sum_probs=72.3
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCCh-H-HHHHHHHHHHHHcCCChhhH
Q 043676 4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP-Q-LQYEAAWVLINIASGTSENT 81 (446)
Q Consensus 4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~-~-~~~~a~~~L~~l~~~~~~~~ 81 (446)
+..++..|.|+++.+...++..+.. ..+...+...+++..|++++-..+++ . +....=.++..+++ +.=.+
T Consensus 118 ve~i~~aL~S~~~~l~~~~ckVI~~------s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lss-deLir 190 (500)
T 3vld_A 118 AEDLVKALRSEIDPLKVAACRVIEN------SQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLST-DELIR 190 (500)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHT------CSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTT-SHHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHhcc------cCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCc-hHHHH
Confidence 4668889999999999999999872 45567788889999999999877633 2 44444456666755 44456
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 043676 82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVA 116 (446)
Q Consensus 82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~ 116 (446)
..+.+. ..+.+..+=++.++.+....+..+.-+.
T Consensus 191 rril~n-nl~lL~~vK~~~~~i~~sRLLdll~il~ 224 (500)
T 3vld_A 191 RRLFDN-NLPYLVSVKGRMETVSFVRLIDFLTIEF 224 (500)
T ss_dssp HHHHTT-THHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHH-hHHHHHHHhcCCCceeHHHHHHHHHHHh
Confidence 666654 4666666555566666665565555554
No 182
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=27.58 E-value=3.2e+02 Score=27.07 Aligned_cols=120 Identities=12% Similarity=0.080 Sum_probs=68.3
Q ss_pred hHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc--ccchhHHHHHHHHHHH
Q 043676 80 NTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE--HAKLSMLRNATRTLSN 157 (446)
Q Consensus 80 ~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~~~~~~a~~~L~~ 157 (446)
.+..+++. ..+.+...+.+.+..+...+..++.+++.-.|.+++.+.. +++..+..-|.. -.++.-...++.+|..
T Consensus 332 ~~~~fV~~-l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP-~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~ 409 (799)
T 1vsy_4 332 CHEEIVEI-FLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYD-KILIDLYDTLADQFINSRHRIISSLKQFTR 409 (799)
T ss_dssp HHHHHHHH-HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHH-HHHHHHHHHHTTTTTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehH-HHHHHHHHHhccccccchhHHHHHHHHHHH
Confidence 34444432 3455556677889999999999999999877744444432 233344444422 2334444556666665
Q ss_pred hhcCCCC--CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhcc
Q 043676 158 FCRGKPE--PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLAD 201 (446)
Q Consensus 158 l~~~~~~--~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~ 201 (446)
++..-.. .-......++..++.-+..+|+.--..++..+..++.
T Consensus 410 ~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 410 VIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp THHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 5533211 1112333444455555567788777777777777653
No 183
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=26.34 E-value=1.2e+02 Score=23.85 Aligned_cols=112 Identities=14% Similarity=0.080 Sum_probs=0.0
Q ss_pred cCChHHHHHhhCC------CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchh--HHHHHHHHHHHh
Q 043676 87 HGAVPIFVKLLSS------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLS--MLRNATRTLSNF 158 (446)
Q Consensus 87 ~~~i~~L~~~L~~------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~--~~~~a~~~L~~l 158 (446)
+..+|.++.++.+ .+.......+.....+. .++...-.-.-...+|.++.++-...-.. +|+.|+..+..+
T Consensus 39 ~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl-~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I 117 (196)
T 4atg_A 39 QQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLI-KNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYI 117 (196)
T ss_dssp TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Q ss_pred hcCCCCCChhhhhhhHHHHHHhhcCC--CHhHHHHHHHHHHHh
Q 043676 159 CRGKPEPPFDQVRPALPALAQLVHSN--DEDVLTYACWSLSYL 199 (446)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~~~~~l~~l 199 (446)
+.............+...+.+.+.++ ......-|+..+..+
T Consensus 118 ~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 118 YDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
No 184
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=26.19 E-value=2.5e+02 Score=22.51 Aligned_cols=140 Identities=13% Similarity=0.105 Sum_probs=79.2
Q ss_pred HHHHHhhcCCCHhHHHHHHHHHHHhccC-CcHHHHHHHHhCcHHHHHHhcCC-CCccchhHH-HHHHHHhhcCCchhhHH
Q 043676 175 PALAQLVHSNDEDVLTYACWSLSYLADG-TNDKIQAVIEAGVCPRLVELLGH-PSPSVLTPA-LRTVGNIVTGDDFQTQC 251 (446)
Q Consensus 175 ~~l~~ll~~~~~~v~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a-~~~l~~l~~~~~~~~~~ 251 (446)
..+..+..++..+.+..++..+...... .++ .++.+-.++.. +++.+.... ..+++.+....+.
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~---------~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~---- 130 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINET---------HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE---- 130 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG---------GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG----
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH---------HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH----
Confidence 3455566666677777777777643221 121 12223333333 444443332 2334444433322
Q ss_pred HHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCC
Q 043676 252 IINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGG 330 (446)
Q Consensus 252 ~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 330 (446)
...+.+...+.++ +.-++..|+..+..... .++. ..++.+...+.+++.-|++...|+|..++..
T Consensus 131 ----~~~~~l~~W~~s~-~~w~rR~ai~~~l~~~~~~d~~--------~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~- 196 (232)
T 3jxy_A 131 ----LISAYIPKWIASD-NIWLQRAAILFQLKYKQKMDEE--------LLFWIIGQLHSSKEFFIQKAIGWVLREYAKT- 196 (232)
T ss_dssp ----GGGGTHHHHHHSS-CHHHHHHHHHTTTTCGGGCCHH--------HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-
T ss_pred ----HHHHHHHHHhcCC-chHHHHHHHHHHHHHHhCCCHH--------HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-
Confidence 1346678888888 77777777654422211 2222 1334455677788899999999999999987
Q ss_pred CHHHHHHHHHc
Q 043676 331 TQEQIKHLVRE 341 (446)
Q Consensus 331 ~~~~~~~l~~~ 341 (446)
+++....+++.
T Consensus 197 ~p~~v~~fl~~ 207 (232)
T 3jxy_A 197 NPDVVWEYVQN 207 (232)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 56665555543
No 185
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=22.65 E-value=2.2e+02 Score=20.62 Aligned_cols=94 Identities=19% Similarity=0.050 Sum_probs=60.4
Q ss_pred ChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHH
Q 043676 257 AVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIK 336 (446)
Q Consensus 257 ~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 336 (446)
+++.|+..|++. +..+...++..|... ++ .++|.+.+.+++.|..-+. +.|..+...-..+...
T Consensus 32 ~lp~LL~WLQD~-NWPvA~~i~~~L~~~----~~--------~l~p~I~~vl~s~D~~W~y---wil~~lv~~~~~~~~~ 95 (134)
T 3ut4_A 32 IIFDLLKWLQDY-NWPIAKDILPVVVLH----QS--------IAMPHILTILQGNDIMWKY---WVIKLMIPYLIYPNKQ 95 (134)
T ss_dssp HHHHHHGGGSCT-TSTTHHHHHHHHHHT----HH--------HHHHHHHHHHHSSCHHHHH---HHHHHHGGGCCHHHHH
T ss_pred HHHHHHHHHhcC-CCccHHHHHHHHHHc----cH--------hhHHHHHHHHHcCChHHHH---HHHHHHHHcCCHHHHH
Confidence 568899999998 887777777666644 12 2566677778877776654 4454444443444444
Q ss_pred HHHHcCChHHHHhcccC-----CCHHHHHHHHHHHHHHHH
Q 043676 337 HLVREGCVKPLCDLLLC-----SDPEIVTVCLIGLENILK 371 (446)
Q Consensus 337 ~l~~~~~i~~L~~ll~~-----~~~~~~~~~~~~l~~l~~ 371 (446)
. ..+.|.++..+ ...++...|-.+|..++.
T Consensus 96 ~-----l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~ 130 (134)
T 3ut4_A 96 L-----VKSELERLSSLEIINEDIREIVNLSKDYLHFYYP 130 (134)
T ss_dssp H-----HHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC-
T ss_pred H-----HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcc
Confidence 4 34456666554 346788888888887654
No 186
>2g7o_A Protein TRAM; four helix bundle, tetramer, DNA binding protein; 1.40A {Escherichia coli} SCOP: a.241.1.1 PDB: 3d8a_A 2g9e_A
Probab=21.35 E-value=94 Score=19.50 Aligned_cols=20 Identities=15% Similarity=0.380 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhcCCCCC
Q 043676 411 NEIHEKSVKIFKTYWCGRNE 430 (446)
Q Consensus 411 ~~v~~~a~~~l~~~~~~~~~ 430 (446)
+++++.+..-+++||+.++|
T Consensus 50 ~~Ir~~~~e~~~~FFpe~~~ 69 (70)
T 2g7o_A 50 EDIREKVSSEMERFFPKNDD 69 (70)
T ss_dssp HHHHHHHHHHHHHHSCSCTT
T ss_pred HHHHHHHHHHHHHhCccccC
Confidence 46788899999999987665
Done!