BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043678
(303 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 100/266 (37%), Gaps = 57/266 (21%)
Query: 29 LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDI 88
L A +T LHI E V +E + C + KG TPLH+AAK+G +
Sbjct: 108 LATTAGHTPLHIAAREGHVETVLALLEKEASQAC------MTKKGFTPLHVAAKYGKVRV 161
Query: 89 VRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNN 147
+L+ER A G L T LH AV H N+D+ KL
Sbjct: 162 AELLLERDAHPNAAGKNGL-------------------TPLHVAVHHNNLDIVKL----- 197
Query: 148 LILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAAXXXXXXXXXXXXXETDQYGWTPIQST 207
L+ R + + L + Q N + A QYG
Sbjct: 198 --LLPRGGSPHSPAWNGYTPLHIAAKQ-NQVEVARSLL------------QYGG------ 236
Query: 208 SNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLR 267
S A+ + +T LHLAA +G A V ++S+ L + G LH HV
Sbjct: 237 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVAD 295
Query: 268 NLLENNSLARSLIDEGDAKGNTPLHV 293
L+++ ++D G TPLHV
Sbjct: 296 VLIKHG----VMVDATTRMGYTPLHV 317
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 15/87 (17%)
Query: 70 NAKGDTPLHLAAKFGHFDIVRVLIERAK---------------LAQRGDEELENRIEAFR 114
+ +G TPLHLAA+ GH ++V +L+ + +AQ G + + +
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG 301
Query: 115 QMIRMVNNEKNTALHEAVSHGNVDLFK 141
M+ T LH A +GN+ L K
Sbjct: 302 VMVDATTRMGYTPLHVASHYGNIKLVK 328
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 92/251 (36%), Gaps = 66/251 (26%)
Query: 70 NAKGDTPLHLAAKFGHFDIVRVLIE-RAKLAQRGDEELENRIEAFRQMIRMVNNEKNTAL 128
N K +TPLH+AA+ GH ++ + L++ +AK+ + ++ T L
Sbjct: 44 NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD-------------------QTPL 84
Query: 129 HEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAAXXXXXXX 188
H A G+ ++ KL NN N+ H L I +
Sbjct: 85 HCAARIGHTNMVKLLLENN---------ANPNLATTAGHTPL-HIAAREGHVETVLALLE 134
Query: 189 XXXXXXETDQYGWTPIQSTS------------------NIADKDRKMTALHLAAGKGDAR 230
+ G+TP+ + N A K+ +T LH+A +
Sbjct: 135 KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN-GLTPLHVAVHHNNLD 193
Query: 231 TVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDA----- 285
V+ ++ + + WN H+ +N +E +ARSL+ G +
Sbjct: 194 IVKLLLPRGGSPH----SPAWN----GYTPLHIAAKQNQVE---VARSLLQYGGSANAES 242
Query: 286 -KGNTPLHVLA 295
+G TPLH+ A
Sbjct: 243 VQGVTPLHLAA 253
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 5 FFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPA 64
+AA AG + + + + + + T LH+ I E V E+L K A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIV------EVLLKHGA 71
Query: 65 LLLQVNAKGDTPLHLAAKFGHFDIVRVLIERA 96
+ + GDTPLHLAA +GH +IV VL++
Sbjct: 72 DVNAADKMGDTPLHLAALYGHLEIVEVLLKNG 103
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 211 ADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLL 270
A+ D T LHLAA KG VE ++ D G LH A + H+ + LL
Sbjct: 42 AEDDSGKTPLHLAAIKGHLEIVEVLLKHGADV-NAADKMGDTPLHLAALYGHLEIVEVLL 100
Query: 271 ENNSLARSLIDEGDAKGNTPLHVLA 295
+N + ++ D G TPLH+ A
Sbjct: 101 KNG----ADVNATDTYGFTPLHLAA 121
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 31/209 (14%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFR 114
V+E+L P+LLLQ + G PLH + F +I L+ + + D ++ F
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH 77
Query: 115 QMIRMVNNEKNTALHE--------AVSHGNVDLFKL---KKTNNLILIFRDSDEKTNILF 163
+ N E +L++ +++ V L KK + ++ I
Sbjct: 78 IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD 137
Query: 164 KFRHLDLFRIQTNSIYAAXXXXXXXXXXXXXETDQYGWTPIQSTSNIADKDRKMTALHLA 223
KF + L R + D+ GWTP+ LA
Sbjct: 138 KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA--------------LA 183
Query: 224 AGKGDART--VERIISENPKCYELVDNRG 250
G GDA VE+ +E Y+LVDN+G
Sbjct: 184 EGHGDAAVLLVEKYGAE----YDLVDNKG 208
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 220 LHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSL 279
LH A + + V+ ++ P D G LH++ VSF ++ + L + +L
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS-VSFQAHEITSFLLSKMENVNL 64
Query: 280 IDEGDAKGNTPLHVLAAV 297
D D G TP H+ +V
Sbjct: 65 DDYPDDSGWTPFHIACSV 82
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 31/209 (14%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFR 114
V+E+L P+LLLQ + G PLH + F +I L+ + + D ++ F
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH 77
Query: 115 QMIRMVNNEKNTALHE--------AVSHGNVDLFKL---KKTNNLILIFRDSDEKTNILF 163
+ N E +L++ +++ V L KK + ++ I
Sbjct: 78 IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD 137
Query: 164 KFRHLDLFRIQTNSIYAAXXXXXXXXXXXXXETDQYGWTPIQSTSNIADKDRKMTALHLA 223
KF + L R + D+ GWTP+ LA
Sbjct: 138 KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA--------------LA 183
Query: 224 AGKGDART--VERIISENPKCYELVDNRG 250
G GDA VE+ +E Y+LVDN+G
Sbjct: 184 EGHGDAAVLLVEKYGAE----YDLVDNKG 208
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 220 LHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSL 279
LH A + + V+ ++ P D G LH++ VSF ++ + L + +L
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS-VSFQAHEITSFLLSKMENVNL 64
Query: 280 IDEGDAKGNTPLHVLAAV 297
D D G TP H+ +V
Sbjct: 65 DDYPDDSGWTPFHIACSV 82
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 31/209 (14%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFR 114
V+E+L P+LLLQ + G PLH + F +I L+ + + D ++ F
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH 77
Query: 115 QMIRMVNNEKNTALHE--------AVSHGNVDLFKL---KKTNNLILIFRDSDEKTNILF 163
+ N E +L++ +++ V L KK + ++ I
Sbjct: 78 IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD 137
Query: 164 KFRHLDLFRIQTNSIYAAXXXXXXXXXXXXXETDQYGWTPIQSTSNIADKDRKMTALHLA 223
KF + L R + D+ GWTP+ LA
Sbjct: 138 KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA--------------LA 183
Query: 224 AGKGDART--VERIISENPKCYELVDNRG 250
G GDA VE+ +E Y+LVDN+G
Sbjct: 184 EGHGDAAVLLVEKYGAE----YDLVDNKG 208
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 220 LHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSL 279
LH A + + V+ ++ P D G LH++ VSF ++ + L + +L
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS-VSFQAHEITSFLLSKMENVNL 64
Query: 280 IDEGDAKGNTPLHVLAAV 297
D D G TP H+ +V
Sbjct: 65 DDYPDDSGWTPFHIACSV 82
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 5 FFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPA 64
+AA AG + + + + + K T LH+ ++ E V E+L K A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIV------EVLLKNGA 71
Query: 65 LLLQVNAKGDTPLHLAAKFGHFDIVRVLIERA 96
+ ++A G+TPLHL A +GH +IV VL++
Sbjct: 72 DVNAIDAIGETPLHLVAMYGHLEIVEVLLKHG 103
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 234 RIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHV 293
RI+ N D G LH A ++ H+ + LL+N + ++ DA G TPLH+
Sbjct: 31 RILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI----DAIGETPLHL 86
Query: 294 LA 295
+A
Sbjct: 87 VA 88
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 16/135 (11%)
Query: 48 ENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELE 107
EN + V++++E A + ++ G TPLH AAK GH +IV++LI + D +
Sbjct: 13 ENGNKDRVKDLIENG-ADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR 71
Query: 108 NRI-----EAFRQMIRMV----------NNEKNTALHEAVSHGNVDLFKLKKTNNLILIF 152
+ E +++++++ +++ T LH A G+ ++ KL + +
Sbjct: 72 TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNT 131
Query: 153 RDSDEKTNILFKFRH 167
DSD +T + H
Sbjct: 132 SDSDGRTPLDLAREH 146
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 21/77 (27%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKN 125
VNAK G TPLH AAK GH +IV++LI + + +++
Sbjct: 96 VNAKDSDGRTPLHYAAKEGHKEIVKLLISKG------------------ADVNTSDSDGR 137
Query: 126 TALHEAVSHGNVDLFKL 142
T L A HGN ++ KL
Sbjct: 138 TPLDLAREHGNEEIVKL 154
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 209 NIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRN 268
N +D D + T LH AA +G V+ +IS+ D+ G LHYA H ++
Sbjct: 31 NASDSDGR-TPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKL 88
Query: 269 LLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302
L+ + ++ D+ G TPLH A KE
Sbjct: 89 LISKGAD----VNAKDSDGRTPLHYAAKEGHKEI 118
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERA 96
+ E+L K A + V+ GDTPLHLAA GH +IV VL++
Sbjct: 95 IVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 5 FFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPA 64
+AA AG + + + + + T + T LH+ E V E+L K A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIV------EVLLKHGA 71
Query: 65 LLLQVNAKGDTPLHLAAKFGHFDIVRVLIERA 96
+ ++ G TPLHLAA GH +IV VL++
Sbjct: 72 DVNAIDIMGSTPLHLAALIGHLEIVEVLLKHG 103
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERA 96
+ E+L K A + V+ GDTPLHLAA GH +IV VL++
Sbjct: 95 IVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 5 FFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPA 64
+AA AG + + + + + T + T LH+ E V E+L K A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIV------EVLLKHGA 71
Query: 65 LLLQVNAKGDTPLHLAAKFGHFDIVRVLIERA 96
+ ++ G TPLHLAA GH +IV VL++
Sbjct: 72 DVNAIDIXGSTPLHLAALIGHLEIVEVLLKHG 103
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERA 96
+ E+L K A + + G TPLHLAAK+GH +IV VL++
Sbjct: 95 IVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHG 136
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIERAK---------------LAQRGDEELENRIEAFRQMI 117
G TPLHLAA GH +IV VL++ A G E+ + +
Sbjct: 47 GYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADV 106
Query: 118 RMVNNEKNTALHEAVSHGNVDLFKL 142
+N+ +T LH A +G++++ ++
Sbjct: 107 NAYDNDGHTPLHLAAKYGHLEIVEV 131
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 234 RIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHV 293
RI+ N DN G+ LH A + H+ + LL+N + ++ D G TPLH+
Sbjct: 31 RILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNG----ADVNASDLTGITPLHL 86
Query: 294 LAAVRPKEF 302
AA E
Sbjct: 87 AAATGHLEI 95
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 21/100 (21%)
Query: 196 TDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLH 255
TD G+TP LHLAA G VE ++ +N D G LH
Sbjct: 43 TDNDGYTP----------------LHLAASNGHLEIVE-VLLKNGADVNASDLTGITPLH 85
Query: 256 YAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLA 295
A + H+ + LL++ + + D G+TPLH+ A
Sbjct: 86 LAAATGHLEIVEVLLKHGADVNAY----DNDGHTPLHLAA 121
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 70 NAKGDTPLHLAAKFGHFDIVRVLIER-AKLAQR--------------GDEELENRIEAFR 114
NA PLHLA + GHF +V+ L++ AK ++ G EL +
Sbjct: 116 NADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHG 175
Query: 115 QMIRMVNNEKNTALHEAVSHGNVDLFKL 142
I NN+ NTALHEAV +V + +L
Sbjct: 176 ASINASNNKGNTALHEAVIEKHVFVVEL 203
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 59 LEKCPALLLQVNAK---GDTPLHLAAKFGHFDIVRVLIE 94
L K PA L VN G +PLH+AA G D++ +L++
Sbjct: 69 LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLK 107
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 12/72 (16%)
Query: 28 LLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAK---GDTPLHLAAKFG 84
+ +K NT LH + +N + V+++L K VNA+ G+TPLHLAAK G
Sbjct: 3 MWGSKDGNTPLH-----NAAKNGHAEEVKKLLSKG----ADVNARSKDGNTPLHLAAKNG 53
Query: 85 HFDIVRVLIERA 96
H +IV++L+ +
Sbjct: 54 HAEIVKLLLAKG 65
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 5 FFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPA 64
AA G++E K + + +K NT LH+ +N + V+ +L K
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHL-----AAKNGHAEIVKLLLAKG-- 65
Query: 65 LLLQVNAK---GDTPLHLAAKFGHFDIVRVL 92
VNA+ G+TP HLA K GH +IV++L
Sbjct: 66 --ADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 16/108 (14%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAK---------------LA 99
+ E+L K A + + G TPLHLAA FGH +IV VL++ A
Sbjct: 62 IVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAA 121
Query: 100 QRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFK-LKKTN 146
RG E+ + + + + TA ++++GN DL + L+K N
Sbjct: 122 NRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQKLN 169
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIERA 96
G TPLHLAA +GH +IV VL++
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNG 70
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 234 RIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHV 293
RI+ N D GW LH A H+ + LL+N + + D G+TPLH+
Sbjct: 31 RILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY----DTLGSTPLHL 86
Query: 294 LA 295
A
Sbjct: 87 AA 88
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%), Gaps = 3/31 (9%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIERA 96
VNA+ GDTPLHLAA+ GH +IV VL++
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVLLKNG 70
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIE 94
+ E+L K A + ++ G TPLHLAAK GH +IV VL++
Sbjct: 62 IVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLK 101
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 57 EILEKCPALLLQVNAK---GDTPLHLAAKFGHFDIVRVLIE 94
EI+E VNA G TPLHLAA GH +IV VL++
Sbjct: 94 EIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLK 134
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 5 FFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPA 64
+AA AG + + + + + + NT LH+ E V E+L K A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIV------EVLLKHGA 71
Query: 65 LLLQVNAKGDTPLHLAAKFGHFDIVRVLIERA 96
+ + G TPLHLAA FGH +IV VL++
Sbjct: 72 DVNAHDNDGSTPLHLAALFGHLEIVEVLLKHG 103
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Query: 73 GDTPLHLAAKFGHFDIVRVL------------IERAKLAQRGDEELENRIEAFRQMIRMV 120
G +PLHLAA++GHF VL ++R L E N +E + V
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 121 NNE---KNTALHEAVSHGNVDLFKL 142
N + K TALH A H + ++ +L
Sbjct: 94 NAKDMLKMTALHWATEHNHQEVVEL 118
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERA 96
+ E+L K A + +++ G TPLHLAAK+G+ +IV VL++
Sbjct: 95 IVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHG 136
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 5 FFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPA 64
+AA AG + + + + + T LH+ S E V E+L K A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIV------EVLLKHGA 71
Query: 65 LLLQVNAKGDTPLHLAAKFGHFDIVRVLIERA 96
+ + G TPLHLAA +GH +IV VL++
Sbjct: 72 DVDASDVFGYTPLHLAAYWGHLEIVEVLLKNG 103
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 234 RIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHV 293
RI+ N DN G LH A S H+ + LL++ + +D D G TPLH+
Sbjct: 31 RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHG----ADVDASDVFGYTPLHL 86
Query: 294 LA 295
A
Sbjct: 87 AA 88
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERA 96
+ E+L K A + + +G TPLHLAA FGH +IV VL++
Sbjct: 95 IVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERA 96
+ E+L K A + V+ G TPL LAA FGH +IV VL++
Sbjct: 62 IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG 103
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 197 DQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHY 256
D GWTP LHLAA G VE ++ +N VD+ G L
Sbjct: 44 DASGWTP----------------LHLAAFNGHLEIVE-VLLKNGADVNAVDHAGMTPLRL 86
Query: 257 AMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLA 295
A + H+ + LL+N + ++ D +G+TPLH+ A
Sbjct: 87 AALFGHLEIVEVLLKNGAD----VNANDMEGHTPLHLAA 121
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 65/135 (48%), Gaps = 16/135 (11%)
Query: 48 ENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELE 107
EN + V+++LE A + ++ G TPLHLAA+ GH ++V++L+ + D + +
Sbjct: 13 ENGNKDRVKDLLENG-ADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK 71
Query: 108 NRIE-----AFRQMIRMV----------NNEKNTALHEAVSHGNVDLFKLKKTNNLILIF 152
+ +++++++ +++ T LH A +G+ ++ KL +
Sbjct: 72 TPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNT 131
Query: 153 RDSDEKTNILFKFRH 167
DSD +T + H
Sbjct: 132 SDSDGRTPLDLAREH 146
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 209 NIADKDRKMTALHLAAGKGDARTVERIISE--NPKCYELVDNRGWNFLHYAMVSFHVGQL 266
N +D D K T LHLAA G V+ ++S+ +P D+ G LH A + H +
Sbjct: 31 NASDSDGK-TPLHLAAENGHKEVVKLLLSQGADPNAK---DSDGKTPLHLAAENGHKEVV 86
Query: 267 RNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302
+ LL + + D+ G TPLH+ A KE
Sbjct: 87 KLLLSQGADPNAK----DSDGKTPLHLAAENGHKEV 118
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
Length = 154
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIE 94
+ E+L + A + V+ G TPLHLAA GH +IV VL++
Sbjct: 50 IVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLK 89
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERA 96
+ E+L K A + +A G TPL+LAA +GH +IV VL++
Sbjct: 83 IVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHG 124
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 73 GDTPLHLAAKFGHFDIVRVLI 93
G TPLH+AA GH +IV VL+
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLL 55
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 59 LEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLA--QRGDEELENRIEA--FR 114
L K AL+ +A+G T LHLAAK GH+++V+ L+ ++ + D I A ++
Sbjct: 63 LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK 122
Query: 115 QM------------IRMVNNEKNTALHEAVSHGNVDLFKL 142
+ I + +NE+N LH A G VD+ ++
Sbjct: 123 HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 18/117 (15%)
Query: 75 TPLHLAAKFGHFDIVRVLIERAKLAQRGDEELE---------NRIEAFRQMIRM------ 119
+PLH AA+ GH DI +L++ E+ N +EA + +I+
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 120 VNNEKNTALHEAVSHGNVDLFKLKKTNNLILI-FRDSDEKTNILF--KFRHLDLFRI 173
+ E +T LH A G+ ++ + +N + + +D T +++ +++H+DL ++
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIER 95
+ EIL L VN GD+PLH+AA+ +D V + + R
Sbjct: 159 IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR 199
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 218 TALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNS 274
T LHLAA KG V+ ++S D+ GW + +A HV ++ LL S
Sbjct: 79 TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS 135
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIE 94
+ E+L K A + ++ G TPLHLAA GH +IV VL+E
Sbjct: 62 IVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLE 101
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIERA 96
G TPLHLAAK GH +IV VL++
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHG 70
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 20/97 (20%)
Query: 63 PALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAK----LAQRGDEEL------ENRIEA 112
P+L ++ +G + +HLAA+FGH IV LI + + + Q G L + ++
Sbjct: 102 PSL---IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDP 158
Query: 113 FRQMIRM---VN----NEKNTALHEAVSHGNVDLFKL 142
R ++ VN KNTALH AV GN + L
Sbjct: 159 TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL 195
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 215 RKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNS 274
R T LH+A+ KGD +VE ++ +N + D+ GW LH A H+ + LL++
Sbjct: 9 RGETLLHIASIKGDIPSVEYLL-QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH-- 65
Query: 275 LARSLIDEGDAKGNTPLH 292
++L++ + ++PLH
Sbjct: 66 --KALVNTTGYQNDSPLH 81
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 25/97 (25%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAV 132
G TPLH A GH +V +L++ + ++ + ++ LH+A
Sbjct: 43 GWTPLHEACNHGHLKVVELLLQH------------------KALVNTTGYQNDSPLHDAA 84
Query: 133 SHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLD 169
+G+VD+ K L+L + S NI F R +D
Sbjct: 85 KNGHVDIVK------LLLSYGASRNAVNI-FGLRPVD 114
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLI 93
V E+L + AL+ + D+PLH AAK GH DIV++L+
Sbjct: 58 VVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 36 TILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIE 94
T LH+ +S E V E+L K A + + G TPLHLAA GH +IV VL++
Sbjct: 49 TPLHLAAVSGHLEIV------EVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLK 101
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 36 TILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIE 94
T LH+ ++ E V E+L K A + + G TPLHLAA GH +IV VL++
Sbjct: 82 TPLHLAAMTGHLEIV------EVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLK 134
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 234 RIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHV 293
RI+ N VDN G LH A VS H+ + LL++ + +D D G TPLH+
Sbjct: 31 RILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHG----ADVDAADVYGFTPLHL 86
Query: 294 LA 295
A
Sbjct: 87 AA 88
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%), Gaps = 3/29 (10%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIE 94
VNAK G TPLHLAA+ GH ++V++L+E
Sbjct: 94 VNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 19/22 (86%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIE 94
G TPLHLAA+ GH ++V++L+E
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE 23
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 16/135 (11%)
Query: 48 ENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAK---------- 97
EN + V++++E A + ++ G TPLH AA+ GH ++V++LI +
Sbjct: 13 ENGNKDRVKDLIENG-ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR 71
Query: 98 -----LAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIF 152
A+ G +E+ + + + +++ T LH A +G+ ++ KL + +
Sbjct: 72 TPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNT 131
Query: 153 RDSDEKTNILFKFRH 167
DSD +T + H
Sbjct: 132 SDSDGRTPLDLAREH 146
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%), Gaps = 3/29 (10%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIE 94
VNAK G TPLHLAA+ GH ++V++L+E
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 19/22 (86%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIE 94
G TPLHLAA+ GH ++V++L+E
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE 23
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIE 94
+ E+L K A + ++ +G TPLHLAA+ GH +IV VL++
Sbjct: 95 IVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 57 EILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIE 94
E+L K A + + G TPLHLAA GH +IV VL++
Sbjct: 64 EVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLK 101
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIERAK---------------LAQRGDEELENRIEAFRQMI 117
G TPLHL GH +I+ VL++ A A RG E+ + + +
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV 106
Query: 118 RMVNNEKNTALHEAVSHGNVDLFKL 142
++ + T LH A G++++ ++
Sbjct: 107 NAMDYQGYTPLHLAAEDGHLEIVEV 131
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 6/43 (13%)
Query: 55 VEEILEKCPALLLQVNAK---GDTPLHLAAKFGHFDIVRVLIE 94
+ E+L K A VNA+ G TPLHLAA GH +IV VL+E
Sbjct: 62 IVEVLLKHGA---DVNARDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIERA 96
G TPLHLAAK GH +IV VL++
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHG 70
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%), Gaps = 6/41 (14%)
Query: 57 EILEKCPALLLQVNAK---GDTPLHLAAKFGHFDIVRVLIE 94
E+L K A VNAK G TPLHLAA+ GH +IV VL++
Sbjct: 64 EVLLKAGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLK 101
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERA 96
+ E+L K A + ++ G TPLHLAAK GH +IV VL++
Sbjct: 95 IVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNG 136
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIERA 96
VNA+ G TPLHLAA FGH +IV VL++
Sbjct: 40 VNARDFTGWTPLHLAAHFGHLEIVEVLLKNG 70
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 6/45 (13%)
Query: 55 VEEILEKCPALLLQVNAK---GDTPLHLAAKFGHFDIVRVLIERA 96
+ E+L K A VNAK G TPLHLAA+ GH +IV VL++
Sbjct: 62 IVEVLLKNGA---DVNAKDSLGVTPLHLAARRGHLEIVEVLLKNG 103
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 18/95 (18%)
Query: 197 DQYGWTPIQSTS-------------NIADKDRK----MTALHLAAGKGDARTVERIISEN 239
D GWTP+ + N AD + K +T LHLAA +G VE ++ +N
Sbjct: 44 DFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVE-VLLKN 102
Query: 240 PKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNS 274
D+ G+ LH A H+ + LL+N +
Sbjct: 103 GADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA 137
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 23/144 (15%)
Query: 48 ENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELE 107
EN + V+++LE A ++ G TPLH AA+ GH +IV++L+ + D +
Sbjct: 13 ENGNKDRVKDLLENG-ADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR 71
Query: 108 NRIE-----AFRQMIRMV----------NNEKNTALHEAVSHGNVDLFKLKKTNNLILIF 152
+ +++++++ +++ T LH A +G+ ++ KL L+
Sbjct: 72 TPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKL-------LLS 124
Query: 153 RDSDEKTNILFKFRHLDLFRIQTN 176
+ +D T+ LDL R N
Sbjct: 125 KGADPNTSDSDGRTPLDLAREHGN 148
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIE 94
+ E+L K A + + G TPLHLAA GH +IV VL+E
Sbjct: 62 IVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIERA 96
G TPLHLAAK GH +IV VL++
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHG 70
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 157
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%), Gaps = 6/41 (14%)
Query: 57 EILEKCPALLLQVNAK---GDTPLHLAAKFGHFDIVRVLIE 94
E+L K A VNAK G TPLHLAA+ GH +IV VL++
Sbjct: 52 EVLLKAGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%), Gaps = 6/41 (14%)
Query: 57 EILEKCPALLLQVNAK---GDTPLHLAAKFGHFDIVRVLIE 94
E+L K A VNAK G TPLHLAA+ GH +IV VL++
Sbjct: 85 EVLLKAGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 18/67 (26%)
Query: 69 VNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTAL 128
+N DTPLHLAA GH DIV+ L++ ++ I VN N L
Sbjct: 68 MNRGDDTPLHLAASHGHRDIVQKLLQ------------------YKADINAVNEHGNVPL 109
Query: 129 HEAVSHG 135
H A G
Sbjct: 110 HYACFWG 116
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 18/76 (23%)
Query: 66 LLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKN 125
L Q + G +PLH A + G +V +LI R I ++N +
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGA------------------RINVMNRGDD 73
Query: 126 TALHEAVSHGNVDLFK 141
T LH A SHG+ D+ +
Sbjct: 74 TPLHLAASHGHRDIVQ 89
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 5 FFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPA 64
+AA+AG + + + + + T T LH+ + + E V E+L K A
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIV------EVLLKNGA 63
Query: 65 LLLQVNAKGDTPLHLAAKFGHFDIVRVLIERA 96
+ ++ G TPLHLAA GH +IV VL++
Sbjct: 64 DVNASDSAGITPLHLAAYDGHLEIVEVLLKHG 95
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 211 ADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLL 270
A D +T LHLAA G VE ++ +N D+ G LH A H+ + LL
Sbjct: 34 ATDDNGLTPLHLAAANGQLEIVE-VLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLL 92
Query: 271 ENNSLARSLIDEGDAKGNTPLHVLA 295
++ + + D G TPLH+ A
Sbjct: 93 KHGADVNAY----DRAGWTPLHLAA 113
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERA 96
+ E+L K A + + G TPLHLAA G +IV VL++
Sbjct: 87 IVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHG 128
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 18/67 (26%)
Query: 69 VNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTAL 128
+N DTPLHLAA GH DIV+ L++ ++ I VN N L
Sbjct: 63 MNRGDDTPLHLAASHGHRDIVQKLLQ------------------YKADINAVNEHGNVPL 104
Query: 129 HEAVSHG 135
H A G
Sbjct: 105 HYACFWG 111
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 18/76 (23%)
Query: 66 LLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKN 125
L Q + G +PLH A + G +V +LI R I ++N +
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGA------------------RINVMNRGDD 68
Query: 126 TALHEAVSHGNVDLFK 141
T LH A SHG+ D+ +
Sbjct: 69 TPLHLAASHGHRDIVQ 84
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 157
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%), Gaps = 6/41 (14%)
Query: 57 EILEKCPALLLQVNAK---GDTPLHLAAKFGHFDIVRVLIE 94
E+L K A VNAK G TPLHLAA+ GH +IV VL++
Sbjct: 52 EVLLKAGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%), Gaps = 6/41 (14%)
Query: 57 EILEKCPALLLQVNAK---GDTPLHLAAKFGHFDIVRVLIE 94
E+L K A VNAK G TPLHLAA+ GH +IV VL++
Sbjct: 85 EVLLKAGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 19/22 (86%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIE 94
G TPLHLAA+ GH ++V++L+E
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLE 60
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERA 96
+ E+L K A + V+A G TPLHLAA GH +I VL++
Sbjct: 62 IVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG 103
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIERA 96
VNAK G TPL+LA GH +IV VL++
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLEIVEVLLKNG 70
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 5 FFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPA 64
+AA AG + + + + + T +T LH+ + E V E+L K A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIV------EVLLKYGA 71
Query: 65 LLLQVNAKGDTPLHLAAKFGHFDIVRVLIERA 96
+ + G TPLHLAA GH +IV VL++
Sbjct: 72 DVNAWDNYGATPLHLAADNGHLEIVEVLLKHG 103
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 19/22 (86%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIE 94
G TPLHLAA+ GH ++V++L+E
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLE 78
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERA 96
+ E+L K A + +A G TPLHLAA GH +IV VL++
Sbjct: 95 IVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHG 136
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 211 ADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLL 270
A D+ T LHLAA G VE ++ D GW LH A + H+ + LL
Sbjct: 42 AHDDQGSTPLHLAAWIGHPEIVEVLLKHGADV-NARDTDGWTPLHLAADNGHLEIVEVLL 100
Query: 271 ENNSLARSLIDEGDAKGNTPLHVLA 295
+ + ++ DA G TPLH+ A
Sbjct: 101 KYG----ADVNAQDAYGLTPLHLAA 121
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 72 KGDTPLHLAAKFGHFDIVRVLIERA 96
+G TPLHLAA GH +IV VL++
Sbjct: 46 QGSTPLHLAAWIGHPEIVEVLLKHG 70
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIE 94
+ E+L K A + + G TPLHLAA GH +IV VL++
Sbjct: 62 IVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLK 101
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%), Gaps = 3/29 (10%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIE 94
VNAK G TPLHLAA+ GH +IV VL++
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLK 56
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To
Acrb: Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To
Acrb: Plasticity Of The Interface
Length = 169
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIERA 96
G TPLHLAA FGH +IV VL++
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNG 70
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERA 96
V E+L K A + + G TPLHLAA GH +IV VL++
Sbjct: 95 VVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHG 136
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERA 96
+ E+L K A + ++ G TPLHLAA GH ++V VL++
Sbjct: 62 IVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNG 103
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 18/96 (18%)
Query: 196 TDQYGWTPIQSTSNI-----------------ADKDRKMTALHLAAGKGDARTVERIISE 238
+D GWTP+ + AD +T LHLAA +G VE ++ +
Sbjct: 43 SDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVE-VLLK 101
Query: 239 NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNS 274
N D+ G+ LH A H+ + LL++ +
Sbjct: 102 NGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGA 137
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 234 RIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHV 293
RI+ N D+ GW LH A H+ + LL+N + ++ D+ G TPLH+
Sbjct: 31 RILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNG----ADVNADDSLGVTPLHL 86
Query: 294 LA 295
A
Sbjct: 87 AA 88
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 52 TKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERA 96
TK V+EIL+ + +V+ +G+TPL++A +I + LI+R
Sbjct: 18 TKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIE 94
G TPLHLAA+ GH +IV VL++
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLK 68
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 57 EILEKCPALLLQVNAK---GDTPLHLAAKFGHFDIVRVLIERA 96
EI+E VNA+ G TPLHLAA GH +IV VL++
Sbjct: 61 EIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHG 103
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An
Anti-Ige Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An
Anti-Ige Inhibitor
Length = 135
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIERA 96
G TPLHLAA GH +IV VL++
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNG 70
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERA 96
+ E+L K A + G TPLHLAA H +IV VL++
Sbjct: 62 IVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHG 103
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 32 KAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRV 91
KA +T L+ ++ V F + +E L Q N GDT LH AA G+ DIV++
Sbjct: 104 KAGSTALYWACHGGHKDIVEXLFTQPNIE-----LNQQNKLGDTALHAAAWKGYADIVQL 158
Query: 92 LIERA 96
L+ +
Sbjct: 159 LLAKG 163
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 21/119 (17%)
Query: 70 NAKGDTPLHLAAKFGHFDIVRVLIERA---------------KLAQRGDEELENRIEAFR 114
++ G+T LH + +F +V+ L++ L + ++ IE
Sbjct: 108 DSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVL 167
Query: 115 QMIRMVN-NEK-----NTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRH 167
Q+ R+ N N K TAL AVSHG VD+ K + +D D T ++ H
Sbjct: 168 QLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEH 226
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 15/104 (14%)
Query: 44 SSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGD 103
S+ E + + +++ C AL D P L + VL E +LA R D
Sbjct: 24 SNTEEEIRMELSPDLISACLAL----EKYLDNPNALTERELKVAYTTVLQEWLRLACRSD 79
Query: 104 ---EELENRIEAFRQM--------IRMVNNEKNTALHEAVSHGN 136
E + + FR M + + ++ NTALH +VSH N
Sbjct: 80 AHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHAN 123
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 15/118 (12%)
Query: 69 VNAKGDTPLHLAAKFGHFDIVRVLIERA---------------KLAQRGDEELENRIEAF 113
VN G TPLH AA +I +L+E + A +G+ ++ + + +
Sbjct: 103 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 162
Query: 114 RQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLF 171
+ + + E NT LH A V+ KL + + + +EKT + L L
Sbjct: 163 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLI 220
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 27/123 (21%)
Query: 57 EILEKCPALLLQVNAKGD---TPLHLAAKFGHFDIVRVLIERA----KLAQRGDEEL--- 106
EI+E L + VN K D +PLH+AA G +IV+ L+ + + Q G L
Sbjct: 55 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYA 114
Query: 107 --ENRIEAFRQMIRMVNNE------KNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEK 158
+NR E ++ N + TA+H A + GN+ + +++L ++ S
Sbjct: 115 ASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMI------HILLYYKAS--- 165
Query: 159 TNI 161
TNI
Sbjct: 166 TNI 168
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 15/118 (12%)
Query: 69 VNAKGDTPLHLAAKFGHFDIVRVLIERA---------------KLAQRGDEELENRIEAF 113
VN G TPLH AA +I +L+E + A +G+ ++ + + +
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 161
Query: 114 RQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLF 171
+ + + E NT LH A V+ KL + + + +EKT + L L
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLI 219
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 27/123 (21%)
Query: 57 EILEKCPALLLQVNAKGD---TPLHLAAKFGHFDIVRVLIERA----KLAQRGDEEL--- 106
EI+E L + VN K D +PLH+AA G +IV+ L+ + + Q G L
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYA 113
Query: 107 --ENRIEAFRQMIRMVNNE------KNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEK 158
+NR E ++ N + TA+H A + GN+ + +++L ++ S
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMI------HILLYYKAS--- 164
Query: 159 TNI 161
TNI
Sbjct: 165 TNI 167
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 35 NTILHINII----SSERENVSTKFVEEILEK----CPALLLQ--VNAKGDTPLHLAAKFG 84
NT+LH ++ S E + + +L+ CP + L+ N +G TPL LAAK G
Sbjct: 186 NTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEG 245
Query: 85 HFDIVRVLIER 95
+I R +++R
Sbjct: 246 KIEIFRHILQR 256
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 30 TAKAKNTILHINII----SSERENVSTKFVEEILEK----CPALLLQ--VNAKGDTPLHL 79
T NT+LH ++ S E + + +L+ CP + L+ N +G TPL L
Sbjct: 168 TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKL 227
Query: 80 AAKFGHFDIVRVLIER 95
AAK G +I R +++R
Sbjct: 228 AAKEGKIEIFRHILQR 243
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 22/111 (19%)
Query: 34 KNTILHINIISSERENVSTKFVEEIL-EKC-PALLLQVNAKGDTPLHLAAKFGHFDIVRV 91
+ T LH+ +I+++ E E +L C P L + +G+TPLHLA + G V V
Sbjct: 42 QQTPLHLAVITNQPE-----IAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGV 93
Query: 92 LIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKL 142
L + +++ N +T LH A HG + + +L
Sbjct: 94 LTQSCTTPH------------LHSILKATNYNGHTCLHLASIHGYLGIVEL 132
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 14/60 (23%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAV 132
GDTPLH+A G+ V L+ L Q+G EL+ + NN + T LH AV
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLV---NLFQQGGRELD-----------IYNNLRQTPLHLAV 54
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 15/106 (14%)
Query: 69 VNAKGDTPLHLAAKFGHFDIVRVLIERA---------------KLAQRGDEELENRIEAF 113
VN G TPLH AA +I +L+E + A +G+ ++ + + +
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 114 RQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKT 159
+ + + E NT LH A V+ K T + + +EKT
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKT 207
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 27/123 (21%)
Query: 57 EILEKCPALLLQVNAKGD---TPLHLAAKFGHFDIVRVLIERA----KLAQRGDEELENR 109
EI+E L + VN K D +PLH+AA G +IV+ L+ + + Q G L
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYA 113
Query: 110 IEAFRQMIRMV-----------NNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEK 158
R I ++ ++ TA+H A + GN+ + +++L ++ S
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV------HILLFYKAS--- 164
Query: 159 TNI 161
TNI
Sbjct: 165 TNI 167
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 30 TAKAKNTILH--INIISSERENVS--TKFVEEILEK----CPALLLQ--VNAKGDTPLHL 79
T NT+LH + I + EN++ T + +L+ CP + L+ N + TPL L
Sbjct: 173 TDSQGNTVLHALVXISDNSAENIALVTSXYDGLLQAGARLCPTVQLEDIRNLQDLTPLKL 232
Query: 80 AAKFGHFDIVRVLIER 95
AAK G +I R +++R
Sbjct: 233 AAKEGKIEIFRHILQR 248
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 22/111 (19%)
Query: 34 KNTILHINIISSERENVSTKFVEEIL-EKC-PALLLQVNAKGDTPLHLAAKFGHFDIVRV 91
+ T LH+ +I+++ E E +L C P L + +G+TPLHLA + G V V
Sbjct: 45 QQTPLHLAVITNQPE-----IAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGV 96
Query: 92 LIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKL 142
L + +++ N +T LH A HG + + +L
Sbjct: 97 LTQSCTTPH------------LHSILKATNYNGHTCLHLASIHGYLGIVEL 135
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 15/106 (14%)
Query: 69 VNAKGDTPLHLAAKFGHFDIVRVLIERA---------------KLAQRGDEELENRIEAF 113
VN G TPLH AA +I +L+E + A +G+ ++ + + +
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 114 RQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKT 159
+ + + E NT LH A V+ K T + + +EKT
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKT 207
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 27/123 (21%)
Query: 57 EILEKCPALLLQVNAKGD---TPLHLAAKFGHFDIVRVLIERA----KLAQRGDEELENR 109
EI+E L + VN K D +PLH+AA G +IV+ L+ + + Q G L
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYA 113
Query: 110 IEAFRQMIRMV-----------NNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEK 158
R I ++ ++ TA+H A + GN+ + +++L ++ S
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV------HILLFYKAS--- 164
Query: 159 TNI 161
TNI
Sbjct: 165 TNI 167
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 35 NTILHINIISSERENVSTKFVEE----ILEKCPALLLQVNAK------GDTPLHLAAKFG 84
NT+LH + ++ +TKFV + +L KC L N + G +PL +AAK G
Sbjct: 177 NTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG 236
Query: 85 HFDIVRVLIER 95
I + +I R
Sbjct: 237 KIGIFQHIIRR 247
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 18/99 (18%)
Query: 44 SSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGD 103
+SE E + + + + + +L Q + G+T LHLAA++ D + L+E + A
Sbjct: 29 NSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN--- 85
Query: 104 EELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKL 142
+ +N T LH AVS +F++
Sbjct: 86 ---------------IQDNMGRTPLHAAVSADAQGVFQI 109
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 18/99 (18%)
Query: 44 SSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGD 103
+SE E + + + + + +L Q + G+T LHLAA++ D + L+E + A
Sbjct: 28 NSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN--- 84
Query: 104 EELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKL 142
+ +N T LH AVS +F++
Sbjct: 85 ---------------IQDNMGRTPLHAAVSADAQGVFQI 108
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 35 NTILHINIISSERENVSTKFVEE----ILEKCPALLLQ------VNAKGDTPLHLAAKFG 84
NT+LH + ++ +TKFV + +L KC L +N G +PL +AAK G
Sbjct: 175 NTVLHALVAIADNTRENTKFVTKMYDLLLLKCARLFPDSNLEAVLNNDGLSPLMMAAKTG 234
Query: 85 HFDIVRVLIER 95
I + +I R
Sbjct: 235 KIGIFQHIIRR 245
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 31 AKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAK---GDTPLHLAAKFGHFD 87
AK+ T LH+ + K E+L+ VN K G TPLH AA +G +
Sbjct: 196 AKSGGTALHV---------AAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE 246
Query: 88 IVRVLIE 94
R+L+E
Sbjct: 247 ACRILVE 253
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 18/70 (25%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAV 132
G PLH A +GH+++ +L++ ++ + + K T LHEA
Sbjct: 75 GLVPLHNACSYGHYEVAELLVKHG------------------AVVNVADLWKFTPLHEAA 116
Query: 133 SHGNVDLFKL 142
+ G ++ KL
Sbjct: 117 AKGKYEICKL 126
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 18/70 (25%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAV 132
G PLH A +GH+++ +L++ ++ + + K T LHEA
Sbjct: 79 GLVPLHNACSYGHYEVAELLVKHG------------------AVVNVADLWKFTPLHEAA 120
Query: 133 SHGNVDLFKL 142
+ G ++ KL
Sbjct: 121 AKGKYEICKL 130
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 18/70 (25%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAV 132
G PLH A +GH+++ +L++ ++ + + K T LHEA
Sbjct: 77 GLVPLHNACSYGHYEVAELLVKHGA------------------VVNVADLWKFTPLHEAA 118
Query: 133 SHGNVDLFKL 142
+ G ++ KL
Sbjct: 119 AKGKYEICKL 128
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 72 KGDTPLHLAAKFGHFDIVRVLIE 94
+G+ PLHLAAK GH +V L++
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 72 KGDTPLHLAAKFGHFDIVRVLIE 94
+G+ PLHLAAK GH +V L++
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 72 KGDTPLHLAAKFGHFDIVRVLIE 94
+G+ PLHLAAK GH +V L++
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 70 NAKGDTPLHLAAKFGHFDIVRVLIE 94
N +G+TPL +A+K+G +IV+ L+E
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLE 155
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 72 KGDTPLHLAAKFGHFDIVRVLIE 94
+G+ PLHLAAK GH +V L++
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 72 KGDTPLHLAAKFGHFDIVRVLIE 94
+G+ PLHLAAK GH +V L++
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 35 NTILHINIISSERENVSTKFVE----EIL----EKCPALLLQ--VNAKGDTPLHLAAKFG 84
NT+LH + ++ +TKFV EIL + P L L+ N KG TPL LAA G
Sbjct: 185 NTVLHALVEVADNTVDNTKFVTSXYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSG 244
Query: 85 HFDIVRVLIER 95
++ +++R
Sbjct: 245 KIGVLAYILQR 255
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 68 QVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTA 127
Q A G+T LH+AA + + + VL+E A EL F M + E TA
Sbjct: 32 QRGAMGETALHIAALYDNLEAAMVLMEAAP-------EL-----VFEPMTSEL-YEGQTA 78
Query: 128 LHEAVSHGNVDLFK 141
LH AV + NV+L +
Sbjct: 79 LHIAVINQNVNLVR 92
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 18/112 (16%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFR 114
++E L K L+ + + +G TPL A+ FG + VR L+E +
Sbjct: 18 LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE------------------WG 59
Query: 115 QMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFR 166
++ E+ +AL A + G D+ L ++ + D + T +L+ R
Sbjct: 60 ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVR 111
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 18/98 (18%)
Query: 45 SERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDE 104
SE E + + + + + +L Q + G T LHLAA + D + L+E + A
Sbjct: 29 SEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADAN---- 84
Query: 105 ELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKL 142
+ +N T LH AVS +F++
Sbjct: 85 --------------IQDNMGRTPLHAAVSADAQGVFQI 108
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 70 NAKGDTPLHLAAKFGHFDIVRVLIE 94
+A G +P+H AA+ G D ++VL+E
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVE 97
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 70 NAKGDTPLHLAAKFGHFDIVRVLIE 94
+A G +P+H AA+ G D ++VL+E
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVE 95
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 202 TPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSF 261
TP+ + +D RK T LHLAAG R V+ ++ + D G LH A
Sbjct: 45 TPLNVNCHASD-GRKSTPLHLAAGYNRVRIVQLLLQHGADVHA-KDKGGLVPLHNACSYG 102
Query: 262 HVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAA 296
H LL++ + ++ D TPLH A+
Sbjct: 103 HYEVTELLLKHGACVNAM----DLWQFTPLHEAAS 133
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLI 93
V E+L K A + +++ G T LH AA GH R+L+
Sbjct: 262 VMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL 300
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L
With 2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L
With 2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L
With 2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L
With 2-5a Bound
Length = 337
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 39 HINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLI 93
H+ I + + E+V V+++LE + Q G TPLH A + DIV +L+
Sbjct: 27 HLLIKAVQNEDVD--LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 79
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKN----TAL 128
G P+HLA D+V L+E AK + E L N + R++ + ++ K+ TAL
Sbjct: 84 GQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDE-REVNEIGSHVKHCKGQTAL 142
Query: 129 HEAVSHG 135
H V G
Sbjct: 143 HWCVGLG 149
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIE 94
+ + + + +L Q + G+T LHLAA++ D + L+E
Sbjct: 4 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE 43
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 39 HINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLI 93
H+ I + + E+V V+++LE + Q G TPLH A + DIV +L+
Sbjct: 7 HLLIKAVQNEDVD--LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To
1.55a Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To
1.55a Resolution
Length = 223
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 54 FVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIE 94
+ + + + +L Q + G+T LHLAA++ D + L+E
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,752,314
Number of Sequences: 62578
Number of extensions: 284688
Number of successful extensions: 1192
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 844
Number of HSP's gapped (non-prelim): 292
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)