Query 043678
Match_columns 303
No_of_seqs 200 out of 2390
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 12:19:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043678.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043678hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 1.2E-45 4E-50 313.2 18.9 287 2-300 15-390 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 1.5E-45 5.2E-50 312.5 19.3 264 24-299 4-323 (437)
3 1wdy_A 2-5A-dependent ribonucl 100.0 9.1E-44 3.1E-48 284.9 18.2 248 2-302 6-268 (285)
4 3utm_A Tankyrase-1; tankyrase, 100.0 3.7E-43 1.3E-47 289.6 18.1 265 2-296 25-322 (351)
5 1yyh_A HN1;, notch 1, ankyrin 100.0 1.9E-42 6.6E-47 272.3 14.3 214 2-302 11-238 (253)
6 4g8k_A 2-5A-dependent ribonucl 100.0 7.6E-42 2.6E-46 280.2 17.5 258 2-302 26-316 (337)
7 3d9h_A CDNA FLJ77766, highly s 100.0 7.8E-42 2.7E-46 273.3 15.8 239 2-297 16-265 (285)
8 2fo1_E LIN-12 protein; beta-ba 100.0 3.6E-42 1.2E-46 285.4 12.6 259 2-302 95-361 (373)
9 2xai_A ASB-9, ankyrin repeat a 100.0 4.3E-42 1.5E-46 271.5 11.9 244 2-300 4-251 (261)
10 4b93_B Ankyrin repeat domain-c 100.0 5.9E-42 2E-46 270.9 12.0 209 3-299 13-230 (269)
11 2dzn_A Probable 26S proteasome 100.0 1.4E-41 4.9E-46 263.4 13.1 214 2-300 3-221 (228)
12 3b7b_A Euchromatic histone-lys 100.0 2.8E-41 9.4E-46 263.3 14.2 211 2-300 12-223 (237)
13 1oy3_D Transcription factor in 100.0 2.4E-41 8.2E-46 270.5 14.1 230 2-300 10-271 (282)
14 3aji_A 26S proteasome non-ATPa 100.0 2.4E-41 8.3E-46 262.6 13.7 212 2-301 7-219 (231)
15 1k1a_A B-cell lymphoma 3-encod 100.0 1.6E-41 5.4E-46 265.4 12.4 217 2-302 10-231 (241)
16 1s70_B 130 kDa myosin-binding 100.0 1.1E-41 3.8E-46 274.7 11.1 234 2-297 41-275 (299)
17 3ljn_A Hypothetical protein; a 100.0 1.7E-40 5.7E-45 275.1 13.4 264 2-299 21-301 (364)
18 2xai_A ASB-9, ankyrin repeat a 100.0 2.6E-39 9.1E-44 255.5 15.9 209 33-298 2-210 (261)
19 1wdy_A 2-5A-dependent ribonucl 100.0 6E-39 2E-43 256.8 17.7 243 2-285 40-284 (285)
20 3utm_A Tankyrase-1; tankyrase, 100.0 2.4E-39 8.1E-44 266.8 14.1 246 19-302 9-295 (351)
21 3ljn_A Hypothetical protein; a 100.0 8.2E-39 2.8E-43 264.9 12.7 224 25-302 11-259 (364)
22 2f8y_A Notch homolog 1, transl 100.0 6.8E-39 2.3E-43 247.5 11.2 204 11-301 1-205 (223)
23 4g8k_A 2-5A-dependent ribonucl 100.0 5.4E-38 1.8E-42 257.3 16.5 252 2-283 60-330 (337)
24 3d9h_A CDNA FLJ77766, highly s 100.0 2.2E-38 7.5E-43 253.2 13.1 216 2-272 60-275 (285)
25 2fo1_E LIN-12 protein; beta-ba 100.0 5.5E-38 1.9E-42 260.3 13.9 225 2-273 126-369 (373)
26 3eu9_A Huntingtin-interacting 100.0 2E-37 6.9E-42 241.8 15.4 225 2-275 10-235 (240)
27 2rfa_A Transient receptor pote 100.0 2.9E-37 1E-41 239.8 14.9 205 33-302 2-212 (232)
28 1oy3_D Transcription factor in 100.0 1.5E-37 5E-42 248.5 13.2 229 29-302 4-240 (282)
29 3kea_A K1L; tropism, ANK repea 100.0 1.7E-37 5.7E-42 248.1 13.3 191 3-284 33-225 (285)
30 1ikn_D Protein (I-kappa-B-alph 100.0 2.9E-38 1E-42 246.0 5.0 216 2-298 9-230 (236)
31 2rfa_A Transient receptor pote 100.0 2E-36 6.7E-41 235.1 14.7 202 2-273 4-220 (232)
32 2f8y_A Notch homolog 1, transl 100.0 5.3E-36 1.8E-40 231.2 15.6 189 2-274 26-215 (223)
33 1yyh_A HN1;, notch 1, ankyrin 100.0 4E-36 1.4E-40 236.3 13.9 187 2-272 58-245 (253)
34 3kea_A K1L; tropism, ANK repea 100.0 1.4E-36 4.9E-41 242.7 11.2 202 9-302 7-210 (285)
35 1k1a_A B-cell lymphoma 3-encod 100.0 8.4E-36 2.9E-40 232.9 15.3 194 29-302 4-198 (241)
36 3eu9_A Huntingtin-interacting 100.0 7.4E-36 2.5E-40 232.9 14.8 218 31-302 6-225 (240)
37 2etb_A Transient receptor pote 100.0 5.9E-36 2E-40 235.8 12.4 210 33-302 1-236 (256)
38 1ikn_D Protein (I-kappa-B-alph 100.0 4.9E-37 1.7E-41 239.1 5.3 195 30-302 4-199 (236)
39 2pnn_A Transient receptor pote 100.0 1.1E-35 3.8E-40 236.5 13.0 218 2-292 14-272 (273)
40 3aji_A 26S proteasome non-ATPa 100.0 7.4E-36 2.5E-40 231.7 11.6 187 2-272 41-227 (231)
41 4gpm_A Engineered protein OR26 100.0 1E-35 3.4E-40 218.2 11.4 158 2-242 5-162 (169)
42 3b7b_A Euchromatic histone-lys 100.0 2.2E-35 7.5E-40 229.9 13.9 186 29-302 6-192 (237)
43 3hra_A Ankyrin repeat family p 100.0 2.9E-35 9.9E-40 223.4 14.1 186 3-272 7-200 (201)
44 2etb_A Transient receptor pote 100.0 1.6E-35 5.5E-40 233.3 12.8 203 2-274 3-245 (256)
45 2dzn_A Probable 26S proteasome 100.0 7.4E-35 2.5E-39 225.6 16.1 186 34-302 2-189 (228)
46 2pnn_A Transient receptor pote 100.0 3.8E-35 1.3E-39 233.3 14.7 215 29-302 8-248 (273)
47 1sw6_A Regulatory protein SWI6 100.0 4.1E-36 1.4E-40 244.6 8.4 243 12-298 58-327 (327)
48 3hra_A Ankyrin repeat family p 100.0 1.5E-34 5.2E-39 219.5 15.1 183 33-302 4-193 (201)
49 4b93_B Ankyrin repeat domain-c 100.0 9.1E-36 3.1E-40 235.5 7.9 176 3-262 54-230 (269)
50 3jxi_A Vanilloid receptor-rela 100.0 5.9E-35 2E-39 230.7 12.0 211 33-302 4-240 (260)
51 4gpm_A Engineered protein OR26 100.0 2.3E-34 7.8E-39 211.0 14.0 159 36-282 6-164 (169)
52 3jxi_A Vanilloid receptor-rela 100.0 1.9E-34 6.6E-39 227.7 11.1 194 2-274 6-249 (260)
53 1s70_B 130 kDa myosin-binding 100.0 3.4E-34 1.2E-38 230.9 8.3 235 7-302 4-247 (299)
54 4hbd_A KN motif and ankyrin re 100.0 3.3E-33 1.1E-37 222.0 11.6 184 34-302 76-265 (276)
55 1sw6_A Regulatory protein SWI6 100.0 3.3E-34 1.1E-38 233.4 5.9 198 5-261 101-327 (327)
56 4hbd_A KN motif and ankyrin re 100.0 9.6E-33 3.3E-37 219.4 11.7 186 3-272 78-272 (276)
57 3v30_A DNA-binding protein rfx 100.0 5.5E-32 1.9E-36 200.2 14.5 170 34-290 2-171 (172)
58 2rfm_A Putative ankyrin repeat 100.0 1.1E-31 3.7E-36 202.2 14.6 160 29-272 30-189 (192)
59 2vge_A RELA-associated inhibit 100.0 6.3E-35 2.2E-39 225.3 -3.5 196 17-302 1-203 (229)
60 3v31_A Ankyrin repeat family A 100.0 2.9E-31 1E-35 195.3 12.8 158 33-274 2-159 (167)
61 2rfm_A Putative ankyrin repeat 100.0 2.2E-31 7.4E-36 200.5 11.9 157 64-302 26-182 (192)
62 3v30_A DNA-binding protein rfx 100.0 1.1E-31 3.9E-36 198.5 9.3 168 2-253 3-171 (172)
63 1ihb_A P18-INK4C(INK6), cyclin 100.0 2.4E-31 8.3E-36 194.7 10.9 157 2-241 6-162 (162)
64 1ihb_A P18-INK4C(INK6), cyclin 100.0 3.1E-31 1.1E-35 194.2 9.9 156 34-273 5-160 (162)
65 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.8E-30 6E-35 191.4 13.8 157 32-272 12-168 (169)
66 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.3E-30 4.5E-35 192.1 12.1 155 2-239 15-169 (169)
67 2vge_A RELA-associated inhibit 100.0 6.9E-33 2.4E-37 213.9 -1.0 183 3-271 23-209 (229)
68 3v31_A Ankyrin repeat family A 100.0 1.8E-30 6E-35 191.1 10.8 158 2-242 4-161 (167)
69 1awc_B Protein (GA binding pro 100.0 4.6E-30 1.6E-34 186.0 10.8 150 35-269 3-152 (153)
70 1ycs_B 53BP2, P53BP2; ankyrin 100.0 3.5E-32 1.2E-36 211.8 -0.7 206 2-297 6-228 (239)
71 3f6q_A Integrin-linked protein 100.0 5.1E-30 1.8E-34 190.8 10.8 168 33-287 4-171 (179)
72 2aja_A Ankyrin repeat family p 100.0 2.7E-31 9.4E-36 218.2 3.2 249 3-302 94-364 (376)
73 1awc_B Protein (GA binding pro 100.0 7.1E-30 2.4E-34 185.0 9.4 150 2-235 3-152 (153)
74 1bd8_A P19INK4D CDK4/6 inhibit 100.0 2E-29 6.9E-34 183.3 10.8 154 34-272 2-155 (156)
75 3f6q_A Integrin-linked protein 100.0 1.2E-29 4E-34 188.8 9.2 164 2-249 6-170 (179)
76 1ycs_B 53BP2, P53BP2; ankyrin 100.0 3.7E-30 1.3E-34 200.3 6.6 178 33-299 4-193 (239)
77 3twr_A Tankyrase-2; ankyrin re 100.0 5.6E-30 1.9E-34 188.0 7.0 158 31-272 5-162 (165)
78 3twr_A Tankyrase-2; ankyrin re 100.0 1.4E-29 4.7E-34 185.9 8.9 155 2-240 9-164 (165)
79 3t8k_A Uncharacterized protein 100.0 3.5E-29 1.2E-33 186.4 6.7 159 3-274 8-178 (186)
80 1bd8_A P19INK4D CDK4/6 inhibit 100.0 2.2E-28 7.5E-33 177.8 10.7 147 73-302 2-148 (156)
81 2aja_A Ankyrin repeat family p 99.9 1.5E-29 5.1E-34 207.9 0.0 197 4-302 68-269 (376)
82 1bi7_B P16INK4A, MTS1, multipl 99.9 9.3E-28 3.2E-32 174.4 8.0 145 67-294 6-151 (156)
83 1bi7_B P16INK4A, MTS1, multipl 99.9 2E-27 6.8E-32 172.6 7.3 136 2-162 13-149 (156)
84 1d9s_A Cyclin-dependent kinase 99.9 2.2E-27 7.5E-32 168.3 6.9 123 2-149 13-136 (136)
85 1d9s_A Cyclin-dependent kinase 99.9 5.4E-27 1.8E-31 166.3 8.8 132 63-272 2-133 (136)
86 2jab_A H10-2-G3; HER2, darpin, 99.9 8.9E-27 3E-31 165.1 8.7 122 2-147 15-136 (136)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 5.3E-26 1.8E-30 159.0 8.6 124 2-149 3-126 (126)
88 3t8k_A Uncharacterized protein 99.9 2.8E-26 9.5E-31 170.7 6.3 149 73-301 6-168 (186)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 3.4E-25 1.2E-29 156.9 9.9 126 69-272 10-135 (136)
90 3ui2_A Signal recognition part 99.9 4.4E-27 1.5E-31 183.4 -0.9 166 5-241 19-185 (244)
91 1n0r_A 4ANK, 4 ankyrin repeats 99.9 8.2E-25 2.8E-29 152.9 10.7 126 33-241 1-126 (126)
92 3c5r_A BARD-1, BRCA1-associate 99.9 2.9E-25 9.9E-30 157.6 5.6 124 68-269 5-128 (137)
93 3deo_A Signal recognition part 99.9 6E-25 2E-29 163.8 7.5 138 33-238 43-181 (183)
94 2b0o_E UPLC1; arfgap, structur 99.9 3.3E-25 1.1E-29 177.6 5.6 122 3-148 153-283 (301)
95 3ui2_A Signal recognition part 99.9 1.2E-25 4.2E-30 175.2 2.5 160 33-301 14-174 (244)
96 3deo_A Signal recognition part 99.9 7.4E-26 2.5E-30 168.7 0.8 133 69-301 40-173 (183)
97 3aaa_C Myotrophin, protein V-1 99.9 3.9E-25 1.3E-29 153.9 4.4 114 2-139 8-121 (123)
98 3c5r_A BARD-1, BRCA1-associate 99.9 2.6E-25 8.9E-30 157.8 3.0 122 2-147 11-132 (137)
99 2b0o_E UPLC1; arfgap, structur 99.9 8.5E-24 2.9E-28 169.4 10.1 147 72-300 150-299 (301)
100 3ehr_A Osteoclast-stimulating 99.9 8E-25 2.7E-29 168.4 3.8 134 2-159 74-208 (222)
101 3ehr_A Osteoclast-stimulating 99.9 5.8E-24 2E-28 163.5 7.2 140 67-288 67-207 (222)
102 3aaa_C Myotrophin, protein V-1 99.9 1.7E-23 5.7E-28 145.5 7.1 60 71-148 5-64 (123)
103 1n0q_A 3ANK, 3 ankyrin repeats 99.9 1.4E-22 4.8E-27 133.5 8.0 93 33-149 1-93 (93)
104 1dcq_A PYK2-associated protein 99.9 8E-23 2.7E-27 162.0 7.4 123 3-149 132-263 (278)
105 3lvq_E ARF-GAP with SH3 domain 99.9 9.5E-23 3.3E-27 174.8 6.7 130 3-154 134-270 (497)
106 3jue_A Arfgap with coiled-coil 99.9 1.9E-22 6.4E-27 165.1 7.2 122 3-148 201-325 (368)
107 3jue_A Arfgap with coiled-coil 99.9 7.8E-22 2.7E-26 161.5 9.4 149 71-298 197-348 (368)
108 1n0q_A 3ANK, 3 ankyrin repeats 99.9 4.2E-22 1.4E-26 131.2 5.5 90 2-97 3-92 (93)
109 3lvq_E ARF-GAP with SH3 domain 99.8 6.5E-21 2.2E-25 163.4 10.4 135 35-259 133-276 (497)
110 2l6b_A NR1C; ankyrin, consensu 99.8 1.5E-21 5E-26 134.0 3.3 108 29-160 4-111 (115)
111 1dcq_A PYK2-associated protein 99.8 2.8E-20 9.6E-25 147.4 10.2 125 35-242 131-264 (278)
112 2l6b_A NR1C; ankyrin, consensu 99.8 1.9E-20 6.6E-25 128.4 7.5 109 119-291 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.8 2.9E-19 1E-23 121.3 6.0 90 30-143 20-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 3.1E-18 1E-22 116.2 6.1 85 2-92 25-109 (110)
115 1gp8_A Protein (scaffolding pr 62.3 2.6 8.9E-05 21.1 0.7 16 5-20 17-32 (40)
116 3zrh_A Ubiquitin thioesterase 34.0 61 0.0021 26.6 4.7 48 225-272 31-91 (454)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-45 Score=313.23 Aligned_cols=287 Identities=19% Similarity=0.191 Sum_probs=173.6
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||.|+..|+.++|++|+++|++....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+
T Consensus 15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMA--ARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHH--HHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHH
Confidence 3788888888888888888888776666666688888888 88888888888887 57777788888888888888
Q ss_pred HhCCHHHHHHHHHHhHHhhcCch---------------HHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhC
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDE---------------ELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTN 146 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~ 146 (303)
..|+.+++++|+++|++++..+. +....+.......+..+..|.||||+|+..|+.+++++|++.
T Consensus 89 ~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 168 (437)
T 1n11_A 89 RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER 168 (437)
T ss_dssp HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 88888888888888776543222 233333333344444555566666666666666666666655
Q ss_pred CcceeeecccccchhhhhhccchhH---------------------Hhhhh---hHHHHHHHHHHhccchhchhhhcCCC
Q 043678 147 NLILIFRDSDEKTNILFKFRHLDLF---------------------RIQTN---SIYAALPKLLEKKKNLIKETDQYGWT 202 (303)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~---~~~~~~~~ll~~~~~~~~~~~~~g~t 202 (303)
+++++..+..+.++++.+....... +++.+ ...++++.|++.+.. ++..+..|.|
T Consensus 169 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t 247 (437)
T 1n11_A 169 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVT 247 (437)
T ss_dssp TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCC
Confidence 5555555555555554443221111 01111 113445555544443 3444444444
Q ss_pred ccc---------------------------------cccc-----------------ccccCCcccHHhHHHhcCCHHHH
Q 043678 203 PIQ---------------------------------STSN-----------------IADKDRKMTALHLAAGKGDARTV 232 (303)
Q Consensus 203 ~l~---------------------------------~~~~-----------------~~~~~~~~t~L~~a~~~~~~~~v 232 (303)
||+ .++. ......|.||||+|+..|+.+++
T Consensus 248 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v 327 (437)
T 1n11_A 248 PLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV 327 (437)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHH
T ss_pred HHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHH
Confidence 444 3331 01123456666666666666666
Q ss_pred HHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCC
Q 043678 233 ERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPK 300 (303)
Q Consensus 233 ~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~ 300 (303)
++|+++|++ ++.+|..|+||||+|++.|+.+++++|++ .|++++.+|.+|+|||++|++.|+.
T Consensus 328 ~~Ll~~gad-~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~----~ga~~~~~~~~g~t~l~~A~~~g~~ 390 (437)
T 1n11_A 328 KFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLK----NGASPNEVSSDGTTPLAIAKRLGYI 390 (437)
T ss_dssp HHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCSCCCCSSSCCHHHHHHHTTCH
T ss_pred HHHHhcCCC-CCCCCCCCCCHHHHHHHCChHHHHHHHHH----CcCCCCCCCCCCCCHHHHHHHcCcH
Confidence 666666666 35566666666666666666655555555 3555666666666666666666654
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-45 Score=312.54 Aligned_cols=264 Identities=21% Similarity=0.203 Sum_probs=181.2
Q ss_pred HHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCc
Q 043678 24 VIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGD 103 (303)
Q Consensus 24 ~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~ 103 (303)
|++....+..|.||||+| +..|+.+++++|++ .|.+++..+..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 4 g~~~~~~~~~g~t~L~~A--a~~g~~~~v~~Ll~----~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~ 77 (437)
T 1n11_A 4 GISGGGGGESGLTPLHVA--SFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 77 (437)
T ss_dssp -----------CCHHHHH--HHHTCHHHHHHHHH----TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCC
T ss_pred CCCccccCCCCCCHHHHH--HHCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Confidence 555556677799999999 99999999999999 799999999999999999999999999999999998765332
Q ss_pred ---------------hHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccc
Q 043678 104 ---------------EELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHL 168 (303)
Q Consensus 104 ---------------~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (303)
.++.+.+...++.++..+..|.||||+|+..|+.+++++|++.+.+....+..+.++++.+....
T Consensus 78 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g 157 (437)
T 1n11_A 78 KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYG 157 (437)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcC
Confidence 24666677777888999999999999999999999999999999999888999999988876443
Q ss_pred hhHH---------------------hhhh---hHHHHHHHHHHhccchhchhhhcCCCcccccccc--------------
Q 043678 169 DLFR---------------------IQTN---SIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNI-------------- 210 (303)
Q Consensus 169 ~~~~---------------------~~~~---~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~-------------- 210 (303)
.... ++.+ ...+++++|+..+.. ++..+..|.|||++++..
T Consensus 158 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 236 (437)
T 1n11_A 158 KVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236 (437)
T ss_dssp CHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 3211 1222 226777888877766 666777888888876511
Q ss_pred ---cccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCC
Q 043678 211 ---ADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKG 287 (303)
Q Consensus 211 ---~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g 287 (303)
.....|.||||+|+..|+.+++++|+++|++ .+..+..|+||||+|++.|+.+++++|++. |++++.+|..|
T Consensus 237 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g 311 (437)
T 1n11_A 237 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKH----GVMVDATTRMG 311 (437)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHH----TCCTTCCCSSC
T ss_pred CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC----CccCCCCCCCC
Confidence 1123455666666666666666666666555 244555555555555555554444444442 33344444444
Q ss_pred CcHHHHHHhcCC
Q 043678 288 NTPLHVLAAVRP 299 (303)
Q Consensus 288 ~tpL~~A~~~~~ 299 (303)
+||||+|+..|+
T Consensus 312 ~t~L~~A~~~g~ 323 (437)
T 1n11_A 312 YTPLHVASHYGN 323 (437)
T ss_dssp CCHHHHHHHSSC
T ss_pred CCHHHHHHHcCc
Confidence 444444444443
No 3
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=9.1e-44 Score=284.87 Aligned_cols=248 Identities=19% Similarity=0.192 Sum_probs=217.7
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhh-cccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLT-AKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A 80 (303)
.+||+.|+..|+.+++++|+++|++.... +..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 79 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA--VQMSREDIVELLLR----HGADPVLRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHH--HHcCCHHHHHHHHH----cCCCCcccCCCCCCHHHHH
Confidence 47999999999999999999998876644 66699999999 99999999999999 7999999999999999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeee-------
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFR------- 153 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~------- 153 (303)
+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.|+++...
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~ 141 (285)
T 1wdy_A 80 AIAGSVKLLKLFLSKGADV------------------NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ 141 (285)
T ss_dssp HHHTCHHHHHHHHHTTCCT------------------TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHH
T ss_pred HHcCCHHHHHHHHHcCCCC------------------CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHH
Confidence 9999999999999998874 478899999999999999999999999999988776
Q ss_pred ---cccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCC--
Q 043678 154 ---DSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGD-- 228 (303)
Q Consensus 154 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~-- 228 (303)
+..+.++++.+.... ..+++++|++..+..++..+..| .||||+|+..++
T Consensus 142 ~~~~~~g~t~L~~A~~~~---------~~~~v~~Ll~~~~~~~~~~~~~g----------------~t~l~~a~~~~~~~ 196 (285)
T 1wdy_A 142 ERLRKGGATALMDAAEKG---------HVEVLKILLDEMGADVNACDNMG----------------RNALIHALLSSDDS 196 (285)
T ss_dssp HHTTCCCCCHHHHHHHHT---------CHHHHHHHHHTSCCCTTCCCTTS----------------CCHHHHHHHCSCTT
T ss_pred HhhccCCCcHHHHHHHcC---------CHHHHHHHHHhcCCCCCccCCCC----------------CCHHHHHHHccccc
Confidence 566777777766433 26899999988444466666555 466999999998
Q ss_pred --HHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 229 --ARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 229 --~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
.+++++|+++|++ ++.+|..|+||||+|++.|+.+++++|++. .|++++.+|..|+||||+|++.++.++
T Consensus 197 ~~~~i~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~l~~A~~~~~~~i 268 (285)
T 1wdy_A 197 DVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLAVELKLKKI 268 (285)
T ss_dssp THHHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhc---cCCCccccCCCCCcHHHHHHHcCcHHH
Confidence 8999999999999 588999999999999999999999998884 578899999999999999999988664
No 4
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=3.7e-43 Score=289.56 Aligned_cols=265 Identities=20% Similarity=0.191 Sum_probs=223.0
Q ss_pred ChhHHHHHhcCCChhHHHHHHH-HHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARD-VIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A 80 (303)
.++|+.|+..|+.+.|+.++.. +.+....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|
T Consensus 25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 98 (351)
T 3utm_A 25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA--AGYNRVRIVQLLLQ----HGADVHAKDKGGLVPLHNA 98 (351)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCccCCCCCcHHHHH
Confidence 3799999999999999999987 676667777799999999 99999999999999 7999999999999999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++.|+++...+..+.++
T Consensus 99 ~~~g~~~iv~~Ll~~g~~~~------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~ 160 (351)
T 3utm_A 99 CSYGHYEVTELLLKHGACVN------------------AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSA 160 (351)
T ss_dssp HHTTCHHHHHHHHHTTCCTT------------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred HHCCCHHHHHHHHHCCCCCC------------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcc
Confidence 99999999999999988754 788999999999999999999999999999999999999998
Q ss_pred hhhhhccchhHHh------------hhhhHHHHHHHHHHhccchhchhhhcCCCcccccccc------------------
Q 043678 161 ILFKFRHLDLFRI------------QTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNI------------------ 210 (303)
Q Consensus 161 ~~~~~~~~~~~~~------------~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~------------------ 210 (303)
+..+......... ......+.+..++..... ....+..|.||+|.++..
T Consensus 161 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~ 239 (351)
T 3utm_A 161 VDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN 239 (351)
T ss_dssp HHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC
T ss_pred hHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC
Confidence 8776533221111 111114445555544433 334567788998876522
Q ss_pred --cccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCC
Q 043678 211 --ADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGN 288 (303)
Q Consensus 211 --~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~ 288 (303)
..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+
T Consensus 240 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~----~gad~~~~~~~g~ 314 (351)
T 3utm_A 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLLS----YGSDPSIISLQGF 314 (351)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSC
T ss_pred cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHH----cCCCCCCcCCCCC
Confidence 1235789999999999999999999999999 58999999999999999999999998888 5788999999999
Q ss_pred cHHHHHHh
Q 043678 289 TPLHVLAA 296 (303)
Q Consensus 289 tpL~~A~~ 296 (303)
||+++|..
T Consensus 315 tal~~a~~ 322 (351)
T 3utm_A 315 TAAQMGNE 322 (351)
T ss_dssp CHHHHSCH
T ss_pred ChhhhhhH
Confidence 99999854
No 5
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.9e-42 Score=272.31 Aligned_cols=214 Identities=17% Similarity=0.133 Sum_probs=165.4
Q ss_pred ChhHHHHHhcC-------------CChhHHHHHHHHHHhh-hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhh
Q 043678 2 DLNFFKAASAG-------------NSEPFKDMARDVIESL-LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLL 67 (303)
Q Consensus 2 ~~~L~~A~~~g-------------~~~~v~~ll~~~~~~~-~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~ 67 (303)
.||||.|+..| +.+++++|+++|.+.. ..+..|.||||+| +..|+.+++++|++ .|.+++
T Consensus 11 ~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~ 84 (253)
T 1yyh_A 11 FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA--ARYSRSDAAKRLLE----ASADAN 84 (253)
T ss_dssp -----------------------------------------CCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTT
T ss_pred CcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHH--HHcCCHHHHHHHHH----cCCCCC
Confidence 48999999987 8999999999988765 3467799999999 99999999999999 799999
Q ss_pred ccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCC
Q 043678 68 QVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNN 147 (303)
Q Consensus 68 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~ 147 (303)
.++..|.||||+|+..|+.+++++|++.++.. ++..+..|.||||+|+..++.+++++|++.|
T Consensus 85 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 147 (253)
T 1yyh_A 85 IQDNMGRTPLHAAVSADAQGVFQILIRNRATD-----------------LDARMHDGTTPLILAARLAVEGMLEDLINSH 147 (253)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSC-----------------TTCCCTTCCCHHHHHHHHTCSSHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------------ccccCCCCCcHHHHHHHcChHHHHHHHHHcC
Confidence 99999999999999999999999999987621 4578899999999999999999999988777
Q ss_pred cceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcC
Q 043678 148 LILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKG 227 (303)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~ 227 (303)
+++ +..+. .|.||||+|+..|
T Consensus 148 ~~~-------------------------------------------~~~d~----------------~g~t~L~~A~~~~ 168 (253)
T 1yyh_A 148 ADV-------------------------------------------NAVDD----------------LGKSALHWAAAVN 168 (253)
T ss_dssp CCT-------------------------------------------TCBCT----------------TSCBHHHHHHHHT
T ss_pred CCC-------------------------------------------CCcCC----------------CCCCHHHHHHHcC
Confidence 652 23333 3457799999999
Q ss_pred CHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 228 DARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 228 ~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
+.+++++|+++|++ ++.+|..|+||||+|++.|+.+++++|++ .|++++.+|..|+||||+|++.|+.||
T Consensus 169 ~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~----~ga~~~~~d~~g~tpl~~A~~~g~~~i 238 (253)
T 1yyh_A 169 NVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLD----HFANRDITDHMDRLPRDIAQERMHHDI 238 (253)
T ss_dssp CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHH----cCCCccccccCCCCHHHHHHHcCCHHH
Confidence 99999999999999 58899999999999999999988888888 478899999999999999999998775
No 6
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=7.6e-42 Score=280.18 Aligned_cols=258 Identities=16% Similarity=0.104 Sum_probs=220.2
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhc-ccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTA-KAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A 80 (303)
+|+|+.||..|+.++|++|+++|++++..+ ..|.||||+| +..|+.+++++|++ .|++++.++..+.+|++.+
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A--~~~g~~~iv~~Ll~----~ga~~~~~~~~~~~~~~~~ 99 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA--VQMSREDIVELLLR----HGADPVLRKKNGATPFILA 99 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHH--HHcCCHHHHHHHHH----cCCchhhhccCCCchhHHH
Confidence 379999999999999999999999887554 4599999999 99999999999999 8999999999999999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeee-------
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFR------- 153 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~------- 153 (303)
+..+...++..+++.++++ +..|..|.||+|+|+..|+.+++++|++.|+++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~------------------~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~ 161 (337)
T 4g8k_A 100 AIAGSVKLLKLFLSKGADV------------------NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ 161 (337)
T ss_dssp HHHTCHHHHHHHHTTTCCT------------------TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC---
T ss_pred HhcccchhhHHhhhccchh------------------hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcccccc
Confidence 9999999999999988764 488999999999999999999999999988875543
Q ss_pred ---cccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCccccccc---------------------
Q 043678 154 ---DSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSN--------------------- 209 (303)
Q Consensus 154 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~--------------------- 209 (303)
+..|.++++.+.... ..++++.|+.+.+..++..+..|.|+++.++.
T Consensus 162 ~~~~~~g~T~L~~A~~~g---------~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~ 232 (337)
T 4g8k_A 162 ERLRKGGATALMDAAEKG---------HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV 232 (337)
T ss_dssp --CTTCSCCHHHHHHHHT---------CHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT
T ss_pred ccccCCCCcHHHHHHHCC---------CHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC
Confidence 334566776665332 36899999987666689999999999875431
Q ss_pred ccccCCcccHHhHHHhcCCHHHHHHHhhc-CCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCC
Q 043678 210 IADKDRKMTALHLAAGKGDARTVERIISE-NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGN 288 (303)
Q Consensus 210 ~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~ 288 (303)
......|.||||+|+..|+.++++.|++. |++ ++.+|..|+||||+|++.|+.+++++|++ .|++++. .
T Consensus 233 n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~-vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~----~GAd~n~-----~ 302 (337)
T 4g8k_A 233 NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCK----RGASTDC-----G 302 (337)
T ss_dssp TCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHT----TSCSSTT-----C
T ss_pred CCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCC-----C
Confidence 11235789999999999999999999986 566 69999999999999999999999999888 4676664 4
Q ss_pred cHHHHHHhcCCCCC
Q 043678 289 TPLHVLAAVRPKEF 302 (303)
Q Consensus 289 tpL~~A~~~~~~~i 302 (303)
+|||+|++.++.++
T Consensus 303 ~~L~~A~~~~~~~i 316 (337)
T 4g8k_A 303 DLVMTARRNYDHSL 316 (337)
T ss_dssp CHHHHHHHTTCHHH
T ss_pred CHHHHHHHcCCHHH
Confidence 69999999998664
No 7
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.8e-42 Score=273.25 Aligned_cols=239 Identities=16% Similarity=0.112 Sum_probs=186.6
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHH-----------hhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccc
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIE-----------SLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVN 70 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~-----------~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~ 70 (303)
.|+||+|+..|+.+.+..++..+.. ....+..|.||||+| +..|+.+++++|++ .|.+++.++
T Consensus 16 ~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~A--a~~g~~~~v~~Ll~----~g~~~~~~~ 89 (285)
T 3d9h_A 16 PRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEA--AIHGHQLSLRNLIS----QGWAVNIIT 89 (285)
T ss_dssp --------------------------CCSEECCCCTTCSSSCCSCCHHHHH--HHTTCHHHHHHHHH----TTCCSCEEC
T ss_pred HHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHH--HHcCCHHHHHHHHH----CCCCCCCcC
Confidence 5899999999998888887665322 124566799999999 99999999999999 799999999
Q ss_pred cCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcce
Q 043678 71 AKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLIL 150 (303)
Q Consensus 71 ~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~ 150 (303)
..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.++++
T Consensus 90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 151 (285)
T 3d9h_A 90 ADHVSPLHEACLGGHLSCVKILLKHGAQV------------------NGVTADWHTPLFNACVSGSWDCVNLLLQHGASV 151 (285)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCS------------------SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHHCCCCC------------------CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC
Confidence 99999999999999999999999998774 488999999999999999999999999999887
Q ss_pred eeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHH
Q 043678 151 IFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDAR 230 (303)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~ 230 (303)
...+ .+.++++.+..... .+++++|++.+.+ ++..+.. |.||||+|+..|+.+
T Consensus 152 ~~~~-~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~-~~~~d~~----------------g~t~L~~A~~~~~~~ 204 (285)
T 3d9h_A 152 QPES-DLASPIHEAARRGH---------VECVNSLIAYGGN-IDHKISH----------------LGTPLYLACENQQRA 204 (285)
T ss_dssp SCSC-TTSCHHHHHHHHTC---------HHHHHHHHHTTCC-TTCCBTT----------------TBCHHHHHHHTTCHH
T ss_pred CCCC-CCCCHHHHHHHcCC---------HHHHHHHHHCCCC-CCCcCCC----------------CCCHHHHHHHcCcHH
Confidence 6544 47888877764433 6889999988776 5555544 456699999999999
Q ss_pred HHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhc
Q 043678 231 TVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAV 297 (303)
Q Consensus 231 ~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~ 297 (303)
++++|++.|+++ + .+..|.||||+|++.++.+++++|++ .|++++.+|..|+||||+|+..
T Consensus 205 ~v~~Ll~~ga~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~----~gad~~~~d~~g~t~l~~A~~~ 265 (285)
T 3d9h_A 205 CVKKLLESGADV-N-QGKGQDSPLHAVVRTASEELACLLMD----FGADTQAKNAEGKRPVELVPPE 265 (285)
T ss_dssp HHHHHHHTTCCT-T-CCBTTBCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCGGGGSCTT
T ss_pred HHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHhcCc
Confidence 999999999995 6 48999999999999999999988888 4888999999999999999843
No 8
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=3.6e-42 Score=285.42 Aligned_cols=259 Identities=16% Similarity=0.168 Sum_probs=215.6
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHH----HHHhCchhhhccccCCCcHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEE----ILEKCPALLLQVNAKGDTPL 77 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~----~~~~~~~~~~~~~~~g~tpL 77 (303)
.||||.|+..| .+++++|++.+++. .++..|.||||+| +..|+.+++++|+. .+...|.+++.+|..|.|||
T Consensus 95 ~t~L~~Aa~~~-~~~~~~L~~~~~n~-~d~~~g~t~Lh~A--a~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL 170 (373)
T 2fo1_E 95 PIKLHTEAAGS-YAITEPITRESVNI-IDPRHNRTVLHWI--ASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL 170 (373)
T ss_dssp CCHHHHHHHSS-SCCCSCCSTTTTTT-CCCSSCCCHHHHH--HCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHH
T ss_pred ccHHHHHhcCC-chHHHHhccccccc-cCCcCCCCHHHHH--HHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHH
Confidence 47999999955 58888888765542 3335699999999 99999999998873 22348999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCC---cceeeec
Q 043678 78 HLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNN---LILIFRD 154 (303)
Q Consensus 78 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~---~~~~~~~ 154 (303)
|+|+..|+.++|++|+++|+++ +..+..|.||||+|+..|+.+++++|++.+ .++...+
T Consensus 171 ~~A~~~g~~~iv~~Ll~~ga~~------------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d 232 (373)
T 2fo1_E 171 MLAVLARRRRLVAYLMKAGADP------------------TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELD 232 (373)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCS------------------CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCC
T ss_pred HHHHHcChHHHHHHHHHCCCCC------------------cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcC
Confidence 9999999999999999999875 478899999999999999999999999887 7889999
Q ss_pred ccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHH
Q 043678 155 SDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVER 234 (303)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~ 234 (303)
..|.++++.+..... ....+++++|++.+.+ ++..+.. .....+..|.||||+|+..|+.+++++
T Consensus 233 ~~g~t~L~~A~~~~~------~~~~~~v~~Ll~~g~~-~~~~~~~--------~~~~~d~~g~t~Lh~A~~~g~~~~v~~ 297 (373)
T 2fo1_E 233 RNGMTALMIVAHNEG------RDQVASAKLLVEKGAK-VDYDGAA--------RKDSEKYKGRTALHYAAQVSNMPIVKY 297 (373)
T ss_dssp TTSCCHHHHHHHSCS------TTHHHHHHHHHHHTCC-SSCCSGG--------GTSSSSCCCCCTHHHHHSSCCHHHHHH
T ss_pred CCCCCHHHHHHHhCC------cchHHHHHHHHHCCCC-ccccccc--------ccCcccccCCCHHHHHHHhCCHHHHHH
Confidence 999999988765431 1136889999998876 3321100 001112357788999999999999999
Q ss_pred HhhcC-CcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 235 IISEN-PKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 235 Ll~~g-~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
|++++ ++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|++.|+.++
T Consensus 298 Ll~~~~~~-~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~----~gad~~~~d~~g~t~l~~A~~~g~~~i 361 (373)
T 2fo1_E 298 LVGEKGSN-KDKQDEDGKTPIMLAAQEGRIEVVMYLIQ----QGASVEAVDATDHTARQLAQANNHHNI 361 (373)
T ss_dssp HHHHSCCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCSSCCCSSSCCHHHHHHHTTCHHH
T ss_pred HHHhcCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCccCCCCCCCCHHHHHHHcCCHHH
Confidence 99987 66 69999999999999999999999999888 588899999999999999999998764
No 9
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4.3e-42 Score=271.53 Aligned_cols=244 Identities=16% Similarity=0.127 Sum_probs=213.1
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||.|+..|+.+++++|+++|++....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+
T Consensus 4 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~ 77 (261)
T 2xai_A 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEA--CLGGHLSCVKILLK----HGAQVNGVTADWHTPLFNAC 77 (261)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHH
Confidence 4899999999999999999999988878888899999999 99999999999999 79999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
..|+.+++++|+++|++++ .+..|.||||+|+..|+.+++++|++.|++++..+..|.+++
T Consensus 78 ~~~~~~~v~~Ll~~g~~~~-------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 138 (261)
T 2xai_A 78 VSGSWDCVNLLLQHGASVQ-------------------PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPL 138 (261)
T ss_dssp HHTCHHHHHHHHHTTCCSS-------------------CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHH
T ss_pred HcCCHHHHHHHHHCCCCCC-------------------CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHH
Confidence 9999999999999998754 345699999999999999999999999999999999999999
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCc
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~ 241 (303)
+.+..... .++++.|++.+.+ ++. +. .|.||||+|+..|+.+++++|+++|++
T Consensus 139 ~~A~~~~~---------~~~v~~Ll~~g~~-~~~-~~----------------~g~t~Lh~A~~~~~~~~v~~Ll~~gad 191 (261)
T 2xai_A 139 YLACENQQ---------RACVKKLLESGAD-VNQ-GK----------------GQDSPLHAVARTASEELACLLMDFGAD 191 (261)
T ss_dssp HHHHHTTC---------HHHHHHHHHHTCC-TTC-CB----------------TTBCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHHhCC---------HHHHHHHHHcCCC-CCC-CC----------------CCCChHHHHHHcCCHHHHHHHHHcCCC
Confidence 98875443 5899999998776 332 22 566789999999999999999999999
Q ss_pred ccccccCCCChHHHHHHHhCCchhhHHHhhcccc----hhcccccCCCCCCcHHHHHHhcCCC
Q 043678 242 CYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSL----ARSLIDEGDAKGNTPLHVLAAVRPK 300 (303)
Q Consensus 242 ~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~----~~~~~~~~d~~g~tpL~~A~~~~~~ 300 (303)
++.+|..|+||+|+|+..+ ++++.|++.... ..++++.+|..|.||+|+|.+....
T Consensus 192 -~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p 251 (261)
T 2xai_A 192 -TQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLP 251 (261)
T ss_dssp -TTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSC
T ss_pred -CCCcCCCCCChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCCc
Confidence 5899999999999999654 577888776322 2356778899999999999876544
No 10
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.9e-42 Score=270.93 Aligned_cols=209 Identities=19% Similarity=0.168 Sum_probs=147.0
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHh--------hhhcccCCchhhhhhhhcccch-hhHHHHHHHHHhCchhhhccccCC
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIES--------LLTAKAKNTILHINIISSEREN-VSTKFVEEILEKCPALLLQVNAKG 73 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~--------~~~~~~g~t~Lh~A~~~~~~~~-~~~~~Ll~~~~~~~~~~~~~~~~g 73 (303)
+||+.||..|+.++|++|++.+.+. ...+..|.||||+| +..+.. +++++|++ .|++++.+|.+|
T Consensus 13 ~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a--~~~~~~~~~v~~Ll~----~Gadvn~~d~~G 86 (269)
T 4b93_B 13 EKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQC--PKCAPAQKRLAKVPA----SGLGVNVTSQDG 86 (269)
T ss_dssp HHHHHHHHTTCHHHHHHHHTCC----------------------------------------------CCCCTTCCCTTS
T ss_pred hHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHH--HHhCCHHHHHHHHHH----CCCCCCCcCCCC
Confidence 6899999999999999999985532 23455689999999 877765 46777877 899999999999
Q ss_pred CcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeee
Q 043678 74 DTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFR 153 (303)
Q Consensus 74 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~ 153 (303)
.||||+|+..|+.+++++|++.|+++. ..+..|.||+++|+..++.+++++|++.|++++..
T Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~~------------------~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~ 148 (269)
T 4b93_B 87 SSPLHVAALHGRADLIPLLLKHGANAG------------------ARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKK 148 (269)
T ss_dssp CCHHHHHHHTTCTTHHHHHHHTTCCTT------------------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC
T ss_pred CCHHHHHHHcCcHHHHHHHHhcCCCcC------------------ccCCCCCCccccccccChHHHHHHHHHCCCCCCCC
Confidence 999999999999999999999998754 78899999999999999999999988887764433
Q ss_pred cccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHH
Q 043678 154 DSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVE 233 (303)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~ 233 (303)
+. .|.||||+|+..|+.++++
T Consensus 149 d~-----------------------------------------------------------~g~TpL~~A~~~g~~~~v~ 169 (269)
T 4b93_B 149 DL-----------------------------------------------------------SGNTPLIYACSGGHHELVA 169 (269)
T ss_dssp CT-----------------------------------------------------------TCCCHHHHHHHTTCGGGHH
T ss_pred CC-----------------------------------------------------------CCCCHHHHHHHCCCHHHHH
Confidence 33 3345577777777777777
Q ss_pred HHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCC
Q 043678 234 RIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRP 299 (303)
Q Consensus 234 ~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~ 299 (303)
+|+++|++ ++.++..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|++++.
T Consensus 170 ~Ll~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~----~Gad~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 170 LLLQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLL----HGASVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp HHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHH----TTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred HHHHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHhCCc
Confidence 77777777 47777777777777777777777777766 467777777777777777776553
No 11
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.4e-41 Score=263.42 Aligned_cols=214 Identities=21% Similarity=0.233 Sum_probs=185.4
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhh-hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCc--hhhhc-cccCCCcHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESL-LTAKAKNTILHINIISSERENVSTKFVEEILEKCP--ALLLQ-VNAKGDTPL 77 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~--~~~~~-~~~~g~tpL 77 (303)
+||||.|+..|+.+++++|++.+.+.. ..+..|.||||+| +..|+.+++++|++ .+ .+++. .+..|.|||
T Consensus 3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~g~t~L 76 (228)
T 2dzn_A 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS--VSFQAHEITSFLLS----KMENVNLDDYPDDSGWTPF 76 (228)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TCTTCCGGGCCCTTSCCHH
T ss_pred ccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHH--HHcCCHHHHHHHHh----ccccccccccCCCCCCCHH
Confidence 589999999999999999999987654 3677799999999 99999999999999 66 55666 788999999
Q ss_pred HHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccc
Q 043678 78 HLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDE 157 (303)
Q Consensus 78 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~ 157 (303)
|+|+..|+.+++++|+++|...+ ++..+..|.||||+|+..++.+++++|++.|+++
T Consensus 77 ~~A~~~~~~~~~~~Ll~~g~~~~----------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------- 133 (228)
T 2dzn_A 77 HIACSVGNLEVVKSLYDRPLKPD----------------LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV------- 133 (228)
T ss_dssp HHHHHHCCHHHHHHHHSSSSCCC----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-------
T ss_pred HHHHHcCCHHHHHHHHhCCCCcc----------------cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-------
Confidence 99999999999999999983322 5578899999999999999999999988777653
Q ss_pred cchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhh
Q 043678 158 KTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIIS 237 (303)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~ 237 (303)
+..+. .|.||||+|+..|+.+++++|++
T Consensus 134 ------------------------------------~~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll~ 161 (228)
T 2dzn_A 134 ------------------------------------RIKDK----------------FNQIPLHRAASVGSLKLIELLCG 161 (228)
T ss_dssp ------------------------------------CCCCT----------------TSCCHHHHHHHTTCHHHHHHHHT
T ss_pred ------------------------------------cccCC----------------CCCCHHHHHHHcCCHHHHHHHHh
Confidence 22333 35577999999999999999999
Q ss_pred cC-CcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCC
Q 043678 238 EN-PKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPK 300 (303)
Q Consensus 238 ~g-~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~ 300 (303)
.| ++ ++.+|..|+||||+|+..++.+++++|++. .|++++.+|..|+||||+|++.+..
T Consensus 162 ~g~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---~ga~~~~~~~~g~t~l~~A~~~~~~ 221 (228)
T 2dzn_A 162 LGKSA-VNWQDKQGWTPLFHALAEGHGDAAVLLVEK---YGAEYDLVDNKGAKAEDVALNEQVK 221 (228)
T ss_dssp TTCCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHH---HCCCSCCBCTTSCBGGGGCSSTTHH
T ss_pred cCccc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCcHHHHHHHHHHH
Confidence 99 66 689999999999999999999999999832 6889999999999999999876543
No 12
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.8e-41 Score=263.34 Aligned_cols=211 Identities=23% Similarity=0.216 Sum_probs=168.7
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||.|+..|+.+++++|+++|++....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+
T Consensus 12 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~ 85 (237)
T 3b7b_A 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEA--AENNHLEAVKYLIK----AGALVDPKDAEGSTCLHLAA 85 (237)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH--HHTTCHHHHHHHHT----TTCCCCCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHH--HHhCCHHHHHHHHh----CCCCCCCCCCCCCcHHHHHH
Confidence 3678888888888888888887776666666678888888 77788888888877 67777777777888888888
Q ss_pred HhCCHHHHHHHHHHh-HHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 82 KFGHFDIVRVLIERA-KLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
..|+.+++++|++.| .+ ++..+..|.||||+|+..++.+++++|++.|++
T Consensus 86 ~~~~~~~~~~Ll~~~~~~------------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------- 136 (237)
T 3b7b_A 86 KKGHYEVVQYLLSNGQMD------------------VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD----------- 136 (237)
T ss_dssp HTTCHHHHHHHHTTTCCC------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----------
T ss_pred HcCCHHHHHHHHhCCCCC------------------cccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----------
Confidence 888888888888776 33 346677778888888888887777776666554
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCC
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENP 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~ 240 (303)
++..+. .|.||||+|+..|+.+++++|+++|+
T Consensus 137 --------------------------------~~~~~~----------------~g~t~L~~A~~~~~~~~~~~Ll~~g~ 168 (237)
T 3b7b_A 137 --------------------------------INIRDN----------------EENICLHWAAFSGCVDIAEILLAAKC 168 (237)
T ss_dssp --------------------------------TTCCCT----------------TSCCHHHHHHHHCCHHHHHHHHTTTC
T ss_pred --------------------------------CCccCC----------------CCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 233333 45577999999999999999999999
Q ss_pred cccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCC
Q 043678 241 KCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPK 300 (303)
Q Consensus 241 ~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~ 300 (303)
+ ++..|..|.||||+|++.++.+++++|++ .|++++.+|..|+||||+|+..++.
T Consensus 169 ~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~gad~~~~d~~g~t~l~~A~~~~~~ 223 (237)
T 3b7b_A 169 D-LHAVNIHGDSPLHIAARENRYDCVVLFLS----RDSDVTLKNKEGETPLQCASLNSQV 223 (237)
T ss_dssp C-TTCCCTTCCCHHHHHHHTTCHHHHHHHHT----TTCCTTCCCTTSCCHHHHSCTTCHH
T ss_pred C-CCCcCCCCCCHHHHHHHhCCHhHHHHHHH----cCCCCCccCCCCCCHHHHHHHHHHH
Confidence 9 58899999999999999999988888887 5788999999999999999988754
No 13
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.4e-41 Score=270.49 Aligned_cols=230 Identities=20% Similarity=0.145 Sum_probs=175.7
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHH---hhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIE---SLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLH 78 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~---~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~ 78 (303)
.||||.|+..|+.++|++|++.+.+ ....+..|.||||+| +..|+.+++++|++ .|++++.++..|.||||
T Consensus 10 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~----~ga~~~~~~~~g~tpL~ 83 (282)
T 1oy3_D 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA--AILGEASTVEKLYA----AGAGVLVAERGGHTALH 83 (282)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHH--HHHTCHHHHHHHHH----TTCCSSCCCTTSCCHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHH
Confidence 4899999999999999999999876 456677799999999 99999999999999 79999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHhHHhhcCchH-----------------------------HHHHHHHhhhhhccccCCCccHHH
Q 043678 79 LAAKFGHFDIVRVLIERAKLAQRGDEE-----------------------------LENRIEAFRQMIRMVNNEKNTALH 129 (303)
Q Consensus 79 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~t~l~ 129 (303)
+|+..|+.+++++|+++|+........ ...........++..+..|.||||
T Consensus 84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~ 163 (282)
T 1oy3_D 84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH 163 (282)
T ss_dssp HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred HHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHH
Confidence 999999999999999987653211110 000011122446778888889999
Q ss_pred HHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCccccccc
Q 043678 130 EAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSN 209 (303)
Q Consensus 130 ~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~ 209 (303)
+|+..|+.+++++|++.|+++ +..+..
T Consensus 164 ~A~~~g~~~~v~~Ll~~g~~~-------------------------------------------~~~~~~---------- 190 (282)
T 1oy3_D 164 VAVIHKDAEMVRLLRDAGADL-------------------------------------------NKPEPT---------- 190 (282)
T ss_dssp HHHHTTCHHHHHHHHHHTCCT-------------------------------------------TCCCTT----------
T ss_pred HHHHcCCHHHHHHHHHcCCCC-------------------------------------------CCCCCC----------
Confidence 999888888888877666542 222211
Q ss_pred ccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCc
Q 043678 210 IADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNT 289 (303)
Q Consensus 210 ~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~t 289 (303)
.|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++ .|++++.+|..|.|
T Consensus 191 -----~g~tpL~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t 260 (282)
T 1oy3_D 191 -----CGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRA----HGAPEPEDGGDKLS 260 (282)
T ss_dssp -----TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTSSCHHHHHHHHH----TTCCCCCCC-----
T ss_pred -----CCcCHHHHHHHcCCHHHHHHHHHcCCC-CcccccCCCCHHHHHHHcCCcHHHHHHHH----cCCCcCcCCCcccc
Confidence 356779999999999999999999999 58999999999999999999988888887 58889999999999
Q ss_pred HHHHHHhcCCC
Q 043678 290 PLHVLAAVRPK 300 (303)
Q Consensus 290 pL~~A~~~~~~ 300 (303)
||++|......
T Consensus 261 pl~~a~~~~~~ 271 (282)
T 1oy3_D 261 PCSSSGSDSDS 271 (282)
T ss_dssp -----------
T ss_pred cccccCCcccc
Confidence 99999876543
No 14
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.4e-41 Score=262.63 Aligned_cols=212 Identities=22% Similarity=0.227 Sum_probs=185.1
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHH-hhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIE-SLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A 80 (303)
++||+.|+..|+.+.++++++.+.. ....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 80 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWA--CSAGHTEIVEFLLQ----LGVPVNDKDDAGWSPLHIA 80 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH--HHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHH
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHH--HHcCcHHHHHHHHH----hCCCCCCcCCCCCCHHHHH
Confidence 5799999999999999999998543 335667799999999 99999999999998 7999999999999999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
+..|+.+++++|+++|+++ +.++..|.||||+|+..++.+++++|++.|+++
T Consensus 81 ~~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---------- 132 (231)
T 3aji_A 81 ASAGXDEIVKALLVKGAHV------------------NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP---------- 132 (231)
T ss_dssp HHHTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT----------
T ss_pred HHcCHHHHHHHHHHcCCCC------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------
Confidence 9999999999999998774 478899999999999999999999988776642
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCC
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENP 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~ 240 (303)
+..+. .|.||||+|+..|+.+++++|+++|+
T Consensus 133 ---------------------------------~~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll~~g~ 163 (231)
T 3aji_A 133 ---------------------------------DAKDH----------------YDATAMHRAAAKGNLKMVHILLFYKA 163 (231)
T ss_dssp ---------------------------------TCCCT----------------TSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred ---------------------------------CCcCC----------------CCCcHHHHHHHcCCHHHHHHHHhcCC
Confidence 22222 35577999999999999999999999
Q ss_pred cccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCC
Q 043678 241 KCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKE 301 (303)
Q Consensus 241 ~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~ 301 (303)
+ ++.+|..|+||||+|+..++.+++++|++ .|++++.+|..|+||||+|++.++.+
T Consensus 164 ~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~A~~~~~~~ 219 (231)
T 3aji_A 164 S-TNIQDTEGNTPLHLACDEERVEEAKFLVT----QGASIYIENKEEKTPLQVAKGGLGLI 219 (231)
T ss_dssp C-SCCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHSCHHHHHH
T ss_pred C-ccccCCCCCCHHHHHHHCCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHhhHHHH
Confidence 9 58899999999999999999988888887 47889999999999999998776543
No 15
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.6e-41 Score=265.36 Aligned_cols=217 Identities=19% Similarity=0.162 Sum_probs=162.1
Q ss_pred ChhHHHHHhcCCChhHHHHHHH----HHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARD----VIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPL 77 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~----~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL 77 (303)
.||||.||..|+.+++++|++. +.+....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.|||
T Consensus 10 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l 83 (241)
T 1k1a_A 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA--VITTLPSVVRLLVT----AGASPMALDRHGQTAA 83 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHH--HHcCCHHHHHHHHH----cCCCccccCCCCCCHH
Confidence 3677777777777777777762 444444555577777777 77777777777776 6677777777777777
Q ss_pred HHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccc
Q 043678 78 HLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDE 157 (303)
Q Consensus 78 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~ 157 (303)
|+|+..|+.+++++|++.++... ..++..+..|.||||+|+..++.+++++|++.|++
T Consensus 84 ~~A~~~~~~~~~~~Ll~~~~~~~--------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-------- 141 (241)
T 1k1a_A 84 HLACEHRSPTCLRALLDSAAPGT--------------LDLEARNYDGLTALHVAVNTECQETVQLLLERGAD-------- 141 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTS--------------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--------
T ss_pred HHHHHcCCHHHHHHHHHcCCCcc--------------ccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC--------
Confidence 77777777777777777665210 01345666777777777777777777766665543
Q ss_pred cchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhh-hcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHh
Q 043678 158 KTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETD-QYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERII 236 (303)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll 236 (303)
++..+ . .|.||||+|+..|+.+++++|+
T Consensus 142 -----------------------------------~~~~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll 170 (241)
T 1k1a_A 142 -----------------------------------IDAVDIK----------------SGRSPLIHAVENNSLSMVQLLL 170 (241)
T ss_dssp -----------------------------------TTCCCTT----------------TCCCHHHHHHHTTCHHHHHHHH
T ss_pred -----------------------------------ccccccc----------------CCCcHHHHHHHcCCHHHHHHHH
Confidence 22222 2 4567799999999999999999
Q ss_pred hcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 237 SENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 237 ~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.++
T Consensus 171 ~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~tpl~~A~~~~~~~i 231 (241)
T 1k1a_A 171 QHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVR----SGADSSLKNCHNDTPLMVARSRRVIDI 231 (241)
T ss_dssp HTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCTTTTCSSHHHHHH
T ss_pred HcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHh----cCCCCCCcCCCCCCHHHHHHhcCcHHH
Confidence 99999 58999999999999999999999998888 578899999999999999999887654
No 16
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-41 Score=274.73 Aligned_cols=234 Identities=23% Similarity=0.224 Sum_probs=194.8
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.|||+.||..|+.++|++|+++|++.+..+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+
T Consensus 41 ~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~----~ga~~~~~~~~g~tpL~~A~ 114 (299)
T 1s70_B 41 GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQA--CIDDNVDMVKFLVE----NGANINQPDNEGWIPLHAAA 114 (299)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH--HHcCCHHHHHHHHH----CCCCCCCCCCCCCcHHHHHH
Confidence 3789999999999999999999988777787899999999 99999999999999 79999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHh-hCCcceeeecccccch
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKK-TNNLILIFRDSDEKTN 160 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~-~~~~~~~~~~~~~~~~ 160 (303)
..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++++ ..+.++......+..
T Consensus 115 ~~g~~~~v~~Ll~~g~~~~------------------~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~- 175 (299)
T 1s70_B 115 SCGYLDIAEYLISQGAHVG------------------AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEER- 175 (299)
T ss_dssp HHTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHH-
T ss_pred HcCCHHHHHHHHhCCCCCC------------------CcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhh-
Confidence 9999999999999988754 78899999999999999999999855 444443322221111
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCC
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENP 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~ 240 (303)
.....+..++..+.......+. .|.||||+|+..|+.+++++|+++|+
T Consensus 176 ----------------~~~~~~~~~l~~~~~~~~~~~~----------------~g~t~L~~A~~~g~~~~v~~Ll~~g~ 223 (299)
T 1s70_B 176 ----------------IMLRDARQWLNSGHINDVRHAK----------------SGGTALHVAAAKGYTEVLKLLIQARY 223 (299)
T ss_dssp ----------------HHHHHHHHHHHHTCCCCCCCTT----------------TCCCHHHHHHHHTCHHHHHHHHTTTC
T ss_pred ----------------HHHHHHHHHHhccCcchhhhcC----------------CCCCHHHHHHHCCcHHHHHHHHHcCC
Confidence 1123344455444432222222 56678999999999999999999999
Q ss_pred cccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhc
Q 043678 241 KCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAV 297 (303)
Q Consensus 241 ~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~ 297 (303)
+ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|++.
T Consensus 224 d-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~----~gad~~~~d~~g~t~l~~A~~~ 275 (299)
T 1s70_B 224 D-VNIKDYDGWTPLHAAAHWGKEEACRILVE----NLCDMEAVNKVGQTAFDVADED 275 (299)
T ss_dssp C-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCTTTSCCSG
T ss_pred C-CCCcCCCCCcHHHHHHhcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHH
Confidence 9 58999999999999999999999999888 5788999999999999999764
No 17
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.7e-40 Score=275.05 Aligned_cols=264 Identities=17% Similarity=0.133 Sum_probs=211.7
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||.|+..|+.++|++|+++|++....+..|.||||+| +..|+.+++++|++ .|.+ ..+..|.||||+|+
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~--~~~~~g~t~L~~A~ 92 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA--CKFGCVDTAKYLAS----VGEV--HSLWHGQKPIHLAV 92 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH--HHHCCHHHHHHHHH----HCCC--CCCBTTBCHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHH--HHcCCHHHHHHHHH----CCCC--ccccCCCCHHHHHH
Confidence 3799999999999999999999988888888899999999 99999999999999 4653 33458999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHH---HhhhhhccccCCCccHHHHHHhcC--cHHHHHhHhhCCcceeeeccc
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIE---AFRQMIRMVNNEKNTALHEAVSHG--NVDLFKLKKTNNLILIFRDSD 156 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~t~l~~A~~~~--~~~~v~~L~~~~~~~~~~~~~ 156 (303)
..|+.+++++|++.+.........+..... .....++..+..|.||||+|+..| +.+++++|++.|++++..+..
T Consensus 93 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~ 172 (364)
T 3ljn_A 93 MANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKA 172 (364)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTT
T ss_pred HcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCC
Confidence 999999999999995442210000000000 000112337889999999999999 999999999999999999999
Q ss_pred ccchhhhhhccchhHHhhhhhHHHHHHHHHHhccch----hchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHH
Q 043678 157 EKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNL----IKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTV 232 (303)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v 232 (303)
|.++++++..... .+++++|++.+.+. ++..+.. |.||||+|+..|+.+++
T Consensus 173 g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~~~~~~----------------g~t~L~~A~~~g~~~~v 227 (364)
T 3ljn_A 173 DETPLMRAMEFRN---------REALDLMMDTVPSKSSLRLDYANKQ----------------GNSHLHWAILINWEDVA 227 (364)
T ss_dssp SCCHHHHHHHTTC---------HHHHHHHHHHCSCSSSCCTTCCCTT----------------CCCTTHHHHTTTCHHHH
T ss_pred CCCHHHHHHHcCC---------HHHHHHHHhcccccccccccccCCC----------------CCcHHHHHHHcCCHHHH
Confidence 9999998875543 68999999987662 4444444 45669999999999999
Q ss_pred HHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccch--------hcccccCCCCCCcHHHHHHhcCC
Q 043678 233 ERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLA--------RSLIDEGDAKGNTPLHVLAAVRP 299 (303)
Q Consensus 233 ~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~--------~~~~~~~d~~g~tpL~~A~~~~~ 299 (303)
++|+++|++ ++.+|..|+||||+|++.|+.+++++|++.+... +......+..|+||+++|+..++
T Consensus 228 ~~Ll~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~ 301 (364)
T 3ljn_A 228 MRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPS 301 (364)
T ss_dssp HHHHTTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHH
T ss_pred HHHHHcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccC
Confidence 999999999 5899999999999999999999999999975332 11222357889999998877654
No 18
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2.6e-39 Score=255.52 Aligned_cols=209 Identities=17% Similarity=0.144 Sum_probs=183.6
Q ss_pred cCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHH
Q 043678 33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEA 112 (303)
Q Consensus 33 ~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 112 (303)
+|+||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+..|+.+++++|+++|+++
T Consensus 2 ~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------------- 62 (261)
T 2xai_A 2 SDWSPMHEA--AIHGHQLSLRNLIS----QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV------------- 62 (261)
T ss_dssp --CCHHHHH--HHHTCHHHHHHHHH----TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-------------
T ss_pred CCCCHHHHH--HHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-------------
Confidence 489999999 99999999999999 79999999999999999999999999999999999874
Q ss_pred hhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccch
Q 043678 113 FRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNL 192 (303)
Q Consensus 113 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 192 (303)
+..|..|.||||+|+..|+.+++++|++.|+++.. ...+.++++.+..... .++++.|++.+.+
T Consensus 63 -----~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~- 126 (261)
T 2xai_A 63 -----NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGH---------VECVNSLIAYGGN- 126 (261)
T ss_dssp -----TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTC---------HHHHHHHHHTTCC-
T ss_pred -----CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCc---------HHHHHHHHHcCCC-
Confidence 48899999999999999999999999999988764 4457888887765433 5889999998776
Q ss_pred hchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 193 IKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 193 ~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
++..+.. |.||||+|+..|+.+++++|+++|+++ + .+..|+||||+|++.++.+++++|++
T Consensus 127 ~~~~~~~----------------g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~Lh~A~~~~~~~~v~~Ll~- 187 (261)
T 2xai_A 127 IDHKISH----------------LGTPLYLACENQQRACVKKLLESGADV-N-QGKGQDSPLHAVARTASEELACLLMD- 187 (261)
T ss_dssp TTCCBTT----------------TBCHHHHHHHTTCHHHHHHHHHHTCCT-T-CCBTTBCHHHHHHHHTCHHHHHHHHH-
T ss_pred CCcCCCC----------------CCCHHHHHHHhCCHHHHHHHHHcCCCC-C-CCCCCCChHHHHHHcCCHHHHHHHHH-
Confidence 5555554 456699999999999999999999995 6 48899999999999999999988888
Q ss_pred ccchhcccccCCCCCCcHHHHHHhcC
Q 043678 273 NSLARSLIDEGDAKGNTPLHVLAAVR 298 (303)
Q Consensus 273 ~~~~~~~~~~~d~~g~tpL~~A~~~~ 298 (303)
.|++++.+|..|+||||+|+..+
T Consensus 188 ---~gad~~~~d~~g~tpl~~A~~~~ 210 (261)
T 2xai_A 188 ---FGADTQAKNAEGKRPVELVPPES 210 (261)
T ss_dssp ---TTCCTTCCCTTSCCGGGGSCTTC
T ss_pred ---cCCCCCCcCCCCCChhhhccccc
Confidence 58889999999999999998654
No 19
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=6e-39 Score=256.85 Aligned_cols=243 Identities=18% Similarity=0.140 Sum_probs=207.0
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||.|+..|+.+++++|+++|++....+..|.||||+| +..|+.+++++|++ .|.+++..+..|.||||+|+
T Consensus 40 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~ 113 (285)
T 1wdy_A 40 WTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA--AIAGSVKLLKLFLS----KGADVNECDFYGFTAFMEAA 113 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH--HHHTCHHHHHHHHH----TTCCTTCBCTTCCBHHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCccCcccCCHHHHHH
Confidence 4799999999999999999999988877788899999999 99999999999999 79999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhC-Ccceeeecccccch
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTN-NLILIFRDSDEKTN 160 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~-~~~~~~~~~~~~~~ 160 (303)
..|+.+++++|+++|++++..... .......+..|.||||+|+..|+.+++++|++. +.+++..+..|.++
T Consensus 114 ~~~~~~~~~~Ll~~g~~~~~~~~~--------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~ 185 (285)
T 1wdy_A 114 VYGKVKALKFLYKRGANVNLRRKT--------KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 185 (285)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCCC--------CHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCH
T ss_pred HhCCHHHHHHHHHhCCCccccccc--------HHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCH
Confidence 999999999999999876532210 011223478899999999999999999999876 99999999999999
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhh-cC
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIIS-EN 239 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~-~g 239 (303)
++.+....... ...+++++|++.+.+ ++..+..| .||||+|+..|+.+++++|++ .|
T Consensus 186 l~~a~~~~~~~-----~~~~i~~~Ll~~g~~-~~~~~~~g----------------~t~L~~A~~~~~~~~v~~Ll~~~g 243 (285)
T 1wdy_A 186 LIHALLSSDDS-----DVEAITHLLLDHGAD-VNVRGERG----------------KTPLILAVEKKHLGLVQRLLEQEH 243 (285)
T ss_dssp HHHHHHCSCTT-----THHHHHHHHHHTTCC-SSCCCTTS----------------CCHHHHHHHTTCHHHHHHHHHSSS
T ss_pred HHHHHHccccc-----hHHHHHHHHHHcCCC-CCCcCCCC----------------CcHHHHHHHcCCHHHHHHHHhccC
Confidence 98887554321 125788888888766 55555544 566999999999999999999 78
Q ss_pred CcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCC
Q 043678 240 PKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDA 285 (303)
Q Consensus 240 ~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~ 285 (303)
++ ++.+|..|+||||+|++.++.+++++|++ .|++++.+|.
T Consensus 244 ~~-~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~----~Ga~~~~~d~ 284 (285)
T 1wdy_A 244 IE-INDTDSDGKTALLLAVELKLKKIAELLCK----RGASTDCGDL 284 (285)
T ss_dssp CC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH----HSSCSCCSSC
T ss_pred CC-ccccCCCCCcHHHHHHHcCcHHHHHHHHH----cCCCCCcccc
Confidence 88 58999999999999999999988888888 5788888774
No 20
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.4e-39 Score=266.80 Aligned_cols=246 Identities=18% Similarity=0.148 Sum_probs=215.0
Q ss_pred HHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHH
Q 043678 19 DMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKL 98 (303)
Q Consensus 19 ~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ 98 (303)
.+...+++....+..+.++||.| +..|+.+.++.|+. ..+.+++.++..|.||||+|+..|+.+++++|+++|++
T Consensus 9 ~l~~~~~~~~~~~~~~~~~L~~A--~~~g~~~~v~~ll~---~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 83 (351)
T 3utm_A 9 DLADPSAKAVLTGEYKKDELLEA--ARSGNEEKLMALLT---PLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83 (351)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHH--HHHTCHHHHHHHCC---TTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred hccCCceeeeeeccccchhHHHH--HHcCCHHHHHHHHH---hcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 44555666666777799999999 99999999998876 36888999999999999999999999999999999987
Q ss_pred hhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhH
Q 043678 99 AQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSI 178 (303)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (303)
+ +..|..|.||||+|+..|+.+++++|++.|++++..+..|.++++.+.....
T Consensus 84 ~------------------~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--------- 136 (351)
T 3utm_A 84 V------------------HAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNR--------- 136 (351)
T ss_dssp T------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC---------
T ss_pred C------------------CccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC---------
Confidence 5 4888999999999999999999999999999999999999999998875443
Q ss_pred HHHHHHHHHhccchhchhhhcCCCccccccc--------------------------------------ccccCCcccHH
Q 043678 179 YAALPKLLEKKKNLIKETDQYGWTPIQSTSN--------------------------------------IADKDRKMTAL 220 (303)
Q Consensus 179 ~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~--------------------------------------~~~~~~~~t~L 220 (303)
.+++++|++.+.+ ++..+..|.||++.+.. ......+.|||
T Consensus 137 ~~~v~~Ll~~g~~-~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L 215 (351)
T 3utm_A 137 VEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETAL 215 (351)
T ss_dssp HHHHHHHHHTTCC-TTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHH
T ss_pred HHHHHHHHHcCCC-CccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHH
Confidence 6899999999877 78888999999887642 12345789999
Q ss_pred hHHHhc---CCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhc
Q 043678 221 HLAAGK---GDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAV 297 (303)
Q Consensus 221 ~~a~~~---~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~ 297 (303)
|+|+.. +..+++++|++.|++ ++.+|..|+||||+|++.|+.+++++|++ .|++++.+|..|+||||+|++.
T Consensus 216 ~~A~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~n~~d~~g~t~L~~A~~~ 290 (351)
T 3utm_A 216 HCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHK----HGAKMNALDSLGQTALHRAALA 290 (351)
T ss_dssp HHHHHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHH
T ss_pred HHHHHHhCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHc
Confidence 999999 568999999999999 58999999999999999999999998887 5788999999999999999999
Q ss_pred CCCCC
Q 043678 298 RPKEF 302 (303)
Q Consensus 298 ~~~~i 302 (303)
|+.++
T Consensus 291 ~~~~~ 295 (351)
T 3utm_A 291 GHLQT 295 (351)
T ss_dssp TCHHH
T ss_pred CcHHH
Confidence 98654
No 21
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=8.2e-39 Score=264.90 Aligned_cols=224 Identities=15% Similarity=0.152 Sum_probs=191.7
Q ss_pred HHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCch
Q 043678 25 IESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDE 104 (303)
Q Consensus 25 ~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~ 104 (303)
++....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+..|+.+++++|+++|++.
T Consensus 11 ~~~~~~d~~g~t~L~~A--a~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~----- 79 (364)
T 3ljn_A 11 LNRIKSDDENMEKIHVA--ARKGQTDEVRRLIE----TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH----- 79 (364)
T ss_dssp -----CCHHHHHHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-----
T ss_pred CCccccCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-----
Confidence 33445566699999999 99999999999999 79999999999999999999999999999999999753
Q ss_pred HHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhC----Ccceee-----------------ecccccchhhh
Q 043678 105 ELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTN----NLILIF-----------------RDSDEKTNILF 163 (303)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~----~~~~~~-----------------~~~~~~~~~~~ 163 (303)
.+..|.||||+|+..|+.+++++|++. +.++.. .+..+.++++.
T Consensus 80 ---------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~ 144 (364)
T 3ljn_A 80 ---------------SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHW 144 (364)
T ss_dssp ---------------CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHH
T ss_pred ---------------cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHH
Confidence 346899999999999999999999977 666555 88889999988
Q ss_pred hhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcc-
Q 043678 164 KFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKC- 242 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~- 242 (303)
+..... ...+++++|++.+.+ ++..+..| .||||+|+..|+.+++++|+++|++.
T Consensus 145 A~~~g~-------~~~~~v~~Ll~~ga~-~~~~d~~g----------------~t~L~~A~~~g~~~~v~~Ll~~g~~~~ 200 (364)
T 3ljn_A 145 CVGLGP-------EYLEMIKILVQLGAS-PTAKDKAD----------------ETPLMRAMEFRNREALDLMMDTVPSKS 200 (364)
T ss_dssp HHHSCG-------GGHHHHHHHHHHTCC-TTCCCTTS----------------CCHHHHHHHTTCHHHHHHHHHHCSCSS
T ss_pred HHHcCC-------chHHHHHHHHHcCCC-CcccCCCC----------------CCHHHHHHHcCCHHHHHHHHhcccccc
Confidence 875541 136899999999776 56666555 46699999999999999999999882
Q ss_pred ---cccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 243 ---YELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 243 ---~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
++..|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|++.|+.++
T Consensus 201 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~gad~~~~d~~g~tpL~~A~~~g~~~~ 259 (364)
T 3ljn_A 201 SLRLDYANKQGNSHLHWAILINWEDVAMRFVE----MGIDVNMEDNEHTVPLYLSVRAAMVLL 259 (364)
T ss_dssp SCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT----TTCCTTCCCTTSCCHHHHHHHTCCHHH
T ss_pred cccccccCCCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHhChHHH
Confidence 48899999999999999999999999888 588899999999999999999998654
No 22
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=6.8e-39 Score=247.50 Aligned_cols=204 Identities=17% Similarity=0.110 Sum_probs=154.4
Q ss_pred cCCChhHHHHHHHHHHhhh-hcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHH
Q 043678 11 AGNSEPFKDMARDVIESLL-TAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIV 89 (303)
Q Consensus 11 ~g~~~~v~~ll~~~~~~~~-~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v 89 (303)
.|+.+++++|+++|.+... .+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+..|+.+++
T Consensus 1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v 74 (223)
T 2f8y_A 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLA--ARYSRSDAAKRLLE----ASADANIQDNMGRTPLHAAVSADAQGVF 74 (223)
T ss_dssp ----CCEETTEETTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred CCcHHHHHHHHHcCCCcccccCCCCCchHHHH--HHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence 3788999999999887653 366799999999 99999999999998 7999999999999999999999999999
Q ss_pred HHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccch
Q 043678 90 RVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLD 169 (303)
Q Consensus 90 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (303)
++|++.++.. ++..+..|.||||+|+..++.+++++|++.+++++..+..
T Consensus 75 ~~Ll~~~~~~-----------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~------------- 124 (223)
T 2f8y_A 75 QILIRNRATD-----------------LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL------------- 124 (223)
T ss_dssp HHHHHBTTSC-----------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTT-------------
T ss_pred HHHHHcCCCC-----------------cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCC-------------
Confidence 9999987621 4577889999999999999999999988887764443333
Q ss_pred hHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCC
Q 043678 170 LFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNR 249 (303)
Q Consensus 170 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~ 249 (303)
|.||||+|+..|+.+++++|+++|++ ++.+|..
T Consensus 125 ----------------------------------------------g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~ 157 (223)
T 2f8y_A 125 ----------------------------------------------GKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNR 157 (223)
T ss_dssp ----------------------------------------------SCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred ----------------------------------------------CCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCC
Confidence 34556666666666666666666666 3566666
Q ss_pred CChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCC
Q 043678 250 GWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKE 301 (303)
Q Consensus 250 g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~ 301 (303)
|.||||+|++.++.+++++|++ .|++++.+|..|.|||++|++.++.+
T Consensus 158 g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~A~~~~~~~ 205 (223)
T 2f8y_A 158 EETPLFLAAREGSYETAKVLLD----HFANRDITDHMDRLPRDIAQERMHHD 205 (223)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred CcCHHHHHHHcCCHHHHHHHHH----cCCCCccccccCCCHHHHHHHhcchH
Confidence 6666666666666666666665 35556666666666666666666544
No 23
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=5.4e-38 Score=257.30 Aligned_cols=252 Identities=15% Similarity=0.123 Sum_probs=206.8
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||.|+..|+.++|++|+++|++....+..+.++++.+ +..+..+.+..++. .+.+++.++..|.||||+|+
T Consensus 60 ~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~d~~g~t~l~~A~ 133 (337)
T 4g8k_A 60 WTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA--AIAGSVKLLKLFLS----KGADVNECDFYGFTAFMEAA 133 (337)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH--HHHTCHHHHHHHHT----TTCCTTCBCTTCCBHHHHHH
T ss_pred cCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHH--HhcccchhhHHhhh----ccchhhhhccCCCCHHHHHH
Confidence 3899999999999999999999998888888899999999 99999999988887 78999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHh-hCCcceeeecccccch
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKK-TNNLILIFRDSDEKTN 160 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~-~~~~~~~~~~~~~~~~ 160 (303)
..|+.+++++|+++|++++.... ........+..|.||||+|+..|+.++|++|+ ..|++++..+..|.++
T Consensus 134 ~~~~~~~~~~ll~~ga~~~~~~~--------~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~ 205 (337)
T 4g8k_A 134 VYGKVKALKFLYKRGANVNLRRK--------TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 205 (337)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCC--------CC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCH
T ss_pred HcCcHHHHHHHHHcCCCcchhhc--------cccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcH
Confidence 99999999999999988753222 11123456778999999999999999999988 5799999999999998
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccc------------------cccCCcccHHhH
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNI------------------ADKDRKMTALHL 222 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~------------------~~~~~~~t~L~~ 222 (303)
++....... ......+++.|++.+.+ ++..+..|.||||.++.. ..+..|.||||+
T Consensus 206 l~~~~~~~~-----~~~~~~i~~lLl~~gad-~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~ 279 (337)
T 4g8k_A 206 LIHALLSSD-----DSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL 279 (337)
T ss_dssp HHHHHHHSC-----TTTHHHHHHHHHHTTCC-TTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHH
T ss_pred HHHHHHHcC-----cccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHH
Confidence 876542211 11124567778887776 888999999999976511 223579999999
Q ss_pred HHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccC
Q 043678 223 AAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEG 283 (303)
Q Consensus 223 a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~ 283 (303)
|++.|+.++|++||++|+++ + +.+|||+|++.|+.+++++|++ +||+++..
T Consensus 280 A~~~g~~~iv~~Ll~~GAd~-n-----~~~~L~~A~~~~~~~iv~~Ll~----~GA~~d~~ 330 (337)
T 4g8k_A 280 AVELKLKKIAELLCKRGAST-D-----CGDLVMTARRNYDHSLVKVLLS----HGAKEDFH 330 (337)
T ss_dssp HHHTTCHHHHHHHHTTSCSS-T-----TCCHHHHHHHTTCHHHHHHHHH----TTCCC---
T ss_pred HHHcCCHHHHHHHHHCCCCC-C-----CCCHHHHHHHcCCHHHHHHHHH----CcCCCCCC
Confidence 99999999999999999984 4 3569999999999999998888 46767653
No 24
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.2e-38 Score=253.24 Aligned_cols=216 Identities=16% Similarity=0.144 Sum_probs=193.6
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||.|+..|+.+++++|++.|++....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+
T Consensus 60 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~----~ga~~~~~~~~g~t~L~~A~ 133 (285)
T 3d9h_A 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEA--CLGGHLSCVKILLK----HGAQVNGVTADWHTPLFNAC 133 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCSSCCCTTCCCHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH--HHCCcHHHHHHHHH----CCCCCCCCCCCCCCHHHHHH
Confidence 4899999999999999999999988777888899999999 99999999999999 79999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
..|+.+++++|++.|++++ .+..|.||||+|+..|+.+++++|++.|++++..+..|.+++
T Consensus 134 ~~~~~~~v~~Ll~~g~~~~-------------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L 194 (285)
T 3d9h_A 134 VSGSWDCVNLLLQHGASVQ-------------------PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPL 194 (285)
T ss_dssp HHTCHHHHHHHHHTTCCSS-------------------CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHH
T ss_pred HcCHHHHHHHHHHCCCCCC-------------------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence 9999999999999988753 244599999999999999999999999999999999999999
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCc
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~ 241 (303)
+.+..... .+++++|++.+.+ ++. +. .|.||||+|+..|+.+++++|+++|++
T Consensus 195 ~~A~~~~~---------~~~v~~Ll~~ga~-~~~-~~----------------~g~t~L~~A~~~~~~~~v~~Ll~~gad 247 (285)
T 3d9h_A 195 YLACENQQ---------RACVKKLLESGAD-VNQ-GK----------------GQDSPLHAVVRTASEELACLLMDFGAD 247 (285)
T ss_dssp HHHHHTTC---------HHHHHHHHHTTCC-TTC-CB----------------TTBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHcCc---------HHHHHHHHHCCCC-CCC-CC----------------CCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 88875543 5899999998776 332 32 566779999999999999999999999
Q ss_pred ccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 242 CYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 242 ~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
++.+|..|+||||+|+ ++.++++.|++.
T Consensus 248 -~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~ 275 (285)
T 3d9h_A 248 -TQAKNAEGKRPVELVP--PESPLAQLFLER 275 (285)
T ss_dssp -TTCCCTTSCCGGGGSC--TTSHHHHHHHHH
T ss_pred -CCCcCCCCCCHHHHhc--CccHHHHHHHHh
Confidence 5899999999999999 456888888886
No 25
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=5.5e-38 Score=260.28 Aligned_cols=225 Identities=18% Similarity=0.147 Sum_probs=197.5
Q ss_pred ChhHHHHHhcCCChhHHHHH--------HHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCC
Q 043678 2 DLNFFKAASAGNSEPFKDMA--------RDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKG 73 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll--------~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g 73 (303)
.||||.|+..|+.+++++|+ +.|++.+..+..|.||||+| +..|+.+++++|++ .|++++.++..|
T Consensus 126 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A--~~~g~~~iv~~Ll~----~ga~~~~~~~~g 199 (373)
T 2fo1_E 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLA--VLARRRRLVAYLMK----AGADPTIYNKSE 199 (373)
T ss_dssp CCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHH----TTCCSCCCCTTC
T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHH--HHcChHHHHHHHHH----CCCCCcccCCCC
Confidence 48999999999999999887 45776677777899999999 99999999999999 799999999999
Q ss_pred CcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcC---cHHHHHhHhhCCcce
Q 043678 74 DTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHG---NVDLFKLKKTNNLIL 150 (303)
Q Consensus 74 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~---~~~~v~~L~~~~~~~ 150 (303)
.||||+|+..|+.+++++|++++.. ...++..|..|.||||+|+..+ +.+++++|++.|+++
T Consensus 200 ~t~L~~A~~~g~~~~v~~Ll~~~~~---------------~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~ 264 (373)
T 2fo1_E 200 RSALHQAAANRDFGMMVYMLNSTKL---------------KGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV 264 (373)
T ss_dssp CCHHHHHHHTTCHHHHHHHTTSHHH---------------HHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCS
T ss_pred CCHHHHHHHCCCHHHHHHHHhcCcc---------------ccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCc
Confidence 9999999999999999999998731 1125688999999999999998 899999999999887
Q ss_pred ee--------ecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhH
Q 043678 151 IF--------RDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHL 222 (303)
Q Consensus 151 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~ 222 (303)
.. .+..|.++++.+..... .+++++|++.++..++..+..|. ||||+
T Consensus 265 ~~~~~~~~~~~d~~g~t~Lh~A~~~g~---------~~~v~~Ll~~~~~~~n~~d~~g~----------------TpL~~ 319 (373)
T 2fo1_E 265 DYDGAARKDSEKYKGRTALHYAAQVSN---------MPIVKYLVGEKGSNKDKQDEDGK----------------TPIML 319 (373)
T ss_dssp SCCSGGGTSSSSCCCCCTHHHHHSSCC---------HHHHHHHHHHSCCCTTCCCTTCC----------------CHHHH
T ss_pred ccccccccCcccccCCCHHHHHHHhCC---------HHHHHHHHHhcCCCccCcCCCCC----------------CHHHH
Confidence 75 55678889988876544 58999999988665777776665 55999
Q ss_pred HHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcc
Q 043678 223 AAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENN 273 (303)
Q Consensus 223 a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~ 273 (303)
|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++..
T Consensus 320 A~~~g~~~iv~~Ll~~gad-~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~ 369 (373)
T 2fo1_E 320 AAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFDRCR 369 (373)
T ss_dssp HHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHcCCC-ccCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 9999999999999999999 5899999999999999999999999998864
No 26
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=2e-37 Score=241.84 Aligned_cols=225 Identities=19% Similarity=0.216 Sum_probs=180.6
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccc-cCCCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVN-AKGDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~-~~g~tpL~~A 80 (303)
.+||+.|+..|+.+++++|++.|.+....+..|.||||+| +..|+.+++++|++ .+.+++... ..|.||||+|
T Consensus 10 ~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~t~L~~A 83 (240)
T 3eu9_A 10 TWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWA--AINNRIDLVKYYIS----KGAIVDQLGGDLNSTPLHWA 83 (240)
T ss_dssp GCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCBTTTTBCHHHHH
T ss_pred chHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHH--HHhCCHHHHHHHHH----cCCcchhhcCCcCCChhHHH
Confidence 4789999999999999999999988777777899999999 99999999999998 677666544 4599999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|++.++++...+..|.++
T Consensus 84 ~~~~~~~~v~~Ll~~g~~~~------------------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~ 145 (240)
T 3eu9_A 84 TRQGHLSMVVQLMKYGADPS------------------LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTP 145 (240)
T ss_dssp HHHTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred HHcCCHHHHHHHHHcCCCCc------------------ccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcH
Confidence 99999999999999987754 788899999999999999999999999999888888888887
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCC
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENP 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~ 240 (303)
++.+..... ..++++.|+..+.+ ++..+. ..|.||||+|+..|+.+++++|+++|+
T Consensus 146 l~~a~~~~~--------~~~~~~~L~~~~~~-~~~~~~---------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 201 (240)
T 3eu9_A 146 LMWAAYRTH--------SVDPTRLLLTFNVS-VNLGDK---------------YHKNTALHWAVLAGNTTVISLLLEAGA 201 (240)
T ss_dssp HHHHHHHCC--------SSTTHHHHHHTTCC-TTCCCT---------------TTCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred HHHHHHhCC--------hHHHHHHHHhcCCC-cchhhc---------------cCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 776652221 13555666666555 333322 134466888888888888888888888
Q ss_pred cccccccCCCChHHHHHHHhCCchhhHHHhhcccc
Q 043678 241 KCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSL 275 (303)
Q Consensus 241 ~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~ 275 (303)
+ ++.+|..|.||||+|++.++.+++++|++....
T Consensus 202 ~-~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 202 N-VDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp C-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred C-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 7 477888888888888888888888888776543
No 27
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=2.9e-37 Score=239.77 Aligned_cols=205 Identities=19% Similarity=0.107 Sum_probs=172.2
Q ss_pred cCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHH
Q 043678 33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEA 112 (303)
Q Consensus 33 ~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 112 (303)
.|.||||+| +..|+.+++++|++. .|.+++.++..|.||||+|+..|+.+++++|++.|++....
T Consensus 2 ~g~t~L~~A--~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~---------- 66 (232)
T 2rfa_A 2 IWESPLLLA--AKENDVQALSKLLKF---EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE---------- 66 (232)
T ss_dssp CTTCHHHHH--HHTTCHHHHHHHHTT---TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC----------
T ss_pred CCCCHHHHH--HHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccc----------
Confidence 489999999 999999999999982 49999999999999999999999999999999999875311
Q ss_pred hhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccch
Q 043678 113 FRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNL 192 (303)
Q Consensus 113 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 192 (303)
..+..|..|.||||+|+..|+.+++++|++.|+++...+....... .
T Consensus 67 ---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~------------------------------~ 113 (232)
T 2rfa_A 67 ---PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHY------------------------------R 113 (232)
T ss_dssp ---CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSC------------------------------C
T ss_pred ---cccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceee------------------------------c
Confidence 1246778999999999999999999999999888666544321100 0
Q ss_pred hchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 193 IKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 193 ~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
.+..+ ..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++..+++.
T Consensus 114 ~~~~~----------------~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~ 176 (232)
T 2rfa_A 114 PHNLI----------------YYGEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVLHILILQPNKTFACQMYNL 176 (232)
T ss_dssp TTCSC----------------CCCSSHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTCSCHHHHHHHHHH
T ss_pred ccccc----------------cCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCChHHHHHHHHH
Confidence 11112 2567889999999999999999999999 589999999999999999999999777777
Q ss_pred ccchhccc------ccCCCCCCcHHHHHHhcCCCCC
Q 043678 273 NSLARSLI------DEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 273 ~~~~~~~~------~~~d~~g~tpL~~A~~~~~~~i 302 (303)
+...|+++ +.+|..|+||||+|++.|+.++
T Consensus 177 Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~ 212 (232)
T 2rfa_A 177 LLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVM 212 (232)
T ss_dssp HHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHH
Confidence 77778877 5899999999999999998764
No 28
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.5e-37 Score=248.49 Aligned_cols=229 Identities=20% Similarity=0.076 Sum_probs=166.9
Q ss_pred hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchh---hhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchH
Q 043678 29 LTAKAKNTILHINIISSERENVSTKFVEEILEKCPAL---LLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEE 105 (303)
Q Consensus 29 ~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~---~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~ 105 (303)
..+..|.||||+| +..|+.+++++|++ .+.+ ++.++..|.||||+|+..|+.+++++|+++|+++
T Consensus 4 ~~d~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~------ 71 (282)
T 1oy3_D 4 YVTEDGDTALHLA--VIHQHEPFLDFLLG----FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV------ 71 (282)
T ss_dssp CCCTTCCCHHHHH--HHTTCHHHHHHHHH----HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS------
T ss_pred ccCCCCCcHHHHH--HHcCCHHHHHHHHh----cCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------
Confidence 3566699999999 99999999999998 3554 8889999999999999999999999999999875
Q ss_pred HHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhcc-chhHHhhhhhH---HHH
Q 043678 106 LENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRH-LDLFRIQTNSI---YAA 181 (303)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~ 181 (303)
+.++..|.||||+|+..|+.+++++|++.+.................... ........... ...
T Consensus 72 ------------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (282)
T 1oy3_D 72 ------------LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENE 139 (282)
T ss_dssp ------------SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------------------------
T ss_pred ------------CCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchh
Confidence 48889999999999999999999999988776332222111100000000 00000000000 000
Q ss_pred HHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccC-CCChHHHHHHHh
Q 043678 182 LPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDN-RGWNFLHYAMVS 260 (303)
Q Consensus 182 ~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~-~g~tpl~~A~~~ 260 (303)
....+......++. ....|.||||+|+..|+.+++++|+++|+++ +..+. .|+||||+|++.
T Consensus 140 ~~~~~~~~~~~~~~----------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~ 202 (282)
T 1oy3_D 140 EEPRDEDWRLQLEA----------------ENYDGHTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEA 202 (282)
T ss_dssp ----CCCGGGGTTC----------------CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHT
T ss_pred hhhhhhhhhhcCCC----------------cCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHc
Confidence 00000000111122 2236778899999999999999999999995 77775 599999999999
Q ss_pred CCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 261 FHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 261 ~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
|+.+++++|++ .|++++.+|..|+||||+|++.++.++
T Consensus 203 ~~~~~v~~Ll~----~gad~~~~d~~g~tpL~~A~~~~~~~~ 240 (282)
T 1oy3_D 203 QAASVLELLLK----AGADPTARMYGGRTPLGSALLRPNPIL 240 (282)
T ss_dssp TCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHTSSCHHH
T ss_pred CCHHHHHHHHH----cCCCCcccccCCCCHHHHHHHcCCcHH
Confidence 99999998888 488899999999999999999998654
No 29
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.7e-37 Score=248.05 Aligned_cols=191 Identities=13% Similarity=0.077 Sum_probs=100.7
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAK 82 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~ 82 (303)
||||.|+..|+.+++++|+++|++.... +|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+.
T Consensus 33 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A--~~~g~~~~v~~Ll~----~ga~~~~~d~~g~t~L~~A~~ 104 (285)
T 3kea_A 33 SASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQA--ATLEDTKIVKILLF----SGLDDSQFDDKGNTALYYAVD 104 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHH--TTSSSCHHHHHHHH----TTCCTTCCCTTSCCHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHH--HHcCCHHHHHHHHH----CCCCCCCcCCCCCcHHHHHHH
Confidence 4555555555555555555554443222 245555555 55555555555554 445555555555555555555
Q ss_pred hCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCC-ccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 83 FGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEK-NTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 83 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
.|+.+++++|+++|++++ ..+..| .||||+|+..|+.+++++|++.|.+....
T Consensus 105 ~g~~~~v~~Ll~~ga~~~------------------~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-------- 158 (285)
T 3kea_A 105 SGNMQTVKLFVKKNWRLM------------------FYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-------- 158 (285)
T ss_dssp TTCHHHHHHHHHHCGGGG------------------GCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC--------
T ss_pred cCCHHHHHHHHhcCCCCC------------------ccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc--------
Confidence 555555555555544432 444444 45555555555555555544444332000
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCc
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~ 241 (303)
..|.||||+|+..|+.+++++|+++|++
T Consensus 159 ----------------------------------------------------~~g~t~L~~A~~~g~~~~v~~Ll~~gad 186 (285)
T 3kea_A 159 ----------------------------------------------------AILLSCIHITIKNGHVDMMILLLDYMTS 186 (285)
T ss_dssp ----------------------------------------------------STHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------cCCccHHHHHHHcChHHHHHHHHHcCCC
Confidence 0345566666666666666666666666
Q ss_pred ccccccCCCChH-HHHHHHhCCchhhHHHhhcccchhcccccCC
Q 043678 242 CYELVDNRGWNF-LHYAMVSFHVGQLRNLLENNSLARSLIDEGD 284 (303)
Q Consensus 242 ~~~~~~~~g~tp-l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d 284 (303)
++.+|..|+|| ||+|+..++.+++++|++ .|++++.+|
T Consensus 187 -~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~----~gad~~~~~ 225 (285)
T 3kea_A 187 -TNTNNSLLFIPDIKLAIDNKDIEMLQALFK----YDINIYSAN 225 (285)
T ss_dssp -TCTTCCCBCCTTHHHHHHHTCHHHHHHHTT----SCBCSTTTT
T ss_pred -CCcccCCCCChHHHHHHHcCCHHHHHHHHH----cCCCCCCCC
Confidence 36666666665 666666666666665555 355555555
No 30
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=2.9e-38 Score=245.98 Aligned_cols=216 Identities=17% Similarity=0.136 Sum_probs=176.4
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHH----hhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIE----SLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPL 77 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~----~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL 77 (303)
.||||.|+..|+.+++++|++.+.. ....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.|||
T Consensus 9 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L 82 (236)
T 1ikn_D 9 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA--VITNQPEIAEALLG----AGCDPELRDFRGNTPL 82 (236)
T ss_dssp CCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHH--HHTTCHHHHHCCCS----CCCCSCCCCTTCCCHH
T ss_pred CchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCCcCCCCCCHH
Confidence 4899999999999999999998663 446677799999999 99999999999998 7999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccc
Q 043678 78 HLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDE 157 (303)
Q Consensus 78 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~ 157 (303)
|+|+..|+.+++++|++.|++... ...++..+..|.||||+|+..|+.+++++|++.|+++
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------- 143 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHL------------HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV------- 143 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSS------------SCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-------
T ss_pred HHHHHcCCHHHHHHHHhcccchhH------------HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------
Confidence 999999999999999999875431 1224578889999999999999999998877776642
Q ss_pred cchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhh
Q 043678 158 KTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIIS 237 (303)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~ 237 (303)
+..+. ..|.||||+|+..|+.+++++|++
T Consensus 144 ------------------------------------~~~~~---------------~~g~tpL~~A~~~~~~~~v~~Ll~ 172 (236)
T 1ikn_D 144 ------------------------------------NAQEP---------------CNGRTALHLAVDLQNPDLVSLLLK 172 (236)
T ss_dssp ------------------------------------TCCCT---------------TTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred ------------------------------------CCCCC---------------CCCCCHHHHHHHcCCHHHHHHHHH
Confidence 22222 034577999999999999999999
Q ss_pred cCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccc--cCCCCCCcHHHHHHhcC
Q 043678 238 ENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLID--EGDAKGNTPLHVLAAVR 298 (303)
Q Consensus 238 ~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~--~~d~~g~tpL~~A~~~~ 298 (303)
+|++ ++.+|..|+||||+|+..++.+++++|++. |++.. ..+..|.||.+.+....
T Consensus 173 ~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~----ga~~~~~~~~~~~~~~~~~~~~~~ 230 (236)
T 1ikn_D 173 CGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQL----TLENLQMLPESEDEESYDTESEFT 230 (236)
T ss_dssp TTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTT----SCGGGSSCCCCCTTTCCCCC----
T ss_pred cCCC-CCcccCCCCCHHHHHHccCchHHHHHHHHc----chhhhhcCCccchHHHHhhhcccc
Confidence 9999 589999999999999999999999998886 44444 77889999988766544
No 31
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=2e-36 Score=235.08 Aligned_cols=202 Identities=17% Similarity=0.152 Sum_probs=168.4
Q ss_pred ChhHHHHHhcCCChhHHHHHHH-HHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhh-----hccccCCCc
Q 043678 2 DLNFFKAASAGNSEPFKDMARD-VIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALL-----LQVNAKGDT 75 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~-----~~~~~~g~t 75 (303)
+||||.|+..|+.+++++|++. +.+....+..|.||||+| +..|+.+++++|++ .+.++ +..+..|.|
T Consensus 4 ~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~~g~t 77 (232)
T 2rfa_A 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIA--ALYDNLEAAMVLME----AAPELVFEPMTSELYEGQT 77 (232)
T ss_dssp TCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----HCGGGGGCCCCSTTTTTCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHH--HHcCCHHHHHHHHH----cCchhccccccccCCCCcC
Confidence 5899999999999999999998 887777888899999999 99999999999999 46655 567789999
Q ss_pred HHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecc
Q 043678 76 PLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDS 155 (303)
Q Consensus 76 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~ 155 (303)
|||+|+..|+.+++++|+++|++++..+... .+....+..+..|.||||+|+..|+.+++++|++.|++
T Consensus 78 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~-----~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------ 146 (232)
T 2rfa_A 78 ALHIAVINQNVNLVRALLARGASVSARATGS-----VFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD------ 146 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCCSG-----GGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC------
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCcccCCc-----ceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC------
Confidence 9999999999999999999998876322110 01111233456899999999999999999998887775
Q ss_pred cccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHH---
Q 043678 156 DEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTV--- 232 (303)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v--- 232 (303)
++..|. .|.||||+|+..|+.+++
T Consensus 147 -------------------------------------~~~~d~----------------~g~t~L~~A~~~~~~~~~~~i 173 (232)
T 2rfa_A 147 -------------------------------------IRAQDS----------------LGNTVLHILILQPNKTFACQM 173 (232)
T ss_dssp -------------------------------------TTCCCT----------------TSCCHHHHHHTCSCHHHHHHH
T ss_pred -------------------------------------CCCCCC----------------CCCCHHHHHHHcCChHHHHHH
Confidence 333344 345669999999999988
Q ss_pred -HHHhhcCCccc-----ccccCCCChHHHHHHHhCCchhhHHHhhcc
Q 043678 233 -ERIISENPKCY-----ELVDNRGWNFLHYAMVSFHVGQLRNLLENN 273 (303)
Q Consensus 233 -~~Ll~~g~~~~-----~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~ 273 (303)
++|+++|++.. +.+|..|+||||+|++.|+.+++++|++.+
T Consensus 174 ~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 174 YNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp HHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 99999999842 588999999999999999999999999864
No 32
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=5.3e-36 Score=231.25 Aligned_cols=189 Identities=23% Similarity=0.178 Sum_probs=169.4
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCch-hhhccccCCCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPA-LLLQVNAKGDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~-~~~~~~~~g~tpL~~A 80 (303)
.||||.|+..|+.+++++|+++|++....+..|.||||+| +..|+.+++++|++ .+. +++..+..|.||||+|
T Consensus 26 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~~~~~~~~~~~~g~t~L~~A 99 (223)
T 2f8y_A 26 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA--VSADAQGVFQILIR----NRATDLDARMHDGTTPLILA 99 (223)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----BTTSCTTCCCTTCCCHHHHH
T ss_pred CchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCcccCCCCCCcHHHHH
Confidence 4899999999999999999999988877888899999999 99999999999998 444 8889999999999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.|+++
T Consensus 100 ~~~~~~~~~~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---------- 151 (223)
T 2f8y_A 100 ARLAVEGMLEDLINSHADV------------------NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK---------- 151 (223)
T ss_dssp HHHTCHHHHHHHHHTTCCT------------------TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT----------
T ss_pred HHhCcHHHHHHHHHcCCCC------------------cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC----------
Confidence 9999999999999998874 478899999999999999999999988777652
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCC
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENP 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~ 240 (303)
+..+. .|.||||+|+..|+.+++++|+++|+
T Consensus 152 ---------------------------------~~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll~~ga 182 (223)
T 2f8y_A 152 ---------------------------------DMQNN----------------REETPLFLAAREGSYETAKVLLDHFA 182 (223)
T ss_dssp ---------------------------------TCCCT----------------TCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred ---------------------------------CCcCC----------------CCcCHHHHHHHcCCHHHHHHHHHcCC
Confidence 33333 44577999999999999999999999
Q ss_pred cccccccCCCChHHHHHHHhCCchhhHHHhhccc
Q 043678 241 KCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNS 274 (303)
Q Consensus 241 ~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~ 274 (303)
+ ++.+|..|.||+|+|++.++.+++++|++.+.
T Consensus 183 ~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~ 215 (223)
T 2f8y_A 183 N-RDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215 (223)
T ss_dssp C-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred C-CccccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence 9 58999999999999999999999999998654
No 33
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=4e-36 Score=236.30 Aligned_cols=187 Identities=22% Similarity=0.170 Sum_probs=168.5
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCch-hhhccccCCCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPA-LLLQVNAKGDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~-~~~~~~~~g~tpL~~A 80 (303)
.||||.|+..|+.+++++|+++|++....+..|.||||+| +..|+.+++++|++ .+. +++..+..|.||||+|
T Consensus 58 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~~~~~~~~~~~~g~t~L~~A 131 (253)
T 1yyh_A 58 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA--VSADAQGVFQILIR----NRATDLDARMHDGTTPLILA 131 (253)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHH----STTSCTTCCCTTCCCHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCccccCCCCCcHHHHH
Confidence 4899999999999999999999988888888899999999 99999999999998 555 8899999999999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.|+++
T Consensus 132 ~~~~~~~~v~~Ll~~g~~~------------------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~---------- 183 (253)
T 1yyh_A 132 ARLAVEGMLEDLINSHADV------------------NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK---------- 183 (253)
T ss_dssp HHHTCSSHHHHHHHTTCCT------------------TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT----------
T ss_pred HHcChHHHHHHHHHcCCCC------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------
Confidence 9999999999999998874 488899999999999999999999988877752
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCC
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENP 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~ 240 (303)
+..+. .|.||||+|+..|+.+++++|+++|+
T Consensus 184 ---------------------------------~~~~~----------------~g~tpL~~A~~~~~~~~v~~Ll~~ga 214 (253)
T 1yyh_A 184 ---------------------------------DMQNN----------------REETPLFLAAREGSYETAKVLLDHFA 214 (253)
T ss_dssp ---------------------------------TCCCT----------------TSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred ---------------------------------CCcCC----------------CCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 33333 45577999999999999999999999
Q ss_pred cccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 241 KCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 241 ~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
+ ++.+|..|+||+|+|++.|+.+++++|...
T Consensus 215 ~-~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~ 245 (253)
T 1yyh_A 215 N-RDITDHMDRLPRDIAQERMHHDIVRLLDLE 245 (253)
T ss_dssp C-TTCCCTTCCCHHHHHHHTTCHHHHHHHHC-
T ss_pred C-ccccccCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 9 589999999999999999999999998875
No 34
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.4e-36 Score=242.66 Aligned_cols=202 Identities=19% Similarity=0.162 Sum_probs=169.3
Q ss_pred HhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHH
Q 043678 9 ASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDI 88 (303)
Q Consensus 9 ~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~ 88 (303)
+...+.+.++.++..+ +....+..|.||||+| +..|+.+++++|++ .|.+++.. +|.||||+|+..|+.++
T Consensus 7 i~~~~~~~v~~lL~~~-~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~--~g~t~L~~A~~~g~~~~ 77 (285)
T 3kea_A 7 INTWKSKQLKSFLSSK-DTFKADVHGHSASYYA--IADNNVRLVCTLLN----AGALKNLL--ENEFPLHQAATLEDTKI 77 (285)
T ss_dssp GGGCCHHHHHHHHHST-TTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTGGGSCC--TTCCHHHHHTTSSSCHH
T ss_pred HHhcCHHHHHHHHHhC-CCCccCCCCCCHHHHH--HHcCCHHHHHHHHh----CCCCCCCC--CCCCHHHHHHHcCCHHH
Confidence 4555655555555543 3446777799999999 99999999999999 78888887 48999999999999999
Q ss_pred HHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccc
Q 043678 89 VRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHL 168 (303)
Q Consensus 89 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (303)
+++|+++|++++ .+|..|.||||+|+..|+.+++++|++.|+++
T Consensus 78 v~~Ll~~ga~~~------------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~------------------ 121 (285)
T 3kea_A 78 VKILLFSGLDDS------------------QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL------------------ 121 (285)
T ss_dssp HHHHHHTTCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG------------------
T ss_pred HHHHHHCCCCCC------------------CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC------------------
Confidence 999999998754 78899999999999999999999987777653
Q ss_pred hhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCc-ccHHhHHHhcCCHHHHHHHhhcCCccccccc
Q 043678 169 DLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRK-MTALHLAAGKGDARTVERIISENPKCYELVD 247 (303)
Q Consensus 169 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~-~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~ 247 (303)
+..+. .| .||||+|+..|+.+++++|+++|++..+ .
T Consensus 122 -------------------------~~~~~----------------~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~ 158 (285)
T 3kea_A 122 -------------------------MFYGK----------------TGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--L 158 (285)
T ss_dssp -------------------------GGCSS----------------SGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--C
T ss_pred -------------------------CccCC----------------CCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--c
Confidence 22222 33 5779999999999999999999988522 2
Q ss_pred CCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcH-HHHHHhcCCCCC
Q 043678 248 NRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTP-LHVLAAVRPKEF 302 (303)
Q Consensus 248 ~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tp-L~~A~~~~~~~i 302 (303)
..|.||||+|+..|+.+++++|++ .|++++.+|..|+|| ||+|++.++.++
T Consensus 159 ~~g~t~L~~A~~~g~~~~v~~Ll~----~gad~n~~~~~g~t~~L~~A~~~~~~~~ 210 (285)
T 3kea_A 159 AILLSCIHITIKNGHVDMMILLLD----YMTSTNTNNSLLFIPDIKLAIDNKDIEM 210 (285)
T ss_dssp STHHHHHHHHHHTTCHHHHHHHHH----HHHHTCTTCCCBCCTTHHHHHHHTCHHH
T ss_pred cCCccHHHHHHHcChHHHHHHHHH----cCCCCCcccCCCCChHHHHHHHcCCHHH
Confidence 389999999999999999998888 588899999999998 999999998654
No 35
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=8.4e-36 Score=232.86 Aligned_cols=194 Identities=19% Similarity=0.182 Sum_probs=166.9
Q ss_pred hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHH
Q 043678 29 LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELEN 108 (303)
Q Consensus 29 ~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~ 108 (303)
..|..|.||||+| +..|+.+++++|++.+...+.+++.++..|.||||+|+..|+.+++++|++.|++++
T Consensus 4 ~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------- 73 (241)
T 1k1a_A 4 RADEDGDTPLHIA--VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-------- 73 (241)
T ss_dssp ---CTTCCHHHHH--HHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--------
T ss_pred ccCCCCCcHHHHH--HHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc--------
Confidence 4566799999999 999999999999998888899999999999999999999999999999999998754
Q ss_pred HHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHh
Q 043678 109 RIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEK 188 (303)
Q Consensus 109 ~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 188 (303)
..+..|.||||+|+..++.+++++|++.+...
T Consensus 74 ----------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-------------------------------------- 105 (241)
T 1k1a_A 74 ----------ALDRHGQTAAHLACEHRSPTCLRALLDSAAPG-------------------------------------- 105 (241)
T ss_dssp ----------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTT--------------------------------------
T ss_pred ----------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc--------------------------------------
Confidence 78899999999999999999999977665420
Q ss_pred ccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCccccccc-CCCChHHHHHHHhCCchhhH
Q 043678 189 KKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVD-NRGWNFLHYAMVSFHVGQLR 267 (303)
Q Consensus 189 ~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~-~~g~tpl~~A~~~~~~~~~~ 267 (303)
...++..+. .|.||||+|+..|+.+++++|++.|+++ +..+ ..|.||||+|++.|+.++++
T Consensus 106 -~~~~~~~~~----------------~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~ 167 (241)
T 1k1a_A 106 -TLDLEARNY----------------DGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQ 167 (241)
T ss_dssp -SCCTTCCCT----------------TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred -cccccccCc----------------CCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHHHHH
Confidence 001222233 4567799999999999999999999995 7777 88999999999999999999
Q ss_pred HHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 268 NLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 268 ~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
+|++ .|++++.+|..|+||||+|+..++.++
T Consensus 168 ~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~ 198 (241)
T 1k1a_A 168 LLLQ----HGANVNAQMYSGSSALHSASGRGLLPL 198 (241)
T ss_dssp HHHH----TTCCTTCBCTTSCBHHHHHHHHTCHHH
T ss_pred HHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence 9888 478899999999999999999988654
No 36
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=7.4e-36 Score=232.93 Aligned_cols=218 Identities=18% Similarity=0.160 Sum_probs=190.0
Q ss_pred cccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHH
Q 043678 31 AKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRI 110 (303)
Q Consensus 31 ~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~ 110 (303)
+..|.|+||+| +..|+.+++++|++ .|.+++.++..|.||||+|+..|+.+++++|++.|++..
T Consensus 6 d~~~~~~l~~A--~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~---------- 69 (240)
T 3eu9_A 6 DDYSTWDIVKA--TQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD---------- 69 (240)
T ss_dssp SCGGGCCHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------
T ss_pred ccccchHHHHH--HHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcch----------
Confidence 44589999999 99999999999999 789999999999999999999999999999999987653
Q ss_pred HHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhcc
Q 043678 111 EAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKK 190 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 190 (303)
...+..|.||||+|+..|+.+++++|++.|+++...+..+.++++.+..... .+++++|++.+.
T Consensus 70 -------~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~Ll~~~~ 133 (240)
T 3eu9_A 70 -------QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH---------TSIVAYLIAKGQ 133 (240)
T ss_dssp -------CCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC---------HHHHHHHHHTTC
T ss_pred -------hhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCH---------HHHHHHHHhcCC
Confidence 2344569999999999999999999999999999999999999988875443 588999998876
Q ss_pred chhchhhhcCCCcccccccccccCCcccHHhHHHhcCC-HHHHHHHhhcCCcccccccC-CCChHHHHHHHhCCchhhHH
Q 043678 191 NLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGD-ARTVERIISENPKCYELVDN-RGWNFLHYAMVSFHVGQLRN 268 (303)
Q Consensus 191 ~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~-~~~v~~Ll~~g~~~~~~~~~-~g~tpl~~A~~~~~~~~~~~ 268 (303)
+ ++..+.. |.||||+|+..++ .+++++|++.|+++ +..+. .|.||||+|+..++.+++++
T Consensus 134 ~-~~~~~~~----------------g~t~l~~a~~~~~~~~~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~ 195 (240)
T 3eu9_A 134 D-VDMMDQN----------------GMTPLMWAAYRTHSVDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISL 195 (240)
T ss_dssp C-TTCCCTT----------------SCCHHHHHHHHCCSSTTHHHHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHH
T ss_pred C-ccccCCC----------------CCcHHHHHHHhCChHHHHHHHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHH
Confidence 6 5555544 4566999996665 88999999999994 77776 89999999999999999988
Q ss_pred HhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 269 LLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 269 ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
|++ .|++++.+|..|+|||++|++.++.++
T Consensus 196 Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~ 225 (240)
T 3eu9_A 196 LLE----AGANVDAQNIKGESALDLAKQRKNVWM 225 (240)
T ss_dssp HHH----HTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred HHH----cCCCCCCcCCCCCCHHHHHHHcCcHHH
Confidence 888 578899999999999999999998764
No 37
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=5.9e-36 Score=235.80 Aligned_cols=210 Identities=18% Similarity=0.082 Sum_probs=169.2
Q ss_pred cCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhc----cccCCCcHHHHHHHh---CCHHHHHHHHHHhHHhhcCchH
Q 043678 33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQ----VNAKGDTPLHLAAKF---GHFDIVRVLIERAKLAQRGDEE 105 (303)
Q Consensus 33 ~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~----~~~~g~tpL~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~ 105 (303)
.|.||||+| +..|+.+.++.|++++...|.+++. .+..|.||||+|+.. |+.+++++|++.|+++...+..
T Consensus 1 ~G~t~L~~A--~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 78 (256)
T 2etb_A 1 FDRDRLFSV--VSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL 78 (256)
T ss_dssp CCHHHHHHH--HHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred CCccHHHHH--HHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence 388999999 9999999887777766668999998 899999999999999 9999999999999986522210
Q ss_pred HHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHH
Q 043678 106 LENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKL 185 (303)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (303)
........|..|.||||+|+..|+.+++++|++.|++++..+..+..+.
T Consensus 79 -------~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~------------------------ 127 (256)
T 2etb_A 79 -------VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQK------------------------ 127 (256)
T ss_dssp -------GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSC------------------------
T ss_pred -------cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccc------------------------
Confidence 0001123457899999999999999999999999988766665443100
Q ss_pred HHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhh---cCCcccccccCCCChHHHHHHH--h
Q 043678 186 LEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIIS---ENPKCYELVDNRGWNFLHYAMV--S 260 (303)
Q Consensus 186 l~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~---~g~~~~~~~~~~g~tpl~~A~~--~ 260 (303)
+ ....+ ..|.||||+|+..|+.+++++|++ +|++ ++.+|..|+||||+|+. .
T Consensus 128 -----~-~~~~~----------------~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~~~~ 184 (256)
T 2etb_A 128 -----H-QGTCF----------------YFGELPLSLAACTKQWDVVTYLLENPHQPAS-LEATDSLGNTVLHALVMIAD 184 (256)
T ss_dssp -----C-SSSCC----------------CSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCC
T ss_pred -----c-ccccc----------------cCCCCHHHHHHHcCCHHHHHHHHhccccCCC-cCccCCCCCCHHHHHHHccc
Confidence 0 00011 137788999999999999999999 8999 58999999999999999 7
Q ss_pred CCch-------hhHHHhhcccchhccc-------ccCCCCCCcHHHHHHhcCCCCC
Q 043678 261 FHVG-------QLRNLLENNSLARSLI-------DEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 261 ~~~~-------~~~~ll~~~~~~~~~~-------~~~d~~g~tpL~~A~~~~~~~i 302 (303)
++.+ ++++|++ .|+++ +.+|..|+||||+|++.|+.++
T Consensus 185 ~~~~~~~~~~~iv~~Ll~----~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~ 236 (256)
T 2etb_A 185 NSPENSALVIHMYDGLLQ----MGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEI 236 (256)
T ss_dssp SCHHHHHHHHHHHHHHHH----HHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred CCchhhHHHHHHHHHHHH----cCCCcccccccccccCCCCCCHHHHHHHhCCHHH
Confidence 7766 6666666 68888 8999999999999999998764
No 38
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=4.9e-37 Score=239.06 Aligned_cols=195 Identities=21% Similarity=0.203 Sum_probs=162.7
Q ss_pred hcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHH
Q 043678 30 TAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENR 109 (303)
Q Consensus 30 ~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~ 109 (303)
.+..|.||||+| +..|+.+++++|++.....+.+++.++..|.||||+|+..|+.+++++|+++|+++
T Consensus 4 ~d~~g~t~L~~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---------- 71 (236)
T 1ikn_D 4 LTEDGDSFLHLA--IIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP---------- 71 (236)
T ss_dssp ---CCCCTTHHH--HHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS----------
T ss_pred CCCCCCchhHHH--HHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------
Confidence 455699999999 99999999999998654455678999999999999999999999999999998874
Q ss_pred HHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhc
Q 043678 110 IEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKK 189 (303)
Q Consensus 110 ~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 189 (303)
+.++..|.||||+|+..|+.+++++|++.+.+....
T Consensus 72 --------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~------------------------------------ 107 (236)
T 1ikn_D 72 --------ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH------------------------------------ 107 (236)
T ss_dssp --------CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSS------------------------------------
T ss_pred --------CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHH------------------------------------
Confidence 478899999999999999999999988876642110
Q ss_pred cchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccC-CCChHHHHHHHhCCchhhHH
Q 043678 190 KNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDN-RGWNFLHYAMVSFHVGQLRN 268 (303)
Q Consensus 190 ~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~-~g~tpl~~A~~~~~~~~~~~ 268 (303)
..++..+. .|.||||+|+..|+.+++++|+++|++ ++.++. .|+||||+|+..|+.+++++
T Consensus 108 -~~~~~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~ 169 (236)
T 1ikn_D 108 -SILKATNY----------------NGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSL 169 (236)
T ss_dssp -CGGGCCCT----------------TCCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred -HHhhccCC----------------CCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 00122222 466779999999999999999999999 478887 99999999999999999888
Q ss_pred HhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 269 LLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 269 ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
|++ .|++++.+|..|+||||+|+..++.++
T Consensus 170 Ll~----~ga~~~~~~~~g~tpl~~A~~~~~~~~ 199 (236)
T 1ikn_D 170 LLK----CGADVNRVTYQGYSPYQLTWGRPSTRI 199 (236)
T ss_dssp HHT----TTCCSCCCCTTCCCGGGGCTTSSCHHH
T ss_pred HHH----cCCCCCcccCCCCCHHHHHHccCchHH
Confidence 888 588899999999999999999988654
No 39
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=1.1e-35 Score=236.46 Aligned_cols=218 Identities=18% Similarity=0.140 Sum_probs=158.4
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhh--------hhcccCCchhhhhhhhcc---cchhhHHHHHHHHHhCchh-----
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESL--------LTAKAKNTILHINIISSE---RENVSTKFVEEILEKCPAL----- 65 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~--------~~~~~g~t~Lh~A~~~~~---~~~~~~~~Ll~~~~~~~~~----- 65 (303)
.||||.|+..|+.++|+.|++.+.+.. ..+..|.||||+| +.. |+.+++++|++. |.+
T Consensus 14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A--~~~~~~g~~~~v~~Ll~~----ga~~~~~~ 87 (273)
T 2pnn_A 14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA--MLNLHNGQNDTIALLLDV----ARKTDSLK 87 (273)
T ss_dssp HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHH--HHSCBTTBCHHHHHHHHH----HHHTTCHH
T ss_pred chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHH--HHHHhcCChHHHHHHHHh----hccccchh
Confidence 489999999999999999999865332 2356799999999 765 999999999994 433
Q ss_pred --hhc----cccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHH
Q 043678 66 --LLQ----VNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDL 139 (303)
Q Consensus 66 --~~~----~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~ 139 (303)
++. .+..|.||||+|+..|+.+++++|+++|++++..+..-. ......+..+..|.||||+|+..|+.++
T Consensus 88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~----~~~~~~~~~~~~g~tpL~~A~~~g~~~~ 163 (273)
T 2pnn_A 88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF----FKKTKGRPGFYFGELPLSLAACTNQLAI 163 (273)
T ss_dssp HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGG----GSSCSSSCCCCSCBSHHHHHHHTTCHHH
T ss_pred HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccc----cccccccccccCCCCHHHHHHHcCCHHH
Confidence 232 567899999999999999999999999988652211000 0000011122379999999999999999
Q ss_pred HHhHhh---CCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCc
Q 043678 140 FKLKKT---NNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRK 216 (303)
Q Consensus 140 v~~L~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~ 216 (303)
+++|++ .|++ ++..+.. |
T Consensus 164 v~~Ll~~~~~gad-------------------------------------------~~~~d~~----------------g 184 (273)
T 2pnn_A 164 VKFLLQNSWQPAD-------------------------------------------ISARDSV----------------G 184 (273)
T ss_dssp HHHHHHCSSCCCC-------------------------------------------TTCCCTT----------------S
T ss_pred HHHHHhcccCCCC-------------------------------------------ceeeCCC----------------C
Confidence 999887 6665 3333443 4
Q ss_pred ccHHhHHHhcCC---------HHHHHHHhhcCCccc------ccccCCCChHHHHHHHhCCchhhHHHhhcccchhc-cc
Q 043678 217 MTALHLAAGKGD---------ARTVERIISENPKCY------ELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARS-LI 280 (303)
Q Consensus 217 ~t~L~~a~~~~~---------~~~v~~Ll~~g~~~~------~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~-~~ 280 (303)
.||||+|+..|+ .+++++|+++|+++. +.+|..|+||||+|++.|+.+++++|++. |+ |+
T Consensus 185 ~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~----ga~dp 260 (273)
T 2pnn_A 185 NTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR----EIHEP 260 (273)
T ss_dssp CCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH----HTC--
T ss_pred CcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHC----CCCCc
Confidence 566999999888 799999999999852 35899999999999999999999999885 66 67
Q ss_pred ccCCCCCCcHHH
Q 043678 281 DEGDAKGNTPLH 292 (303)
Q Consensus 281 ~~~d~~g~tpL~ 292 (303)
......+++|-+
T Consensus 261 ~~~~~~~~~~~~ 272 (273)
T 2pnn_A 261 ECRHAAAHHHHH 272 (273)
T ss_dssp ------------
T ss_pred hhhhhhhhhccC
Confidence 877777777654
No 40
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=7.4e-36 Score=231.70 Aligned_cols=187 Identities=21% Similarity=0.170 Sum_probs=168.7
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||.|+..|+.+++++|++.|.+....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+
T Consensus 41 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~ 114 (231)
T 3aji_A 41 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA--ASAGXDEIVKALLV----KGAHVNAVNQNGCTPLHYAA 114 (231)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHH--HHcCHHHHHHHHHH----cCCCCCCCCCCCCCHHHHHH
Confidence 4899999999999999999999988777787899999999 99999999999999 79999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++.|+++
T Consensus 115 ~~~~~~~~~~Ll~~g~~~~------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------- 165 (231)
T 3aji_A 115 SKNRHEIAVMLLEGGANPD------------------AKDHYDATAMHRAAAKGNLKMVHILLFYKAST----------- 165 (231)
T ss_dssp HTTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-----------
T ss_pred HcCCHHHHHHHHHcCCCCC------------------CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-----------
Confidence 9999999999999988754 78899999999999999999999988777653
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCc
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~ 241 (303)
+..+. .|.||||+|+..|+.+++++|+++|++
T Consensus 166 --------------------------------~~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 197 (231)
T 3aji_A 166 --------------------------------NIQDT----------------EGNTPLHLACDEERVEEAKFLVTQGAS 197 (231)
T ss_dssp --------------------------------CCCCT----------------TSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred --------------------------------cccCC----------------CCCCHHHHHHHCCCHHHHHHHHHCCCC
Confidence 23333 355779999999999999999999999
Q ss_pred ccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 242 CYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 242 ~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
++.+|..|.||||+|++.++.+++++|.+.
T Consensus 198 -~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~ 227 (231)
T 3aji_A 198 -IYIENKEEKTPLQVAKGGLGLILKRLAEGE 227 (231)
T ss_dssp -SCCCCTTSCCHHHHSCHHHHHHHHHHHHHH
T ss_pred -CCCCCCCCCCHHHHHHhhHHHHHHHHHccc
Confidence 589999999999999999998888888774
No 41
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1e-35 Score=218.19 Aligned_cols=158 Identities=23% Similarity=0.314 Sum_probs=140.7
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.++|+.||..|+.++|+.|+++|++++..+..|.||||+| +..++.+++++|++ .|.+++.++..|.||||+|+
T Consensus 5 g~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a--~~~~~~~~~~~ll~----~gad~~~~d~~g~TpLh~A~ 78 (169)
T 4gpm_A 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHA--AENGHKEVVKLLIS----KGADVNAKDSDGRTPLHHAA 78 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHh----cccchhhhccCCCCHHHHHH
Confidence 4689999999999999999999999888888899999999 99999999999998 89999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|++.|++
T Consensus 79 ~~g~~~~v~~Ll~~gadv------------------n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad------------ 128 (169)
T 4gpm_A 79 ENGHKEVVKLLISKGADV------------------NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD------------ 128 (169)
T ss_dssp HTTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------
T ss_pred HcCCHHHHHHHHHCcCCC------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------
Confidence 999999999999999875 48899999999999999999999998888775
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCc
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~ 241 (303)
++..|. .|.||||+|++.|+.+++++|+++|++
T Consensus 129 -------------------------------~~~~d~----------------~G~TpL~~A~~~g~~~iv~~Ll~~GA~ 161 (169)
T 4gpm_A 129 -------------------------------VNTSDS----------------DGRTPLDLAREHGNEEVVKLLEKQGGW 161 (169)
T ss_dssp -------------------------------TTCCCT----------------TSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred -------------------------------ccccCC----------------CCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 333343 345669999999999999999999998
Q ss_pred c
Q 043678 242 C 242 (303)
Q Consensus 242 ~ 242 (303)
+
T Consensus 162 i 162 (169)
T 4gpm_A 162 L 162 (169)
T ss_dssp -
T ss_pred c
Confidence 4
No 42
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.2e-35 Score=229.92 Aligned_cols=186 Identities=22% Similarity=0.262 Sum_probs=164.8
Q ss_pred hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHH
Q 043678 29 LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELEN 108 (303)
Q Consensus 29 ~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~ 108 (303)
.++..|.||||+| +..|+.+++++|++ .|.+++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 6 ~~~~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--------- 70 (237)
T 3b7b_A 6 MEHQNKRSPLHAA--AEAGHVDICHMLVQ----AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV--------- 70 (237)
T ss_dssp CSSCCSCCHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC---------
T ss_pred cccCCCCCHHHHH--HHcCcHHHHHHHHH----cCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC---------
Confidence 5666799999999 99999999999999 79999999999999999999999999999999998774
Q ss_pred HHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCC-cceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHH
Q 043678 109 RIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNN-LILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLE 187 (303)
Q Consensus 109 ~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 187 (303)
+..+..|.||||+|+..|+.+++++|++.+ .+
T Consensus 71 ---------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~-------------------------------------- 103 (237)
T 3b7b_A 71 ---------DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD-------------------------------------- 103 (237)
T ss_dssp ---------CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC--------------------------------------
T ss_pred ---------CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC--------------------------------------
Confidence 478889999999999999999999977665 22
Q ss_pred hccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhH
Q 043678 188 KKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLR 267 (303)
Q Consensus 188 ~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~ 267 (303)
++..+. .|.||||+|+..|+.+++++|+++|++ ++.++..|.||||+|+..|+.++++
T Consensus 104 -----~~~~~~----------------~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~ 161 (237)
T 3b7b_A 104 -----VNCQDD----------------GGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIAE 161 (237)
T ss_dssp -----TTCCCT----------------TSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred -----cccCCC----------------CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHHHH
Confidence 223333 455779999999999999999999999 5889999999999999999998888
Q ss_pred HHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 268 NLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 268 ~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
+|++ .|++++.+|..|.||||+|++.++.++
T Consensus 162 ~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~ 192 (237)
T 3b7b_A 162 ILLA----AKCDLHAVNIHGDSPLHIAARENRYDC 192 (237)
T ss_dssp HHHT----TTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred HHHH----cCCCCCCcCCCCCCHHHHHHHhCCHhH
Confidence 8887 578899999999999999999987653
No 43
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=2.9e-35 Score=223.45 Aligned_cols=186 Identities=20% Similarity=0.201 Sum_probs=126.6
Q ss_pred hhHHHHHhcCCChhHHHHHHHHH-HhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVI-ESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
+||+.|+..|+.+.++.|+.++. +....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+
T Consensus 7 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~ 80 (201)
T 3hra_A 7 GALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA--VHNNDIEIAKALID----RGADINLQNSISDSPYLYAG 80 (201)
T ss_dssp THHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred cHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHH
Confidence 57777777777777777777644 4445555677777777 77777777777777 67777777777777777777
Q ss_pred HhCCHHHHHHHHHHhH-HhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCC-cceeeecccccc
Q 043678 82 KFGHFDIVRVLIERAK-LAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNN-LILIFRDSDEKT 159 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~-~~~~~~~~~~~~ 159 (303)
..|+.+++++|++.+. + ++..+..|.||||+|+..|+.+++++|++.+ .+
T Consensus 81 ~~~~~~~~~~Ll~~~~~~------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---------- 132 (201)
T 3hra_A 81 AQGRTEILAYMLKHATPD------------------LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED---------- 132 (201)
T ss_dssp HTTCHHHHHHHHHHSCCC------------------TTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCC----------
T ss_pred HcCCHHHHHHHHhccCcc------------------cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC----------
Confidence 7777777777775432 2 3466667777777777777777666655444 22
Q ss_pred hhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCC-----HHHHHH
Q 043678 160 NILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGD-----ARTVER 234 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~-----~~~v~~ 234 (303)
++..+.. |.||||+|+..++ .+++++
T Consensus 133 ---------------------------------~~~~~~~----------------g~t~L~~A~~~~~~~~~~~~~v~~ 163 (201)
T 3hra_A 133 ---------------------------------IDFQNDF----------------GYTALIEAVGLREGNQLYQDIVKL 163 (201)
T ss_dssp ---------------------------------TTCCCTT----------------SCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred ---------------------------------cCCCCCC----------------CCCHHHHHHHhccchhhHHHHHHH
Confidence 2333333 3455777777766 777777
Q ss_pred HhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 235 IISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 235 Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
|+++|++ ++.+|..|+||||+|++.|+.+++++|++.
T Consensus 164 Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 164 LMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp HHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred HHHCCCC-CCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 7777777 467777777777777777777777777664
No 44
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=1.6e-35 Score=233.32 Aligned_cols=203 Identities=14% Similarity=0.090 Sum_probs=158.9
Q ss_pred ChhHHHHHhcCCChhH----HHHHHHHHHhhh----hcccCCchhhhhhhhcc---cchhhHHHHHHHHHhCchhhhc--
Q 043678 2 DLNFFKAASAGNSEPF----KDMARDVIESLL----TAKAKNTILHINIISSE---RENVSTKFVEEILEKCPALLLQ-- 68 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v----~~ll~~~~~~~~----~~~~g~t~Lh~A~~~~~---~~~~~~~~Ll~~~~~~~~~~~~-- 68 (303)
.||||.|+..|+.+.| ++|++.|.+... .+..|.||||+| +.. |+.+++++|++ .|.+++.
T Consensus 3 ~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A--~~~~~~g~~~~v~~Ll~----~g~~~~~~~ 76 (256)
T 2etb_A 3 RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA--VLNLQDGVNACIMPLLQ----IDKDSGNPK 76 (256)
T ss_dssp HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH--HHTCBTTBCTTHHHHHH----HHHHTTCSS
T ss_pred ccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH--HHccccchHHHHHHHHh----cCCcccchh
Confidence 3899999999999855 555567776655 677799999999 888 99999999998 4665553
Q ss_pred ---------cccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHH
Q 043678 69 ---------VNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDL 139 (303)
Q Consensus 69 ---------~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~ 139 (303)
.|..|.||||+|+..|+.+++++|+++|++++..+..-. +....+..+..|.||||+|+..|+.++
T Consensus 77 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~-----~~~~~~~~~~~g~tpL~~A~~~~~~~~ 151 (256)
T 2etb_A 77 PLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF-----FQKHQGTCFYFGELPLSLAACTKQWDV 151 (256)
T ss_dssp CGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGG-----GSCCSSSCCCSCSSHHHHHHHTTCHHH
T ss_pred hhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccc-----ccccccccccCCCCHHHHHHHcCCHHH
Confidence 346799999999999999999999999988652211000 000001112239999999999999999
Q ss_pred HHhHhh---CCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCc
Q 043678 140 FKLKKT---NNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRK 216 (303)
Q Consensus 140 v~~L~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~ 216 (303)
+++|++ .|++ ++..|.. |
T Consensus 152 v~~Ll~~~~~ga~-------------------------------------------~n~~d~~----------------g 172 (256)
T 2etb_A 152 VTYLLENPHQPAS-------------------------------------------LEATDSL----------------G 172 (256)
T ss_dssp HHHHHHCSSCCCC-------------------------------------------TTCCCTT----------------S
T ss_pred HHHHHhccccCCC-------------------------------------------cCccCCC----------------C
Confidence 999887 6665 3344443 4
Q ss_pred ccHHhHHHh--cCCHH-------HHHHHhhcCCccc------ccccCCCChHHHHHHHhCCchhhHHHhhccc
Q 043678 217 MTALHLAAG--KGDAR-------TVERIISENPKCY------ELVDNRGWNFLHYAMVSFHVGQLRNLLENNS 274 (303)
Q Consensus 217 ~t~L~~a~~--~~~~~-------~v~~Ll~~g~~~~------~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~ 274 (303)
.||||+|+. .++.+ ++++|+++|+++. +.+|..|+||||+|++.|+.+++++|++.+.
T Consensus 173 ~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~ 245 (256)
T 2etb_A 173 NTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF 245 (256)
T ss_dssp CCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence 566999998 78888 9999999999831 8899999999999999999999999998643
No 45
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=7.4e-35 Score=225.61 Aligned_cols=186 Identities=24% Similarity=0.239 Sum_probs=158.8
Q ss_pred CCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHh
Q 043678 34 KNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAF 113 (303)
Q Consensus 34 g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 113 (303)
|.||||+| +..|+.+++++|++. .+...+..+..|.||||+|+..|+.+++++|++.|++.+
T Consensus 2 g~t~L~~A--~~~g~~~~v~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~------------- 63 (228)
T 2dzn_A 2 SNYPLHQA--CMENEFFKVQELLHS---KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN------------- 63 (228)
T ss_dssp -CCHHHHH--HHTTCHHHHHHHHHH---CGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCC-------------
T ss_pred CccHHHHH--HHhCCHHHHHHHHhc---CccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc-------------
Confidence 78999999 999999999999983 444455689999999999999999999999999995543
Q ss_pred hhhhcc-ccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccch
Q 043678 114 RQMIRM-VNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNL 192 (303)
Q Consensus 114 ~~~~~~-~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 192 (303)
++. .+..|.||||+|+..|+.+++++|++.|... .
T Consensus 64 ---~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-----------------------------------------~ 99 (228)
T 2dzn_A 64 ---LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP-----------------------------------------D 99 (228)
T ss_dssp ---GGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCC-----------------------------------------C
T ss_pred ---ccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-----------------------------------------c
Confidence 334 7889999999999999999999988776210 0
Q ss_pred hchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 193 IKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 193 ~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
++..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++.
T Consensus 100 ~~~~~~----------------~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 162 (228)
T 2dzn_A 100 LNKITN----------------QGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGL 162 (228)
T ss_dssp TTCCCT----------------TCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred cccCCc----------------CCCCHHHHHHHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 222333 455779999999999999999999999 589999999999999999999999988885
Q ss_pred ccchh-cccccCCCCCCcHHHHHHhcCCCCC
Q 043678 273 NSLAR-SLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 273 ~~~~~-~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
| ++++.+|..|+||||+|++.++.++
T Consensus 163 ----g~~~~~~~d~~g~t~L~~A~~~~~~~~ 189 (228)
T 2dzn_A 163 ----GKSAVNWQDKQGWTPLFHALAEGHGDA 189 (228)
T ss_dssp ----TCCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred ----CcccccCcCCCCCCHHHHHHHcCCHHH
Confidence 5 7899999999999999999988654
No 46
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=3.8e-35 Score=233.33 Aligned_cols=215 Identities=16% Similarity=0.092 Sum_probs=168.2
Q ss_pred hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhh----ccccCCCcHHHHHHHh---CCHHHHHHHHHHhHHhhc
Q 043678 29 LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLL----QVNAKGDTPLHLAAKF---GHFDIVRVLIERAKLAQR 101 (303)
Q Consensus 29 ~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~----~~~~~g~tpL~~A~~~---~~~~~v~~Ll~~~~~~~~ 101 (303)
..+..|.||||+| +..|+.++++.|++.....+..++ ..+..|.||||+|+.. |+.+++++|++.|++...
T Consensus 8 ~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~ 85 (273)
T 2pnn_A 8 PPRLYDRRSIFDA--VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS 85 (273)
T ss_dssp ---CCCHHHHHHH--HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred CCCcccchHHHHH--HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence 4566699999999 999999999999987666676665 4588999999999987 999999999999987431
Q ss_pred CchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHH
Q 043678 102 GDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAA 181 (303)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (303)
... .........|..|.||||+|+..|+.+++++|++.|++++..+..+....
T Consensus 86 ~~~-------~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~-------------------- 138 (273)
T 2pnn_A 86 LKQ-------FVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKK-------------------- 138 (273)
T ss_dssp HHH-------HHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSS--------------------
T ss_pred hhH-------HhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccccc--------------------
Confidence 100 00111223677999999999999999999999999998777666442100
Q ss_pred HHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhh---cCCcccccccCCCChHHHHHH
Q 043678 182 LPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIIS---ENPKCYELVDNRGWNFLHYAM 258 (303)
Q Consensus 182 ~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~---~g~~~~~~~~~~g~tpl~~A~ 258 (303)
.... .....|.||||+|+..|+.+++++|++ .|++ ++.+|..|+||||+|+
T Consensus 139 ---------~~~~----------------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~ 192 (273)
T 2pnn_A 139 ---------TKGR----------------PGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD-ISARDSVGNTVLHALV 192 (273)
T ss_dssp ---------CSSS----------------CCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHH
T ss_pred ---------cccc----------------ccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHH
Confidence 0001 111257788999999999999999999 8999 5899999999999999
Q ss_pred HhCC---------chhhHHHhhcccchhcccc-------cCCCCCCcHHHHHHhcCCCCC
Q 043678 259 VSFH---------VGQLRNLLENNSLARSLID-------EGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 259 ~~~~---------~~~~~~ll~~~~~~~~~~~-------~~d~~g~tpL~~A~~~~~~~i 302 (303)
..++ .+++++|++ .|++++ .+|..|+||||+|++.|+.++
T Consensus 193 ~~~~~~~~~~~~~~~~v~~Ll~----~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~i 248 (273)
T 2pnn_A 193 EVADNTVDNTKFVTSMYNEILI----LGAKLHPTLKLEEITNRKGLTPLALAASSGKIGV 248 (273)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHH----HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred HccCcchhHHHHHHHHHHHHHH----hhhhcccccccccccCCCCCCHHHHHHHhChHHH
Confidence 9887 456666666 677786 589999999999999998764
No 47
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=4.1e-36 Score=244.60 Aligned_cols=243 Identities=15% Similarity=0.132 Sum_probs=171.3
Q ss_pred CCChhHHHHHHHHHHhhhh-----------------cccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhc-cccCC
Q 043678 12 GNSEPFKDMARDVIESLLT-----------------AKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQ-VNAKG 73 (303)
Q Consensus 12 g~~~~v~~ll~~~~~~~~~-----------------~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~-~~~~g 73 (303)
|+.++|+.|+++|+++... .....+.+|.| +..+..+++++|++ .|.+++. ++..|
T Consensus 58 g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a--~~~~~~~~~~~l~~----~g~dvn~~~d~~g 131 (327)
T 1sw6_A 58 EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVS--FDSLLQEVNDAFPN----TQLNLNIPVDEHG 131 (327)
T ss_dssp HHHHHHHHHHHHHHC-------------------------------C--HHHHHHHHHHHCTT----SCCCSCSCCSTTC
T ss_pred chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHH--HHhhHHHHHHHHHh----cCCCcccccCCCC
Confidence 8899999999998764320 00112234666 66666666666666 8999999 89999
Q ss_pred CcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCc---HHHHHhHhhCC-cc
Q 043678 74 DTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGN---VDLFKLKKTNN-LI 149 (303)
Q Consensus 74 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~---~~~v~~L~~~~-~~ 149 (303)
.||||+|+..|+.++|++|+++|++++ .+|..|+||||+|+..|+ .++++.|++.+ .+
T Consensus 132 ~TpLh~Aa~~g~~~~v~~Ll~~Gad~n------------------~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~ 193 (327)
T 1sw6_A 132 NTPLHWLTSIANLELVKHLVKHGSNRL------------------YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC 193 (327)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTT------------------BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCC------------------CcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcc
Confidence 999999999999999999999998754 889999999999999998 67777777665 67
Q ss_pred eeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccc----cc-cccccCCcccHHhHHH
Q 043678 150 LIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQS----TS-NIADKDRKMTALHLAA 224 (303)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~----~~-~~~~~~~~~t~L~~a~ 224 (303)
+...+..|.++++++...... ....++++.|++.+........ +....+. .+ .......|.||||.|+
T Consensus 194 ~~~~d~~g~tpLh~A~~~~~~-----~g~~~~v~~Ll~~~~~~~~~~~--~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~ 266 (327)
T 1sw6_A 194 LILEDSMNRTILHHIIITSGM-----TGCSAAAKYYLDILMGWIVKKQ--NRPIQSGTNEKESKPNDKNGERKDSILENL 266 (327)
T ss_dssp GGEECTTCCCHHHHHHHHHTS-----TTCHHHHHHHHHHHHHHHHHGG--GCCEEEC----------------CHHHHHC
T ss_pred ccCCCCCCCCHHHHHHHHccc-----cccHHHHHHHHHHHHHHHhccc--chHHHhhhhcccCCcccccccCCChhHHHH
Confidence 889999999999988642110 1225677777766543211100 0000000 00 1111236778899988
Q ss_pred hcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcC
Q 043678 225 GKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVR 298 (303)
Q Consensus 225 ~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~ 298 (303)
. +++|+++ + ++.+|..|+||||+|++.|+.+++++|++ .|++++.+|..|+||||+|++.|
T Consensus 267 ~------~~~Ll~~--~-~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~----~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 267 D------LKWIIAN--M-LNAQDSNGDTCLNIAARLGNISIVDALLD----YGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp S------HHHHHHH--T-TTCCCTTSCCHHHHHHHHCCHHHHHHHHH----TTCCTTCCCTTSCCGGGGTCC--
T ss_pred H------HHHHHHh--C-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCcccCCCCCCHHHHHHhcC
Confidence 5 8999998 3 57799999999999999999999998887 58899999999999999999865
No 48
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.5e-34 Score=219.46 Aligned_cols=183 Identities=19% Similarity=0.245 Sum_probs=158.9
Q ss_pred cCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHH
Q 043678 33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEA 112 (303)
Q Consensus 33 ~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 112 (303)
.+.||||.| +..|+.+.++.|+. ..+.+++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 4 ~~~~~L~~A--~~~g~~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------ 66 (201)
T 3hra_A 4 YEVGALLEA--ANQRDTKKVKEILQ---DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN------------ 66 (201)
T ss_dssp CCTTHHHHH--HHTTCHHHHHHHHT---CTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT------------
T ss_pred ccccHHHHH--HHhccHHHHHHHHH---cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------
Confidence 389999999 99999999999987 2445899999999999999999999999999999998754
Q ss_pred hhhhhccccCCCccHHHHHHhcCcHHHHHhHh-hCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccc
Q 043678 113 FRQMIRMVNNEKNTALHEAVSHGNVDLFKLKK-TNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKN 191 (303)
Q Consensus 113 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 191 (303)
..+..|.||||+|+..|+.+++++|+ ..+.+
T Consensus 67 ------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~------------------------------------------ 98 (201)
T 3hra_A 67 ------LQNSISDSPYLYAGAQGRTEILAYMLKHATPD------------------------------------------ 98 (201)
T ss_dssp ------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC------------------------------------------
T ss_pred ------CCCCCCCCHHHHHHHcCCHHHHHHHHhccCcc------------------------------------------
Confidence 78899999999999999999988865 33222
Q ss_pred hhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcC-CcccccccCCCChHHHHHHHhCC-----chh
Q 043678 192 LIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISEN-PKCYELVDNRGWNFLHYAMVSFH-----VGQ 265 (303)
Q Consensus 192 ~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~tpl~~A~~~~~-----~~~ 265 (303)
++..+..| .||||+|+..|+.+++++|+++| ++ ++.+|..|+||||+|+..++ .++
T Consensus 99 -~~~~~~~g----------------~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~~~ 160 (201)
T 3hra_A 99 -LNKHNRYG----------------GNALIPAAEKGHIDNVKLLLEDGRED-IDFQNDFGYTALIEAVGLREGNQLYQDI 160 (201)
T ss_dssp -TTCCCTTS----------------CCSHHHHHHTTCHHHHHHHHHHCCCC-TTCCCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred -cccccCCC----------------CcHHHHHHHcCCHHHHHHHHHcCCCC-cCCCCCCCCCHHHHHHHhccchhhHHHH
Confidence 34444444 45599999999999999999999 56 68999999999999999988 778
Q ss_pred hHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 266 LRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 266 ~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
+++|++ .|++++.+|..|+||||+|++.|+.++
T Consensus 161 v~~Ll~----~ga~~~~~~~~g~t~l~~A~~~~~~~~ 193 (201)
T 3hra_A 161 VKLLME----NGADQSIKDNSGRTAMDYANQKGYTEI 193 (201)
T ss_dssp HHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHHHH----CCCCCCccCCCCCCHHHHHHHcCCHhH
Confidence 888887 578899999999999999999998764
No 49
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.1e-36 Score=235.50 Aligned_cols=176 Identities=19% Similarity=0.219 Sum_probs=141.1
Q ss_pred hhHHHHHhcCCC-hhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 3 LNFFKAASAGNS-EPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 3 ~~L~~A~~~g~~-~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
+||+.|+..++. .++++|++.|++++..+..|.||||+| +..|+.+++++|++ .+.+++..+..|.||+|+|+
T Consensus 54 t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A--~~~g~~~~v~~Ll~----~~a~~~~~~~~g~t~l~~a~ 127 (269)
T 4b93_B 54 HPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVA--ALHGRADLIPLLLK----HGANAGARNADQAVPLHLAC 127 (269)
T ss_dssp ---------------------CCCCTTCCCTTSCCHHHHH--HHTTCTTHHHHHHH----TTCCTTCCCTTCCCHHHHHH
T ss_pred CHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHH--HHcCcHHHHHHHHh----cCCCcCccCCCCCCcccccc
Confidence 789999988876 488999999998888888899999999 99999999999998 89999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
..++.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|++.|++
T Consensus 128 ~~~~~~~~~~Ll~~g~~~------------------n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad------------ 177 (269)
T 4b93_B 128 QQGHFQVVKCLLDSNAKP------------------NKKDLSGNTPLIYACSGGHHELVALLLQHGAS------------ 177 (269)
T ss_dssp HHTCHHHHHHHHHTTCCS------------------CCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCC------------
T ss_pred ccChHHHHHHHHHCCCCC------------------CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC------------
Confidence 999999999999999874 48899999999999999999999998887775
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCc
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~ 241 (303)
++..+. .|.||||+|+..|+.+++++|+++|++
T Consensus 178 -------------------------------vn~~~~----------------~g~t~Lh~A~~~g~~~~v~~Ll~~Gad 210 (269)
T 4b93_B 178 -------------------------------INASNN----------------KGNTALHEAVIEKHVFVVELLLLHGAS 210 (269)
T ss_dssp -------------------------------TTCBCT----------------TSCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred -------------------------------CCcccc----------------CCCcHHHHHHHcCCHHHHHHHHHCCCC
Confidence 333333 345779999999999999999999999
Q ss_pred ccccccCCCChHHHHHHHhCC
Q 043678 242 CYELVDNRGWNFLHYAMVSFH 262 (303)
Q Consensus 242 ~~~~~~~~g~tpl~~A~~~~~ 262 (303)
++.+|..|+||||+|+++++
T Consensus 211 -~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 211 -VQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp -SCCCCTTSCCSGGGSCTTCH
T ss_pred -CCCcCCCCCCHHHHHHhCCc
Confidence 59999999999999988765
No 50
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=5.9e-35 Score=230.67 Aligned_cols=211 Identities=19% Similarity=0.115 Sum_probs=167.5
Q ss_pred cCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccc----cCCCcHHHHHH---HhCCHHHHHHHHHHhHHhhcCchH
Q 043678 33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVN----AKGDTPLHLAA---KFGHFDIVRVLIERAKLAQRGDEE 105 (303)
Q Consensus 33 ~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~----~~g~tpL~~A~---~~~~~~~v~~Ll~~~~~~~~~~~~ 105 (303)
.|.|+||.| +..|+.+.++.|++++...+.+++..+ ..|.||||+|+ ..|+.+++++|++.|++......
T Consensus 4 ~~~~~L~~A--~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~- 80 (260)
T 3jxi_A 4 FNRPILFDI--VSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE- 80 (260)
T ss_dssp CCHHHHHHH--HHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH-
T ss_pred chHHHHHHH--HHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh-
Confidence 488999999 999999998888887777788888776 66999999999 67999999999999987531110
Q ss_pred HHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHH
Q 043678 106 LENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKL 185 (303)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (303)
.....++..|..|+||||+|+..|+.+++++|++.|++++..+..+..
T Consensus 81 ------~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~-------------------------- 128 (260)
T 3jxi_A 81 ------FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFF-------------------------- 128 (260)
T ss_dssp ------HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCC--------------------------
T ss_pred ------hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcccccccc--------------------------
Confidence 011224456669999999999999999999999999887666543211
Q ss_pred HHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhh---cCCcccccccCCCChHHHHHHHhCC
Q 043678 186 LEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIIS---ENPKCYELVDNRGWNFLHYAMVSFH 262 (303)
Q Consensus 186 l~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~---~g~~~~~~~~~~g~tpl~~A~~~~~ 262 (303)
...+..+.. ..|.||||+|+..|+.+++++|++ .|++ ++.+|..|+||||+|+..++
T Consensus 129 --------~~~~~~~~~-----------~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~ 188 (260)
T 3jxi_A 129 --------QPKDEGGYF-----------YFGELPLSLAACTNQPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIAD 188 (260)
T ss_dssp --------SSSCCCCSC-----------CSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCC
T ss_pred --------Ccccccccc-----------cCCCCHHHHHHHcCCHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHHhcc
Confidence 011111111 267788999999999999999999 8999 58999999999999998877
Q ss_pred ---------chhhHHHhhcccchhccc-------ccCCCCCCcHHHHHHhcCCCCC
Q 043678 263 ---------VGQLRNLLENNSLARSLI-------DEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 263 ---------~~~~~~ll~~~~~~~~~~-------~~~d~~g~tpL~~A~~~~~~~i 302 (303)
.++++.|++ .|+++ +.+|..|+||||+|++.|+.++
T Consensus 189 ~~~~~~~~~~~~v~~Ll~----~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~ 240 (260)
T 3jxi_A 189 NTRENTKFVTKMYDLLLI----KCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGI 240 (260)
T ss_dssp SSHHHHHHHHHHHHHHHH----HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred CchhHHHHHHHHHHHHHH----hCcccccccchhhcccCCCCCHHHHHHHcCCHHH
Confidence 456666655 67777 7799999999999999998764
No 51
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=2.3e-34 Score=210.97 Aligned_cols=159 Identities=24% Similarity=0.276 Sum_probs=138.5
Q ss_pred chhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhh
Q 043678 36 TILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQ 115 (303)
Q Consensus 36 t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~ 115 (303)
+.|+.| ++.|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|++.|++++
T Consensus 6 ~~L~~A--a~~G~~~~v~~Ll~----~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~--------------- 64 (169)
T 4gpm_A 6 KRLIEA--AENGNKDRVKDLIE----NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN--------------- 64 (169)
T ss_dssp HHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---------------
T ss_pred HHHHHH--HHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh---------------
Confidence 368999 99999999999999 899999999999999999999999999999999998754
Q ss_pred hhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhch
Q 043678 116 MIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKE 195 (303)
Q Consensus 116 ~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 195 (303)
.+|..|+||||+|+..|+.+++++|++.|++ ++.
T Consensus 65 ---~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad-------------------------------------------vn~ 98 (169)
T 4gpm_A 65 ---AKDSDGRTPLHHAAENGHKEVVKLLISKGAD-------------------------------------------VNA 98 (169)
T ss_dssp ---CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------------------------------------------TTC
T ss_pred ---hhccCCCCHHHHHHHcCCHHHHHHHHHCcCC-------------------------------------------CCC
Confidence 8899999999999999999999998888775 333
Q ss_pred hhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccc
Q 043678 196 TDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSL 275 (303)
Q Consensus 196 ~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~ 275 (303)
++.+ |.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|++.|+.+++++|++
T Consensus 99 ~d~~----------------G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~---- 157 (169)
T 4gpm_A 99 KDSD----------------GRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEVVKLLEK---- 157 (169)
T ss_dssp CCTT----------------SCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHT----
T ss_pred CCCC----------------CCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHH----
Confidence 4443 45669999999999999999999999 58999999999999999999999888888
Q ss_pred hhccccc
Q 043678 276 ARSLIDE 282 (303)
Q Consensus 276 ~~~~~~~ 282 (303)
.|++++.
T Consensus 158 ~GA~ie~ 164 (169)
T 4gpm_A 158 QGGWLEH 164 (169)
T ss_dssp C------
T ss_pred CCCCcCC
Confidence 4666653
No 52
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=1.9e-34 Score=227.69 Aligned_cols=194 Identities=17% Similarity=0.195 Sum_probs=156.9
Q ss_pred ChhHHHHHhcCCChhHHHHHH----HHHHhhhhc----ccCCchhhhhhhh---cccchhhHHHHHHHHHhCc-------
Q 043678 2 DLNFFKAASAGNSEPFKDMAR----DVIESLLTA----KAKNTILHINIIS---SERENVSTKFVEEILEKCP------- 63 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~----~~~~~~~~~----~~g~t~Lh~A~~~---~~~~~~~~~~Ll~~~~~~~------- 63 (303)
.++||.|+..|+.+.++.|++ .+.+....+ ..|.||||+| + ..|+.+++++|++.-...+
T Consensus 6 ~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A--~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 83 (260)
T 3jxi_A 6 RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKA--LLNLSAGRNDTIPILLDIAEKTGNMREFIN 83 (260)
T ss_dssp HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHH--HTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHH--HHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence 379999999999997776666 555544333 5599999999 6 7899999999999422111
Q ss_pred hhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhcccc--------------CCCccHHH
Q 043678 64 ALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVN--------------NEKNTALH 129 (303)
Q Consensus 64 ~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~t~l~ 129 (303)
...+..+..|.||||+|+..|+.+++++|+++|++++ ..+ ..|.||||
T Consensus 84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~------------------~~~~~~~~~~~~~~~~~~~g~tpL~ 145 (260)
T 3jxi_A 84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH------------------AQARGRFFQPKDEGGYFYFGELPLS 145 (260)
T ss_dssp CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT------------------CCCEECCCSSSCCCCSCCSCSSHHH
T ss_pred ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC------------------ccccccccCcccccccccCCCCHHH
Confidence 2234455689999999999999999999999998865 455 68999999
Q ss_pred HHHhcCcHHHHHhHhh---CCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccc
Q 043678 130 EAVSHGNVDLFKLKKT---NNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQS 206 (303)
Q Consensus 130 ~A~~~~~~~~v~~L~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~ 206 (303)
+|+..|+.+++++|++ .|++ ++..|..
T Consensus 146 ~A~~~g~~~~v~~Ll~~~~~ga~-------------------------------------------~~~~d~~------- 175 (260)
T 3jxi_A 146 LAACTNQPHIVHYLTENGHKQAD-------------------------------------------LRRQDSR------- 175 (260)
T ss_dssp HHHHTTCHHHHHHHHHCSSCCCC-------------------------------------------TTCCCTT-------
T ss_pred HHHHcCCHHHHHHHHhccccCCC-------------------------------------------CcccCCC-------
Confidence 9999999999999887 6665 3344443
Q ss_pred cccccccCCcccHHhHHHhcCC---------HHHHHHHhhcCCccc------ccccCCCChHHHHHHHhCCchhhHHHhh
Q 043678 207 TSNIADKDRKMTALHLAAGKGD---------ARTVERIISENPKCY------ELVDNRGWNFLHYAMVSFHVGQLRNLLE 271 (303)
Q Consensus 207 ~~~~~~~~~~~t~L~~a~~~~~---------~~~v~~Ll~~g~~~~------~~~~~~g~tpl~~A~~~~~~~~~~~ll~ 271 (303)
|.||||+|+..++ .+++++|+++|+++. +.+|..|+||||+|++.|+.+++++|++
T Consensus 176 ---------g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~ 246 (260)
T 3jxi_A 176 ---------GNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246 (260)
T ss_dssp ---------SCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ---------CCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 4566999998777 799999999999842 6799999999999999999999999999
Q ss_pred ccc
Q 043678 272 NNS 274 (303)
Q Consensus 272 ~~~ 274 (303)
.+.
T Consensus 247 ~g~ 249 (260)
T 3jxi_A 247 REI 249 (260)
T ss_dssp HHH
T ss_pred hCC
Confidence 643
No 53
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=3.4e-34 Score=230.90 Aligned_cols=235 Identities=19% Similarity=0.129 Sum_probs=189.1
Q ss_pred HHHhcCCChhHHHHHHHHHHhh---------hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHH
Q 043678 7 KAASAGNSEPFKDMARDVIESL---------LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPL 77 (303)
Q Consensus 7 ~A~~~g~~~~v~~ll~~~~~~~---------~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL 77 (303)
.++..|..+.++.++....... ..+..|.||||.| +..|+.+++++|++ .|.+++..+..|.|||
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L 77 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAA--CSSGDTEEVLRLLE----RGADINYANVDGLTAL 77 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHH--HHHTCHHHHHHHHH----HCCCTTCBCTTCCBHH
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHH--HHcCCHHHHHHHHH----cCCCCcccCCCCCCHH
Confidence 4677788888888887733211 1122467999999 99999999999998 6899999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccc
Q 043678 78 HLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDE 157 (303)
Q Consensus 78 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~ 157 (303)
|+|+..|+.+++++|+++|++++ ..|..|.||||+|+..|+.+++++|++.|+++...+..|
T Consensus 78 ~~A~~~g~~~~v~~Ll~~ga~~~------------------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g 139 (299)
T 1s70_B 78 HQACIDDNVDMVKFLVENGANIN------------------QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEG 139 (299)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred HHHHHcCCHHHHHHHHHCCCCCC------------------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCC
Confidence 99999999999999999998754 788999999999999999999999999999999999999
Q ss_pred cchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhh
Q 043678 158 KTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIIS 237 (303)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~ 237 (303)
.++++.+... ...++++.++...+..++.....+. ++++ ..+..++.
T Consensus 140 ~t~l~~A~~~---------~~~~~~~~ll~~~~~~~~~~~~~~~----------------~~~~--------~~~~~~l~ 186 (299)
T 1s70_B 140 DTPLDIAEEE---------AMEELLQNEVNRQGVDIEAARKEEE----------------RIML--------RDARQWLN 186 (299)
T ss_dssp CCHHHHCCSH---------HHHHHHHHHHHHHTCCHHHHHHHHH----------------HHHH--------HHHHHHHH
T ss_pred CCHHHHHHhc---------chHHHHHHHHhhcCCCchhhhhhhh----------------hHHH--------HHHHHHHh
Confidence 9998887643 2256777777665544443333221 1222 23455666
Q ss_pred cCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 238 ENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 238 ~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
.+.......+..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.++
T Consensus 187 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~g~d~~~~d~~g~tpL~~A~~~~~~~~ 247 (299)
T 1s70_B 187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ----ARYDVNIKDYDGWTPLHAAAHWGKEEA 247 (299)
T ss_dssp HTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT----TTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred ccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHH----cCCCCCCcCCCCCcHHHHHHhcCCHHH
Confidence 6665556677899999999999999999988887 578899999999999999999998654
No 54
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=100.00 E-value=3.3e-33 Score=222.03 Aligned_cols=184 Identities=19% Similarity=0.182 Sum_probs=123.3
Q ss_pred CCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhH-HhhcCchHHHHHHHH
Q 043678 34 KNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAK-LAQRGDEELENRIEA 112 (303)
Q Consensus 34 g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~~~~~ 112 (303)
..+++|.| +..++.+.++.++... ....++.+|..|.||||+|+..|+.+++++|++.|+ ++
T Consensus 76 ~~~~l~~a--~~~~~~~~~~~l~~~~--~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~------------- 138 (276)
T 4hbd_A 76 CRSDAHPE--LVRRHLVTFRAMSARL--LDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKV------------- 138 (276)
T ss_dssp HSTTCCHH--HHHHHHHHHHHHCHHH--HHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCT-------------
T ss_pred hccCCCHH--HHHHHHHHHHHHHHHH--HhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC-------------
Confidence 56677777 7777777777776521 122366677777777777777777777777777776 43
Q ss_pred hhhhhccccCCCccHHHHHH-----hcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHH
Q 043678 113 FRQMIRMVNNEKNTALHEAV-----SHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLE 187 (303)
Q Consensus 113 ~~~~~~~~~~~~~t~l~~A~-----~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 187 (303)
+..+..|.||||+|+ ..++.+++++|+..|..
T Consensus 139 -----~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~-------------------------------------- 175 (276)
T 4hbd_A 139 -----DKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNI-------------------------------------- 175 (276)
T ss_dssp -----TCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCT--------------------------------------
T ss_pred -----CCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCC--------------------------------------
Confidence 366777777777777 55667777776655532
Q ss_pred hccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhH
Q 043678 188 KKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLR 267 (303)
Q Consensus 188 ~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~ 267 (303)
.+..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.++++
T Consensus 176 -----~~~~~~----------------~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~ 233 (276)
T 4hbd_A 176 -----NAKASQ----------------AGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAG 233 (276)
T ss_dssp -----TCCCTT----------------TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred -----ccccCC----------------CCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHH
Confidence 122222 234557777777777777777777777 4677777777777777777777666
Q ss_pred HHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 268 NLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 268 ~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
+|++. .|++++.+|..|+||||+|++.|+.++
T Consensus 234 ~Ll~~---~gad~~~~d~~g~TpL~~A~~~g~~~i 265 (276)
T 4hbd_A 234 LLLAV---PSCDISLTDRDGSTALMVALDAGQSEI 265 (276)
T ss_dssp HHHTS---TTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHhc---CCCCCcCcCCCCCCHHHHHHHcCCHHH
Confidence 66663 466677777777777777777776543
No 55
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=3.3e-34 Score=233.38 Aligned_cols=198 Identities=15% Similarity=0.096 Sum_probs=154.4
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhhh-hcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHh
Q 043678 5 FFKAASAGNSEPFKDMARDVIESLL-TAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKF 83 (303)
Q Consensus 5 L~~A~~~g~~~~v~~ll~~~~~~~~-~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~ 83 (303)
++.|+..+..++++.|++.|++.+. .+..|.||||+| +..|+.+++++|++ .|++++.++..|.||||+|+..
T Consensus 101 ~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~A--a~~g~~~~v~~Ll~----~Gad~n~~d~~g~TpLh~A~~~ 174 (327)
T 1sw6_A 101 QHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWL--TSIANLELVKHLVK----HGSNRLYGDNMGESCLVKAVKS 174 (327)
T ss_dssp ---CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTBCCTTCCCHHHHHHHS
T ss_pred hHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHH--HHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHh
Confidence 3556666667888888888888777 788899999999 99999999999999 8999999999999999999999
Q ss_pred CC---HHHHHHHHHHh-HHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHh----cCcHHHHHhHhhC---------
Q 043678 84 GH---FDIVRVLIERA-KLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVS----HGNVDLFKLKKTN--------- 146 (303)
Q Consensus 84 ~~---~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~----~~~~~~v~~L~~~--------- 146 (303)
|+ .++++.|++.+ ++ ++.+|..|+||||+|+. .|+.+++++|++.
T Consensus 175 g~~~~~~~~~~ll~~~~~~------------------~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~ 236 (327)
T 1sw6_A 175 VNNYDSGTFEALLDYLYPC------------------LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ 236 (327)
T ss_dssp SHHHHTTCHHHHHHHHGGG------------------GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGG
T ss_pred cccccHHHHHHHHHhhhcc------------------ccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhccc
Confidence 98 78899999887 33 55899999999999999 8999999998766
Q ss_pred -----------CcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCC
Q 043678 147 -----------NLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDR 215 (303)
Q Consensus 147 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~ 215 (303)
+++++..+..|.++++.+.. +++|+... ++..+. .
T Consensus 237 ~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~---------------~~~Ll~~~---~n~~d~----------------~ 282 (327)
T 1sw6_A 237 NRPIQSGTNEKESKPNDKNGERKDSILENLD---------------LKWIIANM---LNAQDS----------------N 282 (327)
T ss_dssp GCCEEEC----------------CHHHHHCS---------------HHHHHHHT---TTCCCT----------------T
T ss_pred chHHHhhhhcccCCcccccccCCChhHHHHH---------------HHHHHHhC---CCCCCC----------------C
Confidence 56666666666666665541 45555541 344444 4
Q ss_pred cccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhC
Q 043678 216 KMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSF 261 (303)
Q Consensus 216 ~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~ 261 (303)
|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|++.|
T Consensus 283 G~TpLh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 283 GDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp SCCHHHHHHHHCCHHHHHHHHHTTCC-TTCCCTTSCCGGGGTCC--
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcC
Confidence 56779999999999999999999999 5999999999999998764
No 56
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=100.00 E-value=9.6e-33 Score=219.38 Aligned_cols=186 Identities=20% Similarity=0.190 Sum_probs=165.7
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHH--hhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCch-hhhccccCCCcHHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIE--SLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPA-LLLQVNAKGDTPLHL 79 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~--~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~-~~~~~~~~g~tpL~~ 79 (303)
++++.|+..|+.+.++.+++.+.+ .+..|..|.||||+| +..|+.+++++|++ .|. +++..+..|.||||+
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~tpL~~ 151 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYS--VSHANFPVVQQLLD----SGVCKVDKQNRAGYSPIML 151 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TSCCCTTCCCTTSCCHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHH--HHCCCHHHHHHHHH----CCCCcCCCCCCCCCCHHHH
Confidence 578899999999999999999665 557778899999999 99999999999999 676 999999999999999
Q ss_pred HH-----HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeec
Q 043678 80 AA-----KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRD 154 (303)
Q Consensus 80 A~-----~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~ 154 (303)
|+ ..++.+++++|++.|... +..+..|.||||+|+..|+.+++++|++.|++
T Consensus 152 a~~~~~~~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad----- 208 (276)
T 4hbd_A 152 TALATLKTQDDIETVLQLFRLGNIN------------------AKASQAGQTALMLAVSHGRVDVVKALLACEAD----- 208 (276)
T ss_dssp GGGCCCCSHHHHHHHHHHHHHSCTT------------------CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----
T ss_pred HHHHHhhhhhhHHHHHHHHHcCCCc------------------cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-----
Confidence 99 668899999999999764 47888999999999999999999998877775
Q ss_pred ccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHH
Q 043678 155 SDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVER 234 (303)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~ 234 (303)
++..|. .|.||||+|+..|+.+++++
T Consensus 209 --------------------------------------~n~~d~----------------~G~TpLh~A~~~g~~~iv~~ 234 (276)
T 4hbd_A 209 --------------------------------------VNVQDD----------------DGSTALMCACEHGHKEIAGL 234 (276)
T ss_dssp --------------------------------------TTCCCT----------------TSCCHHHHHHHHTCHHHHHH
T ss_pred --------------------------------------CCCCCC----------------CCCCHHHHHHHCCCHHHHHH
Confidence 334444 45566999999999999999
Q ss_pred Hhh-cCCcccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 235 IIS-ENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 235 Ll~-~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
|++ .|++ ++.+|..|+||||+|+..|+.+++++|++.
T Consensus 235 Ll~~~gad-~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 235 LLAVPSCD-ISLTDRDGSTALMVALDAGQSEIASMLYSR 272 (276)
T ss_dssp HHTSTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhcCCCC-CcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 999 8998 589999999999999999999999999986
No 57
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.98 E-value=5.5e-32 Score=200.18 Aligned_cols=170 Identities=19% Similarity=0.186 Sum_probs=140.4
Q ss_pred CCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHh
Q 043678 34 KNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAF 113 (303)
Q Consensus 34 g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 113 (303)
+.||||+| +..|+.+++++|++. .+..++.++..|.||||+|+..|+.+++++|+++|++++
T Consensus 2 ~~~~L~~A--~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------- 63 (172)
T 3v30_A 2 DSLSIHQL--AAQGELDQLKEHLRK---GDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH------------- 63 (172)
T ss_dssp --CCHHHH--HHTTCHHHHHHHHTT---CSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-------------
T ss_pred chhhHHHH--HHcCCHHHHHHHHHc---CcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCch-------------
Confidence 57899999 999999999999882 444488899999999999999999999999999988754
Q ss_pred hhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchh
Q 043678 114 RQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLI 193 (303)
Q Consensus 114 ~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 193 (303)
..+..|.||||+|+..++.+++++|++.|++ +
T Consensus 64 -----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------------------------------------------~ 95 (172)
T 3v30_A 64 -----ILAKERESALSLASTGGYTDIVGLLLERDVD-------------------------------------------I 95 (172)
T ss_dssp -----CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-------------------------------------------T
T ss_pred -----hhcccCCCHHHHHHHCCCHHHHHHHHHcCCC-------------------------------------------C
Confidence 7888999999999999999999998877765 2
Q ss_pred chhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcc
Q 043678 194 KETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENN 273 (303)
Q Consensus 194 ~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~ 273 (303)
+..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++
T Consensus 96 ~~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~-- 156 (172)
T 3v30_A 96 NIYDW----------------NGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQVIEN-- 156 (172)
T ss_dssp TCCCT----------------TSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH--
T ss_pred CCCCC----------------CCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHhCcHHHHHHHHH--
Confidence 23333 455779999999999999999999999 58899999999999999999888888888
Q ss_pred cchhcccccCCCCCCcH
Q 043678 274 SLARSLIDEGDAKGNTP 290 (303)
Q Consensus 274 ~~~~~~~~~~d~~g~tp 290 (303)
.++++...+..|.||
T Consensus 157 --~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 157 --HILKLFQSNLVPADP 171 (172)
T ss_dssp --HHHHHSCC-------
T ss_pred --HHHHHhcccCCCCCC
Confidence 467788888888887
No 58
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.98 E-value=1.1e-31 Score=202.18 Aligned_cols=160 Identities=14% Similarity=0.089 Sum_probs=139.6
Q ss_pred hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHH
Q 043678 29 LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELEN 108 (303)
Q Consensus 29 ~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~ 108 (303)
..+..|.||||+| +..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 30 ~~d~~g~t~L~~A--~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--------- 94 (192)
T 2rfm_A 30 YRDSYNRTPLMVA--CMLGMENAIDKLVE----NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV--------- 94 (192)
T ss_dssp CCCTTCCCHHHHH--HHHTCGGGHHHHHH----HHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT---------
T ss_pred CcCCCCCCHHHHH--HHcCCHHHHHHHHH----hccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC---------
Confidence 5677799999999 99999999999998 57888999999999999999999999999999998774
Q ss_pred HHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHh
Q 043678 109 RIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEK 188 (303)
Q Consensus 109 ~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 188 (303)
+..|..|.||||+|+..++.+++++|++.|+++
T Consensus 95 ---------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------------------------------------- 127 (192)
T 2rfm_A 95 ---------NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV-------------------------------------- 127 (192)
T ss_dssp ---------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS--------------------------------------
T ss_pred ---------CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC--------------------------------------
Confidence 478889999999999999999999988777652
Q ss_pred ccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHH
Q 043678 189 KKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRN 268 (303)
Q Consensus 189 ~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ 268 (303)
+..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++
T Consensus 128 -----~~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~v~~ 185 (192)
T 2rfm_A 128 -----NDRNL----------------EGETPLIVASKYGRSEIVKKLLELGAD-ISARDLTGLTAEASARIFGRQEVIKI 185 (192)
T ss_dssp -----SCCCT----------------TCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred -----CCCCC----------------CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCcHHHHHH
Confidence 23333 345679999999999999999999999 58899999999999999999999999
Q ss_pred Hhhc
Q 043678 269 LLEN 272 (303)
Q Consensus 269 ll~~ 272 (303)
|++.
T Consensus 186 Ll~~ 189 (192)
T 2rfm_A 186 FTEV 189 (192)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8875
No 59
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.98 E-value=6.3e-35 Score=225.29 Aligned_cols=196 Identities=16% Similarity=0.034 Sum_probs=150.9
Q ss_pred HHHHHHHHHHhh---hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHH
Q 043678 17 FKDMARDVIESL---LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLI 93 (303)
Q Consensus 17 v~~ll~~~~~~~---~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll 93 (303)
++.|++++.++. ..+.++.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+..|+.+++++|+
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll 74 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDA--ALTGELEVVQQAVK----EMNDPSQPNEEGITALHNAICGANYSIVDFLI 74 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHH--HHHTCHHHHHHHHH----HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CeehhccCCCCccccccccchhHHHHHH--HHcCCHHHHHHHHh----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 467788877654 2334577889999 99999999999998 68899999999999999999999999999999
Q ss_pred HHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHh
Q 043678 94 ERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRI 173 (303)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (303)
+.|+++ +.+|..|.||||+|+..|+.+++++|++.|++++..+
T Consensus 75 ~~ga~~------------------n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~------------------- 117 (229)
T 2vge_A 75 TAGANV------------------NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT------------------- 117 (229)
T ss_dssp HTTCCT------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC-------------------
T ss_pred HCCCCC------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc-------------------
Confidence 998875 4888999999999999999999999888877532221
Q ss_pred hhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHH--HhcCCHHHHHHHhhcCCcccccccCCCC
Q 043678 174 QTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLA--AGKGDARTVERIISENPKCYELVDNRGW 251 (303)
Q Consensus 174 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a--~~~~~~~~v~~Ll~~g~~~~~~~~~~g~ 251 (303)
+..| .||||+| +..|+.+++++|+++|++ ++..|..|.
T Consensus 118 -----------------------~~~g----------------~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~~ 157 (229)
T 2vge_A 118 -----------------------LSDG----------------ATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAV 157 (229)
T ss_dssp -----------------------SSTT----------------CCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGEE
T ss_pred -----------------------CCCC----------------CCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCch
Confidence 1234 4557887 888999999999999998 588888888
Q ss_pred hHHHHHHHhCCchhhHHHhhcccchhcc--cccCCCCCCcHHHHHHhcCCCCC
Q 043678 252 NFLHYAMVSFHVGQLRNLLENNSLARSL--IDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 252 tpl~~A~~~~~~~~~~~ll~~~~~~~~~--~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
||++.++..... +.+...|++ ++.+|..|+||||+|++.|+.++
T Consensus 158 ~~l~~~~~~~~~-------~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~ 203 (229)
T 2vge_A 158 YALWDYSAEFGD-------ELSFREGESVTVLRRDGPEETDWWWAALHGQEGY 203 (229)
T ss_dssp EESSCBCCSSTT-------BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEE
T ss_pred HHHHHHhhcccc-------ccCccccccccccccCCCcccHHHHHHHcCCcce
Confidence 998865444332 233445666 77889999999999999888764
No 60
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=2.9e-31 Score=195.28 Aligned_cols=158 Identities=19% Similarity=0.212 Sum_probs=139.0
Q ss_pred cCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHH
Q 043678 33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEA 112 (303)
Q Consensus 33 ~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 112 (303)
.|.||||.| +..|+.+++++|++ .+.+++.++..|.||||+|+..|+.+++++|+++|++++
T Consensus 2 ~~~t~L~~A--~~~g~~~~v~~ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------ 63 (167)
T 3v31_A 2 ANSLSVHQL--AAQGEMLYLATRIE----QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ------------ 63 (167)
T ss_dssp TTCCCHHHH--HHTTCHHHHHHHHH----HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------
T ss_pred CCcchHHHH--HHCCCHHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC------------
Confidence 489999999 99999999999998 578899999999999999999999999999999987754
Q ss_pred hhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccch
Q 043678 113 FRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNL 192 (303)
Q Consensus 113 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 192 (303)
..+..|.||||+|+..++.+++++|++.|++
T Consensus 64 ------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------------------------- 94 (167)
T 3v31_A 64 ------LLGKGRESALSLACSKGYTDIVKMLLDCGVD------------------------------------------- 94 (167)
T ss_dssp ------CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-------------------------------------------
T ss_pred ------CcCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-------------------------------------------
Confidence 7888999999999999999999987776654
Q ss_pred hchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 193 IKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 193 ~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
++..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|++.
T Consensus 95 ~~~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (167)
T 3v31_A 95 VNEYDW----------------NGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQVIESH 157 (167)
T ss_dssp TTCCCT----------------TSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCcCCC----------------CCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence 233333 455779999999999999999999999 588999999999999999999999999886
Q ss_pred cc
Q 043678 273 NS 274 (303)
Q Consensus 273 ~~ 274 (303)
+.
T Consensus 158 ~~ 159 (167)
T 3v31_A 158 LL 159 (167)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 61
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=2.2e-31 Score=200.52 Aligned_cols=157 Identities=18% Similarity=0.078 Sum_probs=138.0
Q ss_pred hhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhH
Q 043678 64 ALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLK 143 (303)
Q Consensus 64 ~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L 143 (303)
..++.+|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..++.+++++|
T Consensus 26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~L 87 (192)
T 2rfm_A 26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL------------------EDKDIEGSTALIWAVKNNRLGIAEKL 87 (192)
T ss_dssp HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc------------------ccccccCccHHHHHHHcCCHHHHHHH
Confidence 346778999999999999999999999999998774 47889999999999999999999998
Q ss_pred hhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHH
Q 043678 144 KTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLA 223 (303)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a 223 (303)
++.|++ ++..+. .|.||||+|
T Consensus 88 l~~g~~-------------------------------------------~~~~~~----------------~g~t~L~~A 108 (192)
T 2rfm_A 88 LSKGSN-------------------------------------------VNTKDF----------------SGKTPLMWS 108 (192)
T ss_dssp HHHTCC-------------------------------------------TTCCCT----------------TSCCHHHHH
T ss_pred HHCCCC-------------------------------------------CCCCCC----------------CCCcHHHHH
Confidence 776664 223333 455779999
Q ss_pred HhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 224 AGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 224 ~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
+..|+.+++++|+++|++ ++.+|..|.||||+|+..++.+++++|++ .|++++.+|..|+||||+|+..++.++
T Consensus 109 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~A~~~~~~~~ 182 (192)
T 2rfm_A 109 IIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLE----LGADISARDLTGLTAEASARIFGRQEV 182 (192)
T ss_dssp HHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHhCcHHH
Confidence 999999999999999999 58999999999999999999999998887 478899999999999999999998764
No 62
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=1.1e-31 Score=198.46 Aligned_cols=168 Identities=20% Similarity=0.106 Sum_probs=141.9
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHH-hhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIE-SLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A 80 (303)
.+|||.|+..|+.++++.|++.+.+ ....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 76 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWA--SAFGEIETVRFLLE----WGADPHILAKERESALSLA 76 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHH--HHTTCHHHHHHHHH----HTCCTTCCCTTCCCHHHHH
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCchhhcccCCCHHHHH
Confidence 3799999999999999999999765 446677799999999 99999999999998 6899999999999999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
+..|+.+++++|+++|+++ +..|..|.||||+|+..++.+++++|++.|+++
T Consensus 77 ~~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~---------- 128 (172)
T 3v30_A 77 STGGYTDIVGLLLERDVDI------------------NIYDWNGGTPLLYAVRGNHVKCVEALLARGADL---------- 128 (172)
T ss_dssp HHTTCHHHHHHHHTTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT----------
T ss_pred HHCCCHHHHHHHHHcCCCC------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc----------
Confidence 9999999999999998874 488899999999999999999999988877652
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCC
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENP 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~ 240 (303)
+..+. .|.||||+|+..|+.+++++|+++|+
T Consensus 129 ---------------------------------~~~~~----------------~g~t~l~~A~~~~~~~~~~~L~~~~~ 159 (172)
T 3v30_A 129 ---------------------------------TTEAD----------------SGYTPMDLAVALGYRKVQQVIENHIL 159 (172)
T ss_dssp ---------------------------------TCCCT----------------TSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ---------------------------------cccCC----------------CCCCHHHHHHHhCcHHHHHHHHHHHH
Confidence 33333 34577999999999999999999999
Q ss_pred cccccccCCCChH
Q 043678 241 KCYELVDNRGWNF 253 (303)
Q Consensus 241 ~~~~~~~~~g~tp 253 (303)
+. ...+..|.||
T Consensus 160 ~~-~~~~~~~~~p 171 (172)
T 3v30_A 160 KL-FQSNLVPADP 171 (172)
T ss_dssp HH-SCC-------
T ss_pred HH-hcccCCCCCC
Confidence 84 6778888776
No 63
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=2.4e-31 Score=194.73 Aligned_cols=157 Identities=18% Similarity=0.159 Sum_probs=138.2
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
++||+.|+..|+.+++++|++++++....+..|.||||+| +. |+.+++++|++ .|.+++.++..|.||||+|+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A--~~-~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~ 78 (162)
T 1ihb_A 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM--KL-GNPEIARRLLL----RGANPDLKDRTGFAVIHDAA 78 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHC--CS-SCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred hhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHH--Hc-CcHHHHHHHHH----cCCCCCCCCCCCCCHHHHHH
Confidence 5899999999999999999999888777788899999999 88 99999999999 79999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+.+
T Consensus 79 ~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------ 128 (162)
T 1ihb_A 79 RAGFLDTLQTLLEFQADV------------------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS------------ 128 (162)
T ss_dssp HHTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC------------
T ss_pred HcCCHHHHHHHHHcCCCC------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC------------
Confidence 999999999999998774 48889999999999999999999887766553
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCc
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~ 241 (303)
.++..+. .|.||||+|+..|+.+++++|+++|++
T Consensus 129 ------------------------------~~~~~~~----------------~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 129 ------------------------------NVGHRNH----------------KGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp ------------------------------CTTCCCT----------------TSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred ------------------------------CCCCcCC----------------CCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 1233333 455779999999999999999999985
No 64
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=3.1e-31 Score=194.18 Aligned_cols=156 Identities=17% Similarity=0.143 Sum_probs=139.6
Q ss_pred CCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHh
Q 043678 34 KNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAF 113 (303)
Q Consensus 34 g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 113 (303)
..||||+| +..|+.+++++|++ .+.+++.++..|.||||+|+. |+.+++++|+++|++++
T Consensus 5 ~~~~L~~A--~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~------------- 64 (162)
T 1ihb_A 5 WGNELASA--AARGDLEQLTSLLQ----NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPD------------- 64 (162)
T ss_dssp CHHHHHHH--HHHTCHHHHHHHTT----SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT-------------
T ss_pred HhhHHHHH--HHcCCHHHHHHHHh----CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCC-------------
Confidence 67899999 99999999999998 799999999999999999999 99999999999988754
Q ss_pred hhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchh
Q 043678 114 RQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLI 193 (303)
Q Consensus 114 ~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 193 (303)
.++..|.||||+|+..|+.+++++|++.|++ +
T Consensus 65 -----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------------------------------------------~ 96 (162)
T 1ihb_A 65 -----LKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-------------------------------------------V 96 (162)
T ss_dssp -----CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------------------------------------------T
T ss_pred -----CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------------------------------------------C
Confidence 7889999999999999999999998877665 2
Q ss_pred chhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcc
Q 043678 194 KETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENN 273 (303)
Q Consensus 194 ~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~ 273 (303)
+..+. .|.||||+|+..|+.+++++|+++|++.++..+..|.||||+|+..++.+++++|++.+
T Consensus 97 ~~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 160 (162)
T 1ihb_A 97 NIEDN----------------EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160 (162)
T ss_dssp TCCCT----------------TSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred CCcCC----------------CCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence 33333 34577999999999999999999999866899999999999999999999999998854
No 65
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=1.8e-30 Score=191.40 Aligned_cols=157 Identities=23% Similarity=0.224 Sum_probs=136.9
Q ss_pred ccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHH
Q 043678 32 KAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIE 111 (303)
Q Consensus 32 ~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~ 111 (303)
..+.++|++| +..|+.+++++|++ .|.+++.++..|.||||+|+..|+.+++++|+++|+++
T Consensus 12 ~~~~~~l~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------ 73 (169)
T 2y1l_E 12 SDLGKKLLEA--ARAGRDDEVRILMA----NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV------------ 73 (169)
T ss_dssp -CHHHHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------------
T ss_pred CcccchHHHH--HHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------
Confidence 3367899999 99999999999998 78999999999999999999999999999999998774
Q ss_pred HhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccc
Q 043678 112 AFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKN 191 (303)
Q Consensus 112 ~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 191 (303)
+..+..|.||||+|+..|+.+++++|++.|+++
T Consensus 74 ------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~----------------------------------------- 106 (169)
T 2y1l_E 74 ------NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV----------------------------------------- 106 (169)
T ss_dssp ------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-----------------------------------------
T ss_pred ------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------------------------------------
Confidence 478889999999999999999999988776642
Q ss_pred hhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhh
Q 043678 192 LIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLE 271 (303)
Q Consensus 192 ~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~ 271 (303)
+..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..++.+++++|++
T Consensus 107 --~~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 167 (169)
T 2y1l_E 107 --NANDM----------------EGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 167 (169)
T ss_dssp --TCCCT----------------TSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred --CCCCC----------------CCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 22233 355779999999999999999999999 58899999999999999999999999887
Q ss_pred c
Q 043678 272 N 272 (303)
Q Consensus 272 ~ 272 (303)
.
T Consensus 168 ~ 168 (169)
T 2y1l_E 168 L 168 (169)
T ss_dssp C
T ss_pred c
Confidence 5
No 66
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=1.3e-30 Score=192.08 Aligned_cols=155 Identities=23% Similarity=0.284 Sum_probs=138.5
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.++|+.|+..|+.+++++|+++|++....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+
T Consensus 15 ~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~ 88 (169)
T 2y1l_E 15 GKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLA--AFNGHLEIVEVLLK----NGADVNAVDHAGMTPLRLAA 88 (169)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred cchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHH
Confidence 3789999999999999999999988777788899999999 99999999999999 79999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
..|+.+++++|+++|+++ +..|..|.||||+|+..++.+++++|++.|+++
T Consensus 89 ~~~~~~~~~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------- 139 (169)
T 2y1l_E 89 LFGHLEIVEVLLKNGADV------------------NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV----------- 139 (169)
T ss_dssp HTTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-----------
T ss_pred HcCCHHHHHHHHHcCCCC------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------
Confidence 999999999999998874 478899999999999999999999988877652
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcC
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISEN 239 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g 239 (303)
+..+. .|.|||++|+..|+.+++++|++.|
T Consensus 140 --------------------------------~~~~~----------------~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 140 --------------------------------NAQDK----------------FGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp --------------------------------TCCCT----------------TSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred --------------------------------CCcCC----------------CCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 23333 4557799999999999999999876
No 67
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.97 E-value=6.9e-33 Score=213.87 Aligned_cols=183 Identities=15% Similarity=0.068 Sum_probs=153.2
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAK 82 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~ 82 (303)
||||.|+..|+.+++++|++.|++....+..|.||||+| +..|+.+++++|++ .|.+++.+|..|.||||+|+.
T Consensus 23 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A--~~~g~~~~v~~Ll~----~ga~~n~~d~~g~tpLh~A~~ 96 (229)
T 2vge_A 23 VLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA--ICGANYSIVDFLIT----AGANVNSPDSHGWTPLHCAAS 96 (229)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHH
Confidence 689999999999999999999988888888899999999 99999999999999 799999999999999999999
Q ss_pred hCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhcccc-CCCccHHHHH--HhcCcHHHHHhHhhCCcceeeecccccc
Q 043678 83 FGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVN-NEKNTALHEA--VSHGNVDLFKLKKTNNLILIFRDSDEKT 159 (303)
Q Consensus 83 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~l~~A--~~~~~~~~v~~L~~~~~~~~~~~~~~~~ 159 (303)
.|+.+++++|++.|++++ ..+ ..|.||||+| +..|+.+++++|++.|+++
T Consensus 97 ~g~~~~v~~Ll~~ga~~~------------------~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~--------- 149 (229)
T 2vge_A 97 CNDTVICMALVQHGAAIF------------------ATTLSDGATAFEKCDPYREGYADCATYLADVEQSM--------- 149 (229)
T ss_dssp TTCHHHHHHHHTTTCCTT------------------CCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT---------
T ss_pred cCCHHHHHHHHHcCCCcc------------------cccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc---------
Confidence 999999999999998854 554 6999999999 9999999999987777653
Q ss_pred hhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcC
Q 043678 160 NILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISEN 239 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g 239 (303)
+..+..|.||++.+ +... ..++|++.|
T Consensus 150 ----------------------------------~~~~~~~~~~l~~~----------------~~~~---~~~~ll~~g 176 (229)
T 2vge_A 150 ----------------------------------GLMNSGAVYALWDY----------------SAEF---GDELSFREG 176 (229)
T ss_dssp ----------------------------------TTSGGGEEEESSCB----------------CCSS---TTBCCBCTT
T ss_pred ----------------------------------ccccCCchHHHHHH----------------hhcc---ccccCcccc
Confidence 33344444443321 1111 225788889
Q ss_pred Ccc-cccccCCCChHHHHHHHhCCchhhHHHhh
Q 043678 240 PKC-YELVDNRGWNFLHYAMVSFHVGQLRNLLE 271 (303)
Q Consensus 240 ~~~-~~~~~~~g~tpl~~A~~~~~~~~~~~ll~ 271 (303)
+++ ++.+|..|+||||+|++.|+.++++..+-
T Consensus 177 a~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l 209 (229)
T 2vge_A 177 ESVTVLRRDGPEETDWWWAALHGQEGYVPRNYF 209 (229)
T ss_dssp CEEEEEESSCTTCSSEEEEEETTEEEEEEGGGE
T ss_pred ccccccccCCCcccHHHHHHHcCCcceeehhhh
Confidence 874 46788999999999999999988876443
No 68
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=1.8e-30 Score=191.11 Aligned_cols=158 Identities=18% Similarity=0.080 Sum_probs=141.4
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||.|+..|+.+++++|++.+.+....+..|.||||+| +..|+.+++++|++ .|.+++..+..|.||||+|+
T Consensus 4 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~ 77 (167)
T 3v31_A 4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWA--AAHGQIAVVEFLLQ----NGADPQLLGKGRESALSLAC 77 (167)
T ss_dssp CCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHH
T ss_pred cchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHH--HHCCCHHHHHHHHH----cCCCCCCcCCCCCcHHHHHH
Confidence 4899999999999999999999887777777899999999 99999999999999 79999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.|+++
T Consensus 78 ~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------- 128 (167)
T 3v31_A 78 SKGYTDIVKMLLDCGVDV------------------NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP----------- 128 (167)
T ss_dssp HHTCHHHHHHHHHHTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-----------
T ss_pred HcCCHHHHHHHHHCCCCC------------------CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------
Confidence 999999999999998875 488899999999999999999999988777652
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCc
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~ 241 (303)
+..+. .|.|||++|+..|+.+++++|++++.+
T Consensus 129 --------------------------------~~~~~----------------~g~t~l~~A~~~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 129 --------------------------------TIETD----------------SGYNSMDLAVALGYRSVQQVIESHLLK 160 (167)
T ss_dssp --------------------------------TCCCT----------------TSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --------------------------------CCcCC----------------CCCCHHHHHHHcCcHHHHHHHHHHHHH
Confidence 23333 455779999999999999999999876
Q ss_pred c
Q 043678 242 C 242 (303)
Q Consensus 242 ~ 242 (303)
.
T Consensus 161 ~ 161 (167)
T 3v31_A 161 L 161 (167)
T ss_dssp H
T ss_pred H
Confidence 4
No 69
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=4.6e-30 Score=186.01 Aligned_cols=150 Identities=21% Similarity=0.245 Sum_probs=92.1
Q ss_pred CchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhh
Q 043678 35 NTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFR 114 (303)
Q Consensus 35 ~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~ 114 (303)
.|+||.| +..|+.+++++|++ .|.+++ .+..|.||||+|+..|+.+++++|++.|+++
T Consensus 3 ~~~L~~A--~~~g~~~~v~~Ll~----~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--------------- 60 (153)
T 1awc_B 3 GKKLLEA--ARAGQDDEVRILMA----NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR--------------- 60 (153)
T ss_dssp HHHHHHH--HHHTCHHHHHHHHH----HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT---------------
T ss_pred cHHHHHH--HHcCCHHHHHHHHH----cCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---------------
Confidence 3566666 66666666666666 344333 3556666666666666666666666665543
Q ss_pred hhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhc
Q 043678 115 QMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIK 194 (303)
Q Consensus 115 ~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 194 (303)
+..+..|.||||+|+..|+.+++++|++.|++ ++
T Consensus 61 ---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------------------------------------------~~ 94 (153)
T 1awc_B 61 ---DARTKVDRTPLHMAASEGHANIVEVLLKHGAD-------------------------------------------VN 94 (153)
T ss_dssp ---TCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-------------------------------------------TT
T ss_pred ---CCCCCCCCCHHHHHHHcChHHHHHHHHHcCCC-------------------------------------------CC
Confidence 25556666666666666666666665555543 12
Q ss_pred hhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHH
Q 043678 195 ETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNL 269 (303)
Q Consensus 195 ~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~l 269 (303)
..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|
T Consensus 95 ~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 95 AKDM----------------LKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp CCCT----------------TSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCC----------------CCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 2222 234556777777777777777777776 366677777777777777776666554
No 70
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=3.5e-32 Score=211.81 Aligned_cols=206 Identities=17% Similarity=0.075 Sum_probs=140.5
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.|||+.|+..|+.+.++.|+++|.+...+.. |.||||+| +..|+.+++++|++ .|.+++.+|..|.||||+|+
T Consensus 6 ~t~L~~a~~~~~~~~~~~ll~~g~~~~~~~~-~~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~ 78 (239)
T 1ycs_B 6 QVSLPPGKRTNLRKTGSERIAHGMRVKFNPL-PLALLLDS--SLEGEFDLVQRIIY----EVDDPSLPNDEGITALHNAV 78 (239)
T ss_dssp --------------------------------CHHHHHHH--HHHTCHHHHHHHTS----TTSSCCCCCTTSCCHHHHHH
T ss_pred cccCchhhhhhhHHHHHHHhccCCCcccCch-hhHHHHHH--HHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHH
Confidence 5899999999999999999999998776644 89999999 99999999999998 78899999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|++.|++++..
T Consensus 79 ~~g~~~~v~~Ll~~ga~~------------------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-------- 132 (239)
T 1ycs_B 79 CAGHTEIVKFLVQFGVNV------------------NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM-------- 132 (239)
T ss_dssp HHTCHHHHHHHHHHTCCT------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--------
T ss_pred HcCCHHHHHHHHHcCCCC------------------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccee--------
Confidence 999999999999999875 488999999999999999999999988887763322
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHH--HhcCCHHHHHHHhhcC
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLA--AGKGDARTVERIISEN 239 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a--~~~~~~~~v~~Ll~~g 239 (303)
+.. .+.||||+| +..|+.+++++|+++|
T Consensus 133 -----------------------------------~~~---------------~~~t~l~~a~~~~~g~~~~~~~Ll~~~ 162 (239)
T 1ycs_B 133 -----------------------------------TYS---------------DMQTAADKCEEMEEGYTQCSQFLYGVQ 162 (239)
T ss_dssp -----------------------------------CSS---------------SCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred -----------------------------------cCC---------------CCcchHHHHHHhhhccHHHHHHHHHhh
Confidence 222 223778888 7789999999999999
Q ss_pred Ccccccc---------cCCCChHHHHHHHhCCchhhHHHhhcccchhcc------cccCCCCCCcHHHHHHhc
Q 043678 240 PKCYELV---------DNRGWNFLHYAMVSFHVGQLRNLLENNSLARSL------IDEGDAKGNTPLHVLAAV 297 (303)
Q Consensus 240 ~~~~~~~---------~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~------~~~~d~~g~tpL~~A~~~ 297 (303)
+++ +.. +..+.+|++++++.|.. +..+.+ .+.+ ....+..|++|..|....
T Consensus 163 a~~-~~~~~~~~~al~d~~~~~~~eLa~~~G~~--i~vl~~----~~~~~~~Ww~~~~~~~~G~~P~~yv~~~ 228 (239)
T 1ycs_B 163 EKM-GIMNKGVIYALWDYEPQNDDELPMKEGDC--MTIIHR----EDEDEIEWWWARLNDKEGYVPRNLLGLY 228 (239)
T ss_dssp HHT-TTTGGGEEEESSCBCCSSTTBCCBCSSCE--EEECCC----CTTSCSSEEEEEETTEEEEEEGGGEECC
T ss_pred hcc-cccccceEEEEeccCCCCCCcccccCCCE--EEEEEe----cCCCCCCEEEEEECCcEEEeehHHeeEC
Confidence 874 443 66789999998888862 222222 2221 234577888998876443
No 71
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=5.1e-30 Score=190.75 Aligned_cols=168 Identities=19% Similarity=0.190 Sum_probs=139.3
Q ss_pred cCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHH
Q 043678 33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEA 112 (303)
Q Consensus 33 ~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 112 (303)
.+.++||.| +..|+.+++++|++ ..+.+++..+..|.||||+|+..|+.+++++|++.|++++
T Consensus 4 ~~~~~l~~A--~~~g~~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------ 66 (179)
T 3f6q_A 4 EFMDDIFTQ--CREGNAVAVRLWLD---NTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN------------ 66 (179)
T ss_dssp ---CCHHHH--HHHTCHHHHHHHHH---CTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------
T ss_pred HHHHHHHHH--HHcCCHHHHHHHHh---cCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC------------
Confidence 378899999 99999999999988 2477889999999999999999999999999999987744
Q ss_pred hhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccch
Q 043678 113 FRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNL 192 (303)
Q Consensus 113 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 192 (303)
..+..|.||||+|+..|+.+++++|++.|++
T Consensus 67 ------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------------------------- 97 (179)
T 3f6q_A 67 ------VMNRGDDTPLHLAASHGHRDIVQKLLQYKAD------------------------------------------- 97 (179)
T ss_dssp ------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------------------------------------------
T ss_pred ------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------------------------------------------
Confidence 7888999999999999999999998877765
Q ss_pred hchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 193 IKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 193 ~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
++..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|.|||++|+..++.++++.|++
T Consensus 98 ~~~~d~----------------~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~L~~- 159 (179)
T 3f6q_A 98 INAVNE----------------HGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLRELLRERAEK- 159 (179)
T ss_dssp TTCCCT----------------TSCCHHHHHHHTTCHHHHHHHHHTTCC-SSBCCTTSCCGGGGSCHHHHHHHHHHHHH-
T ss_pred CCccCC----------------CCCCHHHHHHHcCCHHHHHHHHHCCCC-cchhccCCCCcHHHHHHHHHHHHHHHHHH-
Confidence 233333 345679999999999999999999999 58899999999999999999777777776
Q ss_pred ccchhcccccCCCCC
Q 043678 273 NSLARSLIDEGDAKG 287 (303)
Q Consensus 273 ~~~~~~~~~~~d~~g 287 (303)
.|++++..+..+
T Consensus 160 ---~g~~~~~~~~~~ 171 (179)
T 3f6q_A 160 ---MGQNLNRIPYKD 171 (179)
T ss_dssp ---TTCCCSCBCCCC
T ss_pred ---hhcCcccCCccc
Confidence 566677665544
No 72
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=2.7e-31 Score=218.19 Aligned_cols=249 Identities=12% Similarity=0.063 Sum_probs=161.8
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhh---hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchh---hhccccCCCcH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESL---LTAKAKNTILHINIISSERENVSTKFVEEILEKCPAL---LLQVNAKGDTP 76 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~---~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~---~~~~~~~g~tp 76 (303)
||||.|+..|+.++|++|+++|.... ..+..|.||||+| +..|+.+++++|++ .|++ .+..+.+ .||
T Consensus 94 T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~A--a~~G~~eiv~~Ll~----~gad~~~~~i~~~~-~Tp 166 (376)
T 2aja_A 94 VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA--AENGHLHVLNRLCE----LAPTEIMAMIQAEN-YHA 166 (376)
T ss_dssp HHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHH--HHTTCHHHHHHHHH----SCTTTHHHHHSHHH-HHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHH--HHcCCHHHHHHHHh----CCCCccccccCCCC-CCH
Confidence 89999999999999999999987221 1223477899999 99999999999998 6743 2222333 899
Q ss_pred HHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHH-hcCcHHHHHhHhhCCcceeeecc
Q 043678 77 LHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAV-SHGNVDLFKLKKTNNLILIFRDS 155 (303)
Q Consensus 77 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~-~~~~~~~v~~L~~~~~~~~~~~~ 155 (303)
||+|+..|+.++|++|+++|+++. .+..|..|.||||+|+ ..|+.++|++|++.|..
T Consensus 167 Lh~Aa~~G~~eiv~~Ll~~ga~~~----------------~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~------ 224 (376)
T 2aja_A 167 FRLAAENGHLHVLNRLCELAPTEA----------------TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM------ 224 (376)
T ss_dssp HHHHHHTTCHHHHHHHHHSCGGGH----------------HHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH------
T ss_pred HHHHHHCCCHHHHHHHHHcCCccc----------------hhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc------
Confidence 999999999999999999998854 1125677999999999 99999999999987643
Q ss_pred cccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccC--------CcccHHhHHHh--
Q 043678 156 DEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKD--------RKMTALHLAAG-- 225 (303)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~--------~~~t~L~~a~~-- 225 (303)
+.++++.+..... .+++++|++.+.. ++..+. +++.++.....+ .+...+...+.
T Consensus 225 -~~taL~~Aa~~g~---------~evv~lL~~~ga~-~~~~~~----~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~ 289 (376)
T 2aja_A 225 -LAYAEIHEFEYGE---------KYVNPFIARHVNR-LKEMHD----AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN 289 (376)
T ss_dssp -HHHHHHCTTTTTT---------TTHHHHHHHHHHH-HHHHHT----TTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHC
T ss_pred -cchHHHHHHHCCC---------HHHHHHHHhcCcc-cccccH----HHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcc
Confidence 5566665543332 5788888888776 443332 333333211110 00011111122
Q ss_pred -cCCHHHHHHHhhcCCcc----cccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCC
Q 043678 226 -KGDARTVERIISENPKC----YELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPK 300 (303)
Q Consensus 226 -~~~~~~v~~Ll~~g~~~----~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~ 300 (303)
.+..+.+++|++.+... .......+.||||+|++.|+.++++.|++. ...++..|.||+.+|...|..
T Consensus 290 ~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~-------~~v~~~~~~~~~~~~~~~~~~ 362 (376)
T 2aja_A 290 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI-------PSVLALTKANNYYINETGGRL 362 (376)
T ss_dssp CGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS-------HHHHHSCC-------------
T ss_pred hhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcC-------hHHHHHHHHhccccccccccc
Confidence 23466788888744210 011224567999999999999999999985 355688899999999999988
Q ss_pred CC
Q 043678 301 EF 302 (303)
Q Consensus 301 ~i 302 (303)
|+
T Consensus 363 ~~ 364 (376)
T 2aja_A 363 DL 364 (376)
T ss_dssp --
T ss_pred cH
Confidence 75
No 73
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=7.1e-30 Score=185.02 Aligned_cols=150 Identities=21% Similarity=0.214 Sum_probs=133.1
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.++|+.|+..|+.+++++|+++|.+.. .+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~ 75 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLA--AQYGHFSTTEVLLR----AGVSRDARTKVDRTPLHMAA 75 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHH--HHHTCHHHHHHHHT----TTCCTTCCCTTCCCHHHHHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHH
Confidence 589999999999999999999988654 466699999999 99999999999998 79999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.|+++
T Consensus 76 ~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~----------- 126 (153)
T 1awc_B 76 SEGHANIVEVLLKHGADV------------------NAKDMLKMTALHWATEHNHQEVVELLIKYGADV----------- 126 (153)
T ss_dssp HHTCHHHHHHHHTTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-----------
T ss_pred HcChHHHHHHHHHcCCCC------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-----------
Confidence 999999999999998875 488899999999999999999999988877752
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHH
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERI 235 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~L 235 (303)
+..+. .|.|||++|+..|+.+++++|
T Consensus 127 --------------------------------~~~~~----------------~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 127 --------------------------------HTQSK----------------FCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp --------------------------------TCCCT----------------TSCCHHHHHHHTTCHHHHHHH
T ss_pred --------------------------------cccCC----------------CCCCHHHHHHHcCCHHHHHHh
Confidence 33333 345779999999999999987
No 74
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=2e-29 Score=183.30 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=130.7
Q ss_pred CCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHh
Q 043678 34 KNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAF 113 (303)
Q Consensus 34 g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 113 (303)
+.||||+| +..|+.+++++|++. .+.+++..+..|.||||+ +..|+.+++++|++.|++++
T Consensus 2 ~~~~L~~A--~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~------------- 62 (156)
T 1bd8_A 2 AGDRLSGA--AARGDVQEVRRLLHR---ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPN------------- 62 (156)
T ss_dssp HHHHHHHH--HHHTCHHHHHHHHHT---TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-------------
T ss_pred cchHHHHH--HHhCCHHHHHHHHHh---hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-------------
Confidence 45899999 999999999999882 355888899999999999 89999999999999987744
Q ss_pred hhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchh
Q 043678 114 RQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLI 193 (303)
Q Consensus 114 ~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 193 (303)
.+|..|.||||+|+..|+.+++++|++.|+++
T Consensus 63 -----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------------------------------------- 94 (156)
T 1bd8_A 63 -----VQDTSGTSPVHDAARTGFLDTLKVLVEHGADV------------------------------------------- 94 (156)
T ss_dssp -----CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-------------------------------------------
T ss_pred -----CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-------------------------------------------
Confidence 78889999999999999999999887777652
Q ss_pred chhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 194 KETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 194 ~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
+..+. .|.||||+|+..|+.+++++|+++ ++ ++.+|..|.||||+|+..|+.+++++|++.
T Consensus 95 ~~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 95 NVPDG----------------TGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp CCCCT----------------TSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred CCcCC----------------CCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 22333 345669999999999999999998 77 588999999999999999999999998875
No 75
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=1.2e-29 Score=188.83 Aligned_cols=164 Identities=21% Similarity=0.189 Sum_probs=141.1
Q ss_pred ChhHHHHHhcCCChhHHHHHHH-HHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARD-VIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A 80 (303)
.++|+.|+..|+.+++++|++. +.+....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|
T Consensus 6 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 79 (179)
T 3f6q_A 6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWA--CREGRSAVVEMLIM----RGARINVMNRGDDTPLHLA 79 (179)
T ss_dssp -CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHH--HHcCcHHHHHHHHH----cCCCCCCcCCCCCCHHHHH
Confidence 4789999999999999999998 444556777799999999 99999999999999 7999999999999999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
+..|+.+++++|+++|+++ +..|..|.||||+|+..++.+++++|++.|+++
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~------------------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~---------- 131 (179)
T 3f6q_A 80 ASHGHRDIVQKLLQYKADI------------------NAVNEHGNVPLHYACFWGQDQVAEDLVANGALV---------- 131 (179)
T ss_dssp HHTTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS----------
T ss_pred HHcCCHHHHHHHHHcCCCC------------------CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc----------
Confidence 9999999999999999874 488999999999999999999999988887763
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCC
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENP 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~ 240 (303)
+..+..|. |||++|+..++.+++++|++.|+
T Consensus 132 ---------------------------------~~~~~~g~----------------tpl~~A~~~~~~~~~~~L~~~g~ 162 (179)
T 3f6q_A 132 ---------------------------------SICNKYGE----------------MPVDKAKAPLRELLRERAEKMGQ 162 (179)
T ss_dssp ---------------------------------SBCCTTSC----------------CGGGGSCHHHHHHHHHHHHHTTC
T ss_pred ---------------------------------chhccCCC----------------CcHHHHHHHHHHHHHHHHHHhhc
Confidence 33344444 55888888888999999999999
Q ss_pred cccccccCC
Q 043678 241 KCYELVDNR 249 (303)
Q Consensus 241 ~~~~~~~~~ 249 (303)
++ +..+..
T Consensus 163 ~~-~~~~~~ 170 (179)
T 3f6q_A 163 NL-NRIPYK 170 (179)
T ss_dssp CC-SCBCCC
T ss_pred Cc-ccCCcc
Confidence 85 544443
No 76
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=3.7e-30 Score=200.34 Aligned_cols=178 Identities=15% Similarity=0.037 Sum_probs=122.6
Q ss_pred cCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHH
Q 043678 33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEA 112 (303)
Q Consensus 33 ~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 112 (303)
.|.||||.| +..++.+.++.|++ .|.+++.. ..|.||||+|+..|+.+++++|++.|++
T Consensus 4 ~g~t~L~~a--~~~~~~~~~~~ll~----~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-------------- 62 (239)
T 1ycs_B 4 TGQVSLPPG--KRTNLRKTGSERIA----HGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDD-------------- 62 (239)
T ss_dssp ----------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS--------------
T ss_pred cccccCchh--hhhhhHHHHHHHhc----cCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCC--------------
Confidence 499999999 99999999999999 78888754 6789999999999999999999999886
Q ss_pred hhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccch
Q 043678 113 FRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNL 192 (303)
Q Consensus 113 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 192 (303)
++..|..|.||||+|+..|+.+++++|++.|++
T Consensus 63 ----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------------------------------------------- 95 (239)
T 1ycs_B 63 ----PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN------------------------------------------- 95 (239)
T ss_dssp ----CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-------------------------------------------
T ss_pred ----CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------------------------------------------
Confidence 458899999999999999999999998777665
Q ss_pred hchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCC-hHHHHH--HHhCCchhhHHH
Q 043678 193 IKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGW-NFLHYA--MVSFHVGQLRNL 269 (303)
Q Consensus 193 ~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~-tpl~~A--~~~~~~~~~~~l 269 (303)
++..|.. |.||||+|+..|+.+++++|+++|+++ +..+..|. ||||+| +..|+.+++++|
T Consensus 96 ~~~~d~~----------------g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~~~L 158 (239)
T 1ycs_B 96 VNAADSD----------------GWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFL 158 (239)
T ss_dssp TTCCCTT----------------CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred CCccCCC----------------CCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhccHHHHHHH
Confidence 3334443 456699999999999999999999995 77887776 999999 888999999999
Q ss_pred hhcccchhcccccC---------CCCCCcHHHHHHhcCC
Q 043678 270 LENNSLARSLIDEG---------DAKGNTPLHVLAAVRP 299 (303)
Q Consensus 270 l~~~~~~~~~~~~~---------d~~g~tpL~~A~~~~~ 299 (303)
++. |++++.. +..|.+|++++.+.|.
T Consensus 159 l~~----~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 159 YGV----QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHH----HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHh----hhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 985 4444443 7778999988877664
No 77
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=5.6e-30 Score=188.05 Aligned_cols=158 Identities=18% Similarity=0.197 Sum_probs=123.7
Q ss_pred cccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHH
Q 043678 31 AKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRI 110 (303)
Q Consensus 31 ~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~ 110 (303)
+..|.|+||.| +..|+.+++++|++. .+.+.+..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 5 ~~~~~~~l~~A--~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------- 68 (165)
T 3twr_A 5 NSEADRQLLEA--AKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV----------- 68 (165)
T ss_dssp -CHHHHHHHHH--HHHTCHHHHHHHCCT---TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-----------
T ss_pred cchhhHHHHHH--HHhCCHHHHHHHHHc---CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-----------
Confidence 44477888888 888888888888762 55667777778888888888888888888888888764
Q ss_pred HHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhcc
Q 043678 111 EAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKK 190 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 190 (303)
+.+|..|.||||+|+..++.+++++|++.|++
T Consensus 69 -------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------------------------------------- 100 (165)
T 3twr_A 69 -------HAKDKGGLVPLHNACSYGHYEVAELLVKHGAV----------------------------------------- 100 (165)
T ss_dssp -------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----------------------------------------
T ss_pred -------CccCCCCCCHHHHHHHcCcHHHHHHHHhCCCC-----------------------------------------
Confidence 37778888888888888888888887776664
Q ss_pred chhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHh
Q 043678 191 NLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLL 270 (303)
Q Consensus 191 ~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll 270 (303)
++..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+. ++.+++++|+
T Consensus 101 --~~~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~a~~-~~~~i~~~L~ 160 (165)
T 3twr_A 101 --VNVADL----------------WKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKD-GDTDIQDLLR 160 (165)
T ss_dssp --TTCCCT----------------TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred --CCCcCC----------------CCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCChhHhHhc-CChHHHHHHh
Confidence 222333 344668888888888999999988888 47888889999988766 7778877777
Q ss_pred hc
Q 043678 271 EN 272 (303)
Q Consensus 271 ~~ 272 (303)
+.
T Consensus 161 ~~ 162 (165)
T 3twr_A 161 GD 162 (165)
T ss_dssp TC
T ss_pred hc
Confidence 64
No 78
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=1.4e-29 Score=185.94 Aligned_cols=155 Identities=22% Similarity=0.331 Sum_probs=132.4
Q ss_pred ChhHHHHHhcCCChhHHHHHHH-HHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARD-VIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A 80 (303)
++||+.|+..|+.++++.|++. +.+....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|
T Consensus 9 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 82 (165)
T 3twr_A 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFA--AGYNRVSVVEYLLQ----HGADVHAKDKGGLVPLHNA 82 (165)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHH
T ss_pred hHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHH--HHcChHHHHHHHHh----cCCCCCccCCCCCCHHHHH
Confidence 4799999999999999999986 444445566689999999 99999999999999 7999999999999999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|++.|++
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~~------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----------- 133 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAVVN------------------VADLWKFTPLHEAAAKGKYEICKLLLQHGAD----------- 133 (165)
T ss_dssp HHTTCHHHHHHHHHTTCCTT------------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----------
T ss_pred HHcCcHHHHHHHHhCCCCCC------------------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----------
Confidence 99999999999999988754 8889999999999999999999998887775
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCC
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENP 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~ 240 (303)
++..+..|. |||++|+. ++.+++++|+++|+
T Consensus 134 --------------------------------~~~~~~~g~----------------t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 134 --------------------------------PTKKNRDGN----------------TPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp --------------------------------TTCCCTTSC----------------CTGGGSCT-TCHHHHHHHHTC--
T ss_pred --------------------------------CcccCCCCC----------------ChhHhHhc-CChHHHHHHhhccc
Confidence 334444444 44777655 88899999999875
No 79
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.95 E-value=3.5e-29 Score=186.43 Aligned_cols=159 Identities=13% Similarity=0.072 Sum_probs=103.0
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccch----hhHHHHHHHHHhCchhhhccccCCCcHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSEREN----VSTKFVEEILEKCPALLLQVNAKGDTPLH 78 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~----~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~ 78 (303)
++|+.|++.|+.+.++.+++.+++. ..+..|.||||+| +..|+. +++++|++ .|++++.++..|+||||
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~~~~-~~~~~g~T~Lh~A--~~~~~~~~~~~iv~~Ll~----~Gadvn~~d~~g~TpLh 80 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKGYED-KESVLKSNILYDV--LRNNNDEARYKISMFLIN----KGADIKSRTKEGTTLFF 80 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHSSSC-HHHHHTTTHHHHH--TTCSCHHHHHHHHHHHHH----TTCCSSCCCTTCCCTHH
T ss_pred cHHHHHHHcCCHHHHHHHHhcCccc-ccccCCCCHHHHH--HHcCCcchHHHHHHHHHH----CCCCCCCCCCCCCcHHH
Confidence 4566666666666666666655432 2223466666666 665543 35666665 56666666666666666
Q ss_pred HHHHhCC------HHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCc-cHHHHHHhcCcHHHHHhHhhCCccee
Q 043678 79 LAAKFGH------FDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKN-TALHEAVSHGNVDLFKLKKTNNLILI 151 (303)
Q Consensus 79 ~A~~~~~------~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-t~l~~A~~~~~~~~v~~L~~~~~~~~ 151 (303)
+|+..++ .+++++|+++|+++ +.+|..|. ||||+|+..+..+
T Consensus 81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadi------------------n~~d~~g~ttpLh~A~~~~~~~------------- 129 (186)
T 3t8k_A 81 PLFQGGGNDITGTTELCKIFLEKGADI------------------TALYKPYKIVVFKNIFNYFVDE------------- 129 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCS------------------SSCBGGGTBCTTGGGGGCCSCH-------------
T ss_pred HHHHcCCcchhhHHHHHHHHHHCCCCC------------------CccCCCcCchHHHHHHHcCCCh-------------
Confidence 6666654 35566666666553 35555565 6666655432210
Q ss_pred eecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHH
Q 043678 152 FRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDART 231 (303)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~ 231 (303)
.+..++
T Consensus 130 --------------------------------------------------------------------------~~~~~i 135 (186)
T 3t8k_A 130 --------------------------------------------------------------------------NEMIPL 135 (186)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred --------------------------------------------------------------------------hhHHHH
Confidence 123567
Q ss_pred HHHHhh-cCCcccccccCCCChHHHHHHHhCCchhhHHHhhccc
Q 043678 232 VERIIS-ENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNS 274 (303)
Q Consensus 232 v~~Ll~-~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~ 274 (303)
+++|++ +|++ ++.+|..|+||||+|++.++.++++.|.+...
T Consensus 136 v~~Ll~~~gad-~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~ 178 (186)
T 3t8k_A 136 YKLIFSQSGLQ-LLIKDKWGLTALEFVKRCQKPIALKMMEDYIK 178 (186)
T ss_dssp HHHHHTSTTCC-TTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence 899999 8999 58999999999999999999998888888643
No 80
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=2.2e-28 Score=177.80 Aligned_cols=147 Identities=22% Similarity=0.228 Sum_probs=127.0
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceee
Q 043678 73 GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIF 152 (303)
Q Consensus 73 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~ 152 (303)
|.||||+|+..|+.+++++|++. ...+ ++..+..|.||||+ +..|+.+++++|++.|+++
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~----------------~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-- 61 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHR-ELVH----------------PDALNRFGKTALQV-MMFGSTAIALELLKQGASP-- 61 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT-TCCC----------------TTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT--
T ss_pred cchHHHHHHHhCCHHHHHHHHHh-hCcC----------------ccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC--
Confidence 56999999999999999999998 3111 55788999999999 9999999999988777652
Q ss_pred ecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHH
Q 043678 153 RDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTV 232 (303)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v 232 (303)
+..+. .|.||||+|+..|+.+++
T Consensus 62 -----------------------------------------~~~~~----------------~g~t~L~~A~~~~~~~~v 84 (156)
T 1bd8_A 62 -----------------------------------------NVQDT----------------SGTSPVHDAARTGFLDTL 84 (156)
T ss_dssp -----------------------------------------TCCCT----------------TSCCHHHHHHHTTCHHHH
T ss_pred -----------------------------------------CCcCC----------------CCCCHHHHHHHcCcHHHH
Confidence 33333 345779999999999999
Q ss_pred HHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 233 ERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 233 ~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
++|+++|++ ++.+|..|+||||+|+..|+.+++++|++. ++++.+|..|.||||+|++.|+.++
T Consensus 85 ~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----~~~~~~~~~g~t~l~~A~~~~~~~~ 148 (156)
T 1bd8_A 85 KVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-----SDLHRRDARGLTPLELALQRGAQDL 148 (156)
T ss_dssp HHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-----SCTTCCCTTSCCHHHHHHHSCCHHH
T ss_pred HHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-----cCCCCcCCCCCCHHHHHHHcCcHHH
Confidence 999999999 588999999999999999999999998885 6789999999999999999998764
No 81
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=1.5e-29 Score=207.87 Aligned_cols=197 Identities=13% Similarity=0.054 Sum_probs=147.5
Q ss_pred hHHHHHh-cCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchh---hhccccCCCcHHHH
Q 043678 4 NFFKAAS-AGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPAL---LLQVNAKGDTPLHL 79 (303)
Q Consensus 4 ~L~~A~~-~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~---~~~~~~~g~tpL~~ 79 (303)
.++.|.. .++.+.+++++++|.+ +.||||+| +..|+.+++++|++ .|.. .+..+..|.||||+
T Consensus 68 ~~~~a~~~~~~~~~~~~l~~~g~~-------~~T~Lh~A--a~~G~~e~v~~Ll~----~ga~~~~~~~~~~~~~tpL~~ 134 (376)
T 2aja_A 68 CLYYAHYNRNAKQLWSDAHKKGIK-------SEVICFVA--AITGCSSALDTLCL----LLTSDEIVKVIQAENYQAFRL 134 (376)
T ss_dssp HHHHHHTTTTCTTHHHHHHHHTCC-------HHHHHHHH--HHHCCHHHHHHHTT----C--CCSSCC--CHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHcCCC-------cCCHHHHH--HHcCCHHHHHHHHH----cCCcHHHHHHhccCCCCHHHH
Confidence 4555555 5788888888887654 45999999 99999999999998 5552 22345567899999
Q ss_pred HHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccc
Q 043678 80 AAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKT 159 (303)
Q Consensus 80 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~ 159 (303)
|+..|+.++|++|+++|++... ..++..+ .||||+|+..|+.++|++|++.|+++..
T Consensus 135 Aa~~G~~eiv~~Ll~~gad~~~-------------~~i~~~~---~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~------- 191 (376)
T 2aja_A 135 AAENGHLHVLNRLCELAPTEIM-------------AMIQAEN---YHAFRLAAENGHLHVLNRLCELAPTEAT------- 191 (376)
T ss_dssp HHHTTCHHHHHHHHHSCTTTHH-------------HHHSHHH---HHHHHHHHHTTCHHHHHHHHHSCGGGHH-------
T ss_pred HHHcCCHHHHHHHHhCCCCccc-------------cccCCCC---CCHHHHHHHCCCHHHHHHHHHcCCccch-------
Confidence 9999999999999999964210 0012222 8999999999999999998888775211
Q ss_pred hhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHH-hcCCHHHHHHHhhc
Q 043678 160 NILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAA-GKGDARTVERIISE 238 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~-~~~~~~~v~~Ll~~ 238 (303)
+..+. .|.||||+|+ ..|+.+++++|++.
T Consensus 192 ----------------------------------~~~d~----------------~g~TpL~~Aa~~~G~~eiv~~Ll~~ 221 (376)
T 2aja_A 192 ----------------------------------AMIQA----------------ENYYAFRWAAVGRGHHNVINFLLDC 221 (376)
T ss_dssp ----------------------------------HHHHH----------------HHHHHHHHHHSTTCCHHHHHHHTTS
T ss_pred ----------------------------------hccCC----------------CCCCHHHHHHHHCCCHHHHHHHHhC
Confidence 00222 3457799999 99999999999997
Q ss_pred CCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 239 NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 239 g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
|++ |.||||+|+..|+.+++++|++. |++++.+| ++++.|+..|+.++
T Consensus 222 ga~--------~~taL~~Aa~~g~~evv~lL~~~----ga~~~~~~----~~l~~A~~~g~~~v 269 (376)
T 2aja_A 222 PVM--------LAYAEIHEFEYGEKYVNPFIARH----VNRLKEMH----DAFKLSNPDGVFDL 269 (376)
T ss_dssp HHH--------HHHHHHCTTTTTTTTHHHHHHHH----HHHHHHHH----TTTTTTSSSSCCCC
T ss_pred CCc--------cchHHHHHHHCCCHHHHHHHHhc----Cccccccc----HHHHHHHHCCChhh
Confidence 632 78999999999999999998885 55565544 47888888888774
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=9.3e-28 Score=174.35 Aligned_cols=145 Identities=17% Similarity=0.059 Sum_probs=104.9
Q ss_pred hccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhC
Q 043678 67 LQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTN 146 (303)
Q Consensus 67 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~ 146 (303)
+..+..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+ .|+.+++++|++.
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~ 66 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANP------------------NAPNSYGRRPIQVMM-MGSARVAELLLLH 66 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT------------------TCCCSSSCCTTTSSC-TTCHHHHHHHHTT
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC------------------CCCCCCCCCHHHHHH-cCCHHHHHHHHHc
Confidence 446778899999999999999999999988774 478889999999985 8899999988877
Q ss_pred CcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCccc-HHhHHHh
Q 043678 147 NLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMT-ALHLAAG 225 (303)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t-~L~~a~~ 225 (303)
|++++ ..+. .|.| |||+|+.
T Consensus 67 g~~~~-------------------------------------------~~d~----------------~g~ttpL~~A~~ 87 (156)
T 1bi7_B 67 GAEPN-------------------------------------------CADP----------------ATLTRPVHDAAR 87 (156)
T ss_dssp TCCCC-------------------------------------------CCCT----------------TTCCCHHHHHHH
T ss_pred CCCCC-------------------------------------------CcCC----------------CCCcHHHHHHHH
Confidence 76533 2333 3345 7999999
Q ss_pred cCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHH
Q 043678 226 KGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVL 294 (303)
Q Consensus 226 ~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A 294 (303)
.|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++ .|++++.+|..|.||.+-+
T Consensus 88 ~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 88 EGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA----AAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS----CC-----------------
T ss_pred CCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHH----cCCCCCccCcCcCcccccC
Confidence 9999999999999999 58899999999999999999888888777 5888999999999998744
No 83
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=2e-27 Score=172.62 Aligned_cols=136 Identities=13% Similarity=-0.004 Sum_probs=114.5
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCc-HHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDT-PLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t-pL~~A 80 (303)
.||||.|+..|+.+++++|+++|++....+..|.||||+| + .|+.+++++|++ .|.+++.++..|.| |||+|
T Consensus 13 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~-~~~~~~v~~Ll~----~g~~~~~~d~~g~ttpL~~A 85 (156)
T 1bi7_B 13 ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM--M-MGSARVAELLLL----HGAEPNCADPATLTRPVHDA 85 (156)
T ss_dssp TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSS--C-TTCHHHHHHHHT----TTCCCCCCCTTTCCCHHHHH
T ss_pred hHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--H-cCCHHHHHHHHH----cCCCCCCcCCCCCcHHHHHH
Confidence 5899999999999999999999988877888899999999 7 899999999998 79999999999999 99999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.|+++...+..|.++
T Consensus 86 ~~~~~~~~v~~Ll~~ga~~------------------~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 147 (156)
T 1bi7_B 86 AREGFLDTLVVLHRAGARL------------------DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDA 147 (156)
T ss_dssp HHHTCHHHHHHHHHHTCCS------------------SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------------
T ss_pred HHCCCHHHHHHHHHcCCCC------------------cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcc
Confidence 9999999999999999874 4889999999999999999999999999999999999888875
Q ss_pred hh
Q 043678 161 IL 162 (303)
Q Consensus 161 ~~ 162 (303)
..
T Consensus 148 ~~ 149 (156)
T 1bi7_B 148 AE 149 (156)
T ss_dssp --
T ss_pred cc
Confidence 54
No 84
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=2.2e-27 Score=168.28 Aligned_cols=123 Identities=14% Similarity=0.088 Sum_probs=115.0
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccC-CCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAK-GDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~-g~tpL~~A 80 (303)
.||||.|+..|+.+++++|+++|++....+..|.||||+| +. |+.+++++|++ .|.+++.++.. |.||||+|
T Consensus 13 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~-~~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A 85 (136)
T 1d9s_A 13 DAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM--MM-GSAQVAELLLL----HGAEPNCADPATLTRPVHDA 85 (136)
T ss_dssp SCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTS--TT-SCHHHHHHHHH----HTCCSSCCBTTTTBCHHHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHH--Hc-CCHHHHHHHHH----CCCCCCCcCCCCCCCHHHHH
Confidence 5899999999999999999999988877888899999999 88 99999999999 68999999999 99999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcc
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLI 149 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~ 149 (303)
+..|+.+++++|+++|+++ +.+|..|.||||+|+..++.+++++|++.|++
T Consensus 86 ~~~~~~~~v~~Ll~~ga~~------------------~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 86 AREGFLDTLVVLHRAGARL------------------DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHTCHHHHHHHHHTCCCC------------------CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHcCCHHHHHHHHHcCCCC------------------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999874 48899999999999999999999999988764
No 85
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=5.4e-27 Score=166.29 Aligned_cols=132 Identities=18% Similarity=0.137 Sum_probs=111.7
Q ss_pred chhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHh
Q 043678 63 PALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKL 142 (303)
Q Consensus 63 ~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~ 142 (303)
+.+++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+. ++.+++++
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~-~~~~~v~~ 62 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP------------------NALNRFGRRPIQVMMM-GSAQVAEL 62 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT------------------TCCCTTCCTTTTTSTT-SCHHHHHH
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc------------------CCcCCCCCCHHHHHHc-CCHHHHHH
Confidence 4567888899999999999999999999999998774 4788899999999999 99999888
Q ss_pred HhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhH
Q 043678 143 KKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHL 222 (303)
Q Consensus 143 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~ 222 (303)
|++.|+++ +..+.. .|.||||+
T Consensus 63 Ll~~g~~~-------------------------------------------~~~~~~---------------~g~t~L~~ 84 (136)
T 1d9s_A 63 LLLHGAEP-------------------------------------------NCADPA---------------TLTRPVHD 84 (136)
T ss_dssp HHHHTCCS-------------------------------------------SCCBTT---------------TTBCHHHH
T ss_pred HHHCCCCC-------------------------------------------CCcCCC---------------CCCCHHHH
Confidence 77776653 222222 15577999
Q ss_pred HHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 223 AAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 223 a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++.
T Consensus 85 A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ 133 (136)
T 1d9s_A 85 AAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133 (136)
T ss_dssp HHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 9999999999999999999 588999999999999999999999888885
No 86
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.94 E-value=8.9e-27 Score=165.14 Aligned_cols=122 Identities=24% Similarity=0.270 Sum_probs=113.8
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||.|+..|+.+++++|+++|++....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+
T Consensus 15 ~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 15 GKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLA--TAHGHLEIVEVLLK----NGADVNAVDAIGFTPLHLAA 88 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHH
T ss_pred cHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCcCCCCCCCHHHHHH
Confidence 4799999999999999999999988777788899999999 99999999999999 79999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCC
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNN 147 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~ 147 (303)
..|+.+++++|+++|++++ ..|..|.||||+|+..++.+++++|++.|
T Consensus 89 ~~~~~~~v~~Ll~~g~~~~------------------~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 89 FIGHLEIAEVLLKHGADVN------------------AQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHcCCCCc------------------CcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 9999999999999988744 88899999999999999999999998765
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.93 E-value=5.3e-26 Score=159.02 Aligned_cols=124 Identities=26% Similarity=0.316 Sum_probs=115.9
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.|||+.|+..|+.+++++|++++++....+..|.||||+| +..++.+++++|++ .|.+++.++..|.||||+|+
T Consensus 3 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A--~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~l~~A~ 76 (126)
T 1n0r_A 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA--ARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAA 76 (126)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred ccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHH--HHcCcHHHHHHHHH----cCCCCcccCCCCCcHHHHHH
Confidence 5899999999999999999999887777777799999999 99999999999999 79999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcc
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLI 149 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~ 149 (303)
..|+.+++++|+++|++++ .+|..|.|||++|+..++.+++++|++.|++
T Consensus 77 ~~~~~~~~~~Ll~~g~~~~------------------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 77 RNGHLEVVKLLLEAGADVN------------------AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HTTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HcChHHHHHHHHHcCCCCc------------------ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 9999999999999988744 7889999999999999999999999988864
No 88
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=2.8e-26 Score=170.74 Aligned_cols=149 Identities=13% Similarity=0.035 Sum_probs=116.5
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhcccc-CCCccHHHHHHhcCcHH----HHHhHhhCC
Q 043678 73 GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVN-NEKNTALHEAVSHGNVD----LFKLKKTNN 147 (303)
Q Consensus 73 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~l~~A~~~~~~~----~v~~L~~~~ 147 (303)
++++|+.|+..|+.+.++.+++.+.+ ..+ ..|+||||+|+.+++.+ ++++|++.|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~--------------------~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~G 65 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYE--------------------DKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSS--------------------CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcc--------------------cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCC
Confidence 56899999999999999999887633 334 67999999999999753 666666666
Q ss_pred cceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcC
Q 043678 148 LILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKG 227 (303)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~ 227 (303)
++ ++..+..|. ||||+|+..+
T Consensus 66 ad-------------------------------------------vn~~d~~g~----------------TpLh~a~~~~ 86 (186)
T 3t8k_A 66 AD-------------------------------------------IKSRTKEGT----------------TLFFPLFQGG 86 (186)
T ss_dssp CC-------------------------------------------SSCCCTTCC----------------CTHHHHHHHC
T ss_pred CC-------------------------------------------CCCCCCCCC----------------cHHHHHHHcC
Confidence 54 455555555 4488888887
Q ss_pred C------HHHHHHHhhcCCcccccccCCCC-hHHHHHHHhCCch-hhHHHhhcccc-hhcccccCCCCCCcHHHHHHhcC
Q 043678 228 D------ARTVERIISENPKCYELVDNRGW-NFLHYAMVSFHVG-QLRNLLENNSL-ARSLIDEGDAKGNTPLHVLAAVR 298 (303)
Q Consensus 228 ~------~~~v~~Ll~~g~~~~~~~~~~g~-tpl~~A~~~~~~~-~~~~ll~~~~~-~~~~~~~~d~~g~tpL~~A~~~~ 298 (303)
+ .+++++|+++|++ ++.+|..|+ ||||+|+..+..+ ....+++.++. .|++++.+|..|+||||+|++.+
T Consensus 87 ~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~ 165 (186)
T 3t8k_A 87 GNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ 165 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTT
T ss_pred CcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcC
Confidence 6 6889999999999 599999999 9999999955432 11233444444 78999999999999999999998
Q ss_pred CCC
Q 043678 299 PKE 301 (303)
Q Consensus 299 ~~~ 301 (303)
+.+
T Consensus 166 ~~~ 168 (186)
T 3t8k_A 166 KPI 168 (186)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=3.4e-25 Score=156.93 Aligned_cols=126 Identities=21% Similarity=0.178 Sum_probs=108.2
Q ss_pred cccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCc
Q 043678 69 VNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNL 148 (303)
Q Consensus 69 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~ 148 (303)
....|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..++.+++++|++.|+
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 71 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADV------------------NAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCC------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 4556889999999999999999999998774 4788999999999999999999999887776
Q ss_pred ceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCC
Q 043678 149 ILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGD 228 (303)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~ 228 (303)
+ ++..+. .|.||||+|+..|+
T Consensus 72 ~-------------------------------------------~~~~d~----------------~g~t~L~~A~~~~~ 92 (136)
T 2jab_A 72 D-------------------------------------------VNAVDA----------------IGFTPLHLAAFIGH 92 (136)
T ss_dssp C-------------------------------------------TTCCCT----------------TCCCHHHHHHHHTC
T ss_pred C-------------------------------------------CCcCCC----------------CCCCHHHHHHHcCC
Confidence 5 233333 34567999999999
Q ss_pred HHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 229 ARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 229 ~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++.
T Consensus 93 ~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 93 LEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 9999999999999 588999999999999999999999998875
No 90
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.92 E-value=4.4e-27 Score=183.36 Aligned_cols=166 Identities=15% Similarity=0.131 Sum_probs=127.6
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhC
Q 043678 5 FFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFG 84 (303)
Q Consensus 5 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~ 84 (303)
++.++..|+.+.++.+...+.+ .. ..|.||||+| +..|+.+++++|++ +.+++.++..|.||||+|+..|
T Consensus 19 ~l~~~~~g~~~~~~~~~~~~~~--~~-~~g~t~L~~A--~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~~A~~~g 88 (244)
T 3ui2_A 19 YLIEWKDGHSPSWVPSSYIAAD--VV-SEYETPWWTA--ARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLG 88 (244)
T ss_dssp EEEEESSCCCCEEEEGGGSCHH--HH-HHHHHHHHHH--HTTTCHHHHHHTTT-----TCCTTCBCTTSCBHHHHHHHHT
T ss_pred HHHHHHcCCCcccccccccccc--cc-cCCCCHHHHH--HHcCCHHHHHHHHc-----CCCCCCcCCCCCCHHHHHHHCC
Confidence 3344455666555554444332 22 3388999999 99999999999986 6788999999999999999999
Q ss_pred CHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhcccc-CCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhh
Q 043678 85 HFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVN-NEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILF 163 (303)
Q Consensus 85 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~ 163 (303)
+.+++++|+++|++++ .++ ..|.||||+|+..|+.+++++|++.|+++
T Consensus 89 ~~~~v~~Ll~~ga~~~------------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~------------- 137 (244)
T 3ui2_A 89 SDKCVRLLAEAGADLD------------------HRDMRGGLTALHMAAGYVRPEVVEALVELGADI------------- 137 (244)
T ss_dssp CHHHHHHHHHTTCCTT------------------CCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCT-------------
T ss_pred CHHHHHHHHHcCCCCC------------------cCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-------------
Confidence 9999999999998754 666 78999999999999999999988887764
Q ss_pred hhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCc
Q 043678 164 KFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK 241 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~ 241 (303)
+..+..|.||+|+++.......+.+||++|+..|+.+++++|++++.+
T Consensus 138 ------------------------------~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 138 ------------------------------EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp ------------------------------TCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred ------------------------------CCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence 444555555555555444445677888888888888888888886543
No 91
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=8.2e-25 Score=152.90 Aligned_cols=126 Identities=28% Similarity=0.392 Sum_probs=111.4
Q ss_pred cCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHH
Q 043678 33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEA 112 (303)
Q Consensus 33 ~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 112 (303)
+|.||||+| +..|+.+++++|++ .+.+++..+..|.||||+|+..++.+++++|++.|+++
T Consensus 1 ~g~t~L~~A--~~~~~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------------- 61 (126)
T 1n0r_A 1 NGRTPLHLA--ARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV------------- 61 (126)
T ss_dssp CCCCHHHHH--HHHTCHHHHHHHHH----HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-------------
T ss_pred CCccHHHHH--HHcCcHHHHHHHHH----cCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-------------
Confidence 489999999 99999999999998 58889999999999999999999999999999998774
Q ss_pred hhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccch
Q 043678 113 FRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNL 192 (303)
Q Consensus 113 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 192 (303)
+.++..|.||||+|+..++.+++++|++.|+++
T Consensus 62 -----~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~------------------------------------------ 94 (126)
T 1n0r_A 62 -----NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV------------------------------------------ 94 (126)
T ss_dssp -----TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------------------------------------------
T ss_pred -----cccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC------------------------------------------
Confidence 478899999999999999999999988776652
Q ss_pred hchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCc
Q 043678 193 IKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK 241 (303)
Q Consensus 193 ~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~ 241 (303)
+..+. .|.|||++|+..|+.+++++|+++|++
T Consensus 95 -~~~~~----------------~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 95 -NAKDK----------------NGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp -TCCCT----------------TSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred -cccCC----------------CCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 22333 455779999999999999999999985
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.91 E-value=2.9e-25 Score=157.57 Aligned_cols=124 Identities=23% Similarity=0.280 Sum_probs=96.4
Q ss_pred ccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCC
Q 043678 68 QVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNN 147 (303)
Q Consensus 68 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~ 147 (303)
.++..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..++.+++++|++.|
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 66 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP------------------NVKDHAGWTPLHEACNHGHLKVVELLLQHK 66 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS------------------CCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------------CcCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 56778888888888888888888888887664 477788888888888888888888877666
Q ss_pred cceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcC
Q 043678 148 LILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKG 227 (303)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~ 227 (303)
++ ++..+. .|.||||+|+..|
T Consensus 67 ~~-------------------------------------------~~~~~~----------------~g~t~L~~A~~~~ 87 (137)
T 3c5r_A 67 AL-------------------------------------------VNTTGY----------------QNDSPLHDAAKNG 87 (137)
T ss_dssp CC-------------------------------------------TTCCCG----------------GGCCHHHHHHHTT
T ss_pred Cc-------------------------------------------ccCcCC----------------CCCCHHHHHHHcC
Confidence 54 222233 3456689999999
Q ss_pred CHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHH
Q 043678 228 DARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNL 269 (303)
Q Consensus 228 ~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~l 269 (303)
+.+++++|+++|++ ++.+|..|.||||+|+..+..+++..+
T Consensus 88 ~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~l~~l 128 (137)
T 3c5r_A 88 HVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLP 128 (137)
T ss_dssp CHHHHHHHHHTTCC-TTCCCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred CHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhccHHHHHhhc
Confidence 99999999999988 488899999999999888875444433
No 93
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.91 E-value=6e-25 Score=163.82 Aligned_cols=138 Identities=17% Similarity=0.144 Sum_probs=103.9
Q ss_pred cCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHH
Q 043678 33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEA 112 (303)
Q Consensus 33 ~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 112 (303)
.|.||||+| +..|+.+++++|++ +.+++.++..|.||||+|+..|+.+++++|+++|++++
T Consensus 43 ~g~t~L~~A--~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~------------ 103 (183)
T 3deo_A 43 EYETPWWTA--ARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD------------ 103 (183)
T ss_dssp HHHHHHHHH--HHTTCHHHHHHHTT-----TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT------------
T ss_pred CCCCHHHHH--HHcCCHHHHHHHHh-----cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------
Confidence 378888888 88888888888876 66778888888888888888888888888888887643
Q ss_pred hhhhhcccc-CCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccc
Q 043678 113 FRQMIRMVN-NEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKN 191 (303)
Q Consensus 113 ~~~~~~~~~-~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 191 (303)
..+ ..|+||||+|+..|+.+++++|++.|+++
T Consensus 104 ------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~----------------------------------------- 136 (183)
T 3deo_A 104 ------HRDMRGGLTALHMAAGYVRPEVVEALVELGADI----------------------------------------- 136 (183)
T ss_dssp ------CCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCT-----------------------------------------
T ss_pred ------cCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCC-----------------------------------------
Confidence 566 77888888888888888888877666653
Q ss_pred hhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhc
Q 043678 192 LIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE 238 (303)
Q Consensus 192 ~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~ 238 (303)
+..+..|.||+++++.......+.++|++|++.|..+++++|.++
T Consensus 137 --~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 137 --EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp --TCCCTTSCCHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred --cCCCCCCCCHHHHHHHhccCcccccHHHHHHHcCHHHHHHHHHHh
Confidence 344445555555444444444566788888888888888888764
No 94
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.91 E-value=3.3e-25 Score=177.64 Aligned_cols=122 Identities=18% Similarity=0.173 Sum_probs=103.8
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhhh------hcccCCchhhhhhhhcc---cchhhHHHHHHHHHhCchhhhccccCC
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESLL------TAKAKNTILHINIISSE---RENVSTKFVEEILEKCPALLLQVNAKG 73 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~------~~~~g~t~Lh~A~~~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~g 73 (303)
++|+.|+..|+.+.++.|++.|++... .+..|.||||+| +.. |+.+++++|++ .|++++.+|..|
T Consensus 153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A--~~~~~~~~~~iv~~Ll~----~gadvn~~d~~G 226 (301)
T 2b0o_E 153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLA--VKVANQASLPLVDFIIQ----NGGHLDAKAADG 226 (301)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHH--HHTCCTTTHHHHHHHHH----HSSCTTCCCTTC
T ss_pred HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHH--HHhcccCcHHHHHHHHh----cCCCCCCCCCCC
Confidence 469999999999999999988877654 466789999999 765 88899999988 588899999999
Q ss_pred CcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCc
Q 043678 74 DTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNL 148 (303)
Q Consensus 74 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~ 148 (303)
.||||+|+..|+.+++++|+++|+++ +.+|..|.|||++|+..++.+++++|++.++
T Consensus 227 ~TpLh~A~~~g~~~~v~~Ll~~gad~------------------~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga 283 (301)
T 2b0o_E 227 NTALHYAALYNQPDCLKLLLKGRALV------------------GTVNEAGETALDIARKKHHKECEELLEQAQA 283 (301)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCC------------------SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCC------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC
Confidence 99999999999999999999988874 4788899999999999999888888665544
No 95
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.91 E-value=1.2e-25 Score=175.19 Aligned_cols=160 Identities=21% Similarity=0.196 Sum_probs=128.9
Q ss_pred cCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHH
Q 043678 33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEA 112 (303)
Q Consensus 33 ~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 112 (303)
.+.+++..+ +..|+.+.+..+.. .+. ..+..|.||||+|+..|+.+++++|++ |++
T Consensus 14 ~~~~~~l~~--~~~g~~~~~~~~~~----~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-------------- 69 (244)
T 3ui2_A 14 EGAMEYLIE--WKDGHSPSWVPSSY----IAA---DVVSEYETPWWTAARKADEQALSQLLE-DRD-------------- 69 (244)
T ss_dssp TTEEEEEEE--ESSCCCCEEEEGGG----SCH---HHHHHHHHHHHHHHTTTCHHHHHHTTT-TCC--------------
T ss_pred CCccHHHHH--HHcCCCcccccccc----ccc---ccccCCCCHHHHHHHcCCHHHHHHHHc-CCC--------------
Confidence 366788888 88888777666544 333 344678999999999999999999999 776
Q ss_pred hhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccch
Q 043678 113 FRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNL 192 (303)
Q Consensus 113 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 192 (303)
++.+|..|.||||+|+..|+.+++++|++.|++++
T Consensus 70 ----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~----------------------------------------- 104 (244)
T 3ui2_A 70 ----VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD----------------------------------------- 104 (244)
T ss_dssp ----TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT-----------------------------------------
T ss_pred ----CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-----------------------------------------
Confidence 44889999999999999999999999888877532
Q ss_pred hchhh-hcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhh
Q 043678 193 IKETD-QYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLE 271 (303)
Q Consensus 193 ~~~~~-~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~ 271 (303)
..+ . .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++
T Consensus 105 --~~~~~----------------~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~~--------- 156 (244)
T 3ui2_A 105 --HRDMR----------------GGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILK--------- 156 (244)
T ss_dssp --CCCSS----------------SCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHHT---------
T ss_pred --cCCCC----------------CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHHHh---------
Confidence 222 2 356779999999999999999999999 58999999999999986433
Q ss_pred cccchhcccccCCCCCCcHHHHHHhcCCCC
Q 043678 272 NNSLARSLIDEGDAKGNTPLHVLAAVRPKE 301 (303)
Q Consensus 272 ~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~ 301 (303)
...+.|||++|++.|+.+
T Consensus 157 ------------~~~~~~~l~~a~~~g~~~ 174 (244)
T 3ui2_A 157 ------------TTPKGNPMQFGRRIGLEK 174 (244)
T ss_dssp ------------TCCCSSHHHHHHHHHHHH
T ss_pred ------------ccCCCCHHHHHHHcChHH
Confidence 245778888888877644
No 96
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.91 E-value=7.4e-26 Score=168.74 Aligned_cols=133 Identities=23% Similarity=0.264 Sum_probs=112.2
Q ss_pred cccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCc
Q 043678 69 VNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNL 148 (303)
Q Consensus 69 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~ 148 (303)
.+..|.||||+|+..|+.+++++|++ |++ ++..|..|+||||+|+..|+.+++++|++.|+
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~------------------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga 100 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRD------------------VDAVDENGRTALLFVAGLGSDKCVRLLAEAGA 100 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSC------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCC------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 45688999999999999999999999 766 44889999999999999999999999888777
Q ss_pred ceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhh-hcCCCcccccccccccCCcccHHhHHHhcC
Q 043678 149 ILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETD-QYGWTPIQSTSNIADKDRKMTALHLAAGKG 227 (303)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~ 227 (303)
+++ ..+ . .|.||||+|+..|
T Consensus 101 ~~~-------------------------------------------~~~~~----------------~g~tpL~~A~~~~ 121 (183)
T 3deo_A 101 DLD-------------------------------------------HRDMR----------------GGLTALHMAAGYV 121 (183)
T ss_dssp CTT-------------------------------------------CCCSS----------------SSCCHHHHHHHTT
T ss_pred CCC-------------------------------------------cCCCC----------------CCCCHHHHHHhcC
Confidence 532 222 2 4567799999999
Q ss_pred CHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCC
Q 043678 228 DARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKE 301 (303)
Q Consensus 228 ~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~ 301 (303)
+.+++++|+++|++ ++.+|..|+||||+|++.++. ..+.+||++|++.|+.+
T Consensus 122 ~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~---------------------~~~~~~l~~a~~~~~~~ 173 (183)
T 3deo_A 122 RPEVVEALVELGAD-IEVEDERGLTALELAREILKT---------------------TPKGNPMQFGRRIGLEK 173 (183)
T ss_dssp CHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHHT---------------------CCCCSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhccC---------------------cccccHHHHHHHcCHHH
Confidence 99999999999999 589999999999999986653 34678888888877654
No 97
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.91 E-value=3.9e-25 Score=153.87 Aligned_cols=114 Identities=19% Similarity=0.140 Sum_probs=103.7
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
++|||.|+..|+.+++++|++.+.+....+..|.||||+| +..|+.+++++|++ .|.+++.+|..|.||||+|+
T Consensus 8 ~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYA--ADCGQLEILEFLLL----KGADINAPDKHHITPLLSAV 81 (123)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHH--HHTTCHHHHHHHHT----TTCCTTCCCTTSCCHHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHH--HHcCCHHHHHHHHH----cCCCCCcCCCCCCCHHHHHH
Confidence 4899999999999999999999988777887899999999 99999999999998 79999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHH
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDL 139 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~ 139 (303)
..|+.+++++|+++|++++ .+|..|.|||++|...+..++
T Consensus 82 ~~~~~~~v~~Ll~~ga~~~------------------~~~~~g~t~l~~A~~~~~~~l 121 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKGADKT------------------VKGPDGLTAFEATDNQAIKAL 121 (123)
T ss_dssp HHTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHCCCHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCCC------------------CcCCCCCCHHHHhCCHHHHHH
Confidence 9999999999999998754 889999999999955444433
No 98
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.90 E-value=2.6e-25 Score=157.82 Aligned_cols=122 Identities=21% Similarity=0.209 Sum_probs=110.1
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||.|+..|+.+++++|++.|.+....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+
T Consensus 11 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~ 84 (137)
T 3c5r_A 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEA--CNHGHLKVVELLLQ----HKALVNTTGYQNDSPLHDAA 84 (137)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCGGGCCHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCcccCcCCCCCCHHHHHH
Confidence 5899999999999999999999988777788899999999 99999999999998 79999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCC
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNN 147 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~ 147 (303)
..|+.+++++|+++|++++ .+|..|.|||++|+..+..+++++|.+.+
T Consensus 85 ~~~~~~~v~~Ll~~ga~~~------------------~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 85 KNGHVDIVKLLLSYGASRN------------------AVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp HTTCHHHHHHHHHTTCCTT------------------CCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred HcCCHHHHHHHHHcCCCCC------------------CCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 9999999999999988754 88999999999999999988888766543
No 99
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.90 E-value=8.5e-24 Score=169.41 Aligned_cols=147 Identities=17% Similarity=0.013 Sum_probs=112.5
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhc---CcHHHHHhHhhCCc
Q 043678 72 KGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSH---GNVDLFKLKKTNNL 148 (303)
Q Consensus 72 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~---~~~~~v~~L~~~~~ 148 (303)
.+.++|+.|+..|+.+.++.|++.|++++.... ....+..|.||||+|+.. ++.+++++|++.|+
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~------------~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga 217 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLP------------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG 217 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEE------------CSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSS
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCcccccCC------------CcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCC
Confidence 345789999999999999999999887541000 001578999999999997 78888888776666
Q ss_pred ceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCC
Q 043678 149 ILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGD 228 (303)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~ 228 (303)
+ ++..|.. |.||||+|+..|+
T Consensus 218 d-------------------------------------------vn~~d~~----------------G~TpLh~A~~~g~ 238 (301)
T 2b0o_E 218 H-------------------------------------------LDAKAAD----------------GNTALHYAALYNQ 238 (301)
T ss_dssp C-------------------------------------------TTCCCTT----------------CCCHHHHHHHTTC
T ss_pred C-------------------------------------------CCCCCCC----------------CCCHHHHHHHcCC
Confidence 4 3344443 4566999999999
Q ss_pred HHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCC
Q 043678 229 ARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPK 300 (303)
Q Consensus 229 ~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~ 300 (303)
.+++++|+++|++ ++.+|..|.||||+|+..++.+++++|++. |++ .|.||||+|++.|+.
T Consensus 239 ~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~----ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 239 PDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQA----QAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHH----HHH------TTSSCCC--------
T ss_pred HHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHh----cCC------CCCChhHHHHhcCCc
Confidence 9999999999999 589999999999999999999999888884 443 589999999999874
No 100
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.90 E-value=8e-25 Score=168.38 Aligned_cols=134 Identities=24% Similarity=0.216 Sum_probs=108.8
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhC-chhhhccccCCCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKC-PALLLQVNAKGDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~-~~~~~~~~~~g~tpL~~A 80 (303)
.||||.|+..|+.+++++|++.|++....+..|.||||+| +..|+.+++++|++ . |.+++.+|..|.||||+|
T Consensus 74 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~~g~~~~~~d~~g~tpL~~A 147 (222)
T 3ehr_A 74 DNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWA--CHGGHKDIVEMLFT----QPNIELNQQNKLGDTALHAA 147 (222)
T ss_dssp SCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHTT----STTCCCCCCCTTSCCHHHHH
T ss_pred ccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHH--HHcCCHHHHHHHHc----CCCCCccccCCCCCCHHHHH
Confidence 5899999999999999999999988777788899999999 99999999999998 5 999999999999999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccc
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKT 159 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~ 159 (303)
+..|+.+++++|+++|+++ +.+|..|.|||++|+..++.++++.|...++.....+..++.
T Consensus 148 ~~~~~~~~v~~Ll~~ga~~------------------~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~l 208 (222)
T 3ehr_A 148 AWKGYADIVQLLLAKGART------------------DLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYL 208 (222)
T ss_dssp HHHTCHHHHHHHHHHTCCS------------------CCCCTTSCCHHHHCCSHHHHHHHC------------------
T ss_pred HHcCCHHHHHHHHHcCCCC------------------ccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhhhc
Confidence 9999999999999999875 488999999999999999999999999988877666665543
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.89 E-value=5.8e-24 Score=163.55 Aligned_cols=140 Identities=23% Similarity=0.220 Sum_probs=106.6
Q ss_pred hccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhC
Q 043678 67 LQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTN 146 (303)
Q Consensus 67 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~ 146 (303)
+..+..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.
T Consensus 67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 128 (222)
T 3ehr_A 67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV------------------NGLDKAGSTALYWACHGGHKDIVEMLFTQ 128 (222)
T ss_dssp HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHTTS
T ss_pred cccccccccccccccccCcHHHHHHHHhCCCCc------------------cccCCCCCCHHHHHHHcCCHHHHHHHHcC
Confidence 446778999999999999999999999998774 47889999999999999999999998876
Q ss_pred -CcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHh
Q 043678 147 -NLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAG 225 (303)
Q Consensus 147 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~ 225 (303)
|+++ +..+. .|.||||+|+.
T Consensus 129 ~g~~~-------------------------------------------~~~d~----------------~g~tpL~~A~~ 149 (222)
T 3ehr_A 129 PNIEL-------------------------------------------NQQNK----------------LGDTALHAAAW 149 (222)
T ss_dssp TTCCC-------------------------------------------CCCCT----------------TSCCHHHHHHH
T ss_pred CCCCc-------------------------------------------cccCC----------------CCCCHHHHHHH
Confidence 6653 33333 34567999999
Q ss_pred cCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCC
Q 043678 226 KGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGN 288 (303)
Q Consensus 226 ~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~ 288 (303)
.|+.+++++|+++|++ ++.+|..|.||||+|+..++.++++.+++ .++.....+..|+
T Consensus 150 ~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~----~~~~~~~~~~~~~ 207 (222)
T 3ehr_A 150 KGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQG----TDAVRTLSNAEDY 207 (222)
T ss_dssp HTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC---------------------
T ss_pred cCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhc----cchhhhccchhhh
Confidence 9999999999999999 58999999999999999999766666665 4565665555443
No 102
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.89 E-value=1.7e-23 Score=145.54 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=33.0
Q ss_pred cCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCc
Q 043678 71 AKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNL 148 (303)
Q Consensus 71 ~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~ 148 (303)
..|.||||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..++.+++++|++.|+
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 64 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDV------------------NRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCT------------------TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCc------------------CccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 34556666666666666666666655442 2455555566666655555555555444443
No 103
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.88 E-value=1.4e-22 Score=133.47 Aligned_cols=93 Identities=28% Similarity=0.397 Sum_probs=81.3
Q ss_pred cCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHH
Q 043678 33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEA 112 (303)
Q Consensus 33 ~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 112 (303)
+|.||||+| +..|+.+++++|++ .|.+++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 1 ~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~------------ 62 (93)
T 1n0q_A 1 NGRTPLHLA--ARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN------------ 62 (93)
T ss_dssp --CCHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------
T ss_pred CCCcHHHHH--HHcCCHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------
Confidence 388999999 99999999999988 788999999999999999999999999999999887744
Q ss_pred hhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcc
Q 043678 113 FRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLI 149 (303)
Q Consensus 113 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~ 149 (303)
.+|..|.||||+|+..|+.+++++|++.|++
T Consensus 63 ------~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 63 ------AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp ------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 7888899999999999999999998888763
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.87 E-value=8e-23 Score=161.99 Aligned_cols=123 Identities=15% Similarity=0.105 Sum_probs=111.9
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhh------hhcccCCchhhhhhhhcc---cchhhHHHHHHHHHhCchhhhccccCC
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESL------LTAKAKNTILHINIISSE---RENVSTKFVEEILEKCPALLLQVNAKG 73 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~------~~~~~g~t~Lh~A~~~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~g 73 (303)
++|+.|+..|+.+.++.+++.|.+.. ..+..|.||||+| +.. |+.+++++|++ .|++++.+|..|
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A--~~~~~~~~~~~v~~Ll~----~ga~in~~d~~g 205 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLA--VRSVDRTSLHIVDFLVQ----NSGNLDKQTGKG 205 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHH--HHHCCTTTHHHHHHHHH----HCSCTTCCCTTC
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHH--HHhcccchHHHHHHHHH----CCCCccccCCCC
Confidence 57999999999999999999987643 2356699999999 888 89999999999 699999999999
Q ss_pred CcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcc
Q 043678 74 DTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLI 149 (303)
Q Consensus 74 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~ 149 (303)
.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|++.|+.
T Consensus 206 ~TpLh~A~~~g~~~~v~~Ll~~gad~~------------------~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 206 STALHYCCLTDNAECLKLLLRGKASIE------------------IANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCC------------------CccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999999999999999998854 8899999999999999999999999987764
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.87 E-value=9.5e-23 Score=174.79 Aligned_cols=130 Identities=17% Similarity=0.153 Sum_probs=114.3
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhhhh------cccCCchhhhhhh-hcccchhhHHHHHHHHHhCchhhhccccCCCc
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESLLT------AKAKNTILHINII-SSERENVSTKFVEEILEKCPALLLQVNAKGDT 75 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~------~~~g~t~Lh~A~~-~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t 75 (303)
+.|+.|+..|+.+.++.|++.|++.+.. +..|.||||+||. +..|+.+++++|++ .|++++.+|..|.|
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~----~ga~vn~~d~~g~T 209 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ----NGGHLDAKAADGNT 209 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHH----HSCCTTCCCSSSCC
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHH----cCCCCCccCCCCCc
Confidence 4699999999999999999999876644 6679999999954 44899999999999 69999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeec
Q 043678 76 PLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRD 154 (303)
Q Consensus 76 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~ 154 (303)
|||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.|+++....
T Consensus 210 pLh~A~~~g~~~~v~~Ll~~ga~~------------------~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~ 270 (497)
T 3lvq_E 210 ALHYAALYNQPDCLKLLLKGRALV------------------GTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFP 270 (497)
T ss_dssp HHHHHTTTTCHHHHHHHHHTCCCC------------------SCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCCc
Confidence 999999999999999999999885 4889999999999999999999999999999866643
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.86 E-value=1.9e-22 Score=165.15 Aligned_cols=122 Identities=18% Similarity=0.238 Sum_probs=113.4
Q ss_pred hhHHHHHhc-CCChhHHHHHHHHHHhhhhc--ccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHH
Q 043678 3 LNFFKAASA-GNSEPFKDMARDVIESLLTA--KAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHL 79 (303)
Q Consensus 3 ~~L~~A~~~-g~~~~v~~ll~~~~~~~~~~--~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~ 79 (303)
++||.|+.. |+.++++.|+++|++.+..+ ..|.||||+| +..|+.+++++|++ .|++++.+|..|.||||+
T Consensus 201 t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~A--a~~g~~~iv~~LL~----~Gadvn~~d~~G~TpLh~ 274 (368)
T 3jue_A 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQA--TAANSLLACEFLLQ----NGANVNQADSAGRGPLHH 274 (368)
T ss_dssp HHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHH
T ss_pred cHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHH--HHCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHH
Confidence 699999999 99999999999998877665 6799999999 99999999999999 799999999999999999
Q ss_pred HHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCc
Q 043678 80 AAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNL 148 (303)
Q Consensus 80 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~ 148 (303)
|+..|+.+++++|+++|++++ ..|..|.||||+|+..++.+++++|+..+.
T Consensus 275 A~~~g~~~~v~~LL~~Gad~~------------------~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~ 325 (368)
T 3jue_A 275 ATILGHTGLACLFLKRGADLG------------------ARDSEGRDPLTIAMETANADIVTLLRLAKM 325 (368)
T ss_dssp HHHHTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHcCcHHHHHHHHHCcCCCC------------------CcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 999999999999999998854 889999999999999999999999886553
No 107
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.86 E-value=7.8e-22 Score=161.50 Aligned_cols=149 Identities=15% Similarity=0.119 Sum_probs=107.1
Q ss_pred cCCCcHHHHHHHh-CCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhcccc--CCCccHHHHHHhcCcHHHHHhHhhCC
Q 043678 71 AKGDTPLHLAAKF-GHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVN--NEKNTALHEAVSHGNVDLFKLKKTNN 147 (303)
Q Consensus 71 ~~g~tpL~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~t~l~~A~~~~~~~~v~~L~~~~ 147 (303)
..+.||||+|+.. ++.+++++|++.|++++ ..+ ..|.||||+|+..|+.+++++|++.|
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn------------------~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~G 258 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAHGADVN------------------WVNGGQDNATPLIQATAANSLLACEFLLQNG 258 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTT------------------CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHcCCCCC------------------ccccccCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 3456899999999 99999999999998754 555 78999999999999999999988777
Q ss_pred cceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcC
Q 043678 148 LILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKG 227 (303)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~ 227 (303)
++ ++..|. .|.||||+|+..|
T Consensus 259 ad-------------------------------------------vn~~d~----------------~G~TpLh~A~~~g 279 (368)
T 3jue_A 259 AN-------------------------------------------VNQADS----------------AGRGPLHHATILG 279 (368)
T ss_dssp CC-------------------------------------------TTCCCT----------------TSCCHHHHHHHHT
T ss_pred CC-------------------------------------------CCCCCC----------------CCCCHHHHHHHcC
Confidence 75 333333 3456699999999
Q ss_pred CHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcC
Q 043678 228 DARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVR 298 (303)
Q Consensus 228 ~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~ 298 (303)
+.+++++|+++|++ ++..|..|.||||+|+..++.+++++|++.... +++....+..+.|+++++....
T Consensus 280 ~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~-~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 280 HTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMR-EAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------
T ss_pred cHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-cccccccCCCCCCHHHHHHHHH
Confidence 99999999999999 589999999999999999999999998876543 3445566778889988776543
No 108
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.85 E-value=4.2e-22 Score=131.16 Aligned_cols=90 Identities=28% Similarity=0.337 Sum_probs=86.0
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||.|+..|+.+++++|++.|++....+..|.||||+| +..|+.+++++|++ .|.+++.+|..|.||||+|+
T Consensus 3 ~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A--~~~~~~~~v~~Ll~----~ga~~~~~d~~g~t~l~~A~ 76 (93)
T 1n0q_A 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA--ARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAA 76 (93)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHH
Confidence 5899999999999999999999998888888899999999 99999999999999 89999999999999999999
Q ss_pred HhCCHHHHHHHHHHhH
Q 043678 82 KFGHFDIVRVLIERAK 97 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~ 97 (303)
..|+.+++++|+++|+
T Consensus 77 ~~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 77 RNGHLEVVKLLLEAGA 92 (93)
T ss_dssp HTTCHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHcCC
Confidence 9999999999999885
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.84 E-value=6.5e-21 Score=163.44 Aligned_cols=135 Identities=21% Similarity=0.124 Sum_probs=107.0
Q ss_pred CchhhhhhhhcccchhhHHHHHHHHHhCchhhhcc------ccCCCcHHHHHHH---hCCHHHHHHHHHHhHHhhcCchH
Q 043678 35 NTILHINIISSERENVSTKFVEEILEKCPALLLQV------NAKGDTPLHLAAK---FGHFDIVRVLIERAKLAQRGDEE 105 (303)
Q Consensus 35 ~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~------~~~g~tpL~~A~~---~~~~~~v~~Ll~~~~~~~~~~~~ 105 (303)
.+.||.| +..|+.+.++.|++ .|.+++.. +..|.||||+||. .|+.+++++|+++|+++
T Consensus 133 ~~~L~~A--~~~g~~~~v~~ll~----~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v------ 200 (497)
T 3lvq_E 133 PQRLWTA--ICNRDLLSVLEAFA----NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL------ 200 (497)
T ss_dssp HHHHHHH--HHHTCHHHHHHHHH----TTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT------
T ss_pred HHHHHHH--HhccCHHHHHHHHh----hcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC------
Confidence 3579999 99999999999998 78888877 8899999999977 89999999999999875
Q ss_pred HHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHH
Q 043678 106 LENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKL 185 (303)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (303)
+.+|..|+||||+|+..|+.+++++|++.|+++
T Consensus 201 ------------n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~----------------------------------- 233 (497)
T 3lvq_E 201 ------------DAKAADGNTALHYAALYNQPDCLKLLLKGRALV----------------------------------- 233 (497)
T ss_dssp ------------TCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCC-----------------------------------
T ss_pred ------------CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-----------------------------------
Confidence 488999999999999999999999988888763
Q ss_pred HHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHH
Q 043678 186 LEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMV 259 (303)
Q Consensus 186 l~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~ 259 (303)
+..|.. |.||||+|+..|+.+++++|+++|+++ +. +|+|.+..
T Consensus 234 --------~~~d~~----------------g~tpl~~A~~~~~~~~~~~Ll~~ga~~-~~------~~~h~~~~ 276 (497)
T 3lvq_E 234 --------GTVNEA----------------GETALDIARKKHHKECEELLEQAQAGT-FA------FPLHVDYS 276 (497)
T ss_dssp --------SCCCTT----------------CCCHHHHHHHTTCHHHHHHHHHTCC-------------------
T ss_pred --------CCcCCC----------------CCCHHHHHHHcCCHHHHHHHHHhCCCC-CC------Ccceeecc
Confidence 333333 446699999999999999999999985 43 56666543
No 110
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.83 E-value=1.5e-21 Score=133.98 Aligned_cols=108 Identities=27% Similarity=0.291 Sum_probs=95.7
Q ss_pred hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHH
Q 043678 29 LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELEN 108 (303)
Q Consensus 29 ~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~ 108 (303)
..+..|.||||+| +..|+.+++++|++ .+.+++.++..|.||||+|+..++.+++++|+++|+++
T Consensus 4 ~~d~~g~t~L~~A--~~~~~~~~~~~Ll~----~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~--------- 68 (115)
T 2l6b_A 4 WGSKDGNTPLHNA--AKNGHAEEVKKLLS----KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV--------- 68 (115)
T ss_dssp CCSCSSCCHHHHH--HHHTCHHHHHHHTT----TTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT---------
T ss_pred ccCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC---------
Confidence 4566799999999 99999999999998 78889999999999999999999999999999998774
Q ss_pred HHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 109 RIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 109 ~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
+.+|..|.||||+|+..++.+++++|++.|++++..+..+.++
T Consensus 69 ---------~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 69 ---------NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp ---------TCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred ---------cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 4788899999999999999999999999999988888777664
No 111
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.82 E-value=2.8e-20 Score=147.35 Aligned_cols=125 Identities=18% Similarity=0.111 Sum_probs=106.9
Q ss_pred CchhhhhhhhcccchhhHHHHHHHHHhCchh------hhccccCCCcHHHHHHHh---CCHHHHHHHHHHhHHhhcCchH
Q 043678 35 NTILHINIISSERENVSTKFVEEILEKCPAL------LLQVNAKGDTPLHLAAKF---GHFDIVRVLIERAKLAQRGDEE 105 (303)
Q Consensus 35 ~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~------~~~~~~~g~tpL~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~ 105 (303)
.++|+.| +..|+.+.++.++. .|.+ ++..+..|.||||+|+.. |+.+++++|+++|+++
T Consensus 131 l~~l~~a--~~~~d~~~~~~ll~----~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i------ 198 (278)
T 1dcq_A 131 LHSLCEA--VKTRDIFGLLQAYA----DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL------ 198 (278)
T ss_dssp HHHHHHH--HHTTCHHHHHHHHH----TTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT------
T ss_pred hhhhhhH--hhhcccHHHHHHHH----hhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc------
Confidence 3589999 99999999999888 6776 444578899999999999 8999999999999875
Q ss_pred HHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHH
Q 043678 106 LENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKL 185 (303)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (303)
+.+|..|.||||+|+..|+.+++++|++.|++
T Consensus 199 ------------n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad------------------------------------ 230 (278)
T 1dcq_A 199 ------------DKQTGKGSTALHYCCLTDNAECLKLLLRGKAS------------------------------------ 230 (278)
T ss_dssp ------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------------------------------
T ss_pred ------------cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------------------------------
Confidence 48899999999999999999999998888776
Q ss_pred HHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcc
Q 043678 186 LEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKC 242 (303)
Q Consensus 186 l~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~ 242 (303)
++..|.. |.||||+|+..|+.+++++|+++|++.
T Consensus 231 -------~~~~d~~----------------g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 231 -------IEIANES----------------GETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp -------TTCCCTT----------------SCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred -------CCCccCC----------------CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 3333443 456699999999999999999999864
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.82 E-value=1.9e-20 Score=128.35 Aligned_cols=109 Identities=19% Similarity=0.178 Sum_probs=92.3
Q ss_pred cccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhh
Q 043678 119 MVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQ 198 (303)
Q Consensus 119 ~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 198 (303)
.+|..|.||||+|+..|+.+++++|++.++++ +..+.
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-------------------------------------------~~~d~ 40 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-------------------------------------------NARSK 40 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-------------------------------------------SCCCS
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------------------------------------------CCcCC
Confidence 57889999999999999999999988777652 33333
Q ss_pred cCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhc
Q 043678 199 YGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARS 278 (303)
Q Consensus 199 ~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~ 278 (303)
.|.||||+|+..++.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++ .|+
T Consensus 41 ----------------~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~----~ga 99 (115)
T 2l6b_A 41 ----------------DGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHLAKKNGHHEIVKLLDA----KGA 99 (115)
T ss_dssp ----------------SSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTTHHHHTTTCHHHHHHHHT----TSS
T ss_pred ----------------CCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHCCCHHHHHHHHH----cCC
Confidence 345669999999999999999999999 58999999999999999999888888887 588
Q ss_pred ccccCCCCCCcHH
Q 043678 279 LIDEGDAKGNTPL 291 (303)
Q Consensus 279 ~~~~~d~~g~tpL 291 (303)
+++.++..|.+|-
T Consensus 100 ~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 100 DVNARSWGSSHHH 112 (115)
T ss_dssp SHHHHSCCCC---
T ss_pred CCCcCCccccccc
Confidence 8999999999884
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.77 E-value=2.9e-19 Score=121.26 Aligned_cols=90 Identities=23% Similarity=0.333 Sum_probs=82.3
Q ss_pred hcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHH
Q 043678 30 TAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENR 109 (303)
Q Consensus 30 ~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~ 109 (303)
.+.+|.||||+| +..|+.+++++|++ .|.+++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus 20 ~~~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~---------- 83 (110)
T 2zgd_A 20 MGSDLGKKLLEA--ARAGQDDEVRILMA----NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV---------- 83 (110)
T ss_dssp --CCHHHHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT----------
T ss_pred cCCccchHHHHH--HHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc----------
Confidence 344599999999 99999999999998 79999999999999999999999999999999998875
Q ss_pred HHHhhhhhccccCCCccHHHHHHhcCcHHHHHhH
Q 043678 110 IEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLK 143 (303)
Q Consensus 110 ~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L 143 (303)
+.+|..|.||||+|+..|+.+++++|
T Consensus 84 --------~~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 84 --------XAQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp --------TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred --------cccccCCCcHHHHHHHcCCHHHHHHh
Confidence 48889999999999999999999886
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.73 E-value=3.1e-18 Score=116.19 Aligned_cols=85 Identities=19% Similarity=0.253 Sum_probs=80.4
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.+|||.|+..|+.+++++|++.|++....+..|.||||+| +..|+.+++++|++ .|.+++.+|..|.||||+|+
T Consensus 25 ~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A--~~~~~~~~v~~Ll~----~ga~~~~~d~~g~tpl~~A~ 98 (110)
T 2zgd_A 25 GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLA--ARNGHLEVVKLLLE----AGADVXAQDKFGKTAFDISI 98 (110)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCccccccCCCcHHHHHH
Confidence 4799999999999999999999988777788899999999 99999999999999 79999999999999999999
Q ss_pred HhCCHHHHHHH
Q 043678 82 KFGHFDIVRVL 92 (303)
Q Consensus 82 ~~~~~~~v~~L 92 (303)
..|+.+++++|
T Consensus 99 ~~~~~~~~~~L 109 (110)
T 2zgd_A 99 DNGNEDLAEIL 109 (110)
T ss_dssp HHTCHHHHHHH
T ss_pred HcCCHHHHHHh
Confidence 99999999986
No 115
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=62.31 E-value=2.6 Score=21.07 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=9.0
Q ss_pred HHHHHhcCCChhHHHH
Q 043678 5 FFKAASAGNSEPFKDM 20 (303)
Q Consensus 5 L~~A~~~g~~~~v~~l 20 (303)
+..||..|+++.++.|
T Consensus 17 iyvA~seGd~etv~~L 32 (40)
T 1gp8_A 17 MDAAASKGDVETYRKL 32 (40)
T ss_dssp HHHHHTTSCHHHHHHH
T ss_pred HHHHHhcCCHHHHHHH
Confidence 4455566666655554
No 116
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=33.96 E-value=61 Score=26.58 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=35.4
Q ss_pred hcCCHHHHHHHhhcCCcccccc-------------cCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 225 GKGDARTVERIISENPKCYELV-------------DNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 225 ~~~~~~~v~~Ll~~g~~~~~~~-------------~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
..|+...|+.-+..|+++.... -.-|.|.+|+|++..+.+++..|+..
T Consensus 31 ~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~~ 91 (454)
T 3zrh_A 31 VEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLTE 91 (454)
T ss_dssp HHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhhc
Confidence 4577888888888877742111 13589999999999998888888763
Done!