BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043679
         (130 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
           Atm 3)
 pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
           Atm 3)
 pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
           Atm 3)
 pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
           Atm 2)
 pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
           Atm 2)
 pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
           Atm 2)
 pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
           Atm 1)
 pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
           Atm 1)
 pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
           Atm 1)
          Length = 697

 Score = 31.2 bits (69), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 20/85 (23%)

Query: 32  HIVKYPTSN--AAGSVIFKLHHALGD------GF------SLMGALLSCLQRADDPSRPL 77
           H+  Y  S   + G   F+L H  GD      GF      +L G L+S +Q + DP    
Sbjct: 486 HLQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQG 545

Query: 78  TFPSVR-----MRPDINGSSIFKNV 97
            FP  R      RP+  GS  F+N 
Sbjct: 546 LFPPTRPEDSKKRPETAGSQ-FRNA 569


>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
 pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
 pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
 pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
          Length = 697

 Score = 31.2 bits (69), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 20/85 (23%)

Query: 32  HIVKYPTSN--AAGSVIFKLHHALGD------GF------SLMGALLSCLQRADDPSRPL 77
           H+  Y  S   + G   F+L H  GD      GF      +L G L+S +Q + DP    
Sbjct: 486 HLQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQG 545

Query: 78  TFPSVR-----MRPDINGSSIFKNV 97
            FP  R      RP+  GS  F+N 
Sbjct: 546 LFPPTRPEDSKKRPETAGSQ-FRNA 569


>pdb|1CS0|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-glutamate Gamma-semialdehyde
 pdb|1CS0|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-glutamate Gamma-semialdehyde
 pdb|1CS0|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-glutamate Gamma-semialdehyde
 pdb|1CS0|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-glutamate Gamma-semialdehyde
 pdb|1KEE|B Chain B, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
 pdb|1KEE|D Chain D, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
 pdb|1KEE|F Chain F, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
 pdb|1KEE|H Chain H, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
          Length = 382

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 61  GALLSCLQRADDPSRPLTFPSVRMRPDINGSSIFKNVPKFFNTVFNTASDFCWS 114
           GA   C+   D+P   L     R  P +NG  + K V         TA  + W+
Sbjct: 126 GAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEV--------TTAEAYSWT 171


>pdb|1T36|B Chain B, Crystal Structure Of E. Coli Carbamoyl Phosphate
           Synthetase Small Subunit Mutant C248d Complexed With
           Uridine 5'-Monophosphate
 pdb|1T36|D Chain D, Crystal Structure Of E. Coli Carbamoyl Phosphate
           Synthetase Small Subunit Mutant C248d Complexed With
           Uridine 5'-Monophosphate
 pdb|1T36|F Chain F, Crystal Structure Of E. Coli Carbamoyl Phosphate
           Synthetase Small Subunit Mutant C248d Complexed With
           Uridine 5'-Monophosphate
 pdb|1T36|H Chain H, Crystal Structure Of E. Coli Carbamoyl Phosphate
           Synthetase Small Subunit Mutant C248d Complexed With
           Uridine 5'-Monophosphate
          Length = 382

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 61  GALLSCLQRADDPSRPLTFPSVRMRPDINGSSIFKNVPKFFNTVFNTASDFCWS 114
           GA   C+   D+P   L     R  P +NG  + K V         TA  + W+
Sbjct: 126 GAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEV--------TTAEAYSWT 171


>pdb|1C30|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 pdb|1C30|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 pdb|1C30|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 pdb|1C30|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 pdb|1C3O|B Chain B, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
 pdb|1C3O|D Chain D, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
 pdb|1C3O|F Chain F, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
 pdb|1C3O|H Chain H, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
          Length = 382

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 61  GALLSCLQRADDPSRPLTFPSVRMRPDINGSSIFKNVPKFFNTVFNTASDFCWS 114
           GA   C+   D+P   L     R  P +NG  + K V         TA  + W+
Sbjct: 126 GAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEV--------TTAEAYSWT 171


>pdb|1JDB|C Chain C, Carbamoyl Phosphate Synthetase From Escherichia Coli
 pdb|1JDB|F Chain F, Carbamoyl Phosphate Synthetase From Escherichia Coli
 pdb|1JDB|I Chain I, Carbamoyl Phosphate Synthetase From Escherichia Coli
 pdb|1JDB|L Chain L, Carbamoyl Phosphate Synthetase From Escherichia Coli
 pdb|1BXR|B Chain B, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 pdb|1BXR|D Chain D, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 pdb|1BXR|F Chain F, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 pdb|1BXR|H Chain H, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 pdb|1CE8|B Chain B, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
 pdb|1CE8|D Chain D, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
 pdb|1CE8|F Chain F, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
 pdb|1CE8|H Chain H, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
          Length = 382

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 61  GALLSCLQRADDPSRPLTFPSVRMRPDINGSSIFKNVPKFFNTVFNTASDFCWS 114
           GA   C+   D+P   L     R  P +NG  + K V         TA  + W+
Sbjct: 126 GAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEV--------TTAEAYSWT 171


>pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
 pdb|1M6V|D Chain D, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
 pdb|1M6V|F Chain F, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
 pdb|1M6V|H Chain H, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
          Length = 382

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 61  GALLSCLQRADDPSRPLTFPSVRMRPDINGSSIFKNVPKFFNTVFNTASDFCWS 114
           GA   C+   D+P   L     R  P +NG  + K V         TA  + W+
Sbjct: 126 GAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEV--------TTAEAYSWT 171


>pdb|1A9X|B Chain B, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
 pdb|1A9X|D Chain D, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
 pdb|1A9X|F Chain F, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
 pdb|1A9X|H Chain H, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
          Length = 379

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 61  GALLSCLQRADDPSRPLTFPSVRMRPDINGSSIFKNVPKFFNTVFNTASDFCWS 114
           GA   C+   D+P   L     R  P +NG  + K V         TA  + W+
Sbjct: 125 GAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEV--------TTAEAYSWT 170


>pdb|3HQ6|A Chain A, Cytochrome C Peroxidase From G. Sulfurreducens, Wild Type
 pdb|3HQ6|B Chain B, Cytochrome C Peroxidase From G. Sulfurreducens, Wild Type
          Length = 345

 Score = 27.3 bits (59), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 95  KNVPKFFNTVFNTASDFCWSMIKSSLIEDDKTPIRS 130
           +N P   N+VFNTA    W      L E  K P+++
Sbjct: 100 RNAPTVLNSVFNTAQ--FWDGRAKDLAEQAKGPVQA 133


>pdb|3HQ9|A Chain A, Ccpa From G. Sulfurreducens, S134p Variant
 pdb|3HQ9|B Chain B, Ccpa From G. Sulfurreducens, S134p Variant
          Length = 345

 Score = 27.3 bits (59), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 95  KNVPKFFNTVFNTASDFCWSMIKSSLIEDDKTPIRS 130
           +N P   N+VFNTA    W      L E  K P+++
Sbjct: 100 RNAPTVLNSVFNTAQ--FWDGRAKDLAEQAKGPVQA 133


>pdb|3HQ8|A Chain A, Ccpa From G. Sulfurreducens S134pV135K VARIANT
 pdb|3HQ8|B Chain B, Ccpa From G. Sulfurreducens S134pV135K VARIANT
          Length = 345

 Score = 27.3 bits (59), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 95  KNVPKFFNTVFNTASDFCWSMIKSSLIEDDKTPIRS 130
           +N P   N+VFNTA    W      L E  K P+++
Sbjct: 100 RNAPTVLNSVFNTAQ--FWDGRAKDLAEQAKGPVQA 133


>pdb|1NML|A Chain A, Di-Haemic Cytochrome C Peroxidase From Pseudomonas Nautica
           617, Form In (Ph 4.0)
 pdb|1RZ5|A Chain A, Di-Haem Cytochrome C Peroxidase, Form Out
 pdb|1RZ6|A Chain A, Di-Haem Cytochrome C Peroxidase, Form In
          Length = 326

 Score = 26.9 bits (58), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 95  KNVPKFFNTVFNTASDFCWSMIKSSLIEDDKTPIRS 130
           +N P  FN VFN A    W    + L E  K P+++
Sbjct: 78  RNSPTVFNAVFNAAQ--FWDGRAADLAEQAKGPVQA 111


>pdb|1E60|A Chain A, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
           Buffer
 pdb|1E60|C Chain C, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
           Buffer
 pdb|1E61|A Chain A, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
           Buffer
 pdb|1E61|C Chain C, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
           Buffer
          Length = 823

 Score = 26.6 bits (57), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 3   QQFYDKCLQDYLSKLSAEEMPQSQPLWEVHIVKYPTSNAAGSV 45
           + FYD   +    K +  EMP     W   IV++P ++ A  V
Sbjct: 581 KSFYDDAAKQ--GKAAGVEMPAFDAFWAEGIVEFPVTDGADFV 621


>pdb|1E18|A Chain A, Tungsten-Susbstituted Dmso Reductase From Rhodobacter
           Capsulatus
          Length = 823

 Score = 26.6 bits (57), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 3   QQFYDKCLQDYLSKLSAEEMPQSQPLWEVHIVKYPTSNAAGSV 45
           + FYD   +    K +  EMP     W   IV++P ++ A  V
Sbjct: 581 KSFYDDAAKQ--GKAAGVEMPAFDAFWAEGIVEFPVTDGADFV 621


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,961,881
Number of Sequences: 62578
Number of extensions: 144578
Number of successful extensions: 235
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 229
Number of HSP's gapped (non-prelim): 15
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)