Query 043679
Match_columns 130
No_of_seqs 186 out of 716
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 07:17:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03007 WES_acyltransf: Wax e 99.9 2.4E-21 5.3E-26 155.0 13.3 75 6-81 93-167 (263)
2 TIGR02946 acyl_WS_DGAT acyltra 99.4 5.8E-12 1.3E-16 105.7 12.5 68 6-74 87-154 (446)
3 PF07247 AATase: Alcohol acety 98.5 1.6E-07 3.5E-12 79.8 5.8 62 5-67 103-165 (480)
4 PF00668 Condensation: Condens 97.9 3.5E-05 7.5E-10 59.1 7.2 60 6-67 93-153 (301)
5 PRK10252 entF enterobactin syn 97.2 0.00093 2E-08 62.5 6.5 57 6-64 96-154 (1296)
6 PRK12467 peptide synthase; Pro 96.3 0.0095 2.1E-07 62.7 7.2 59 6-66 139-198 (3956)
7 PRK12316 peptide synthase; Pro 96.2 0.011 2.4E-07 63.4 7.0 58 6-65 2688-2746(5163)
8 PRK09294 acyltransferase PapA5 96.0 0.012 2.6E-07 49.3 4.8 43 22-67 93-135 (416)
9 PRK12467 peptide synthase; Pro 95.9 0.018 3.9E-07 60.7 6.9 58 6-65 1204-1262(3956)
10 PRK05691 peptide synthase; Val 95.3 0.049 1.1E-06 57.9 7.4 56 7-64 1819-1875(4334)
11 COG4908 Uncharacterized protei 95.3 0.034 7.4E-07 48.4 5.2 54 11-67 95-150 (439)
12 PRK05691 peptide synthase; Val 95.3 0.05 1.1E-06 57.8 7.3 57 7-65 766-823 (4334)
13 PRK12316 peptide synthase; Pro 94.9 0.081 1.8E-06 57.1 7.5 57 7-65 140-197 (5163)
14 PLN00140 alcohol acetyltransfe 93.4 0.14 3E-06 43.9 4.9 44 26-71 133-179 (444)
15 PLN02663 hydroxycinnamoyl-CoA: 92.3 0.25 5.4E-06 41.8 4.8 39 25-65 129-167 (431)
16 PF02458 Transferase: Transfer 91.6 0.22 4.7E-06 41.5 3.7 37 26-64 132-168 (432)
17 PLN03157 spermidine hydroxycin 90.3 0.57 1.2E-05 40.0 5.2 42 26-69 131-175 (447)
18 PLN02481 Omega-hydroxypalmitat 90.0 0.39 8.5E-06 40.9 3.9 37 26-64 143-179 (436)
19 PF00302 CAT: Chloramphenicol 77.7 2.4 5.3E-05 33.3 3.0 23 43-65 182-204 (206)
20 PRK13757 chloramphenicol acety 68.6 5 0.00011 31.9 2.8 24 43-66 185-208 (219)
21 COG4845 Chloramphenicol O-acet 54.3 15 0.00032 29.6 3.1 23 44-66 185-207 (219)
22 cd02135 Arsenite_oxidase Nitro 47.2 32 0.0007 24.4 3.8 31 6-36 19-49 (160)
23 PRK10828 putative oxidoreducta 42.1 39 0.00084 25.2 3.6 31 6-36 22-52 (183)
24 TIGR03553 F420_FbiB_CTERM F420 40.4 47 0.001 24.7 3.9 33 5-37 17-49 (194)
25 PRK05365 malonic semialdehyde 38.4 52 0.0011 24.7 3.9 33 5-37 27-59 (195)
26 cd02145 BluB Subfamily of the 37.8 52 0.0011 24.6 3.7 33 5-37 18-50 (196)
27 cd02140 Nitroreductase_4 Nitro 36.6 60 0.0013 24.2 3.9 34 5-38 20-54 (192)
28 cd02144 iodotyrosine_dehalogen 36.5 56 0.0012 23.9 3.7 33 5-37 19-51 (193)
29 cd02151 NADPH_oxidoreductase_2 35.5 62 0.0013 23.3 3.8 31 6-36 20-50 (162)
30 cd02148 Nitroreductase_5 Nitro 33.9 69 0.0015 23.7 3.9 33 5-37 20-52 (185)
31 cd02062 Nitro_FMN_reductase Pr 33.0 75 0.0016 21.2 3.7 29 6-34 16-44 (122)
32 cd02136 Nitroreductase Nitrore 32.3 67 0.0014 23.3 3.5 31 6-36 20-50 (178)
33 COG4062 MtrB Tetrahydromethano 29.3 69 0.0015 23.0 2.9 28 4-32 37-64 (108)
34 TIGR02476 BluB cob(II)yrinic a 29.2 85 0.0018 23.7 3.7 32 6-37 28-59 (205)
35 PRK11856 branched-chain alpha- 28.4 33 0.00072 29.2 1.4 32 44-75 376-407 (411)
36 PRK11053 dihydropteridine redu 27.7 93 0.002 23.7 3.7 33 5-37 22-54 (217)
37 cd02139 Nitroreductase_3 Nitro 24.9 1.3E+02 0.0027 21.6 3.8 32 5-36 19-50 (164)
38 PF00881 Nitroreductase: Nitro 23.7 79 0.0017 21.9 2.5 31 5-35 15-45 (165)
39 cd02137 Nitroreductase_1 Nitro 23.6 1.3E+02 0.0029 21.2 3.7 31 6-36 20-50 (148)
40 cd02150 NADPH_oxidoreductase_1 23.4 1.4E+02 0.003 21.5 3.8 32 6-37 19-50 (166)
41 cd02149 NfsB_like_nitroreducta 21.9 1.4E+02 0.0031 21.3 3.6 32 6-37 22-53 (157)
42 cd03370 NADH_oxidase NADPH_oxi 21.5 1.5E+02 0.0033 21.1 3.7 32 5-36 19-50 (156)
43 cd02146 NfsA_FRP This family c 20.2 1.5E+02 0.0032 22.9 3.6 32 6-37 20-51 (229)
44 PF07428 Tri3: 15-O-acetyltran 20.2 2.2E+02 0.0049 24.9 4.9 40 30-69 149-198 (413)
No 1
>PF03007 WES_acyltransf: Wax ester synthase-like Acyl-CoA acyltransferase domain; InterPro: IPR004255 This entry represents the N terminus (approximately 170 residues) of a number of hypothetical plant proteins. O-acyltransferase WSD1 is a bifunctional wax ester synthase/diacylglycerol acyltransferase, which is involved in cuticular wax biosynthesis [].; GO: 0004144 diacylglycerol O-acyltransferase activity
Probab=99.87 E-value=2.4e-21 Score=155.05 Aligned_cols=75 Identities=37% Similarity=0.617 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHhcCCCCCCCcceeeeeeecCCCCCceEEEEEeccccccHHHHHHHHHHhhCCCCCCCCCCCCCC
Q 043679 6 YDKCLQDYLSKLSAEEMPQSQPLWEVHIVKYPTSNAAGSVIFKLHHALGDGFSLMGALLSCLQRADDPSRPLTFPS 81 (130)
Q Consensus 6 ~d~~L~~~vs~l~~~pld~~rPlWe~~vl~~~~~~~~~a~v~k~HHal~DG~sl~~ll~~~~~~~~dp~~~~~~p~ 81 (130)
++++|++++++++++|||++|||||+|+|+|+.++ ++|+++|+|||++||+++++++.++++..+++...+..+.
T Consensus 93 ~~~~l~~~v~~l~~~pLd~~rPlWe~~li~g~~~g-~~Al~~k~HHal~DG~~~~~l~~~l~~~~~~~~~~~~~~~ 167 (263)
T PF03007_consen 93 DRAELQALVSRLASTPLDRSRPLWEVHLIEGLEGG-RFALVLKVHHALADGVSLMRLLAALLDRSPDPPPPPPPPR 167 (263)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCcEEEEEecCCCC-cEEEEEeehhhhhhhHhHHHHHHHHhCCCCCCCCCCCCcc
Confidence 57899999999999999999999999999999877 7999999999999999999999999999888877655543
No 2
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.
Probab=99.39 E-value=5.8e-12 Score=105.67 Aligned_cols=68 Identities=29% Similarity=0.522 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHhcCCCCCCCcceeeeeeecCCCCCceEEEEEeccccccHHHHHHHHHHhhCCCCCCC
Q 043679 6 YDKCLQDYLSKLSAEEMPQSQPLWEVHIVKYPTSNAAGSVIFKLHHALGDGFSLMGALLSCLQRADDPS 74 (130)
Q Consensus 6 ~d~~L~~~vs~l~~~pld~~rPlWe~~vl~~~~~~~~~a~v~k~HHal~DG~sl~~ll~~~~~~~~dp~ 74 (130)
.++++++++++...+|+|.++|+|+++++++..++ ++++++++||+++||.|+..++..+++..+++.
T Consensus 87 ~~~~~~~~~~~~~~~p~dl~~Pl~r~~li~~~~~~-~~~l~~~~HH~i~DG~S~~~l~~~l~~~~~~~~ 154 (446)
T TIGR02946 87 TRRELLELVGRLMSTPLDRSRPLWEMHLIEGLAGG-RFAVLTKVHHALADGVAGLRLLARLLDDDPDPP 154 (446)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCeEEEEEeccCCC-eEEEEEEeehhhhchHHHHHHHHHHcCCCCCCC
Confidence 36789999999999999999999999999977665 799999999999999999999999997765554
No 3
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=98.52 E-value=1.6e-07 Score=79.77 Aligned_cols=62 Identities=23% Similarity=0.336 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHhcCCCCCC-CcceeeeeeecCCCCCceEEEEEeccccccHHHHHHHHHHhh
Q 043679 5 FYDKCLQDYLSKLSAEEMPQS-QPLWEVHIVKYPTSNAAGSVIFKLHHALGDGFSLMGALLSCL 67 (130)
Q Consensus 5 ~~d~~L~~~vs~l~~~pld~~-rPlWe~~vl~~~~~~~~~a~v~k~HHal~DG~sl~~ll~~~~ 67 (130)
..++++.+.+.+.. -|++.. +|+|++.+++...++....++|.+||+++||+|++.+...++
T Consensus 103 ~~~~~l~~~l~~~~-~~~~~~~~P~Wrl~vl~~~~~~~~~~i~f~~~H~i~DG~Sg~~Fh~~ll 165 (480)
T PF07247_consen 103 KFDEELLEILNNHN-FPYDDPTKPLWRLIVLPNEDDESFQFIVFVFHHAIFDGMSGKIFHEDLL 165 (480)
T ss_pred cccHHHHHHHhhcc-cCCCCCCCCCeEEEEECCCCCCcceEEEEEecccccccHHHHHHHHHHH
Confidence 34566776665543 444544 599999999987555466789999999999999986655444
No 4
>PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics. This domain catalyses a condensation reaction to form peptide bonds in non-ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pp-binding). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site []. ; PDB: 2JGP_A 2VSQ_A 1L5A_A 2JUG_A 1Q9J_A.
Probab=97.95 E-value=3.5e-05 Score=59.15 Aligned_cols=60 Identities=18% Similarity=0.314 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHhcCCCCCC-CcceeeeeeecCCCCCceEEEEEeccccccHHHHHHHHHHhh
Q 043679 6 YDKCLQDYLSKLSAEEMPQS-QPLWEVHIVKYPTSNAAGSVIFKLHHALGDGFSLMGALLSCL 67 (130)
Q Consensus 6 ~d~~L~~~vs~l~~~pld~~-rPlWe~~vl~~~~~~~~~a~v~k~HHal~DG~sl~~ll~~~~ 67 (130)
...+..+++.+...+++|.+ -|+++++++....+ +..+++.+||++.||.|+..++..+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~pl~~~~l~~~~~~--~~~l~~~~hH~i~Dg~S~~~l~~~l~ 153 (301)
T PF00668_consen 93 SEEEILELIEQELNRPFDLSEGPLFRFTLIRTSDD--EYFLLISFHHIICDGWSLNILLRELL 153 (301)
T ss_dssp HHHHHHHHHHHHHCC---TCTSBSEEEEEEEEETT--EEEEEEEEEGGG--HHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhhcccccccchhhccccccccc--cchhcccccccccccccchhhhhhhH
Confidence 46788888989999999975 49999999987543 68999999999999999976655433
No 5
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=97.16 E-value=0.00093 Score=62.52 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHhcCCCCCCC--cceeeeeeecCCCCCceEEEEEeccccccHHHHHHHHH
Q 043679 6 YDKCLQDYLSKLSAEEMPQSQ--PLWEVHIVKYPTSNAAGSVIFKLHHALGDGFSLMGALL 64 (130)
Q Consensus 6 ~d~~L~~~vs~l~~~pld~~r--PlWe~~vl~~~~~~~~~a~v~k~HHal~DG~sl~~ll~ 64 (130)
.++++++++.+...+|+|.++ |+|++.++..- +.+..+++.+||.+.||.|+.-++.
T Consensus 96 ~~~~~~~~~~~~~~~~fdl~~~~pl~r~~l~~~~--~~~~~l~~~~HHii~DG~S~~~l~~ 154 (1296)
T PRK10252 96 PHAAAQALMQADLQQDLRVDSGKPLVFHQLIQLG--DNRWYWYQRYHHLLVDGFSFPAITR 154 (1296)
T ss_pred HHHHHHHHHHHHhcCCcCCCCCCCCeEEEEEEEc--CCEEEEEEecCceeEccccHHHHHH
Confidence 455678888888899999887 89999999853 3368999999999999999865544
No 6
>PRK12467 peptide synthase; Provisional
Probab=96.35 E-value=0.0095 Score=62.65 Aligned_cols=59 Identities=19% Similarity=0.388 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHhcCCCCCC-CcceeeeeeecCCCCCceEEEEEeccccccHHHHHHHHHHh
Q 043679 6 YDKCLQDYLSKLSAEEMPQS-QPLWEVHIVKYPTSNAAGSVIFKLHHALGDGFSLMGALLSC 66 (130)
Q Consensus 6 ~d~~L~~~vs~l~~~pld~~-rPlWe~~vl~~~~~~~~~a~v~k~HHal~DG~sl~~ll~~~ 66 (130)
.++.+++++.+...+|+|.. .|+|+++++..-. ++..+++.+||.+.||.|+.-++..+
T Consensus 139 ~~~~~~~~~~~~~~~~fdL~~~pl~r~~l~~~~~--~~~~l~l~~HHii~DG~S~~~l~~el 198 (3956)
T PRK12467 139 RESQIEAYINEEVARPFDLANGPLLRVRLLRLAD--DEHVLVVTLHHIISDGWSMRVLVEEL 198 (3956)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCceEEEEEEECC--CcEEEEEecCeeeEccchHHHHHHHH
Confidence 45678899999999999965 5999999998533 36889999999999999996655443
No 7
>PRK12316 peptide synthase; Provisional
Probab=96.23 E-value=0.011 Score=63.38 Aligned_cols=58 Identities=16% Similarity=0.306 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHhcCCCCCCC-cceeeeeeecCCCCCceEEEEEeccccccHHHHHHHHHH
Q 043679 6 YDKCLQDYLSKLSAEEMPQSQ-PLWEVHIVKYPTSNAAGSVIFKLHHALGDGFSLMGALLS 65 (130)
Q Consensus 6 ~d~~L~~~vs~l~~~pld~~r-PlWe~~vl~~~~~~~~~a~v~k~HHal~DG~sl~~ll~~ 65 (130)
.++++++++.+...+|+|..+ |+|++.++..-. .+..+++.+||++.||.|+.-++..
T Consensus 2688 ~~~~~~~~~~~~~~~~fdl~~~pl~r~~l~~~~~--~~~~l~l~~HHii~DG~S~~~l~~e 2746 (5163)
T PRK12316 2688 ADAAIRQRVAEEIQRPFDLARGPLLRVRLLALDG--QEHVLVITQHHIVSDGWSMQVMVDE 2746 (5163)
T ss_pred CHHHHHHHHHHHhhCCCCCCCCCcEEEEEEEECC--CeEEEEEecCcCcccHhHHHHHHHH
Confidence 456788899999999999876 999999997532 2578999999999999998665543
No 8
>PRK09294 acyltransferase PapA5; Provisional
Probab=95.97 E-value=0.012 Score=49.26 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=31.7
Q ss_pred CCCCCcceeeeeeecCCCCCceEEEEEeccccccHHHHHHHHHHhh
Q 043679 22 MPQSQPLWEVHIVKYPTSNAAGSVIFKLHHALGDGFSLMGALLSCL 67 (130)
Q Consensus 22 ld~~rPlWe~~vl~~~~~~~~~a~v~k~HHal~DG~sl~~ll~~~~ 67 (130)
++...|++++.++.+ + ++..+++.+||+++||.|+..++..+.
T Consensus 93 l~~~~~l~~~~~~~~--~-~~~~l~l~~hH~i~DG~S~~~ll~el~ 135 (416)
T PRK09294 93 LDQGVSLLALDVVPD--D-GGARVTLYIHHSIADAHHSASLLDELW 135 (416)
T ss_pred CCCCCceEEEEEEEc--C-CCEEEEEEeccEeEccccHHHHHHHHH
Confidence 344456899887753 2 367899999999999999976665443
No 9
>PRK12467 peptide synthase; Provisional
Probab=95.94 E-value=0.018 Score=60.67 Aligned_cols=58 Identities=21% Similarity=0.379 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHhcCCCCCCC-cceeeeeeecCCCCCceEEEEEeccccccHHHHHHHHHH
Q 043679 6 YDKCLQDYLSKLSAEEMPQSQ-PLWEVHIVKYPTSNAAGSVIFKLHHALGDGFSLMGALLS 65 (130)
Q Consensus 6 ~d~~L~~~vs~l~~~pld~~r-PlWe~~vl~~~~~~~~~a~v~k~HHal~DG~sl~~ll~~ 65 (130)
.++++++++.+...+|+|..+ |+|++.++..-. .+..+++.+||++.||.|+--++..
T Consensus 1204 ~~~~~~~~~~~~~~~~fdl~~~pl~R~~l~~~~~--~~~~l~l~~HHii~DG~S~~ill~e 1262 (3956)
T PRK12467 1204 DEAQLKVYVEAEARQPFDLEQGPLLRVGLLRLAA--DEHVLVLTLHHIVSDGWSMQVLVDE 1262 (3956)
T ss_pred hHHHHHHHHHHHhhCCCCCCCCcceeEEEEEECC--CeEEEEEecchhhhhHhHHHHHHHH
Confidence 356788999999999999875 999999997533 2578999999999999998655443
No 10
>PRK05691 peptide synthase; Validated
Probab=95.31 E-value=0.049 Score=57.87 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCCCCCCC-cceeeeeeecCCCCCceEEEEEeccccccHHHHHHHHH
Q 043679 7 DKCLQDYLSKLSAEEMPQSQ-PLWEVHIVKYPTSNAAGSVIFKLHHALGDGFSLMGALL 64 (130)
Q Consensus 7 d~~L~~~vs~l~~~pld~~r-PlWe~~vl~~~~~~~~~a~v~k~HHal~DG~sl~~ll~ 64 (130)
++.+++++.+...+|+|.++ |++++.++..- +.+..+++.+||++.||.|+--++.
T Consensus 1819 ~~~~~~~~~~~~~~~fdl~~~pl~r~~l~~~~--~~~~~l~~~~HHii~DG~S~~ll~~ 1875 (4334)
T PRK05691 1819 QQRLQQLADSEAHQPFDLERGPLLRACLVKAA--EREHYFVLTLHHIVTEGWAMDIFAR 1875 (4334)
T ss_pred HHHHHHHHHHHHhcCCCCCCCceeEEEEEEeC--CCcEEEEEecchhhhhhhhHHHHHH
Confidence 45577888888889999865 99999999753 2367899999999999999865543
No 11
>COG4908 Uncharacterized protein containing a NRPS condensation (elongation) domain [General function prediction only]
Probab=95.30 E-value=0.034 Score=48.40 Aligned_cols=54 Identities=20% Similarity=0.386 Sum_probs=41.7
Q ss_pred HHHHHHHhcCCCC-CC-CcceeeeeeecCCCCCceEEEEEeccccccHHHHHHHHHHhh
Q 043679 11 QDYLSKLSAEEMP-QS-QPLWEVHIVKYPTSNAAGSVIFKLHHALGDGFSLMGALLSCL 67 (130)
Q Consensus 11 ~~~vs~l~~~pld-~~-rPlWe~~vl~~~~~~~~~a~v~k~HHal~DG~sl~~ll~~~~ 67 (130)
|.-++++..++++ .. -|.-.+.++....++ .+++.+||+++||.|..+.+..+.
T Consensus 95 E~~fs~Fi~~k~~~t~~~PqI~v~~~r~~~~d---~L~i~lhH~~~DgrG~leyL~ll~ 150 (439)
T COG4908 95 EVAFSRFIVRKLNITKESPQIKVFVVRQTVGD---TLVINLHHAVCDGRGFLEYLYLLA 150 (439)
T ss_pred hHHHHHHHhcccccccCCCeEEEeeehhccCc---EEEEEechhhhcchhHHHHHHHHH
Confidence 4445888888888 33 688777777776554 699999999999999988776543
No 12
>PRK05691 peptide synthase; Validated
Probab=95.30 E-value=0.05 Score=57.82 Aligned_cols=57 Identities=21% Similarity=0.324 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcCCCCCCC-cceeeeeeecCCCCCceEEEEEeccccccHHHHHHHHHH
Q 043679 7 DKCLQDYLSKLSAEEMPQSQ-PLWEVHIVKYPTSNAAGSVIFKLHHALGDGFSLMGALLS 65 (130)
Q Consensus 7 d~~L~~~vs~l~~~pld~~r-PlWe~~vl~~~~~~~~~a~v~k~HHal~DG~sl~~ll~~ 65 (130)
++.++++..+...+|+|..+ |+++++++.... .+..+++.+||++.||.|+--++..
T Consensus 766 ~~~~~~~~~~~~~~~fdl~~~pl~R~~l~~~~~--~~~~l~l~~HHii~DG~S~~ll~~e 823 (4334)
T PRK05691 766 EARAAQIREEEARQPFDLEKGPLLRVTLVRLDD--EEHQLLVTLHHIVADGWSLNILLDE 823 (4334)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCceEEEEEEEcC--CeEEEEEeeCceeeccchHHHHHHH
Confidence 45577788888999999875 999999997532 3688999999999999998655443
No 13
>PRK12316 peptide synthase; Provisional
Probab=94.86 E-value=0.081 Score=57.13 Aligned_cols=57 Identities=21% Similarity=0.370 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcCCCCCC-CcceeeeeeecCCCCCceEEEEEeccccccHHHHHHHHHH
Q 043679 7 DKCLQDYLSKLSAEEMPQS-QPLWEVHIVKYPTSNAAGSVIFKLHHALGDGFSLMGALLS 65 (130)
Q Consensus 7 d~~L~~~vs~l~~~pld~~-rPlWe~~vl~~~~~~~~~a~v~k~HHal~DG~sl~~ll~~ 65 (130)
++.+.+.+.+...+|+|.. -|++++.++..-. ++..+++.+||.+.||.|+.-++..
T Consensus 140 ~~~~~~~~~~~~~~pfdl~~~pl~r~~l~~~~~--~~~~l~l~~HHii~Dg~S~~~l~~e 197 (5163)
T PRK12316 140 EARLRDEAQRESLQPFDLCEGPLLRVRLLRLGE--EEHVLLLTLHHIVSDGWSMNVLIEE 197 (5163)
T ss_pred HHHHHHHHHHhhcCCCCCCCCCceEEEEEEECC--CcEEEEEcccceeechhHHHHHHHH
Confidence 3456667777779999975 5999999997532 3678999999999999999655443
No 14
>PLN00140 alcohol acetyltransferase family protein; Provisional
Probab=93.39 E-value=0.14 Score=43.86 Aligned_cols=44 Identities=9% Similarity=-0.015 Sum_probs=31.0
Q ss_pred CcceeeeeeecCCCCCceEEEEEeccccccHHHHHHHHH---HhhCCCC
Q 043679 26 QPLWEVHIVKYPTSNAAGSVIFKLHHALGDGFSLMGALL---SCLQRAD 71 (130)
Q Consensus 26 rPlWe~~vl~~~~~~~~~a~v~k~HHal~DG~sl~~ll~---~~~~~~~ 71 (130)
.|+-.+.+=. ...| +.++-+.+||+++||.|+..++. ++++...
T Consensus 133 ~Pll~vQvT~-F~cG-G~~lG~~~~H~v~Dg~s~~~Fl~~WA~~~rg~~ 179 (444)
T PLN00140 133 IPQVAIQVNT-FDCG-GIALGLCFSHKIIDAATASAFLDSWAANTRGHY 179 (444)
T ss_pred CceEEEEEEE-eccC-cEEEEeeeceEcccHHHHHHHHHHHHHHhcCCC
Confidence 5665554333 3333 69999999999999999987765 4555443
No 15
>PLN02663 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase
Probab=92.27 E-value=0.25 Score=41.85 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=30.3
Q ss_pred CCcceeeeeeecCCCCCceEEEEEeccccccHHHHHHHHHH
Q 043679 25 SQPLWEVHIVKYPTSNAAGSVIFKLHHALGDGFSLMGALLS 65 (130)
Q Consensus 25 ~rPlWe~~vl~~~~~~~~~a~v~k~HHal~DG~sl~~ll~~ 65 (130)
+.|+..+++-... .+ +.++-+.+||+++||.|..+++.+
T Consensus 129 ~~P~l~vQvt~F~-cG-G~~lg~~~~H~v~Dg~g~~~fl~a 167 (431)
T PLN02663 129 SYPLLVLQVTHFK-CG-GVSLGVGMQHHAADGFSGLHFINT 167 (431)
T ss_pred cCceEEEEEEEec-cC-CEEEEEEecccccchHHHHHHHHH
Confidence 4688877765443 33 699999999999999999877663
No 16
>PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes. These include anthranilate N-hydroxycinnamoyl/benzoyltransferase that catalyzes the first committed reaction of phytoalexin biosynthesis []. Deacetylvindoline 4-O-acetyltransferase (2.3.1.107 from EC) catalyzes the last step in vindoline biosynthesis is also a member of this family []. The motif HXXXD is probably part of the active site. The family also includes trichothecene 3-O-acetyltransferase.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 2BGH_B 2E1U_B 2E1T_A 2E1V_A 2XR7_A 3B30_A 2RKT_A 3B2S_A 2RKV_A 2ZBA_C ....
Probab=91.60 E-value=0.22 Score=41.52 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=26.0
Q ss_pred CcceeeeeeecCCCCCceEEEEEeccccccHHHHHHHHH
Q 043679 26 QPLWEVHIVKYPTSNAAGSVIFKLHHALGDGFSLMGALL 64 (130)
Q Consensus 26 rPlWe~~vl~~~~~~~~~a~v~k~HHal~DG~sl~~ll~ 64 (130)
.|+=.+.+-.. .++ +.++-+.+||+++||.|+..++-
T Consensus 132 ~Pll~vQvt~f-~~G-G~~lg~~~~H~v~Dg~~~~~fl~ 168 (432)
T PF02458_consen 132 APLLAVQVTRF-KCG-GLALGVSFHHAVADGTGFSQFLK 168 (432)
T ss_dssp EBSEEEEEEEE-TTT-EEEEEEEEETTT--HHHHHHHHH
T ss_pred cceeEeeeeee-ccc-ceeeeeeceeccCcccchhHHHH
Confidence 56666664333 333 69999999999999999977765
No 17
>PLN03157 spermidine hydroxycinnamoyl transferase; Provisional
Probab=90.34 E-value=0.57 Score=39.97 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=29.8
Q ss_pred CcceeeeeeecCCCCCceEEEEEeccccccHHHHHHHHH---HhhCC
Q 043679 26 QPLWEVHIVKYPTSNAAGSVIFKLHHALGDGFSLMGALL---SCLQR 69 (130)
Q Consensus 26 rPlWe~~vl~~~~~~~~~a~v~k~HHal~DG~sl~~ll~---~~~~~ 69 (130)
.|+=.+.+-... .+ +.++-+.+||+++||.|+..++- ++++.
T Consensus 131 ~Pll~vQvT~F~-cG-G~~lg~~~~H~v~Dg~~~~~fl~aWA~~~rg 175 (447)
T PLN03157 131 LPLLLVQLTKFS-CG-GISLGLGISHAVADGQSALHFISEWARIARG 175 (447)
T ss_pred CceEEEEEEEec-CC-CEEEEEEeeccccchHhHHHHHHHHHHHhcC
Confidence 566555543333 33 69999999999999999987765 45543
No 18
>PLN02481 Omega-hydroxypalmitate O-feruloyl transferase
Probab=90.01 E-value=0.39 Score=40.90 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=27.1
Q ss_pred CcceeeeeeecCCCCCceEEEEEeccccccHHHHHHHHH
Q 043679 26 QPLWEVHIVKYPTSNAAGSVIFKLHHALGDGFSLMGALL 64 (130)
Q Consensus 26 rPlWe~~vl~~~~~~~~~a~v~k~HHal~DG~sl~~ll~ 64 (130)
.|+=-+.+-... .| +.++-+.+||+++||.|+..++.
T Consensus 143 ~Pll~vQvT~F~-~G-G~~lg~~~~H~v~Dg~g~~~fl~ 179 (436)
T PLN02481 143 IPPLTAQVTRFK-CG-GFVLGLCMNHCMFDGIGAMEFVN 179 (436)
T ss_pred cceeeeccceEe-cC-cEEEEEEeccccccHHHHHHHHH
Confidence 465555443333 33 69999999999999999977766
No 19
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=77.69 E-value=2.4 Score=33.27 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=16.7
Q ss_pred eEEEEEeccccccHHHHHHHHHH
Q 043679 43 GSVIFKLHHALGDGFSLMGALLS 65 (130)
Q Consensus 43 ~a~v~k~HHal~DG~sl~~ll~~ 65 (130)
--+-+.+|||++||.=+-+++..
T Consensus 182 mPvsiqvhHa~~DG~Hv~~F~~~ 204 (206)
T PF00302_consen 182 MPVSIQVHHALVDGYHVGQFFEE 204 (206)
T ss_dssp EEEEEEEETTT--HHHHHHHHHH
T ss_pred EEEEEEEecccccHHHHHHHHHH
Confidence 36889999999999987766654
No 20
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=68.63 E-value=5 Score=31.93 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=18.7
Q ss_pred eEEEEEeccccccHHHHHHHHHHh
Q 043679 43 GSVIFKLHHALGDGFSLMGALLSC 66 (130)
Q Consensus 43 ~a~v~k~HHal~DG~sl~~ll~~~ 66 (130)
--+-+.+|||++||.=+-+++..+
T Consensus 185 mPvSvqvHHa~~DG~Hv~~F~~~l 208 (219)
T PRK13757 185 MPLAIQVHHAVCDGFHVGRMLNEL 208 (219)
T ss_pred EEEEEEEehhccchHHHHHHHHHH
Confidence 368899999999999876655443
No 21
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=54.26 E-value=15 Score=29.60 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=18.4
Q ss_pred EEEEEeccccccHHHHHHHHHHh
Q 043679 44 SVIFKLHHALGDGFSLMGALLSC 66 (130)
Q Consensus 44 a~v~k~HHal~DG~sl~~ll~~~ 66 (130)
-+.+++|||.+||.=+-+++..+
T Consensus 185 Plavq~hHA~vDG~Hi~~l~~~l 207 (219)
T COG4845 185 PLAVQAHHANVDGFHIGQLFDQL 207 (219)
T ss_pred eEEEEecccccchhhHHHHHHHH
Confidence 47899999999999886665543
No 22
>cd02135 Arsenite_oxidase Nitroreductase-like family which includes NADH oxidase and arsenite oxidiase. NADH oxidase catalyses the oxidation of NAD(P)H and accepts a wide broad range of compounds as electron acceptors, such as nitrocompound. Arsenite oxidase in a beta-proteobacterial strain is able to oxidize arsenite to arsenate.
Probab=47.23 E-value=32 Score=24.35 Aligned_cols=31 Identities=10% Similarity=0.133 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHhcCCCCCCCcceeeeeeec
Q 043679 6 YDKCLQDYLSKLSAEEMPQSQPLWEVHIVKY 36 (130)
Q Consensus 6 ~d~~L~~~vs~l~~~pld~~rPlWe~~vl~~ 36 (130)
+++.+++++......|-..++-+|++.++++
T Consensus 19 ~~e~l~~il~aA~~APs~~n~Qpw~f~vv~~ 49 (160)
T cd02135 19 DREQLEQILEAAARAPDHGKLEPWRFIVIRG 49 (160)
T ss_pred CHHHHHHHHHHHHhCCCcCCccCeEEEEEec
Confidence 5788999999999999999999999999986
No 23
>PRK10828 putative oxidoreductase; Provisional
Probab=42.12 E-value=39 Score=25.24 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHhcCCCCCCCcceeeeeeec
Q 043679 6 YDKCLQDYLSKLSAEEMPQSQPLWEVHIVKY 36 (130)
Q Consensus 6 ~d~~L~~~vs~l~~~pld~~rPlWe~~vl~~ 36 (130)
+++.+++++..-...|-..++-+|++.+|++
T Consensus 22 ~~e~i~~ileaA~~APS~~N~Qpw~fvvv~~ 52 (183)
T PRK10828 22 TGEQLQNILRAGMRAPDHGSLQPWRFFVIEG 52 (183)
T ss_pred CHHHHHHHHHHHHhCcCcCCccceEEEEEcc
Confidence 5788999999999999999999999999986
No 24
>TIGR03553 F420_FbiB_CTERM F420 biosynthesis protein FbiB, C-terminal domain. Coenzyme F420 differs between the Archaea and the Actinobacteria, where the numbers of glutamate residues attached are 2 (Archaea) or 5-6 (Mycobacterium). The enzyme in the Archaea is homologous to the N-terminal domain of FbiB from Mycobacterium bovis, and is responsible for glutamate ligation. Therefore it seems likely that the C-terminal domain of FbiB, modeled by this alignment, is involved in additional glutamate ligation.
Probab=40.40 E-value=47 Score=24.66 Aligned_cols=33 Identities=6% Similarity=-0.012 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCcceeeeeeecC
Q 043679 5 FYDKCLQDYLSKLSAEEMPQSQPLWEVHIVKYP 37 (130)
Q Consensus 5 ~~d~~L~~~vs~l~~~pld~~rPlWe~~vl~~~ 37 (130)
-+++.+++++..-...|-..+.-+|++.++++.
T Consensus 17 V~~e~l~~il~aA~~APS~~n~Qpw~fvvv~~~ 49 (194)
T TIGR03553 17 VDPDAVRAAVAAALTAPAPHHTRPVRFVWVEDA 49 (194)
T ss_pred CCHHHHHHHHHHHHhCCCCCCCCCeEEEEEeCH
Confidence 368889999999999999999999999999764
No 25
>PRK05365 malonic semialdehyde reductase; Provisional
Probab=38.42 E-value=52 Score=24.68 Aligned_cols=33 Identities=9% Similarity=0.022 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCcceeeeeeecC
Q 043679 5 FYDKCLQDYLSKLSAEEMPQSQPLWEVHIVKYP 37 (130)
Q Consensus 5 ~~d~~L~~~vs~l~~~pld~~rPlWe~~vl~~~ 37 (130)
-+++.|+++++.-...|=-.+.-+|++.+|++.
T Consensus 27 I~~e~l~~ileaa~~APS~~N~QPw~fvvv~~~ 59 (195)
T PRK05365 27 VSDEQLRELYDLVKWGPTSANCSPARFVFVRSA 59 (195)
T ss_pred CCHHHHHHHHHHHHhCCCcCCCCCeEEEEEeCH
Confidence 357889999999999999999999999999763
No 26
>cd02145 BluB Subfamily of the nitroreductase family that includes BluB protein in Rhodobacter capsulatus is involved in the conversion of cobinamide to cobalamin in Cobalamin (vitamin B12) biosynthesis. Nitroreductases typically reduce their substrates by using NAD(P)H as electron donor and often use FMN as a cofactor.
Probab=37.83 E-value=52 Score=24.59 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCcceeeeeeecC
Q 043679 5 FYDKCLQDYLSKLSAEEMPQSQPLWEVHIVKYP 37 (130)
Q Consensus 5 ~~d~~L~~~vs~l~~~pld~~rPlWe~~vl~~~ 37 (130)
-+++.+++++......|-..+.-+|+++|+++.
T Consensus 18 V~~e~i~~ileaA~~APS~~N~Qpw~fvVv~~~ 50 (196)
T cd02145 18 VPEEVLERLLAAAHHAPSVGLSQPWRFIRVRDP 50 (196)
T ss_pred CCHHHHHHHHHHHHhCCCcCCCCCeEEEEEcCH
Confidence 367889999999999999999999999999764
No 27
>cd02140 Nitroreductase_4 Nitroreductase-like family 4. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=36.57 E-value=60 Score=24.24 Aligned_cols=34 Identities=6% Similarity=-0.036 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHH-hcCCCCCCCcceeeeeeecCC
Q 043679 5 FYDKCLQDYLSKL-SAEEMPQSQPLWEVHIVKYPT 38 (130)
Q Consensus 5 ~~d~~L~~~vs~l-~~~pld~~rPlWe~~vl~~~~ 38 (130)
-+++.+++.+..- ...|--.+.-+|+++||.+..
T Consensus 20 V~~e~l~~ileaA~~~APS~~N~QPW~f~Vv~~~~ 54 (192)
T cd02140 20 VSDDEIEEIVKEAVKHSPSSFNSQSSRAVILFGEE 54 (192)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEChH
Confidence 3578889998866 578888999999999999853
No 28
>cd02144 iodotyrosine_dehalogenase Iodotyrosine dehalogenase catalyzes the removal of iodine from the 3, 5 positions of L-tyosine in thyroid, liver and kidney, using NADPH as electron donor. This enzyme is a homolog of the nitroreductase family. These enzymes are usually homodimers.
Probab=36.52 E-value=56 Score=23.93 Aligned_cols=33 Identities=9% Similarity=0.253 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCcceeeeeeecC
Q 043679 5 FYDKCLQDYLSKLSAEEMPQSQPLWEVHIVKYP 37 (130)
Q Consensus 5 ~~d~~L~~~vs~l~~~pld~~rPlWe~~vl~~~ 37 (130)
-+++.|++++.-....|--.++-+|+++++.+.
T Consensus 19 v~~e~l~~il~aa~~APS~~n~Qpw~~vvv~~~ 51 (193)
T cd02144 19 VPREVIENCIRTAGTAPSGANTQPWTFVVVSDP 51 (193)
T ss_pred CCHHHHHHHHHHHHhCCCcCCCCCeEEEEeCCH
Confidence 368889999999999999999999999999764
No 29
>cd02151 NADPH_oxidoreductase_2 NAD(P)H:flavin oxidoreductase-like family 2. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=35.46 E-value=62 Score=23.31 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHhcCCCCCCCcceeeeeeec
Q 043679 6 YDKCLQDYLSKLSAEEMPQSQPLWEVHIVKY 36 (130)
Q Consensus 6 ~d~~L~~~vs~l~~~pld~~rPlWe~~vl~~ 36 (130)
+++.+++++......|-..++-+|++.++.+
T Consensus 20 ~~e~l~~il~aa~~aPs~~n~Qp~~f~vv~~ 50 (162)
T cd02151 20 EKEKVDALLKAALRAPSSRNRRPWEFIVVTD 50 (162)
T ss_pred CHHHHHHHHHHHHhCcCCCCCCCeEEEEECC
Confidence 5778999999888899999999999999965
No 30
>cd02148 Nitroreductase_5 Nitroreductase-like family 5. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=33.88 E-value=69 Score=23.75 Aligned_cols=33 Identities=9% Similarity=0.003 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCcceeeeeeecC
Q 043679 5 FYDKCLQDYLSKLSAEEMPQSQPLWEVHIVKYP 37 (130)
Q Consensus 5 ~~d~~L~~~vs~l~~~pld~~rPlWe~~vl~~~ 37 (130)
-+++.|+++++.....|--.+.-+|++.+|++.
T Consensus 20 I~~e~l~~ileaa~~APS~~N~Qpw~fvvV~~~ 52 (185)
T cd02148 20 VSDEQLRAIYDLVKWGPTAANSQPARFVFVRSA 52 (185)
T ss_pred CCHHHHHHHHHHHHhCCCCCCCCCeEEEEEECH
Confidence 358899999999999999999999999999863
No 31
>cd02062 Nitro_FMN_reductase Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer, utilizing FMN or FAD as cofactor. They are often found to be homodimers. Enzymes of this family are described as NAD(P)H:FMN oxidoreductases, oxygen-insensitive nitroreductase, flavin reductase P, dihydropteridine reductase, NADH oxidase or NADH dehydrogenase.
Probab=32.99 E-value=75 Score=21.19 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHhcCCCCCCCcceeeeee
Q 043679 6 YDKCLQDYLSKLSAEEMPQSQPLWEVHIV 34 (130)
Q Consensus 6 ~d~~L~~~vs~l~~~pld~~rPlWe~~vl 34 (130)
+++.+++++......|-..++-+|+++++
T Consensus 16 ~~~~l~~l~~~~~~aPs~~n~qp~~~~~v 44 (122)
T cd02062 16 PEEVLEKILEAARYAPSGGNLQPWRFVVV 44 (122)
T ss_pred CHHHHHHHHHHHHhCCCcCCCCCEEEEEE
Confidence 57788888888888899999999999999
No 32
>cd02136 Nitroreductase Nitroreductase family. Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=32.34 E-value=67 Score=23.30 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHhcCCCCCCCcceeeeeeec
Q 043679 6 YDKCLQDYLSKLSAEEMPQSQPLWEVHIVKY 36 (130)
Q Consensus 6 ~d~~L~~~vs~l~~~pld~~rPlWe~~vl~~ 36 (130)
++++|++++......|--.++-+|++.++++
T Consensus 20 ~~e~l~~il~~a~~aPs~~n~q~~~f~vv~~ 50 (178)
T cd02136 20 PRETIEEILAAAQRAPSGCNTQPWQVYVVTG 50 (178)
T ss_pred CHHHHHHHHHHHHhCccccCCCCEEEEEECc
Confidence 5778999998888889999999999999986
No 33
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=29.31 E-value=69 Score=23.04 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCcceeee
Q 043679 4 QFYDKCLQDYLSKLSAEEMPQSQPLWEVH 32 (130)
Q Consensus 4 ~~~d~~L~~~vs~l~~~pld~~rPlWe~~ 32 (130)
++--++|+.++..+.+ -||++.|+|.-+
T Consensus 37 ~Eqi~kLe~~vddl~~-sldPstp~lnS~ 64 (108)
T COG4062 37 EEQIKKLETLVDDLEN-SLDPSTPPLNSF 64 (108)
T ss_pred HHHHHHHHHHHHHHHh-ccCCCCCCcccC
Confidence 4446778888877764 599999999753
No 34
>TIGR02476 BluB cob(II)yrinic acid a,c-diamide reductase. The BluB protein is related to the nitroreductase family (pfam0881), and is found to substitute for the FldA cobalt reductase in aerobic species (by phylogenetic profiling). BluB is also found to be preceded by B12 promoter elements elements. The gene in R. capsulatus has been shown to be essential for cobalamin biosynthesis.
Probab=29.24 E-value=85 Score=23.71 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHhcCCCCCCCcceeeeeeecC
Q 043679 6 YDKCLQDYLSKLSAEEMPQSQPLWEVHIVKYP 37 (130)
Q Consensus 6 ~d~~L~~~vs~l~~~pld~~rPlWe~~vl~~~ 37 (130)
+++.|++++......|-..+.-+|++.+|.+.
T Consensus 28 ~~e~l~~il~aA~~APS~~n~Qpw~fvvv~~~ 59 (205)
T TIGR02476 28 PEAVLERLLDAAHHAPSVGFSQPWRFVRVESP 59 (205)
T ss_pred CHHHHHHHHHHHHhCCCcCCCCCeEEEEEcCH
Confidence 57889999999999999999999999999864
No 35
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=28.44 E-value=33 Score=29.18 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=25.8
Q ss_pred EEEEEeccccccHHHHHHHHHHhhCCCCCCCC
Q 043679 44 SVIFKLHHALGDGFSLMGALLSCLQRADDPSR 75 (130)
Q Consensus 44 a~v~k~HHal~DG~sl~~ll~~~~~~~~dp~~ 75 (130)
.+-+.+||.+.||.-+.+++..+.+.-.+|..
T Consensus 376 ~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ 407 (411)
T PRK11856 376 PLSLSFDHRVIDGADAARFLKALKELLENPAL 407 (411)
T ss_pred EEeEEeehhhcCcHHHHHHHHHHHHHHhCHHH
Confidence 47889999999999999998877655566653
No 36
>PRK11053 dihydropteridine reductase; Provisional
Probab=27.73 E-value=93 Score=23.68 Aligned_cols=33 Identities=6% Similarity=0.104 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCcceeeeeeecC
Q 043679 5 FYDKCLQDYLSKLSAEEMPQSQPLWEVHIVKYP 37 (130)
Q Consensus 5 ~~d~~L~~~vs~l~~~pld~~rPlWe~~vl~~~ 37 (130)
-+++.|++++......|--.+.-+|++.+|++.
T Consensus 22 v~~e~l~~ileaa~~APS~~N~Qpw~fvvV~~~ 54 (217)
T PRK11053 22 LPAEQIEQIKTLLRFSPSSVNSQPWHFIVASTE 54 (217)
T ss_pred CCHHHHHHHHHHHHhCCCcCCCcCeEEEEecCH
Confidence 468899999999999999999999999999873
No 37
>cd02139 Nitroreductase_3 Nitroreductase-like family 3. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=24.91 E-value=1.3e+02 Score=21.61 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCcceeeeeeec
Q 043679 5 FYDKCLQDYLSKLSAEEMPQSQPLWEVHIVKY 36 (130)
Q Consensus 5 ~~d~~L~~~vs~l~~~pld~~rPlWe~~vl~~ 36 (130)
-+++.|++++......|--.++-+|++.++++
T Consensus 19 v~~e~l~~ll~aa~~aPs~~n~qp~~~~vv~~ 50 (164)
T cd02139 19 VEEEKLERILEAARLAPSAKNLQPWRFIVVES 50 (164)
T ss_pred CCHHHHHHHHHHHhhCCCCCCCCCeEEEEEeC
Confidence 35778999998888888888889999999975
No 38
>PF00881 Nitroreductase: Nitroreductase family; InterPro: IPR000415 This entry represents a family of proteins consisting of nitroreductase enzymes and related oxidoreductases. Members of this family utilise FMN as a cofactor and are often found to be homodimers. Possible characteristics include Oxygen-insensitive NAD(P)H nitroreductase (FMN-dependent nitroreductase) (Dihydropteridine reductase) (1.6.99.7 from EC) and NADH dehydrogenase (1.6.99.3 from EC). A number of the proteins are described as oxidoreductases. They are primarily found in bacterial lineages though a number of eukaryotic homologs have been identified: Caenorhabditis elegans P34273 from SWISSPROT, Drosophila melanogaster (Fruit fly) Q8T3Q0 from SWISSPROT Q9VTE7 from SWISSPROT, Mus musculus (Mouse) Q9DCX8 from SWISSPROT and Homo sapiens (Human) O75989 from SWISSPROT. This protein is not found in photosynthetic eukaryotes. The sequences containing this entry in photosynthetic organisms are possible false positives. ; GO: 0016491 oxidoreductase activity; PDB: 1BKJ_A 2BKJ_B 3OF4_C 3E39_B 3GBH_B 2R01_A 1YWQ_A 2WZW_B 2WZV_B 2ISL_H ....
Probab=23.67 E-value=79 Score=21.87 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCcceeeeeee
Q 043679 5 FYDKCLQDYLSKLSAEEMPQSQPLWEVHIVK 35 (130)
Q Consensus 5 ~~d~~L~~~vs~l~~~pld~~rPlWe~~vl~ 35 (130)
-+++.|+++++.....|=..+..+|++++++
T Consensus 15 v~~~~l~~il~~a~~aPs~~~~~p~~~~vv~ 45 (165)
T PF00881_consen 15 VPDEDLEEILEAARWAPSSGNLQPWRFYVVN 45 (165)
T ss_dssp SEHHHHHHHHHHHHTS--GGGGGGEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhhhcccccchheeeec
Confidence 3578899999999888988999999999995
No 39
>cd02137 Nitroreductase_1 Nitroreductase-like family 1. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=23.57 E-value=1.3e+02 Score=21.16 Aligned_cols=31 Identities=13% Similarity=0.167 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHhcCCCCCCCcceeeeeeec
Q 043679 6 YDKCLQDYLSKLSAEEMPQSQPLWEVHIVKY 36 (130)
Q Consensus 6 ~d~~L~~~vs~l~~~pld~~rPlWe~~vl~~ 36 (130)
+++.+++++......|=-.++-+|++.++++
T Consensus 20 ~~e~l~~il~~a~~aPs~~n~qp~~~~vi~~ 50 (148)
T cd02137 20 PREELKEILELATLAPSSFNLQPWRFVVVRD 50 (148)
T ss_pred CHHHHHHHHHHHHHCcCcCCCCCeEEEEECC
Confidence 5778999998888888888899999999975
No 40
>cd02150 NADPH_oxidoreductase_1 NAD(P)H:flavin oxidoreductase-like family 1. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=23.44 E-value=1.4e+02 Score=21.53 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHhcCCCCCCCcceeeeeeecC
Q 043679 6 YDKCLQDYLSKLSAEEMPQSQPLWEVHIVKYP 37 (130)
Q Consensus 6 ~d~~L~~~vs~l~~~pld~~rPlWe~~vl~~~ 37 (130)
+++.|++++......|=-.++-+|+++++++.
T Consensus 19 ~~e~l~~il~~a~~aPs~~n~qp~~~~vv~~~ 50 (166)
T cd02150 19 SDELIEKILRAAMAAPSAGNQQPWRFVVVRDR 50 (166)
T ss_pred CHHHHHHHHHHHhhCCCCCCCCCeEEEEEeCH
Confidence 57788888888888887788999999999643
No 41
>cd02149 NfsB_like_nitroreductase NAD(P)H:FMN oxidoreductase family. This domain catalyzes the reduction of flavin, nitrocompound, quinones and azo compounds using NADH or NADPH as an electron donor. The enzyme is a homodimer, and each monomer binds a FMN as co-factor. This family includes FRase I in Vibrio fischeri, wihich reduces FMN into FMNH2 as part of the bioluminescent reaction. The family also includes oxygen-insensitive nitroreductases that use NADH or NADPH as an electron donor in the ping pong bi bi mechanism. This type of nitroreductase can be used in cancer chemotherapy to activate a range of prodrugs.
Probab=21.95 E-value=1.4e+02 Score=21.30 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHhcCCCCCCCcceeeeeeecC
Q 043679 6 YDKCLQDYLSKLSAEEMPQSQPLWEVHIVKYP 37 (130)
Q Consensus 6 ~d~~L~~~vs~l~~~pld~~rPlWe~~vl~~~ 37 (130)
+++.+++++......|--.++-+|++.++++.
T Consensus 22 ~~e~l~~il~~a~~aPs~~n~qp~~~~vv~~~ 53 (157)
T cd02149 22 SDEDLEEILEALRLSPSSFGLQPWKFLVVENE 53 (157)
T ss_pred CHHHHHHHHHHHHHCcCcCCccCeEEEEeCCH
Confidence 57789999988888898889999999999753
No 42
>cd03370 NADH_oxidase NADPH_oxidase. Nitroreductase family containing NADH oxidase and other, uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=21.47 E-value=1.5e+02 Score=21.15 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCcceeeeeeec
Q 043679 5 FYDKCLQDYLSKLSAEEMPQSQPLWEVHIVKY 36 (130)
Q Consensus 5 ~~d~~L~~~vs~l~~~pld~~rPlWe~~vl~~ 36 (130)
-+++++++++......|--.++-+|++.++++
T Consensus 19 i~~e~l~~il~~a~~aPs~~n~qp~~~~vv~~ 50 (156)
T cd03370 19 IPEDLLRRLLEAALRAPSAFNLQPWRIVVVQD 50 (156)
T ss_pred CCHHHHHHHHHHHHHCcCcCCCCCeEEEEEcC
Confidence 35778999999888889888899999999965
No 43
>cd02146 NfsA_FRP This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.
Probab=20.22 E-value=1.5e+02 Score=22.93 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHhcCCCCCCCcceeeeeeecC
Q 043679 6 YDKCLQDYLSKLSAEEMPQSQPLWEVHIVKYP 37 (130)
Q Consensus 6 ~d~~L~~~vs~l~~~pld~~rPlWe~~vl~~~ 37 (130)
+++.+++++......|-..++-+|++.++++.
T Consensus 20 ~~e~l~~ileaa~~APS~~N~Qpw~fvVv~~~ 51 (229)
T cd02146 20 PDETLETLIAAAQSAPTSSNLQAYSVIVVTDP 51 (229)
T ss_pred CHHHHHHHHHHHHHcCCcccCCceEEEEEcCH
Confidence 57788999988888898888999999999763
No 44
>PF07428 Tri3: 15-O-acetyltransferase Tri3; InterPro: IPR009992 This family represents a conserved region approximately 400 residues long within 15-O-acetyltransferase (Tri3), which seems to be restricted to ascomycete fungi. In Fusarium sporotrichioides, this is required for acetylation of the C-15 hydroxyl group of trichothecenes in the biosynthesis of T-2 toxin [].; PDB: 3FP0_A 3FOT_A.
Probab=20.20 E-value=2.2e+02 Score=24.92 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=24.5
Q ss_pred eeeeeecCCCC-------CceEEEEEeccccccHHHHHHH---HHHhhCC
Q 043679 30 EVHIVKYPTSN-------AAGSVIFKLHHALGDGFSLMGA---LLSCLQR 69 (130)
Q Consensus 30 e~~vl~~~~~~-------~~~a~v~k~HHal~DG~sl~~l---l~~~~~~ 69 (130)
++.+|-+.+++ +.+-++|-.||-.-||+|.-.+ |++++.+
T Consensus 149 ~iflv~~v~~~~t~i~~~~~V~~vFhsnHL~wDGis~r~FvGDlfR~l~~ 198 (413)
T PF07428_consen 149 VIFLVSDVPTLDTPIPQDATVELVFHSNHLFWDGISCRKFVGDLFRLLGE 198 (413)
T ss_dssp EEEEEESSSSTTS---TT-EEEEEEEE-GGG--HHHHHHHHHHHHHHHCC
T ss_pred EEEEecCCCCCCcccCCCCEEEEEEecccceeccccchhhhHHHHHHHHh
Confidence 56666655433 2467999999999999998555 4455543
Done!