BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043680
(205 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9BRU9|UTP23_HUMAN rRNA-processing protein UTP23 homolog OS=Homo sapiens GN=UTP23 PE=1
SV=2
Length = 249
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 85/182 (46%), Gaps = 35/182 (19%)
Query: 23 LGQSHSEAVEAAYKVAIARCEHEK-LKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQE 81
LG+ A A K + C H K S CL+ ++ E NP H+FVATQD +L K+++
Sbjct: 72 LGKDLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMVEEGNPHHYFVATQDQNLSVKVKK 131
Query: 82 VPGVPLIFGLRNALLLEPPSSFQRKFVKTSEEARSCMTKSEFKKLKKSTKNILETKEIGD 141
PGVPL+F ++N ++L+ PS FVK E +
Sbjct: 132 KPGVPLMFIIQNTMVLDKPSPKTIAFVKAVESGQLV------------------------ 167
Query: 142 SSNKNEELENQKLEMQADKKTHYARKGMGVKDRPQFKRKRAKAPNPLSCKKKKNHENPST 201
S ++ E +++ K E K T +R+ KRK+ PNPLSC KKK + P T
Sbjct: 168 SVHEKESIKHLKEEQGLVKNTEQSRRK---------KRKKISGPNPLSCLKKKK-KAPDT 217
Query: 202 SS 203
S
Sbjct: 218 QS 219
>sp|Q9CX11|UTP23_MOUSE rRNA-processing protein UTP23 homolog OS=Mus musculus GN=Utp23 PE=2
SV=1
Length = 249
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 23 LGQSHSEAVEAAYKVAIARCEHEKL-KSADACLMEVIGEKNPEHFFVATQDVDLRKKLQE 81
LG+ A A K + C H K S CL+ ++ E NP H+FVATQD +L K++
Sbjct: 72 LGKELYGAKLIAQKCQVRNCPHFKSPVSGSECLLSMVDEGNPHHYFVATQDQNLSVKVKR 131
Query: 82 VPGVPLIFGLRNALLLEPPSSFQRKFVKTSEEAR--SCMTKSEFKKLKK 128
PG+PL+F ++N ++L+ PS FVK E + S K K+LK+
Sbjct: 132 TPGIPLMFIIQNTIVLDKPSPRTVAFVKAVEAGQLVSVHEKQSIKQLKE 180
>sp|Q08DU1|UTP23_BOVIN rRNA-processing protein UTP23 homolog OS=Bos taurus GN=UTP23 PE=2
SV=1
Length = 248
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 23 LGQSHSEAVEAAYKVAIARCEHEK-LKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQE 81
LG+ A A K + C H K S CL+ ++ + NP H+F+ATQD +L K+++
Sbjct: 72 LGKDLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMVEDGNPHHYFLATQDQNLSMKVKK 131
Query: 82 VPGVPLIFGLRNALLLEPPSSFQRKFVKTSEEAR--SCMTKSEFKKLK 127
PG+PL+F ++N ++L+ PS FVK E + S K ++LK
Sbjct: 132 KPGIPLMFIIQNTIVLDKPSPKTIAFVKAVESGQLVSVHEKQSIRQLK 179
>sp|Q12339|UTP23_YEAST rRNA-processing protein UTP23 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=UTP23 PE=1 SV=1
Length = 254
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 68/129 (52%), Gaps = 12/129 (9%)
Query: 30 AVEAAYKVAIARCEH--EKLKSADACLMEV--IGEKNPEHFFVATQDVDLRKKLQEVPGV 85
A+ A + RC H + KS C+ V I N + VA+QD+DLR+KL+ VPGV
Sbjct: 77 AINLAKQFERRRCNHSFKDPKSPAECIESVVNISGANKHRYVVASQDIDLRRKLRTVPGV 136
Query: 86 PLIFGLRNALLLEPPSSFQRKFVKTSEEARSCMTKSEFKKLKKSTKNILETKEIGDSSNK 145
PLI R+ +++EP S+ K K +EE + +K L + NI + +E GD S K
Sbjct: 137 PLIHLTRSVMVMEPLSTASAKASKITEEQKL------YKGL--NDPNIEKLQESGDGSGK 188
Query: 146 NEELENQKL 154
+ +KL
Sbjct: 189 ESITKKRKL 197
>sp|O74862|UTP23_SCHPO rRNA-processing protein utp23 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=utp23 PE=3 SV=1
Length = 260
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 83/183 (45%), Gaps = 27/183 (14%)
Query: 25 QSHSEAVEAAYKVAIA------RCEH-EKLKSADACLMEV--IGEKNPEHFFVATQDVDL 75
Q +S++ E ++ IA RC H ++ S C+ V I +N + VATQD +L
Sbjct: 68 QLYSKSDELKQEIRIAKSFERRRCGHIDEALSPSECIQSVVNINGRNKHRYVVATQDPEL 127
Query: 76 RKKLQEVPGVPLIFGLRNALLLEPPSSFQRKFVKTSEEARSCMTKSEFKKLKKSTKNILE 135
R+ L+ VPGVPLI+ R+ ++LEP S E + M+K E KL S K
Sbjct: 128 RQALRSVPGVPLIYMKRSVVILEPASRATLLEKHNKESVQMGMSKEE--KLLLSGKKRSA 185
Query: 136 TKEIGDSSNKNEELENQKLEMQADKKTHYARKGMGVKDRPQFKRKRAKAPNPLSCKKK-- 193
+ D + E + E A K KRK K PNPLS KK+
Sbjct: 186 NELAIDDQDTKESTDLAGTEDSAPKANK--------------KRKGPKGPNPLSIKKRSS 231
Query: 194 KNH 196
KNH
Sbjct: 232 KNH 234
>sp|Q5RFQ0|FCF1_PONAB rRNA-processing protein FCF1 homolog OS=Pongo abelii GN=FCF1 PE=2
SV=1
Length = 198
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 22 RLGQSHSEAVEAAYKVAIAR--CEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKL 79
+LGQ + A+ A R C H K AD CL++ + + + + VAT D DL++++
Sbjct: 112 KLGQKYRVALRIAKDPRFERLPCTH-KGTYADDCLVQRVTQH--KCYIVATVDRDLKRRI 168
Query: 80 QEVPGVPLIF 89
+++PGVP+++
Sbjct: 169 RKIPGVPIMY 178
>sp|Q9Y324|FCF1_HUMAN rRNA-processing protein FCF1 homolog OS=Homo sapiens GN=FCF1 PE=2
SV=1
Length = 198
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 22 RLGQSHSEAVEAAYKVAIAR--CEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKL 79
+LGQ + A+ A R C H K AD CL++ + + + + VAT D DL++++
Sbjct: 112 KLGQKYRVALRIAKDPRFERLPCTH-KGTYADDCLVQRVTQH--KCYIVATVDRDLKRRI 168
Query: 80 QEVPGVPLIF 89
+++PGVP+++
Sbjct: 169 RKIPGVPIMY 178
>sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog OS=Bos taurus GN=FCF1 PE=2
SV=1
Length = 198
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 22 RLGQSHSEAVEAAYKVAIAR--CEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKL 79
+LGQ + A+ A R C H K AD CL++ + + + + VAT D DL++++
Sbjct: 112 KLGQKYRVALRIAKDPRFERLPCTH-KGTYADDCLVQRVTQH--KCYIVATVDRDLKRRI 168
Query: 80 QEVPGVPLIF 89
+++PGVP+++
Sbjct: 169 RKIPGVPIMY 178
>sp|Q55GM5|FCF1_DICDI rRNA-processing protein FCF1 homolog OS=Dictyostelium discoideum
GN=fcf1 PE=3 SV=1
Length = 194
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 42 CEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQEVPGVPLIF 89
C H K AD C++ I F VAT D DLR++++++PGVP+++
Sbjct: 134 CSH-KGTYADDCIINRITMH--RMFIVATCDADLRRRIRKIPGVPIVY 178
>sp|Q9CTH6|FCF1_MOUSE rRNA-processing protein FCF1 homolog OS=Mus musculus GN=Fcf1 PE=2
SV=2
Length = 198
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 22 RLGQSHSEAVEAAYKVAIAR--CEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKL 79
+LGQ A+ A R C H K AD CL++ + + + + VAT D DL++++
Sbjct: 112 KLGQKFRVALRIAKDPRFDRLPCTH-KGTYADDCLVQRVTQH--KCYIVATVDRDLKRRI 168
Query: 80 QEVPGVPLIF 89
+++PGVP+++
Sbjct: 169 RKIPGVPIMY 178
>sp|Q05498|FCF1_YEAST rRNA-processing protein FCF1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=FCF1 PE=1 SV=1
Length = 189
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 20 LFRLGQSHSEAVEAAYKVAIAR--CEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRK 77
L +LG + A++ A I R C H K AD CL+ + + + + VAT D L++
Sbjct: 106 LEKLGPKYRIALKLARDPRIKRLSCSH-KGTYADDCLVHRVLQH--KCYIVATNDAGLKQ 162
Query: 78 KLQEVPGVPLIFGLRNALLLE 98
+++++PG+PL+ +A ++E
Sbjct: 163 RIRKIPGIPLMSVGGHAYVIE 183
>sp|O13610|FCF1_SCHPO rRNA-processing protein fcf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=fcf1 PE=3 SV=1
Length = 192
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 42 CEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQEVPGVPLI 88
C H K AD C+++ + + + + VAT D +L+++++++PG+P++
Sbjct: 132 CTH-KGTYADDCIVQRVMQH--KCYLVATNDKNLKQRIRKIPGIPIL 175
>sp|Q9QU30|CAPSD_TTVB1 Capsid protein OS=Torque teno mini virus 1 (isolate TLMV-CBD279)
GN=ORF1 PE=3 SV=1
Length = 662
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 17/93 (18%)
Query: 94 ALLLEPPSSFQRKFVKTSEEARSCMTKSEFKKLKK-----------STKNI-LETKEIGD 141
L +E P ++ ++ T +E RS +T K+LKK TK+I L+T+E D
Sbjct: 558 GLQIESPGKPKQYYLYTFDEKRSELTMPAAKRLKKDFTTPTFFTDFGTKDIPLKTQEETD 617
Query: 142 SSNKNEELENQ-----KLEMQADKKTHYARKGM 169
+++EE+E L+ Q + Y R+G+
Sbjct: 618 QISEDEEIETSLPKEDHLKQQLQRTRQYYREGI 650
>sp|P41511|TOP1_USTMA DNA topoisomerase 1 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=TOP1 PE=3 SV=2
Length = 1019
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 19 FLFRLGQSHSEAVEAAYKVAIARCEHEKLKSADACLMEVIG 59
F R G E Y V RCEH ++K D +E +G
Sbjct: 439 FSLRAGNEKGEDEAETYGVCSLRCEHAQIKMPDTIHLEFLG 479
>sp|A4WF39|NANR_ENT38 Transcriptional regulator NanR OS=Enterobacter sp. (strain 638)
GN=nanR PE=3 SV=1
Length = 260
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 6/101 (5%)
Query: 1 MPSPTLLLPLLSSSPPSLFLFRLGQSHSEAVEAAYKVAIAR-----CEHEKLKSADACLM 55
MPS ++ LS G +H E + ++ ++ R E+++S L
Sbjct: 94 MPSADTIIGELSGMAKDFLTQPGGITHFEQLRLFFESSLVRYAAEFATDEQVESLSKAL- 152
Query: 56 EVIGEKNPEHFFVATQDVDLRKKLQEVPGVPLIFGLRNALL 96
E+ + ++ DVD + L E+PG P+ + ALL
Sbjct: 153 EINSQSLSDNALFIRSDVDFHRVLAEIPGNPIFMAIHVALL 193
>sp|Q6BY77|END3_DEBHA Actin cytoskeleton-regulatory complex protein END3 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=END3 PE=3 SV=2
Length = 393
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 10/52 (19%)
Query: 111 SEEARSCMTKSEFKKLKKSTKNIL----------ETKEIGDSSNKNEELENQ 152
S+++ S M K E+++L K NIL +K++GD+ N E +ENQ
Sbjct: 315 SDDSESAMIKYEYEQLLKYKTNILSELESGSNHNNSKDLGDAKNDIELIENQ 366
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,809,732
Number of Sequences: 539616
Number of extensions: 2875620
Number of successful extensions: 9182
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 132
Number of HSP's that attempted gapping in prelim test: 9029
Number of HSP's gapped (non-prelim): 268
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)