Query 043680
Match_columns 205
No_of_seqs 152 out of 396
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 12:22:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043680.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043680hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o4w_A PIN (PILT N-terminus) d 99.0 1.1E-09 3.7E-14 86.2 6.9 80 8-95 53-140 (147)
2 3ix7_A Uncharacterized protein 97.9 2.6E-05 8.9E-10 61.5 7.3 79 9-92 32-124 (134)
3 3i8o_A KH domain-containing pr 96.7 0.0024 8.1E-08 50.8 5.6 81 10-94 32-134 (142)
4 2dok_A Telomerase-binding prot 96.4 0.0056 1.9E-07 49.6 6.3 83 8-91 38-177 (186)
5 2lcq_A Putative toxin VAPC6; P 84.8 0.96 3.3E-05 35.5 4.3 77 9-91 27-122 (165)
6 8tfv_A Protein (thanatin); bac 51.8 4.2 0.00014 21.6 0.5 10 84-93 5-14 (21)
7 2lqo_A Putative glutaredoxin R 48.7 27 0.00091 24.6 4.7 40 63-103 30-73 (92)
8 2yan_A Glutaredoxin-3; oxidore 44.0 24 0.00083 24.6 3.8 31 63-93 48-81 (105)
9 1wik_A Thioredoxin-like protei 42.4 25 0.00085 24.8 3.7 32 64-95 47-81 (109)
10 2pz0_A Glycerophosphoryl diest 42.4 1.1E+02 0.0037 24.8 8.1 83 11-93 72-175 (252)
11 3erw_A Sporulation thiol-disul 40.1 56 0.0019 22.7 5.4 86 6-94 37-125 (145)
12 2wci_A Glutaredoxin-4; redox-a 38.8 30 0.001 26.1 3.8 31 64-94 67-100 (135)
13 3qmx_A Glutaredoxin A, glutare 38.6 39 0.0013 23.6 4.2 31 64-94 43-77 (99)
14 2ct6_A SH3 domain-binding glut 34.9 31 0.001 24.7 3.2 30 65-94 42-82 (111)
15 3e61_A Putative transcriptiona 31.6 84 0.0029 24.7 5.7 41 52-94 55-96 (277)
16 2wem_A Glutaredoxin-related pr 31.5 59 0.002 23.8 4.3 32 64-95 53-87 (118)
17 3ha9_A Uncharacterized thiored 31.1 1.4E+02 0.0048 21.5 6.5 42 49-91 96-137 (165)
18 2dk4_A PRE-mRNA-splicing facto 30.8 6.2 0.00021 28.0 -1.2 27 65-92 22-48 (76)
19 2wul_A Glutaredoxin related pr 30.7 29 0.00098 25.9 2.5 32 64-95 53-87 (118)
20 1t1v_A SH3BGRL3, SH3 domain-bi 30.1 44 0.0015 22.7 3.2 30 65-94 36-70 (93)
21 3zyw_A Glutaredoxin-3; metal b 29.9 34 0.0012 24.6 2.7 31 64-94 48-81 (111)
22 1ego_A Glutaredoxin; electron 28.2 45 0.0015 21.5 2.9 21 73-93 46-67 (85)
23 3gx8_A Monothiol glutaredoxin- 28.0 44 0.0015 24.4 3.1 28 67-94 54-84 (121)
24 3ipz_A Monothiol glutaredoxin- 26.0 57 0.0019 23.1 3.3 31 64-94 50-83 (109)
25 3kke_A LACI family transcripti 25.6 1.3E+02 0.0045 24.1 5.9 54 37-93 46-103 (303)
26 2do5_A Splicing factor 3B subu 24.3 7.6 0.00026 25.6 -1.6 31 70-101 11-53 (58)
27 3no3_A Glycerophosphodiester p 23.6 2.8E+02 0.0096 22.2 7.6 82 12-93 63-161 (238)
28 3zy2_A Putative GDP-fucose pro 23.0 51 0.0017 29.6 3.0 41 50-91 267-311 (362)
29 3eyt_A Uncharacterized protein 22.3 2E+02 0.0068 20.3 5.8 84 5-91 30-124 (158)
30 3ctg_A Glutaredoxin-2; reduced 22.2 1.1E+02 0.0037 22.4 4.3 30 66-95 70-105 (129)
31 1wjk_A C330018D20RIK protein; 22.1 1.5E+02 0.0051 20.3 4.9 30 71-102 55-84 (100)
32 3jy6_A Transcriptional regulat 21.5 2.8E+02 0.0095 21.6 7.0 40 52-93 54-94 (276)
33 1ilo_A Conserved hypothetical 21.5 1.5E+02 0.0052 18.2 5.3 24 72-97 39-62 (77)
34 1u6t_A SH3 domain-binding glut 21.4 1.5E+02 0.0051 22.1 5.0 32 64-95 33-75 (121)
35 1vd6_A Glycerophosphoryl diest 21.1 3E+02 0.01 21.6 8.0 80 12-93 64-153 (224)
36 1o1z_A GDPD, glycerophosphodie 21.0 3.1E+02 0.011 21.8 7.3 78 11-93 73-154 (234)
37 3h5i_A Response regulator/sens 20.8 2E+02 0.0069 19.8 5.5 44 49-92 37-86 (140)
38 2o55_A Putative glycerophospho 20.6 3.3E+02 0.011 21.8 7.8 80 12-91 73-170 (258)
39 2zxj_A Transcriptional regulat 20.4 95 0.0033 22.8 3.7 27 75-101 84-112 (120)
40 2l5o_A Putative thioredoxin; s 20.2 2.3E+02 0.0078 19.8 6.8 81 6-91 31-113 (153)
No 1
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=98.96 E-value=1.1e-09 Score=86.20 Aligned_cols=80 Identities=18% Similarity=0.219 Sum_probs=67.0
Q ss_pred cceeccchHHHHHHhhcc--------chHHHHHHHhhcceeecCCCCCCCHHHHHHHHHhccCCccEEEEccCHHHHHHh
Q 043680 8 LPLLSSSPPSLFLFRLGQ--------SHSEAVEAAYKVAIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKL 79 (205)
Q Consensus 8 ~~l~tT~CVl~ELe~LG~--------~~~~Al~iaK~f~~~kC~H~~~~~a~~CI~~~v~~~N~~~yiVATQD~~Lr~~L 79 (205)
..++++.||+.||+.+.. ....++.++..++++.|+ . + + |.||.+++...+ ++|+|+|.+|++++
T Consensus 53 ~~~~I~~~vl~EL~~~~~~~~~~~~~~~~~~~~ll~~~~vv~~~-~-~-~-D~~Ila~A~~~~---~~LvT~D~~l~~~a 125 (147)
T 1o4w_A 53 SRFLITASVKRELEKLEMSLRGKEKVAARFALKLLEHFEVVETE-S-E-G-DPSLIEAAEKYG---CILITNDKELKRKA 125 (147)
T ss_dssp EEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHTTSEEECCS-S-C-S-HHHHHHHHHHHT---CEEECCCHHHHHHH
T ss_pred CCEEEcHHHHHHHHHHHhccCcchHHHHHHHHHHHhcCcEeeCC-C-C-c-hHHHHHHHHHhC---CEEEECCHHHHHHH
Confidence 578899999999999874 334567788888888887 2 3 6 999999997653 89999999999999
Q ss_pred hcCCCCcEEEecCceE
Q 043680 80 QEVPGVPLIFGLRNAL 95 (205)
Q Consensus 80 R~ipGVPliyi~~~~~ 95 (205)
+.. |||++|++++.+
T Consensus 126 ~~~-Gv~vi~~~~~~~ 140 (147)
T 1o4w_A 126 KQR-GIPVGYLKEDKR 140 (147)
T ss_dssp HHT-TCCEECCCCCCC
T ss_pred HHC-CCeEEEecCCcE
Confidence 998 999999998764
No 2
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=97.91 E-value=2.6e-05 Score=61.53 Aligned_cols=79 Identities=16% Similarity=0.088 Sum_probs=60.4
Q ss_pred ceeccchHHHHHHhhcc------c--hHHHHHHHhhc------ceeecCCCCCCCHHHHHHHHHhccCCccEEEEccCHH
Q 043680 9 PLLSSSPPSLFLFRLGQ------S--HSEAVEAAYKV------AIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVD 74 (205)
Q Consensus 9 ~l~tT~CVl~ELe~LG~------~--~~~Al~iaK~f------~~~kC~H~~~~~a~~CI~~~v~~~N~~~yiVATQD~~ 74 (205)
+++++.+|+.||+.+.. . -+.++++.+++ +... .-.+...+|+.|..++...+ .+|.|+|..
T Consensus 32 ~liIP~~Vl~ELq~lA~s~d~~~r~rGr~gL~iL~~L~~~~~vei~~-~~~~~~~vD~~ll~lA~~~~---~~lvTnD~~ 107 (134)
T 3ix7_A 32 PLWVPHFVLKELQHFADSQDPLRRAKGRRGLETLERLREAAPLEVLE-TTPKGESVDEKLLFLARDLE---AALVTNDHA 107 (134)
T ss_dssp CEEEEHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHSCEEEEC-CCCSCSSHHHHHHHHHHHTT---CEEEESCHH
T ss_pred ceecHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhcCCEEEeC-CCCCcccHHHHHHHHHHHhC---CEEEeCCHH
Confidence 68999999999999973 1 23377777764 2322 22234579999999998763 688899999
Q ss_pred HHHHhhcCCCCcEEEecC
Q 043680 75 LRKKLQEVPGVPLIFGLR 92 (205)
Q Consensus 75 Lr~~LR~ipGVPliyi~~ 92 (205)
|++.++.. |||++|++.
T Consensus 108 L~kvA~~~-GI~Vl~l~~ 124 (134)
T 3ix7_A 108 LLQMARIY-GVKALSIQA 124 (134)
T ss_dssp HHHHHHHT-TCCEEEHHH
T ss_pred HHHHHHHC-CCeEEehHH
Confidence 99999985 999999874
No 3
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=96.69 E-value=0.0024 Score=50.78 Aligned_cols=81 Identities=16% Similarity=0.050 Sum_probs=59.7
Q ss_pred eeccchHHHHHHhhccchH----HHHHHHhhccee---------ecCC---------CCCCCHHHHHHHHHhccCCccEE
Q 043680 10 LLSSSPPSLFLFRLGQSHS----EAVEAAYKVAIA---------RCEH---------EKLKSADACLMEVIGEKNPEHFF 67 (205)
Q Consensus 10 l~tT~CVl~ELe~LG~~~~----~Al~iaK~f~~~---------kC~H---------~~~~~a~~CI~~~v~~~N~~~yi 67 (205)
++++..|+.||+.+...-+ .++++.+++... -.+. .+.-..|.-|..++...+ .+
T Consensus 32 iiIP~~Vl~EL~~~a~~~r~~GrrGLe~L~~L~~~~~~~~i~vei~~~r~~~~~i~~~~~~~vD~~l~~lA~~~~---a~ 108 (142)
T 3i8o_A 32 IIIPEAVVSELEYQANMGREIGYKGIEELRKLIEKASEHNIKVEYYGERPTREEIFLAKSGEIDAMIRKVAKETN---SI 108 (142)
T ss_dssp EEEEHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTCCEEEESCCCCHHHHHSCCSSSHHHHHHHHHHHTT---CE
T ss_pred EEehHHHHHHHHHHHHccchhhHHHHHHHHHHHHHhhccCceEEEecccCchhhhccccCCcHHHHHHHHHHHhC---CE
Confidence 8888999999999976432 277777765421 1111 122468888999987663 57
Q ss_pred EEccCHHHHHHhhcCCCCcEEEecCce
Q 043680 68 VATQDVDLRKKLQEVPGVPLIFGLRNA 94 (205)
Q Consensus 68 VATQD~~Lr~~LR~ipGVPliyi~~~~ 94 (205)
|.|+|..|++.++.. |||++|++...
T Consensus 109 lvTnD~~l~kvA~~~-GI~V~~l~~~~ 134 (142)
T 3i8o_A 109 LLTSDWIQYNLAKAQ-GIEAYFLEAAE 134 (142)
T ss_dssp EEESCHHHHHHHHHT-TCCEEECCCCC
T ss_pred EEcCCHHHHHHHHHc-CCEEEEecccc
Confidence 889999999999985 99999998743
No 4
>2dok_A Telomerase-binding protein EST1A; telomerase-associated protein, unknown function; 1.80A {Homo sapiens} PDB: 2hww_A 2hwx_A
Probab=96.43 E-value=0.0056 Score=49.65 Aligned_cols=83 Identities=18% Similarity=0.078 Sum_probs=54.0
Q ss_pred cceeccchHHHHHHhhccchH-----------------HHHHHHhh-cce----ee-------------cCCCC----CC
Q 043680 8 LPLLSSSPPSLFLFRLGQSHS-----------------EAVEAAYK-VAI----AR-------------CEHEK----LK 48 (205)
Q Consensus 8 ~~l~tT~CVl~ELe~LG~~~~-----------------~Al~iaK~-f~~----~k-------------C~H~~----~~ 48 (205)
-.++++..||+||+.|..... .|+.+... |.. .+ ..+.+ ..
T Consensus 38 ~~viIP~~VleELd~lk~~~~~~~~~~~~~~~~~~~AR~a~~~L~~~~~~~~~~i~~~~~~g~~l~~v~~~~~~~~~~~~ 117 (186)
T 2dok_A 38 YILVVPLIVINELDGLAKGQETDHRAGGYARVVQEKARKSIEFLEQRFESRDSCLRALTSRGNELESIAFRSEDITGQLG 117 (186)
T ss_dssp SEEEEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEECTTSCEESCCTTCCCCC----C
T ss_pred eEEEECHHHHHHHHHhccCCCccccccchhHHHHHHHHHHHHHHHHHHhhCCCeEEEEeccCcccccccccccccccCCC
Confidence 457888999999999865332 23333332 211 11 12211 34
Q ss_pred CHHHHHHHHHhccC------------------CccEEEEccCHHHHHHhhcCCCCcEEEec
Q 043680 49 SADACLMEVIGEKN------------------PEHFFVATQDVDLRKKLQEVPGVPLIFGL 91 (205)
Q Consensus 49 ~a~~CI~~~v~~~N------------------~~~yiVATQD~~Lr~~LR~ipGVPliyi~ 91 (205)
.+|+.|+.++..-. ....|+.|+|..||.+.+.. |||++.++
T Consensus 118 ~~D~~IL~~a~~l~~~~~~~~~~~~~~~~~~~~~~vvLvTnD~nLr~KA~~~-Gi~~~~~~ 177 (186)
T 2dok_A 118 NNDDLILSCCLHYCKDKAKDFMPASKEEPIRLLREVVLLTDDRNLRVKALTR-NVPVRDIP 177 (186)
T ss_dssp CHHHHHHHHHHTTCCCCGGGGCCC---CCCEEEEEEEEECCCHHHHHHHHHT-TCCEECHH
T ss_pred CccHHHHHHHHHHHHhcccccccccccccccCCCcEEEEeCcHHHHHHHHHC-CCeeCcHH
Confidence 79999999885321 12578999999999999985 99998764
No 5
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=84.77 E-value=0.96 Score=35.48 Aligned_cols=77 Identities=12% Similarity=-0.036 Sum_probs=48.9
Q ss_pred ceeccchHHHHHHhhccchHHHHHHHhh---cceeec---------------CCCCCC-CHHHHHHHHHhccCCccEEEE
Q 043680 9 PLLSSSPPSLFLFRLGQSHSEAVEAAYK---VAIARC---------------EHEKLK-SADACLMEVIGEKNPEHFFVA 69 (205)
Q Consensus 9 ~l~tT~CVl~ELe~LG~~~~~Al~iaK~---f~~~kC---------------~H~~~~-~a~~CI~~~v~~~N~~~yiVA 69 (205)
++||+..|+.||.... .+..+..... +....= +-.... .+|..++.+....+ ..|.
T Consensus 27 ~l~~p~~V~~El~~~~--~r~~l~~l~~~~~l~v~~~~~~~i~~v~~~~~~~gd~~~Ls~~D~~lIaLA~~l~---~~lv 101 (165)
T 2lcq_A 27 EGYTTPSVVEEIKDRE--SKIFLESLISAGKVKIAEPSKESIDRIIQVAKETGEVNELSKADIEVLALAYELK---GEIF 101 (165)
T ss_dssp CEEECHHHHTTCCSSH--HHHHHHHHHHTTSEEECCCCHHHHHHHHHHHHHHSCSSCSCHHHHHHHHHHHHHT---CCEE
T ss_pred CEEEChhhHHhhcCHH--HHHHHHHhhccCCEEEecCCHHHHHHHHHHHHHcCCcccCCHHHHHHHHhHHHhC---CeEE
Confidence 7999999999996432 2233433321 222210 100122 35566667775543 4788
Q ss_pred ccCHHHHHHhhcCCCCcEEEec
Q 043680 70 TQDVDLRKKLQEVPGVPLIFGL 91 (205)
Q Consensus 70 TQD~~Lr~~LR~ipGVPliyi~ 91 (205)
|.|..||+.++.. ||+++.++
T Consensus 102 T~D~~l~~vA~~~-Gv~v~~~~ 122 (165)
T 2lcq_A 102 SDDYNVQNIASLL-GLRFRTLK 122 (165)
T ss_dssp CCCHHHHHHHHHT-TCCEECCS
T ss_pred cCcHHHHHHHHHC-CCeEEchh
Confidence 9999999999986 99999877
No 6
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=51.84 E-value=4.2 Score=21.61 Aligned_cols=10 Identities=40% Similarity=0.710 Sum_probs=8.5
Q ss_pred CCcEEEecCc
Q 043680 84 GVPLIFGLRN 93 (205)
Q Consensus 84 GVPliyi~~~ 93 (205)
.|||||.++.
T Consensus 5 pvpiiycnrr 14 (21)
T 8tfv_A 5 PVPIIYCNRR 14 (26)
T ss_dssp CCCCEEEEGG
T ss_pred cccEEEEcCc
Confidence 5999999874
No 7
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=48.73 E-value=27 Score=24.61 Aligned_cols=40 Identities=15% Similarity=0.012 Sum_probs=28.4
Q ss_pred CccEEEEccCHHHHHHhhcC----CCCcEEEecCceEEEeCCChh
Q 043680 63 PEHFFVATQDVDLRKKLQEV----PGVPLIFGLRNALLLEPPSSF 103 (205)
Q Consensus 63 ~~~yiVATQD~~Lr~~LR~i----pGVPliyi~~~~~~LE~PS~a 103 (205)
+..++=-.+|.+.+..++++ ..||.||+..+.+.. -||..
T Consensus 30 ~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~-~~~~~ 73 (92)
T 2lqo_A 30 AYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKFADGSTLT-NPSAD 73 (92)
T ss_dssp CCEEEETTTCHHHHHHHHHHSSSSSCSCEEEETTSCEEE-SCCHH
T ss_pred ceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEEeCCEEEe-CCCHH
Confidence 34566678999999988764 349999997665544 45654
No 8
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=44.01 E-value=24 Score=24.58 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=23.0
Q ss_pred CccEEEEccCHHHHHHhh---cCCCCcEEEecCc
Q 043680 63 PEHFFVATQDVDLRKKLQ---EVPGVPLIFGLRN 93 (205)
Q Consensus 63 ~~~yiVATQD~~Lr~~LR---~ipGVPliyi~~~ 93 (205)
+..++=..+|.+++..|. .+++||.||++..
T Consensus 48 ~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~i~g~ 81 (105)
T 2yan_A 48 EYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGE 81 (105)
T ss_dssp CCEEEEGGGCHHHHHHHHHHHTCCSSCEEEETTE
T ss_pred CeEEEECCCCHHHHHHHHHHHCCCCCCeEEECCE
Confidence 345666778988887664 4689999998754
No 9
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=42.37 E-value=25 Score=24.80 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=23.0
Q ss_pred ccEEEEccCHHHHHHhhc---CCCCcEEEecCceE
Q 043680 64 EHFFVATQDVDLRKKLQE---VPGVPLIFGLRNAL 95 (205)
Q Consensus 64 ~~yiVATQD~~Lr~~LR~---ipGVPliyi~~~~~ 95 (205)
..++=..+|.+++..|.. .++||.||+....+
T Consensus 47 ~~~vdi~~~~~~~~~l~~~~g~~~vP~ifi~g~~i 81 (109)
T 1wik_A 47 YETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLV 81 (109)
T ss_dssp EEEEESSSCHHHHHHHHHHHSCCSSCEEECSSSEE
T ss_pred eEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEE
Confidence 345555678888887753 57899999987643
No 10
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=42.37 E-value=1.1e+02 Score=24.83 Aligned_cols=83 Identities=11% Similarity=0.071 Sum_probs=52.7
Q ss_pred eccchHHHHHHhhc--------------cchHHHHHHHhh--c-ceeecCCC--CCCCHHHHHHHHHhccC-CccEEEEc
Q 043680 11 LSSSPPSLFLFRLG--------------QSHSEAVEAAYK--V-AIARCEHE--KLKSADACLMEVIGEKN-PEHFFVAT 70 (205)
Q Consensus 11 ~tT~CVl~ELe~LG--------------~~~~~Al~iaK~--f-~~~kC~H~--~~~~a~~CI~~~v~~~N-~~~yiVAT 70 (205)
.+...=++||+.|. +.+..++++++. + -.+..... ......+-+.+++...+ ..+++|.+
T Consensus 72 ~v~~~t~~eL~~l~~~~~~~~~~~~~~iPtL~evL~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~~~vii~S 151 (252)
T 2pz0_A 72 FVKDFTLEEIKKLDAGIKFGEKFAGERIPTLYEVFELIGDKDFLVNIEIKSGIVLYPGIEEKLIKAIKEYNFEERVIISS 151 (252)
T ss_dssp BGGGSCHHHHTTSCSSTTTCGGGTTCCCCBHHHHHHHHTTSCCEEEEEECCSSCCCTTHHHHHHHHHHHTTCTTTEEEEE
T ss_pred chhhCcHHHHhhcCCCCCCCCCCCCCcCCCHHHHHHHhhhcCCeEEEEeCCCCcccHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 34445578888763 357778888754 1 11112211 11234466777776543 46799999
Q ss_pred cCHHHHHHhhcC-CCCcEEEecCc
Q 043680 71 QDVDLRKKLQEV-PGVPLIFGLRN 93 (205)
Q Consensus 71 QD~~Lr~~LR~i-pGVPliyi~~~ 93 (205)
=|.+.-.++|++ |++|+.|+...
T Consensus 152 F~~~~l~~~~~~~p~~~~~~l~~~ 175 (252)
T 2pz0_A 152 FNHYSLRDVKKMAPHLKIGLLYQC 175 (252)
T ss_dssp SBHHHHHHHHHHCTTSEEEEEECS
T ss_pred CCHHHHHHHHHHCCCCCEEEEecC
Confidence 999988888864 99999887654
No 11
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=40.05 E-value=56 Score=22.65 Aligned_cols=86 Identities=14% Similarity=0.121 Sum_probs=45.7
Q ss_pred eecceeccchHHHHHHhhccchHHHHHHH--hhcceeecCCCCCCCHHHHHHHHHhccCCccEEEEccCHHHHHHhhcCC
Q 043680 6 LLLPLLSSSPPSLFLFRLGQSHSEAVEAA--YKVAIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQEVP 83 (205)
Q Consensus 6 ~~~~l~tT~CVl~ELe~LG~~~~~Al~ia--K~f~~~kC~H~~~~~a~~CI~~~v~~~N~~~yiVATQD~~Lr~~LR~ip 83 (205)
+||=++.+.|-. +..+-+.+.....-. ..+..+..+........+-+..++...+-.--++.-.+..+.+.+. +.
T Consensus 37 ~ll~f~~~~C~~--C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-v~ 113 (145)
T 3erw_A 37 TILHFWTSWCPP--CKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYH-II 113 (145)
T ss_dssp EEEEEECSSCHH--HHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTT-CC
T ss_pred EEEEEECCCCHH--HHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcC-cC
Confidence 566778888852 222222222211111 1344444433222235566777776655444445556778877776 67
Q ss_pred CCcEEEec-Cce
Q 043680 84 GVPLIFGL-RNA 94 (205)
Q Consensus 84 GVPliyi~-~~~ 94 (205)
|+|.+|+. .+.
T Consensus 114 ~~P~~~lid~~G 125 (145)
T 3erw_A 114 TIPTSFLLNEKG 125 (145)
T ss_dssp EESEEEEECTTC
T ss_pred ccCeEEEEcCCC
Confidence 99998775 444
No 12
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=38.84 E-value=30 Score=26.12 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=24.1
Q ss_pred ccEEEEccCHHHHHHhhc---CCCCcEEEecCce
Q 043680 64 EHFFVATQDVDLRKKLQE---VPGVPLIFGLRNA 94 (205)
Q Consensus 64 ~~yiVATQD~~Lr~~LR~---ipGVPliyi~~~~ 94 (205)
..++=..+|.+++..|+. .+.||.||+....
T Consensus 67 y~~vdI~~d~~~~~~L~~~~G~~tvP~VfI~G~~ 100 (135)
T 2wci_A 67 FAYVDILQNPDIRAELPKYANWPTFPQLWVDGEL 100 (135)
T ss_dssp CEEEEGGGCHHHHHHHHHHHTCCSSCEEEETTEE
T ss_pred eEEEECCCCHHHHHHHHHHHCCCCcCEEEECCEE
Confidence 456666789999988875 5789999998754
No 13
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=38.62 E-value=39 Score=23.61 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=23.0
Q ss_pred ccEEEEccCHHHHHHhh----cCCCCcEEEecCce
Q 043680 64 EHFFVATQDVDLRKKLQ----EVPGVPLIFGLRNA 94 (205)
Q Consensus 64 ~~yiVATQD~~Lr~~LR----~ipGVPliyi~~~~ 94 (205)
..++-..+|.+++..|. ...+||.||++...
T Consensus 43 y~~idI~~~~~~~~~l~~~~~g~~~vP~ifi~g~~ 77 (99)
T 3qmx_A 43 FQEYCIDGDNEAREAMAARANGKRSLPQIFIDDQH 77 (99)
T ss_dssp CEEEECTTCHHHHHHHHHHTTTCCCSCEEEETTEE
T ss_pred CEEEEcCCCHHHHHHHHHHhCCCCCCCEEEECCEE
Confidence 45566678888888775 45789999987643
No 14
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.92 E-value=31 Score=24.68 Aligned_cols=30 Identities=20% Similarity=0.103 Sum_probs=21.1
Q ss_pred cEEEEccCHHHHHHhhcC-----------CCCcEEEecCce
Q 043680 65 HFFVATQDVDLRKKLQEV-----------PGVPLIFGLRNA 94 (205)
Q Consensus 65 ~yiVATQD~~Lr~~LR~i-----------pGVPliyi~~~~ 94 (205)
.++=-+.|.+++..|+.. +.||.||+....
T Consensus 42 ~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~~ 82 (111)
T 2ct6_A 42 EEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRY 82 (111)
T ss_dssp EEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTEE
T ss_pred EEEECCCCHHHHHHHHHHhcccccccCCCCCCCEEEECCEE
Confidence 344456788888877754 459999998653
No 15
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=31.63 E-value=84 Score=24.65 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=28.5
Q ss_pred HHHHHHHhccCCccEEEEccCHHHHH-HhhcCCCCcEEEecCce
Q 043680 52 ACLMEVIGEKNPEHFFVATQDVDLRK-KLQEVPGVPLIFGLRNA 94 (205)
Q Consensus 52 ~CI~~~v~~~N~~~yiVATQD~~Lr~-~LR~ipGVPliyi~~~~ 94 (205)
+.|..++ ..+-.-+||+..|.+... .|... |+|+|++.+..
T Consensus 55 ~~~~~l~-~~~~dgiIi~~~~~~~~~~~l~~~-~iPvV~~~~~~ 96 (277)
T 3e61_A 55 GYLATFV-SHNCTGMISTAFNENIIENTLTDH-HIPFVFIDRIN 96 (277)
T ss_dssp HHHHHHH-HTTCSEEEECGGGHHHHHHHHHHC--CCEEEGGGCC
T ss_pred HHHHHHH-hCCCCEEEEecCChHHHHHHHHcC-CCCEEEEeccC
Confidence 4444444 344566888888888777 88874 99999998754
No 16
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=31.54 E-value=59 Score=23.76 Aligned_cols=32 Identities=16% Similarity=0.332 Sum_probs=24.1
Q ss_pred ccEEEEccCHHHHHHhhc---CCCCcEEEecCceE
Q 043680 64 EHFFVATQDVDLRKKLQE---VPGVPLIFGLRNAL 95 (205)
Q Consensus 64 ~~yiVATQD~~Lr~~LR~---ipGVPliyi~~~~~ 95 (205)
..++--.+|.+++..|++ .+.||.||+....+
T Consensus 53 ~~~vdV~~d~~~~~~l~~~tg~~tvP~vfI~g~~I 87 (118)
T 2wem_A 53 YAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFV 87 (118)
T ss_dssp CEEEESSSCHHHHHHHHHHHTCCSSCEEEETTEEE
T ss_pred CEEEEcCCCHHHHHHHHHHhCCCCcCeEEECCEEE
Confidence 455555789999998865 46799999987543
No 17
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=31.07 E-value=1.4e+02 Score=21.45 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=27.3
Q ss_pred CHHHHHHHHHhccCCccEEEEccCHHHHHHhhcCCCCcEEEec
Q 043680 49 SADACLMEVIGEKNPEHFFVATQDVDLRKKLQEVPGVPLIFGL 91 (205)
Q Consensus 49 ~a~~CI~~~v~~~N~~~yiVATQD~~Lr~~LR~ipGVPliyi~ 91 (205)
...+-+..++...+-..|-+...+.++.+.+. +.|+|.+|+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-v~~~P~~~li 137 (165)
T 3ha9_A 96 DTPEMFRKFIANYGDPSWIMVMDDGSLVEKFN-VRSIDYIVIM 137 (165)
T ss_dssp CCHHHHHHHHHHHSCTTSEEEECCSHHHHHTT-CCSSSEEEEE
T ss_pred CCHHHHHHHHHHcCCCCeeEEeChHHHHHHhC-CCCceEEEEE
Confidence 34556667776544313444444888888885 6799999884
No 18
>2dk4_A PRE-mRNA-splicing factor 18; SFM domain, HPRP18, structural NPPSFA, national project on protein structural and function analyses; NMR {Homo sapiens} SCOP: a.140.6.1
Probab=30.75 E-value=6.2 Score=27.95 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=23.0
Q ss_pred cEEEEccCHHHHHHhhcCCCCcEEEecC
Q 043680 65 HFFVATQDVDLRKKLQEVPGVPLIFGLR 92 (205)
Q Consensus 65 ~yiVATQD~~Lr~~LR~ipGVPliyi~~ 92 (205)
.+-|-|.|.+++++||.+ |=||.++-.
T Consensus 22 ~~~v~~~d~eV~~~LR~l-gEPi~LFGE 48 (76)
T 2dk4_A 22 KLPMTLSRQEVIRRLRER-GEPIRLFGE 48 (76)
T ss_dssp CSSCCSCHHHHHHHHHHH-TCCSSCTTC
T ss_pred cCCCCCCHHHHHHHHHHc-CCCeeecCC
Confidence 345889999999999997 999988764
No 19
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=30.68 E-value=29 Score=25.92 Aligned_cols=32 Identities=13% Similarity=0.288 Sum_probs=25.3
Q ss_pred ccEEEEccCHHHHHHhhcCCC---CcEEEecCceE
Q 043680 64 EHFFVATQDVDLRKKLQEVPG---VPLIFGLRNAL 95 (205)
Q Consensus 64 ~~yiVATQD~~Lr~~LR~ipG---VPliyi~~~~~ 95 (205)
..++--..|.++|..|.+..| ||-|||+..-+
T Consensus 53 ~~~~~v~~~~~~r~~l~~~sg~~TvPqIFI~g~~I 87 (118)
T 2wul_A 53 YAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFV 87 (118)
T ss_dssp CEEEETTSCHHHHHHHHHHHTCCSSCEEEETTEEE
T ss_pred eEeecccCCHHHHHHHHHhccCCCCCeEeECCEEE
Confidence 456667899999999987644 99999997543
No 20
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=30.06 E-value=44 Score=22.68 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=20.4
Q ss_pred cEEEEccCHHHHHHhhcC-----CCCcEEEecCce
Q 043680 65 HFFVATQDVDLRKKLQEV-----PGVPLIFGLRNA 94 (205)
Q Consensus 65 ~yiVATQD~~Lr~~LR~i-----pGVPliyi~~~~ 94 (205)
.++=-+.|.+++..|++. ..||.||+....
T Consensus 36 ~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi~g~~ 70 (93)
T 1t1v_A 36 QLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHY 70 (93)
T ss_dssp EEEETTSCHHHHHHHHHHTTCTTCCSCEEEETTEE
T ss_pred EEEECCCCHHHHHHHHHHhCCCCCCCCEEEECCEE
Confidence 344456777777766643 369999998754
No 21
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=29.90 E-value=34 Score=24.58 Aligned_cols=31 Identities=19% Similarity=0.241 Sum_probs=22.5
Q ss_pred ccEEEEccCHHHHHHhhc---CCCCcEEEecCce
Q 043680 64 EHFFVATQDVDLRKKLQE---VPGVPLIFGLRNA 94 (205)
Q Consensus 64 ~~yiVATQD~~Lr~~LR~---ipGVPliyi~~~~ 94 (205)
..++=-+.|.+++..|.. .+.||.||+....
T Consensus 48 y~~~di~~d~~~~~~l~~~~g~~tvP~ifi~g~~ 81 (111)
T 3zyw_A 48 FSSFDIFSDEEVRQGLKAYSSWPTYPQLYVSGEL 81 (111)
T ss_dssp CEEEEGGGCHHHHHHHHHHHTCCSSCEEEETTEE
T ss_pred eEEEECcCCHHHHHHHHHHHCCCCCCEEEECCEE
Confidence 344444679999988864 4679999998743
No 22
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=28.25 E-value=45 Score=21.46 Aligned_cols=21 Identities=38% Similarity=0.463 Sum_probs=15.3
Q ss_pred HHHHHHhhc-CCCCcEEEecCc
Q 043680 73 VDLRKKLQE-VPGVPLIFGLRN 93 (205)
Q Consensus 73 ~~Lr~~LR~-ipGVPliyi~~~ 93 (205)
.+|.++... +.+||.||+...
T Consensus 46 ~~l~~~~~~~~~~vP~i~~~g~ 67 (85)
T 1ego_A 46 EDLQQKAGKPVETVPQIFVDQQ 67 (85)
T ss_dssp HHHHHHTCCCSCCSCEEEETTE
T ss_pred HHHHHHhCCCCceeCeEEECCE
Confidence 367777753 789999988653
No 23
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=27.99 E-value=44 Score=24.36 Aligned_cols=28 Identities=21% Similarity=0.496 Sum_probs=21.6
Q ss_pred EEEccCHHHHHHhhc---CCCCcEEEecCce
Q 043680 67 FVATQDVDLRKKLQE---VPGVPLIFGLRNA 94 (205)
Q Consensus 67 iVATQD~~Lr~~LR~---ipGVPliyi~~~~ 94 (205)
+=-..|.+++..|.+ .+.||.||++...
T Consensus 54 ~dv~~~~~~~~~l~~~sg~~tvP~vfI~g~~ 84 (121)
T 3gx8_A 54 YNVLEDPELREGIKEFSEWPTIPQLYVNKEF 84 (121)
T ss_dssp EECTTCHHHHHHHHHHHTCCSSCEEEETTEE
T ss_pred EEecCCHHHHHHHHHHhCCCCCCeEEECCEE
Confidence 335789999998875 4679999998743
No 24
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=26.01 E-value=57 Score=23.06 Aligned_cols=31 Identities=19% Similarity=0.127 Sum_probs=22.6
Q ss_pred ccEEEEccCHHHHHHhhc---CCCCcEEEecCce
Q 043680 64 EHFFVATQDVDLRKKLQE---VPGVPLIFGLRNA 94 (205)
Q Consensus 64 ~~yiVATQD~~Lr~~LR~---ipGVPliyi~~~~ 94 (205)
..++=-.+|.+++..|.. .+.||.||++...
T Consensus 50 ~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi~g~~ 83 (109)
T 3ipz_A 50 FEDVNILENEMLRQGLKEYSNWPTFPQLYIGGEF 83 (109)
T ss_dssp CEEEEGGGCHHHHHHHHHHHTCSSSCEEEETTEE
T ss_pred cEEEECCCCHHHHHHHHHHHCCCCCCeEEECCEE
Confidence 344444688999888864 4679999998743
No 25
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=25.60 E-value=1.3e+02 Score=24.09 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=30.1
Q ss_pred cceeecCCCC-CCCHHHHHHHHHhccCCccEEEEccCH--H-HHHHhhcCCCCcEEEecCc
Q 043680 37 VAIARCEHEK-LKSADACLMEVIGEKNPEHFFVATQDV--D-LRKKLQEVPGVPLIFGLRN 93 (205)
Q Consensus 37 f~~~kC~H~~-~~~a~~CI~~~v~~~N~~~yiVATQD~--~-Lr~~LR~ipGVPliyi~~~ 93 (205)
|...-|.... .....+.|..++ ..+-.-+|++..+. + .-..+.+ |+|+|++.+.
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~~~~~~~l~~--~iPvV~i~~~ 103 (303)
T 3kke_A 46 TDVLLGQIDAPPRGTQQLSRLVS-EGRVDGVLLQRREDFDDDMLAAVLE--GVPAVTINSR 103 (303)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHH-SCSSSEEEECCCTTCCHHHHHHHHT--TSCEEEESCC
T ss_pred CEEEEEeCCCChHHHHHHHHHHH-hCCCcEEEEecCCCCcHHHHHHHhC--CCCEEEECCc
Confidence 5555554322 222334444444 34445577765432 2 5566777 9999999865
No 26
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.34 E-value=7.6 Score=25.65 Aligned_cols=31 Identities=29% Similarity=0.580 Sum_probs=22.4
Q ss_pred ccCHHHHHHhhcCCCCcEE------------EecCceEEEeCCC
Q 043680 70 TQDVDLRKKLQEVPGVPLI------------FGLRNALLLEPPS 101 (205)
Q Consensus 70 TQD~~Lr~~LR~ipGVPli------------yi~~~~~~LE~PS 101 (205)
=..++|+.+|-++ |.||+ |..+-.|+|.+|+
T Consensus 11 W~~~ELQaKLaE~-GAPi~g~REElvdRLk~Y~~QtGi~lnkP~ 53 (58)
T 2do5_A 11 WAAQELQAKLAEI-GAPIQGNREELVERLQSYTRQTGIVLNRPS 53 (58)
T ss_dssp SCHHHHHHHHHHH-TCCCCSCHHHHHHHHHHHHHHHCCCCCCTT
T ss_pred ccCHHHHHHHHHh-CCcccccHHHHHHHHHHHhhccceeecCCC
Confidence 3457899999998 99987 5555566666654
No 27
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=23.65 E-value=2.8e+02 Score=22.16 Aligned_cols=82 Identities=12% Similarity=0.017 Sum_probs=51.7
Q ss_pred ccchHHHHHHhhc-------cchHHHHHHHhhcc--eeecCCCCCCC------HHHHHHHHHhccC-CccEEEEccCHHH
Q 043680 12 SSSPPSLFLFRLG-------QSHSEAVEAAYKVA--IARCEHEKLKS------ADACLMEVIGEKN-PEHFFVATQDVDL 75 (205)
Q Consensus 12 tT~CVl~ELe~LG-------~~~~~Al~iaK~f~--~~kC~H~~~~~------a~~CI~~~v~~~N-~~~yiVATQD~~L 75 (205)
+...=++||+.|. +.+..++.+++... .+...-+.... ..+-+.+++...+ ..+.+|.+=|.+.
T Consensus 63 v~~~t~~el~~l~~~~~~~iptL~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~l~~~~~~~~v~~~Sf~~~~ 142 (238)
T 3no3_A 63 IQSCTYDELKDLQLSNGEKLPTLEQYLKRAKKLKNIRLIFELKSHDTPERNRDAARLSVQMVKRMKLAKRTDYISFNMDA 142 (238)
T ss_dssp GGGSCHHHHTTCBCTTSCBCCBHHHHHHHHHHCTTCEEEEEECCCSSHHHHHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred hHhCCHHHHhhCCCCCCCcCCcHHHHHHHHhhcCCceEEEEeCCCCCcchhHHHHHHHHHHHHHcCCcCCEEEEECCHHH
Confidence 4445578888873 36678888886531 12221121111 2345566665543 3679999999988
Q ss_pred HHHhhc-CCCCcEEEecCc
Q 043680 76 RKKLQE-VPGVPLIFGLRN 93 (205)
Q Consensus 76 r~~LR~-ipGVPliyi~~~ 93 (205)
-.++|+ .|.+|+.|+...
T Consensus 143 l~~~~~~~p~~~~~~l~~~ 161 (238)
T 3no3_A 143 CKEFIRLCPKSEVSYLNGE 161 (238)
T ss_dssp HHHHHHHCTTSCEEECSSC
T ss_pred HHHHHHHCCCCeEEEEeCC
Confidence 888885 599999998653
No 28
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=22.97 E-value=51 Score=29.59 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=29.3
Q ss_pred HHHHHHHHHhccCCccEEEEccC----HHHHHHhhcCCCCcEEEec
Q 043680 50 ADACLMEVIGEKNPEHFFVATQD----VDLRKKLQEVPGVPLIFGL 91 (205)
Q Consensus 50 a~~CI~~~v~~~N~~~yiVATQD----~~Lr~~LR~ipGVPliyi~ 91 (205)
+.++|..++...|-...+|||.- .+|++.|.. .+|+++.+.
T Consensus 267 I~rqIk~~vk~~~lksVFIATDa~~~~~ELk~~L~~-~~v~vv~~~ 311 (362)
T 3zy2_A 267 ILEQIVEKVGSIGAKSVFVASDKDHMIDEINEALKP-YEIEAHRQE 311 (362)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESSCCCHHHHHHHHGG-GTCCEECCS
T ss_pred HHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHHhhc-cCceEEEeC
Confidence 44667777777678899999965 467777765 377776544
No 29
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=22.30 E-value=2e+02 Score=20.28 Aligned_cols=84 Identities=13% Similarity=0.011 Sum_probs=41.2
Q ss_pred ceecceeccchHHHHHHhh-ccchHHHHHHH--hhcceeecCCCC---CCCHHHHHHHHHhccCCccEEEEccCH-----
Q 043680 5 TLLLPLLSSSPPSLFLFRL-GQSHSEAVEAA--YKVAIARCEHEK---LKSADACLMEVIGEKNPEHFFVATQDV----- 73 (205)
Q Consensus 5 ~~~~~l~tT~CVl~ELe~L-G~~~~~Al~ia--K~f~~~kC~H~~---~~~a~~CI~~~v~~~N~~~yiVATQD~----- 73 (205)
.+||=++.|.|.- +... -+.+.....-- +.+..+..+... .....+-+..++...+-.--++...+.
T Consensus 30 ~vlv~f~a~wC~~--C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 107 (158)
T 3eyt_A 30 VIVIEAFQMLCPG--CVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMP 107 (158)
T ss_dssp EEEEEEECTTCHH--HHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSSC
T ss_pred EEEEEEECCcCcc--hhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhhH
Confidence 4567788888842 2221 12222211111 235555443311 123556677777655433223333343
Q ss_pred HHHHHhhcCCCCcEEEec
Q 043680 74 DLRKKLQEVPGVPLIFGL 91 (205)
Q Consensus 74 ~Lr~~LR~ipGVPliyi~ 91 (205)
.+.+.+. +.|+|.+|+.
T Consensus 108 ~~~~~~~-v~~~P~~~li 124 (158)
T 3eyt_A 108 RTMAAYQ-MRGTPSLLLI 124 (158)
T ss_dssp HHHHHTT-CCSSSEEEEE
T ss_pred HHHHHcC-CCCCCEEEEE
Confidence 4666665 6799976664
No 30
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*
Probab=22.16 E-value=1.1e+02 Score=22.36 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=17.8
Q ss_pred EEEEccC---HHHHHHhhc---CCCCcEEEecCceE
Q 043680 66 FFVATQD---VDLRKKLQE---VPGVPLIFGLRNAL 95 (205)
Q Consensus 66 yiVATQD---~~Lr~~LR~---ipGVPliyi~~~~~ 95 (205)
++=...| .+++..|.+ +++||.||+....+
T Consensus 70 ~vdvd~~~~~~~~~~~L~~~~g~~tVP~vfi~g~~i 105 (129)
T 3ctg_A 70 VLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHI 105 (129)
T ss_dssp EEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETTEEE
T ss_pred EEEccccCCHHHHHHHHHHHhCCCCCCEEEECCEEE
Confidence 3334454 344554443 57899999986543
No 31
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=22.10 E-value=1.5e+02 Score=20.30 Aligned_cols=30 Identities=7% Similarity=0.171 Sum_probs=21.1
Q ss_pred cCHHHHHHhhcCCCCcEEEecCceEEEeCCCh
Q 043680 71 QDVDLRKKLQEVPGVPLIFGLRNALLLEPPSS 102 (205)
Q Consensus 71 QD~~Lr~~LR~ipGVPliyi~~~~~~LE~PS~ 102 (205)
.+.+|..++. -+||+||+....+.+-..+.
T Consensus 55 ~~~el~~~~g--~~vP~l~~~g~~~~~~g~~~ 84 (100)
T 1wjk_A 55 ENSTWYERYK--FDIPVFHLNGQFLMMHRVNT 84 (100)
T ss_dssp TTHHHHHHSS--SSCSEEEESSSEEEESSCCH
T ss_pred chHHHHHHHC--CCCCEEEECCEEEEecCCCH
Confidence 5688888887 59999998776543444444
No 32
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=21.50 E-value=2.8e+02 Score=21.59 Aligned_cols=40 Identities=8% Similarity=0.113 Sum_probs=25.5
Q ss_pred HHHHHHHhccCCccEEEEccC-HHHHHHhhcCCCCcEEEecCc
Q 043680 52 ACLMEVIGEKNPEHFFVATQD-VDLRKKLQEVPGVPLIFGLRN 93 (205)
Q Consensus 52 ~CI~~~v~~~N~~~yiVATQD-~~Lr~~LR~ipGVPliyi~~~ 93 (205)
+.|..++ ..+-.-+|++..+ .++...|++ .|+|+|++.+.
T Consensus 54 ~~~~~l~-~~~vdgiIi~~~~~~~~~~~l~~-~~iPvV~i~~~ 94 (276)
T 3jy6_A 54 TLLRAIG-SRGFDGLILQSFSNPQTVQEILH-QQMPVVSVDRE 94 (276)
T ss_dssp HHHHHHH-TTTCSEEEEESSCCHHHHHHHHT-TSSCEEEESCC
T ss_pred HHHHHHH-hCCCCEEEEecCCcHHHHHHHHH-CCCCEEEEecc
Confidence 4455554 3444556666655 455666776 59999999864
No 33
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=21.49 E-value=1.5e+02 Score=18.20 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=17.0
Q ss_pred CHHHHHHhhcCCCCcEEEecCceEEE
Q 043680 72 DVDLRKKLQEVPGVPLIFGLRNALLL 97 (205)
Q Consensus 72 D~~Lr~~LR~ipGVPliyi~~~~~~L 97 (205)
|.++..++. |.|+|.+++ ++.++.
T Consensus 39 ~~~~~~~~~-v~~~Pt~~~-~G~~~~ 62 (77)
T 1ilo_A 39 EMDQILEAG-LTALPGLAV-DGELKI 62 (77)
T ss_dssp SHHHHHHHT-CSSSSCEEE-TTEEEE
T ss_pred CHHHHHHCC-CCcCCEEEE-CCEEEE
Confidence 777777664 679999999 444443
No 34
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=21.44 E-value=1.5e+02 Score=22.07 Aligned_cols=32 Identities=22% Similarity=0.088 Sum_probs=23.0
Q ss_pred ccEEEEccCHHHHHHhhcC-----------CCCcEEEecCceE
Q 043680 64 EHFFVATQDVDLRKKLQEV-----------PGVPLIFGLRNAL 95 (205)
Q Consensus 64 ~~yiVATQD~~Lr~~LR~i-----------pGVPliyi~~~~~ 95 (205)
...+-.+.|.+.|..+++. +.||.||+....+
T Consensus 33 feEidI~~d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~~i 75 (121)
T 1u6t_A 33 FEEKDIAANEENRKWMRENVPENSRPATGYPLPPQIFNESQYR 75 (121)
T ss_dssp EEEEECTTCHHHHHHHHHHSCGGGSCSSSSCCSCEEEETTEEE
T ss_pred eEEEECCCCHHHHHHHHHhccccccccCCCcCCCEEEECCEEE
Confidence 4455667899999888732 4699999887443
No 35
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=21.12 E-value=3e+02 Score=21.58 Aligned_cols=80 Identities=16% Similarity=0.030 Sum_probs=50.4
Q ss_pred ccchHHHHHHhhc---cchHHHHHHHh-h--c-ceeecCCCCCCC--HHHHHHHHHhccCCccEEEEccCHHHHHHhhc-
Q 043680 12 SSSPPSLFLFRLG---QSHSEAVEAAY-K--V-AIARCEHEKLKS--ADACLMEVIGEKNPEHFFVATQDVDLRKKLQE- 81 (205)
Q Consensus 12 tT~CVl~ELe~LG---~~~~~Al~iaK-~--f-~~~kC~H~~~~~--a~~CI~~~v~~~N~~~yiVATQD~~Lr~~LR~- 81 (205)
+...=++||+.|. +.+..++++++ . + -.+...+....+ ..+-+.+++.. ..+++|.+=|.+.-.++|+
T Consensus 64 v~~~t~~eL~~l~~~iptL~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~--~~~v~i~Sf~~~~l~~~~~~ 141 (224)
T 1vd6_A 64 VFQVDYADLKAQEPDLPRLEEVLALKEAFPQAVFNVELKSFPGLGEEAARRLAALLRG--REGVWVSSFDPLALLALRKA 141 (224)
T ss_dssp GGGSCHHHHHHHSTTCCBHHHHHGGGGTCTTCEEEEEECCCTTSHHHHHHHHHHHTTT--CSSEEEEESCHHHHHHHHHH
T ss_pred hhhCCHHHHHhcCCCCCCHHHHHHhhhccCCceEEEEECCCCCccHHHHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHH
Confidence 4445578888774 46777787776 1 1 111122111111 23446666665 5789999999998888886
Q ss_pred CCCCcEEEecCc
Q 043680 82 VPGVPLIFGLRN 93 (205)
Q Consensus 82 ipGVPliyi~~~ 93 (205)
.|++|+.|+...
T Consensus 142 ~p~~~~~~l~~~ 153 (224)
T 1vd6_A 142 APGLPLGFLMAE 153 (224)
T ss_dssp CTTSCEEEEESS
T ss_pred CCCCCEEEEecc
Confidence 699999887654
No 36
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3
Probab=21.00 E-value=3.1e+02 Score=21.79 Aligned_cols=78 Identities=14% Similarity=0.112 Sum_probs=49.4
Q ss_pred eccchHHHHHHhhc----cchHHHHHHHhhcceeecCCCCCCCHHHHHHHHHhccCCccEEEEccCHHHHHHhhcCCCCc
Q 043680 11 LSSSPPSLFLFRLG----QSHSEAVEAAYKVAIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQEVPGVP 86 (205)
Q Consensus 11 ~tT~CVl~ELe~LG----~~~~~Al~iaK~f~~~kC~H~~~~~a~~CI~~~v~~~N~~~yiVATQD~~Lr~~LR~ipGVP 86 (205)
.+...=++||+.|. +.+..++++++.-..+...-+ .....+-+.+++.. ..+++|.+-| |+.--+..|++|
T Consensus 73 ~v~d~T~~eL~~l~~~~iptL~evL~~~~~~~~l~iEiK-~~~~~~~v~~~l~~--~~~vii~Sf~--l~~~~~~~p~~~ 147 (234)
T 1o1z_A 73 KIRDATVSELKELTDGKITTLKEVFENVSDDKIINIEIK-EREAADAVLEISKK--RKNLIFSSFD--LDLLDEKFKGTK 147 (234)
T ss_dssp EGGGSCHHHHHHHTTTCCCBHHHHHHHSCTTSEEEEEEC-CGGGHHHHHHHHTT--CCSEEEEESC--HHHHHHHCTTSC
T ss_pred CcccCcHHHHhcCCCCCCCCHHHHHHhcccCCeEEEEeC-CccHHHHHHHHHhc--cCCEEEEchh--HHHHHhhCCCCc
Confidence 34455578888883 467888888765111111111 22345667778766 5789999999 544333579999
Q ss_pred EEEecCc
Q 043680 87 LIFGLRN 93 (205)
Q Consensus 87 liyi~~~ 93 (205)
+.|+...
T Consensus 148 ~~~l~~~ 154 (234)
T 1o1z_A 148 YGYLIDE 154 (234)
T ss_dssp EEEECCT
T ss_pred EEEEecc
Confidence 9887653
No 37
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=20.83 E-value=2e+02 Score=19.78 Aligned_cols=44 Identities=18% Similarity=0.379 Sum_probs=27.9
Q ss_pred CHHHHHHHHHhccCCccEEEEcc------CHHHHHHhhcCCCCcEEEecC
Q 043680 49 SADACLMEVIGEKNPEHFFVATQ------DVDLRKKLQEVPGVPLIFGLR 92 (205)
Q Consensus 49 ~a~~CI~~~v~~~N~~~yiVATQ------D~~Lr~~LR~ipGVPliyi~~ 92 (205)
++.+++..+.....++-+|+-.+ ..++-+.||+.|.+|+|.+..
T Consensus 37 ~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~ 86 (140)
T 3h5i_A 37 TGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTA 86 (140)
T ss_dssp SHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEES
T ss_pred ChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEEC
Confidence 46666665543344454555432 246778888889999998865
No 38
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=20.60 E-value=3.3e+02 Score=21.79 Aligned_cols=80 Identities=15% Similarity=0.070 Sum_probs=52.6
Q ss_pred ccchHHHHHHhhc-------cchHHHHHHHhhc-----ceeecCCCC----CCCHHHHHHHHHhccC-CccEEEEccCHH
Q 043680 12 SSSPPSLFLFRLG-------QSHSEAVEAAYKV-----AIARCEHEK----LKSADACLMEVIGEKN-PEHFFVATQDVD 74 (205)
Q Consensus 12 tT~CVl~ELe~LG-------~~~~~Al~iaK~f-----~~~kC~H~~----~~~a~~CI~~~v~~~N-~~~yiVATQD~~ 74 (205)
+...=++||..|. +.+..++.+++.. -.+...+.. .....+-+.+++...+ ..+++|.+=|.+
T Consensus 73 v~~~t~~eL~~l~~~~~~~iptL~evl~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~l~~~~~~~~v~i~Sf~~~ 152 (258)
T 2o55_A 73 IGDLSLEELKRLDVGGGHTIPSLEELFVAIEEQKFNLKLNLELKGEEWKRKESGDHQRLLLLVEKYHMQERVDYCSFHHE 152 (258)
T ss_dssp GGGSCHHHHTTCBSSSSCBCCBHHHHHHHHHHSCSCCEEEEEECCSSSSSTTSSHHHHHHHHHHTTTCGGGEEEEESSHH
T ss_pred hhhCcHHHHhhcCCCCCCccCCHHHHHHHhhhhcCceEEEEEEccCCccccchHHHHHHHHHHHHcCCCCCEEEEeCCHH
Confidence 4445578888773 3678888887642 112222211 1335566777776543 368999999999
Q ss_pred HHHHhhc-CCCCcEEEec
Q 043680 75 LRKKLQE-VPGVPLIFGL 91 (205)
Q Consensus 75 Lr~~LR~-ipGVPliyi~ 91 (205)
.-.++|+ .|.+|+.|+.
T Consensus 153 ~l~~~~~~~p~~~~~~l~ 170 (258)
T 2o55_A 153 ALAHLKALCPDVKITYLF 170 (258)
T ss_dssp HHHHHHHHCTTCEEEEEC
T ss_pred HHHHHHHHCCCCcEEEEE
Confidence 8888886 5999998876
No 39
>2zxj_A Transcriptional regulatory protein WALR; two-component system, YYCG, response regulator, helix-turn-H motif, DNA-binding domain; 1.87A {Staphylococcus aureus} PDB: 2d1v_A
Probab=20.38 E-value=95 Score=22.81 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=21.3
Q ss_pred HHHHhhcCCCCc--EEEecCceEEEeCCC
Q 043680 75 LRKKLQEVPGVP--LIFGLRNALLLEPPS 101 (205)
Q Consensus 75 Lr~~LR~ipGVP--liyi~~~~~~LE~PS 101 (205)
||++|...++-| |..+.+-++.|+.+-
T Consensus 84 LRkKL~~~~~~~~~I~TvrG~GY~l~~~e 112 (120)
T 2zxj_A 84 LREKIEDDPSHPEYIVTRRGVGYFLQQHE 112 (120)
T ss_dssp HHHHHCSSTTSCSSEEEETTTEEEECCC-
T ss_pred HHHHHhhCCCCCCeEEEeCCEeeEEecCc
Confidence 788888777766 778888899999764
No 40
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=20.22 E-value=2.3e+02 Score=19.77 Aligned_cols=81 Identities=6% Similarity=-0.012 Sum_probs=43.9
Q ss_pred eecceeccchHHHHHHhhccchHHHHHHH--hhcceeecCCCCCCCHHHHHHHHHhccCCccEEEEccCHHHHHHhhcCC
Q 043680 6 LLLPLLSSSPPSLFLFRLGQSHSEAVEAA--YKVAIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQEVP 83 (205)
Q Consensus 6 ~~~~l~tT~CVl~ELe~LG~~~~~Al~ia--K~f~~~kC~H~~~~~a~~CI~~~v~~~N~~~yiVATQD~~Lr~~LR~ip 83 (205)
++|=++.+.|-. +...-+.+....... +.+..+-.+.. .+..+-+..++...+-..-++...+.++.+.+. +.
T Consensus 31 ~lv~f~~~~C~~--C~~~~~~l~~l~~~~~~~~~~vv~v~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-i~ 105 (153)
T 2l5o_A 31 TLINFWFPSCPG--CVSEMPKIIKTANDYKNKNFQVLAVAQP--IDPIESVRQYVKDYGLPFTVMYDADKAVGQAFG-TQ 105 (153)
T ss_dssp EEEEEECTTCTT--HHHHHHHHHHHHHHGGGTTEEEEEEECT--TSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHT-CC
T ss_pred EEEEEECCCCcc--HHHHHHHHHHHHHHhccCCeEEEEEecC--CCCHHHHHHHHHHcCCCceEEcCchHHHHHHcC-CC
Confidence 466677777742 222222222211111 12444444331 234566777776655444456666778887775 67
Q ss_pred CCcEEEec
Q 043680 84 GVPLIFGL 91 (205)
Q Consensus 84 GVPliyi~ 91 (205)
|+|.+|+.
T Consensus 106 ~~P~~~li 113 (153)
T 2l5o_A 106 VYPTSVLI 113 (153)
T ss_dssp SSSEEEEE
T ss_pred ccCeEEEE
Confidence 99999874
Done!