Query 043681
Match_columns 101
No_of_seqs 105 out of 767
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:18:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043681.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043681hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0860 Synaptobrevin/VAMP-lik 100.0 1.7E-30 3.7E-35 170.7 12.2 83 15-97 27-109 (116)
2 KOG0859 Synaptobrevin/VAMP-lik 100.0 2.1E-30 4.5E-35 183.6 8.3 97 2-98 110-206 (217)
3 PF00957 Synaptobrevin: Synapt 100.0 2.2E-29 4.7E-34 159.2 11.2 85 16-100 2-86 (89)
4 KOG0861 SNARE protein YKT6, sy 99.8 9.1E-20 2E-24 127.5 7.0 72 2-73 122-193 (198)
5 KOG0862 Synaptobrevin/VAMP-lik 99.7 3.4E-17 7.3E-22 117.7 12.0 99 1-101 118-216 (216)
6 COG5143 SNC1 Synaptobrevin/VAM 99.6 1.1E-14 2.4E-19 103.2 8.0 69 10-78 122-190 (190)
7 COG5143 SNC1 Synaptobrevin/VAM 98.0 2.3E-05 4.9E-10 55.9 6.8 75 18-92 95-169 (190)
8 PF03908 Sec20: Sec20; InterP 97.4 0.0088 1.9E-07 37.7 11.0 82 17-98 8-89 (92)
9 PF00957 Synaptobrevin: Synapt 96.7 0.055 1.2E-06 33.5 10.0 77 16-96 9-85 (89)
10 PF03908 Sec20: Sec20; InterP 96.0 0.19 4.2E-06 31.5 10.6 78 20-100 4-87 (92)
11 KOG0810 SNARE protein Syntaxin 95.9 0.067 1.4E-06 40.7 8.1 80 16-97 205-287 (297)
12 KOG0811 SNARE protein PEP12/VA 95.6 0.24 5.1E-06 37.3 10.0 46 15-60 178-223 (269)
13 KOG3251 Golgi SNAP receptor co 94.9 0.48 1E-05 34.6 9.4 63 37-101 138-212 (213)
14 KOG0860 Synaptobrevin/VAMP-lik 94.7 0.78 1.7E-05 30.5 10.3 59 36-101 58-116 (116)
15 COG5074 t-SNARE complex subuni 93.6 1.1 2.4E-05 33.4 9.1 41 18-58 186-226 (280)
16 KOG1983 Tomosyn and related SN 91.5 0.21 4.6E-06 43.6 3.5 45 34-78 944-988 (993)
17 KOG1666 V-SNARE [Intracellular 91.3 4.5 9.7E-05 29.7 11.0 29 71-99 189-217 (220)
18 PF09753 Use1: Membrane fusion 89.3 6.9 0.00015 28.7 10.0 26 50-75 197-222 (251)
19 PF04799 Fzo_mitofusin: fzo-li 89.0 3.5 7.6E-05 29.1 7.4 53 17-69 109-161 (171)
20 KOG3208 SNARE protein GS28 [In 88.5 6.1 0.00013 29.1 8.5 20 81-100 209-228 (231)
21 KOG3385 V-SNARE [Intracellular 88.4 2.6 5.7E-05 28.0 6.0 37 15-51 34-70 (118)
22 PRK10884 SH3 domain-containing 87.5 8.8 0.00019 27.7 11.1 24 12-35 88-111 (206)
23 PRK01026 tetrahydromethanopter 85.0 6.6 0.00014 24.3 6.1 28 46-75 23-50 (77)
24 PF07798 DUF1640: Protein of u 84.9 11 0.00023 26.2 11.2 26 17-42 80-105 (177)
25 PTZ00478 Sec superfamily; Prov 84.7 4.9 0.00011 25.1 5.5 51 40-90 9-59 (81)
26 KOG0862 Synaptobrevin/VAMP-lik 83.6 14 0.0003 27.1 8.3 80 18-99 119-210 (216)
27 COG5325 t-SNARE complex subuni 83.6 17 0.00038 27.6 10.0 65 15-79 193-261 (283)
28 KOG3385 V-SNARE [Intracellular 83.3 6.3 0.00014 26.2 5.9 11 64-74 73-83 (118)
29 PF10779 XhlA: Haemolysin XhlA 83.2 7.5 0.00016 23.1 8.3 51 44-97 19-69 (71)
30 PRK09400 secE preprotein trans 82.6 6.7 0.00015 23.0 5.3 48 48-95 4-51 (61)
31 PF12352 V-SNARE_C: Snare regi 82.4 7.3 0.00016 22.4 7.6 59 15-73 6-64 (66)
32 KOG0812 SNARE protein SED5/Syn 82.0 21 0.00045 27.4 9.7 42 15-56 225-266 (311)
33 PF04210 MtrG: Tetrahydrometha 81.4 9.6 0.00021 23.1 5.9 29 45-75 19-47 (70)
34 TIGR01149 mtrG N5-methyltetrah 79.5 11 0.00025 22.8 6.2 28 46-75 20-47 (70)
35 PF05739 SNARE: SNARE domain; 77.9 10 0.00022 21.4 8.1 45 16-60 3-47 (63)
36 KOG0810 SNARE protein Syntaxin 76.8 7.6 0.00016 29.7 5.3 48 25-75 227-274 (297)
37 COG5074 t-SNARE complex subuni 76.6 19 0.00041 27.0 7.1 21 15-35 186-206 (280)
38 PF10717 ODV-E18: Occlusion-de 76.2 3.8 8.3E-05 25.7 2.9 18 82-99 27-44 (85)
39 KOG3202 SNARE protein TLG1/Syn 75.9 30 0.00064 25.6 9.4 27 17-43 137-163 (235)
40 PF03904 DUF334: Domain of unk 74.0 33 0.00072 25.4 11.2 27 3-29 80-109 (230)
41 KOG0809 SNARE protein TLG2/Syn 71.3 29 0.00063 26.7 7.2 42 17-58 218-259 (305)
42 smart00397 t_SNARE Helical reg 71.1 15 0.00033 20.3 6.3 46 15-60 10-55 (66)
43 TIGR00847 ccoS cytochrome oxid 70.4 6 0.00013 22.5 2.6 19 83-101 6-24 (51)
44 PF13800 Sigma_reg_N: Sigma fa 69.0 15 0.00033 22.8 4.6 16 67-82 4-19 (96)
45 cd00193 t_SNARE Soluble NSF (N 68.2 17 0.00038 19.7 6.3 45 16-60 5-49 (60)
46 PF13124 DUF3963: Protein of u 67.8 14 0.00029 19.7 3.4 23 74-96 17-39 (40)
47 KOG2678 Predicted membrane pro 67.0 34 0.00073 25.4 6.5 7 68-74 203-209 (244)
48 PF08693 SKG6: Transmembrane a 65.3 4.6 0.0001 21.9 1.4 10 90-99 24-33 (40)
49 PF15431 TMEM190: Transmembran 65.0 11 0.00024 25.1 3.4 18 84-101 66-83 (134)
50 PF05478 Prominin: Prominin; 64.9 91 0.002 26.8 10.2 13 78-90 410-422 (806)
51 PF03597 CcoS: Cytochrome oxid 64.9 9.1 0.0002 21.1 2.6 19 83-101 5-23 (45)
52 COG3197 FixS Uncharacterized p 64.8 6.4 0.00014 23.0 2.0 19 83-101 6-24 (58)
53 PRK10600 nitrate/nitrite senso 62.9 78 0.0017 25.4 10.9 21 23-43 67-87 (569)
54 COG2976 Uncharacterized protei 62.9 7.9 0.00017 28.2 2.6 28 74-101 15-42 (207)
55 PF13800 Sigma_reg_N: Sigma fa 62.7 21 0.00045 22.2 4.3 22 71-92 5-26 (96)
56 PF13228 DUF4037: Domain of un 62.4 37 0.00081 21.5 5.7 57 3-59 25-81 (100)
57 TIGR00327 secE_euk_arch protei 60.5 32 0.0007 20.2 4.8 42 55-96 7-48 (61)
58 KOG1693 emp24/gp25L/p24 family 60.5 27 0.00058 25.5 4.9 28 73-100 174-201 (209)
59 PHA03386 P10 fibrous body prot 60.3 16 0.00035 23.3 3.4 16 16-31 18-33 (94)
60 KOG1326 Membrane-associated pr 59.9 15 0.00032 32.7 4.1 29 70-98 1060-1088(1105)
61 PF10393 Matrilin_ccoil: Trime 59.7 23 0.00051 19.7 3.6 37 11-47 6-42 (47)
62 KOG3156 Uncharacterized membra 59.4 69 0.0015 23.6 10.0 24 18-41 124-147 (220)
63 PRK10404 hypothetical protein; 59.3 45 0.00097 21.4 9.2 45 15-62 7-51 (101)
64 KOG1691 emp24/gp25L/p24 family 58.7 69 0.0015 23.4 7.6 61 24-100 144-204 (210)
65 COG4064 MtrG Tetrahydromethano 58.6 39 0.00085 20.5 5.7 46 46-97 23-68 (75)
66 KOG3894 SNARE protein Syntaxin 57.2 90 0.0019 24.2 9.2 33 17-52 232-267 (316)
67 PF14004 DUF4227: Protein of u 57.0 21 0.00045 21.6 3.4 25 75-99 2-26 (71)
68 cd07912 Tweety_N N-terminal do 57.0 1E+02 0.0022 24.7 11.6 24 15-38 121-144 (418)
69 COG3524 KpsE Capsule polysacch 57.0 24 0.00052 27.5 4.5 18 16-33 229-246 (372)
70 PF03238 ESAG1: ESAG protein; 55.1 57 0.0012 24.1 5.9 57 34-90 6-62 (231)
71 PF08372 PRT_C: Plant phosphor 54.4 49 0.0011 23.0 5.3 32 49-80 63-94 (156)
72 KOG3498 Preprotein translocase 54.2 46 0.00099 19.9 4.9 34 48-81 5-38 (67)
73 PF06459 RR_TM4-6: Ryanodine R 54.0 27 0.00059 26.3 4.3 22 79-100 172-193 (274)
74 KOG3230 Vacuolar assembly/sort 53.0 32 0.00069 25.1 4.3 23 24-46 133-155 (224)
75 KOG3287 Membrane trafficking p 52.8 93 0.002 23.1 6.9 66 33-98 151-221 (236)
76 PHA03240 envelope glycoprotein 51.2 20 0.00043 26.6 3.1 14 82-95 215-228 (258)
77 PHA02650 hypothetical protein; 51.1 16 0.00036 22.7 2.3 14 83-96 53-66 (81)
78 KOG4782 Predicted membrane pro 50.8 61 0.0013 20.9 4.9 40 55-94 28-71 (108)
79 PRK10884 SH3 domain-containing 50.6 93 0.002 22.4 10.6 48 17-67 107-154 (206)
80 PF02932 Neur_chan_memb: Neuro 50.4 68 0.0015 20.8 7.2 51 49-99 182-237 (237)
81 PF14257 DUF4349: Domain of un 49.3 1E+02 0.0022 22.5 7.0 52 6-59 130-183 (262)
82 smart00096 UTG Uteroglobin. 49.1 52 0.0011 19.8 4.2 39 5-43 23-62 (69)
83 PHA02911 C-type lectin-like pr 49.0 45 0.00098 24.4 4.6 25 42-66 2-26 (213)
84 PF00306 ATP-synt_ab_C: ATP sy 48.6 32 0.00069 21.9 3.5 41 33-73 3-45 (113)
85 PF13044 DUF3904: Protein of u 48.5 22 0.00048 27.2 3.1 38 64-101 396-433 (436)
86 PHA02844 putative transmembran 47.8 34 0.00074 21.0 3.3 15 84-98 53-67 (75)
87 PF06143 Baculo_11_kDa: Baculo 47.5 29 0.00063 21.7 3.0 8 75-82 31-38 (84)
88 KOG1666 V-SNARE [Intracellular 47.4 1.1E+02 0.0024 22.5 6.9 35 65-99 179-213 (220)
89 PF07352 Phage_Mu_Gam: Bacteri 47.1 86 0.0019 21.0 6.1 51 16-66 9-60 (149)
90 PF05803 Chordopox_L2: Chordop 46.7 50 0.0011 20.8 4.0 26 73-98 59-84 (87)
91 PF06422 PDR_CDR: CDR ABC tran 45.8 35 0.00075 21.7 3.3 30 64-93 36-65 (103)
92 PF01099 Uteroglobin: Uteroglo 45.2 36 0.00077 19.9 3.1 40 4-43 20-60 (67)
93 KOG3065 SNAP-25 (synaptosome-a 45.1 97 0.0021 23.5 6.1 54 17-70 218-271 (273)
94 PF06695 Sm_multidrug_ex: Puta 44.5 81 0.0018 20.6 5.0 22 63-86 57-78 (121)
95 PF10031 DUF2273: Small integr 43.6 41 0.00088 18.9 3.0 12 75-86 2-13 (51)
96 PF08858 IDEAL: IDEAL domain; 42.7 51 0.0011 17.2 3.3 18 29-46 10-27 (37)
97 PF04510 DUF577: Family of unk 42.4 1.1E+02 0.0024 21.7 5.7 46 24-79 126-171 (174)
98 PF09771 Tmemb_18A: Transmembr 42.2 59 0.0013 21.8 4.1 39 62-100 10-48 (125)
99 PF14316 DUF4381: Domain of un 42.1 31 0.00066 23.1 2.8 21 80-100 21-41 (146)
100 PF06837 Fijivirus_P9-2: Fijiv 41.7 55 0.0012 23.7 4.1 40 22-61 21-62 (214)
101 KOG2678 Predicted membrane pro 41.6 1.5E+02 0.0032 22.1 6.9 22 49-70 191-212 (244)
102 TIGR03545 conserved hypothetic 41.2 84 0.0018 26.1 5.6 57 8-64 182-238 (555)
103 KOG4515 Uncharacterized conser 40.5 47 0.001 24.1 3.5 52 4-55 137-195 (217)
104 PF08006 DUF1700: Protein of u 40.3 1.2E+02 0.0026 20.8 9.5 44 2-53 6-49 (181)
105 PF12575 DUF3753: Protein of u 39.7 47 0.001 20.2 3.0 8 26-33 24-31 (72)
106 PRK12430 putative bifunctional 39.7 60 0.0013 25.8 4.3 45 45-89 101-145 (379)
107 PHA03054 IMV membrane protein; 39.6 53 0.0012 20.0 3.2 15 83-97 52-66 (72)
108 PF04799 Fzo_mitofusin: fzo-li 39.2 1.4E+02 0.003 21.1 6.4 53 20-72 101-157 (171)
109 PF04906 Tweety: Tweety; Inte 38.6 2E+02 0.0043 22.8 9.6 20 16-35 102-121 (406)
110 PRK10856 cytoskeletal protein 38.6 36 0.00077 26.3 2.9 6 96-101 128-133 (331)
111 PHA02819 hypothetical protein; 38.1 61 0.0013 19.7 3.3 11 86-96 53-63 (71)
112 PF10392 COG5: Golgi transport 37.9 1.2E+02 0.0025 20.0 5.6 60 16-75 32-95 (132)
113 PHA02975 hypothetical protein; 37.7 58 0.0013 19.7 3.1 10 87-96 52-61 (69)
114 PF00482 T2SF: Type II secreti 37.6 67 0.0014 19.3 3.7 22 22-43 31-54 (124)
115 PF06825 HSBP1: Heat shock fac 37.4 77 0.0017 18.1 3.5 41 19-62 12-52 (54)
116 PF12325 TMF_TATA_bd: TATA ele 36.9 82 0.0018 20.8 4.1 42 17-58 68-109 (120)
117 PF01105 EMP24_GP25L: emp24/gp 36.8 16 0.00034 24.2 0.7 32 47-78 128-159 (183)
118 PF04639 Baculo_E56: Baculovir 36.4 37 0.0008 26.1 2.7 22 79-100 276-297 (305)
119 PF13908 Shisa: Wnt and FGF in 36.3 27 0.00059 24.1 1.9 8 92-99 91-98 (179)
120 PF12420 DUF3671: Protein of u 35.9 1.2E+02 0.0026 19.5 5.0 36 48-91 21-56 (104)
121 PF15188 CCDC-167: Coiled-coil 35.8 1.1E+02 0.0024 19.1 6.7 54 17-74 12-65 (85)
122 PF00435 Spectrin: Spectrin re 35.7 91 0.002 18.1 7.2 53 2-58 16-68 (105)
123 PF03670 UPF0184: Uncharacteri 35.6 76 0.0016 19.8 3.5 29 47-75 42-70 (83)
124 PF11812 DUF3333: Domain of un 35.3 1.2E+02 0.0027 20.9 4.9 21 78-98 13-33 (155)
125 PF06936 Selenoprotein_S: Sele 35.2 13 0.00027 26.7 0.0 22 76-97 32-53 (190)
126 PF11598 COMP: Cartilage oligo 35.2 82 0.0018 17.4 4.1 25 16-40 7-31 (45)
127 PRK11546 zraP zinc resistance 35.0 85 0.0019 21.5 4.1 22 12-33 84-105 (143)
128 PF15013 CCSMST1: CCSMST1 fami 34.9 24 0.00051 21.8 1.2 19 75-96 29-47 (77)
129 PF10039 DUF2275: Predicted in 34.8 65 0.0014 23.6 3.6 22 74-96 28-49 (218)
130 TIGR01478 STEVOR variant surfa 34.6 38 0.00082 26.0 2.5 11 91-101 271-281 (295)
131 COG1459 PulF Type II secretory 34.1 1.9E+02 0.0042 22.9 6.4 18 10-27 88-105 (397)
132 PF04155 Ground-like: Ground-l 33.9 72 0.0016 18.9 3.3 12 28-39 10-21 (76)
133 PHA03164 hypothetical protein; 33.9 55 0.0012 20.3 2.7 17 83-99 60-76 (88)
134 COG1422 Predicted membrane pro 33.8 1.9E+02 0.004 21.1 9.9 69 15-98 70-141 (201)
135 PF11694 DUF3290: Protein of u 33.5 1.1E+02 0.0023 21.0 4.4 8 80-87 18-25 (149)
136 PTZ00370 STEVOR; Provisional 33.4 41 0.00088 25.8 2.5 12 90-101 266-277 (296)
137 PF05478 Prominin: Prominin; 33.3 3.2E+02 0.0069 23.6 10.7 10 63-72 401-410 (806)
138 PF12534 DUF3733: Leucine-rich 33.1 88 0.0019 18.6 3.4 26 74-99 21-46 (65)
139 PRK13530 arsenate reductase; P 33.0 58 0.0013 21.4 3.0 30 11-45 104-133 (133)
140 PF12718 Tropomyosin_1: Tropom 32.9 1.6E+02 0.0034 19.9 7.3 35 20-54 83-117 (143)
141 KOG3052 Cytochrome c1 [Energy 32.9 78 0.0017 24.1 3.8 23 79-101 274-296 (311)
142 PRK09793 methyl-accepting prot 32.7 1.6E+02 0.0034 23.7 5.9 52 14-65 461-512 (533)
143 PF07439 DUF1515: Protein of u 32.1 1.5E+02 0.0033 19.5 5.9 51 17-67 8-62 (112)
144 PF13040 DUF3901: Protein of u 31.9 62 0.0013 17.4 2.4 26 30-55 9-34 (40)
145 PF14992 TMCO5: TMCO5 family 31.8 2.3E+02 0.0051 21.6 10.6 12 72-83 210-221 (280)
146 PF12751 Vac7: Vacuolar segreg 31.7 55 0.0012 26.1 3.0 19 72-90 294-312 (387)
147 PRK15041 methyl-accepting chem 31.7 99 0.0021 25.1 4.6 19 47-65 498-516 (554)
148 COG4499 Predicted membrane pro 31.5 51 0.0011 26.5 2.8 20 78-98 218-237 (434)
149 PHA03395 p10 fibrous body prot 31.3 65 0.0014 20.3 2.8 15 16-30 17-31 (87)
150 PF06419 COG6: Conserved oligo 31.1 3.1E+02 0.0068 22.9 8.3 44 16-59 44-87 (618)
151 PHA02692 hypothetical protein; 31.0 45 0.00096 20.2 1.9 8 26-33 24-31 (70)
152 PF07889 DUF1664: Protein of u 30.9 1.7E+02 0.0036 19.6 7.2 22 19-40 45-66 (126)
153 COG1766 fliF Flagellar basal b 30.8 1.2E+02 0.0027 25.1 5.0 21 81-101 24-44 (545)
154 PLN03223 Polycystin cation cha 30.6 1.2E+02 0.0026 28.5 5.1 45 15-59 1579-1623(1634)
155 PF07139 DUF1387: Protein of u 30.6 1.8E+02 0.0039 22.5 5.5 54 3-59 184-239 (302)
156 PRK10753 transcriptional regul 30.0 78 0.0017 19.5 3.0 28 22-49 17-44 (90)
157 PF00429 TLV_coat: ENV polypro 29.9 1.1E+02 0.0024 25.3 4.6 23 16-38 441-463 (561)
158 PF14712 Snapin_Pallidin: Snap 29.6 1.3E+02 0.0029 18.1 5.3 18 24-41 24-41 (92)
159 PF11026 DUF2721: Protein of u 29.6 1.7E+02 0.0037 19.3 7.7 52 29-82 15-66 (130)
160 TIGR01006 polys_exp_MPA1 polys 29.5 1.1E+02 0.0023 21.6 4.1 15 76-90 17-31 (226)
161 COG0776 HimA Bacterial nucleoi 29.2 82 0.0018 20.0 3.0 27 23-49 19-45 (94)
162 PF12579 DUF3755: Protein of u 29.2 48 0.001 17.3 1.6 19 16-34 16-34 (35)
163 KOG0859 Synaptobrevin/VAMP-lik 29.0 1.7E+02 0.0038 21.4 4.9 52 25-76 126-177 (217)
164 PF15469 Sec5: Exocyst complex 28.7 1.9E+02 0.0042 19.7 6.6 50 17-66 40-89 (182)
165 PF02994 Transposase_22: L1 tr 28.7 1.2E+02 0.0027 23.6 4.5 12 47-58 153-164 (370)
166 PF08317 Spc7: Spc7 kinetochor 28.7 2.6E+02 0.0057 21.2 7.1 60 14-73 206-265 (325)
167 PRK10299 PhoPQ regulatory prot 28.6 29 0.00063 19.4 0.7 9 79-87 3-11 (47)
168 PRK14758 hypothetical protein; 28.3 85 0.0018 15.4 3.5 18 78-95 3-20 (27)
169 PF07851 TMPIT: TMPIT-like pro 28.0 2.9E+02 0.0064 21.5 6.4 31 69-99 115-145 (330)
170 PRK11875 psbT photosystem II r 27.9 93 0.002 15.9 2.5 9 83-91 7-15 (31)
171 PF05531 NPV_P10: Nucleopolyhe 27.6 1.1E+02 0.0024 18.7 3.3 18 16-33 17-34 (75)
172 PF12279 DUF3619: Protein of u 27.6 1.2E+02 0.0027 20.3 3.9 23 73-95 67-89 (131)
173 PRK06007 fliF flagellar MS-rin 27.6 1.6E+02 0.0036 24.2 5.2 19 82-100 25-43 (542)
174 PF03030 H_PPase: Inorganic H+ 27.6 2.4E+02 0.0052 24.2 6.3 40 55-98 23-62 (682)
175 PF12732 YtxH: YtxH-like prote 27.4 1.4E+02 0.003 17.5 5.2 13 26-38 31-43 (74)
176 PF02706 Wzz: Chain length det 27.2 21 0.00045 23.1 0.0 20 76-95 12-31 (152)
177 PF13706 PepSY_TM_3: PepSY-ass 26.8 1E+02 0.0022 15.8 3.2 14 80-93 8-21 (37)
178 PF11812 DUF3333: Domain of un 26.7 2.2E+02 0.0047 19.6 5.2 28 69-96 7-34 (155)
179 KOG2866 Uncharacterized conser 26.5 1.8E+02 0.0038 23.0 4.9 46 10-55 82-127 (349)
180 PF05542 DUF760: Protein of un 26.2 68 0.0015 19.7 2.2 28 17-44 13-41 (86)
181 KOG3003 Molecular chaperone of 26.1 2.8E+02 0.0061 20.7 6.0 50 17-67 71-120 (236)
182 PF00517 GP41: Retroviral enve 26.0 2.5E+02 0.0054 20.0 5.5 20 22-41 106-125 (204)
183 PTZ00238 expression site-assoc 25.8 2.5E+02 0.0055 21.7 5.5 57 34-90 103-159 (326)
184 PF11669 WBP-1: WW domain-bind 25.8 1.2E+02 0.0027 19.3 3.4 14 82-95 24-37 (102)
185 PF06103 DUF948: Bacterial pro 25.7 1.6E+02 0.0035 17.7 7.8 14 49-62 62-75 (90)
186 PHA02141 hypothetical protein 25.7 91 0.002 19.8 2.7 18 75-92 10-27 (105)
187 PF10979 DUF2786: Protein of u 25.6 87 0.0019 16.9 2.3 36 39-74 2-37 (43)
188 CHL00038 psbL photosystem II p 25.6 1.2E+02 0.0025 16.1 2.8 13 88-100 25-37 (38)
189 PHA03011 hypothetical protein; 25.6 2E+02 0.0044 18.8 5.2 50 5-56 68-117 (120)
190 COG3074 Uncharacterized protei 25.6 1.7E+02 0.0036 17.9 7.1 50 15-64 16-65 (79)
191 PRK15348 type III secretion sy 25.5 1.3E+02 0.0028 22.4 4.0 26 68-93 209-234 (249)
192 PRK10381 LPS O-antigen length 25.5 1.4E+02 0.003 23.4 4.3 19 75-93 35-53 (377)
193 PRK00199 ihfB integration host 25.3 1.1E+02 0.0023 18.8 3.0 26 23-48 19-44 (94)
194 TIGR01837 PHA_granule_1 poly(h 25.2 2E+02 0.0044 18.7 6.2 36 25-60 71-111 (118)
195 KOG1510 RNA polymerase II holo 24.9 1.5E+02 0.0032 20.3 3.8 29 16-44 2-30 (139)
196 KOG1696 60s ribosomal protein 24.8 2.7E+02 0.0058 20.0 5.4 55 2-56 101-161 (193)
197 PF12777 MT: Microtubule-bindi 24.7 2.1E+02 0.0045 21.9 5.1 12 86-97 311-322 (344)
198 PF10504 DUF2452: Protein of u 24.6 2.5E+02 0.0055 19.6 6.0 47 17-69 30-76 (159)
199 PF03310 Cauli_DNA-bind: Cauli 24.5 2.2E+02 0.0049 19.0 6.2 43 21-63 3-45 (121)
200 PF08614 ATG16: Autophagy prot 24.4 1.5E+02 0.0033 20.7 4.0 62 16-77 73-134 (194)
201 PF02697 DUF217: Uncharacteriz 24.2 1.7E+02 0.0037 17.5 3.8 44 35-78 26-70 (71)
202 PF09548 Spore_III_AB: Stage I 24.0 1.8E+02 0.0039 19.9 4.3 7 81-87 152-158 (170)
203 PF12455 Dynactin: Dynein asso 23.9 3.1E+02 0.0067 20.4 6.6 57 17-74 216-273 (274)
204 PF04100 Vps53_N: Vps53-like, 23.9 2E+02 0.0043 22.6 4.9 38 3-40 143-180 (383)
205 PF06072 Herpes_US9: Alphaherp 23.7 1.7E+02 0.0036 17.2 5.6 10 58-67 8-17 (60)
206 PF08900 DUF1845: Domain of un 23.6 2E+02 0.0043 20.8 4.6 30 11-40 56-85 (217)
207 PF14914 LRRC37AB_C: LRRC37A/B 23.6 97 0.0021 21.5 2.7 21 79-99 118-138 (154)
208 PF10158 LOH1CR12: Tumour supp 23.3 2.4E+02 0.0052 18.9 4.9 21 17-37 87-107 (131)
209 PRK13453 F0F1 ATP synthase sub 23.2 90 0.0019 21.5 2.6 10 91-100 30-39 (173)
210 TIGR00987 himA integration hos 23.0 1.2E+02 0.0027 18.6 3.0 27 22-48 18-44 (96)
211 PLN02255 H(+) -translocating i 22.7 2.9E+02 0.0063 24.1 5.9 38 54-95 70-107 (765)
212 PHA02902 putative IMV membrane 22.6 1.2E+02 0.0026 18.2 2.7 11 86-96 12-22 (70)
213 PHA03029 hypothetical protein; 22.5 2E+02 0.0044 17.8 5.0 25 75-99 53-77 (92)
214 COG5547 Small integral membran 22.5 1.2E+02 0.0026 17.8 2.6 11 76-86 3-13 (62)
215 TIGR02338 gimC_beta prefoldin, 22.4 2.2E+02 0.0047 18.0 4.5 32 43-74 65-96 (110)
216 PRK00753 psbL photosystem II r 22.2 1.4E+02 0.003 15.9 2.6 14 87-100 25-38 (39)
217 PF15061 DUF4538: Domain of un 22.2 74 0.0016 18.6 1.7 20 78-97 3-22 (58)
218 PF02994 Transposase_22: L1 tr 22.1 2.7E+02 0.0058 21.7 5.3 20 45-64 144-163 (370)
219 PF03907 Spo7: Spo7-like prote 22.1 3.2E+02 0.007 19.9 5.7 34 64-98 17-50 (207)
220 PF01998 DUF131: Protein of un 21.9 1.9E+02 0.004 17.1 3.4 16 84-99 48-63 (64)
221 COG4640 Predicted membrane pro 21.8 85 0.0018 25.4 2.4 6 93-98 64-69 (465)
222 PF06238 Borrelia_lipo_2: Borr 21.8 2.4E+02 0.0053 18.4 5.0 12 26-37 61-72 (111)
223 PRK14710 hypothetical protein; 21.8 1.4E+02 0.003 18.3 2.9 12 82-93 11-22 (86)
224 KOG1602 Cis-prenyltransferase 21.8 1.2E+02 0.0026 23.0 3.1 55 17-71 92-149 (271)
225 PF04612 T2SM: Type II secreti 21.6 31 0.00067 23.0 0.0 6 85-90 20-25 (160)
226 TIGR00988 hip integration host 21.1 1.4E+02 0.0031 18.1 3.0 26 23-48 19-44 (94)
227 cd00633 Secretoglobin Secretog 21.0 1.8E+02 0.0039 16.7 4.3 40 3-42 19-59 (67)
228 PF05915 DUF872: Eukaryotic pr 20.9 40 0.00087 22.1 0.5 10 77-86 41-50 (115)
229 PTZ00478 Sec superfamily; Prov 20.9 2.2E+02 0.0048 17.7 4.9 49 51-99 13-65 (81)
230 PRK15041 methyl-accepting chem 20.8 4.6E+02 0.0099 21.2 12.8 26 19-45 122-147 (554)
231 CHL00031 psbT photosystem II p 20.7 1.1E+02 0.0023 15.9 1.9 6 84-89 8-13 (33)
232 PF14735 HAUS4: HAUS augmin-li 20.4 3.6E+02 0.0078 19.9 7.8 65 8-76 166-230 (238)
233 PF06679 DUF1180: Protein of u 20.4 1.2E+02 0.0026 21.2 2.8 17 83-99 99-115 (163)
234 PF11221 Med21: Subunit 21 of 20.4 2.2E+02 0.0047 19.0 4.0 37 16-53 2-38 (144)
235 PF08999 SP_C-Propep: Surfacta 20.3 1.7E+02 0.0038 18.3 3.2 13 79-91 32-44 (93)
236 PF11471 Sugarporin_N: Maltopo 20.2 1.2E+02 0.0027 17.5 2.4 27 44-70 31-57 (60)
237 COG1463 Ttg2C ABC-type transpo 20.2 4.1E+02 0.0088 20.4 7.1 51 18-68 212-262 (359)
238 PRK07668 hypothetical protein; 20.1 3.8E+02 0.0083 20.0 6.5 55 23-80 24-78 (254)
239 PF06789 UPF0258: Uncharacteri 20.1 63 0.0014 22.6 1.3 15 64-78 120-134 (159)
240 PHA00350 putative assembly pro 20.0 82 0.0018 25.1 2.1 30 70-100 215-244 (399)
No 1
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.7e-30 Score=170.67 Aligned_cols=83 Identities=24% Similarity=0.360 Sum_probs=76.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 043681 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFIVF 94 (101)
Q Consensus 15 ~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv~~~i 94 (101)
..+++.++|+||+||.+||++|++|+|||||+|++|++||+.|++.|..|.++|.+++|+|||+|+|+.+++++++++++
T Consensus 27 ~~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l 106 (116)
T KOG0860|consen 27 ANDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILL 106 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999998877776554
Q ss_pred HHH
Q 043681 95 WLK 97 (101)
Q Consensus 95 ~i~ 97 (101)
+++
T Consensus 107 ~ii 109 (116)
T KOG0860|consen 107 VVI 109 (116)
T ss_pred HHH
Confidence 433
No 2
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.1e-30 Score=183.58 Aligned_cols=97 Identities=22% Similarity=0.392 Sum_probs=91.8
Q ss_pred hHHHHHHHhCCcHHHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHH
Q 043681 2 FIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWA 81 (101)
Q Consensus 2 ~i~~~~~~y~d~~~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k 81 (101)
.+++.|..|.+.++.|+++++++||+||+++|.+|||++++|||+||.|++||+.|+++|..|++++++++|+|||+|+|
T Consensus 110 vL~qqm~y~s~~p~id~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~mw~~n~k 189 (217)
T KOG0859|consen 110 VLKQQMQYCSEHPEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKMWFQNMK 189 (217)
T ss_pred HHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 58899999976667999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043681 82 PVAIVLGVVFIVFWLKT 98 (101)
Q Consensus 82 ~~iii~~vv~~~i~i~~ 98 (101)
++++++++++++++++.
T Consensus 190 l~~iv~~~~~~~iyiiv 206 (217)
T KOG0859|consen 190 LKLIVLGVSISLIYIIV 206 (217)
T ss_pred eehhhhhHHHHHHHHHH
Confidence 99999999988888764
No 3
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=99.96 E-value=2.2e-29 Score=159.17 Aligned_cols=85 Identities=22% Similarity=0.481 Sum_probs=81.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 043681 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFIVFW 95 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv~~~i~ 95 (101)
+|++.+++++|++|+++|.+|++++++|||+|++|+++|++|++.|..|+++|++++|++||++||++++++++++++++
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~ 81 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIIL 81 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHhh
Q 043681 96 LKTKL 100 (101)
Q Consensus 96 i~~~~ 100 (101)
++++.
T Consensus 82 ~i~~~ 86 (89)
T PF00957_consen 82 IIIIV 86 (89)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 88763
No 4
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=9.1e-20 Score=127.52 Aligned_cols=72 Identities=29% Similarity=0.475 Sum_probs=69.5
Q ss_pred hHHHHHHHhCCcHHHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHH
Q 043681 2 FIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNR 73 (101)
Q Consensus 2 ~i~~~~~~y~d~~~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r 73 (101)
+|.....+|+||.+.|++.++|+||||+|.||++.|+.+|+|||+||+|++||+.|+.+|+.|.++|+|-++
T Consensus 122 ~L~~~l~kyqdP~ead~l~kvQ~EldETKiiLhkTiesVL~RgEKLDdLV~KSe~Ls~qSKmfYKsAKK~Ns 193 (198)
T KOG0861|consen 122 YLDTLLSKYQDPAEADPLLKVQNELDETKIILHKTIESVLERGEKLDDLVSKSENLSLQSKMFYKSAKKTNS 193 (198)
T ss_pred hHHHHHHHhcChhhhChHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 588899999999999999999999999999999999999999999999999999999999999999998763
No 5
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=3.4e-17 Score=117.67 Aligned_cols=99 Identities=52% Similarity=0.757 Sum_probs=88.2
Q ss_pred ChHHHHHHHhCCcHHHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhH
Q 043681 1 TFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKW 80 (101)
Q Consensus 1 ~~i~~~~~~y~d~~~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~ 80 (101)
+|||+..+.|+|++..+.+.++++++.+|+.+|.+||+.++.|||.|+.|...+.+|+..|+.+.++|+.++++..+.+|
T Consensus 118 ~~IQk~Kk~ynd~r~~~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~ 197 (216)
T KOG0862|consen 118 TFIQKTKKRYNDTRSQRNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKY 197 (216)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHhhC
Q 043681 81 APVAIVLGVVFIVFWLKTKLW 101 (101)
Q Consensus 81 k~~iii~~vv~~~i~i~~~~~ 101 (101)
. .+.++.+++++|+.|++|
T Consensus 198 a--a~~~~~~~l~f~~~f~~~ 216 (216)
T KOG0862|consen 198 A--AYVVFFVLLLFYVRFIAC 216 (216)
T ss_pred H--HHHHHHHHHHHHHHHhhC
Confidence 8 334445555555555554
No 6
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=99.57 E-value=1.1e-14 Score=103.20 Aligned_cols=69 Identities=33% Similarity=0.510 Sum_probs=67.8
Q ss_pred hCCcHHHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Q 043681 10 YQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIR 78 (101)
Q Consensus 10 y~d~~~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~ 78 (101)
|+||...|++.+++.+++||+.+|.+||+++|.|||+|+.|+++|+.|...|+.|.++|++.+..+||+
T Consensus 122 y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~~~~k~akk~n~~~~~~ 190 (190)
T COG5143 122 YRDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSKMFPKSAKKSNLCCLIN 190 (190)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeC
Confidence 999999999999999999999999999999999999999999999999999999999999999999984
No 7
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=98.03 E-value=2.3e-05 Score=55.94 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 043681 18 NIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFI 92 (101)
Q Consensus 18 ki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv~~ 92 (101)
+-..++...++++++|+.|+++.+++|++.....++..+++.++..|++-+.+...++|||.-|+-.+++....+
T Consensus 95 ~s~~~~~~~d~~~~~~~~~~d~~~e~~y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L 169 (190)
T COG5143 95 KSSALEQLIDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSIL 169 (190)
T ss_pred hhhhHhhcccCccchhhhhHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 466788889999999999999999999999999999999999999999999999999999999987776554443
No 8
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=97.40 E-value=0.0088 Score=37.68 Aligned_cols=82 Identities=10% Similarity=0.061 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 043681 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFIVFWL 96 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv~~~i~i 96 (101)
+.+......+.+.-+-...|.+.+-+..+.|..+.+.=..+.+.-..-.+--+++.|+.+...+-+++.+++++++++||
T Consensus 8 ~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~yI 87 (92)
T PF03908_consen 8 ESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVLYI 87 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555555555444444444444443333444456777778877777776666666666666
Q ss_pred HH
Q 043681 97 KT 98 (101)
Q Consensus 97 ~~ 98 (101)
++
T Consensus 88 ~~ 89 (92)
T PF03908_consen 88 LW 89 (92)
T ss_pred hh
Confidence 54
No 9
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=96.73 E-value=0.055 Score=33.55 Aligned_cols=77 Identities=8% Similarity=0.182 Sum_probs=52.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 043681 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFIVFW 95 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv~~~i~ 95 (101)
.+.+..+++.+.+--+-+.++-+++=+=.++-+.|.+.|+.....|...++...-- .++-+-..++++++++++++
T Consensus 9 ~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~----~~k~~~i~~~iv~~~~~~i~ 84 (89)
T PF00957_consen 9 QEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWR----NYKLYIIIIIIVIIIILIII 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHhHHhhhhhhhhHHH
Confidence 46677777777777777777777777777778888888888888888876655222 22344455555555555554
Q ss_pred H
Q 043681 96 L 96 (101)
Q Consensus 96 i 96 (101)
+
T Consensus 85 ~ 85 (89)
T PF00957_consen 85 I 85 (89)
T ss_dssp H
T ss_pred H
Confidence 4
No 10
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=96.00 E-value=0.19 Score=31.49 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHH------HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 043681 20 AKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYA------DKAKDLNRQALIRKWAPVAIVLGVVFIV 93 (101)
Q Consensus 20 ~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~------~~a~kl~r~~~w~~~k~~iii~~vv~~~ 93 (101)
..+-+.+..++..|.+.+++- ...++.|.+.|+.|......|. ..|+++=+..-.+...=.+++.+.+.++
T Consensus 4 ~~vT~~L~rt~~~m~~ev~~s---~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f 80 (92)
T PF03908_consen 4 SDVTESLRRTRQMMAQEVERS---ELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFF 80 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456778889999999888755 5678889999988887766654 4466777777777777777777777777
Q ss_pred HHHHHhh
Q 043681 94 FWLKTKL 100 (101)
Q Consensus 94 i~i~~~~ 100 (101)
++++.|.
T Consensus 81 ~~~v~yI 87 (92)
T PF03908_consen 81 LLVVLYI 87 (92)
T ss_pred HHHHHHH
Confidence 7776663
No 11
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.90 E-value=0.067 Score=40.73 Aligned_cols=80 Identities=23% Similarity=0.344 Sum_probs=52.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhh---hhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 043681 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSS---RLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFI 92 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~---~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv~~ 92 (101)
.+.+-++...+.|++++-.+=--.+-..||.++.++...+ +--..+..=-++|.+..++.- .+|.++|+++++++
T Consensus 205 h~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaR--K~k~i~ii~~iii~ 282 (297)
T KOG0810|consen 205 HDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKAR--KWKIIIIIILIIII 282 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hceeeeehHHHHHH
Confidence 4667888888888888877777777788888877766544 334455555666777776663 44555555555554
Q ss_pred HHHHH
Q 043681 93 VFWLK 97 (101)
Q Consensus 93 ~i~i~ 97 (101)
+++++
T Consensus 283 ~v~v~ 287 (297)
T KOG0810|consen 283 VVLVV 287 (297)
T ss_pred HHHhh
Confidence 44443
No 12
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.61 E-value=0.24 Score=37.31 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=39.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHh
Q 043681 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60 (101)
Q Consensus 15 ~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~ 60 (101)
....+.+++.++.||..|+.+=-.-+=+.|+.+|.+++..+..+..
T Consensus 178 R~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~n 223 (269)
T KOG0811|consen 178 REQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVN 223 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Confidence 3577899999999999999988888889999999998888777654
No 13
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.91 E-value=0.48 Score=34.57 Aligned_cols=63 Identities=13% Similarity=0.143 Sum_probs=29.2
Q ss_pred HHHHHhccc-chhhhhhhhhhhhHhhHHHHHH----------HHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHhhC
Q 043681 37 VQEVLGVGE-KLDQVSEMSSRLTSESRIYADK----------AKDLNRQALIRKWAPVAIVLGVVFI-VFWLKTKLW 101 (101)
Q Consensus 37 i~~il~Rge-~Le~L~~ks~~L~~~s~~f~~~----------a~kl~r~~~w~~~k~~iii~~vv~~-~i~i~~~~~ 101 (101)
+|.+|.+|. -+|+|+++-..|+..-+.+..- -+-+.|+..= =|++.++|+++|+ +++++++||
T Consensus 138 lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~--Dk~iF~~G~i~~~v~~yl~~~wl 212 (213)
T KOG3251|consen 138 LDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVRE--DKIIFYGGVILTLVIMYLFYRWL 212 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444443 2455555555555444443332 2344555432 2444444444433 456666666
No 14
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=0.78 Score=30.48 Aligned_cols=59 Identities=17% Similarity=0.239 Sum_probs=34.9
Q ss_pred hHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Q 043681 36 NVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFIVFWLKTKLW 101 (101)
Q Consensus 36 Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv~~~i~i~~~~~ 101 (101)
.++.+- +|-|.|.+.|+..+..|...++.===-+. +..-..+++++++++++++.+|.|
T Consensus 58 kL~~L~---drad~L~~~as~F~~~A~klkrk~wWkn~----Km~~il~~v~~i~l~iiii~~~~~ 116 (116)
T KOG0860|consen 58 KLDELD---DRADQLQAGASQFEKTAVKLKRKMWWKNC----KMRIILGLVIIILLVVIIIYIFLW 116 (116)
T ss_pred hHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444444 44566777888888888776543222222 223445566666667777777665
No 15
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=93.59 E-value=1.1 Score=33.42 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhh
Q 043681 18 NIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLT 58 (101)
Q Consensus 18 ki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~ 58 (101)
.+.++...+.|..+...+=-+.+.++.|..|.++...++-+
T Consensus 186 ~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~ 226 (280)
T COG5074 186 EIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQ 226 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHH
Confidence 34555555555555555555677888888888877766554
No 16
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.50 E-value=0.21 Score=43.57 Aligned_cols=45 Identities=16% Similarity=0.382 Sum_probs=38.3
Q ss_pred HHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Q 043681 34 TRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIR 78 (101)
Q Consensus 34 ~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~ 78 (101)
..--+.+.+|||+|+.++++|+++.+.|..|...|.++.-++-.+
T Consensus 944 ~~a~~~l~e~~erL~~~e~~t~~~~~sa~~~s~~a~e~~~~~~~k 988 (993)
T KOG1983|consen 944 SGALQPLNERGERLSRLEERTAEMANSAKQFSSTAHELTGKYKVK 988 (993)
T ss_pred hhcchhhHhhccccchHHHHHHHhhccHHHHHHHHHHHHhhhhhh
Confidence 334567889999999999999999999999999999988665444
No 17
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.31 E-value=4.5 Score=29.65 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=18.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 043681 71 LNRQALIRKWAPVAIVLGVVFIVFWLKTK 99 (101)
Q Consensus 71 l~r~~~w~~~k~~iii~~vv~~~i~i~~~ 99 (101)
..|++.-..+-.++|+++.+++++++.|+
T Consensus 189 M~RR~~~nk~~~~aii~~l~~~il~ilY~ 217 (220)
T KOG1666|consen 189 MTRRLIRNKFTLTAIIALLVLAILLILYS 217 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666777777777777776665
No 18
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=89.32 E-value=6.9 Score=28.66 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=13.6
Q ss_pred hhhhhhhhhHhhHHHHHHHHHHHHHH
Q 043681 50 VSEMSSRLTSESRIYADKAKDLNRQA 75 (101)
Q Consensus 50 L~~ks~~L~~~s~~f~~~a~kl~r~~ 75 (101)
|..-.+.+..+.......+.+++...
T Consensus 197 L~~~~~~~d~n~~~l~~~~~rl~~~~ 222 (251)
T PF09753_consen 197 LDRTEEGLDRNLSSLKRESKRLKEHS 222 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555666666665543
No 19
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=89.05 E-value=3.5 Score=29.14 Aligned_cols=53 Identities=9% Similarity=0.227 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHH
Q 043681 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAK 69 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~ 69 (101)
.-...+..+|++++.-|.+.|+.+-..-++||.+..++..|.+.|..+...=.
T Consensus 109 ~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~ 161 (171)
T PF04799_consen 109 STFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELE 161 (171)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999888888888877776655433
No 20
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.51 E-value=6.1 Score=29.14 Aligned_cols=20 Identities=15% Similarity=0.049 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 043681 81 APVAIVLGVVFIVFWLKTKL 100 (101)
Q Consensus 81 k~~iii~~vv~~~i~i~~~~ 100 (101)
|=.+|+++|+.+-.++.+|+
T Consensus 209 rdslILa~Vis~C~llllfy 228 (231)
T KOG3208|consen 209 RDSLILAAVISVCTLLLLFY 228 (231)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 44556655554333333333
No 21
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.38 E-value=2.6 Score=28.01 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=22.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhh
Q 043681 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVS 51 (101)
Q Consensus 15 ~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~ 51 (101)
+...+..+++.|.-.|..-.+--+++=....-|+.+.
T Consensus 34 Nee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~md 70 (118)
T KOG3385|consen 34 NEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMD 70 (118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 3466778888888888776665555444444444443
No 22
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.54 E-value=8.8 Score=27.73 Aligned_cols=24 Identities=4% Similarity=0.230 Sum_probs=16.1
Q ss_pred CcHHHhHHHHHHHHHHHHHHHHHH
Q 043681 12 DTRTQRNIAKLNDELYEVHQIMTR 35 (101)
Q Consensus 12 d~~~~dki~~~~~~v~ev~~im~~ 35 (101)
.|+..+.+.+++.++++.++-+.+
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777888777777654433
No 23
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=84.97 E-value=6.6 Score=24.26 Aligned_cols=28 Identities=21% Similarity=0.432 Sum_probs=18.8
Q ss_pred chhhhhhhhhhhhHhhHHHHHHHHHHHHHH
Q 043681 46 KLDQVSEMSSRLTSESRIYADKAKDLNRQA 75 (101)
Q Consensus 46 ~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~ 75 (101)
|||.+++|-|. ..|.-|++..+++=|.-
T Consensus 23 rLD~iEeKVEf--tn~Ei~Qr~GkkvGRDi 50 (77)
T PRK01026 23 RLDEIEEKVEF--TNAEIFQRIGKKVGRDI 50 (77)
T ss_pred HHHHHHHHHHH--HHHHHHHHHhHHhhhHH
Confidence 45566666653 35677888888888764
No 24
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=84.87 E-value=11 Score=26.25 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHh
Q 043681 17 RNIAKLNDELYEVHQIMTRNVQEVLG 42 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~Ni~~il~ 42 (101)
....+++.+++.++.-+.+-|+++-.
T Consensus 80 ~~~e~L~~eie~l~~~L~~ei~~l~a 105 (177)
T PF07798_consen 80 SENEKLQREIEKLRQELREEINKLRA 105 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888877776543
No 25
>PTZ00478 Sec superfamily; Provisional
Probab=84.75 E-value=4.9 Score=25.09 Aligned_cols=51 Identities=8% Similarity=0.053 Sum_probs=33.6
Q ss_pred HHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 043681 40 VLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVV 90 (101)
Q Consensus 40 il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv 90 (101)
+.+..+.++.+.+...+.-..|..|-+.++|=.|+-..+-.+...+-.++.
T Consensus 9 ~~~~m~~~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kiakat~iGf~im 59 (81)
T PTZ00478 9 LTDKSNPVGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIAYACSVGFFIM 59 (81)
T ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 344455566777777777777777888888777777766666554443333
No 26
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.63 E-value=14 Score=27.10 Aligned_cols=80 Identities=15% Similarity=0.102 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhcc--------cchhhhhhhh---hhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 043681 18 NIAKLNDELYEVHQIMTRNVQEVLGVG--------EKLDQVSEMS---SRLTSESRIYADKAKDLNRQALIRKWAPVAIV 86 (101)
Q Consensus 18 ki~~~~~~v~ev~~im~~Ni~~il~Rg--------e~Le~L~~ks---~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii 86 (101)
-|.+++..-.+++. ++|+.++.+-- +.||++-.+- +.|++.|..+...|++-+..+--=|.+..+.-
T Consensus 119 ~IQk~Kk~ynd~r~--~~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~ 196 (216)
T KOG0862|consen 119 FIQKTKKRYNDTRS--QRNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRK 196 (216)
T ss_pred HHHHHHHHhcCcHH--HHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHH
Confidence 46777888888765 56666555433 3345554443 55567777888888777777665566655444
Q ss_pred -HHHHHHHHHHHHh
Q 043681 87 -LGVVFIVFWLKTK 99 (101)
Q Consensus 87 -~~vv~~~i~i~~~ 99 (101)
+..++++.++.+|
T Consensus 197 ~aa~~~~~~~l~f~ 210 (216)
T KOG0862|consen 197 YAAYVVFFVLLLFY 210 (216)
T ss_pred HHHHHHHHHHHHHH
Confidence 3444444444444
No 27
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=83.62 E-value=17 Score=27.61 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=43.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhh----hhHhhHHHHHHHHHHHHHHHHHh
Q 043681 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSR----LTSESRIYADKAKDLNRQALIRK 79 (101)
Q Consensus 15 ~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~----L~~~s~~f~~~a~kl~r~~~w~~ 79 (101)
....+.++..-+.|+..|-++=-.-+.+.|+-.+.++..-+. +++.++...+.-.--||..-|+-
T Consensus 193 r~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~ 261 (283)
T COG5325 193 RDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRF 261 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchh
Confidence 346788888889999888888888888999888877655444 44444455444444444444443
No 28
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.30 E-value=6.3 Score=26.22 Aligned_cols=11 Identities=9% Similarity=0.147 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 043681 64 YADKAKDLNRQ 74 (101)
Q Consensus 64 f~~~a~kl~r~ 74 (101)
|...+-.|.+-
T Consensus 73 fdsts~~L~gt 83 (118)
T KOG3385|consen 73 FDSTSGFLSGT 83 (118)
T ss_pred hhhhHHHHHHH
Confidence 44444444433
No 29
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=83.22 E-value=7.5 Score=23.12 Aligned_cols=51 Identities=8% Similarity=0.179 Sum_probs=25.9
Q ss_pred ccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 043681 44 GEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFIVFWLK 97 (101)
Q Consensus 44 ge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv~~~i~i~ 97 (101)
.++++.|+..++.+......-..+=.++.-...| -+.+++|+++.+++.++
T Consensus 19 ~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW---~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 19 EERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW---IWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3445555555555555545555554555544422 23355566665555443
No 30
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=82.60 E-value=6.7 Score=23.03 Aligned_cols=48 Identities=6% Similarity=0.090 Sum_probs=29.6
Q ss_pred hhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 043681 48 DQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFIVFW 95 (101)
Q Consensus 48 e~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv~~~i~ 95 (101)
+.+.+...++-.++..+-+.|+|=.++-.++-.+...+..+++-++-+
T Consensus 4 ~~~~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG~~i~G~iGf 51 (61)
T PRK09400 4 NKLQENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGILLIGLIGF 51 (61)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666677777777777777777776665554444444433
No 31
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=82.39 E-value=7.3 Score=22.42 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=46.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHH
Q 043681 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNR 73 (101)
Q Consensus 15 ~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r 73 (101)
+.+.+......++++.++-.+-.+.+-..++.|....++..++.+.-..-.+--+++.|
T Consensus 6 e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~r 64 (66)
T PF12352_consen 6 ESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISR 64 (66)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHc
Confidence 56788899999999999999999999999999999888888777655544444444443
No 32
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.02 E-value=21 Score=27.43 Aligned_cols=42 Identities=10% Similarity=0.214 Sum_probs=34.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhh
Q 043681 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSR 56 (101)
Q Consensus 15 ~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~ 56 (101)
..+.+..+.+.+.|+=+||.+=-..+=+.||-+.-+++..++
T Consensus 225 R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~d 266 (311)
T KOG0812|consen 225 RAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDD 266 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 357899999999999999999888888999876666655543
No 33
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=81.37 E-value=9.6 Score=23.10 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=18.7
Q ss_pred cchhhhhhhhhhhhHhhHHHHHHHHHHHHHH
Q 043681 45 EKLDQVSEMSSRLTSESRIYADKAKDLNRQA 75 (101)
Q Consensus 45 e~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~ 75 (101)
+||+.+++|-|. ..|.-+++..+++=|.-
T Consensus 19 ~rLd~iEeKvEf--~~~Ei~Qr~GkkiGRDi 47 (70)
T PF04210_consen 19 KRLDEIEEKVEF--TNAEIAQRAGKKIGRDI 47 (70)
T ss_pred HHHHHHHHHHHh--HHHHHHHHHhHHhhhHH
Confidence 345555666553 34667888888887664
No 34
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=79.53 E-value=11 Score=22.78 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=18.3
Q ss_pred chhhhhhhhhhhhHhhHHHHHHHHHHHHHH
Q 043681 46 KLDQVSEMSSRLTSESRIYADKAKDLNRQA 75 (101)
Q Consensus 46 ~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~ 75 (101)
|||.+++|-|. ..|.-|++..+++=|..
T Consensus 20 rLd~iEeKVEf--~~~E~~Qr~Gkk~GRDi 47 (70)
T TIGR01149 20 RLDEIEEKVEF--VNGEVAQRIGKKVGRDI 47 (70)
T ss_pred HHHHHHHHHHH--HHHHHHHHHhHHhhhHH
Confidence 45555666553 34667888888887664
No 35
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=77.88 E-value=10 Score=21.36 Aligned_cols=45 Identities=20% Similarity=0.329 Sum_probs=37.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHh
Q 043681 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~ 60 (101)
.+.+..+...+.++++++.+==+.+-+.|+-|+.+.+..+.-...
T Consensus 3 d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~ 47 (63)
T PF05739_consen 3 DEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANEN 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHH
Confidence 467899999999999988888888888999999998887755543
No 36
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.83 E-value=7.6 Score=29.67 Aligned_cols=48 Identities=15% Similarity=0.091 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHH
Q 043681 25 ELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQA 75 (101)
Q Consensus 25 ~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~ 75 (101)
.+=+-++-|.++|+.=.+++ .+-++++.+=-..|..++++|||-+.-.
T Consensus 227 ~LVe~QgEmvd~IE~nV~~A---~~~V~~g~~~~~kAv~~qkkaRK~k~i~ 274 (297)
T KOG0810|consen 227 VLVESQGEMVDRIENNVENA---VDYVEQGVDHLKKAVKYQKKARKWKIII 274 (297)
T ss_pred HHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhceeee
Confidence 34455777888888777666 3455555555566788888887766444
No 37
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=76.58 E-value=19 Score=27.03 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=10.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHH
Q 043681 15 TQRNIAKLNDELYEVHQIMTR 35 (101)
Q Consensus 15 ~~dki~~~~~~v~ev~~im~~ 35 (101)
+.-++.+.-+++.+.-+-|.+
T Consensus 186 ~ikkiEkt~ael~qLfndm~~ 206 (280)
T COG5074 186 EIKKIEKTMAELTQLFNDMEE 206 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554443
No 38
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=76.15 E-value=3.8 Score=25.70 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 043681 82 PVAIVLGVVFIVFWLKTK 99 (101)
Q Consensus 82 ~~iii~~vv~~~i~i~~~ 99 (101)
+..|++++|+++++|.+|
T Consensus 27 lMtILivLVIIiLlImlf 44 (85)
T PF10717_consen 27 LMTILIVLVIIILLIMLF 44 (85)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666666666666665
No 39
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.85 E-value=30 Score=25.64 Aligned_cols=27 Identities=7% Similarity=0.167 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 043681 17 RNIAKLNDELYEVHQIMTRNVQEVLGV 43 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~Ni~~il~R 43 (101)
..+...|.++=+=++..-++|.+-+.|
T Consensus 137 ~~~~~~qqqm~~eQDe~Ld~ls~ti~r 163 (235)
T KOG3202|consen 137 QEIVQLQQQMLQEQDEGLDGLSATVQR 163 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666656666666666555554
No 40
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=74.05 E-value=33 Score=25.37 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=14.2
Q ss_pred HHHHHHHhCCcH---HHhHHHHHHHHHHHH
Q 043681 3 IQKTKKLYQDTR---TQRNIAKLNDELYEV 29 (101)
Q Consensus 3 i~~~~~~y~d~~---~~dki~~~~~~v~ev 29 (101)
+++..+.|++.. ..|=+..++.++++|
T Consensus 80 L~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V 109 (230)
T PF03904_consen 80 LEETTKDFIDKTEKVHNDFQDILQDELKDV 109 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555564433 235555666666555
No 41
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.33 E-value=29 Score=26.70 Aligned_cols=42 Identities=17% Similarity=0.363 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhh
Q 043681 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLT 58 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~ 58 (101)
..+.++-.-+.|+..|+.+=-..+.+.|--+|-++-.-|+-+
T Consensus 218 ~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~ 259 (305)
T KOG0809|consen 218 KEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQ 259 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhh
Confidence 457888888999999999999999999987777665554443
No 42
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=71.15 E-value=15 Score=20.26 Aligned_cols=46 Identities=20% Similarity=0.305 Sum_probs=35.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHh
Q 043681 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60 (101)
Q Consensus 15 ~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~ 60 (101)
..+.+..+...+.+++++..+=-..+-+.++.|+.+.+..+.....
T Consensus 10 ~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~ 55 (66)
T smart00397 10 RDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVN 55 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3577888999999999988876666667888888888777655544
No 43
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=70.42 E-value=6 Score=22.51 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q 043681 83 VAIVLGVVFIVFWLKTKLW 101 (101)
Q Consensus 83 ~iii~~vv~~~i~i~~~~~ 101 (101)
.+|.+++++.++.+..|+|
T Consensus 6 ~LIpiSl~l~~~~l~~f~W 24 (51)
T TIGR00847 6 ILIPISLLLGGVGLVAFLW 24 (51)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666665
No 44
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=69.04 E-value=15 Score=22.83 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhHHH
Q 043681 67 KAKDLNRQALIRKWAP 82 (101)
Q Consensus 67 ~a~kl~r~~~w~~~k~ 82 (101)
-.||.||+..|++.-.
T Consensus 4 i~kK~K~k~~l~~~~i 19 (96)
T PF13800_consen 4 ILKKAKRKSRLRTVVI 19 (96)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3466666666665533
No 45
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=68.20 E-value=17 Score=19.71 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=34.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHh
Q 043681 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~ 60 (101)
.+.+..+...+.+++++..+=-..+-+-|+.|+.+.+..+.....
T Consensus 5 ~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~ 49 (60)
T cd00193 5 DEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVN 49 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999998887766666667778888888777655544
No 46
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=67.78 E-value=14 Score=19.71 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=15.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 043681 74 QALIRKWAPVAIVLGVVFIVFWL 96 (101)
Q Consensus 74 ~~~w~~~k~~iii~~vv~~~i~i 96 (101)
+.|.||...-+.+..++++.+|+
T Consensus 17 qkwirnit~cfal~vv~lvslwi 39 (40)
T PF13124_consen 17 QKWIRNITFCFALLVVVLVSLWI 39 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 46888887766666555555554
No 47
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=66.95 E-value=34 Score=25.44 Aligned_cols=7 Identities=0% Similarity=0.273 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 043681 68 AKDLNRQ 74 (101)
Q Consensus 68 a~kl~r~ 74 (101)
|.++.+.
T Consensus 203 Serve~y 209 (244)
T KOG2678|consen 203 SERVEKY 209 (244)
T ss_pred hHHHHHH
Confidence 3444443
No 48
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=65.33 E-value=4.6 Score=21.89 Aligned_cols=10 Identities=20% Similarity=0.016 Sum_probs=3.8
Q ss_pred HHHHHHHHHh
Q 043681 90 VFIVFWLKTK 99 (101)
Q Consensus 90 v~~~i~i~~~ 99 (101)
+++++.+++|
T Consensus 24 I~~vl~~~l~ 33 (40)
T PF08693_consen 24 IIIVLGAFLF 33 (40)
T ss_pred HHHHHHHHhh
Confidence 3333333333
No 49
>PF15431 TMEM190: Transmembrane protein 190
Probab=65.00 E-value=11 Score=25.07 Aligned_cols=18 Identities=11% Similarity=0.266 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHhhC
Q 043681 84 AIVLGVVFIVFWLKTKLW 101 (101)
Q Consensus 84 iii~~vv~~~i~i~~~~~ 101 (101)
...+++++++..+-+|||
T Consensus 66 wtC~gll~Li~~iclFWW 83 (134)
T PF15431_consen 66 WTCGGLLLLICSICLFWW 83 (134)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 334455555555556665
No 50
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=64.93 E-value=91 Score=26.82 Aligned_cols=13 Identities=0% Similarity=-0.069 Sum_probs=6.2
Q ss_pred HhHHHHHHHHHHH
Q 043681 78 RKWAPVAIVLGVV 90 (101)
Q Consensus 78 ~~~k~~iii~~vv 90 (101)
..|++++.+++++
T Consensus 410 ~~yR~~~~lil~~ 422 (806)
T PF05478_consen 410 DSYRWIVGLILCC 422 (806)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555444333
No 51
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=64.87 E-value=9.1 Score=21.12 Aligned_cols=19 Identities=21% Similarity=0.474 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q 043681 83 VAIVLGVVFIVFWLKTKLW 101 (101)
Q Consensus 83 ~iii~~vv~~~i~i~~~~~ 101 (101)
.++.+++++.++.+..|+|
T Consensus 5 ~lip~sl~l~~~~l~~f~W 23 (45)
T PF03597_consen 5 ILIPVSLILGLIALAAFLW 23 (45)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555
No 52
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=64.78 E-value=6.4 Score=23.04 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q 043681 83 VAIVLGVVFIVFWLKTKLW 101 (101)
Q Consensus 83 ~iii~~vv~~~i~i~~~~~ 101 (101)
+++-+++++.++.+..|||
T Consensus 6 ~Lipvsi~l~~v~l~~flW 24 (58)
T COG3197 6 ILIPVSILLGAVGLGAFLW 24 (58)
T ss_pred eHHHHHHHHHHHHHHHHHH
Confidence 3444555555555556665
No 53
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=62.94 E-value=78 Score=25.39 Aligned_cols=21 Identities=10% Similarity=0.134 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhHHHHHhc
Q 043681 23 NDELYEVHQIMTRNVQEVLGV 43 (101)
Q Consensus 23 ~~~v~ev~~im~~Ni~~il~R 43 (101)
.++.+++.....+.+...++.
T Consensus 67 ~~~~~~~~~~w~~~~~~~~~~ 87 (569)
T PRK10600 67 LAQLQALQDYWRNELKPALQQ 87 (569)
T ss_pred HHHHHHHHHHHHHhhhHHhhc
Confidence 344455555555555555544
No 54
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.92 E-value=7.9 Score=28.18 Aligned_cols=28 Identities=11% Similarity=0.063 Sum_probs=18.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhC
Q 043681 74 QALIRKWAPVAIVLGVVFIVFWLKTKLW 101 (101)
Q Consensus 74 ~~~w~~~k~~iii~~vv~~~i~i~~~~~ 101 (101)
+.||+.....+++++++.+..++...+|
T Consensus 15 k~wwkeNGk~li~gviLg~~~lfGW~yw 42 (207)
T COG2976 15 KDWWKENGKALIVGVILGLGGLFGWRYW 42 (207)
T ss_pred HHHHHHCCchhHHHHHHHHHHHHHHHHH
Confidence 4688877666677666666666665554
No 55
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=62.68 E-value=21 Score=22.17 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=13.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 043681 71 LNRQALIRKWAPVAIVLGVVFI 92 (101)
Q Consensus 71 l~r~~~w~~~k~~iii~~vv~~ 92 (101)
+||.-|+..++..++.++++++
T Consensus 5 ~kK~K~k~~l~~~~isi~~~lv 26 (96)
T PF13800_consen 5 LKKAKRKSRLRTVVISIISALV 26 (96)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh
Confidence 4555676666766666555333
No 56
>PF13228 DUF4037: Domain of unknown function (DUF4037)
Probab=62.40 E-value=37 Score=21.51 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=40.3
Q ss_pred HHHHHHHhCCcHHHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhH
Q 043681 3 IQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTS 59 (101)
Q Consensus 3 i~~~~~~y~d~~~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~ 59 (101)
+.++.+++...++.=....+..++..+..-..-|+.+.+.|||-+..-.-.++-+.+
T Consensus 25 ~~~~R~~l~~YP~dl~~~~ia~~~~~~~qa~~~n~~ra~~R~D~~~~~~~~~~fv~~ 81 (100)
T PF13228_consen 25 FTALRERLAYYPEDLRLNKIARNLMLLAQAGQYNLGRALKRGDILAANHAISEFVRS 81 (100)
T ss_pred HHHHHHHHHHChHHHHHHHHHHHHHHhhhhhHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344555554445556667777788888777788999999999988776666664443
No 57
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=60.51 E-value=32 Score=20.17 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=26.1
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 043681 55 SRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFIVFWL 96 (101)
Q Consensus 55 ~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv~~~i~i 96 (101)
.+.-.++..|-+.++|=.|+-.++..+...+..+++-++-++
T Consensus 7 ~~f~k~~~r~lk~~~KPd~~Ef~~iak~t~iG~~i~G~IGf~ 48 (61)
T TIGR00327 7 VEFIKEGTRVLAVCKKPDLEEYLKVAKVTGIGIIIVGIIGYI 48 (61)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456667777777778888877777665554444444333
No 58
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.45 E-value=27 Score=25.46 Aligned_cols=28 Identities=25% Similarity=0.183 Sum_probs=18.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 043681 73 RQALIRKWAPVAIVLGVVFIVFWLKTKL 100 (101)
Q Consensus 73 r~~~w~~~k~~iii~~vv~~~i~i~~~~ 100 (101)
|-+||.-+-..++++.-++=++++.+||
T Consensus 174 Rv~~~Sl~e~~~vv~iSi~Qv~ilk~fF 201 (209)
T KOG1693|consen 174 RVTWWSLLEIIAVVVISIAQVFILKFFF 201 (209)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578887776666666566566666664
No 59
>PHA03386 P10 fibrous body protein; Provisional
Probab=60.27 E-value=16 Score=23.32 Aligned_cols=16 Identities=13% Similarity=0.335 Sum_probs=13.3
Q ss_pred HhHHHHHHHHHHHHHH
Q 043681 16 QRNIAKLNDELYEVHQ 31 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~ 31 (101)
.+|+..+|.+|++++.
T Consensus 18 d~KVdaLQ~qV~dv~~ 33 (94)
T PHA03386 18 DTKVDALQTQLNGLEE 33 (94)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 5888899999998874
No 60
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=59.92 E-value=15 Score=32.71 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=19.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 043681 70 DLNRQALIRKWAPVAIVLGVVFIVFWLKT 98 (101)
Q Consensus 70 kl~r~~~w~~~k~~iii~~vv~~~i~i~~ 98 (101)
|-=+...|+.|++++++..++++++++.+
T Consensus 1060 K~~~~i~W~~yr~~il~~l~ililll~l~ 1088 (1105)
T KOG1326|consen 1060 KSFKFILWHRYRWYILLLLLILILLLLLA 1088 (1105)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456789999999887766665544433
No 61
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=59.75 E-value=23 Score=19.73 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=24.4
Q ss_pred CCcHHHhHHHHHHHHHHHHHHHHHHhHHHHHhcccch
Q 043681 11 QDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKL 47 (101)
Q Consensus 11 ~d~~~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~L 47 (101)
.||+..+.+-+-|..+.+--.-+...++.+-.|=+.|
T Consensus 6 edpC~CEslv~FQ~~v~~~lq~Lt~kL~~vs~RLe~L 42 (47)
T PF10393_consen 6 EDPCKCESLVAFQNKVTSALQSLTQKLDAVSKRLEAL 42 (47)
T ss_dssp S-SS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888999999888887776666555555443333
No 62
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=59.38 E-value=69 Score=23.56 Aligned_cols=24 Identities=13% Similarity=0.302 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Q 043681 18 NIAKLNDELYEVHQIMTRNVQEVL 41 (101)
Q Consensus 18 ki~~~~~~v~ev~~im~~Ni~~il 41 (101)
.-.++..+++.++.-.++-+++..
T Consensus 124 e~EklkndlEk~ks~lr~ei~~~~ 147 (220)
T KOG3156|consen 124 ENEKLKNDLEKLKSSLRHEISKTT 147 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346778889999999998888774
No 63
>PRK10404 hypothetical protein; Provisional
Probab=59.31 E-value=45 Score=21.38 Aligned_cols=45 Identities=7% Similarity=0.069 Sum_probs=22.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhH
Q 043681 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESR 62 (101)
Q Consensus 15 ~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~ 62 (101)
..+-...++.-++++.+++...-+. -++.++.|-++.+..-..+.
T Consensus 7 ~~~l~~dl~~L~~dle~Ll~~~~~~---a~e~~~~lR~r~~~~L~~ar 51 (101)
T PRK10404 7 DTRIDDDLTLLSETLEEVLRSSGDP---ADQKYVELKARAEKALDDVK 51 (101)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555554443 45555555555544444443
No 64
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.70 E-value=69 Score=23.40 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 043681 24 DELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFIVFWLKTKL 100 (101)
Q Consensus 24 ~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv~~~i~i~~~~ 100 (101)
..++|+.+-.++++.-+-+|.|...++.++|. .|-.|..-+-+..++++...=++++..||
T Consensus 144 rrLed~~~sI~~e~~YLr~REeemr~~nesTN----------------srv~~fSi~Sl~v~~~va~~QvlyLK~fF 204 (210)
T KOG1691|consen 144 RRLEDLVESIHEEMYYLREREEEMRNTNESTN----------------SRVAWFSILSLVVLLSVAGWQVLYLKRFF 204 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777778888888888888877777665 12235444444444444444455565554
No 65
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=58.60 E-value=39 Score=20.54 Aligned_cols=46 Identities=17% Similarity=0.431 Sum_probs=24.6
Q ss_pred chhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 043681 46 KLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFIVFWLK 97 (101)
Q Consensus 46 ~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv~~~i~i~ 97 (101)
+||++++|.+.. .+.-|++-.+++-|.-= -+|.++++++++.+++.
T Consensus 23 RLdeieekvef~--~~Ev~Qr~GkkiGRDIG----ILYGlVIGlil~~i~~~ 68 (75)
T COG4064 23 RLDEIEEKVEFV--NGEVYQRIGKKIGRDIG----ILYGLVIGLILCMIYIL 68 (75)
T ss_pred HHHHHHHHHHhh--HHHHHHHHHHHhcchHH----HHHHHHHHHHHHHHHHH
Confidence 455555555533 35567777888776542 23344444444444443
No 66
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.20 E-value=90 Score=24.22 Aligned_cols=33 Identities=18% Similarity=0.497 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHH---HHHHHHhHHHHHhcccchhhhhh
Q 043681 17 RNIAKLNDELYEV---HQIMTRNVQEVLGVGEKLDQVSE 52 (101)
Q Consensus 17 dki~~~~~~v~ev---~~im~~Ni~~il~Rge~Le~L~~ 52 (101)
|.+.+++..|-|+ +++|. +++++..+++|-+.+
T Consensus 232 devrqie~~lvEI~~Lq~ifs---ehvl~Q~~~Id~I~d 267 (316)
T KOG3894|consen 232 DEVRQIEKRLVEISALQDIFS---EHVLQQDQNIDLIHD 267 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4455555544444 44444 466777777777766
No 67
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=57.01 E-value=21 Score=21.64 Aligned_cols=25 Identities=4% Similarity=0.094 Sum_probs=19.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHh
Q 043681 75 ALIRKWAPVAIVLGVVFIVFWLKTK 99 (101)
Q Consensus 75 ~~w~~~k~~iii~~vv~~~i~i~~~ 99 (101)
.|++..|..+++.++.+++-....|
T Consensus 2 ~~~~~ik~~~LF~~~T~lfYy~~~w 26 (71)
T PF14004_consen 2 RWLDMIKFFLLFTGCTLLFYYAILW 26 (71)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778889888888888877766655
No 68
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=57.00 E-value=1e+02 Score=24.75 Aligned_cols=24 Identities=8% Similarity=0.286 Sum_probs=16.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHH
Q 043681 15 TQRNIAKLNDELYEVHQIMTRNVQ 38 (101)
Q Consensus 15 ~~dki~~~~~~v~ev~~im~~Ni~ 38 (101)
..+-+..+.++++.+.+.|...++
T Consensus 121 an~tv~~l~nqv~~l~~al~~t~~ 144 (418)
T cd07912 121 ANHTVAGIDNQTSDTEASLNVTVE 144 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 356667777777777777766555
No 69
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=56.99 E-value=24 Score=27.53 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=15.1
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 043681 16 QRNIAKLNDELYEVHQIM 33 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im 33 (101)
.+.+..++.+++.++.+|
T Consensus 229 e~eL~~iqaqL~tvks~m 246 (372)
T COG3524 229 EDELIVIQAQLDTVKSVM 246 (372)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 366778889999999999
No 70
>PF03238 ESAG1: ESAG protein; InterPro: IPR004922 Trypanosoma brucei is the causative agent of sleeping sickness in humans and nagana in cattle. The parasite lives extracellularly in the blood and tissue fluids of the mammalian host, and is transmitted by the bite of infected tsetse. Each variant surface glycoprotein (Vsg) expression site (ES) in bloodstream-form T. brucei is a polycistronic transcription unit containing several distinct expression site-associated genes (esag), in addition to a single vsg gene. They are co-transcribed with the gene encoding the VSG protein, forming the surface coat of the parasite. ESAG1 genes from different ESs encode a highly polymorphic family of membrane-associated glycoproteins, whose function is unknown [].
Probab=55.10 E-value=57 Score=24.05 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=45.7
Q ss_pred HHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 043681 34 TRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVV 90 (101)
Q Consensus 34 ~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv 90 (101)
++.++|++.-|..+.+|+.|...|=++-..--+..|+.=--+..+.-|+|..++=++
T Consensus 6 hdKLEKLISyGN~MGDLVaKvGGLFAeVNESVRaVRkeiP~ALikaNKYYTAiAEI~ 62 (231)
T PF03238_consen 6 HDKLEKLISYGNEMGDLVAKVGGLFAEVNESVRAVRKEIPGALIKANKYYTAIAEIV 62 (231)
T ss_pred hhhHHHHHHcCcchhhHHHhccchhHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999887777666666665667888888887776544
No 71
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=54.37 E-value=49 Score=22.97 Aligned_cols=32 Identities=13% Similarity=0.073 Sum_probs=18.6
Q ss_pred hhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhH
Q 043681 49 QVSEMSSRLTSESRIYADKAKDLNRQALIRKW 80 (101)
Q Consensus 49 ~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~ 80 (101)
.|.+-+...++.-........+++.-.-|+.=
T Consensus 63 rlr~va~rvQ~vlgd~At~gERl~allsWrdP 94 (156)
T PF08372_consen 63 RLRSVAGRVQNVLGDVATQGERLQALLSWRDP 94 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 34444444555555566666777777777543
No 72
>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.25 E-value=46 Score=19.95 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=16.0
Q ss_pred hhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHH
Q 043681 48 DQVSEMSSRLTSESRIYADKAKDLNRQALIRKWA 81 (101)
Q Consensus 48 e~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k 81 (101)
+.+.+-+.+..-+|..|.++..|=-|+-.-+-.+
T Consensus 5 ~~~~~~~~~f~k~s~rf~krC~KPdrKEf~ki~~ 38 (67)
T KOG3498|consen 5 DQLVEPLRDFAKDSIRFVKRCTKPDRKEFTKIAK 38 (67)
T ss_pred HHhcchHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 3344444444444455555555555555544333
No 73
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=54.04 E-value=27 Score=26.34 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 043681 79 KWAPVAIVLGVVFIVFWLKTKL 100 (101)
Q Consensus 79 ~~k~~iii~~vv~~~i~i~~~~ 100 (101)
|+|+..+++++++=||+++|.|
T Consensus 172 Nlr~lALflAFaINFILLFYKV 193 (274)
T PF06459_consen 172 NLRFLALFLAFAINFILLFYKV 193 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6788888888888888888875
No 74
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.99 E-value=32 Score=25.11 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhHHHHHhcccc
Q 043681 24 DELYEVHQIMTRNVQEVLGVGEK 46 (101)
Q Consensus 24 ~~v~ev~~im~~Ni~~il~Rge~ 46 (101)
..++-..+.|-++||..|+..|.
T Consensus 133 e~Mdm~~Emm~daIDdal~~~ed 155 (224)
T KOG3230|consen 133 EIMDMKEEMMDDAIDDALGDDED 155 (224)
T ss_pred HHHHHHHHHHHHHHHHhhcccch
Confidence 44677888999999999975543
No 75
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.80 E-value=93 Score=23.07 Aligned_cols=66 Identities=9% Similarity=0.155 Sum_probs=36.7
Q ss_pred HHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 043681 33 MTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKD-----LNRQALIRKWAPVAIVLGVVFIVFWLKT 98 (101)
Q Consensus 33 m~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~k-----l~r~~~w~~~k~~iii~~vv~~~i~i~~ 98 (101)
..-+++.+.++-+++..=-+++..+++-+..+..+-+- ..|-.||.-.-...++++-++-+.++.-
T Consensus 151 Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~L~esNf~rVN~WS~vq~~vmi~v~~iQVf~lrs 221 (236)
T KOG3287|consen 151 LDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRNLQESNFDRVNFWSMVQTLVMILVGIIQVFMLRS 221 (236)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcccchhhHHHHHHHHHHHHHhhhhhhhhHH
Confidence 33444555555555555555666666666665554333 3444688877766655555555554443
No 76
>PHA03240 envelope glycoprotein M; Provisional
Probab=51.23 E-value=20 Score=26.59 Aligned_cols=14 Identities=7% Similarity=0.285 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 043681 82 PVAIVLGVVFIVFW 95 (101)
Q Consensus 82 ~~iii~~vv~~~i~ 95 (101)
++++++.+++++|+
T Consensus 215 WIiilIIiIiIIIL 228 (258)
T PHA03240 215 WIFIAIIIIIVIIL 228 (258)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444433333333
No 77
>PHA02650 hypothetical protein; Provisional
Probab=51.13 E-value=16 Score=22.66 Aligned_cols=14 Identities=0% Similarity=0.517 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 043681 83 VAIVLGVVFIVFWL 96 (101)
Q Consensus 83 ~iii~~vv~~~i~i 96 (101)
+++++.++++++++
T Consensus 53 ii~i~~v~i~~l~~ 66 (81)
T PHA02650 53 IFLIFSLIIVALFS 66 (81)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 78
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=50.77 E-value=61 Score=20.89 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=24.5
Q ss_pred hhhhHhhHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHH
Q 043681 55 SRLTSESRIYADKAKDLNRQA----LIRKWAPVAIVLGVVFIVF 94 (101)
Q Consensus 55 ~~L~~~s~~f~~~a~kl~r~~----~w~~~k~~iii~~vv~~~i 94 (101)
|+|.-.-+.|.+++.++++.- .-+|||-.+.++++..+||
T Consensus 28 EdL~peQ~h~akQaE~an~ekV~~~~aknykN~is~a~i~alVi 71 (108)
T KOG4782|consen 28 EDLPPEQKHFAKQAEKANQEKVKEIFAKNYKNHISFAGIGALVI 71 (108)
T ss_pred hhCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 566667777888887777653 3356666555555444443
No 79
>PRK10884 SH3 domain-containing protein; Provisional
Probab=50.62 E-value=93 Score=22.43 Aligned_cols=48 Identities=10% Similarity=0.226 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHH
Q 043681 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADK 67 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~ 67 (101)
+++..+.++.++.+.-|.+-++. +...+++|.+.-++|..+-..-+..
T Consensus 107 ~~l~~~~~~~~~~~~~l~~~~~~---~~~~~~~L~~~n~~L~~~l~~~~~~ 154 (206)
T PRK10884 107 DKLNNIDNTWNQRTAEMQQKVAQ---SDSVINGLKEENQKLKNQLIVAQKK 154 (206)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433222 3444444555555555444443333
No 80
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=50.42 E-value=68 Score=20.79 Aligned_cols=51 Identities=8% Similarity=0.079 Sum_probs=23.2
Q ss_pred hhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHh
Q 043681 49 QVSEMSSRLTSESRIYADKAKDLNRQALIRKW-----APVAIVLGVVFIVFWLKTK 99 (101)
Q Consensus 49 ~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~-----k~~iii~~vv~~~i~i~~~ 99 (101)
.+....+..+..+..++.....-+.+.-|+.. |+-.++..+++++.-++||
T Consensus 182 ~l~~~~~~~~~i~~~~~~~~~~~~~~~ew~~~A~viDR~~~~~F~i~f~~~~i~yw 237 (237)
T PF02932_consen 182 SLRRILEGVRFIAEHLREQDEEEEIKEEWKFVAMVIDRLFRILFPIAFILFNIVYW 237 (237)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHSTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcccceeecccccccccccccccccccHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 34444445555555665555554555556655 3344444444444444443
No 81
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=49.32 E-value=1e+02 Score=22.47 Aligned_cols=52 Identities=17% Similarity=0.350 Sum_probs=25.3
Q ss_pred HHHHhCCcHHHhHHHHHHHHHHHHHHHHH--HhHHHHHhcccchhhhhhhhhhhhH
Q 043681 6 TKKLYQDTRTQRNIAKLNDELYEVHQIMT--RNVQEVLGVGEKLDQVSEMSSRLTS 59 (101)
Q Consensus 6 ~~~~y~d~~~~dki~~~~~~v~ev~~im~--~Ni~~il~Rge~Le~L~~ks~~L~~ 59 (101)
...+|.|.. ..+..++.+.+...+.|. ++++.+++-...|..+...-+.+..
T Consensus 130 vT~~y~D~~--arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~ 183 (262)
T PF14257_consen 130 VTEQYVDLE--ARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEG 183 (262)
T ss_pred hHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344454432 344444444444444443 3566666555555555555444443
No 82
>smart00096 UTG Uteroglobin.
Probab=49.06 E-value=52 Score=19.79 Aligned_cols=39 Identities=10% Similarity=0.055 Sum_probs=27.7
Q ss_pred HHHHHhCCcH-HHhHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 043681 5 KTKKLYQDTR-TQRNIAKLNDELYEVHQIMTRNVQEVLGV 43 (101)
Q Consensus 5 ~~~~~y~d~~-~~dki~~~~~~v~ev~~im~~Ni~~il~R 43 (101)
..+++|++|+ ..+.-.+++.=+|....-=+.||-++++.
T Consensus 23 ~~l~~y~~~~~~~ea~~~lK~cvD~L~~~~k~~i~~ll~k 62 (69)
T smart00096 23 ASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLTEK 62 (69)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3467786555 45788888888887777777777777653
No 83
>PHA02911 C-type lectin-like protein; Provisional
Probab=49.00 E-value=45 Score=24.37 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=15.3
Q ss_pred hcccchhhhhhhhhhhhHhhHHHHH
Q 043681 42 GVGEKLDQVSEMSSRLTSESRIYAD 66 (101)
Q Consensus 42 ~Rge~Le~L~~ks~~L~~~s~~f~~ 66 (101)
++-..+|.|++++.-+.+.|..|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (213)
T PHA02911 2 EMLGPIEVLEEKMKFFADASSIYQK 26 (213)
T ss_pred CccccHHHHHHHHHHHHhhhhhhhh
Confidence 3445567777777766666655543
No 84
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....
Probab=48.63 E-value=32 Score=21.91 Aligned_cols=41 Identities=12% Similarity=0.351 Sum_probs=33.7
Q ss_pred HHHhHHHHHhcccchhhhhhh--hhhhhHhhHHHHHHHHHHHH
Q 043681 33 MTRNVQEVLGVGEKLDQVSEM--SSRLTSESRIYADKAKDLNR 73 (101)
Q Consensus 33 m~~Ni~~il~Rge~Le~L~~k--s~~L~~~s~~f~~~a~kl~r 73 (101)
+++.+..+|.++..|+.+..- +++|++..+.....|++++.
T Consensus 3 v~~~l~~~Laq~~EL~~~~q~vG~d~L~~~~k~~l~~g~~i~e 45 (113)
T PF00306_consen 3 VAGQLKLILAQYRELEEFVQFVGSDALDDEDKLILERGRRIRE 45 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 456677888888888888886 77788888888888888887
No 85
>PF13044 DUF3904: Protein of unknown function (DUF3904)
Probab=48.50 E-value=22 Score=27.19 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Q 043681 64 YADKAKDLNRQALIRKWAPVAIVLGVVFIVFWLKTKLW 101 (101)
Q Consensus 64 f~~~a~kl~r~~~w~~~k~~iii~~vv~~~i~i~~~~~ 101 (101)
|..+-+.+.-..||.-|--|+|++.++++++.+.+..|
T Consensus 396 yvd~ikevtgtswwmvmihyiivgliviv~vv~glklw 433 (436)
T PF13044_consen 396 YVDNIKEVTGTSWWMVMIHYIIVGLIVIVVVVFGLKLW 433 (436)
T ss_pred eecchhhccCcchHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 44456677778899999999999888888777766665
No 86
>PHA02844 putative transmembrane protein; Provisional
Probab=47.78 E-value=34 Score=20.99 Aligned_cols=15 Identities=27% Similarity=0.275 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 043681 84 AIVLGVVFIVFWLKT 98 (101)
Q Consensus 84 iii~~vv~~~i~i~~ 98 (101)
++++.++++++++++
T Consensus 53 i~i~~v~~~~~~~fl 67 (75)
T PHA02844 53 LTIIFVVFATFLTFL 67 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 87
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=47.45 E-value=29 Score=21.74 Aligned_cols=8 Identities=25% Similarity=0.571 Sum_probs=4.0
Q ss_pred HHHHhHHH
Q 043681 75 ALIRKWAP 82 (101)
Q Consensus 75 ~~w~~~k~ 82 (101)
...+.+-+
T Consensus 31 sfirdFvL 38 (84)
T PF06143_consen 31 SFIRDFVL 38 (84)
T ss_pred HHHHHHHH
Confidence 44555544
No 88
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.42 E-value=1.1e+02 Score=22.47 Aligned_cols=35 Identities=6% Similarity=-0.012 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 043681 65 ADKAKDLNRQALIRKWAPVAIVLGVVFIVFWLKTK 99 (101)
Q Consensus 65 ~~~a~kl~r~~~w~~~k~~iii~~vv~~~i~i~~~ 99 (101)
-.+|++.=+-|--|-.+-..++.++++++++++++
T Consensus 179 lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ 213 (220)
T KOG1666|consen 179 LGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILL 213 (220)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666667777776666666555544
No 89
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=47.12 E-value=86 Score=21.04 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=39.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHhc-ccchhhhhhhhhhhhHhhHHHHH
Q 043681 16 QRNIAKLNDELYEVHQIMTRNVQEVLGV-GEKLDQVSEMSSRLTSESRIYAD 66 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni~~il~R-ge~Le~L~~ks~~L~~~s~~f~~ 66 (101)
-.+|..++.+++++...|.+.|+.+-++ .+.+..|..+.+.|.+.-..|..
T Consensus 9 l~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~e 60 (149)
T PF07352_consen 9 LRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAYAE 60 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999988754 45677777777777776666643
No 90
>PF05803 Chordopox_L2: Chordopoxvirus L2 protein; InterPro: IPR008447 This family consists of several Chordopoxvirus L2 proteins.
Probab=46.66 E-value=50 Score=20.82 Aligned_cols=26 Identities=12% Similarity=0.009 Sum_probs=17.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 043681 73 RQALIRKWAPVAIVLGVVFIVFWLKT 98 (101)
Q Consensus 73 r~~~w~~~k~~iii~~vv~~~i~i~~ 98 (101)
-++.+|||+..++++++..+.-+..+
T Consensus 59 ~Rlv~RN~~ill~l~l~~~i~~l~~y 84 (87)
T PF05803_consen 59 IRLVKRNYKILLILALSYAIYRLFNY 84 (87)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 45778888888777666665544443
No 91
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=45.78 E-value=35 Score=21.70 Aligned_cols=30 Identities=7% Similarity=0.139 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 043681 64 YADKAKDLNRQALIRKWAPVAIVLGVVFIV 93 (101)
Q Consensus 64 f~~~a~kl~r~~~w~~~k~~iii~~vv~~~ 93 (101)
|-..+=.....-.|||+-+.+.+.++.+++
T Consensus 36 YL~~~y~y~~sh~WRN~GIli~f~i~f~~~ 65 (103)
T PF06422_consen 36 YLEESYGYSYSHRWRNFGILIAFWIFFIVL 65 (103)
T ss_pred HHhhhccccccchhhhHHHHHHHHHHHHHH
Confidence 444333444556789887665554443333
No 92
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=45.24 E-value=36 Score=19.88 Aligned_cols=40 Identities=10% Similarity=0.148 Sum_probs=27.8
Q ss_pred HHHHHHhCCcH-HHhHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 043681 4 QKTKKLYQDTR-TQRNIAKLNDELYEVHQIMTRNVQEVLGV 43 (101)
Q Consensus 4 ~~~~~~y~d~~-~~dki~~~~~~v~ev~~im~~Ni~~il~R 43 (101)
+...++|+.|+ ..+...++++=+++...-=+.|+.++++.
T Consensus 20 ~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~~ 60 (67)
T PF01099_consen 20 KESLQKYNPPPEAVEAKLELKQCVDKLSNETRENILKLLEK 60 (67)
T ss_dssp HHHHHCC---HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45577786554 56888888888888888888888887753
No 93
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.14 E-value=97 Score=23.46 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHH
Q 043681 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKD 70 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~k 70 (101)
+.+.++.+-+...|+...+==.++=...+.|+.+.++++.+...-..--+++++
T Consensus 218 ~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 218 ENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 556667777777777666666666666778888888888777654444444443
No 94
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=44.51 E-value=81 Score=20.60 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Q 043681 63 IYADKAKDLNRQALIRKWAPVAIV 86 (101)
Q Consensus 63 ~f~~~a~kl~r~~~w~~~k~~iii 86 (101)
...+++++ ++.++++|....+.
T Consensus 57 ~~~~k~~~--~~~~i~kyg~~GL~ 78 (121)
T PF06695_consen 57 WLEKKAEK--KSKKIEKYGFWGLA 78 (121)
T ss_pred HHHHHHHH--HHHHHHHHhHHHHH
Confidence 34444444 55677888755444
No 95
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=43.62 E-value=41 Score=18.93 Aligned_cols=12 Identities=8% Similarity=-0.028 Sum_probs=7.0
Q ss_pred HHHHhHHHHHHH
Q 043681 75 ALIRKWAPVAIV 86 (101)
Q Consensus 75 ~~w~~~k~~iii 86 (101)
.+|++++..++-
T Consensus 2 e~~~~~~~~iiG 13 (51)
T PF10031_consen 2 EFWKNHRGKIIG 13 (51)
T ss_pred hHHHHCcchHHH
Confidence 367777654443
No 96
>PF08858 IDEAL: IDEAL domain; InterPro: IPR014957 This entry represents the C-terminal domain of Bacteriophage SPP1, p90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. his domain may also be referred to as the IDEAL domain, after the sequence of the most conserved region of the domain.; PDB: 3DO9_A.
Probab=42.68 E-value=51 Score=17.16 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=13.4
Q ss_pred HHHHHHHhHHHHHhcccc
Q 043681 29 VHQIMTRNVQEVLGVGEK 46 (101)
Q Consensus 29 v~~im~~Ni~~il~Rge~ 46 (101)
-++-..+.||.+|++|++
T Consensus 10 ~~~~L~~~ID~ALd~~D~ 27 (37)
T PF08858_consen 10 RKEQLLELIDEALDNRDK 27 (37)
T ss_dssp HHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHcCCH
Confidence 456677889999998865
No 97
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=42.39 E-value=1.1e+02 Score=21.69 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHh
Q 043681 24 DELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRK 79 (101)
Q Consensus 24 ~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~ 79 (101)
+-+.+.-.+|.+.+.++++||...+-+.+. |+.-.+-++++++|=+
T Consensus 126 ~~vk~L~~~mv~Sv~elV~~g~E~~~l~rg----------l~~~e~~v~~~~~~y~ 171 (174)
T PF04510_consen 126 DLVKELLPKMVKSVKELVERGMEVGFLRRG----------LRDFESFVSRQMNWYK 171 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHH----------HHHHHHHHHHHHHHhh
Confidence 445667778999999999999776665543 4444566777776644
No 98
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=42.16 E-value=59 Score=21.84 Aligned_cols=39 Identities=5% Similarity=-0.121 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 043681 62 RIYADKAKDLNRQALIRKWAPVAIVLGVVFIVFWLKTKL 100 (101)
Q Consensus 62 ~~f~~~a~kl~r~~~w~~~k~~iii~~vv~~~i~i~~~~ 100 (101)
+.|.++=..+=..+--...|+.++++.+.++..+..+.|
T Consensus 10 kaFErRLtEvI~~l~Pst~RWRiiL~v~svct~v~A~~w 48 (125)
T PF09771_consen 10 KAFERRLTEVINSLQPSTTRWRIILVVVSVCTAVGAWHW 48 (125)
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 557776666655554445577777777777666666554
No 99
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=42.10 E-value=31 Score=23.11 Aligned_cols=21 Identities=10% Similarity=0.023 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 043681 80 WAPVAIVLGVVFIVFWLKTKL 100 (101)
Q Consensus 80 ~k~~iii~~vv~~~i~i~~~~ 100 (101)
..+++++++++++++++++++
T Consensus 21 ~GWwll~~lll~~~~~~~~~~ 41 (146)
T PF14316_consen 21 PGWWLLLALLLLLLILLLWRL 41 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666665553
No 100
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=41.74 E-value=55 Score=23.71 Aligned_cols=40 Identities=13% Similarity=0.225 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHH--hHHHHHhcccchhhhhhhhhhhhHhh
Q 043681 22 LNDELYEVHQIMTR--NVQEVLGVGEKLDQVSEMSSRLTSES 61 (101)
Q Consensus 22 ~~~~v~ev~~im~~--Ni~~il~Rge~Le~L~~ks~~L~~~s 61 (101)
.+-+++.++.+|++ |-+.+++|.-.=.+|+++-++|+..-
T Consensus 21 aKiq~~~~k~~m~d~snf~~ife~~~sdse~Dd~vd~lE~~v 62 (214)
T PF06837_consen 21 AKIQIESIKPIMQDFSNFDEIFERPLSDSELDDKVDKLETDV 62 (214)
T ss_pred HHHHHHhhhHHHHhccchHHHHcccCcchhHHHHHHHHhhhH
Confidence 45567888899985 88999999877778888888777543
No 101
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=41.62 E-value=1.5e+02 Score=22.14 Aligned_cols=22 Identities=18% Similarity=0.045 Sum_probs=13.5
Q ss_pred hhhhhhhhhhHhhHHHHHHHHH
Q 043681 49 QVSEMSSRLTSESRIYADKAKD 70 (101)
Q Consensus 49 ~L~~ks~~L~~~s~~f~~~a~k 70 (101)
.++..++.|...|...++-+++
T Consensus 191 ~~D~N~~~L~~~Serve~y~ks 212 (244)
T KOG2678|consen 191 GIDVNSQGLMDVSERVEKYDKS 212 (244)
T ss_pred HHhHHHHHHHhhhHHHHHHHHh
Confidence 3455566677777766666544
No 102
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=41.15 E-value=84 Score=26.08 Aligned_cols=57 Identities=12% Similarity=0.185 Sum_probs=36.9
Q ss_pred HHhCCcHHHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHH
Q 043681 8 KLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 64 (101)
Q Consensus 8 ~~y~d~~~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f 64 (101)
..|.+-++.+.+...++.+++++.-=.+|...+.+.-+.++.|....+...+....|
T Consensus 182 ~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~ 238 (555)
T TIGR03545 182 KRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSA 238 (555)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455567788888888888877433555577777778887666665544444443
No 103
>KOG4515 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.55 E-value=47 Score=24.08 Aligned_cols=52 Identities=23% Similarity=0.380 Sum_probs=33.1
Q ss_pred HHHHHHhCCcHH-HhHHHHHHHHHHHHHHH------HHHhHHHHHhcccchhhhhhhhh
Q 043681 4 QKTKKLYQDTRT-QRNIAKLNDELYEVHQI------MTRNVQEVLGVGEKLDQVSEMSS 55 (101)
Q Consensus 4 ~~~~~~y~d~~~-~dki~~~~~~v~ev~~i------m~~Ni~~il~Rge~Le~L~~ks~ 55 (101)
++..+.|....+ -.++.++..++--++.+ |.+.++.+|.-||+|+-++-+++
T Consensus 137 ~~~qk~ya~yaeq~~k~n~ls~~l~riq~~l~~~Vp~le~lN~~L~~~eRLePf~~~~d 195 (217)
T KOG4515|consen 137 RAHQKQYAGYAEQLSKLNQLSDDLCRIQIILEDIVPMLETLNEILTPDERLEPFNLGSD 195 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcccccCCcccCcc
Confidence 344555644443 25555555555555444 55667889999999998888775
No 104
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=40.32 E-value=1.2e+02 Score=20.77 Aligned_cols=44 Identities=11% Similarity=0.198 Sum_probs=23.2
Q ss_pred hHHHHHHHhCCcHHHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhh
Q 043681 2 FIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEM 53 (101)
Q Consensus 2 ~i~~~~~~y~d~~~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~k 53 (101)
|+.++.++-.+-++ ++.+|+-+==.+-+++..+.|..=|+..+.
T Consensus 6 fL~~L~~~L~~lp~--------~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~ 49 (181)
T PF08006_consen 6 FLNELEKYLKKLPE--------EEREEILEYYEEYFDDAGEEGKSEEEIIAE 49 (181)
T ss_pred HHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHHhhhCCCCHHHHHHH
Confidence 55555555443222 234455555556666666666555555544
No 105
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=39.74 E-value=47 Score=20.25 Aligned_cols=8 Identities=13% Similarity=0.401 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 043681 26 LYEVHQIM 33 (101)
Q Consensus 26 v~ev~~im 33 (101)
++.|+.+|
T Consensus 24 i~vVksVl 31 (72)
T PF12575_consen 24 INVVKSVL 31 (72)
T ss_pred HHHHHHHH
Confidence 34444443
No 106
>PRK12430 putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
Probab=39.66 E-value=60 Score=25.78 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=31.7
Q ss_pred cchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 043681 45 EKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGV 89 (101)
Q Consensus 45 e~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~v 89 (101)
...++..+++.+---.++.|-.+-+.-+|.+|-+.+++.++-.|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (379)
T PRK12430 101 NSKDEVIKKTNDTLLQKNNFNRSLKNFSKTSWKKTMFYRIIPLVF 145 (379)
T ss_pred cchhHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677766666777787777888888888888877654333
No 107
>PHA03054 IMV membrane protein; Provisional
Probab=39.56 E-value=53 Score=19.96 Aligned_cols=15 Identities=13% Similarity=0.372 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 043681 83 VAIVLGVVFIVFWLK 97 (101)
Q Consensus 83 ~iii~~vv~~~i~i~ 97 (101)
+++++.+++++++++
T Consensus 52 ii~l~~v~~~~l~~f 66 (72)
T PHA03054 52 IIIFFIVLILLLLIY 66 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 108
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=39.22 E-value=1.4e+02 Score=21.15 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH-hcccchhhhhhhh---hhhhHhhHHHHHHHHHHH
Q 043681 20 AKLNDELYEVHQIMTRNVQEVL-GVGEKLDQVSEMS---SRLTSESRIYADKAKDLN 72 (101)
Q Consensus 20 ~~~~~~v~ev~~im~~Ni~~il-~Rge~Le~L~~ks---~~L~~~s~~f~~~a~kl~ 72 (101)
.+++.+++++-.-+.+-+|... +=.+.|+.|...- |++...|+.++.+|..+.
T Consensus 101 ~QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~ 157 (171)
T PF04799_consen 101 HQVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLE 157 (171)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777666666665544 1223333333333 333344444444444444
No 109
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=38.65 E-value=2e+02 Score=22.78 Aligned_cols=20 Identities=0% Similarity=0.257 Sum_probs=10.9
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 043681 16 QRNIAKLNDELYEVHQIMTR 35 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~ 35 (101)
++.+..++.+++++.+-|.+
T Consensus 102 n~t~~~i~~~v~~~~~~l~~ 121 (406)
T PF04906_consen 102 NHTLSGIDNLVSDTTEALNS 121 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666554443
No 110
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=38.64 E-value=36 Score=26.26 Aligned_cols=6 Identities=17% Similarity=0.457 Sum_probs=3.1
Q ss_pred HHHhhC
Q 043681 96 LKTKLW 101 (101)
Q Consensus 96 i~~~~~ 101 (101)
+.+|||
T Consensus 128 ~~~www 133 (331)
T PRK10856 128 TGAWWW 133 (331)
T ss_pred HHHHHh
Confidence 335665
No 111
>PHA02819 hypothetical protein; Provisional
Probab=38.10 E-value=61 Score=19.68 Aligned_cols=11 Identities=18% Similarity=0.896 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 043681 86 VLGVVFIVFWL 96 (101)
Q Consensus 86 i~~vv~~~i~i 96 (101)
++.++++++++
T Consensus 53 l~~~~~~~~~~ 63 (71)
T PHA02819 53 LVTIVFVIIFI 63 (71)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 112
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=37.89 E-value=1.2e+02 Score=19.96 Aligned_cols=60 Identities=15% Similarity=0.262 Sum_probs=46.7
Q ss_pred HhHHHHHHHHHHHH----HHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHH
Q 043681 16 QRNIAKLNDELYEV----HQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQA 75 (101)
Q Consensus 16 ~dki~~~~~~v~ev----~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~ 75 (101)
...+.+++..++++ +....+|-+.+|..-..++.+..-.+.+...-.....+..+++.+.
T Consensus 32 ~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV 95 (132)
T PF10392_consen 32 STPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEV 95 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777665 4566778889999999999998888888888888888888887664
No 113
>PHA02975 hypothetical protein; Provisional
Probab=37.68 E-value=58 Score=19.66 Aligned_cols=10 Identities=10% Similarity=0.215 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 043681 87 LGVVFIVFWL 96 (101)
Q Consensus 87 ~~vv~~~i~i 96 (101)
+.++++++++
T Consensus 52 ~~v~~~~~~~ 61 (69)
T PHA02975 52 IFITCIAVFT 61 (69)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 114
>PF00482 T2SF: Type II secretion system (T2SS), protein F; InterPro: IPR018076 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) [], have been found to be evolutionary related. These are proteins of about 400 amino acids that are highly hydrophobic and which are thought to be integral protein of the inner membrane. Proteins with this domain form a platform for the type II secretion machinery, as well as the type IV pili and the archaeal flagellae [].; PDB: 2VMA_A 3C1Q_A 2VMB_B 2WHN_B.
Probab=37.55 E-value=67 Score=19.33 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHh--HHHHHhc
Q 043681 22 LNDELYEVHQIMTRN--VQEVLGV 43 (101)
Q Consensus 22 ~~~~v~ev~~im~~N--i~~il~R 43 (101)
+..+++.+..-|... ++..+++
T Consensus 31 l~~~~~~~~~~l~~G~~~~~al~~ 54 (124)
T PF00482_consen 31 LREELQKIRRRLRNGGSLEEALER 54 (124)
T ss_dssp HHHHHHHHHHHHHTT--HHHHHCT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHH
Confidence 344444444444433 4444443
No 115
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=37.35 E-value=77 Score=18.13 Aligned_cols=41 Identities=7% Similarity=0.315 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhH
Q 043681 19 IAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESR 62 (101)
Q Consensus 19 i~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~ 62 (101)
+.+++...+.+-+-+..-+| +=|.+|++|+..-.+|..+|.
T Consensus 12 L~qmq~kFq~mS~~I~~riD---eM~~RIDdLE~si~dl~~qag 52 (54)
T PF06825_consen 12 LQQMQDKFQTMSDQILGRID---EMSSRIDDLEKSIADLMTQAG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHCCHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHhcC
Confidence 34444444443333333333 345667777766666665543
No 116
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=36.90 E-value=82 Score=20.82 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhh
Q 043681 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLT 58 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~ 58 (101)
..+..++.++++...--...++-+=++.|..+.|..--.+|.
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 455556666666655544445544455555555544444443
No 117
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=36.81 E-value=16 Score=24.22 Aligned_cols=32 Identities=9% Similarity=0.117 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Q 043681 47 LDQVSEMSSRLTSESRIYADKAKDLNRQALIR 78 (101)
Q Consensus 47 Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~ 78 (101)
+..+.+....+...-..++..+...+++.+|-
T Consensus 128 l~~i~~~q~~~~~r~~~~~~~~es~~~~i~~~ 159 (183)
T PF01105_consen 128 LKEIKDEQKYLREREERHRQLNESTNSRIMWW 159 (183)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhheEEhH
Confidence 33444444555555555666666666666543
No 118
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=36.44 E-value=37 Score=26.07 Aligned_cols=22 Identities=14% Similarity=0.522 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 043681 79 KWAPVAIVLGVVFIVFWLKTKL 100 (101)
Q Consensus 79 ~~k~~iii~~vv~~~i~i~~~~ 100 (101)
+.-+++++++.+++++++.||+
T Consensus 276 ~l~piil~IG~vl~i~~Ig~~i 297 (305)
T PF04639_consen 276 SLLPIILIIGGVLLIVFIGYFI 297 (305)
T ss_pred hhhHHHHHHHHHHHHHHhhhee
Confidence 3445566666666667776663
No 119
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=36.33 E-value=27 Score=24.06 Aligned_cols=8 Identities=25% Similarity=0.173 Sum_probs=3.2
Q ss_pred HHHHHHHh
Q 043681 92 IVFWLKTK 99 (101)
Q Consensus 92 ~~i~i~~~ 99 (101)
++++|+.|
T Consensus 91 Iv~~Iv~~ 98 (179)
T PF13908_consen 91 IVVLIVCF 98 (179)
T ss_pred HHHhHhhh
Confidence 34444433
No 120
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=35.87 E-value=1.2e+02 Score=19.46 Aligned_cols=36 Identities=11% Similarity=0.263 Sum_probs=18.7
Q ss_pred hhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 043681 48 DQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVF 91 (101)
Q Consensus 48 e~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv~ 91 (101)
+.+.+-+++.+...+.|. +.-+++|...+++.+++.
T Consensus 21 ~~I~k~~~~~n~~kk~fk--------ki~~KKyg~~~il~~l~~ 56 (104)
T PF12420_consen 21 DYIDKLKKDPNIDKKKFK--------KIIFKKYGLIFILPFLVP 56 (104)
T ss_pred HHHHHHhhCCChhHHHHH--------HHHHHHhhHHHHHHHHHH
Confidence 344555555555555553 234566665555554444
No 121
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=35.79 E-value=1.1e+02 Score=19.11 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHH
Q 043681 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQ 74 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~ 74 (101)
+++++...+++.|..-.+. .-=..|.=..|++--..+........+.=+.|++.
T Consensus 12 ekl~~cr~~le~ve~rL~~----~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 12 EKLAQCRRRLEAVESRLRR----RELSPEARRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHHHHHHHHHHHHHHHHcc----cCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 5555555555555332221 11111122244455556666677777777777763
No 122
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=35.69 E-value=91 Score=18.05 Aligned_cols=53 Identities=17% Similarity=0.376 Sum_probs=25.4
Q ss_pred hHHHHHHHhCCcHHHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhh
Q 043681 2 FIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLT 58 (101)
Q Consensus 2 ~i~~~~~~y~d~~~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~ 58 (101)
+|.+......+++....+..++..+...+.+.. .+-.++++++.+.+.++.|.
T Consensus 16 Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~----ei~~~~~~l~~l~~~~~~L~ 68 (105)
T PF00435_consen 16 WLQETEAKLSSSEPGSDLEELEEQLKKHKELQE----EIESRQERLESLNEQAQQLI 68 (105)
T ss_dssp HHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHHHH
Confidence 344444444333323344445555554444332 33345556666666666663
No 123
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=35.57 E-value=76 Score=19.84 Aligned_cols=29 Identities=10% Similarity=0.258 Sum_probs=23.4
Q ss_pred hhhhhhhhhhhhHhhHHHHHHHHHHHHHH
Q 043681 47 LDQVSEMSSRLTSESRIYADKAKDLNRQA 75 (101)
Q Consensus 47 Le~L~~ks~~L~~~s~~f~~~a~kl~r~~ 75 (101)
|+.|++|++.|...-..+-.+.+..|+..
T Consensus 42 LD~LE~rnD~l~~~L~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 42 LDHLEQRNDHLHAQLQELLESNRQIRLEF 70 (83)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999988888888888777654
No 124
>PF11812 DUF3333: Domain of unknown function (DUF3333); InterPro: IPR024573 This N-terminal domain is functionally uncharacterised and it is found in proteins annotated as putative phosphate ABC transporter permease proteins. This presumed domain is typically between 116 to 159 amino acids in length.
Probab=35.25 E-value=1.2e+02 Score=20.85 Aligned_cols=21 Identities=10% Similarity=0.252 Sum_probs=10.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 043681 78 RKWAPVAIVLGVVFIVFWLKT 98 (101)
Q Consensus 78 ~~~k~~iii~~vv~~~i~i~~ 98 (101)
+.+|++.+.+.++.++.++++
T Consensus 13 ~rFr~~g~~Ai~~~l~fL~~l 33 (155)
T PF11812_consen 13 RRFRAYGLAAIAIALAFLVIL 33 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555444444444433
No 125
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=35.20 E-value=13 Score=26.69 Aligned_cols=22 Identities=9% Similarity=0.375 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q 043681 76 LIRKWAPVAIVLGVVFIVFWLK 97 (101)
Q Consensus 76 ~w~~~k~~iii~~vv~~~i~i~ 97 (101)
+..+|.+|+++++|++.+++=.
T Consensus 32 ~L~~yGWyil~~~I~ly~l~qk 53 (190)
T PF06936_consen 32 FLSSYGWYILFGCILLYLLWQK 53 (190)
T ss_dssp ----------------------
T ss_pred HHHHhCHHHHHHHHHHHHHHHH
Confidence 5688999999888877766543
No 126
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=35.18 E-value=82 Score=17.36 Aligned_cols=25 Identities=20% Similarity=0.522 Sum_probs=20.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHH
Q 043681 16 QRNIAKLNDELYEVHQIMTRNVQEV 40 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni~~i 40 (101)
...+..+.+-+.++++.|++.+.++
T Consensus 7 ~~ql~~l~~~l~elk~~l~~Q~kE~ 31 (45)
T PF11598_consen 7 IKQLSELNQMLQELKELLRQQIKET 31 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888999999999988765
No 127
>PRK11546 zraP zinc resistance protein; Provisional
Probab=35.05 E-value=85 Score=21.51 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=13.7
Q ss_pred CcHHHhHHHHHHHHHHHHHHHH
Q 043681 12 DTRTQRNIAKLNDELYEVHQIM 33 (101)
Q Consensus 12 d~~~~dki~~~~~~v~ev~~im 33 (101)
++++..++.++.+|+.+++.-|
T Consensus 84 ~~pD~~kI~aL~kEI~~Lr~kL 105 (143)
T PRK11546 84 NPPDSSKINAVAKEMENLRQSL 105 (143)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 4445566777777777766544
No 128
>PF15013 CCSMST1: CCSMST1 family
Probab=34.90 E-value=24 Score=21.79 Aligned_cols=19 Identities=11% Similarity=0.259 Sum_probs=11.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH
Q 043681 75 ALIRKWAPVAIVLGVVFIVFWL 96 (101)
Q Consensus 75 ~~w~~~k~~iii~~vv~~~i~i 96 (101)
.||+ ++.+.++++++++|+
T Consensus 29 PWyq---~~~is~sl~~fliyF 47 (77)
T PF15013_consen 29 PWYQ---VYPISLSLAAFLIYF 47 (77)
T ss_pred ccee---eehhHHHHHHHHHHH
Confidence 5654 555666677777763
No 129
>PF10039 DUF2275: Predicted integral membrane protein (DUF2275); InterPro: IPR018734 This domain, found in various hypothetical bacterial proteins and in the RNA polymerase sigma factor, has no known function.
Probab=34.76 E-value=65 Score=23.60 Aligned_cols=22 Identities=5% Similarity=0.129 Sum_probs=9.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 043681 74 QALIRKWAPVAIVLGVVFIVFWL 96 (101)
Q Consensus 74 ~~~w~~~k~~iii~~vv~~~i~i 96 (101)
++|.+.+|.+. +++++++++..
T Consensus 28 ~~~~k~~r~~A-l~alil~i~as 49 (218)
T PF10039_consen 28 RMWRKYKRAIA-LAALILFILAS 49 (218)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHH
Confidence 45544444444 44444444333
No 130
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=34.58 E-value=38 Score=25.96 Aligned_cols=11 Identities=18% Similarity=0.561 Sum_probs=4.7
Q ss_pred HHHHHHHHhhC
Q 043681 91 FIVFWLKTKLW 101 (101)
Q Consensus 91 ~~~i~i~~~~~ 101 (101)
+.|++|+++.|
T Consensus 271 l~vvliiLYiW 281 (295)
T TIGR01478 271 LTVVLIILYIW 281 (295)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 131
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=34.11 E-value=1.9e+02 Score=22.89 Aligned_cols=18 Identities=11% Similarity=0.242 Sum_probs=7.6
Q ss_pred hCCcHHHhHHHHHHHHHH
Q 043681 10 YQDTRTQRNIAKLNDELY 27 (101)
Q Consensus 10 y~d~~~~dki~~~~~~v~ 27 (101)
..+|....-+.++..+++
T Consensus 88 ~~~~~~~~~l~~i~~~l~ 105 (397)
T COG1459 88 APNPKLKQVLTSILEELE 105 (397)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 334344444444444443
No 132
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=33.95 E-value=72 Score=18.89 Aligned_cols=12 Identities=33% Similarity=0.720 Sum_probs=8.5
Q ss_pred HHHHHHHHhHHH
Q 043681 28 EVHQIMTRNVQE 39 (101)
Q Consensus 28 ev~~im~~Ni~~ 39 (101)
+.+.+|.+|+..
T Consensus 10 ~L~~ii~~~~~~ 21 (76)
T PF04155_consen 10 ELRKIILKNMKE 21 (76)
T ss_pred HHHHHHHHHhcc
Confidence 456777777775
No 133
>PHA03164 hypothetical protein; Provisional
Probab=33.89 E-value=55 Score=20.34 Aligned_cols=17 Identities=6% Similarity=0.180 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 043681 83 VAIVLGVVFIVFWLKTK 99 (101)
Q Consensus 83 ~iii~~vv~~~i~i~~~ 99 (101)
.+++.|+++.+|+++.|
T Consensus 60 FlvLtgLaIamILfiif 76 (88)
T PHA03164 60 FLVLTGLAIAMILFIIF 76 (88)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34555555555444444
No 134
>COG1422 Predicted membrane protein [Function unknown]
Probab=33.76 E-value=1.9e+02 Score=21.05 Aligned_cols=69 Identities=14% Similarity=0.278 Sum_probs=36.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHhc--ccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-H
Q 043681 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGV--GEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVV-F 91 (101)
Q Consensus 15 ~~dki~~~~~~v~ev~~im~~Ni~~il~R--ge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv-~ 91 (101)
+..++.++|++.+|.++-+++ +-++ .++|+.|+++-.++.+.. +.+--..+|+.+.+..+. .
T Consensus 70 D~ekm~~~qk~m~efq~e~~e----A~~~~d~~~lkkLq~~qmem~~~Q-----------~elmk~qfkPM~~~~v~tI~ 134 (201)
T COG1422 70 DQEKMKELQKMMKEFQKEFRE----AQESGDMKKLKKLQEKQMEMMDDQ-----------RELMKMQFKPMLYISVLTIP 134 (201)
T ss_pred cHHHHHHHHHHHHHHHHHHHH----HHHhCCHHHHHHHHHHHHHHHHHH-----------HHHHHHhhhhHHHHHHHHHH
Confidence 457788888888888776654 3332 335555555554444333 333334556655554333 3
Q ss_pred HHHHHHH
Q 043681 92 IVFWLKT 98 (101)
Q Consensus 92 ~~i~i~~ 98 (101)
++.|+..
T Consensus 135 ~F~Wl~~ 141 (201)
T COG1422 135 FFAWLRW 141 (201)
T ss_pred HHHHHHH
Confidence 3344443
No 135
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=33.51 E-value=1.1e+02 Score=21.00 Aligned_cols=8 Identities=13% Similarity=0.310 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 043681 80 WAPVAIVL 87 (101)
Q Consensus 80 ~k~~iii~ 87 (101)
.+..++++
T Consensus 18 ~~~~~i~~ 25 (149)
T PF11694_consen 18 LRYILIII 25 (149)
T ss_pred HHHHHHHH
Confidence 34333333
No 136
>PTZ00370 STEVOR; Provisional
Probab=33.42 E-value=41 Score=25.82 Aligned_cols=12 Identities=17% Similarity=0.595 Sum_probs=5.2
Q ss_pred HHHHHHHHHhhC
Q 043681 90 VFIVFWLKTKLW 101 (101)
Q Consensus 90 v~~~i~i~~~~~ 101 (101)
++.|++|+++.|
T Consensus 266 il~vvliilYiw 277 (296)
T PTZ00370 266 ILAVVLIILYIW 277 (296)
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 137
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=33.33 E-value=3.2e+02 Score=23.60 Aligned_cols=10 Identities=10% Similarity=0.365 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 043681 63 IYADKAKDLN 72 (101)
Q Consensus 63 ~f~~~a~kl~ 72 (101)
.|.....+.-
T Consensus 401 ~~~~~~~~y~ 410 (806)
T PF05478_consen 401 SFEDEYEKYD 410 (806)
T ss_pred cchhHHHHHH
Confidence 3333333333
No 138
>PF12534 DUF3733: Leucine-rich repeat containing protein 8 ; InterPro: IPR021040 This entry represents a conserved domain, approximately 60 amino acids in length, found in a number of eukaryotic protein; mostly as a duplicated N-terminal domain in proteins having a C-terminal leucine-rich repeat domain (PF00560 from PFAM). Each domain contains two completely conserved residues (W and Y) that may be functionally important. Most of the proteins in this entry are annotated as leucine-rich repeat containing protein 8, but beyond that there is little known about their function.
Probab=33.10 E-value=88 Score=18.59 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=19.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHh
Q 043681 74 QALIRKWAPVAIVLGVVFIVFWLKTK 99 (101)
Q Consensus 74 ~~~w~~~k~~iii~~vv~~~i~i~~~ 99 (101)
+-||..+-.|+.++-..+.++..-++
T Consensus 21 kPWwdvf~~YL~~~mlmi~v~~~~~q 46 (65)
T PF12534_consen 21 KPWWDVFFDYLVLLMLMIFVFGGTFQ 46 (65)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 48999999998887777766655444
No 139
>PRK13530 arsenate reductase; Provisional
Probab=33.04 E-value=58 Score=21.40 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=23.3
Q ss_pred CCcHHHhHHHHHHHHHHHHHHHHHHhHHHHHhccc
Q 043681 11 QDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGE 45 (101)
Q Consensus 11 ~d~~~~dki~~~~~~v~ev~~im~~Ni~~il~Rge 45 (101)
.||...+ .....++.+.+...++.+++|||
T Consensus 104 ~DP~~~~-----~~~f~~~~~~I~~~v~~l~~~~~ 133 (133)
T PRK13530 104 DDPAGKE-----WSEFQRVRDEIGERIKRFAETGE 133 (133)
T ss_pred CCCCCCc-----HHHHHHHHHHHHHHHHHHHHhcC
Confidence 4665433 46688889999999999999986
No 140
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=32.92 E-value=1.6e+02 Score=19.89 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhh
Q 043681 20 AKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMS 54 (101)
Q Consensus 20 ~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks 54 (101)
..+..+++....-+.+..+++=+-..+.+.+..+.
T Consensus 83 q~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv 117 (143)
T PF12718_consen 83 QLLEEELEEAEKKLKETTEKLREADVKAEHFERKV 117 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33333333333333333333333333333333333
No 141
>KOG3052 consensus Cytochrome c1 [Energy production and conversion]
Probab=32.91 E-value=78 Score=24.12 Aligned_cols=23 Identities=13% Similarity=0.416 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhC
Q 043681 79 KWAPVAIVLGVVFIVFWLKTKLW 101 (101)
Q Consensus 79 ~~k~~iii~~vv~~~i~i~~~~~ 101 (101)
-+|+.+++.+++++.++++.|-|
T Consensus 274 g~K~i~il~~l~~~s~y~KR~kW 296 (311)
T KOG3052|consen 274 GLKVIFILSFLTLLSYYIKRHKW 296 (311)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhc
Confidence 56888899999999999999876
No 142
>PRK09793 methyl-accepting protein IV; Provisional
Probab=32.75 E-value=1.6e+02 Score=23.73 Aligned_cols=52 Identities=15% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHH
Q 043681 14 RTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYA 65 (101)
Q Consensus 14 ~~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~ 65 (101)
.....+.++...++++.++..+|-..+=+-.+..+.|.+.+++|......|+
T Consensus 461 e~~~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~a~~l~~~v~~F~ 512 (533)
T PRK09793 461 EQRRGIEQVAQAVSQMDQVTQQNASLVEEAAVATEQLANQADHLSSRVAVFT 512 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 143
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=32.12 E-value=1.5e+02 Score=19.52 Aligned_cols=51 Identities=20% Similarity=0.291 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHhc----ccchhhhhhhhhhhhHhhHHHHHH
Q 043681 17 RNIAKLNDELYEVHQIMTRNVQEVLGV----GEKLDQVSEMSSRLTSESRIYADK 67 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~Ni~~il~R----ge~Le~L~~ks~~L~~~s~~f~~~ 67 (101)
..+..++.+|+++++=|++.-++.=.. ..++|+|+++...|++....++..
T Consensus 8 ~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~d 62 (112)
T PF07439_consen 8 QQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKAD 62 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 456677777777777777666554422 246777777777776655555444
No 144
>PF13040 DUF3901: Protein of unknown function (DUF3901)
Probab=31.92 E-value=62 Score=17.42 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=21.6
Q ss_pred HHHHHHhHHHHHhcccchhhhhhhhh
Q 043681 30 HQIMTRNVQEVLGVGEKLDQVSEMSS 55 (101)
Q Consensus 30 ~~im~~Ni~~il~Rge~Le~L~~ks~ 55 (101)
.+.+.+|-+.+|...+.++.++++-+
T Consensus 9 eeLV~eNK~ell~d~~~me~Ieerie 34 (40)
T PF13040_consen 9 EELVRENKQELLNDKEAMEKIEERIE 34 (40)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 45678899999999999998888765
No 145
>PF14992 TMCO5: TMCO5 family
Probab=31.77 E-value=2.3e+02 Score=21.59 Aligned_cols=12 Identities=8% Similarity=-0.069 Sum_probs=8.3
Q ss_pred HHHHHHHhHHHH
Q 043681 72 NRQALIRKWAPV 83 (101)
Q Consensus 72 ~r~~~w~~~k~~ 83 (101)
.+..|.+.+++.
T Consensus 210 ~~~~wkr~lr~l 221 (280)
T PF14992_consen 210 SPTFWKRALRLL 221 (280)
T ss_pred hhHHHHHHHHHH
Confidence 357787777774
No 146
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=31.72 E-value=55 Score=26.06 Aligned_cols=19 Identities=5% Similarity=0.193 Sum_probs=12.4
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 043681 72 NRQALIRKWAPVAIVLGVV 90 (101)
Q Consensus 72 ~r~~~w~~~k~~iii~~vv 90 (101)
+++-||..|+..+++.+++
T Consensus 294 r~r~~~~r~~~c~~~~i~~ 312 (387)
T PF12751_consen 294 RQRSWFSRFASCIYLSILL 312 (387)
T ss_pred ccccHHhhhhHHHHHHHHH
Confidence 4567888887766654443
No 147
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=31.69 E-value=99 Score=25.07 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=7.9
Q ss_pred hhhhhhhhhhhhHhhHHHH
Q 043681 47 LDQVSEMSSRLTSESRIYA 65 (101)
Q Consensus 47 Le~L~~ks~~L~~~s~~f~ 65 (101)
.+.|.+.++.|......|+
T Consensus 498 ~~~l~~~a~~L~~~v~~Fk 516 (554)
T PRK15041 498 AAALEEQASRLTEAVAVFR 516 (554)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3334444444444444443
No 148
>COG4499 Predicted membrane protein [Function unknown]
Probab=31.53 E-value=51 Score=26.46 Aligned_cols=20 Identities=10% Similarity=0.059 Sum_probs=8.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 043681 78 RKWAPVAIVLGVVFIVFWLKT 98 (101)
Q Consensus 78 ~~~k~~iii~~vv~~~i~i~~ 98 (101)
.-+|+. .+|+++++++++++
T Consensus 218 ~ifk~~-giGliillvl~li~ 237 (434)
T COG4499 218 TIFKYF-GIGLIILLVLLLIY 237 (434)
T ss_pred eehhhH-HHhHHHHHHHHHHH
Confidence 344433 33344444433333
No 149
>PHA03395 p10 fibrous body protein; Provisional
Probab=31.33 E-value=65 Score=20.32 Aligned_cols=15 Identities=13% Similarity=0.295 Sum_probs=12.4
Q ss_pred HhHHHHHHHHHHHHH
Q 043681 16 QRNIAKLNDELYEVH 30 (101)
Q Consensus 16 ~dki~~~~~~v~ev~ 30 (101)
.+|+..++.+|++++
T Consensus 17 d~KVdalQ~~V~~l~ 31 (87)
T PHA03395 17 SDKVDALQAAVDDVR 31 (87)
T ss_pred hhHHHHHHHHHHHHH
Confidence 578888888888885
No 150
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=31.14 E-value=3.1e+02 Score=22.88 Aligned_cols=44 Identities=11% Similarity=0.219 Sum_probs=22.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhH
Q 043681 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTS 59 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~ 59 (101)
.+.+.++...|++..+...+--+.+-.....-..+.++++.|..
T Consensus 44 ~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~ 87 (618)
T PF06419_consen 44 NRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELRE 87 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666555544444444333333344444444433
No 151
>PHA02692 hypothetical protein; Provisional
Probab=30.99 E-value=45 Score=20.23 Aligned_cols=8 Identities=38% Similarity=0.472 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 043681 26 LYEVHQIM 33 (101)
Q Consensus 26 v~ev~~im 33 (101)
++-|+.+|
T Consensus 24 i~vVksVL 31 (70)
T PHA02692 24 LNIVRTVM 31 (70)
T ss_pred HHHHHHHH
Confidence 33333333
No 152
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=30.87 E-value=1.7e+02 Score=19.60 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 043681 19 IAKLNDELYEVHQIMTRNVQEV 40 (101)
Q Consensus 19 i~~~~~~v~ev~~im~~Ni~~i 40 (101)
...+-.+|++|-+.+...=+.+
T Consensus 45 ~~~v~kql~~vs~~l~~tKkhL 66 (126)
T PF07889_consen 45 VASVSKQLEQVSESLSSTKKHL 66 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333333
No 153
>COG1766 fliF Flagellar basal body M-ring protein [Cell motility and secretion]
Probab=30.80 E-value=1.2e+02 Score=25.11 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhC
Q 043681 81 APVAIVLGVVFIVFWLKTKLW 101 (101)
Q Consensus 81 k~~iii~~vv~~~i~i~~~~~ 101 (101)
|+.+++++++++.+.+++.+|
T Consensus 24 ki~l~~~~~~~v~~~v~l~l~ 44 (545)
T COG1766 24 KIVLLGAGAALVAVLVALLLW 44 (545)
T ss_pred HHHHHHHHHHHHHHHHHHhee
Confidence 444444444444444444443
No 154
>PLN03223 Polycystin cation channel protein; Provisional
Probab=30.64 E-value=1.2e+02 Score=28.46 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=36.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhH
Q 043681 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTS 59 (101)
Q Consensus 15 ~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~ 59 (101)
+.|.+.+-++.+-+++.-+.++=-+++++.++|.++++|-.+|.+
T Consensus 1579 e~~~L~~s~erL~~~Q~~l~egQ~k~~~~Q~~la~~q~kl~~l~~ 1623 (1634)
T PLN03223 1579 EVDQLQQSLERLAEVQRELAEGQVKVIEGQKQMAERQSRLSQLEN 1623 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 356677777888888888888989999999999988888777765
No 155
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=30.59 E-value=1.8e+02 Score=22.47 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=32.5
Q ss_pred HHHHHHHhCCcH--HHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhH
Q 043681 3 IQKTKKLYQDTR--TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTS 59 (101)
Q Consensus 3 i~~~~~~y~d~~--~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~ 59 (101)
++++...|+.-. =.|+=..|..|++.|+.-.++ -+..|..+.+.|...|+.-..
T Consensus 184 ~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAme---iL~aRqkkAeeLkrltd~A~~ 239 (302)
T PF07139_consen 184 IKKIKQTFAELQSCLMDREVALLAEMDKVKAEAME---ILDARQKKAEELKRLTDRASQ 239 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhh
Confidence 345555554322 246667788889998875554 455666666666666644333
No 156
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=30.05 E-value=78 Score=19.46 Aligned_cols=28 Identities=11% Similarity=0.111 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHhcccchhh
Q 043681 22 LNDELYEVHQIMTRNVQEVLGVGEKLDQ 49 (101)
Q Consensus 22 ~~~~v~ev~~im~~Ni~~il~Rge~Le~ 49 (101)
-+.+++.+-+.+.+.|.+.|.+|++++.
T Consensus 17 s~~~~~~~v~~~~~~i~~~L~~g~~V~i 44 (90)
T PRK10753 17 SKTQAKAALESTLAAITESLKEGDAVQL 44 (90)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 3557788888888889999999988753
No 157
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=29.90 E-value=1.1e+02 Score=25.34 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=19.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHH
Q 043681 16 QRNIAKLNDELYEVHQIMTRNVQ 38 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni~ 38 (101)
.+.++.++++|+.+.++..+|=.
T Consensus 441 ~~~i~~l~~~~~sl~~~v~qnr~ 463 (561)
T PF00429_consen 441 EDSISALQEQLTSLAEVVLQNRR 463 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCch
Confidence 47889999999999998888843
No 158
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=29.63 E-value=1.3e+02 Score=18.11 Aligned_cols=18 Identities=11% Similarity=0.270 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhHHHHH
Q 043681 24 DELYEVHQIMTRNVQEVL 41 (101)
Q Consensus 24 ~~v~ev~~im~~Ni~~il 41 (101)
.++..-+..+.+.|++.-
T Consensus 24 ~el~~sQ~~L~~~i~~~~ 41 (92)
T PF14712_consen 24 QELRQSQEELLQQIDRLN 41 (92)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444445555555444
No 159
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=29.61 E-value=1.7e+02 Score=19.26 Aligned_cols=52 Identities=13% Similarity=0.161 Sum_probs=24.4
Q ss_pred HHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHH
Q 043681 29 VHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAP 82 (101)
Q Consensus 29 v~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~ 82 (101)
.-.+|.+-...+.+|-..|++--+..++=... .. .++-+-++|++.+=+...
T Consensus 15 ll~~~tnRl~ri~dR~R~L~~~~~~~~~~~~~-~~-~~el~~L~rR~~li~~ai 66 (130)
T PF11026_consen 15 LLLVLTNRLARIVDRIRQLHDELRDAPDEEER-RL-RRELRILRRRARLIRRAI 66 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCcchhh-hH-HHHHHHHHHHHHHHHHHH
Confidence 34455556666666665555433221111110 01 455566666665544443
No 160
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=29.54 E-value=1.1e+02 Score=21.62 Aligned_cols=15 Identities=20% Similarity=0.169 Sum_probs=6.3
Q ss_pred HHHhHHHHHHHHHHH
Q 043681 76 LIRKWAPVAIVLGVV 90 (101)
Q Consensus 76 ~w~~~k~~iii~~vv 90 (101)
.|+++++.+++++++
T Consensus 17 l~r~~~~ill~~ll~ 31 (226)
T TIGR01006 17 LWKRKLLILIVALIF 31 (226)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444433333
No 161
>COG0776 HimA Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair]
Probab=29.24 E-value=82 Score=19.99 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhHHHHHhcccchhh
Q 043681 23 NDELYEVHQIMTRNVQEVLGVGEKLDQ 49 (101)
Q Consensus 23 ~~~v~ev~~im~~Ni~~il~Rge~Le~ 49 (101)
+.+.+++-+.+-+.|...|.+|++++.
T Consensus 19 k~~a~~~v~~~~~~i~~aL~~G~~V~l 45 (94)
T COG0776 19 KKDAEEAVDAFLEEITEALAKGERVEL 45 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 557888999999999999999999875
No 162
>PF12579 DUF3755: Protein of unknown function (DUF3755); InterPro: IPR022228 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue N that may be functionally important.
Probab=29.22 E-value=48 Score=17.25 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=12.2
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 043681 16 QRNIAKLNDELYEVHQIMT 34 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~ 34 (101)
.|.|..+.+++.++-++|.
T Consensus 16 R~NI~~il~~m~~mpgim~ 34 (35)
T PF12579_consen 16 RDNILAILNDMNDMPGIMS 34 (35)
T ss_pred HHHHHHHHHHHHcchhhhc
Confidence 4666666666666666664
No 163
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.00 E-value=1.7e+02 Score=21.39 Aligned_cols=52 Identities=19% Similarity=0.108 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHH
Q 043681 25 ELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQAL 76 (101)
Q Consensus 25 ~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~ 76 (101)
.+..|+.-|.+==+-++++=|++-+=.++-|=|-+.+...+.++...+++.-
T Consensus 126 ~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r 177 (217)
T KOG0859|consen 126 KLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGR 177 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHH
Confidence 4667788888777777888777777777777788999999999988888763
No 164
>PF15469 Sec5: Exocyst complex component Sec5
Probab=28.73 E-value=1.9e+02 Score=19.67 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHH
Q 043681 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYAD 66 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~ 66 (101)
..+..+...++++......-.+-+++|.++.+.+..--+-|+....-|.=
T Consensus 40 ~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~r~~flF~L 89 (182)
T PF15469_consen 40 SGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQRNRFLFNL 89 (182)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777888888888888888888888888888777666666555555533
No 165
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=28.71 E-value=1.2e+02 Score=23.61 Aligned_cols=12 Identities=0% Similarity=0.266 Sum_probs=4.8
Q ss_pred hhhhhhhhhhhh
Q 043681 47 LDQVSEMSSRLT 58 (101)
Q Consensus 47 Le~L~~ks~~L~ 58 (101)
++.++++.+++.
T Consensus 153 is~lEd~~~~i~ 164 (370)
T PF02994_consen 153 ISELEDRIEEIE 164 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 334444443333
No 166
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=28.67 E-value=2.6e+02 Score=21.19 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=43.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHH
Q 043681 14 RTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNR 73 (101)
Q Consensus 14 ~~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r 73 (101)
++.+.+.++++++.+...-+...=.++-+-.+.++.+...-+++...-..+...-..+.+
T Consensus 206 ~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 206 CDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888887777766777777777888887777777766666655444443
No 167
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=28.64 E-value=29 Score=19.40 Aligned_cols=9 Identities=33% Similarity=0.471 Sum_probs=4.1
Q ss_pred hHHHHHHHH
Q 043681 79 KWAPVAIVL 87 (101)
Q Consensus 79 ~~k~~iii~ 87 (101)
++++.++++
T Consensus 3 k~rwiili~ 11 (47)
T PRK10299 3 KFRWVVLVV 11 (47)
T ss_pred eeeehHHHH
Confidence 445554443
No 168
>PRK14758 hypothetical protein; Provisional
Probab=28.33 E-value=85 Score=15.42 Aligned_cols=18 Identities=6% Similarity=0.139 Sum_probs=9.5
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 043681 78 RKWAPVAIVLGVVFIVFW 95 (101)
Q Consensus 78 ~~~k~~iii~~vv~~~i~ 95 (101)
++|++=+|+...+++-++
T Consensus 3 ~RYrFEliLivlIlCali 20 (27)
T PRK14758 3 GRYRFEFILIILILCALI 20 (27)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 456666666555444433
No 169
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=27.98 E-value=2.9e+02 Score=21.52 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 043681 69 KDLNRQALIRKWAPVAIVLGVVFIVFWLKTK 99 (101)
Q Consensus 69 ~kl~r~~~w~~~k~~iii~~vv~~~i~i~~~ 99 (101)
.+.+=|-=..++|.++.++++++.+++.+++
T Consensus 115 ~kf~yKdEYEkFKl~~tii~l~~~~~~~~~~ 145 (330)
T PF07851_consen 115 AKFKYKDEYEKFKLYLTIILLLFAVALLFLL 145 (330)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455555556778777776666655444443
No 170
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=27.94 E-value=93 Score=15.85 Aligned_cols=9 Identities=11% Similarity=0.150 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 043681 83 VAIVLGVVF 91 (101)
Q Consensus 83 ~iii~~vv~ 91 (101)
.+++++.+.
T Consensus 7 tfll~~tlg 15 (31)
T PRK11875 7 ILILTLALV 15 (31)
T ss_pred HHHHHHHHH
Confidence 334444333
No 171
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=27.64 E-value=1.1e+02 Score=18.72 Aligned_cols=18 Identities=6% Similarity=0.266 Sum_probs=12.6
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 043681 16 QRNIAKLNDELYEVHQIM 33 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im 33 (101)
.+|+..++.+|++++.-+
T Consensus 17 d~KVdaLq~~V~~l~~~~ 34 (75)
T PF05531_consen 17 DDKVDALQTQVDDLESNL 34 (75)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 477888888887765544
No 172
>PF12279 DUF3619: Protein of unknown function (DUF3619); InterPro: IPR022064 This protein is found in bacteria. Proteins in this family are about 140 amino acids in length. This protein has two conserved sequence motifs: AAR and DDLP.
Probab=27.62 E-value=1.2e+02 Score=20.26 Aligned_cols=23 Identities=13% Similarity=-0.026 Sum_probs=13.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 043681 73 RQALIRKWAPVAIVLGVVFIVFW 95 (101)
Q Consensus 73 r~~~w~~~k~~iii~~vv~~~i~ 95 (101)
...||......+.++.+++.++.
T Consensus 67 ~~~~~~r~~~~~pl~aLv~gL~~ 89 (131)
T PF12279_consen 67 GGSWWRRLGLALPLLALVAGLAG 89 (131)
T ss_pred CccHHHHHHHHHHHHHHHHHHHH
Confidence 34688888766555555533333
No 173
>PRK06007 fliF flagellar MS-ring protein; Reviewed
Probab=27.61 E-value=1.6e+02 Score=24.20 Aligned_cols=19 Identities=16% Similarity=0.076 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 043681 82 PVAIVLGVVFIVFWLKTKL 100 (101)
Q Consensus 82 ~~iii~~vv~~~i~i~~~~ 100 (101)
+.+++++++++++++++++
T Consensus 25 ~~l~~~~~~~v~~~~~l~~ 43 (542)
T PRK06007 25 IALIGAGAAVVAAIVALVL 43 (542)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 174
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=27.61 E-value=2.4e+02 Score=24.23 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=23.4
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 043681 55 SRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFIVFWLKT 98 (101)
Q Consensus 55 ~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv~~~i~i~~ 98 (101)
+++++-|...+..|+. ..-|.||...+++.++.+++++.+
T Consensus 23 ~~m~~Ia~~I~eGA~a----FL~reYk~i~~~~vi~~~ll~~~~ 62 (682)
T PF03030_consen 23 EKMQEIAAAIQEGAMA----FLKREYKTIAIFIVIVAILLFFLL 62 (682)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444432 233567877777777776666665
No 175
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=27.44 E-value=1.4e+02 Score=17.52 Aligned_cols=13 Identities=8% Similarity=0.130 Sum_probs=4.8
Q ss_pred HHHHHHHHHHhHH
Q 043681 26 LYEVHQIMTRNVQ 38 (101)
Q Consensus 26 v~ev~~im~~Ni~ 38 (101)
+.+..+-+.++++
T Consensus 31 l~~~~~~~~~~~~ 43 (74)
T PF12732_consen 31 LKDKAEDLKDKAK 43 (74)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 176
>PF02706 Wzz: Chain length determinant protein; InterPro: IPR003856 A number of related proteins are involved in the synthesis of lipopolysaccharide, O-antigen polysaccharide, capsule polysaccharide and exopolysaccharides. Chain length determinant protein (or wzz protein) is involved in lipopolysaccharide (lps) biosynthesis, conferring a modal distribution of chain length on the O-antigen component of lps []. It gives rise to a reduced number of short chain molecules and increases in numbers of longer molecules, with a modal value of 20. The MPA/MPA2 proteins function in CPS and EPS polymerisation and export [].; GO: 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane; PDB: 4E2H_C 3B8P_A 4E2C_B 4E29_A 3B8O_G 4E2L_I 3B8N_D 3B8M_C.
Probab=27.17 E-value=21 Score=23.08 Aligned_cols=20 Identities=25% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q 043681 76 LIRKWAPVAIVLGVVFIVFW 95 (101)
Q Consensus 76 ~w~~~k~~iii~~vv~~~i~ 95 (101)
.|++.++.++++++++++.+
T Consensus 12 l~r~~~~i~~~~~l~~~~a~ 31 (152)
T PF02706_consen 12 LWRRKWLIIIVTLLFAILAF 31 (152)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444444433
No 177
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=26.85 E-value=1e+02 Score=15.84 Aligned_cols=14 Identities=21% Similarity=0.534 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 043681 80 WAPVAIVLGVVFIV 93 (101)
Q Consensus 80 ~k~~iii~~vv~~~ 93 (101)
.++..+++++.+++
T Consensus 8 H~W~Gl~~g~~l~~ 21 (37)
T PF13706_consen 8 HRWLGLILGLLLFV 21 (37)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 178
>PF11812 DUF3333: Domain of unknown function (DUF3333); InterPro: IPR024573 This N-terminal domain is functionally uncharacterised and it is found in proteins annotated as putative phosphate ABC transporter permease proteins. This presumed domain is typically between 116 to 159 amino acids in length.
Probab=26.70 E-value=2.2e+02 Score=19.61 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 043681 69 KDLNRQALIRKWAPVAIVLGVVFIVFWL 96 (101)
Q Consensus 69 ~kl~r~~~w~~~k~~iii~~vv~~~i~i 96 (101)
++-++....+-|.+..|+++++++++++
T Consensus 7 kR~~~e~rFr~~g~~Ai~~~l~fL~~ll 34 (155)
T PF11812_consen 7 KRYRAERRFRAYGLAAIAIALAFLVILL 34 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445777787777777666666554
No 179
>KOG2866 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.53 E-value=1.8e+02 Score=22.95 Aligned_cols=46 Identities=15% Similarity=0.126 Sum_probs=35.5
Q ss_pred hCCcHHHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhh
Q 043681 10 YQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSS 55 (101)
Q Consensus 10 y~d~~~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~ 55 (101)
..+....++...+.++++.....|+.-++.+++.++.|+......+
T Consensus 82 d~~~~~~~~~neI~~~v~~l~qe~~~~~e~i~da~~~l~~a~~~is 127 (349)
T KOG2866|consen 82 DLDKADVDKENEILNEVENLHQEVRLPREDIADAENLLDLAASDIS 127 (349)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhHHH
Confidence 3344456777888889999999999999999999988877665444
No 180
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=26.22 E-value=68 Score=19.72 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=20.1
Q ss_pred hHHHHHHHH-HHHHHHHHHHhHHHHHhcc
Q 043681 17 RNIAKLNDE-LYEVHQIMTRNVQEVLGVG 44 (101)
Q Consensus 17 dki~~~~~~-v~ev~~im~~Ni~~il~Rg 44 (101)
+.+.++.+. =.||.++|++||..+|..-
T Consensus 13 e~~~~l~~~~s~ev~e~m~~~v~~llG~l 41 (86)
T PF05542_consen 13 ERIQQLSEPASPEVLEAMKQHVSGLLGNL 41 (86)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHcCC
Confidence 344444333 3689999999999999766
No 181
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=26.06 E-value=2.8e+02 Score=20.66 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHH
Q 043681 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADK 67 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~ 67 (101)
..+..+.+.+..-+++ .+=-++.+..-.-.++|.+++....+.|+.|.-+
T Consensus 71 ae~~~l~~~~k~~~e~-~eLkdk~~rs~Ad~eNlr~R~~r~~edak~FaiQ 120 (236)
T KOG3003|consen 71 AEKALLEKVLKLEKEE-QELKDKYLRSLAECENLRDRTIRDVEDAKKFAIQ 120 (236)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555 4445555444445666666766666666666544
No 182
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=25.95 E-value=2.5e+02 Score=20.02 Aligned_cols=20 Identities=10% Similarity=0.076 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHhHHHHH
Q 043681 22 LNDELYEVHQIMTRNVQEVL 41 (101)
Q Consensus 22 ~~~~v~ev~~im~~Ni~~il 41 (101)
=..++++..+...+-+.+.-
T Consensus 106 W~~~i~~~~~~i~~ll~~a~ 125 (204)
T PF00517_consen 106 WEKEISNYTGNIYNLLEEAQ 125 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHHHH
Confidence 44555555444444444333
No 183
>PTZ00238 expression site-associated gene (ESAG); Provisional
Probab=25.80 E-value=2.5e+02 Score=21.72 Aligned_cols=57 Identities=11% Similarity=0.144 Sum_probs=45.0
Q ss_pred HHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 043681 34 TRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVV 90 (101)
Q Consensus 34 ~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv 90 (101)
++-++|++.-|....+|+.|...|=++-..--+..|+-=--+..+.-|+|..++=++
T Consensus 103 hDKLEKLISyGN~MGDLVaKvGGLFaeVNESVraVRkeiP~ALikaNKYYTaiAEI~ 159 (326)
T PTZ00238 103 HDKLEKLISYGNAMGDLVAKVGGLFAEVNESVRAVRKEIPDALIKANKYYTAIAEIT 159 (326)
T ss_pred chhHHHHHHhcchhhhHHHHhchhhHHHHHHHHHHHHHCcHHHHhhhhHHHHHHHHH
Confidence 456899999999999999999999877776666666655567888888887776554
No 184
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=25.79 E-value=1.2e+02 Score=19.27 Aligned_cols=14 Identities=0% Similarity=-0.033 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 043681 82 PVAIVLGVVFIVFW 95 (101)
Q Consensus 82 ~~iii~~vv~~~i~ 95 (101)
+++++++++++..+
T Consensus 24 FWlv~~liill~c~ 37 (102)
T PF11669_consen 24 FWLVWVLIILLSCC 37 (102)
T ss_pred HHHHHHHHHHHHHH
Confidence 34443333333333
No 185
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=25.73 E-value=1.6e+02 Score=17.74 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=5.7
Q ss_pred hhhhhhhhhhHhhH
Q 043681 49 QVSEMSSRLTSESR 62 (101)
Q Consensus 49 ~L~~ks~~L~~~s~ 62 (101)
+..++.+.+.....
T Consensus 62 dv~~k~~~v~~~~~ 75 (90)
T PF06103_consen 62 DVNEKLEKVDPVFE 75 (90)
T ss_pred HHHHHHHhHHHHHH
Confidence 34444444443333
No 186
>PHA02141 hypothetical protein
Probab=25.67 E-value=91 Score=19.77 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=13.8
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 043681 75 ALIRKWAPVAIVLGVVFI 92 (101)
Q Consensus 75 ~~w~~~k~~iii~~vv~~ 92 (101)
.|.++..+|+|+.++..+
T Consensus 10 swl~~n~ly~ii~~l~~~ 27 (105)
T PHA02141 10 SWLRNNVLYMIIIGLLGW 27 (105)
T ss_pred HHHHhchHHHHHHHHHHH
Confidence 699999999888665543
No 187
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=25.60 E-value=87 Score=16.88 Aligned_cols=36 Identities=22% Similarity=0.171 Sum_probs=20.6
Q ss_pred HHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHH
Q 043681 39 EVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQ 74 (101)
Q Consensus 39 ~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~ 74 (101)
++++|=.+|=.+-+.+..-.++|..+...|.+|-.+
T Consensus 2 kil~kI~kLLalA~~~~~~~~EA~~A~~kAq~Lm~k 37 (43)
T PF10979_consen 2 KILEKIRKLLALAESTGSNEHEAEAALAKAQRLMAK 37 (43)
T ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Confidence 344444444444443334445788888888777544
No 188
>CHL00038 psbL photosystem II protein L
Probab=25.59 E-value=1.2e+02 Score=16.14 Aligned_cols=13 Identities=15% Similarity=0.122 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhh
Q 043681 88 GVVFIVFWLKTKL 100 (101)
Q Consensus 88 ~vv~~~i~i~~~~ 100 (101)
.+|+.+++-.||+
T Consensus 25 ifvl~vlfssyff 37 (38)
T CHL00038 25 IFVLAVLFSNYFF 37 (38)
T ss_pred HHHHHHHHHHHhc
Confidence 3344444444543
No 189
>PHA03011 hypothetical protein; Provisional
Probab=25.58 E-value=2e+02 Score=18.82 Aligned_cols=50 Identities=14% Similarity=0.244 Sum_probs=28.1
Q ss_pred HHHHHhCCcHHHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhh
Q 043681 5 KTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSR 56 (101)
Q Consensus 5 ~~~~~y~d~~~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~ 56 (101)
++..+|+.- .|...-+..+..+...+.++|.+.+.-=...++.|.+.-..
T Consensus 68 eL~~qYN~L--~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN 117 (120)
T PHA03011 68 ELIAQYNEL--LDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIAN 117 (120)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhc
Confidence 344455422 24455556666666677777777766555555555554433
No 190
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.55 E-value=1.7e+02 Score=17.89 Aligned_cols=50 Identities=18% Similarity=0.184 Sum_probs=25.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHH
Q 043681 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 64 (101)
Q Consensus 15 ~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f 64 (101)
..|.|.=++-++++.++-=..=-+.+-+-.+..+.|+...++|.+.-...
T Consensus 16 AvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~W 65 (79)
T COG3074 16 AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777765432222222222333445555555555444433
No 191
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=25.55 E-value=1.3e+02 Score=22.42 Aligned_cols=26 Identities=8% Similarity=-0.004 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 043681 68 AKDLNRQALIRKWAPVAIVLGVVFIV 93 (101)
Q Consensus 68 a~kl~r~~~w~~~k~~iii~~vv~~~ 93 (101)
+.+-+-..||..|.+.++++..++++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (249)
T PRK15348 209 ANKGKVVKWLMKYPYQLMLSLTGLLL 234 (249)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555668999999887776664443
No 192
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=25.49 E-value=1.4e+02 Score=23.39 Aligned_cols=19 Identities=5% Similarity=-0.071 Sum_probs=9.3
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q 043681 75 ALIRKWAPVAIVLGVVFIV 93 (101)
Q Consensus 75 ~~w~~~k~~iii~~vv~~~ 93 (101)
..|++.+++++++++++++
T Consensus 35 ~L~r~k~~Il~~~~~~~~~ 53 (377)
T PRK10381 35 VLWKAKKTIIAITFAFACA 53 (377)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556555554444444433
No 193
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=25.35 E-value=1.1e+02 Score=18.78 Aligned_cols=26 Identities=8% Similarity=0.346 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhHHHHHhcccchh
Q 043681 23 NDELYEVHQIMTRNVQEVLGVGEKLD 48 (101)
Q Consensus 23 ~~~v~ev~~im~~Ni~~il~Rge~Le 48 (101)
+.++..+-+.+.+.|.+.|.+|+++.
T Consensus 19 ~~~~~~vv~~~~~~i~~~L~~g~~V~ 44 (94)
T PRK00199 19 AKDVENAVKEILEEMSDALARGDRIE 44 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 45677888888888888999998765
No 194
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=25.16 E-value=2e+02 Score=18.67 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhHHHHHhcc-----cchhhhhhhhhhhhHh
Q 043681 25 ELYEVHQIMTRNVQEVLGVG-----EKLDQVSEMSSRLTSE 60 (101)
Q Consensus 25 ~v~ev~~im~~Ni~~il~Rg-----e~Le~L~~ks~~L~~~ 60 (101)
+-+++...+.+.+..+|++= +.++.|..+-+.|...
T Consensus 71 ~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~ 111 (118)
T TIGR01837 71 NWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQ 111 (118)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 33566677788888888772 5667777776666553
No 195
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=24.93 E-value=1.5e+02 Score=20.34 Aligned_cols=29 Identities=10% Similarity=0.205 Sum_probs=24.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHhcc
Q 043681 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVG 44 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni~~il~Rg 44 (101)
.|.++++|..|+++.+.+-+.|.-+=..+
T Consensus 2 aDRlTQLQd~vn~~A~qf~naig~Lq~~~ 30 (139)
T KOG1510|consen 2 ADRLTQLQDTVNEMAEQFCNAIGVLQQTH 30 (139)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 37899999999999999999998554433
No 196
>KOG1696 consensus 60s ribosomal protein L19 [Translation, ribosomal structure and biogenesis]
Probab=24.82 E-value=2.7e+02 Score=19.96 Aligned_cols=55 Identities=7% Similarity=0.277 Sum_probs=36.8
Q ss_pred hHHHHHHHhCCcHHHhH------HHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhh
Q 043681 2 FIQKTKKLYQDTRTQRN------IAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSR 56 (101)
Q Consensus 2 ~i~~~~~~y~d~~~~dk------i~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~ 56 (101)
.+..+.++|.|+...|+ .-+++++|=.-+.+|.|.|.+.=.-..+-..|.++++.
T Consensus 101 vlRrlL~kyR~skKIdkh~YH~lY~k~KGnvFKnK~~LmE~I~K~KAe~~r~K~LadQaeA 161 (193)
T KOG1696|consen 101 VLRRLLKKYRDSKKIDKHMYHDLYLKVKGNVFKNKRVLMEHIHKSKAEKAREKLLADQAEA 161 (193)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899987765444 45778888888899999988765443333344444443
No 197
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=24.65 E-value=2.1e+02 Score=21.92 Aligned_cols=12 Identities=8% Similarity=0.152 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 043681 86 VLGVVFIVFWLK 97 (101)
Q Consensus 86 i~~vv~~~i~i~ 97 (101)
+|=++++..++.
T Consensus 311 ~GD~llaaa~is 322 (344)
T PF12777_consen 311 VGDSLLAAAFIS 322 (344)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 198
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=24.56 E-value=2.5e+02 Score=19.62 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHH
Q 043681 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAK 69 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~ 69 (101)
.-+-.+-.+++..-..|+.|.. .+|+.+.++-..|+.+|......+.
T Consensus 30 ~dlv~la~~iq~Ad~~~~~~t~------~kL~~I~eQi~~Lq~QA~~ile~~~ 76 (159)
T PF10504_consen 30 FDLVDLAQQIQKADSAMRANTC------NKLEVIAEQIRFLQEQARKILEEAE 76 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356777888888888888876 4788899999999998888877654
No 199
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=24.48 E-value=2.2e+02 Score=18.99 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHH
Q 043681 21 KLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRI 63 (101)
Q Consensus 21 ~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~ 63 (101)
++..+|.++.+-|.+-.+++-.=-++++.....++.|...|..
T Consensus 3 ~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAK 45 (121)
T PF03310_consen 3 TIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAK 45 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Confidence 3444444444444333333322234455555556666654433
No 200
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=24.42 E-value=1.5e+02 Score=20.68 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=14.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Q 043681 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALI 77 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w 77 (101)
.+++.+++.++.+.+..=.++.+.+++=...++.+..........-.........++.+.-.
T Consensus 73 e~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~ 134 (194)
T PF08614_consen 73 EQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKD 134 (194)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999988888777777777777777665543
No 201
>PF02697 DUF217: Uncharacterized ACR, COG1753; InterPro: IPR003847 This entry is represented by Natrialba phage PhiCh1, Orf96. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.23 E-value=1.7e+02 Score=17.50 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=30.6
Q ss_pred HhHHHHHhcccchhhhhhhhhhhhH-hhHHHHHHHHHHHHHHHHH
Q 043681 35 RNVQEVLGVGEKLDQVSEMSSRLTS-ESRIYADKAKDLNRQALIR 78 (101)
Q Consensus 35 ~Ni~~il~Rge~Le~L~~ks~~L~~-~s~~f~~~a~kl~r~~~w~ 78 (101)
+=|..++.++.+...|.+-...|++ .|.......+..++.++-+
T Consensus 26 dvI~rli~~~~~~~~l~~~~g~l~deea~~~~~~i~e~r~~~~~r 70 (71)
T PF02697_consen 26 DVIERLIEKEKKRRDLMDYFGILSDEEADEMEKDIKEEREEFRER 70 (71)
T ss_pred HHHHHHHhcccchhHHHHHhccCChhhHHHHHHHHHHHHHHHHhc
Confidence 3466777777777788887877876 4566777777777666543
No 202
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=24.04 E-value=1.8e+02 Score=19.88 Aligned_cols=7 Identities=0% Similarity=-0.415 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 043681 81 APVAIVL 87 (101)
Q Consensus 81 k~~iii~ 87 (101)
|+|-.+|
T Consensus 152 Klyr~LG 158 (170)
T PF09548_consen 152 KLYRSLG 158 (170)
T ss_pred cHHHHHH
Confidence 4433333
No 203
>PF12455 Dynactin: Dynein associated protein ; InterPro: IPR022157 This domain family is found in eukaryotes, and is approximately 280 amino acids in length. The family is found in association with PF01302 from PFAM. There is a single completely conserved residue E that may be functionally important. Dynactin has been associated with Dynein, a kinesin protein which is involved in organelle transport, mitotic spindle assembly and chromosome segregation. Dynactin anchors Dynein to specific subcellular structures.
Probab=23.93 E-value=3.1e+02 Score=20.42 Aligned_cols=57 Identities=14% Similarity=0.234 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHhcc-cchhhhhhhhhhhhHhhHHHHHHHHHHHHH
Q 043681 17 RNIAKLNDELYEVHQIMTRNVQEVLGVG-EKLDQVSEMSSRLTSESRIYADKAKDLNRQ 74 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~Ni~~il~Rg-e~Le~L~~ks~~L~~~s~~f~~~a~kl~r~ 74 (101)
+.+..++.-++-+. +-..=+.-+++.| ..-+++-.+.+.+.+++..-+..++|++|+
T Consensus 216 ~~~~~~~~~ld~~~-~~~~~l~~~lq~~~~~~~~~~~~l~~l~~~~~~~k~~~~Ki~R~ 273 (274)
T PF12455_consen 216 DRASLLQSALDSMA-ANLARLKTLLQSGISETSELFKLLQDLITQARSAKQACKKIRRR 273 (274)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555566666653 3344455777888 667778899999999999999999999886
No 204
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=23.88 E-value=2e+02 Score=22.58 Aligned_cols=38 Identities=11% Similarity=0.257 Sum_probs=31.6
Q ss_pred HHHHHHHhCCcHHHhHHHHHHHHHHHHHHHHHHhHHHH
Q 043681 3 IQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEV 40 (101)
Q Consensus 3 i~~~~~~y~d~~~~dki~~~~~~v~ev~~im~~Ni~~i 40 (101)
+++++..|+...+.++|.++..+++.+++-..+-|-.-
T Consensus 143 v~~L~~~F~~yksi~~I~~L~~~i~~l~~~L~~qI~~d 180 (383)
T PF04100_consen 143 VKELLEHFKPYKSIPQIAELSKRIDQLQNELKEQIFED 180 (383)
T ss_pred HHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888899999999999999888877766653
No 205
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=23.72 E-value=1.7e+02 Score=17.21 Aligned_cols=10 Identities=0% Similarity=0.172 Sum_probs=5.2
Q ss_pred hHhhHHHHHH
Q 043681 58 TSESRIYADK 67 (101)
Q Consensus 58 ~~~s~~f~~~ 67 (101)
.+.|..|-++
T Consensus 8 nETA~~FL~R 17 (60)
T PF06072_consen 8 NETATEFLRR 17 (60)
T ss_pred cccHHHHHHH
Confidence 3455666543
No 206
>PF08900 DUF1845: Domain of unknown function (DUF1845); InterPro: IPR014996 Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=23.61 E-value=2e+02 Score=20.76 Aligned_cols=30 Identities=10% Similarity=0.258 Sum_probs=25.4
Q ss_pred CCcHHHhHHHHHHHHHHHHHHHHHHhHHHH
Q 043681 11 QDTRTQRNIAKLNDELYEVHQIMTRNVQEV 40 (101)
Q Consensus 11 ~d~~~~dki~~~~~~v~ev~~im~~Ni~~i 40 (101)
+||-....+.+++++++++...|.+.++.+
T Consensus 56 DdPyAD~~L~~iEe~i~~~~~~l~~~~~~l 85 (217)
T PF08900_consen 56 DDPYADWWLLRIEEKINEARQELQELIARL 85 (217)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788899999999999999988877665
No 207
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=23.57 E-value=97 Score=21.55 Aligned_cols=21 Identities=5% Similarity=-0.020 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 043681 79 KWAPVAIVLGVVFIVFWLKTK 99 (101)
Q Consensus 79 ~~k~~iii~~vv~~~i~i~~~ 99 (101)
|.|+++.+.+.+++.+++++|
T Consensus 118 ~nklilaisvtvv~~iliii~ 138 (154)
T PF14914_consen 118 NNKLILAISVTVVVMILIIIF 138 (154)
T ss_pred cchhHHHHHHHHHHHHHHHHH
Confidence 345555555555545555544
No 208
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=23.33 E-value=2.4e+02 Score=18.88 Aligned_cols=21 Identities=14% Similarity=0.447 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhH
Q 043681 17 RNIAKLNDELYEVHQIMTRNV 37 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~Ni 37 (101)
.++..+..+++.++..+.+++
T Consensus 87 ~kv~els~~L~~~~~lL~~~v 107 (131)
T PF10158_consen 87 EKVNELSQQLSRCQSLLNQTV 107 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666655554443
No 209
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=23.20 E-value=90 Score=21.47 Aligned_cols=10 Identities=20% Similarity=0.152 Sum_probs=3.8
Q ss_pred HHHHHHHHhh
Q 043681 91 FIVFWLKTKL 100 (101)
Q Consensus 91 ~~~i~i~~~~ 100 (101)
++++++.+|+
T Consensus 30 iL~~lL~~~l 39 (173)
T PRK13453 30 VLLALLKKFA 39 (173)
T ss_pred HHHHHHHHHH
Confidence 3333333443
No 210
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=23.00 E-value=1.2e+02 Score=18.61 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHhcccchh
Q 043681 22 LNDELYEVHQIMTRNVQEVLGVGEKLD 48 (101)
Q Consensus 22 ~~~~v~ev~~im~~Ni~~il~Rge~Le 48 (101)
-+.+++.+-+.+.+-|...|.+|++++
T Consensus 18 s~~~v~~vv~~~~~~i~~~L~~g~~V~ 44 (96)
T TIGR00987 18 SKREAKELVELFFEEIRRALENGEQVK 44 (96)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 356778888888888888999998765
No 211
>PLN02255 H(+) -translocating inorganic pyrophosphatase
Probab=22.65 E-value=2.9e+02 Score=24.11 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=25.2
Q ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 043681 54 SSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFIVFW 95 (101)
Q Consensus 54 s~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv~~~i~ 95 (101)
++.|++.|...+..|.- ..-+.||...+++.++.++++
T Consensus 70 ~~~m~~Ia~~I~eGA~a----fL~rqyk~i~~~~vv~~~~l~ 107 (765)
T PLN02255 70 VAKCAEIQNAISEGATS----FLFTEYKYVGIFMVIFAAVIF 107 (765)
T ss_pred CHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888777754 344567777766666555553
No 212
>PHA02902 putative IMV membrane protein; Provisional
Probab=22.63 E-value=1.2e+02 Score=18.20 Aligned_cols=11 Identities=0% Similarity=0.344 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 043681 86 VLGVVFIVFWL 96 (101)
Q Consensus 86 i~~vv~~~i~i 96 (101)
+..++|.+++.
T Consensus 12 ~v~Ivclliya 22 (70)
T PHA02902 12 IVIIFCLLIYA 22 (70)
T ss_pred HHHHHHHHHHH
Confidence 33333433433
No 213
>PHA03029 hypothetical protein; Provisional
Probab=22.54 E-value=2e+02 Score=17.79 Aligned_cols=25 Identities=0% Similarity=0.011 Sum_probs=19.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHh
Q 043681 75 ALIRKWAPVAIVLGVVFIVFWLKTK 99 (101)
Q Consensus 75 ~~w~~~k~~iii~~vv~~~i~i~~~ 99 (101)
.|.-|+-.+++-..++..+.++..|
T Consensus 53 ywflnf~fwllp~al~a~fyffsiw 77 (92)
T PHA03029 53 YWFLNFLFWLLPFALAAAFYFFSIW 77 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6888999888887777777666555
No 214
>COG5547 Small integral membrane protein [Function unknown]
Probab=22.53 E-value=1.2e+02 Score=17.78 Aligned_cols=11 Identities=18% Similarity=0.271 Sum_probs=6.0
Q ss_pred HHHhHHHHHHH
Q 043681 76 LIRKWAPVAIV 86 (101)
Q Consensus 76 ~w~~~k~~iii 86 (101)
|.+.+|+-++-
T Consensus 3 flk~fkypIIg 13 (62)
T COG5547 3 FLKKFKYPIIG 13 (62)
T ss_pred HHHHhccchHH
Confidence 55666655443
No 215
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=22.36 E-value=2.2e+02 Score=18.03 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=18.2
Q ss_pred cccchhhhhhhhhhhhHhhHHHHHHHHHHHHH
Q 043681 43 VGEKLDQVSEMSSRLTSESRIYADKAKDLNRQ 74 (101)
Q Consensus 43 Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~ 74 (101)
..+-+.+|.++.+.+....+.+.++-..++.+
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~ 96 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQ 96 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666665555555544
No 216
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=22.18 E-value=1.4e+02 Score=15.92 Aligned_cols=14 Identities=14% Similarity=0.126 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhh
Q 043681 87 LGVVFIVFWLKTKL 100 (101)
Q Consensus 87 ~~vv~~~i~i~~~~ 100 (101)
..+|+.+++-.||+
T Consensus 25 lifvl~vLFssYff 38 (39)
T PRK00753 25 LVFVLGILFSSYFF 38 (39)
T ss_pred HHHHHHHHHHhhcc
Confidence 33444455555553
No 217
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=22.16 E-value=74 Score=18.56 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=12.8
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 043681 78 RKWAPVAIVLGVVFIVFWLK 97 (101)
Q Consensus 78 ~~~k~~iii~~vv~~~i~i~ 97 (101)
+++|..++++++|.++-+..
T Consensus 3 rg~r~~~~~ggfVg~iG~a~ 22 (58)
T PF15061_consen 3 RGWRYALFVGGFVGLIGAAL 22 (58)
T ss_pred ccccchhhHHHHHHHHHHHH
Confidence 45667777777777664443
No 218
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=22.12 E-value=2.7e+02 Score=21.75 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=9.5
Q ss_pred cchhhhhhhhhhhhHhhHHH
Q 043681 45 EKLDQVSEMSSRLTSESRIY 64 (101)
Q Consensus 45 e~Le~L~~ks~~L~~~s~~f 64 (101)
.++++++++.++|.+.....
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i 163 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEI 163 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 34455555555555444433
No 219
>PF03907 Spo7: Spo7-like protein; InterPro: IPR005605 Saccharomyces cerevisiae (Baker's yeast) Spo7 P18410 from SWISSPROT is an integral nuclear/ER membrane protein of unknown function, required for normal nuclear envelope morphology and sporulation [].
Probab=22.08 E-value=3.2e+02 Score=19.93 Aligned_cols=34 Identities=6% Similarity=-0.014 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 043681 64 YADKAKDLNRQALIRKWAPVAIVLGVVFIVFWLKT 98 (101)
Q Consensus 64 f~~~a~kl~r~~~w~~~k~~iii~~vv~~~i~i~~ 98 (101)
.+.++..++.+-| ++.-+..+++++++++.+-.|
T Consensus 17 LR~q~~~lr~rrr-kyt~FL~~L~~~i~~~~y~lf 50 (207)
T PF03907_consen 17 LRQQYLQLRARRR-KYTFFLSLLCLWIAFFFYALF 50 (207)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 4555556655443 333344444444444444433
No 220
>PF01998 DUF131: Protein of unknown function DUF131; InterPro: IPR002849 This archaebacterial protein family has no known function. The proteins are predicted to contain two transmembrane helices.
Probab=21.87 E-value=1.9e+02 Score=17.08 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 043681 84 AIVLGVVFIVFWLKTK 99 (101)
Q Consensus 84 iii~~vv~~~i~i~~~ 99 (101)
.++.++++.++++.+|
T Consensus 48 ~~ilaiil~i~~~l~~ 63 (64)
T PF01998_consen 48 AMILAIILMILALLLF 63 (64)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 221
>COG4640 Predicted membrane protein [Function unknown]
Probab=21.80 E-value=85 Score=25.38 Aligned_cols=6 Identities=0% Similarity=-0.025 Sum_probs=2.1
Q ss_pred HHHHHH
Q 043681 93 VFWLKT 98 (101)
Q Consensus 93 ~i~i~~ 98 (101)
+|++.+
T Consensus 64 lii~~~ 69 (465)
T COG4640 64 LIIILF 69 (465)
T ss_pred HHHHHH
Confidence 333333
No 222
>PF06238 Borrelia_lipo_2: Borrelia burgdorferi BBR25 lipoprotein; InterPro: IPR009358 This entry consists of a number of lipoproteins conserved in Borrelia species [].
Probab=21.78 E-value=2.4e+02 Score=18.40 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=5.0
Q ss_pred HHHHHHHHHHhH
Q 043681 26 LYEVHQIMTRNV 37 (101)
Q Consensus 26 v~ev~~im~~Ni 37 (101)
++|+++|..-|+
T Consensus 61 l~eIq~Ilk~ni 72 (111)
T PF06238_consen 61 LEEIQDILKYNI 72 (111)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 223
>PRK14710 hypothetical protein; Provisional
Probab=21.77 E-value=1.4e+02 Score=18.29 Aligned_cols=12 Identities=17% Similarity=0.586 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 043681 82 PVAIVLGVVFIV 93 (101)
Q Consensus 82 ~~iii~~vv~~~ 93 (101)
+.+.+..+++++
T Consensus 11 m~ififaiii~v 22 (86)
T PRK14710 11 MIIFIFAIIIIV 22 (86)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 224
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=21.76 E-value=1.2e+02 Score=23.04 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhh---hhhhHhhHHHHHHHHHH
Q 043681 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMS---SRLTSESRIYADKAKDL 71 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks---~~L~~~s~~f~~~a~kl 71 (101)
++..+-..||+.+-+.|.+-+++++++|+.++.-.-+- .+|+--+..+++...++
T Consensus 92 eNFkRs~eEVd~LM~L~~~k~~~~~~~~~~~~~~gvririiGdlslL~~~l~k~i~~i 149 (271)
T KOG1602|consen 92 ENFKRSPEEVDGLMDLALEKIERLLEQGEKLDKYGVRIRVIGDLSLLPESLRKAIKKI 149 (271)
T ss_pred hhhCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCeEEEEEcchhhCCHHHHHHHHHH
Confidence 44455567899999999999999999998776432221 33444444454444444
No 225
>PF04612 T2SM: Type II secretion system (T2SS), protein M; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport; PDB: 1UV7_A.
Probab=21.58 E-value=31 Score=22.98 Aligned_cols=6 Identities=83% Similarity=1.309 Sum_probs=0.0
Q ss_pred HHHHHH
Q 043681 85 IVLGVV 90 (101)
Q Consensus 85 ii~~vv 90 (101)
++++++
T Consensus 20 ~~~~~~ 25 (160)
T PF04612_consen 20 LVLGVV 25 (160)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 333333
No 226
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=21.12 E-value=1.4e+02 Score=18.09 Aligned_cols=26 Identities=12% Similarity=0.392 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhHHHHHhcccchh
Q 043681 23 NDELYEVHQIMTRNVQEVLGVGEKLD 48 (101)
Q Consensus 23 ~~~v~ev~~im~~Ni~~il~Rge~Le 48 (101)
+.+++++-+.+.+.|...|.+|+++.
T Consensus 19 ~~~v~~vv~~~~~~i~~~L~~g~~V~ 44 (94)
T TIGR00988 19 AKDVEDAVKTMLEHMASALAQGDRIE 44 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 44677777888888888888898765
No 227
>cd00633 Secretoglobin Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with encoding genes sharing substantial sequence similarity. Their family subunits may be grouped into five subfamilies, A-E. Uteroglobin (subfamily A), which is identical to Clara cell protein (CC10), forms a globular shaped homodimer with a large hydrophobic pocket located between the two dimers. The uteroglobin monomer structure is composed of four alpha helices that do not form a canonical four helix-bundle motif but rather a boomerang-shaped structure in which helices H1, H3, and H4 are able to bind a homodimeric partner. The hydrophobic pocket binds steroids, particularly progesterone, with high specificity. However, the true biological function of uteroglobin is poorly understood. In mammals, uteroglobin has immunosuppressive and anti-inflammatory properties through the inhibition of phospholipase A2. The other four main subfamilies of secretoglobins are found in heterodimeri
Probab=21.04 E-value=1.8e+02 Score=16.67 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=26.9
Q ss_pred HHHHHHHhCCcH-HHhHHHHHHHHHHHHHHHHHHhHHHHHh
Q 043681 3 IQKTKKLYQDTR-TQRNIAKLNDELYEVHQIMTRNVQEVLG 42 (101)
Q Consensus 3 i~~~~~~y~d~~-~~dki~~~~~~v~ev~~im~~Ni~~il~ 42 (101)
.+...+.|+.|+ ..+...++++=+++...--+.|+-++++
T Consensus 19 y~~~L~~f~~~~~~~~A~~~lK~C~d~~~~e~k~~~~~~m~ 59 (67)
T cd00633 19 YKAELEKFNATPEAVEAKEKLKQCVDEQSLETKENIAKLLE 59 (67)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Confidence 345567786544 5678888888777776666666666654
No 228
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=20.93 E-value=40 Score=22.12 Aligned_cols=10 Identities=10% Similarity=0.079 Sum_probs=4.7
Q ss_pred HHhHHHHHHH
Q 043681 77 IRKWAPVAIV 86 (101)
Q Consensus 77 w~~~k~~iii 86 (101)
||..-.-+.+
T Consensus 41 wK~I~la~~L 50 (115)
T PF05915_consen 41 WKSIALAVFL 50 (115)
T ss_pred HHHHHHHHHH
Confidence 5655444333
No 229
>PTZ00478 Sec superfamily; Provisional
Probab=20.91 E-value=2.2e+02 Score=17.65 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=28.8
Q ss_pred hhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHh
Q 043681 51 SEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIV----LGVVFIVFWLKTK 99 (101)
Q Consensus 51 ~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii----~~vv~~~i~i~~~ 99 (101)
.+--+..-+...+|-+.|+++=++.--.+.|-+.-+ +.-++++-++.|+
T Consensus 13 m~~~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kiakat~iGf~imG~IGy~ 65 (81)
T PTZ00478 13 SNPVGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIAYACSVGFFIMGFIGYS 65 (81)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444566677888999999998877654444433333 3333344445444
No 230
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=20.85 E-value=4.6e+02 Score=21.24 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhccc
Q 043681 19 IAKLNDELYEVHQIMTRNVQEVLGVGE 45 (101)
Q Consensus 19 i~~~~~~v~ev~~im~~Ni~~il~Rge 45 (101)
+..++...++-...+ +.+-.++..|+
T Consensus 122 ~~~~~~~~~~y~~~~-~~l~~l~~~~~ 147 (554)
T PRK15041 122 AAEIKRNYDIYHNAL-AELIQLLGAGK 147 (554)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHCCC
Confidence 566666666665543 34444444443
No 231
>CHL00031 psbT photosystem II protein T
Probab=20.66 E-value=1.1e+02 Score=15.87 Aligned_cols=6 Identities=0% Similarity=0.252 Sum_probs=2.3
Q ss_pred HHHHHH
Q 043681 84 AIVLGV 89 (101)
Q Consensus 84 iii~~v 89 (101)
+++++.
T Consensus 8 fll~~t 13 (33)
T CHL00031 8 FLLVST 13 (33)
T ss_pred HHHHHH
Confidence 333333
No 232
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=20.44 E-value=3.6e+02 Score=19.89 Aligned_cols=65 Identities=17% Similarity=0.295 Sum_probs=52.3
Q ss_pred HHhCCcHHHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHH
Q 043681 8 KLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQAL 76 (101)
Q Consensus 8 ~~y~d~~~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~ 76 (101)
..| .|...+.+.++...+++...-..+..+++-.+ |+.-..--.+..+.+..|..-.+++..+.|
T Consensus 166 ~TY-Tpe~v~Al~~Ir~~L~~~~~~~e~~~~~a~~~---L~~Ye~lg~~F~~ivreY~~l~~~ie~k~W 230 (238)
T PF14735_consen 166 DTY-TPETVPALRKIRDHLEEAIEELEQELQKARQR---LESYEGLGPEFEEIVREYTDLQQEIENKRW 230 (238)
T ss_pred ccC-CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcccHhHHHHHHHHHHHHHHHHHHHH
Confidence 346 47788999999999999999999988888776 666666666788888888888888887776
No 233
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=20.38 E-value=1.2e+02 Score=21.18 Aligned_cols=17 Identities=6% Similarity=0.165 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 043681 83 VAIVLGVVFIVFWLKTK 99 (101)
Q Consensus 83 ~iii~~vv~~~i~i~~~ 99 (101)
|+++++.+++++|+++.
T Consensus 99 ~Vl~g~s~l~i~yfvir 115 (163)
T PF06679_consen 99 YVLVGLSALAILYFVIR 115 (163)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555544
No 234
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=20.38 E-value=2.2e+02 Score=19.03 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=25.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhh
Q 043681 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEM 53 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~k 53 (101)
.|.++++|..|++.-..|-..|.- |+|......+...
T Consensus 2 ~DrlTQLQd~ldqL~~~f~~si~~-l~~~a~~~~~~~~ 38 (144)
T PF11221_consen 2 ADRLTQLQDCLDQLAEQFCNSIGY-LQRDAPPSPLSPN 38 (144)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH-HHHTTGGGG----
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhh-hccCCCCCCCCCC
Confidence 489999999999999999998874 4555555544433
No 235
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=20.26 E-value=1.7e+02 Score=18.34 Aligned_cols=13 Identities=23% Similarity=0.307 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHH
Q 043681 79 KWAPVAIVLGVVF 91 (101)
Q Consensus 79 ~~k~~iii~~vv~ 91 (101)
+.|-.+|+..+++
T Consensus 32 ~lKrlliivvVvV 44 (93)
T PF08999_consen 32 NLKRLLIIVVVVV 44 (93)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccceEEEEEEeee
Confidence 5555555444433
No 236
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=20.21 E-value=1.2e+02 Score=17.53 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=18.4
Q ss_pred ccchhhhhhhhhhhhHhhHHHHHHHHH
Q 043681 44 GEKLDQVSEMSSRLTSESRIYADKAKD 70 (101)
Q Consensus 44 ge~Le~L~~ks~~L~~~s~~f~~~a~k 70 (101)
.+||+.|+.+-++.+..+.....+++.
T Consensus 31 EqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 31 EQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777666654
No 237
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.20 E-value=4.1e+02 Score=20.40 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHH
Q 043681 18 NIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKA 68 (101)
Q Consensus 18 ki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a 68 (101)
.+.+-.++++...+-....+..+-++.+.|.........+.+....+-...
T Consensus 212 ~~~~~~~~l~~~~~~l~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~ll~~~ 262 (359)
T COG1463 212 SLAAASDQLDRLLDNLATLTAALAARRDALDDALAALSALAATVNDLLAEN 262 (359)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444555555555556666666777777777777777776666665554
No 238
>PRK07668 hypothetical protein; Validated
Probab=20.11 E-value=3.8e+02 Score=20.03 Aligned_cols=55 Identities=7% Similarity=0.036 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhH
Q 043681 23 NDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKW 80 (101)
Q Consensus 23 ~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~ 80 (101)
.+|.+++-+-|.+.+-+.-++|..-+++-.. +-+.-|..+-+...+ .++-|+.+.
T Consensus 24 eeeieeiL~Ei~~hLlEgQk~GkTA~~IfG~--sPk~yA~EL~~~~~~-~~~~~~~~l 78 (254)
T PRK07668 24 EEDIESFLEDAELHLIEGEKDGKTVEDIFGD--SPKEYANELVKEMEV-DRKENIKLI 78 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHhCC--CHHHHHHHHhcccCC-CcchHHHHH
Confidence 5677788888888888888999999998886 233444544443322 333444443
No 239
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=20.11 E-value=63 Score=22.57 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 043681 64 YADKAKDLNRQALIR 78 (101)
Q Consensus 64 f~~~a~kl~r~~~w~ 78 (101)
.++.-...+|.-.|+
T Consensus 120 LKkKEae~kr~K~Ck 134 (159)
T PF06789_consen 120 LKKKEAELKRSKVCK 134 (159)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555666655444
No 240
>PHA00350 putative assembly protein
Probab=20.05 E-value=82 Score=25.10 Aligned_cols=30 Identities=10% Similarity=-0.163 Sum_probs=17.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 043681 70 DLNRQALIRKWAPVAIVLGVVFIVFWLKTKL 100 (101)
Q Consensus 70 kl~r~~~w~~~k~~iii~~vv~~~i~i~~~~ 100 (101)
.-.++.-|++-+++++++++ ++++.+.+++
T Consensus 215 ~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~ 244 (399)
T PHA00350 215 VGEAKALDINPKWKSLVALL-LGILSFGYYF 244 (399)
T ss_pred ccccccchhchHHHHHHHHH-HHHhhhhhhh
Confidence 45667888888886444444 3334444443
Done!