Query 043681
Match_columns 101
No_of_seqs 105 out of 767
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 12:24:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043681.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043681hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hd7_A Vesicle-associated memb 100.0 1.1E-32 3.6E-37 174.9 11.5 85 15-99 3-87 (91)
2 2kog_A Vesicle-associated memb 100.0 7E-32 2.4E-36 178.5 4.8 86 14-99 30-115 (119)
3 2nps_A VAMP-4, vesicle-associa 99.9 6E-29 2E-33 152.3 3.2 73 11-83 2-74 (74)
4 1sfc_A VAMP 2, protein (synapt 99.9 5.2E-27 1.8E-31 150.0 7.3 69 15-83 28-96 (96)
5 1l4a_A Synaptobrevin; snare, s 99.9 5.5E-28 1.9E-32 150.0 2.4 71 12-82 10-80 (80)
6 4b93_A Vesicle-associated memb 99.9 7.1E-29 2.4E-33 174.7 -7.9 80 2-81 110-189 (189)
7 2nut_C Vesicle-trafficking pro 99.9 4.7E-27 1.6E-31 165.8 -2.6 78 2-79 119-196 (196)
8 1n7s_A Vesicle-associated memb 99.9 2.8E-24 9.4E-29 127.8 6.7 62 15-76 2-63 (63)
9 3b5n_A Synaptobrevin homolog 1 99.9 5.1E-24 1.8E-28 125.9 7.1 60 17-76 2-61 (61)
10 1gl2_A Endobrevin; membrane pr 99.9 5E-23 1.7E-27 123.1 5.1 63 11-73 3-65 (65)
11 3kyq_A YKT6, synaptobrevin hom 99.8 3.1E-22 1E-26 142.1 -3.8 72 2-73 123-194 (199)
12 1urq_A M-tomosyn isoform; tran 99.8 1.6E-19 5.5E-24 107.2 5.8 59 17-75 4-62 (63)
13 3zym_A Phosphatidylinositol-bi 98.6 2.3E-08 7.9E-13 74.7 2.9 33 15-47 278-310 (310)
14 3fie_C Fragment of vesicle-ass 98.5 1.9E-11 6.4E-16 65.6 -10.7 32 14-45 6-37 (38)
15 3hd7_B Syntaxin-1A; membrane p 97.4 0.0072 2.4E-07 38.5 11.9 44 16-59 20-63 (109)
16 3hd7_A Vesicle-associated memb 96.2 0.094 3.2E-06 32.2 9.8 79 16-98 11-89 (91)
17 2kog_A Vesicle-associated memb 91.3 0.22 7.5E-06 32.1 3.6 78 16-97 39-116 (119)
18 1t3j_A Mitofusin 1; coiled coi 87.1 2.4 8E-05 26.4 6.0 48 17-64 36-83 (96)
19 1rh5_B Preprotein translocase 75.2 1.6 5.6E-05 25.8 2.0 49 46-94 4-52 (74)
20 2ww9_B Protein transport prote 74.5 2.7 9.2E-05 25.3 2.8 44 50-93 21-64 (80)
21 1txp_A HnRNP C, heterogeneous 73.1 2.6 8.7E-05 20.3 2.0 24 21-48 3-26 (28)
22 2wwb_B SEC61gamma, protein tra 72.3 1.3 4.5E-05 25.8 1.1 48 45-92 2-49 (68)
23 1jth_B Syntaxin 1A; coiled-coi 72.1 12 0.0004 21.6 7.1 44 16-59 9-52 (77)
24 1n7s_A Vesicle-associated memb 70.9 11 0.00039 20.9 7.2 53 24-76 4-56 (63)
25 1urq_A M-tomosyn isoform; tran 68.4 14 0.00047 20.9 6.4 49 17-65 11-59 (63)
26 1sfc_A VAMP 2, protein (synapt 67.0 19 0.00064 21.9 7.8 55 23-77 29-83 (96)
27 3b5n_A Synaptobrevin homolog 1 66.5 14 0.00049 20.4 7.0 52 25-76 3-54 (61)
28 1n7s_B Syntaxin 1A; neuronal s 66.4 15 0.00052 20.6 6.0 44 16-59 11-54 (68)
29 3b5n_B Protein SSO1; snare com 63.1 18 0.00062 20.4 8.1 45 16-60 9-53 (69)
30 2nps_B Syntaxin 13, vesicle-as 62.7 19 0.00064 20.4 7.7 44 16-59 5-48 (71)
31 1aq5_A Matrilin-1, CMP, cartil 60.6 14 0.0005 19.8 3.7 37 11-47 6-42 (47)
32 1nhl_A Synaptosomal-associated 59.8 19 0.00064 19.5 5.2 40 21-60 4-43 (54)
33 2ww9_B Protein transport prote 57.7 27 0.00094 20.7 5.1 58 42-99 6-67 (80)
34 1l4a_C S-SNAP25 fusion protein 56.9 29 0.00098 20.7 6.0 46 15-60 25-70 (83)
35 1gl2_B Syntaxin 7; membrane pr 55.6 25 0.00085 19.6 7.2 45 16-60 8-52 (65)
36 2ygg_A Sodium/hydrogen exchang 55.5 14 0.00047 21.6 3.2 23 23-45 6-28 (70)
37 3h3g_B Parathyroid hormone-rel 54.5 9.7 0.00033 17.7 2.0 12 69-80 5-16 (24)
38 3b5n_C Protein transport prote 50.3 34 0.0012 19.6 7.7 58 15-72 10-67 (70)
39 2oxj_A Hybrid alpha/beta pepti 49.1 24 0.00084 17.6 3.3 26 46-71 2-27 (34)
40 1gl2_A Endobrevin; membrane pr 47.6 35 0.0012 19.0 6.2 53 23-75 8-60 (65)
41 1ccd_A Clara cell 17 KD protei 46.7 26 0.00088 20.4 3.6 40 4-43 24-64 (77)
42 1sfc_B Protein (syntaxin 1A), 45.1 44 0.0015 19.4 7.7 44 16-59 20-63 (83)
43 1utg_A Uteroglobin; steroid bi 45.0 22 0.00076 20.3 3.1 40 4-43 22-62 (70)
44 1kd8_B GABH BLL, GCN4 acid bas 44.7 30 0.001 17.5 3.3 26 47-72 3-28 (36)
45 3mp7_B Preprotein translocase 42.9 9.9 0.00034 21.5 1.2 44 50-93 4-47 (61)
46 1l4a_A Synaptobrevin; snare, s 42.1 50 0.0017 19.1 5.5 52 16-67 21-72 (80)
47 3c3f_A Alpha/beta peptide with 41.8 33 0.0011 17.1 3.3 24 47-70 3-26 (34)
48 1dn1_B Syntaxin 1A, syntaxin b 41.7 33 0.0011 24.3 4.2 42 17-58 200-241 (267)
49 1y4m_A HERV-FRD_6P24.1 proviru 40.8 39 0.0013 18.5 3.5 22 16-37 6-27 (53)
50 2nps_A VAMP-4, vesicle-associa 40.4 51 0.0017 18.8 4.9 48 28-75 12-59 (74)
51 4e81_A Chaperone protein DNAK; 39.5 53 0.0018 22.6 4.8 22 46-67 192-213 (219)
52 1n7s_C SNAP-25A; neuronal snar 38.8 57 0.002 18.9 7.4 47 14-60 20-66 (79)
53 3fym_A Putative uncharacterize 37.3 8.4 0.00029 24.2 0.4 17 77-93 102-118 (130)
54 1mof_A Moloney murine leukemia 36.5 50 0.0017 18.2 3.5 22 16-37 8-29 (55)
55 2bni_A General control protein 35.9 43 0.0015 16.7 3.2 13 48-60 4-16 (34)
56 2yko_A LINE-1 ORF1P; RNA-bindi 35.7 57 0.0019 23.2 4.5 39 16-54 12-50 (233)
57 3hd7_B Syntaxin-1A; membrane p 35.4 76 0.0026 19.4 13.0 9 30-38 47-55 (109)
58 2l9u_A Receptor tyrosine-prote 34.4 48 0.0016 16.7 3.4 20 80-99 8-27 (40)
59 3lof_A Heat shock 70 kDa prote 31.5 86 0.003 18.8 5.7 44 15-64 35-78 (113)
60 1utr_A Uteroglobin; clara cell 30.8 32 0.0011 20.8 2.3 40 4-43 43-83 (96)
61 2pjw_V Vacuolar protein sortin 30.7 85 0.0029 18.9 4.2 41 15-55 31-71 (91)
62 3t97_C Nuclear pore glycoprote 30.5 39 0.0013 19.1 2.5 14 16-29 11-24 (64)
63 3vmt_A Monofunctional glycosyl 28.4 31 0.0011 24.9 2.1 31 69-99 25-55 (263)
64 2lx0_A Membrane fusion protein 28.0 46 0.0016 15.9 2.1 14 85-98 8-21 (32)
65 2kfe_A Meucin-24; alpha-helix, 27.2 50 0.0017 15.5 2.1 19 17-35 5-23 (26)
66 1ud0_A HSC70, 70 kDa heat-shoc 27.1 1E+02 0.0035 18.3 6.3 45 15-65 30-74 (113)
67 2p32_A Heat shock 70 kDa prote 27.0 1.1E+02 0.0038 18.6 5.5 44 17-66 46-89 (120)
68 1sfc_D Protein (SNAP-25B), pro 26.8 1E+02 0.0034 18.0 5.9 43 17-59 29-71 (87)
69 1kd8_A GABH AIV, GCN4 acid bas 26.0 71 0.0024 16.1 3.2 11 49-59 5-15 (36)
70 4av3_A K(+)-stimulated pyropho 25.9 1.5E+02 0.0052 24.5 6.0 40 52-95 39-78 (735)
71 1zkr_A Major allergen I polype 25.6 1.1E+02 0.0038 20.3 4.3 40 4-43 23-64 (153)
72 2xus_A Breast cancer metastasi 25.6 39 0.0013 18.3 1.7 16 16-31 31-46 (49)
73 2cly_A ATP synthase B chain, m 25.2 1.7E+02 0.0059 20.2 7.9 41 17-57 84-124 (214)
74 1ykh_B RNA polymerase II holoe 25.0 1E+02 0.0035 19.6 4.0 34 16-50 2-35 (132)
75 1pi7_A VPU protein, U ORF prot 23.5 81 0.0028 15.8 2.6 16 84-99 7-22 (36)
76 3c98_B Syntaxin-1A; protein co 23.4 95 0.0033 20.8 3.9 43 16-58 211-253 (279)
77 3rhi_A DNA-binding protein HU; 21.9 91 0.0031 18.2 3.1 26 23-48 21-46 (93)
78 3ghg_A Fibrinogen alpha chain; 21.4 2.2E+02 0.0076 22.7 5.9 13 17-29 64-76 (562)
79 3zx6_A HAMP, methyl-accepting 21.2 58 0.002 23.6 2.5 13 47-59 285-297 (341)
80 2hy6_A General control protein 21.1 90 0.0031 15.5 3.2 25 47-71 3-27 (34)
81 3arc_T Photosystem II reaction 21.0 88 0.003 15.3 2.9 13 83-95 7-19 (32)
82 3lcn_C MRNA transport factor G 20.5 85 0.0029 14.9 3.2 23 15-37 4-26 (29)
No 1
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=100.00 E-value=1.1e-32 Score=174.95 Aligned_cols=85 Identities=20% Similarity=0.283 Sum_probs=79.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 043681 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFIVF 94 (101)
Q Consensus 15 ~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv~~~i 94 (101)
++|++++++++|+||+++|++||+++|+|||+||.|+++|++|+++|..|+++|++++|+|||+|+|+++++++++++++
T Consensus 3 ~~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il 82 (91)
T 3hd7_A 3 HMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIIL 82 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999988888776
Q ss_pred HHHHh
Q 043681 95 WLKTK 99 (101)
Q Consensus 95 ~i~~~ 99 (101)
++++.
T Consensus 83 ~ii~~ 87 (91)
T 3hd7_A 83 IIIIV 87 (91)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 2
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=99.97 E-value=7e-32 Score=178.52 Aligned_cols=86 Identities=20% Similarity=0.292 Sum_probs=80.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 043681 14 RTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFIV 93 (101)
Q Consensus 14 ~~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv~~~ 93 (101)
.+.|++.+++.+|+||+++|++||+++|+|||+||+|++||++|++.|..|+++|++++|+|||+|+|++++++++++++
T Consensus 30 ~~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~ii 109 (119)
T 2kog_A 30 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAII 109 (119)
T ss_dssp SSCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999998888877
Q ss_pred HHHHHh
Q 043681 94 FWLKTK 99 (101)
Q Consensus 94 i~i~~~ 99 (101)
+++++.
T Consensus 110 i~iIi~ 115 (119)
T 2kog_A 110 LIIIIV 115 (119)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 766654
No 3
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.95 E-value=6e-29 Score=152.27 Aligned_cols=73 Identities=23% Similarity=0.409 Sum_probs=62.7
Q ss_pred CCcHHHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHH
Q 043681 11 QDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPV 83 (101)
Q Consensus 11 ~d~~~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~ 83 (101)
++|++.|++.+++.+|+||++||.+||+++|+|||+|+.|+++|++|++.|..|+++|++++|+|||+|+|++
T Consensus 2 ~~~~~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ww~n~K~~ 74 (74)
T 2nps_A 2 SMGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIK 74 (74)
T ss_dssp ----CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4678899999999999999999999999999999999999999999999999999999999999999999964
No 4
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.94 E-value=5.2e-27 Score=150.02 Aligned_cols=69 Identities=22% Similarity=0.346 Sum_probs=65.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHH
Q 043681 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPV 83 (101)
Q Consensus 15 ~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~ 83 (101)
+.|++.+++.+|+||++||++||+++|+|||+|+.|+++|++|++.|..|+++|++++|+|||+|+|++
T Consensus 28 ~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwkn~K~~ 96 (96)
T 1sfc_A 28 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM 96 (96)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 479999999999999999999999999999999999999999999999999999999999999999974
No 5
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.94 E-value=5.5e-28 Score=149.96 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=63.0
Q ss_pred CcHHHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHH
Q 043681 12 DTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAP 82 (101)
Q Consensus 12 d~~~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~ 82 (101)
+|.+.|++.+++.+|+||++||.+||+++|+|||+|+.|+++|++|++.|..|+++|++++|+|||+|||+
T Consensus 10 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~wwkn~K~ 80 (80)
T 1l4a_A 10 PVQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWWKNCKM 80 (80)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHCC------
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999984
No 6
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=99.92 E-value=7.1e-29 Score=174.73 Aligned_cols=80 Identities=18% Similarity=0.325 Sum_probs=47.1
Q ss_pred hHHHHHHHhCCcHHHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHH
Q 043681 2 FIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWA 81 (101)
Q Consensus 2 ~i~~~~~~y~d~~~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k 81 (101)
+|++.+++|+||++.|++.+++++|+||++||++||+++|+|||+||.|+++|++|++.|..|+++|++|+|+|||+|+|
T Consensus 110 ~l~~~~~~y~d~~~~d~l~~~~~~l~ev~~im~~Ni~~vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~mwwkn~K 189 (189)
T 4b93_A 110 VLAAQLKHHSENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNIK 189 (189)
T ss_dssp HHHHHHHHHHCC-------CCHHHHHTTTTCCEECCCCBCTTSSBCCCCEETTCC-------------------------
T ss_pred HHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999987
No 7
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=99.91 E-value=4.7e-27 Score=165.77 Aligned_cols=78 Identities=45% Similarity=0.650 Sum_probs=22.1
Q ss_pred hHHHHHHHhCCcHHHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHh
Q 043681 2 FIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRK 79 (101)
Q Consensus 2 ~i~~~~~~y~d~~~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~ 79 (101)
+|++++++|+||++.|++.+++.+|+||++||++||+++|+|||+||.|+++|++|++.|..|+++|++++|+|||++
T Consensus 119 ~l~~~~~~y~~~~~~d~l~~~~~~l~ev~~im~~ni~~vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~~~~~~~k 196 (196)
T 2nut_C 119 FIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAK 196 (196)
T ss_dssp HHHHHHTTTSCCC-----------------CCEEEHHHHC--------------------------------------
T ss_pred HHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999984
No 8
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=99.90 E-value=2.8e-24 Score=127.75 Aligned_cols=62 Identities=24% Similarity=0.386 Sum_probs=60.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHH
Q 043681 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQAL 76 (101)
Q Consensus 15 ~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~ 76 (101)
+.|++.+++.+|+||++||.+||+++|+|||+|+.|+++|++|++.|..|+++|++++|+||
T Consensus 2 ~~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 63 (63)
T 1n7s_A 2 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 63 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 46999999999999999999999999999999999999999999999999999999999998
No 9
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.90 E-value=5.1e-24 Score=125.91 Aligned_cols=60 Identities=20% Similarity=0.344 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHH
Q 043681 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQAL 76 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~ 76 (101)
|++.+++.+|+||++||++||+++|+|||+|+.|+++|++|++.|..|+++|++|+|+||
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 61 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 789999999999999999999999999999999999999999999999999999999998
No 10
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.87 E-value=5e-23 Score=123.07 Aligned_cols=63 Identities=25% Similarity=0.444 Sum_probs=52.9
Q ss_pred CCcHHHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHH
Q 043681 11 QDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNR 73 (101)
Q Consensus 11 ~d~~~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r 73 (101)
.+|++.|++.+++.+|+||++||.+||+++|+|||+|+.|+++|++|++.|..|+++|++|+|
T Consensus 3 ~~~~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~r 65 (65)
T 1gl2_A 3 HMSAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65 (65)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 367788999999999999999999999999999999999999999999999999999999986
No 11
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=99.81 E-value=3.1e-22 Score=142.08 Aligned_cols=72 Identities=26% Similarity=0.399 Sum_probs=68.9
Q ss_pred hHHHHHHHhCCcHHHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHH
Q 043681 2 FIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNR 73 (101)
Q Consensus 2 ~i~~~~~~y~d~~~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r 73 (101)
-+++.+.+|+||++.|++.+++++|+||++||++||+++|+|||+||.|++||++|+++|..|+++|+++++
T Consensus 123 ~l~~~m~~Y~dp~~~d~l~~~q~el~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~lns 194 (199)
T 3kyq_A 123 ALDGHLSRYQNPREADPMSKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNS 194 (199)
T ss_dssp THHHHHHHTTSGGGCCCCHHHHHHHHTCCCEEESSGGGTSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367889999999999999999999999999999999999999999999999999999999999999999995
No 12
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.79 E-value=1.6e-19 Score=107.20 Aligned_cols=59 Identities=15% Similarity=0.200 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHH
Q 043681 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQA 75 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~ 75 (101)
.++..+++++++|+++|.+|++++++|||+|+.|+++|++|.+.|..|.+.|++|++++
T Consensus 4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Ky 62 (63)
T 1urq_A 4 GGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKY 62 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47999999999999999999999999999999999999999999999999999999875
No 13
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=98.57 E-value=2.3e-08 Score=74.70 Aligned_cols=33 Identities=36% Similarity=0.566 Sum_probs=24.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHhcccch
Q 043681 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKL 47 (101)
Q Consensus 15 ~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~L 47 (101)
..|.+.++++||+||++||++||+++|+|||+|
T Consensus 278 p~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l 310 (310)
T 3zym_A 278 HMDRVRNLQSEVEGVKNIMTQNVERILARGENL 310 (310)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence 468999999999999999999999999999986
No 14
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=98.53 E-value=1.9e-11 Score=65.56 Aligned_cols=32 Identities=28% Similarity=0.355 Sum_probs=29.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHHHhccc
Q 043681 14 RTQRNIAKLNDELYEVHQIMTRNVQEVLGVGE 45 (101)
Q Consensus 14 ~~~dki~~~~~~v~ev~~im~~Ni~~il~Rge 45 (101)
++.|++.+++.+|+||++||.+||+++|+||+
T Consensus 6 ~~~d~l~~vq~qvdeVk~IM~~NIdkvLeRg~ 37 (38)
T 3fie_C 6 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDC 37 (38)
T ss_dssp CCCCSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred cchhHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence 34689999999999999999999999999997
No 15
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.41 E-value=0.0072 Score=38.47 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=38.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhH
Q 043681 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTS 59 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~ 59 (101)
.+.+.++++.+.|+.+++.+=-..+-+.|+.++.+++..++-.+
T Consensus 20 ~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~ 63 (109)
T 3hd7_B 20 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 63 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 47789999999999999999888899999999999888766554
No 16
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=96.23 E-value=0.094 Score=32.21 Aligned_cols=79 Identities=10% Similarity=0.111 Sum_probs=52.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 043681 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFIVFW 95 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv~~~i~ 95 (101)
++.++.++.-+.+.-+-+.++-+++=+=.++-++|.+.|......|...++..-==+-++ +-+.++++++++++++
T Consensus 11 q~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~----~iii~~iv~~il~ii~ 86 (91)
T 3hd7_A 11 QAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKM----MIILGVICAIILIIII 86 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 466777777777777777777777776677777888888888888888766543222222 2445555556666655
Q ss_pred HHH
Q 043681 96 LKT 98 (101)
Q Consensus 96 i~~ 98 (101)
+.+
T Consensus 87 ~~~ 89 (91)
T 3hd7_A 87 VYF 89 (91)
T ss_dssp HTT
T ss_pred HHH
Confidence 544
No 17
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=91.26 E-value=0.22 Score=32.09 Aligned_cols=78 Identities=10% Similarity=0.138 Sum_probs=51.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 043681 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFIVFW 95 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv~~~i~ 95 (101)
++.++.++..+.+.-+-+.++-+++=+=.++-++|.+.|......|...+++.-=-+-+++ -..++++++++++|+
T Consensus 39 q~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~----iii~~iv~iii~iIi 114 (119)
T 2kog_A 39 QAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM----IILGVICAIILIIII 114 (119)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhh
Confidence 4667888888888888888887777777777788888899999888877666532222232 234444444444444
Q ss_pred HH
Q 043681 96 LK 97 (101)
Q Consensus 96 i~ 97 (101)
+.
T Consensus 115 ~~ 116 (119)
T 2kog_A 115 VY 116 (119)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 18
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=87.10 E-value=2.4 Score=26.39 Aligned_cols=48 Identities=10% Similarity=0.171 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHH
Q 043681 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 64 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f 64 (101)
.-...+..+|+++++-|.+-|+.+-..-+.||.+..++..|.+.|..+
T Consensus 36 ~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L 83 (96)
T 1t3j_A 36 TTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQL 83 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345788999999999999999988888888887777776666655544
No 19
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=75.22 E-value=1.6 Score=25.82 Aligned_cols=49 Identities=14% Similarity=0.047 Sum_probs=25.9
Q ss_pred chhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 043681 46 KLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFIVF 94 (101)
Q Consensus 46 ~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv~~~i 94 (101)
+++.+.+...+.-..+..|-+.|+|=.|+-..+-.+..++.++++-++-
T Consensus 4 ~~~~~~e~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~imG~IG 52 (74)
T 1rh5_B 4 DFNQKIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIG 52 (74)
T ss_dssp --------CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666777777777777777777666555444444333
No 20
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=74.52 E-value=2.7 Score=25.27 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=22.4
Q ss_pred hhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 043681 50 VSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFIV 93 (101)
Q Consensus 50 L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv~~~ 93 (101)
+.+...++-..+..|-+.++|=.|+-..+-.+...+.++++-++
T Consensus 21 ~~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~I 64 (80)
T 2ww9_B 21 LVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGII 64 (80)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555556666666666554444433333
No 21
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=73.12 E-value=2.6 Score=20.35 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhcccchh
Q 043681 21 KLNDELYEVHQIMTRNVQEVLGVGEKLD 48 (101)
Q Consensus 21 ~~~~~v~ev~~im~~Ni~~il~Rge~Le 48 (101)
.++.++..+ ..|+|.+|+|=|+++
T Consensus 3 ~IkkELtQI----K~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 3 AIKKELTQI----KQKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHSS
T ss_pred HHHHHHHHH----HHHHHHHHHHHHhhh
Confidence 456666665 468888888877654
No 22
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=72.30 E-value=1.3 Score=25.79 Aligned_cols=48 Identities=15% Similarity=0.175 Sum_probs=29.8
Q ss_pred cchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 043681 45 EKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFI 92 (101)
Q Consensus 45 e~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv~~ 92 (101)
|.++.+.+...+.-.++..|-+.++|=.|+-..+-.|...+..+++-+
T Consensus 2 ~~~~~~~e~~~~f~k~~~r~lk~~~KPdr~Ef~~iak~~~iG~~i~G~ 49 (68)
T 2wwb_B 2 DQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGF 49 (68)
T ss_dssp CSSSSSSTTHHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666777777777777777777766655444333333
No 23
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=72.12 E-value=12 Score=21.62 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=37.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhH
Q 043681 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTS 59 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~ 59 (101)
.+.+.++...+.|+.+++.+=-..+.+.|+-++.++...+.-..
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 52 (77)
T 1jth_B 9 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 52 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999988877665553
No 24
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=70.91 E-value=11 Score=20.90 Aligned_cols=53 Identities=13% Similarity=0.070 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHH
Q 043681 24 DELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQAL 76 (101)
Q Consensus 24 ~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~ 76 (101)
..+..++.-+.+-.+-+.++-+++-.=.++-+.|.+.|......|...++.+-
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~ 56 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAA 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777766667777777788888888877777663
No 25
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=68.44 E-value=14 Score=20.90 Aligned_cols=49 Identities=8% Similarity=0.095 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHH
Q 043681 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYA 65 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~ 65 (101)
..++.+.+.+.+-.+-+.+.-+++=.=.++-++|.+.|+..+..|....
T Consensus 11 ~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~ 59 (63)
T 1urq_A 11 GAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMM 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555443
No 26
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=66.96 E-value=19 Score=21.91 Aligned_cols=55 Identities=15% Similarity=0.077 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Q 043681 23 NDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALI 77 (101)
Q Consensus 23 ~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w 77 (101)
...+..++.-+.+-.+-+.++-+++-+=.++-+.|.+.|......|...++.+--
T Consensus 29 ~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~k 83 (96)
T 1sfc_A 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAK 83 (96)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888888888888888888899999999999999888743
No 27
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=66.46 E-value=14 Score=20.38 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHH
Q 043681 25 ELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQAL 76 (101)
Q Consensus 25 ~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~ 76 (101)
.+..++.-+.+-.+-+.++-+++-.=.++-+.|.+.|......|...++.+-
T Consensus 3 ~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~ 54 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGAN 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666677777777777777776653
No 28
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=66.44 E-value=15 Score=20.65 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=38.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhH
Q 043681 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTS 59 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~ 59 (101)
.+.+.++...+.++.+++.+=-..+.+.|+.++.++...+.-..
T Consensus 11 ~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 54 (68)
T 1n7s_B 11 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 54 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999887775554
No 29
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=63.14 E-value=18 Score=20.40 Aligned_cols=45 Identities=16% Similarity=0.261 Sum_probs=38.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHh
Q 043681 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~ 60 (101)
.+.+.++...+.++.+++.+=-..+.+.|+-++.++...+.-...
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 53 (69)
T 3b5n_B 9 HQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLD 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999998887765543
No 30
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=62.68 E-value=19 Score=20.42 Aligned_cols=44 Identities=16% Similarity=0.287 Sum_probs=38.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhH
Q 043681 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTS 59 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~ 59 (101)
.+.+.++...+.|+.+++.+=-.-+-+.|+-|+.++...+.-..
T Consensus 5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 48 (71)
T 2nps_B 5 ETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEV 48 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 46789999999999999999888889999999999888766554
No 31
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=60.58 E-value=14 Score=19.84 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=27.5
Q ss_pred CCcHHHhHHHHHHHHHHHHHHHHHHhHHHHHhcccch
Q 043681 11 QDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKL 47 (101)
Q Consensus 11 ~d~~~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~L 47 (101)
.||+..+.+-+.|..+.+.-+-+.+.++.+-.|-+.|
T Consensus 6 edpC~CEslv~FQ~~v~~~l~~Lt~kL~~vt~rle~l 42 (47)
T 1aq5_A 6 EDPCECKSIVKFQTKVEELINTLQQKLEAVAKRIEAL 42 (47)
T ss_dssp SCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788889999999998888777777766555554444
No 32
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=59.84 E-value=19 Score=19.49 Aligned_cols=40 Identities=10% Similarity=0.157 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHh
Q 043681 21 KLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60 (101)
Q Consensus 21 ~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~ 60 (101)
....-+.|+.++-.+.+..+-+.||+|+...+..++..+.
T Consensus 4 ~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~ 43 (54)
T 1nhl_A 4 RILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKD 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhH
Confidence 3456678899999999999999999999888777665543
No 33
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=57.74 E-value=27 Score=20.75 Aligned_cols=58 Identities=9% Similarity=0.068 Sum_probs=24.3
Q ss_pred hcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHH---HHHhHHHHHHH-HHHHHHHHHHHHh
Q 043681 42 GVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQA---LIRKWAPVAIV-LGVVFIVFWLKTK 99 (101)
Q Consensus 42 ~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~---~w~~~k~~iii-~~vv~~~i~i~~~ 99 (101)
+.|++.+...+..+++.+....|.+.++++=++. =++-|...+-+ +..++++-++.|+
T Consensus 6 ~k~~~~~~~~d~~~~~~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfi 67 (80)
T 2ww9_B 6 EKGEEKKQSNNQVEKLVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYA 67 (80)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666677777788888888887776554 23334333333 3333444555554
No 34
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=56.86 E-value=29 Score=20.67 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=38.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHh
Q 043681 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60 (101)
Q Consensus 15 ~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~ 60 (101)
+.+.....-.-+.+...+....+..+.+.||+|+......+.+.+.
T Consensus 25 sl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~d 70 (83)
T 1l4a_C 25 SLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQD 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888999999999999999999999988888776654
No 35
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=55.57 E-value=25 Score=19.58 Aligned_cols=45 Identities=11% Similarity=0.257 Sum_probs=38.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHh
Q 043681 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~ 60 (101)
.+.+.++...+.++.+++.+=-.-+-+.|+.|+.++...+.-...
T Consensus 8 ~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 52 (65)
T 1gl2_B 8 ESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVH 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999998888899999999998877765543
No 36
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=55.55 E-value=14 Score=21.60 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhHHHHHhccc
Q 043681 23 NDELYEVHQIMTRNVQEVLGVGE 45 (101)
Q Consensus 23 ~~~v~ev~~im~~Ni~~il~Rge 45 (101)
.++++++++|+..|+.++=+|.-
T Consensus 6 ~~~~e~ir~IL~~NLykiRqr~~ 28 (70)
T 2ygg_A 6 KDKEEEIRKILRNNLQKTRQRLR 28 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 35799999999999999988853
No 37
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=54.51 E-value=9.7 Score=17.67 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhH
Q 043681 69 KDLNRQALIRKW 80 (101)
Q Consensus 69 ~kl~r~~~w~~~ 80 (101)
..++|+||..+.
T Consensus 5 Q~~rRr~wL~~l 16 (24)
T 3h3g_B 5 QDLRRRFFLHHL 16 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 578999999875
No 38
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=50.27 E-value=34 Score=19.62 Aligned_cols=58 Identities=9% Similarity=0.090 Sum_probs=46.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHH
Q 043681 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLN 72 (101)
Q Consensus 15 ~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~ 72 (101)
+.+.....-.-.++..++=...+..+-+.||+|+..+...+......+.=.+..+.|+
T Consensus 10 sl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk 67 (70)
T 3b5n_C 10 SVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELK 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666677778888888999999999999999999988888887776666666655
No 39
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=49.08 E-value=24 Score=17.60 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=11.8
Q ss_pred chhhhhhhhhhhhHhhHHHHHHHHHH
Q 043681 46 KLDQVSEMSSRLTSESRIYADKAKDL 71 (101)
Q Consensus 46 ~Le~L~~ks~~L~~~s~~f~~~a~kl 71 (101)
+.+.|++|.++|-..-........+|
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34445555555544444444444443
No 40
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=47.61 E-value=35 Score=18.98 Aligned_cols=53 Identities=9% Similarity=0.082 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHH
Q 043681 23 NDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQA 75 (101)
Q Consensus 23 ~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~ 75 (101)
...+..++.-+.+-.+-+.++-+++-.=.++-+.|.+.|......|...++.+
T Consensus 8 ~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A 60 (65)
T 1gl2_A 8 NDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTS 60 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777777777778888888888888887765
No 41
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=46.68 E-value=26 Score=20.43 Aligned_cols=40 Identities=13% Similarity=0.068 Sum_probs=30.7
Q ss_pred HHHHHHhCCcH-HHhHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 043681 4 QKTKKLYQDTR-TQRNIAKLNDELYEVHQIMTRNVQEVLGV 43 (101)
Q Consensus 4 ~~~~~~y~d~~-~~dki~~~~~~v~ev~~im~~Ni~~il~R 43 (101)
+...++|++|+ ..+...++++=++....-=+.||.+++++
T Consensus 24 ~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l~k 64 (77)
T 1ccd_A 24 EAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 64 (77)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34567786554 56888899988888888888888888764
No 42
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=45.11 E-value=44 Score=19.41 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=37.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhH
Q 043681 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTS 59 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~ 59 (101)
.+.+.++...+.|+.+++.+=-.-+-+.|+-++.++...+.-..
T Consensus 20 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 63 (83)
T 1sfc_B 20 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 46789999999999999999888888999999998877765554
No 43
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=44.98 E-value=22 Score=20.27 Aligned_cols=40 Identities=10% Similarity=0.128 Sum_probs=29.9
Q ss_pred HHHHHHhCCcH-HHhHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 043681 4 QKTKKLYQDTR-TQRNIAKLNDELYEVHQIMTRNVQEVLGV 43 (101)
Q Consensus 4 ~~~~~~y~d~~-~~dki~~~~~~v~ev~~im~~Ni~~il~R 43 (101)
+...++|++|+ ..+...++++=++....-=+.|+.+++++
T Consensus 22 ~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~k 62 (70)
T 1utg_A 22 ETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEK 62 (70)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34577886554 56888888888887777788888887764
No 44
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=44.75 E-value=30 Score=17.46 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=11.6
Q ss_pred hhhhhhhhhhhhHhhHHHHHHHHHHH
Q 043681 47 LDQVSEMSSRLTSESRIYADKAKDLN 72 (101)
Q Consensus 47 Le~L~~ks~~L~~~s~~f~~~a~kl~ 72 (101)
.+.|++|.++|-..-........+|+
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444555544444444444444433
No 45
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=42.91 E-value=9.9 Score=21.49 Aligned_cols=44 Identities=16% Similarity=0.026 Sum_probs=23.0
Q ss_pred hhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 043681 50 VSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFIV 93 (101)
Q Consensus 50 L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv~~~ 93 (101)
+.+...+.-..+..|-+.|+|=.|+-..+-.|...+.++++-++
T Consensus 4 ~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i~G~i 47 (61)
T 3mp7_B 4 LQERIRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLI 47 (61)
T ss_dssp ----CTTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555566666666666666666666555444444333
No 46
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=42.05 E-value=50 Score=19.13 Aligned_cols=52 Identities=10% Similarity=0.128 Sum_probs=34.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHH
Q 043681 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADK 67 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~ 67 (101)
.+.+..++..+.+.-+-+.+.-+++=+=.++-+.|...|......|....+.
T Consensus 21 q~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk 72 (80)
T 1l4a_A 21 QAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRK 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666666666667777777777777666443
No 47
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=41.80 E-value=33 Score=17.08 Aligned_cols=24 Identities=8% Similarity=0.093 Sum_probs=9.9
Q ss_pred hhhhhhhhhhhhHhhHHHHHHHHH
Q 043681 47 LDQVSEMSSRLTSESRIYADKAKD 70 (101)
Q Consensus 47 Le~L~~ks~~L~~~s~~f~~~a~k 70 (101)
.+.|++|.++|-..-........+
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~R 26 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH
Confidence 344444444444433333333333
No 48
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=41.73 E-value=33 Score=24.27 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhh
Q 043681 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLT 58 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~ 58 (101)
+.+.++...+.|+.+++.+=-.-+.+.|+-|+.++...+.-.
T Consensus 200 ~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~ 241 (267)
T 1dn1_B 200 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 241 (267)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 568888888999999888888888899999999988776544
No 49
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=40.80 E-value=39 Score=18.54 Aligned_cols=22 Identities=5% Similarity=0.324 Sum_probs=18.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHhH
Q 043681 16 QRNIAKLNDELYEVHQIMTRNV 37 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni 37 (101)
.+.++.++.+++.+.++..+|=
T Consensus 6 ~~sl~~l~~ql~sla~vvlQNR 27 (53)
T 1y4m_A 6 AKALTTMQEQIDSLAAVVLQNR 27 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999988883
No 50
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=40.38 E-value=51 Score=18.75 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=21.9
Q ss_pred HHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHHHHHHHH
Q 043681 28 EVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQA 75 (101)
Q Consensus 28 ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~ 75 (101)
.++.-+.+-.+-+.++-+++-+=.++-+.|.+.|......|...++.+
T Consensus 12 ~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a 59 (74)
T 2nps_A 12 HVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRS 59 (74)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444455555555555555444
No 51
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=39.52 E-value=53 Score=22.56 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=12.7
Q ss_pred chhhhhhhhhhhhHhhHHHHHH
Q 043681 46 KLDQVSEMSSRLTSESRIYADK 67 (101)
Q Consensus 46 ~Le~L~~ks~~L~~~s~~f~~~ 67 (101)
..+.+..+.++|+..+..+...
T Consensus 192 ~~~~i~~~~~~L~~~~~~i~~~ 213 (219)
T 4e81_A 192 DKAAIEAKMQELAQVSQKLMEI 213 (219)
T ss_dssp CHHHHHHHHHHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666555443
No 52
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=38.82 E-value=57 Score=18.94 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=39.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHh
Q 043681 14 RTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60 (101)
Q Consensus 14 ~~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~ 60 (101)
.+.+.+.....-+.|+.++-.+.+..+-+.||+|+...+...+..+.
T Consensus 20 ~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~ 66 (79)
T 1n7s_C 20 ESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQD 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhH
Confidence 34677888888899999999999999999999999888777766544
No 53
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=37.27 E-value=8.4 Score=24.20 Aligned_cols=17 Identities=6% Similarity=0.421 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHH
Q 043681 77 IRKWAPVAIVLGVVFIV 93 (101)
Q Consensus 77 w~~~k~~iii~~vv~~~ 93 (101)
++.+.+.++++++++++
T Consensus 102 ~~~~~~~~i~~~~~i~i 118 (130)
T 3fym_A 102 SKEPIQLLVIMGITVLI 118 (130)
T ss_dssp -----------------
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 34444444444444333
No 54
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=36.47 E-value=50 Score=18.25 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=18.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHhH
Q 043681 16 QRNIAKLNDELYEVHQIMTRNV 37 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni 37 (101)
.+.++.++.+++.+.++.-+|=
T Consensus 8 ~~si~~l~~ql~sla~vvlQNR 29 (55)
T 1mof_A 8 EKSISNLEKSLTSLSEVVLQNR 29 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999988888873
No 55
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=35.95 E-value=43 Score=16.68 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=5.2
Q ss_pred hhhhhhhhhhhHh
Q 043681 48 DQVSEMSSRLTSE 60 (101)
Q Consensus 48 e~L~~ks~~L~~~ 60 (101)
+.|++|-++|-..
T Consensus 4 nQLEdKvEeLl~~ 16 (34)
T 2bni_A 4 KQIEDKLEEILSK 16 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHc
Confidence 3344444444333
No 56
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=35.73 E-value=57 Score=23.16 Aligned_cols=39 Identities=10% Similarity=0.191 Sum_probs=28.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhh
Q 043681 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMS 54 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks 54 (101)
.+.++.+...++++.......-..+-...++|.+|.+.+
T Consensus 12 EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~i 50 (233)
T 2yko_A 12 EERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYV 50 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357788888888887777766666667777777777664
No 57
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=35.40 E-value=76 Score=19.36 Aligned_cols=9 Identities=11% Similarity=0.224 Sum_probs=4.4
Q ss_pred HHHHHHhHH
Q 043681 30 HQIMTRNVQ 38 (101)
Q Consensus 30 ~~im~~Ni~ 38 (101)
++-|.++|+
T Consensus 47 Qge~Id~Ie 55 (109)
T 3hd7_B 47 QGEMIDRIE 55 (109)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 444555554
No 58
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=34.43 E-value=48 Score=16.75 Aligned_cols=20 Identities=25% Similarity=-0.006 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 043681 80 WAPVAIVLGVVFIVFWLKTK 99 (101)
Q Consensus 80 ~k~~iii~~vv~~~i~i~~~ 99 (101)
+.+..+.+.+++++++-..|
T Consensus 8 malt~i~gl~vif~~lg~tf 27 (40)
T 2l9u_A 8 MALTVIAGLVVIFMMLGGTF 27 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcee
Confidence 45666777777777766555
No 59
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=31.45 E-value=86 Score=18.79 Aligned_cols=44 Identities=16% Similarity=0.125 Sum_probs=27.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHH
Q 043681 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 64 (101)
Q Consensus 15 ~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f 64 (101)
..+...++...++++++-+..|= ....+.+..+.++|+..+..+
T Consensus 35 ~~eek~~i~~~i~e~~~wL~~~~------~a~~e~i~~k~~eL~~~~~~i 78 (113)
T 3lof_A 35 SEADKKKVLDKCQEVISWLDANT------LAEKDEFEHKRKELEQVCNPI 78 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCT------TCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCC------cCCHHHHHHHHHHHHHHHHHH
Confidence 34555677777777777665541 123567777777777666554
No 60
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=30.83 E-value=32 Score=20.76 Aligned_cols=40 Identities=13% Similarity=0.068 Sum_probs=29.6
Q ss_pred HHHHHHhCCcH-HHhHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 043681 4 QKTKKLYQDTR-TQRNIAKLNDELYEVHQIMTRNVQEVLGV 43 (101)
Q Consensus 4 ~~~~~~y~d~~-~~dki~~~~~~v~ev~~im~~Ni~~il~R 43 (101)
++..++|+.|+ ..+...++++=+++...-=+.|+.++++.
T Consensus 43 ~~~L~~y~~~~~a~~A~~~lK~Cvd~ls~e~r~~i~~ll~~ 83 (96)
T 1utr_A 43 EAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 83 (96)
T ss_dssp HHHHGGGCCCHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45567887555 45788888888888777778888877754
No 61
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=30.67 E-value=85 Score=18.92 Aligned_cols=41 Identities=7% Similarity=0.117 Sum_probs=34.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhh
Q 043681 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSS 55 (101)
Q Consensus 15 ~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~ 55 (101)
...++..+-..+...+--|..++++-.++-+.|-++.+|-.
T Consensus 31 ~d~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls 71 (91)
T 2pjw_V 31 EDSKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKIS 71 (91)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999988887776666654
No 62
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=30.50 E-value=39 Score=19.12 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=7.5
Q ss_pred HhHHHHHHHHHHHH
Q 043681 16 QRNIAKLNDELYEV 29 (101)
Q Consensus 16 ~dki~~~~~~v~ev 29 (101)
.++|.++..++..+
T Consensus 11 gekI~~L~~~v~~~ 24 (64)
T 3t97_C 11 GEKITSLHREVEKV 24 (64)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555554
No 63
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=28.35 E-value=31 Score=24.92 Aligned_cols=31 Identities=3% Similarity=0.086 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 043681 69 KDLNRQALIRKWAPVAIVLGVVFIVFWLKTK 99 (101)
Q Consensus 69 ~kl~r~~~w~~~k~~iii~~vv~~~i~i~~~ 99 (101)
-+--++.|+++.-.+++++++++++++..++
T Consensus 25 ~~~~kk~~~~~~~~~~~~~~l~~~~~~~~~~ 55 (263)
T 3vmt_A 25 GKPPKKKKSKRILLKILLTILIIIALFIGIM 55 (263)
T ss_dssp ----------CCTTHHHHHHHHHHHHHHHHH
T ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667665566665555555544443
No 64
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=28.04 E-value=46 Score=15.92 Aligned_cols=14 Identities=21% Similarity=0.522 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 043681 85 IVLGVVFIVFWLKT 98 (101)
Q Consensus 85 ii~~vv~~~i~i~~ 98 (101)
++++++.++-++.|
T Consensus 8 viaglvalltflaf 21 (32)
T 2lx0_A 8 VIAGLVALLTFLAF 21 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555554444433
No 65
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=27.20 E-value=50 Score=15.46 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 043681 17 RNIAKLNDELYEVHQIMTR 35 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~ 35 (101)
.-+.+++..+.++++-|..
T Consensus 5 ei~~kiK~kl~~akdK~k~ 23 (26)
T 2kfe_A 5 EFMSNLKEKLSGVKEKMKN 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 4567788888888877643
No 66
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=27.14 E-value=1e+02 Score=18.30 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=27.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHH
Q 043681 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYA 65 (101)
Q Consensus 15 ~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~ 65 (101)
+.+...+++..+++++..+.+|-+ ...+.+..+.+.|...+..|.
T Consensus 30 ~~~ek~~i~~~i~~l~~~L~~~~~------ad~~~i~~~~~~L~~~~~~i~ 74 (113)
T 1ud0_A 30 NDEDKQKILDKCNEIISWLDKNQT------AEKEEFEHQQKELEKVCNPII 74 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCc------cCHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777776643210 134667777777777666664
No 67
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=27.00 E-value=1.1e+02 Score=18.60 Aligned_cols=44 Identities=11% Similarity=0.149 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHH
Q 043681 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYAD 66 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~ 66 (101)
+...+++..++++++.+..| .....+.+..+.+.|...+..|..
T Consensus 46 eek~~I~~~i~el~~~L~~~------~~ad~e~ik~k~~eL~~~~~~i~~ 89 (120)
T 2p32_A 46 EDKKKIEDKCDEILKWLDSN------QTAEKEEFEHQQKDLEGLANPIIS 89 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcC------CcCCHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666665544321 011567788888888877776643
No 68
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=26.77 E-value=1e+02 Score=18.02 Aligned_cols=43 Identities=9% Similarity=0.177 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhH
Q 043681 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTS 59 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~ 59 (101)
+.+..+..-|...+++-.+-=+++=+..+-|+.+.++++....
T Consensus 29 ~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~ 71 (87)
T 1sfc_D 29 ENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKT 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4556666666666655555555555556666666666665444
No 69
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=26.01 E-value=71 Score=16.06 Aligned_cols=11 Identities=18% Similarity=0.220 Sum_probs=4.2
Q ss_pred hhhhhhhhhhH
Q 043681 49 QVSEMSSRLTS 59 (101)
Q Consensus 49 ~L~~ks~~L~~ 59 (101)
.|+++.++|-.
T Consensus 5 QLE~kVEeLl~ 15 (36)
T 1kd8_A 5 QLEAEVEEIES 15 (36)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 70
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=25.88 E-value=1.5e+02 Score=24.48 Aligned_cols=40 Identities=20% Similarity=0.137 Sum_probs=21.3
Q ss_pred hhhhhhhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 043681 52 EMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFIVFW 95 (101)
Q Consensus 52 ~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~~iii~~vv~~~i~ 95 (101)
+-+++|++-|...+..|.- ..-|.||...+++.++.++++
T Consensus 39 ~G~~~M~eIa~~I~eGA~a----fL~rqyk~i~~~~vv~~~ll~ 78 (735)
T 4av3_A 39 EGTERMKEISSYIRSGADS----FLAHETKAIFKVAIVIAILLM 78 (735)
T ss_dssp C-CHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666543 233456766555544444433
No 71
>1zkr_A Major allergen I polypeptide, fused chain 1, CHAI; CAT allergen, uteroglobin, secretoglobin; 1.64A {Felis catus} SCOP: a.101.1.1 a.101.1.1 PDB: 2ejn_A
Probab=25.61 E-value=1.1e+02 Score=20.30 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=28.2
Q ss_pred HHHHHHhCCcH-HHhHHHHHHHHHH-HHHHHHHHhHHHHHhc
Q 043681 4 QKTKKLYQDTR-TQRNIAKLNDELY-EVHQIMTRNVQEVLGV 43 (101)
Q Consensus 4 ~~~~~~y~d~~-~~dki~~~~~~v~-ev~~im~~Ni~~il~R 43 (101)
++..++|++|+ ..+...++++=++ ....-=+.|+.+++++
T Consensus 23 k~~LkkYn~~pealeA~~eLKqCvD~~LS~Etr~nI~klLek 64 (153)
T 1zkr_A 23 VEQVAQYKALPVVLENARILKNCVDAKMTEEDKENALSLLDK 64 (153)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 34567786554 5688888888888 6666667777777765
No 72
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=25.59 E-value=39 Score=18.25 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=12.9
Q ss_pred HhHHHHHHHHHHHHHH
Q 043681 16 QRNIAKLNDELYEVHQ 31 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~ 31 (101)
.+++++++.++++|+.
T Consensus 31 ~ERl~ql~~~Leel~~ 46 (49)
T 2xus_A 31 RERLSQLRLRLEEVGA 46 (49)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHc
Confidence 5889999999998853
No 73
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=25.17 E-value=1.7e+02 Score=20.24 Aligned_cols=41 Identities=15% Similarity=0.187 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhh
Q 043681 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRL 57 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L 57 (101)
..+.++.+.++++++.=.+.++..++....+...++.+..|
T Consensus 84 ~~~~~i~~~ln~~r~~~i~~lk~~Ie~~k~~q~~~~~~~~L 124 (214)
T 2cly_A 84 KLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYL 124 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888888888888888888777
No 74
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=24.99 E-value=1e+02 Score=19.60 Aligned_cols=34 Identities=6% Similarity=0.164 Sum_probs=25.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhh
Q 043681 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQV 50 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L 50 (101)
.|.++++|..|+..-..|-..|.-+ +|...-..+
T Consensus 2 aDrlTQLQd~ldqla~~f~nsig~L-q~~a~p~~~ 35 (132)
T 1ykh_B 2 TDRMTQLQICLDQMTEQFCATLNYI-DKNHGFERL 35 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-HHSSCCC--
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH-hcCCCcccC
Confidence 3889999999999999999988754 444443333
No 75
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=23.53 E-value=81 Score=15.81 Aligned_cols=16 Identities=38% Similarity=0.227 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 043681 84 AIVLGVVFIVFWLKTK 99 (101)
Q Consensus 84 iii~~vv~~~i~i~~~ 99 (101)
.+++.++++++.++.|
T Consensus 7 ~ivalivalIiaIVVW 22 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVW 22 (36)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 76
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=23.38 E-value=95 Score=20.83 Aligned_cols=43 Identities=21% Similarity=0.316 Sum_probs=34.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhh
Q 043681 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLT 58 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~ 58 (101)
.+.+..+...+.++.+++.+=-..+-+.|+.++.+....+...
T Consensus 211 ~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~ 253 (279)
T 3c98_B 211 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 253 (279)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888899988888877778888888888877665544
No 77
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=21.90 E-value=91 Score=18.19 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhHHHHHhcccchh
Q 043681 23 NDELYEVHQIMTRNVQEVLGVGEKLD 48 (101)
Q Consensus 23 ~~~v~ev~~im~~Ni~~il~Rge~Le 48 (101)
+.+++++-+.+.+-|.+.|..|+++.
T Consensus 21 k~~~~~~v~~~~~~i~~~L~~g~~V~ 46 (93)
T 3rhi_A 21 QKEATVVVQTVVESITNTLAAGEKVQ 46 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 56678888888888888999998765
No 78
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.43 E-value=2.2e+02 Score=22.73 Aligned_cols=13 Identities=38% Similarity=0.675 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHH
Q 043681 17 RNIAKLNDELYEV 29 (101)
Q Consensus 17 dki~~~~~~v~ev 29 (101)
..|.+|+++|+++
T Consensus 64 krINELKnqLEdl 76 (562)
T 3ghg_A 64 NRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 79
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=21.17 E-value=58 Score=23.59 Aligned_cols=13 Identities=38% Similarity=0.452 Sum_probs=4.9
Q ss_pred hhhhhhhhhhhhH
Q 043681 47 LDQVSEMSSRLTS 59 (101)
Q Consensus 47 Le~L~~ks~~L~~ 59 (101)
.+.|.+.++.|..
T Consensus 285 ~~~l~~~a~~L~~ 297 (341)
T 3zx6_A 285 AAALEEQASRLTE 297 (341)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 80
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=21.11 E-value=90 Score=15.47 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=10.9
Q ss_pred hhhhhhhhhhhhHhhHHHHHHHHHH
Q 043681 47 LDQVSEMSSRLTSESRIYADKAKDL 71 (101)
Q Consensus 47 Le~L~~ks~~L~~~s~~f~~~a~kl 71 (101)
.+.|+++.++|-..-........+|
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL 27 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARL 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444455555444444444333333
No 81
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=20.98 E-value=88 Score=15.32 Aligned_cols=13 Identities=23% Similarity=0.498 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 043681 83 VAIVLGVVFIVFW 95 (101)
Q Consensus 83 ~iii~~vv~~~i~ 95 (101)
..++++.+.++.+
T Consensus 7 t~ll~~tlgiiFF 19 (32)
T 3arc_T 7 VFIFACIIALFFF 19 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334333333333
No 82
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=20.46 E-value=85 Score=14.91 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=18.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhH
Q 043681 15 TQRNIAKLNDELYEVHQIMTRNV 37 (101)
Q Consensus 15 ~~dki~~~~~~v~ev~~im~~Ni 37 (101)
+.+++.-++..++|-+.|..++-
T Consensus 4 ~~sKm~lLKKKIEEQr~i~~~~~ 26 (29)
T 3lcn_C 4 TASKMKLLKKKIEEQREILQKTH 26 (29)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhc
Confidence 45788889999999998887764
Done!