Query 043681
Match_columns 101
No_of_seqs 105 out of 767
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 12:24:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043681.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043681hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtt1 f.23.34.1 (T:1-30) Pho 79.6 1.1 7.9E-05 20.4 2.9 20 80-99 4-23 (30)
2 d1u00a1 a.8.4.1 (A:504-615) Ch 65.4 7.6 0.00056 22.5 5.2 50 7-65 44-93 (112)
3 d1dkza1 a.8.4.1 (A:507-603) Dn 65.4 9.1 0.00066 21.5 5.7 43 17-68 54-96 (97)
4 d3cx5d2 f.23.11.1 (D:261-307) 59.1 4.6 0.00033 20.5 2.8 23 79-101 10-32 (47)
5 d1ppjd2 f.23.11.1 (D:196-241) 52.3 6.9 0.0005 19.6 2.8 23 79-101 10-32 (46)
6 d1my6a1 a.2.11.1 (A:1-88) Fe s 46.4 13 0.00098 20.6 3.8 50 33-82 35-88 (88)
7 d3bi1a1 a.48.2.1 (A:594-750) G 41.5 32 0.0023 20.5 5.6 50 20-69 9-58 (157)
8 d1fx0b1 a.69.1.1 (B:378-485) F 36.4 19 0.0014 21.1 3.5 39 35-73 12-52 (108)
9 d2o97b1 a.55.1.1 (B:1-90) HU p 35.8 17 0.0013 20.0 3.1 28 22-49 17-44 (90)
10 d1idsa1 a.2.11.1 (A:2-85) Fe s 35.0 27 0.002 19.1 3.9 18 64-81 66-83 (84)
11 d1p71a_ a.55.1.1 (A:) HU prote 34.8 18 0.0013 20.0 3.1 27 22-48 17-43 (94)
12 d1utga_ a.101.1.1 (A:) Uterogl 34.0 19 0.0014 19.6 2.9 38 5-42 23-61 (70)
13 d1mula_ a.55.1.1 (A:) HU prote 33.9 19 0.0014 19.8 3.1 28 22-49 17-44 (90)
14 d2axtl1 f.23.31.1 (L:1-37) Pho 32.7 24 0.0018 16.6 3.1 16 85-100 21-36 (37)
15 d1ccda_ a.101.1.1 (A:) Clara c 31.8 27 0.002 19.2 3.4 38 6-43 26-64 (77)
16 d1kkca1 a.2.11.1 (A:14-97) Mn 31.4 35 0.0026 18.7 4.0 16 66-81 68-83 (84)
17 d1huua_ a.55.1.1 (A:) HU prote 29.9 25 0.0018 19.3 3.1 28 22-49 17-44 (90)
18 d1owfb_ a.55.1.1 (B:) Integrat 29.7 25 0.0018 19.5 3.1 26 23-48 19-44 (94)
19 d1ix9a1 a.2.11.1 (A:1-90) Mn s 28.5 45 0.0033 18.4 4.4 37 45-81 51-89 (90)
20 d1skye1 a.69.1.1 (E:357-470) F 28.5 54 0.0039 19.2 5.0 40 34-73 11-52 (114)
21 d1ykhb1 a.252.1.1 (B:2-130) RN 27.9 39 0.0029 20.0 4.0 30 17-47 2-31 (129)
22 d1b8za_ a.55.1.1 (A:) HU prote 27.7 29 0.0021 18.9 3.1 27 23-49 18-44 (90)
23 d2jdid1 a.69.1.1 (D:358-475) F 26.8 49 0.0036 19.5 4.2 39 35-73 15-55 (118)
24 d1owfa_ a.55.1.1 (A:) Integrat 24.9 34 0.0025 18.8 3.1 28 22-49 18-45 (96)
25 d1s35a1 a.7.1.1 (A:1063-1168) 24.3 50 0.0037 17.5 6.1 14 34-47 52-65 (106)
26 d1k9xa_ d.92.1.5 (A:) Thermost 23.4 1E+02 0.0075 22.1 6.3 63 9-71 58-123 (497)
27 d1u5pa1 a.7.1.1 (A:1662-1771) 21.6 59 0.0043 17.3 6.0 47 2-48 17-69 (110)
28 d1q08a_ a.6.1.3 (A:) Transcrip 21.0 65 0.0047 17.5 4.4 12 3-14 22-33 (94)
29 d1wfda_ a.7.14.1 (A:) Hypothet 20.7 45 0.0033 18.3 3.1 28 28-55 56-83 (93)
30 d2p4ka1 a.2.11.1 (A:1-83) Mn s 20.3 65 0.0048 17.3 4.2 18 64-81 65-82 (83)
31 d1oede_ f.36.1.1 (E:) Acetylch 20.1 33 0.0024 21.7 2.7 13 55-67 200-212 (260)
32 d1b3qa1 a.30.2.1 (A:293-354) H 20.1 57 0.0042 16.6 6.1 49 16-66 8-56 (62)
No 1
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=79.65 E-value=1.1 Score=20.42 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 043681 80 WAPVAIVLGVVFIVFWLKTK 99 (101)
Q Consensus 80 ~k~~iii~~vv~~~i~i~~~ 99 (101)
..+.+|++|++.++.+.+||
T Consensus 4 i~yv~ifac~i~lfffaiff 23 (30)
T d2axtt1 4 ITYVFIFACIIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred eehHHHHHHHHHHHHHHHHh
Confidence 34566677777666666555
No 2
>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=65.42 E-value=7.6 Score=22.50 Aligned_cols=50 Identities=8% Similarity=0.185 Sum_probs=32.9
Q ss_pred HHHhCCcHHHhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHH
Q 043681 7 KKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYA 65 (101)
Q Consensus 7 ~~~y~d~~~~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~ 65 (101)
++.+.+.-+.+....++..+++++..+ + ++..+.+....+.|...+..|.
T Consensus 44 L~e~~~~L~~~e~~~i~~~i~~l~~~l--------~-~~d~~~I~~~~~~L~~~~~~~a 93 (112)
T d1u00a1 44 LAADAALLSAAERQVIDDAAAHLSEVA--------Q-GDDVDAIEQAIKNVDKQTQDFA 93 (112)
T ss_dssp HHHHGGGSCHHHHHHHHHHHHHHHHHT--------T-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHhhCCHHHHHHHHHHHHHHHHHH--------H-CCCHHHHHHHHHHHHHHHHHHH
Confidence 344443334455666666666665444 3 3457899999999999888884
No 3
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Probab=65.35 E-value=9.1 Score=21.51 Aligned_cols=43 Identities=14% Similarity=0.199 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHH
Q 043681 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKA 68 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a 68 (101)
+....++..+++++..+ + ++..+.+....+.|...+..|...|
T Consensus 54 ~~k~~i~~~i~~l~~~l--------~-~~d~~~i~~~~~~L~~~~~~l~e~a 96 (97)
T d1dkza1 54 DDKTAIESALTALETAL--------K-GEDKAAIEAKMQELAQVSQKLMEIA 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHH--------T-SSCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------h-cCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555555544443 3 3457888888888888888776544
No 4
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=59.07 E-value=4.6 Score=20.52 Aligned_cols=23 Identities=22% Similarity=0.554 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhC
Q 043681 79 KWAPVAIVLGVVFIVFWLKTKLW 101 (101)
Q Consensus 79 ~~k~~iii~~vv~~~i~i~~~~~ 101 (101)
-+|..+++.++.++.+++..|-|
T Consensus 10 g~K~~~i~s~l~~~~~y~KR~kW 32 (47)
T d3cx5d2 10 GLKTVIILSSLYLLSIWVKKFKW 32 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 45777777778888888887755
No 5
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=52.34 E-value=6.9 Score=19.64 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhC
Q 043681 79 KWAPVAIVLGVVFIVFWLKTKLW 101 (101)
Q Consensus 79 ~~k~~iii~~vv~~~i~i~~~~~ 101 (101)
-+|..++++++.+++.+...+-|
T Consensus 10 G~Kv~~~l~~l~~l~yy~KR~~W 32 (46)
T d1ppjd2 10 GLKMLLMMGLLLPLVYAMKRHKW 32 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566666666666666666654
No 6
>d1my6a1 a.2.11.1 (A:1-88) Fe superoxide dismutase (FeSOD) {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=46.43 E-value=13 Score=20.61 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=25.7
Q ss_pred HHHhHHHHHhc----ccchhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHhHHH
Q 043681 33 MTRNVQEVLGV----GEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAP 82 (101)
Q Consensus 33 m~~Ni~~il~R----ge~Le~L~~ks~~L~~~s~~f~~~a~kl~r~~~w~~~k~ 82 (101)
-.+|++++++. +..++++...+..-...+..|...+.-.+-...|+++++
T Consensus 35 YV~~lN~~~~~~~~~~~~l~~ii~~~~~~~~~~~v~nnagg~~NH~~fW~~m~P 88 (88)
T d1my6a1 35 YVDNLNKLTQDTELADKSLEDVIRTTYGDAAKVGIFNNAAQVWNHTFFWNSLKP 88 (88)
T ss_dssp HHHHHHHHHTTSGGGGSCHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHTBCT
T ss_pred HHHHHHHHhhhhHHHhcCHHHHHHHHHHhHHHHHHHhcchhHhhHHHHHhccCc
Confidence 34455555432 334445554443333334445555555667778887753
No 7
>d3bi1a1 a.48.2.1 (A:594-750) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.50 E-value=32 Score=20.51 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHHHHH
Q 043681 20 AKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAK 69 (101)
Q Consensus 20 ~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~~a~ 69 (101)
..++.-+++++....+.-+.+-..+-.++.|.+-...+...|..|.....
T Consensus 9 ~~L~~~~~~l~~~~~~~~~~l~~~~~~~~~L~~a~~~f~~aa~~~~~~~~ 58 (157)
T d3bi1a1 9 VVLRKYADKIYSISMKHPQEMKTYSVSFDSLFSAVKNFTEIASKFSERLQ 58 (157)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666676666555555556666777787777777777777766543
No 8
>d1fx0b1 a.69.1.1 (B:378-485) F1 ATP synthase beta subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=36.37 E-value=19 Score=21.13 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=29.0
Q ss_pred HhHHHHHhcccchhhhhhhh--hhhhHhhHHHHHHHHHHHH
Q 043681 35 RNVQEVLGVGEKLDQVSEMS--SRLTSESRIYADKAKDLNR 73 (101)
Q Consensus 35 ~Ni~~il~Rge~Le~L~~ks--~~L~~~s~~f~~~a~kl~r 73 (101)
.-+.++|+|-..|+++..-- ++|+..-+....+|+++.|
T Consensus 12 ~~v~~iLqrYkeLqdIIailG~dELSeeDk~~v~RArklq~ 52 (108)
T d1fx0b1 12 QRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIER 52 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSTTSCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcChhhhHHHHHHHHHHH
Confidence 34566677777777766544 8899999999999999864
No 9
>d2o97b1 a.55.1.1 (B:1-90) HU protein {Escherichia coli, beta-isoform [TaxId: 562]}
Probab=35.80 E-value=17 Score=19.97 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHhcccchhh
Q 043681 22 LNDELYEVHQIMTRNVQEVLGVGEKLDQ 49 (101)
Q Consensus 22 ~~~~v~ev~~im~~Ni~~il~Rge~Le~ 49 (101)
.+.+++++-+.+.+.|.+.|.+|++++.
T Consensus 17 ~~~~~~~~v~~~~~~i~~~L~~~~~v~l 44 (90)
T d2o97b1 17 SKAAAGRALDAIIASVTESLKEGDDVAL 44 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeEec
Confidence 4667888888888999999999987653
No 10
>d1idsa1 a.2.11.1 (A:2-85) Fe superoxide dismutase (FeSOD) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=34.95 E-value=27 Score=19.14 Aligned_cols=18 Identities=11% Similarity=0.078 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 043681 64 YADKAKDLNRQALIRKWA 81 (101)
Q Consensus 64 f~~~a~kl~r~~~w~~~k 81 (101)
+...+.-.+-...|+.++
T Consensus 66 ~~N~gg~~NH~~fW~~m~ 83 (84)
T d1idsa1 66 AFNLAGHVNHTIWWKNLS 83 (84)
T ss_dssp HHHHHHHHHHHHHHHHBC
T ss_pred cccchhHHHHHHHhcccC
Confidence 334455566667777654
No 11
>d1p71a_ a.55.1.1 (A:) HU protein {Anabaena sp. [TaxId: 1167]}
Probab=34.80 E-value=18 Score=20.01 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHhcccchh
Q 043681 22 LNDELYEVHQIMTRNVQEVLGVGEKLD 48 (101)
Q Consensus 22 ~~~~v~ev~~im~~Ni~~il~Rge~Le 48 (101)
-+.+++.+-+.+.+.|.+.|.+|++++
T Consensus 17 s~~~~~~~v~~~~~~i~~~L~~~~~V~ 43 (94)
T d1p71a_ 17 TKKQADAVLTAALETIIEAVSSGDKVT 43 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence 466788888899999999999998765
No 12
>d1utga_ a.101.1.1 (A:) Uteroglobin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=33.97 E-value=19 Score=19.57 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=22.9
Q ss_pred HHHHHhCCcH-HHhHHHHHHHHHHHHHHHHHHhHHHHHh
Q 043681 5 KTKKLYQDTR-TQRNIAKLNDELYEVHQIMTRNVQEVLG 42 (101)
Q Consensus 5 ~~~~~y~d~~-~~dki~~~~~~v~ev~~im~~Ni~~il~ 42 (101)
+.++.|++.+ -.+...++++=||....-=++|+-++++
T Consensus 23 ~~vk~y~~~~~~le~~~~lK~cvDtLt~edK~~i~~lie 61 (70)
T d1utga_ 23 TSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTE 61 (70)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3467785444 4466677777776555555666655554
No 13
>d1mula_ a.55.1.1 (A:) HU protein {Escherichia coli [TaxId: 562]}
Probab=33.91 E-value=19 Score=19.78 Aligned_cols=28 Identities=11% Similarity=0.111 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHhcccchhh
Q 043681 22 LNDELYEVHQIMTRNVQEVLGVGEKLDQ 49 (101)
Q Consensus 22 ~~~~v~ev~~im~~Ni~~il~Rge~Le~ 49 (101)
.+.+++++-+.+.+.|.+.|.+|++++.
T Consensus 17 tk~~~~~~v~~~~~~i~~~L~~~~~v~l 44 (90)
T d1mula_ 17 SKTQAKAALESTLAAITESLKEGDAVQL 44 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcEe
Confidence 3667888888889999999999988754
No 14
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=32.69 E-value=24 Score=16.55 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhh
Q 043681 85 IVLGVVFIVFWLKTKL 100 (101)
Q Consensus 85 ii~~vv~~~i~i~~~~ 100 (101)
++..+|+.+++-.|||
T Consensus 21 lLlifvl~vLFssYfF 36 (37)
T d2axtl1 21 LLLILVLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3344445556666664
No 15
>d1ccda_ a.101.1.1 (A:) Clara cell 17kDa protein {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=31.76 E-value=27 Score=19.20 Aligned_cols=38 Identities=13% Similarity=0.067 Sum_probs=25.9
Q ss_pred HHHHhCC-cHHHhHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 043681 6 TKKLYQD-TRTQRNIAKLNDELYEVHQIMTRNVQEVLGV 43 (101)
Q Consensus 6 ~~~~y~d-~~~~dki~~~~~~v~ev~~im~~Ni~~il~R 43 (101)
.++.|++ |.-.+...++++=||....-=+.|+-+++++
T Consensus 26 ~vk~y~~d~~~lea~~~LK~cVDtLteedK~~i~~liek 64 (77)
T d1ccda_ 26 ALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 64 (77)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHccCCCHHHHHHHHHHHHHHhcCCHhhHHHHHHHHHH
Confidence 4667854 4445777888888887666667777766653
No 16
>d1kkca1 a.2.11.1 (A:14-97) Mn superoxide dismutase (MnSOD) {Aspergillus fumigatus [TaxId: 5085]}
Probab=31.40 E-value=35 Score=18.65 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhHH
Q 043681 66 DKAKDLNRQALIRKWA 81 (101)
Q Consensus 66 ~~a~kl~r~~~w~~~k 81 (101)
..|.-.+-...|+.++
T Consensus 68 N~gg~~NH~~fW~~m~ 83 (84)
T d1kkca1 68 NGGGHINHSLFWKNLA 83 (84)
T ss_dssp HHHHHHHHHHHHHTBC
T ss_pred hcchhhhHHHHhcccC
Confidence 4455556666776554
No 17
>d1huua_ a.55.1.1 (A:) HU protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=29.90 E-value=25 Score=19.26 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHhcccchhh
Q 043681 22 LNDELYEVHQIMTRNVQEVLGVGEKLDQ 49 (101)
Q Consensus 22 ~~~~v~ev~~im~~Ni~~il~Rge~Le~ 49 (101)
-+.+++++-+.+.+.|.+.|.+|++++.
T Consensus 17 ~~~~~~~~~~~~~~~i~~~L~~~~~v~i 44 (90)
T d1huua_ 17 SKKDATKAVDAVFDSITEALRKGDKVQL 44 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCceEe
Confidence 3566788888888888888999987653
No 18
>d1owfb_ a.55.1.1 (B:) Integration host factor beta subunit (IHFB) {Escherichia coli [TaxId: 562]}
Probab=29.66 E-value=25 Score=19.48 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhHHHHHhcccchh
Q 043681 23 NDELYEVHQIMTRNVQEVLGVGEKLD 48 (101)
Q Consensus 23 ~~~v~ev~~im~~Ni~~il~Rge~Le 48 (101)
+.+++++-+.+.+.|.+.|.+|++++
T Consensus 19 ~~~~~~~v~~~~~~i~~~L~~~~~V~ 44 (94)
T d1owfb_ 19 AKTVEDAVKEMLEHMASTLAQGERIA 44 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 34577888888888888889998765
No 19
>d1ix9a1 a.2.11.1 (A:1-90) Mn superoxide dismutase (MnSOD) {Escherichia coli [TaxId: 562]}
Probab=28.49 E-value=45 Score=18.39 Aligned_cols=37 Identities=5% Similarity=0.114 Sum_probs=19.3
Q ss_pred cchhhhhhhhhhhhHhh--HHHHHHHHHHHHHHHHHhHH
Q 043681 45 EKLDQVSEMSSRLTSES--RIYADKAKDLNRQALIRKWA 81 (101)
Q Consensus 45 e~Le~L~~ks~~L~~~s--~~f~~~a~kl~r~~~w~~~k 81 (101)
..++++......+...+ ..|-..+.-.+-...|+.+|
T Consensus 51 ~~l~~li~~~~~~~~~~~~~l~nnagg~~NH~~fW~~mk 89 (90)
T d1ix9a1 51 LPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLK 89 (90)
T ss_dssp SCHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHTBC
T ss_pred CCHHHHHHHHhhccHHHHHHHHHhhhhHhhHHHHHHHhc
Confidence 34555555555544332 23334445555567787764
No 20
>d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Probab=28.48 E-value=54 Score=19.24 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=29.2
Q ss_pred HHhHHHHHhcccchhhhhhh--hhhhhHhhHHHHHHHHHHHH
Q 043681 34 TRNVQEVLGVGEKLDQVSEM--SSRLTSESRIYADKAKDLNR 73 (101)
Q Consensus 34 ~~Ni~~il~Rge~Le~L~~k--s~~L~~~s~~f~~~a~kl~r 73 (101)
..-+.++|+|=..|.++..- -++|+..-+.-..+|+++.|
T Consensus 11 a~~v~~~LqrYkeLqDIIaiLG~dELSeeDk~~V~RARklqr 52 (114)
T d1skye1 11 ARKVQQTLERYKELQDIIAILGMDELSDEDKLVVHRARRIQF 52 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhcCHHHHHHHHHHHHHHH
Confidence 44556677777777766654 37888888888899999865
No 21
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.87 E-value=39 Score=19.99 Aligned_cols=30 Identities=7% Similarity=0.119 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHhcccch
Q 043681 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKL 47 (101)
Q Consensus 17 dki~~~~~~v~ev~~im~~Ni~~il~Rge~L 47 (101)
|.++++|..|++.-+.|-..|.-+ ++...-
T Consensus 2 DrLTQLQd~lnqla~~f~nsig~L-~~~a~~ 31 (129)
T d1ykhb1 2 DRMTQLQICLDQMTEQFCATLNYI-DKNHGF 31 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHSSCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH-hcCCCc
Confidence 889999999999999999999855 444333
No 22
>d1b8za_ a.55.1.1 (A:) HU protein {Thermotoga maritima [TaxId: 2336]}
Probab=27.68 E-value=29 Score=18.94 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhHHHHHhcccchhh
Q 043681 23 NDELYEVHQIMTRNVQEVLGVGEKLDQ 49 (101)
Q Consensus 23 ~~~v~ev~~im~~Ni~~il~Rge~Le~ 49 (101)
+.+++++-+.+.+.|.+.|.+|++++.
T Consensus 18 ~~~~~~~~~~~~~~i~~~L~~~~~v~l 44 (90)
T d1b8za_ 18 KKDVKLILDTILETITEALAKGEKVQI 44 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcee
Confidence 566888888888888888999988764
No 23
>d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain 3 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=26.79 E-value=49 Score=19.54 Aligned_cols=39 Identities=23% Similarity=0.450 Sum_probs=27.9
Q ss_pred HhHHHHHhcccchhhhhhh--hhhhhHhhHHHHHHHHHHHH
Q 043681 35 RNVQEVLGVGEKLDQVSEM--SSRLTSESRIYADKAKDLNR 73 (101)
Q Consensus 35 ~Ni~~il~Rge~Le~L~~k--s~~L~~~s~~f~~~a~kl~r 73 (101)
.-+.++|+|=..|.++..- -++|+..-+.-..+|+++.|
T Consensus 15 ~~V~~~LqrYkeLqdIIaiLG~dELSeeDk~~V~RARklqr 55 (118)
T d2jdid1 15 RGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQR 55 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHcChhhcCHHHhHHHHHHHHHHH
Confidence 3355666666666665543 47888888888899999876
No 24
>d1owfa_ a.55.1.1 (A:) Integration host factor alpha subunit (IHFA) {Escherichia coli [TaxId: 562]}
Probab=24.87 E-value=34 Score=18.83 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHhcccchhh
Q 043681 22 LNDELYEVHQIMTRNVQEVLGVGEKLDQ 49 (101)
Q Consensus 22 ~~~~v~ev~~im~~Ni~~il~Rge~Le~ 49 (101)
-+.+++++-+.+.+-|...|.+|++++.
T Consensus 18 sk~~~~~~~~~~~~~i~~~L~~g~~V~l 45 (96)
T d1owfa_ 18 SKRDAKELVELFFEEIRRALENGEQVKL 45 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCEEEe
Confidence 3567888888888888888899987653
No 25
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.26 E-value=50 Score=17.48 Aligned_cols=14 Identities=36% Similarity=0.413 Sum_probs=6.5
Q ss_pred HHhHHHHHhcccch
Q 043681 34 TRNVQEVLGVGEKL 47 (101)
Q Consensus 34 ~~Ni~~il~Rge~L 47 (101)
...++.+.+.|+.|
T Consensus 52 ~~~~~~~~~~g~~L 65 (106)
T d1s35a1 52 QDSYQRVKESGEKV 65 (106)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 26
>d1k9xa_ d.92.1.5 (A:) Thermostable carboxypeptidase 1 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=23.43 E-value=1e+02 Score=22.05 Aligned_cols=63 Identities=16% Similarity=0.112 Sum_probs=47.3
Q ss_pred HhCCcHHHhHHHHHHH--HHHHHHHHHHHhHHHHHhcccch-hhhhhhhhhhhHhhHHHHHHHHHH
Q 043681 9 LYQDTRTQRNIAKLND--ELYEVHQIMTRNVQEVLGVGEKL-DQVSEMSSRLTSESRIYADKAKDL 71 (101)
Q Consensus 9 ~y~d~~~~dki~~~~~--~v~ev~~im~~Ni~~il~Rge~L-e~L~~ks~~L~~~s~~f~~~a~kl 71 (101)
...||.-.+-+.++++ ++++....+..-+.+-.++-.+| .+|+..-..+.+.|..-...||+-
T Consensus 58 ~~t~~~~~~ll~~~~~~~~L~~~~~anlr~~~r~~~~~~~iP~elv~~~a~~~s~a~~~W~~AR~~ 123 (497)
T d1k9xa_ 58 LLLHPEFVNLVEKAKGLENLNEYERGIVRVLDRSIRIARAFPPEFIREVSETTSLATKAWEEAKAK 123 (497)
T ss_dssp HHTCHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhcCHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHHHHhhhcc
Confidence 3567777777777754 37788887778888888888888 777888888888887777777653
No 27
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=21.59 E-value=59 Score=17.32 Aligned_cols=47 Identities=11% Similarity=0.206 Sum_probs=21.9
Q ss_pred hHHHHHHHhCCcHHHhHHHHHHHHHHH------HHHHHHHhHHHHHhcccchh
Q 043681 2 FIQKTKKLYQDTRTQRNIAKLNDELYE------VHQIMTRNVQEVLGVGEKLD 48 (101)
Q Consensus 2 ~i~~~~~~y~d~~~~dki~~~~~~v~e------v~~im~~Ni~~il~Rge~Le 48 (101)
+|.+......+++-.+.+..++..+.. --+.-.++++.+.+.|+.|-
T Consensus 17 Wl~e~e~~l~~~~~g~d~~~~~~~~~~h~~~~~ei~~~~~~i~~l~~~~~~L~ 69 (110)
T d1u5pa1 17 WLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLM 69 (110)
T ss_dssp HHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 455555444333222333333333333 33444566666666666553
No 28
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=20.99 E-value=65 Score=17.54 Aligned_cols=12 Identities=17% Similarity=0.216 Sum_probs=7.9
Q ss_pred HHHHHHHhCCcH
Q 043681 3 IQKTKKLYQDTR 14 (101)
Q Consensus 3 i~~~~~~y~d~~ 14 (101)
|++++.-|.+|.
T Consensus 22 I~~ll~l~~~~~ 33 (94)
T d1q08a_ 22 IRELLSIRIDPE 33 (94)
T ss_dssp HHHHHHHHHCGG
T ss_pred HHHHHHhccCCC
Confidence 677777775543
No 29
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.72 E-value=45 Score=18.32 Aligned_cols=28 Identities=4% Similarity=0.166 Sum_probs=18.0
Q ss_pred HHHHHHHHhHHHHHhcccchhhhhhhhh
Q 043681 28 EVHQIMTRNVQEVLGVGEKLDQVSEMSS 55 (101)
Q Consensus 28 ev~~im~~Ni~~il~Rge~Le~L~~ks~ 55 (101)
..++.+++.+..-++|-|.|..+.+..+
T Consensus 56 ~~k~~l~~k~~eYl~RAE~LK~~l~~~~ 83 (93)
T d1wfda_ 56 SKRCVLRTKISGYMDRAENIKKYLDQEK 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777766655443
No 30
>d2p4ka1 a.2.11.1 (A:1-83) Mn superoxide dismutase (MnSOD) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.31 E-value=65 Score=17.34 Aligned_cols=18 Identities=6% Similarity=0.082 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 043681 64 YADKAKDLNRQALIRKWA 81 (101)
Q Consensus 64 f~~~a~kl~r~~~w~~~k 81 (101)
|...+.-.+-..+|+.++
T Consensus 65 ~nN~gg~~NH~~fW~~m~ 82 (83)
T d2p4ka1 65 KFNGGGHINHSIFWTNLS 82 (83)
T ss_dssp HHHHHHHHHHHHHHHTBC
T ss_pred ccccchHhhHHHHhcccC
Confidence 334444556666777654
No 31
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=20.13 E-value=33 Score=21.71 Aligned_cols=13 Identities=0% Similarity=-0.074 Sum_probs=0.0
Q ss_pred hhhhHhhHHHHHH
Q 043681 55 SRLTSESRIYADK 67 (101)
Q Consensus 55 ~~L~~~s~~f~~~ 67 (101)
+++...+..++.+
T Consensus 200 ~~~~~i~~~~~~~ 212 (260)
T d1oede_ 200 EACNFIAKSTKEQ 212 (260)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444433
No 32
>d1b3qa1 a.30.2.1 (A:293-354) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]}
Probab=20.07 E-value=57 Score=16.55 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=26.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhhhhhHhhHHHHH
Q 043681 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYAD 66 (101)
Q Consensus 16 ~dki~~~~~~v~ev~~im~~Ni~~il~Rge~Le~L~~ks~~L~~~s~~f~~ 66 (101)
.++++++.+-+.|. -|-+..+..+.++.+ .+.+.+..+.+...+...+.
T Consensus 8 ~~kLD~LmnlvGEL-vi~r~~L~~~~~~~~-~~~l~~~~~~l~r~~~eLQ~ 56 (62)
T d1b3qa1 8 IEKLDNLMDLMGEL-VIARSRILETLKKYN-IKELDESLSHLSRITLDLQN 56 (62)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHTTSSCC-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHHH
Confidence 46777777777776 455555555544332 33444444444444444433
Done!