BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043682
(360 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 196 bits (498), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 111/320 (34%), Positives = 174/320 (54%), Gaps = 31/320 (9%)
Query: 26 VGINYGQIANNXXXXXXXXXXXXXXNISRVKLYDTDPVVLSAFSNSNVDFIIGLGNEYLE 85
VG+ YG NN NI+R+++YD + VL A SN++ I+G+ N L+
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQ 61
Query: 86 NMTDPAKAQ--------------------IGNEV--FKGEDTKLYSYLLPAMQTVYKTLV 123
++T+P+ A+ +GNE+ L ++LPAM+ ++ +
Sbjct: 62 SLTNPSNAKSWVQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAIR 121
Query: 124 DLGLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVYIQPILSFHSQVKSPFLINAYPYF 183
GL Q+ V++A L ++ NS+PPSAG+FR D+ Y+ PI+ F S ++SP L N YPYF
Sbjct: 122 SAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVRSYLNPIIRFLSSIRSPLLANIYPYF 181
Query: 184 AYKDSPNQVPLDYVLF-QPNQGTTDPITNLKYDNMLYAQIDAVYSAMKAMGHTDIEVRIS 242
Y +P + L Y LF P+ D Y N+ A +DA+YSA++ +EV +S
Sbjct: 182 TYAGNPRDISLPYALFTSPSVVVWD--GQRGYKNLFDATLDALYSALERASGGSLEVVVS 239
Query: 243 ETGWPSKGDENEAGATVENAELYNGNLLKRIQQKQGTPGKPSVPVDVYFFALFNENLKPG 302
E+GWPS G AT +N Y NL++ + K+GTP +P ++ Y FA+F+EN K
Sbjct: 240 ESGWPSAG---AFAATFDNGRTYLSNLIQHV--KRGTPKRPKRAIETYLFAMFDEN-KKQ 293
Query: 303 PTSERNYGLYYPNGNPVYNI 322
P E+++GL++PN YN+
Sbjct: 294 PEVEKHFGLFFPNKWQKYNL 313
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 187 bits (476), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 110/318 (34%), Positives = 171/318 (53%), Gaps = 29/318 (9%)
Query: 26 VGINYGQIANNXXXXXXXXXXXXXXNISRVKLYDTDPVVLSAFSNSNVDFIIGLGNEYLE 85
+G+ YG + NN NI+R++LYD + L A NSN+ ++ + ++
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 86 NM-TDPAKA--------------------QIGNEVFKGEDTKLYSYLLPAMQTVYKTLVD 124
++ ++P+ A +GNE+ G D L Y+LPAM+ +Y L
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGSD--LAQYILPAMRNIYNALSS 118
Query: 125 LGLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVYIQPILSFHSQVKSPFLINAYPYFA 184
GL Q+ V++A +L S+PPSAG+F Y+ PI+ F + +P L+N YPYF+
Sbjct: 119 AGLQNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNVYPYFS 178
Query: 185 YKDSPNQVPLDYVLFQPNQGTTDPITNLKYDNMLYAQIDAVYSAMKAMGHTDIEVRISET 244
Y +P Q+ L Y LF + G Y N+ A +DAV++A++ +G ++ V +SE+
Sbjct: 179 YTGNPGQISLPYALFTAS-GVVVQDGRFSYQNLFDAIVDAVFAALERVGGANVAVVVSES 237
Query: 245 GWPSKGDENEAGATVENAELYNGNLLKRIQQKQGTPGKPSVPVDVYFFALFNENLKPGPT 304
GWPS G E A+ NA+ YN NL++ + GTP +P ++ Y F +FNEN K G
Sbjct: 238 GWPSAGGGAE--ASTSNAQTYNQNLIRHV--GGGTPRRPGKEIEAYIFEMFNENQKAGGI 293
Query: 305 SERNYGLYYPNGNPVYNI 322
E+N+GL+YPN PVY I
Sbjct: 294 -EQNFGLFYPNKQPVYQI 310
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 187 bits (476), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 105/318 (33%), Positives = 173/318 (54%), Gaps = 29/318 (9%)
Query: 26 VGINYGQIANNXXXXXXXXXXXXXXNISRVKLYDTDPVVLSAFSNSNVDFIIGLGNEYLE 85
+G+ YG+IANN NI ++++Y V +A SN++ I+ + N+ LE
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 86 NMTDPAKAQ--------------------IGNEVFKGEDTKLYS-YLLPAMQTVYKTLVD 124
+ +P+ A +GNEV G ++ Y+ ++ PAM+ +Y L
Sbjct: 63 ALANPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALSS 122
Query: 125 LGLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVYIQPILSFHSQVKSPFLINAYPYFA 184
GL Q+ V+++ +L N++PP FR++ +I PI+ F ++ P L N YPYF
Sbjct: 123 AGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYFG 182
Query: 185 YKDSPNQVPLDYVLFQPNQGTTDPITNLKYDNMLYAQIDAVYSAMKAMGHTDIEVRISET 244
+ D+ N VPL Y LF NQ + + Y N+ A +D++Y A + +G +IE+ +SE+
Sbjct: 183 HIDNTNAVPLSYALF--NQQRRN---DTGYQNLFDALVDSMYFATEKLGGQNIEIIVSES 237
Query: 245 GWPSKGDENEAGATVENAELYNGNLLKRIQQKQGTPGKPSVPVDVYFFALFNENLKPGPT 304
GWPS+G AT++NA Y NL+ +++ GTP KP ++ Y FA+F+EN K G
Sbjct: 238 GWPSEG---HPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEA 294
Query: 305 SERNYGLYYPNGNPVYNI 322
SE+++GL+ P+ P Y +
Sbjct: 295 SEKHFGLFNPDQRPKYQL 312
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/318 (32%), Positives = 172/318 (54%), Gaps = 29/318 (9%)
Query: 26 VGINYGQIANNXXXXXXXXXXXXXXNISRVKLYDTDPVVLSAFSNSNVDFIIGLGNEYLE 85
+G+ YG+IANN NI ++++Y V +A SN++ I+ + N+ LE
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 86 NMTDPAKAQ--------------------IGNEVFKGEDTKLYS-YLLPAMQTVYKTLVD 124
+ +P+ A +GNEV G ++ Y+ ++ PAM+ +Y L
Sbjct: 63 ALANPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALSS 122
Query: 125 LGLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVYIQPILSFHSQVKSPFLINAYPYFA 184
GL Q+ V+++ +L N++PP FR++ +I PI+ F ++ P L N YPYF
Sbjct: 123 AGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYFG 182
Query: 185 YKDSPNQVPLDYVLFQPNQGTTDPITNLKYDNMLYAQIDAVYSAMKAMGHTDIEVRISET 244
+ D+ N VPL Y LF NQ + + Y N+ A +D++Y A + +G +IE+ +S +
Sbjct: 183 HIDNTNAVPLSYALF--NQQRRN---DTGYQNLFDALVDSMYFATEKLGGQNIEIIVSAS 237
Query: 245 GWPSKGDENEAGATVENAELYNGNLLKRIQQKQGTPGKPSVPVDVYFFALFNENLKPGPT 304
GWPS+G AT++NA Y NL+ +++ GTP KP ++ Y FA+F+EN K G
Sbjct: 238 GWPSEG---HPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEA 294
Query: 305 SERNYGLYYPNGNPVYNI 322
SE+++GL+ P+ P Y +
Sbjct: 295 SEKHFGLFNPDQRPKYQL 312
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 105/318 (33%), Positives = 158/318 (49%), Gaps = 35/318 (11%)
Query: 26 VGINYGQIANNXXXXXXXXXXXXXXNISRVKLYDTDPVVLSAFSNSNVDFIIGLGNEYLE 85
+G+ YG I NN I+ +++Y D LSA NS + I+ +GN+ L
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA 60
Query: 86 NM---TDPAKAQI------------------GNEVFKGEDTKLYSYLLPAMQTVYKTLVD 124
N+ T A + + GNEV G + LPAM+ + +
Sbjct: 61 NIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQGGATQSI----LPAMRNL-NAALS 115
Query: 125 LGLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVYIQPILSFHSQVKSPFLINAYPYFA 184
+ V+++ D +ANSFPPSAG F+ Y+ + + +P L N YPYFA
Sbjct: 116 AAGLGAIKVSTSIRFDEVANSFPPSAGVFKN---AYMTDVARLLASTGAPLLANVYPYFA 172
Query: 185 YKDSPNQVPLDYVLFQPNQGTTDPITNLKYDNMLYAQIDAVYSAMKAMGHTDIEVRISET 244
Y+D+P + L+Y FQP D L Y ++ A +DAVY+A++ G ++V +SE+
Sbjct: 173 YRDNPGSISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSES 232
Query: 245 GWPSKGDENEAGATVENAELYNGNLLKRIQQKQGTPGKPSVPVDVYFFALFNENLKPGPT 304
GWPS G A+ NA YN L+ + GTP K ++ Y FA+FNEN K G
Sbjct: 233 GWPSAGG---FAASAGNARTYNQGLINHV--GGGTPKKREA-LETYIFAMFNENQKTGDA 286
Query: 305 SERNYGLYYPNGNPVYNI 322
+ER++GL+ P+ +P YNI
Sbjct: 287 TERSFGLFNPDKSPAYNI 304
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 154 bits (389), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 101/317 (31%), Positives = 154/317 (48%), Gaps = 33/317 (10%)
Query: 26 VGINYGQIANNXXXXXXXXXXXXXXNISRVKLYDTDPVVLSAFSNSNVDFIIGLGNEYLE 85
+G+ YG ANN I ++LY + L A + ++ ++G N+ L
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 86 NMTDPAKAQ--------------------IGNEVFKGEDTKLYSYLLPAMQTVYKTLVDL 125
N+ A +GNEV G L +PAM+ V+ LV
Sbjct: 61 NLAASPAAAASWVKSNIQAYPKVSFRYVCVGNEVAGGATRNL----VPAMKNVHGALVAA 116
Query: 126 GLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVYIQPILSFHSQVKSPFLINAYPYFAY 185
GL + VT++ S IL PPSAGSF + A ++ P++ F ++ +P + N YPY A+
Sbjct: 117 GLG-HIKVTTSVSQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYPYLAW 175
Query: 186 KDSPNQVPLDYVLFQPNQGTTDPITNLKYDNMLYAQIDAVYSAMKAMGHTDIEVRISETG 245
+P+ + + Y LF + GT Y N+ +DA Y+AM G + +++ +SE+G
Sbjct: 176 AYNPSAMDMGYALFNAS-GTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVSESG 234
Query: 246 WPSKGDENEAGATVENAELYNGNLLKRIQQKQGTPGKPSVPVDVYFFALFNENLKPGPTS 305
WPS G AT NA YN +L+ + +GTP P ++ Y FA+FNEN K
Sbjct: 235 WPSGGGT---AATPANARFYNQHLINHV--GRGTPRHPGA-IETYIFAMFNENQKDSGV- 287
Query: 306 ERNYGLYYPNGNPVYNI 322
E+N+GL+YPN VY I
Sbjct: 288 EQNWGLFYPNMQHVYPI 304
>pdb|2C8J|A Chain A, Crystal Structure Of Ferrochelatase Hemh-1 From Bacillus
Anthracis, Str. Ames
pdb|2C8J|B Chain B, Crystal Structure Of Ferrochelatase Hemh-1 From Bacillus
Anthracis, Str. Ames
Length = 311
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
Query: 63 VVLSAFSNSNVDFIIGLGNEYLENMTDPAKAQIGNEVFKGEDT-----KLYSYLLPAMQT 117
V+ +S +V +G E E ++GN G D+ K Y + A+++
Sbjct: 111 VLAPHYSTFSVKSYVGRAQEEAE--------KLGNLTIHGIDSWYKEPKFIQYWVDAVKS 162
Query: 118 VYKTLVDLGLDKQVIVTSAHSL 139
+Y + D +K V++ SAHSL
Sbjct: 163 IYSGMSDAEREKAVLIVSAHSL 184
>pdb|4F4E|A Chain A, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase
From Burkholderia Pseudomallei Covalently Bound To
Pyridoxal Phosphate
pdb|4F4E|B Chain B, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase
From Burkholderia Pseudomallei Covalently Bound To
Pyridoxal Phosphate
Length = 420
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 64 VLSAFSNSNVDFIIGLGNEYLENMTDPAKAQIGNEVFKGEDTKLYSYLLPAMQTVYKTLV 123
+ SA + D I+GL NE T P K +G V+ ED K+ LL A++ K V
Sbjct: 24 LFSAVELAPRDPILGL-NEAFNADTRPTKVNLGVGVYTNEDGKI--PLLRAVRDAEKARV 80
Query: 124 DLGL 127
+ GL
Sbjct: 81 EAGL 84
>pdb|4EFF|A Chain A, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase
From Burkholderia Pseudomallei
Length = 420
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 64 VLSAFSNSNVDFIIGLGNEYLENMTDPAKAQIGNEVFKGEDTKLYSYLLPAMQTVYKTLV 123
+ SA + D I+GL NE T P K +G V+ ED K+ LL A++ K V
Sbjct: 24 LFSAVELAPRDPILGL-NEAFNADTRPTKVNLGVGVYTNEDGKI--PLLRAVRDAEKARV 80
Query: 124 DLGL 127
+ GL
Sbjct: 81 EAGL 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,916,450
Number of Sequences: 62578
Number of extensions: 472680
Number of successful extensions: 953
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 924
Number of HSP's gapped (non-prelim): 9
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)