Query 043682
Match_columns 360
No_of_seqs 165 out of 1134
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:19:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043682.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043682hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 1.3E-79 2.8E-84 597.7 15.9 289 26-324 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 2.2E-46 4.9E-51 349.4 19.3 238 21-316 41-305 (305)
3 PF07745 Glyco_hydro_53: Glyco 99.1 8E-09 1.7E-13 102.0 18.9 228 40-321 26-328 (332)
4 COG3867 Arabinogalactan endo-1 98.7 5.8E-07 1.3E-11 86.7 17.0 236 39-329 64-395 (403)
5 PF03198 Glyco_hydro_72: Gluca 98.5 8.4E-07 1.8E-11 86.5 11.9 110 26-137 30-183 (314)
6 PRK10150 beta-D-glucuronidase; 98.2 0.00018 3.9E-09 76.5 20.7 224 38-322 310-585 (604)
7 PF00150 Cellulase: Cellulase 97.7 0.0062 1.3E-07 57.2 20.0 192 39-275 22-267 (281)
8 PF11790 Glyco_hydro_cc: Glyco 96.5 0.065 1.4E-06 50.6 13.2 67 237-318 166-232 (239)
9 PF02836 Glyco_hydro_2_C: Glyc 95.4 0.3 6.5E-06 47.2 12.9 57 25-81 17-81 (298)
10 smart00633 Glyco_10 Glycosyl h 94.1 0.21 4.5E-06 47.4 8.1 77 228-322 174-251 (254)
11 PF00232 Glyco_hydro_1: Glycos 88.4 0.29 6.3E-06 50.5 2.4 74 234-315 353-430 (455)
12 PRK09936 hypothetical protein; 79.5 6.7 0.00015 38.5 7.2 58 25-82 21-95 (296)
13 TIGR03356 BGL beta-galactosida 75.4 7.5 0.00016 40.0 6.7 78 234-317 335-414 (427)
14 PF03662 Glyco_hydro_79n: Glyc 71.9 13 0.00029 36.9 7.2 153 63-252 113-301 (319)
15 PRK13511 6-phospho-beta-galact 71.9 9 0.0002 39.9 6.3 77 234-317 365-446 (469)
16 PLN02998 beta-glucosidase 65.7 11 0.00025 39.6 5.6 76 234-317 390-466 (497)
17 smart00481 POLIIIAc DNA polyme 64.2 25 0.00053 25.9 5.8 45 37-81 14-63 (67)
18 PF00925 GTP_cyclohydro2: GTP 63.4 8 0.00017 34.7 3.5 42 38-79 126-167 (169)
19 TIGR01579 MiaB-like-C MiaB-lik 63.3 1.3E+02 0.0028 30.5 12.6 59 108-185 272-330 (414)
20 PF02449 Glyco_hydro_42: Beta- 61.2 11 0.00024 37.6 4.4 41 41-81 13-69 (374)
21 PLN02849 beta-glucosidase 61.2 18 0.0004 38.1 6.1 76 234-317 383-461 (503)
22 cd02875 GH18_chitobiase Chitob 59.7 49 0.0011 33.2 8.7 115 51-183 55-190 (358)
23 PLN02814 beta-glucosidase 57.6 20 0.00043 37.8 5.7 75 234-317 385-461 (504)
24 PF01229 Glyco_hydro_39: Glyco 57.5 2.4E+02 0.0053 29.3 18.0 181 95-320 161-351 (486)
25 PRK14334 (dimethylallyl)adenos 56.8 86 0.0019 32.2 10.1 57 108-183 271-327 (440)
26 PF02449 Glyco_hydro_42: Beta- 55.0 80 0.0017 31.5 9.3 28 108-137 208-235 (374)
27 TIGR01233 lacG 6-phospho-beta- 50.6 37 0.0008 35.4 6.3 76 234-317 364-444 (467)
28 PRK14326 (dimethylallyl)adenos 49.6 1.4E+02 0.003 31.5 10.4 56 108-182 291-346 (502)
29 PRK00393 ribA GTP cyclohydrola 49.0 27 0.00059 32.1 4.5 33 44-76 134-166 (197)
30 TIGR00505 ribA GTP cyclohydrol 48.7 28 0.0006 31.8 4.5 33 44-76 131-163 (191)
31 PF00331 Glyco_hydro_10: Glyco 46.9 30 0.00064 34.1 4.7 89 225-321 222-312 (320)
32 PRK09589 celA 6-phospho-beta-g 46.4 50 0.0011 34.5 6.5 75 236-317 367-447 (476)
33 PF04909 Amidohydro_2: Amidohy 45.9 43 0.00094 30.6 5.4 91 111-247 83-175 (273)
34 PRK14338 (dimethylallyl)adenos 45.3 1.5E+02 0.0033 30.7 9.8 128 37-184 183-346 (459)
35 PF14606 Lipase_GDSL_3: GDSL-l 45.3 1.4E+02 0.003 27.2 8.4 54 221-275 79-133 (178)
36 PRK14328 (dimethylallyl)adenos 43.6 3.2E+02 0.0069 28.1 11.8 58 108-184 281-338 (439)
37 KOG0626 Beta-glucosidase, lact 43.0 1.3E+02 0.0028 32.1 8.7 75 233-315 404-486 (524)
38 PRK09593 arb 6-phospho-beta-gl 42.9 74 0.0016 33.3 7.1 74 237-317 369-448 (478)
39 PRK14336 (dimethylallyl)adenos 42.6 1.8E+02 0.0038 29.8 9.7 58 108-184 258-315 (418)
40 PF14871 GHL6: Hypothetical gl 42.3 59 0.0013 28.0 5.3 42 39-80 1-65 (132)
41 TIGR03632 bact_S11 30S ribosom 42.0 60 0.0013 27.0 5.1 37 41-77 50-91 (108)
42 TIGR01125 MiaB-like tRNA modif 41.8 2.4E+02 0.0053 28.7 10.6 59 108-185 269-327 (430)
43 PRK09852 cryptic 6-phospho-bet 39.8 75 0.0016 33.3 6.5 75 236-317 365-444 (474)
44 PRK15014 6-phospho-beta-glucos 38.8 62 0.0013 33.9 5.8 75 236-317 368-448 (477)
45 PRK12485 bifunctional 3,4-dihy 38.7 38 0.00082 34.4 4.0 32 44-76 331-362 (369)
46 COG4782 Uncharacterized protei 38.2 1.1E+02 0.0024 31.2 7.1 42 231-275 142-186 (377)
47 cd00641 GTP_cyclohydro2 GTP cy 37.6 52 0.0011 30.1 4.4 33 44-76 133-165 (193)
48 PF12876 Cellulase-like: Sugar 36.7 42 0.00091 26.4 3.3 28 108-137 37-64 (88)
49 PF05990 DUF900: Alpha/beta hy 36.5 88 0.0019 29.3 5.9 41 231-274 44-87 (233)
50 PRK14019 bifunctional 3,4-dihy 35.6 45 0.00098 33.8 4.0 32 44-76 328-359 (367)
51 PRK14327 (dimethylallyl)adenos 34.8 2.9E+02 0.0063 29.3 10.0 58 108-184 346-403 (509)
52 PRK14330 (dimethylallyl)adenos 34.6 5.2E+02 0.011 26.4 12.6 59 108-185 274-332 (434)
53 COG1433 Uncharacterized conser 34.6 82 0.0018 26.9 4.9 40 41-80 55-94 (121)
54 TIGR03628 arch_S11P archaeal r 34.5 89 0.0019 26.5 5.0 37 41-77 53-102 (114)
55 PRK14337 (dimethylallyl)adenos 33.8 3.3E+02 0.0071 28.1 10.1 57 108-183 283-339 (446)
56 PF14488 DUF4434: Domain of un 33.7 33 0.00072 30.7 2.5 21 62-82 68-88 (166)
57 PRK14339 (dimethylallyl)adenos 32.9 3.5E+02 0.0075 27.7 10.0 103 50-183 210-320 (420)
58 CHL00041 rps11 ribosomal prote 32.2 1E+02 0.0023 25.9 5.1 35 42-76 64-103 (116)
59 PRK09311 bifunctional 3,4-dihy 32.2 80 0.0017 32.4 5.2 34 43-76 338-371 (402)
60 PRK09318 bifunctional 3,4-dihy 31.7 66 0.0014 32.9 4.5 37 44-80 320-356 (387)
61 PRK08815 GTP cyclohydrolase; P 31.4 66 0.0014 32.7 4.4 34 44-77 305-338 (375)
62 PRK09314 bifunctional 3,4-dihy 30.9 65 0.0014 32.4 4.2 40 37-76 294-334 (339)
63 PRK09319 bifunctional 3,4-dihy 30.7 89 0.0019 33.5 5.4 40 41-80 340-379 (555)
64 PF00411 Ribosomal_S11: Riboso 30.6 83 0.0018 26.2 4.2 37 41-77 50-91 (110)
65 cd02874 GH18_CFLE_spore_hydrol 30.2 2.3E+02 0.0049 27.3 7.9 63 62-127 48-138 (313)
66 COG2159 Predicted metal-depend 30.0 2.7E+02 0.0059 27.0 8.4 96 112-251 112-209 (293)
67 PRK09607 rps11p 30S ribosomal 29.9 1.1E+02 0.0025 26.5 5.0 37 41-77 60-109 (132)
68 PRK14332 (dimethylallyl)adenos 29.8 6.4E+02 0.014 26.1 12.7 113 108-246 285-397 (449)
69 TIGR00089 RNA modification enz 29.2 5.9E+02 0.013 25.9 11.0 59 108-185 273-331 (429)
70 PF01055 Glyco_hydro_31: Glyco 28.2 4E+02 0.0086 27.0 9.6 135 108-296 42-180 (441)
71 PLN02831 Bifunctional GTP cycl 28.2 1.1E+02 0.0024 32.0 5.4 35 42-76 371-405 (450)
72 PRK13347 coproporphyrinogen II 28.1 1.3E+02 0.0027 31.1 6.0 21 108-128 262-282 (453)
73 TIGR00640 acid_CoA_mut_C methy 27.3 1.5E+02 0.0032 25.4 5.3 47 38-84 40-98 (132)
74 cd02071 MM_CoA_mut_B12_BD meth 27.0 3.4E+02 0.0074 22.4 7.4 73 38-116 37-121 (122)
75 PRK05309 30S ribosomal protein 26.7 1.5E+02 0.0032 25.5 5.2 36 41-76 67-107 (128)
76 cd06598 GH31_transferase_CtsZ 24.6 6.6E+02 0.014 24.5 10.7 27 159-185 70-96 (317)
77 PF02811 PHP: PHP domain; Int 24.5 2E+02 0.0043 24.4 5.7 47 35-81 13-64 (175)
78 TIGR03234 OH-pyruv-isom hydrox 24.2 2E+02 0.0042 26.7 6.0 51 26-77 3-57 (254)
79 PLN00196 alpha-amylase; Provis 23.7 3.1E+02 0.0067 28.4 7.8 56 25-80 28-113 (428)
80 cd02872 GH18_chitolectin_chito 23.2 2.4E+02 0.0053 27.7 6.8 58 108-184 133-192 (362)
81 COG0621 MiaB 2-methylthioadeni 23.0 2.9E+02 0.0064 28.8 7.4 127 26-184 196-336 (437)
82 PRK14042 pyruvate carboxylase 21.5 1.4E+02 0.003 32.4 4.8 41 40-80 94-144 (596)
83 PRK12581 oxaloacetate decarbox 21.3 1.5E+02 0.0032 31.2 4.9 37 44-80 111-153 (468)
84 COG4130 Predicted sugar epimer 21.1 4.1E+02 0.0088 25.5 7.2 92 39-130 18-139 (272)
85 TIGR01162 purE phosphoribosyla 21.0 1.4E+02 0.003 26.8 3.9 48 34-81 8-62 (156)
86 PRK07198 hypothetical protein; 20.8 87 0.0019 32.3 3.0 37 44-80 338-375 (418)
87 COG3934 Endo-beta-mannanase [C 20.7 3.8E+02 0.0082 28.6 7.5 165 95-322 144-312 (587)
88 PRK14340 (dimethylallyl)adenos 20.5 8.2E+02 0.018 25.2 10.2 129 36-184 176-339 (445)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=1.3e-79 Score=597.69 Aligned_cols=289 Identities=49% Similarity=0.959 Sum_probs=230.6
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCeEEEccCChHHHHHhhcCCCeEEEEeCchhhcccc-Cccccc----------
Q 043682 26 VGINYGQIANNLPSPSRVSVLLRSLNISRVKLYDTDPVVLSAFSNSNVDFIIGLGNEYLENMT-DPAKAQ---------- 94 (360)
Q Consensus 26 ~Gv~Yg~~~~~~ps~~~V~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~lGv~n~~l~~la-~~~~A~---------- 94 (360)
+|||||+.++|+|++++|+++||+++|++||||++|+++|+|++++||+|++||+|+++++++ ++..|.
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 699999999999999999999999999999999999999999999999999999999999886 333322
Q ss_pred ----------cccceecCCCCchHhHHHHHHHHHHHHHHhCCCCCceEEeeccchhhhhccCCCCCcccccchhhhHHHH
Q 043682 95 ----------IGNEVFKGEDTKLYSYLLPAMQTVYKTLVDLGLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVYIQPI 164 (360)
Q Consensus 95 ----------VGNEvl~~~~~~~~~~Lv~~m~~vr~aL~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~F~~~~~~~l~~~ 164 (360)
||||++..... ..|+|+|+++|++|++.||++.|||+|++.++++..+||||.|.|++++.+.|.++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~---~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~ 157 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDN---AYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPL 157 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGG---GGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHH
T ss_pred CcccceeeeecccccccCccc---eeeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHH
Confidence 99999976433 28999999999999999999889999999999999999999999999999999999
Q ss_pred HhhhhhcCCCceeecCCCccccCCCCCcccccccccCCCCcccCCCccchhHHHHHHHHHHHHHHHHcCCCCccEEEeee
Q 043682 165 LSFHSQVKSPFLINAYPYFAYKDSPNQVPLDYVLFQPNQGTTDPITNLKYDNMLYAQIDAVYSAMKAMGHTDIEVRISET 244 (360)
Q Consensus 165 ldfL~~~~s~~~vNiyPff~~~~~p~~i~ldyAlf~~~~~~vd~~~~~~y~n~fda~~da~~~al~k~g~~~~~vvVtET 244 (360)
++||++++||+|+|+||||.+..+|..++||||+|+++..++|. +++|+|+||+|+|++++||+++|+++++|+||||
T Consensus 158 l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~D~--~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ET 235 (310)
T PF00332_consen 158 LKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVVDG--GLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGET 235 (310)
T ss_dssp HHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SEET--TEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE
T ss_pred HHHhhccCCCceeccchhhhccCCcccCCccccccccccccccc--chhhhHHHHHHHHHHHHHHHHhCCCCceeEEecc
Confidence 99999999999999999999999999999999999999888754 6899999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCcceEEEEEeecCCCCCCCCCCcceeeecCCCceeeeeee
Q 043682 245 GWPSKGDENEAGATVENAELYNGNLLKRIQQKQGTPGKPSVPVDVYFFALFNENLKPGPTSERNYGLYYPNGNPVYNIGI 324 (360)
Q Consensus 245 GWPS~G~~~~~~aS~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE~wK~g~~~E~~wGlf~~d~~~ky~l~~ 324 (360)
||||+|+ ..|+.+||+.|++++++++. .|||+||+..+++||||+|||+||+++.+|||||||++||+|||+++|
T Consensus 236 GWPs~G~---~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~f 310 (310)
T PF00332_consen 236 GWPSAGD---PGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLDF 310 (310)
T ss_dssp ---SSSS---TTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS----
T ss_pred ccccCCC---CCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCCC
Confidence 9999998 37899999999999999998 799999999999999999999999987799999999999999999987
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-46 Score=349.37 Aligned_cols=238 Identities=24% Similarity=0.358 Sum_probs=191.8
Q ss_pred cCCCceeEEecCCCCC--CCCHHHHHHHHHhC-CC-CeEEEccCC----hHHHHHhhcCCCeEEEEeCch-----hhc-c
Q 043682 21 QGLPGVGINYGQIANN--LPSPSRVSVLLRSL-NI-SRVKLYDTD----PVVLSAFSNSNVDFIIGLGNE-----YLE-N 86 (360)
Q Consensus 21 ~~~~~~Gv~Yg~~~~~--~ps~~~V~~llks~-~i-~~VRlY~~d----~~vL~A~~~tgikV~lGv~n~-----~l~-~ 86 (360)
.+-++.+|||+|+.++ ||+.+++..+|..+ ++ ..||+|++| ++|++|+...|+||+||||.. .++ +
T Consensus 41 sa~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~~~~t 120 (305)
T COG5309 41 SASGFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHDAVEKT 120 (305)
T ss_pred ccccccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhhhHHHH
Confidence 4556899999999877 99999998877653 33 399999987 689999999999999999952 122 2
Q ss_pred c--c--Cccccc------cccceecCCCCchHhHHHHHHHHHHHHHHhCCCCCceEEeeccchhhhhccCCCCCcccccc
Q 043682 87 M--T--DPAKAQ------IGNEVFKGEDTKLYSYLLPAMQTVYKTLVDLGLDKQVIVTSAHSLDILANSFPPSAGSFRQD 156 (360)
Q Consensus 87 l--a--~~~~A~------VGNEvl~~~~~~~~~~Lv~~m~~vr~aL~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~F~~~ 156 (360)
+ + .....+ ||||+|+|++.+ +++|+.+|..||.+|+.+|++ .||+|+++|.+|.+
T Consensus 121 il~ay~~~~~~d~v~~v~VGnEal~r~~~t-asql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~------------ 185 (305)
T COG5309 121 ILSAYLPYNGWDDVTTVTVGNEALNRNDLT-ASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVIN------------ 185 (305)
T ss_pred HHHHHhccCCCCceEEEEechhhhhcCCCC-HHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeC------------
Confidence 1 1 111111 999999999997 999999999999999999996 48999999999876
Q ss_pred hhhhHHHHHhhhhhcCCCceeecCCCccccCCCCCcccccccccCCCCcccCCCccchhHHHHHHHHHHHHHHHHcCCCC
Q 043682 157 LAVYIQPILSFHSQVKSPFLINAYPYFAYKDSPNQVPLDYVLFQPNQGTTDPITNLKYDNMLYAQIDAVYSAMKAMGHTD 236 (360)
Q Consensus 157 ~~~~l~~~ldfL~~~~s~~~vNiyPff~~~~~p~~i~ldyAlf~~~~~~vd~~~~~~y~n~fda~~da~~~al~k~g~~~ 236 (360)
++.|++..|| +|+|.||||+.+... +.. + .++..|+.-++.+. ..+
T Consensus 186 -np~l~~~SDf-------ia~N~~aYwd~~~~a------------------~~~---~-~f~~~q~e~vqsa~----g~~ 231 (305)
T COG5309 186 -NPELCQASDF-------IAANAHAYWDGQTVA------------------NAA---G-TFLLEQLERVQSAC----GTK 231 (305)
T ss_pred -ChHHhhhhhh-------hhcccchhccccchh------------------hhh---h-HHHHHHHHHHHHhc----CCC
Confidence 3578888888 999999999976421 111 1 33445666555442 244
Q ss_pred ccEEEeeeccCCCCCCC-CCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCcceEEEEEeecCCCCC-CC-CCCcceeeec
Q 043682 237 IEVRISETGWPSKGDEN-EAGATVENAELYNGNLLKRIQQKQGTPGKPSVPVDVYFFALFNENLKP-GP-TSERNYGLYY 313 (360)
Q Consensus 237 ~~vvVtETGWPS~G~~~-~~~aS~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE~wK~-g~-~~E~~wGlf~ 313 (360)
|+++|+||||||.|... ++.||++||+.|+++++|.++ +.++++|+||+|||+||. +. ++|+|||++.
T Consensus 232 k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~---------~~G~d~fvfeAFdd~WK~~~~y~VEkywGv~~ 302 (305)
T COG5309 232 KTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALR---------SCGYDVFVFEAFDDDWKADGSYGVEKYWGVLS 302 (305)
T ss_pred ccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhh---------ccCccEEEeeeccccccCccccchhhceeeec
Confidence 99999999999999874 568999999999999999998 347899999999999998 44 8999999998
Q ss_pred CCC
Q 043682 314 PNG 316 (360)
Q Consensus 314 ~d~ 316 (360)
.||
T Consensus 303 s~~ 305 (305)
T COG5309 303 SDR 305 (305)
T ss_pred cCC
Confidence 875
No 3
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.08 E-value=8e-09 Score=102.00 Aligned_cols=228 Identities=16% Similarity=0.229 Sum_probs=116.8
Q ss_pred HHHHHHHHHhCCCCeEEEc---c------CC-hHHH---HHhhcCCCeEEEEeCchh---------hc-cccC-------
Q 043682 40 PSRVSVLLRSLNISRVKLY---D------TD-PVVL---SAFSNSNVDFIIGLGNEY---------LE-NMTD------- 89 (360)
Q Consensus 40 ~~~V~~llks~~i~~VRlY---~------~d-~~vL---~A~~~tgikV~lGv~n~~---------l~-~la~------- 89 (360)
..++.++||..|++.||+= + +| ..++ +.+++.||+|+|..--+| ++ +..+
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 4678999999999877764 1 12 3344 455679999999987432 10 0011
Q ss_pred --------------------ccccccccceecC-----CCCchHhHHHHHHHHHHHHHHhCCCCCceEEeeccchhhhhc
Q 043682 90 --------------------PAKAQIGNEVFKG-----EDTKLYSYLLPAMQTVYKTLVDLGLDKQVIVTSAHSLDILAN 144 (360)
Q Consensus 90 --------------------~~~A~VGNEvl~~-----~~~~~~~~Lv~~m~~vr~aL~~~gl~~~I~VsT~~~~~~~~~ 144 (360)
+.-.+||||.-.+ +...-.+.+...++.-.+++++.+-+-+|-|-.+...+.
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~--- 182 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDN--- 182 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSH---
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCch---
Confidence 0111199998532 122226678888888888888755433333333322111
Q ss_pred cCCCCCcccccchhhhHHHHHhhhhhcCCCceeecCCCccccCCCCCcccccccccCCCCcccCCCccchhHHHHHHHHH
Q 043682 145 SFPPSAGSFRQDLAVYIQPILSFHSQVKSPFLINAYPYFAYKDSPNQVPLDYVLFQPNQGTTDPITNLKYDNMLYAQIDA 224 (360)
Q Consensus 145 s~pPs~~~F~~~~~~~l~~~ldfL~~~~s~~~vNiyPff~~~~~p~~i~ldyAlf~~~~~~vd~~~~~~y~n~fda~~da 224 (360)
..++--+..+...-+|| |.++++.||||...- +.+...++.
T Consensus 183 ------~~~~~~f~~l~~~g~d~-----DviGlSyYP~w~~~l----------------------------~~l~~~l~~ 223 (332)
T PF07745_consen 183 ------DLYRWFFDNLKAAGVDF-----DVIGLSYYPFWHGTL----------------------------EDLKNNLND 223 (332)
T ss_dssp ------HHHHHHHHHHHHTTGG------SEEEEEE-STTST-H----------------------------HHHHHHHHH
T ss_pred ------HHHHHHHHHHHhcCCCc-----ceEEEecCCCCcchH----------------------------HHHHHHHHH
Confidence 01111111222234666 889999999998510 222233333
Q ss_pred HHHHHHHcCCCCccEEEeeeccCCCCC-----CC---------CCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCcceEE
Q 043682 225 VYSAMKAMGHTDIEVRISETGWPSKGD-----EN---------EAGATVENAELYNGNLLKRIQQKQGTPGKPSVPVDVY 290 (360)
Q Consensus 225 ~~~al~k~g~~~~~vvVtETGWPS~G~-----~~---------~~~aS~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y 290 (360)
+. ++ | +|+|+|.|||||..-. .+ +-.+|++.|+.|++++++.+++-.+ +...-+|
T Consensus 224 l~---~r--y-~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~-----~~g~Gvf 292 (332)
T PF07745_consen 224 LA---SR--Y-GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPN-----GGGLGVF 292 (332)
T ss_dssp HH---HH--H-T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------TTEEEEE
T ss_pred HH---HH--h-CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhcc-----CCeEEEE
Confidence 22 22 3 6899999999999921 11 1136999999999999999875211 2355677
Q ss_pred EEEeec-CCC-----CCCCCCCcceeeecCCCceeee
Q 043682 291 FFALFN-ENL-----KPGPTSERNYGLYYPNGNPVYN 321 (360)
Q Consensus 291 ~F~~FD-E~w-----K~g~~~E~~wGlf~~d~~~ky~ 321 (360)
+-|.-- ..+ ..|...|.. +||+.+|++--.
T Consensus 293 YWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~s 328 (332)
T PF07745_consen 293 YWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPS 328 (332)
T ss_dssp EE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GG
T ss_pred eeccccccCCcccccCCCCCcccc-ccCCCCCCCchH
Confidence 666421 111 122244444 899988876433
No 4
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.73 E-value=5.8e-07 Score=86.67 Aligned_cols=236 Identities=15% Similarity=0.291 Sum_probs=135.3
Q ss_pred CHHHHHHHHHhCCCCeEEE--c----cCC-----------h---HHHHHhhcCCCeEEEEeCchhhc----------ccc
Q 043682 39 SPSRVSVLLRSLNISRVKL--Y----DTD-----------P---VVLSAFSNSNVDFIIGLGNEYLE----------NMT 88 (360)
Q Consensus 39 s~~~V~~llks~~i~~VRl--Y----~~d-----------~---~vL~A~~~tgikV~lGv~n~~l~----------~la 88 (360)
-++++.+.||..|++.||+ | +.| . .+-+-+++.||||++..--+|-= +..
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~ 143 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWE 143 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhh
Confidence 3567778899999987776 3 333 1 24445567899999987643210 000
Q ss_pred ---------------------------CccccccccceecC-----CCC-chHhHHHHHHHHHHHHHHhCCCCCceEEee
Q 043682 89 ---------------------------DPAKAQIGNEVFKG-----EDT-KLYSYLLPAMQTVYKTLVDLGLDKQVIVTS 135 (360)
Q Consensus 89 ---------------------------~~~~A~VGNEvl~~-----~~~-~~~~~Lv~~m~~vr~aL~~~gl~~~I~VsT 135 (360)
.+.-.+||||.-.+ ++. . ...+...++.--++++...- .|||--
T Consensus 144 ~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~-f~k~a~L~n~g~~avrev~p--~ikv~l 220 (403)
T COG3867 144 NLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRN-FDKMAALLNAGIRAVREVSP--TIKVAL 220 (403)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcC-hHHHHHHHHHHhhhhhhcCC--CceEEE
Confidence 11111299998522 222 2 34555555666666665432 466543
Q ss_pred ccchhhhhccCCCCCcccccchhhhHHHHHhhhhhcCCCceeecCCCccccCCCCCcccccccccCCCCcccCCCccchh
Q 043682 136 AHSLDILANSFPPSAGSFRQDLAVYIQPILSFHSQVKSPFLINAYPYFAYKDSPNQVPLDYVLFQPNQGTTDPITNLKYD 215 (360)
Q Consensus 136 ~~~~~~~~~s~pPs~~~F~~~~~~~l~~~ldfL~~~~s~~~vNiyPff~~~~~p~~i~ldyAlf~~~~~~vd~~~~~~y~ 215 (360)
-.+ + |-..+.|+--...+-+.-+|| |.|+.--||||.+.-+
T Consensus 221 Hla-----~--g~~n~~y~~~fd~ltk~nvdf-----DVig~SyYpyWhgtl~--------------------------- 261 (403)
T COG3867 221 HLA-----E--GENNSLYRWIFDELTKRNVDF-----DVIGSSYYPYWHGTLN--------------------------- 261 (403)
T ss_pred Eec-----C--CCCCchhhHHHHHHHHcCCCc-----eEEeeeccccccCcHH---------------------------
Confidence 221 1 112233443333334556777 8899999999997421
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccEEEeeecc--------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 043682 216 NMLYAQIDAVYSAMKAMGHTDIEVRISETGW--------------PSKGDENEAGATVENAELYNGNLLKRIQQKQGTPG 281 (360)
Q Consensus 216 n~fda~~da~~~al~k~g~~~~~vvVtETGW--------------PS~G~~~~~~aS~~na~~y~~~li~~~~s~~Gtp~ 281 (360)
|+- ..++.+ .. --+|+|+|.||+. |+.+..++-..+++-|++|.+++++.+.. .|+
T Consensus 262 nL~-~nl~di----a~--rY~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~n---vp~ 331 (403)
T COG3867 262 NLT-TNLNDI----AS--RYHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKN---VPK 331 (403)
T ss_pred HHH-hHHHHH----HH--HhcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHh---CCC
Confidence 111 112222 11 1378999999998 55553333357889999999999998873 222
Q ss_pred CCCCcceEEEEE-------------------eecCCCCCCCCCCcceeeecCCCceeeeeeecCCCC
Q 043682 282 KPSVPVDVYFFA-------------------LFNENLKPGPTSERNYGLYYPNGNPVYNIGIKGYLP 329 (360)
Q Consensus 282 rp~~~~~~y~F~-------------------~FDE~wK~g~~~E~~wGlf~~d~~~ky~l~~~~~~~ 329 (360)
. ++.-+|+.| .-.|+|+.|..++.. -||+.+|.|--.|+.-....
T Consensus 332 ~--~GlGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdNq-aLfdf~G~~LPSl~vFn~ve 395 (403)
T COG3867 332 S--NGLGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDNQ-ALFDFNGHPLPSLNVFNYVE 395 (403)
T ss_pred C--CceEEEEecccceeccCCCccccchhhccCcccccCCCccchh-hhhhccCCcCcchhhhhhhc
Confidence 1 133344433 233666665434333 68888888887777654443
No 5
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.53 E-value=8.4e-07 Score=86.48 Aligned_cols=110 Identities=25% Similarity=0.451 Sum_probs=64.2
Q ss_pred eeEEecCCCC-------C-CCCHHHH---HHHHHhCCCCeEEEccCCh-----HHHHHhhcCCCeEEEEeCchhhcccc-
Q 043682 26 VGINYGQIAN-------N-LPSPSRV---SVLLRSLNISRVKLYDTDP-----VVLSAFSNSNVDFIIGLGNEYLENMT- 88 (360)
Q Consensus 26 ~Gv~Yg~~~~-------~-~ps~~~V---~~llks~~i~~VRlY~~d~-----~vL~A~~~tgikV~lGv~n~~l~~la- 88 (360)
.||.|-|-++ + +-.++.- +.+||++|++.||+|..|| .-+++|++.||=|++.+... -.+|.
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p-~~sI~r 108 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTP-NGSINR 108 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BT-TBS--T
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCC-CccccC
Confidence 5999988765 2 3333322 2478899999999998873 57899999999999999854 11221
Q ss_pred -Cc-ccc----------------c--------cccceecCC-CCchHhHHHHHHHHHHHHHHhCCCCCceEEeecc
Q 043682 89 -DP-AKA----------------Q--------IGNEVFKGE-DTKLYSYLLPAMQTVYKTLVDLGLDKQVIVTSAH 137 (360)
Q Consensus 89 -~~-~~A----------------~--------VGNEvl~~~-~~~~~~~Lv~~m~~vr~aL~~~gl~~~I~VsT~~ 137 (360)
++ ..+ . +|||++... ....++.+-.+++.+|+-+++.++. .|||+-+-
T Consensus 109 ~~P~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVGYsa 183 (314)
T PF03198_consen 109 SDPAPSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVGYSA 183 (314)
T ss_dssp TS------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE
T ss_pred CCCcCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCceeEEc
Confidence 11 000 0 999999653 2334788899999999999999985 59998664
No 6
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.18 E-value=0.00018 Score=76.51 Aligned_cols=224 Identities=12% Similarity=0.083 Sum_probs=124.7
Q ss_pred CCHHHHH---HHHHhCCCCeEEEc--cCChHHHHHhhcCCCeEEEEeCch------------------------------
Q 043682 38 PSPSRVS---VLLRSLNISRVKLY--DTDPVVLSAFSNSNVDFIIGLGNE------------------------------ 82 (360)
Q Consensus 38 ps~~~V~---~llks~~i~~VRlY--~~d~~vL~A~~~tgikV~lGv~n~------------------------------ 82 (360)
++.+... ++||..|++.||+- -.++..+.+|.+.||-|+.=++.-
T Consensus 310 ~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (604)
T PRK10150 310 LDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQ 389 (604)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHH
Confidence 4555553 46889999999993 235789999999999888544210
Q ss_pred -----hhcccc--C---ccccc--cccceecCCCCchHhHHHHHHHHHHHHHHhCCCCCceEEeeccchhhhhccCCCCC
Q 043682 83 -----YLENMT--D---PAKAQ--IGNEVFKGEDTKLYSYLLPAMQTVYKTLVDLGLDKQVIVTSAHSLDILANSFPPSA 150 (360)
Q Consensus 83 -----~l~~la--~---~~~A~--VGNEvl~~~~~~~~~~Lv~~m~~vr~aL~~~gl~~~I~VsT~~~~~~~~~s~pPs~ 150 (360)
++..+. + ++... +|||.-... ...-..++.+.+.+++..-+ =+|+.+.... .+|..
T Consensus 390 ~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~~-----~~~~~~~~~l~~~~k~~Dpt--R~vt~~~~~~-----~~~~~ 457 (604)
T PRK10150 390 QAHLQAIRELIARDKNHPSVVMWSIANEPASRE-----QGAREYFAPLAELTRKLDPT--RPVTCVNVMF-----ATPDT 457 (604)
T ss_pred HHHHHHHHHHHHhccCCceEEEEeeccCCCccc-----hhHHHHHHHHHHHHHhhCCC--CceEEEeccc-----CCccc
Confidence 011111 1 11111 999974321 12234445555555554332 2566554211 01110
Q ss_pred cccccchhhhHHHHHhhhhhcCCCceeecCCCccccCCCCCcccccccccCCCCcccCCCccchhHHHHHHHHHHHHHHH
Q 043682 151 GSFRQDLAVYIQPILSFHSQVKSPFLINAYPYFAYKDSPNQVPLDYVLFQPNQGTTDPITNLKYDNMLYAQIDAVYSAMK 230 (360)
Q Consensus 151 ~~F~~~~~~~l~~~ldfL~~~~s~~~vNiyPff~~~~~p~~i~ldyAlf~~~~~~vd~~~~~~y~n~fda~~da~~~al~ 230 (360)
..+.+.+|+ ++.|.|+=|-.... +.+ .....++..++.. .
T Consensus 458 --------~~~~~~~Dv-------~~~N~Y~~wy~~~~------~~~---------------~~~~~~~~~~~~~----~ 497 (604)
T PRK10150 458 --------DTVSDLVDV-------LCLNRYYGWYVDSG------DLE---------------TAEKVLEKELLAW----Q 497 (604)
T ss_pred --------ccccCcccE-------EEEcccceecCCCC------CHH---------------HHHHHHHHHHHHH----H
Confidence 112345676 89998763321110 000 0112222222221 1
Q ss_pred HcCCCCccEEEeeeccCCCCC---CCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCcceEEEEEeecCCCCCCC--CC
Q 043682 231 AMGHTDIEVRISETGWPSKGD---ENEAGATVENAELYNGNLLKRIQQKQGTPGKPSVPVDVYFFALFNENLKPGP--TS 305 (360)
Q Consensus 231 k~g~~~~~vvVtETGWPS~G~---~~~~~aS~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE~wK~g~--~~ 305 (360)
+. + +||++++|.|+.+.-+ .+...-|.+.|..|++...+.+.+ +|. -+-.|+..+||-....|. .-
T Consensus 498 ~~-~-~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~-~~G~~iW~~~D~~~~~g~~~~~ 568 (604)
T PRK10150 498 EK-L-HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPA-VVGEQVWNFADFATSQGILRVG 568 (604)
T ss_pred Hh-c-CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCc-eEEEEEEeeeccCCCCCCcccC
Confidence 22 3 8999999999866421 111235789999999888777653 333 567899999995554321 12
Q ss_pred CcceeeecCCCceeeee
Q 043682 306 ERNYGLYYPNGNPVYNI 322 (360)
Q Consensus 306 E~~wGlf~~d~~~ky~l 322 (360)
..+.||++.||+||-..
T Consensus 569 g~~~Gl~~~dr~~k~~~ 585 (604)
T PRK10150 569 GNKKGIFTRDRQPKSAA 585 (604)
T ss_pred CCcceeEcCCCCChHHH
Confidence 35789999999999754
No 7
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.72 E-value=0.0062 Score=57.16 Aligned_cols=192 Identities=16% Similarity=0.152 Sum_probs=107.6
Q ss_pred CHHHHHHHHHhCCCCeEEEccC-------------C-------hHHHHHhhcCCCeEEEEeCch------h---------
Q 043682 39 SPSRVSVLLRSLNISRVKLYDT-------------D-------PVVLSAFSNSNVDFIIGLGNE------Y--------- 83 (360)
Q Consensus 39 s~~~V~~llks~~i~~VRlY~~-------------d-------~~vL~A~~~tgikV~lGv~n~------~--------- 83 (360)
..++..+.+++.|++.|||.-. + ..+++++++.||+|+|.+... +
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~w~~~~~~~~~~~~~ 101 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPGWANGGDGYGNNDTA 101 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTTCSSSTSTTTTHHHH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccccccchhh
Confidence 7788888999999999999721 1 358888999999999988763 0
Q ss_pred ---hcc----ccC-----cc--ccccccceecCCCC-c----hHhHHHHHHHHHHHHHHhCCCCCceEEeeccchhhhhc
Q 043682 84 ---LEN----MTD-----PA--KAQIGNEVFKGEDT-K----LYSYLLPAMQTVYKTLVDLGLDKQVIVTSAHSLDILAN 144 (360)
Q Consensus 84 ---l~~----la~-----~~--~A~VGNEvl~~~~~-~----~~~~Lv~~m~~vr~aL~~~gl~~~I~VsT~~~~~~~~~ 144 (360)
... ++. .. ..++.||+...... . ....+.+.++.+.+++++.+-+..|-|+... |..
T Consensus 102 ~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~~~----~~~ 177 (281)
T PF00150_consen 102 QAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGGGG----WGA 177 (281)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEEHH----HHT
T ss_pred HHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCCCc----ccc
Confidence 011 110 00 01189999865332 1 1367889999999999999876434444322 221
Q ss_pred cCCCCCcccccchhhhHHHHHhhhhhcCCCceeecCCCccccCCCCCcccccccccCCCCcccCCCccchhHHHHHHHHH
Q 043682 145 SFPPSAGSFRQDLAVYIQPILSFHSQVKSPFLINAYPYFAYKDSPNQVPLDYVLFQPNQGTTDPITNLKYDNMLYAQIDA 224 (360)
Q Consensus 145 s~pPs~~~F~~~~~~~l~~~ldfL~~~~s~~~vNiyPff~~~~~p~~i~ldyAlf~~~~~~vd~~~~~~y~n~fda~~da 224 (360)
.. ...... .--....+..+.+|.|+.+........ ....-.+.....++.
T Consensus 178 ~~-----------~~~~~~-~P~~~~~~~~~~~H~Y~~~~~~~~~~~------------------~~~~~~~~~~~~~~~ 227 (281)
T PF00150_consen 178 DP-----------DGAAAD-NPNDADNNDVYSFHFYDPYDFSDQWNP------------------GNWGDASALESSFRA 227 (281)
T ss_dssp BH-----------HHHHHH-STTTTTTSEEEEEEEETTTCHHTTTST------------------CSHHHHHHHHHHHHH
T ss_pred cc-----------chhhhc-CcccccCceeEEeeEeCCCCcCCcccc------------------ccchhhhHHHHHHHH
Confidence 00 000000 000013445577788876654321100 001112333444555
Q ss_pred HHHHHHHcCCCCccEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 043682 225 VYSAMKAMGHTDIEVRISETGWPSKGDENEAGATVENAELYNGNLLKRIQQ 275 (360)
Q Consensus 225 ~~~al~k~g~~~~~vvVtETGWPS~G~~~~~~aS~~na~~y~~~li~~~~s 275 (360)
....+.+. ++||+|+|.|+++.++. ....+.+.++..+.+
T Consensus 228 ~~~~~~~~---g~pv~~gE~G~~~~~~~--------~~~~~~~~~~~~~~~ 267 (281)
T PF00150_consen 228 ALNWAKKN---GKPVVVGEFGWSNNDGN--------GSTDYADAWLDYLEQ 267 (281)
T ss_dssp HHHHHHHT---TSEEEEEEEESSTTTSC--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHc---CCeEEEeCcCCcCCCCC--------cCHHHHHHHHHHHHH
Confidence 54445443 67999999999965532 333444445555553
No 8
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.46 E-value=0.065 Score=50.62 Aligned_cols=67 Identities=18% Similarity=0.230 Sum_probs=47.0
Q ss_pred ccEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCcceEEEEEeecCCCCCCCCCCcceeeecCCC
Q 043682 237 IEVRISETGWPSKGDENEAGATVENAELYNGNLLKRIQQKQGTPGKPSVPVDVYFFALFNENLKPGPTSERNYGLYYPNG 316 (360)
Q Consensus 237 ~~vvVtETGWPS~G~~~~~~aS~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE~wK~g~~~E~~wGlf~~d~ 316 (360)
|||+|||.|+...+ ...+.++++.|++..+..+.+. |. --.++||...+ .+. .....-.|++.+|
T Consensus 166 kPIWITEf~~~~~~----~~~~~~~~~~fl~~~~~~ld~~------~~-VeryawF~~~~-~~~---~~~~~~~L~~~~G 230 (239)
T PF11790_consen 166 KPIWITEFGCWNGG----SQGSDEQQASFLRQALPWLDSQ------PY-VERYAWFGFMN-DGS---GVNPNSALLDADG 230 (239)
T ss_pred CCEEEEeecccCCC----CCCCHHHHHHHHHHHHHHHhcC------CC-eeEEEeccccc-ccC---CCccccccccCCC
Confidence 99999999988733 2588899999999999998742 12 34677888332 222 3455667777776
Q ss_pred ce
Q 043682 317 NP 318 (360)
Q Consensus 317 ~~ 318 (360)
++
T Consensus 231 ~l 232 (239)
T PF11790_consen 231 SL 232 (239)
T ss_pred Cc
Confidence 43
No 9
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=95.39 E-value=0.3 Score=47.20 Aligned_cols=57 Identities=9% Similarity=0.060 Sum_probs=37.1
Q ss_pred ceeEEecCCCCC---CCCHHHHHH---HHHhCCCCeEEEcc--CChHHHHHhhcCCCeEEEEeCc
Q 043682 25 GVGINYGQIANN---LPSPSRVSV---LLRSLNISRVKLYD--TDPVVLSAFSNSNVDFIIGLGN 81 (360)
Q Consensus 25 ~~Gv~Yg~~~~~---~ps~~~V~~---llks~~i~~VRlY~--~d~~vL~A~~~tgikV~lGv~n 81 (360)
..|+|+...... .++.+++.+ ++|+.|++.||+.. .++..+.++.+.||-|+..++.
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccc
Confidence 469998865332 456666654 57889999999963 3589999999999999988765
No 10
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=94.14 E-value=0.21 Score=47.44 Aligned_cols=77 Identities=14% Similarity=0.169 Sum_probs=52.2
Q ss_pred HHHHcCCCCccEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCcceEEEEEeecC-CCCCCCCCC
Q 043682 228 AMKAMGHTDIEVRISETGWPSKGDENEAGATVENAELYNGNLLKRIQQKQGTPGKPSVPVDVYFFALFNE-NLKPGPTSE 306 (360)
Q Consensus 228 al~k~g~~~~~vvVtETGWPS~G~~~~~~aS~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE-~wK~g~~~E 306 (360)
.|++.+-.++||.|||.+-|..+ +.+.|+.++++++..+.+. | . -...++..+.|. .|..+
T Consensus 174 ~l~~~~~~g~pi~iTE~dv~~~~-------~~~~qA~~~~~~l~~~~~~---p---~-v~gi~~Wg~~d~~~W~~~---- 235 (254)
T smart00633 174 ALDRFASLGLEIQITELDISGYP-------NPQAQAADYEEVFKACLAH---P---A-VTGVTVWGVTDKYSWLDG---- 235 (254)
T ss_pred HHHHHHHcCCceEEEEeecCCCC-------cHHHHHHHHHHHHHHHHcC---C---C-eeEEEEeCCccCCcccCC----
Confidence 33333334899999999998753 3388999999999988752 2 1 234555555553 45432
Q ss_pred cceeeecCCCceeeee
Q 043682 307 RNYGLYYPNGNPVYNI 322 (360)
Q Consensus 307 ~~wGlf~~d~~~ky~l 322 (360)
.+-|||+.|++||-..
T Consensus 236 ~~~~L~d~~~~~kpa~ 251 (254)
T smart00633 236 GAPLLFDANYQPKPAY 251 (254)
T ss_pred CCceeECCCCCCChhh
Confidence 4679999999988543
No 11
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=88.41 E-value=0.29 Score=50.53 Aligned_cols=74 Identities=18% Similarity=0.316 Sum_probs=38.9
Q ss_pred CCCccEEEeeeccCCCCCCCCCCCCHHHHHHHHHH----HHHHHHhhcCCCCCCCCcceEEEEEeecCCCCCCCCCCcce
Q 043682 234 HTDIEVRISETGWPSKGDENEAGATVENAELYNGN----LLKRIQQKQGTPGKPSVPVDVYFFALFNENLKPGPTSERNY 309 (360)
Q Consensus 234 ~~~~~vvVtETGWPS~G~~~~~~aS~~na~~y~~~----li~~~~s~~Gtp~rp~~~~~~y~F~~FDE~wK~g~~~E~~w 309 (360)
|+++||+|||.|++.........---..--.|++. +.+.+. .|-+ -.-+|..++.| ++--+.+..+.|
T Consensus 353 Y~~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~--dGv~-----V~GY~~WSl~D-n~Ew~~Gy~~rf 424 (455)
T PF00232_consen 353 YGNPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDHLNQVLKAIE--DGVN-----VRGYFAWSLLD-NFEWAEGYKKRF 424 (455)
T ss_dssp HTSSEEEEEEE---EETTCTTSHBSHHHHHHHHHHHHHHHHHHHH--TT-E-----EEEEEEETSB----BGGGGGGSE-
T ss_pred cCCCcEEEecccccccccccccCcCcHHHHHHHHHHHHHHHhhhc--cCCC-----eeeEeeecccc-ccccccCccCcc
Confidence 77899999999998876432211222333344444 444443 3322 23467777777 443334688999
Q ss_pred eeecCC
Q 043682 310 GLYYPN 315 (360)
Q Consensus 310 Glf~~d 315 (360)
||++.|
T Consensus 425 Gl~~VD 430 (455)
T PF00232_consen 425 GLVYVD 430 (455)
T ss_dssp -SEEEE
T ss_pred CceEEc
Confidence 999998
No 12
>PRK09936 hypothetical protein; Provisional
Probab=79.54 E-value=6.7 Score=38.48 Aligned_cols=58 Identities=21% Similarity=0.280 Sum_probs=42.7
Q ss_pred ceeEEecCCCCC-CCCHHHHHHH---HHhCCCCeEEEc-----cCC--------hHHHHHhhcCCCeEEEEeCch
Q 043682 25 GVGINYGQIANN-LPSPSRVSVL---LRSLNISRVKLY-----DTD--------PVVLSAFSNSNVDFIIGLGNE 82 (360)
Q Consensus 25 ~~Gv~Yg~~~~~-~ps~~~V~~l---lks~~i~~VRlY-----~~d--------~~vL~A~~~tgikV~lGv~n~ 82 (360)
..|+=|-|...+ --++++-.++ ++..|++.+=+= +.| .+.+.++.+.||+|.||++-|
T Consensus 21 ~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~D 95 (296)
T PRK09936 21 MKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYAD 95 (296)
T ss_pred cccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCC
Confidence 356779999877 5677777665 456788666442 223 468888899999999999965
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=75.42 E-value=7.5 Score=39.97 Aligned_cols=78 Identities=13% Similarity=0.210 Sum_probs=44.6
Q ss_pred CCCccEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHh--hcCCCCCCCCcceEEEEEeecCCCCCCCCCCcceee
Q 043682 234 HTDIEVRISETGWPSKGDENEAGATVENAELYNGNLLKRIQQ--KQGTPGKPSVPVDVYFFALFNENLKPGPTSERNYGL 311 (360)
Q Consensus 234 ~~~~~vvVtETGWPS~G~~~~~~aS~~na~~y~~~li~~~~s--~~Gtp~rp~~~~~~y~F~~FDE~wK~g~~~E~~wGl 311 (360)
+.+.||+|||.|+..........-.-+.-..|++.-++.+.. ..|-+ -.-++..++.| ++--..+..+.|||
T Consensus 335 Y~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~-----v~GY~~Wsl~D-n~ew~~gy~~rfGl 408 (427)
T TIGR03356 335 YPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEEGVD-----VRGYFVWSLLD-NFEWAEGYSKRFGL 408 (427)
T ss_pred cCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHCCCC-----EEEEEeccccc-ccchhcccccccce
Confidence 555689999999975432110011122344455555544332 13433 23467778887 33322358999999
Q ss_pred ecCCCc
Q 043682 312 YYPNGN 317 (360)
Q Consensus 312 f~~d~~ 317 (360)
++.|++
T Consensus 409 ~~VD~~ 414 (427)
T TIGR03356 409 VHVDYE 414 (427)
T ss_pred EEECCC
Confidence 999865
No 14
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=71.94 E-value=13 Score=36.92 Aligned_cols=153 Identities=15% Similarity=0.250 Sum_probs=58.8
Q ss_pred HHHHHhhcCCCeEEEEeCc-----------------h-hhcccc----C----ccccccccceecCC---CCchHhHHHH
Q 043682 63 VVLSAFSNSNVDFIIGLGN-----------------E-YLENMT----D----PAKAQIGNEVFKGE---DTKLYSYLLP 113 (360)
Q Consensus 63 ~vL~A~~~tgikV~lGv~n-----------------~-~l~~la----~----~~~A~VGNEvl~~~---~~~~~~~Lv~ 113 (360)
.+-+-++++|.+|+.|+-- . .-..+. + ....+.|||.-..+ ..+ +.++..
T Consensus 113 ~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~-a~qyak 191 (319)
T PF03662_consen 113 ELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVS-AEQYAK 191 (319)
T ss_dssp HHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT---HHHHHH
T ss_pred HHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccC-HHHHHH
Confidence 4555566899999999941 1 111111 1 12234999975322 223 678888
Q ss_pred HHHHHHHHHHhC---CCCCceEEeeccchhhhhccCCCCCcccccchhhhHHHHHhhhhhc----CCCceeecCCCcccc
Q 043682 114 AMQTVYKTLVDL---GLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVYIQPILSFHSQV----KSPFLINAYPYFAYK 186 (360)
Q Consensus 114 ~m~~vr~aL~~~---gl~~~I~VsT~~~~~~~~~s~pPs~~~F~~~~~~~l~~~ldfL~~~----~s~~~vNiyPff~~~ 186 (360)
...++|+.|++. .+.+ -.|.-+... |..+ .++ +||+.. -+.+.-|.|+ +...
T Consensus 192 D~~~Lr~il~~iy~~~~~~-P~v~gP~~~-------------~d~~---w~~---~FL~~~g~~~vD~vT~H~Y~-lg~g 250 (319)
T PF03662_consen 192 DFIQLRKILNEIYKNALPG-PLVVGPGGF-------------FDAD---WLK---EFLKASGPGVVDAVTWHHYN-LGSG 250 (319)
T ss_dssp HH---HHHHHHHHHH-TT----EEEEEES-------------S-GG---GHH---HHHHHTTTT--SEEEEEEEE-E--T
T ss_pred HHHHHHHHHHHHHhcCCCC-CeEECCCCC-------------CCHH---HHH---HHHHhcCCCccCEEEEEecC-CCCC
Confidence 888888888763 1111 124433321 1111 122 233332 2347778885 2322
Q ss_pred CCCCCcccccccccCCCCcccCCCccchhHHHHHHHHHHHHHHHHcCCCCccEEEeeeccCCCCCC
Q 043682 187 DSPNQVPLDYVLFQPNQGTTDPITNLKYDNMLYAQIDAVYSAMKAMGHTDIEVRISETGWPSKGDE 252 (360)
Q Consensus 187 ~~p~~i~ldyAlf~~~~~~vd~~~~~~y~n~fda~~da~~~al~k~g~~~~~vvVtETGWPS~G~~ 252 (360)
.++. . ++. ..++ .|-+.+..++..+...+++. .|+++++++|||=...|+.
T Consensus 251 ~d~~-l-~~~--------~l~p----~~Ld~~~~~~~~~~~~v~~~-~p~~~~WlGEtg~Ay~gG~ 301 (319)
T PF03662_consen 251 RDPA-L-IED--------FLNP----SYLDTLADTFQKLQQVVQEY-GPGKPVWLGETGSAYNGGA 301 (319)
T ss_dssp T-TT---HHH--------HTS------HHHHHHHHHHHHH-----H-HH---EEEEEEEEESTT--
T ss_pred chHH-H-HHH--------hcCh----hhhhHHHHHHHHHhhhhccc-CCCCCeEEeCcccccCCCC
Confidence 2110 0 010 1111 23334444444444444444 4789999999997766653
No 15
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=71.88 E-value=9 Score=39.91 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=43.8
Q ss_pred CCC-ccEEEeeeccCCCCCCC-CCCCCHHHHHHHHHHHHHHHHh--hcCCCCCCCCcceEEEEEeecC-CCCCCCCCCcc
Q 043682 234 HTD-IEVRISETGWPSKGDEN-EAGATVENAELYNGNLLKRIQQ--KQGTPGKPSVPVDVYFFALFNE-NLKPGPTSERN 308 (360)
Q Consensus 234 ~~~-~~vvVtETGWPS~G~~~-~~~aS~~na~~y~~~li~~~~s--~~Gtp~rp~~~~~~y~F~~FDE-~wK~g~~~E~~ 308 (360)
+++ .||+|||.|+....... +....-..-..|++.-++.+.. ..|-+ -.-+|.-++.|- .|.. +.++.
T Consensus 365 Y~~~~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~-----v~GY~~WSl~DnfEW~~--Gy~~R 437 (469)
T PRK13511 365 YPNYKKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGAN-----VKGYFIWSLMDVFSWSN--GYEKR 437 (469)
T ss_pred cCCCCCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCC-----EEEEeecccccccchhc--CccCc
Confidence 555 58999999997543210 0011122333455544443332 13433 235777788873 3443 58999
Q ss_pred eeeecCCCc
Q 043682 309 YGLYYPNGN 317 (360)
Q Consensus 309 wGlf~~d~~ 317 (360)
|||++.|.+
T Consensus 438 fGl~~VD~~ 446 (469)
T PRK13511 438 YGLFYVDFE 446 (469)
T ss_pred cceEEECCC
Confidence 999998865
No 16
>PLN02998 beta-glucosidase
Probab=65.73 E-value=11 Score=39.55 Aligned_cols=76 Identities=18% Similarity=0.223 Sum_probs=43.6
Q ss_pred CCCccEEEeeeccCCCCCC-CCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCcceEEEEEeecCCCCCCCCCCcceeee
Q 043682 234 HTDIEVRISETGWPSKGDE-NEAGATVENAELYNGNLLKRIQQKQGTPGKPSVPVDVYFFALFNENLKPGPTSERNYGLY 312 (360)
Q Consensus 234 ~~~~~vvVtETGWPS~G~~-~~~~aS~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE~wK~g~~~E~~wGlf 312 (360)
+++.||+|||-|+....+. -.-.-=++.-+.+++.+.+.+. .|-+ -.-+|.-++.| ++--..+.++.|||+
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~--dGv~-----V~GY~~WSl~D-nfEW~~Gy~~RfGLv 461 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLR--KGSD-----VKGYFQWSLMD-VFELFGGYERSFGLL 461 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCC-----EEEEeeccchh-hhchhccccCccceE
Confidence 5555899999999865310 0001122334444444444443 3432 23477777877 333223589999999
Q ss_pred cCCCc
Q 043682 313 YPNGN 317 (360)
Q Consensus 313 ~~d~~ 317 (360)
+.|.+
T Consensus 462 ~VD~~ 466 (497)
T PLN02998 462 YVDFK 466 (497)
T ss_pred EECCC
Confidence 98754
No 17
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=64.16 E-value=25 Score=25.94 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHhCCCCeEEEccCC-----hHHHHHhhcCCCeEEEEeCc
Q 043682 37 LPSPSRVSVLLRSLNISRVKLYDTD-----PVVLSAFSNSNVDFIIGLGN 81 (360)
Q Consensus 37 ~ps~~~V~~llks~~i~~VRlY~~d-----~~vL~A~~~tgikV~lGv~n 81 (360)
.-+++++++..+.+|++.|=+=|-+ +...+.+++.||+++.|+..
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 4568899999999999988877665 45667777899999999853
No 18
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=63.44 E-value=8 Score=34.65 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHhCCCCeEEEccCChHHHHHhhcCCCeEEEEe
Q 043682 38 PSPSRVSVLLRSLNISRVKLYDTDPVVLSAFSNSNVDFIIGL 79 (360)
Q Consensus 38 ps~~~V~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~lGv 79 (360)
.+..--++.|+.+|+++||+.+.+|.=+.++.+.||+|.==+
T Consensus 126 R~ygigaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~v 167 (169)
T PF00925_consen 126 RDYGIGAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERV 167 (169)
T ss_dssp --THHHHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE
T ss_pred ccHHHHHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEe
Confidence 334444678899999999999999999999999999986433
No 19
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=63.27 E-value=1.3e+02 Score=30.49 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=34.3
Q ss_pred HhHHHHHHHHHHHHHHhCCCCCceEEeeccchhhhhccCCCCCcccccchhhhHHHHHhhhhhcCCCceeecCCCccc
Q 043682 108 YSYLLPAMQTVYKTLVDLGLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVYIQPILSFHSQVKSPFLINAYPYFAY 185 (360)
Q Consensus 108 ~~~Lv~~m~~vr~aL~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~F~~~~~~~l~~~ldfL~~~~s~~~vNiyPff~~ 185 (360)
..+...+++.+|+.. .| +.+++..-. .+| .+-.+.+.+.++|+.+.+ +-.+++|||--.
T Consensus 272 ~~~~~~~v~~l~~~~--~g----i~i~~~~Iv-----G~P-------gET~ed~~~tl~~i~~~~-~~~~~~~~~sp~ 330 (414)
T TIGR01579 272 RDDFLKLVNKLRSVR--PD----YAFGTDIIV-----GFP-------GESEEDFQETLRMVKEIE-FSHLHIFPYSAR 330 (414)
T ss_pred HHHHHHHHHHHHHhC--CC----CeeeeeEEE-----ECC-------CCCHHHHHHHHHHHHhCC-CCEEEeeecCCC
Confidence 567777777777643 22 445554321 243 122355667788887765 446777776554
No 20
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=61.24 E-value=11 Score=37.61 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCCeEEEccC------------C----hHHHHHhhcCCCeEEEEeCc
Q 043682 41 SRVSVLLRSLNISRVKLYDT------------D----PVVLSAFSNSNVDFIIGLGN 81 (360)
Q Consensus 41 ~~V~~llks~~i~~VRlY~~------------d----~~vL~A~~~tgikV~lGv~n 81 (360)
++-++++|..|++.|||-.. | ..++..+++.||+|+|+++.
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~ 69 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPT 69 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECT
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecc
Confidence 44456778889999998421 1 46888889999999999973
No 21
>PLN02849 beta-glucosidase
Probab=61.16 E-value=18 Score=38.10 Aligned_cols=76 Identities=24% Similarity=0.311 Sum_probs=43.8
Q ss_pred CCCccEEEeeeccCCCCCCCCC---CCCHHHHHHHHHHHHHHHHhhcCCCCCCCCcceEEEEEeecCCCCCCCCCCccee
Q 043682 234 HTDIEVRISETGWPSKGDENEA---GATVENAELYNGNLLKRIQQKQGTPGKPSVPVDVYFFALFNENLKPGPTSERNYG 310 (360)
Q Consensus 234 ~~~~~vvVtETGWPS~G~~~~~---~aS~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE~wK~g~~~E~~wG 310 (360)
|++.||+|||-|++......+. .-=++.-+.+++.+.+.+. .|-+ -.-+|.-++.| ++--..+.++.||
T Consensus 383 Y~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~--dGv~-----V~GY~~WSl~D-nfEW~~Gy~~RfG 454 (503)
T PLN02849 383 YGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVR--NGSD-----TRGYFVWSFMD-LYELLKGYEFSFG 454 (503)
T ss_pred cCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCC-----EEEEeeccchh-hhchhccccCccc
Confidence 5556899999999865421111 0112233334444444443 3432 23477777777 4333336899999
Q ss_pred eecCCCc
Q 043682 311 LYYPNGN 317 (360)
Q Consensus 311 lf~~d~~ 317 (360)
|++.|.+
T Consensus 455 Li~VD~~ 461 (503)
T PLN02849 455 LYSVNFS 461 (503)
T ss_pred eEEECCC
Confidence 9998764
No 22
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=59.69 E-value=49 Score=33.15 Aligned_cols=115 Identities=16% Similarity=0.175 Sum_probs=62.5
Q ss_pred CCCeEEEcc-CChHHHHHhhcCCCeEEEEeCchhhccccCccc----c---------------ccccceecCCCCchHhH
Q 043682 51 NISRVKLYD-TDPVVLSAFSNSNVDFIIGLGNEYLENMTDPAK----A---------------QIGNEVFKGEDTKLYSY 110 (360)
Q Consensus 51 ~i~~VRlY~-~d~~vL~A~~~tgikV~lGv~n~~l~~la~~~~----A---------------~VGNEvl~~~~~~~~~~ 110 (360)
.+++|-+|+ .|++++..+.+.|++|++..-.. .+.++++.. + ++==|-....+..-...
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~ 133 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYA 133 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHH
Confidence 378888886 46899999999999998854211 111221110 0 01111111101111356
Q ss_pred HHHHHHHHHHHHHhCCCCCceEEeeccchhhhhccCCCCCcccc-cchhhhHHHHHhhhhhcCCCceeecCCCc
Q 043682 111 LLPAMQTVYKTLVDLGLDKQVIVTSAHSLDILANSFPPSAGSFR-QDLAVYIQPILSFHSQVKSPFLINAYPYF 183 (360)
Q Consensus 111 Lv~~m~~vr~aL~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~F~-~~~~~~l~~~ldfL~~~~s~~~vNiyPff 183 (360)
+...|+++|++|++.+..- .+|.+..+. |+....+ -+ .+.|.+.+|| +.+-.|=|.
T Consensus 134 ~t~llkelr~~l~~~~~~~--~Lsvav~~~-------p~~~~~~~yd-~~~l~~~vD~-------v~lMtYD~h 190 (358)
T cd02875 134 LTELVKETTKAFKKENPGY--QISFDVAWS-------PSCIDKRCYD-YTGIADASDF-------LVVMDYDEQ 190 (358)
T ss_pred HHHHHHHHHHHHhhcCCCc--EEEEEEecC-------cccccccccC-HHHHHhhCCE-------eeEEeeccc
Confidence 8899999999999875432 344433211 1111111 11 2567788888 777777654
No 23
>PLN02814 beta-glucosidase
Probab=57.63 E-value=20 Score=37.83 Aligned_cols=75 Identities=16% Similarity=0.251 Sum_probs=43.1
Q ss_pred CCCccEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHh--hcCCCCCCCCcceEEEEEeecCCCCCCCCCCcceee
Q 043682 234 HTDIEVRISETGWPSKGDENEAGATVENAELYNGNLLKRIQQ--KQGTPGKPSVPVDVYFFALFNENLKPGPTSERNYGL 311 (360)
Q Consensus 234 ~~~~~vvVtETGWPS~G~~~~~~aS~~na~~y~~~li~~~~s--~~Gtp~rp~~~~~~y~F~~FDE~wK~g~~~E~~wGl 311 (360)
+++.||+|||-|+....+ +. -.-..-..|+++-+..+.. ..|-|- .-+|.-++.| ++--..+.++.|||
T Consensus 385 Y~~ppI~ITENG~~~~~~--g~-i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V-----~GY~~WSllD-nfEW~~Gy~~RfGL 455 (504)
T PLN02814 385 YNNPPIYILENGMPMKHD--ST-LQDTPRVEFIQAYIGAVLNAIKNGSDT-----RGYFVWSMID-LYELLGGYTTSFGM 455 (504)
T ss_pred cCCCCEEEECCCCCCCCC--Cc-ccCHHHHHHHHHHHHHHHHHHHcCCCE-----EEEeeccchh-hhchhccccCccce
Confidence 556689999999975431 11 1112333444444433321 134332 3477778887 33322358999999
Q ss_pred ecCCCc
Q 043682 312 YYPNGN 317 (360)
Q Consensus 312 f~~d~~ 317 (360)
++.|++
T Consensus 456 vyVD~~ 461 (504)
T PLN02814 456 YYVNFS 461 (504)
T ss_pred EEECCC
Confidence 998765
No 24
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=57.51 E-value=2.4e+02 Score=29.33 Aligned_cols=181 Identities=14% Similarity=0.160 Sum_probs=76.7
Q ss_pred cccceecC--CCCchHhHHHHHHHHHHHHHHhCCCCCceEEeeccchhhhhccCCCCCcccccchhhhHHHHHhhhhhcC
Q 043682 95 IGNEVFKG--EDTKLYSYLLPAMQTVYKTLVDLGLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVYIQPILSFHSQVK 172 (360)
Q Consensus 95 VGNEvl~~--~~~~~~~~Lv~~m~~vr~aL~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~F~~~~~~~l~~~ldfL~~~~ 172 (360)
|=||+=.. .......+-...-+.+.++|++..- .++|+-+-.. + +. ...+...++|+.+.+
T Consensus 161 iWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p--~~~vGGp~~~--~--~~-----------~~~~~~~l~~~~~~~ 223 (486)
T PF01229_consen 161 IWNEPDLKDFWWDGTPEEYFELYDATARAIKAVDP--ELKVGGPAFA--W--AY-----------DEWCEDFLEFCKGNN 223 (486)
T ss_dssp ESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-T--TSEEEEEEEE--T--T------------THHHHHHHHHHHHCT
T ss_pred eCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhCC--CCcccCcccc--c--cH-----------HHHHHHHHHHHhcCC
Confidence 77775322 1111144566777778888887653 4788876110 0 00 012233344443322
Q ss_pred ---CCceeecCCCccccCCCCCcccccccccCCCCcccCCCccchhHHHHHHHHHHHHHHHHcCCCCccEEEeeeccCCC
Q 043682 173 ---SPFLINAYPYFAYKDSPNQVPLDYVLFQPNQGTTDPITNLKYDNMLYAQIDAVYSAMKAMGHTDIEVRISETGWPSK 249 (360)
Q Consensus 173 ---s~~~vNiyPff~~~~~p~~i~ldyAlf~~~~~~vd~~~~~~y~n~fda~~da~~~al~k~g~~~~~vvVtETGWPS~ 249 (360)
|.+..|.||.=......... + ..+. ....++. ++..+...+...+.|++++.+|| |.+.
T Consensus 224 ~~~DfiS~H~y~~~~~~~~~~~~---~-------~~~~-----~~~~~~~-~~~~~~~~~~~e~~p~~~~~~tE--~n~~ 285 (486)
T PF01229_consen 224 CPLDFISFHSYGTDSAEDINENM---Y-------ERIE-----DSRRLFP-ELKETRPIINDEADPNLPLYITE--WNAS 285 (486)
T ss_dssp ---SEEEEEEE-BESESE-SS-E---E-------EEB-------HHHHHH-HHHHHHHHHHTSSSTT--EEEEE--EES-
T ss_pred CCCCEEEEEecccccccccchhH---H-------hhhh-----hHHHHHH-HHHHHHHHHhhccCCCCceeecc--cccc
Confidence 22688888853321110000 0 0010 1112222 22223334555678999999999 8776
Q ss_pred CCCCC-CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCcceEEEE---E-eecCCCCCCCCCCcceeeecCCCceee
Q 043682 250 GDENE-AGATVENAELYNGNLLKRIQQKQGTPGKPSVPVDVYFF---A-LFNENLKPGPTSERNYGLYYPNGNPVY 320 (360)
Q Consensus 250 G~~~~-~~aS~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F---~-~FDE~wK~g~~~E~~wGlf~~d~~~ky 320 (360)
-.+.. -.-|.-+|+...++++..... .++.|-+ + .|.|+--+..-+-.-|||++.+|-+|-
T Consensus 286 ~~~~~~~~dt~~~aA~i~k~lL~~~~~----------~l~~~sywt~sD~Fee~~~~~~pf~ggfGLlt~~gI~KP 351 (486)
T PF01229_consen 286 ISPRNPQHDTCFKAAYIAKNLLSNDGA----------FLDSFSYWTFSDRFEENGTPRKPFHGGFGLLTKLGIPKP 351 (486)
T ss_dssp SSTT-GGGGSHHHHHHHHH-HHHHGGG----------T-SEEEES-SBS---TTSS-SSSSSS-S-SEECCCEE-H
T ss_pred cCCCcchhccccchhhHHHHHHHhhhh----------hhhhhhccchhhhhhccCCCCCceecchhhhhccCCCch
Confidence 54321 123445555545555554421 1233222 1 233322221234556999999986663
No 25
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=56.80 E-value=86 Score=32.25 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=32.2
Q ss_pred HhHHHHHHHHHHHHHHhCCCCCceEEeeccchhhhhccCCCCCcccccchhhhHHHHHhhhhhcCCCceeecCCCc
Q 043682 108 YSYLLPAMQTVYKTLVDLGLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVYIQPILSFHSQVKSPFLINAYPYF 183 (360)
Q Consensus 108 ~~~Lv~~m~~vr~aL~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~F~~~~~~~l~~~ldfL~~~~s~~~vNiyPff 183 (360)
.++.+..++.+|++. . .+.++|..-. .+| .+-.+.+.+.++|+.+.+ +-.+++|+|-
T Consensus 271 ~~~~~~~v~~lr~~~----~--~i~i~~d~Iv-----G~P-------gEt~ed~~~tl~~i~~l~-~~~i~~f~ys 327 (440)
T PRK14334 271 REKYLERIAEIREAL----P--DVVLSTDIIV-----GFP-------GETEEDFQETLSLYDEVG-YDSAYMFIYS 327 (440)
T ss_pred HHHHHHHHHHHHHhC----C--CcEEEEeEEE-----ECC-------CCCHHHHHHHHHHHHhcC-CCEeeeeEee
Confidence 567788888877653 2 2445554321 243 112345566788877654 4456777643
No 26
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=54.99 E-value=80 Score=31.52 Aligned_cols=28 Identities=7% Similarity=-0.057 Sum_probs=20.1
Q ss_pred HhHHHHHHHHHHHHHHhCCCCCceEEeecc
Q 043682 108 YSYLLPAMQTVYKTLVDLGLDKQVIVTSAH 137 (360)
Q Consensus 108 ~~~Lv~~m~~vr~aL~~~gl~~~I~VsT~~ 137 (360)
...+..+++.+++.+++..- +.+|+|-.
T Consensus 208 ~~~~~~~~~~~~~~ir~~~p--~~~vt~n~ 235 (374)
T PF02449_consen 208 SDRVAEFFRWQADIIREYDP--DHPVTTNF 235 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHST--T-EEE-EE
T ss_pred HHHHHHHHHHHHHHHHHhCC--CceEEeCc
Confidence 55778889999999998863 46888754
No 27
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=50.60 E-value=37 Score=35.41 Aligned_cols=76 Identities=17% Similarity=0.301 Sum_probs=42.3
Q ss_pred CCC-ccEEEeeeccCCCCCC-CCC---CCCHHHHHHHHHHHHHHHHhhcCCCCCCCCcceEEEEEeecCCCCCCCCCCcc
Q 043682 234 HTD-IEVRISETGWPSKGDE-NEA---GATVENAELYNGNLLKRIQQKQGTPGKPSVPVDVYFFALFNENLKPGPTSERN 308 (360)
Q Consensus 234 ~~~-~~vvVtETGWPS~G~~-~~~---~aS~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE~wK~g~~~E~~ 308 (360)
+++ .||+|||-|....... .+. .-=++.-+.+++.+.+.+. .|-+ -.-+|.-++.| ++--..+..+.
T Consensus 364 Y~~~ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~--dGv~-----v~GY~~WSl~D-n~Ew~~Gy~~R 435 (467)
T TIGR01233 364 YPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIA--DGAN-----VKGYFIWSLMD-VFSWSNGYEKR 435 (467)
T ss_pred cCCCCCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHH--cCCC-----EEEEeeccchh-hhchhccccCc
Confidence 554 4799999999865421 111 0122233344444444443 3432 12455666666 44433468999
Q ss_pred eeeecCCCc
Q 043682 309 YGLYYPNGN 317 (360)
Q Consensus 309 wGlf~~d~~ 317 (360)
|||++.|++
T Consensus 436 fGLv~VD~~ 444 (467)
T TIGR01233 436 YGLFYVDFD 444 (467)
T ss_pred cceEEECCC
Confidence 999998865
No 28
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=49.57 E-value=1.4e+02 Score=31.50 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=32.2
Q ss_pred HhHHHHHHHHHHHHHHhCCCCCceEEeeccchhhhhccCCCCCcccccchhhhHHHHHhhhhhcCCCceeecCCC
Q 043682 108 YSYLLPAMQTVYKTLVDLGLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVYIQPILSFHSQVKSPFLINAYPY 182 (360)
Q Consensus 108 ~~~Lv~~m~~vr~aL~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~F~~~~~~~l~~~ldfL~~~~s~~~vNiyPf 182 (360)
..+...+++.+|++.. .+.|+|..- . .|| .|-.+.+.+.++|+.+.+ +-.+++|+|
T Consensus 291 ~~~~~~~v~~lr~~~~------~i~i~~~~I----v-GfP-------gET~edf~~Tl~~i~~~~-~~~~~~f~~ 346 (502)
T PRK14326 291 SERFLGILEKVRAAMP------DAAITTDII----V-GFP-------GETEEDFQATLDVVREAR-FSSAFTFQY 346 (502)
T ss_pred HHHHHHHHHHHHHhCC------CCeEEEEEE----E-ECC-------CCCHHHHHHHHHHHHHcC-CCEEEEEee
Confidence 5677788887776532 256666432 1 244 222356677788887654 234566664
No 29
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=48.98 E-value=27 Score=32.08 Aligned_cols=33 Identities=18% Similarity=0.564 Sum_probs=29.8
Q ss_pred HHHHHhCCCCeEEEccCChHHHHHhhcCCCeEE
Q 043682 44 SVLLRSLNISRVKLYDTDPVVLSAFSNSNVDFI 76 (360)
Q Consensus 44 ~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~ 76 (360)
++.|+.+||++||+.+..+.=..++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 678899999999999998877889999999997
No 30
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=48.74 E-value=28 Score=31.84 Aligned_cols=33 Identities=15% Similarity=0.498 Sum_probs=29.6
Q ss_pred HHHHHhCCCCeEEEccCChHHHHHhhcCCCeEE
Q 043682 44 SVLLRSLNISRVKLYDTDPVVLSAFSNSNVDFI 76 (360)
Q Consensus 44 ~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~ 76 (360)
.+.|+.+|+++||+.+..+.=+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 678899999999999998877889999999987
No 31
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=46.86 E-value=30 Score=34.11 Aligned_cols=89 Identities=13% Similarity=0.263 Sum_probs=49.5
Q ss_pred HHHHHHHcCCCCccEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCcceEEE-EEeecC-CCCCC
Q 043682 225 VYSAMKAMGHTDIEVRISETGWPSKGDENEAGATVENAELYNGNLLKRIQQKQGTPGKPSVPVDVYF-FALFNE-NLKPG 302 (360)
Q Consensus 225 ~~~al~k~g~~~~~vvVtETGWPS~G~~~~~~aS~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~-F~~FDE-~wK~g 302 (360)
+...|++..--+++|.|||--=........ ....+.|+.++++++..+.+. | |+ .+..+. ..+.|. .|...
T Consensus 222 i~~~l~~~~~~Gl~i~ITElDv~~~~~~~~-~~~~~~qA~~~~~~~~~~~~~---~--~~-~v~git~Wg~~D~~sW~~~ 294 (320)
T PF00331_consen 222 IWNALDRFASLGLPIHITELDVRDDDNPPD-AEEEEAQAEYYRDFLTACFSH---P--PA-AVEGITWWGFTDGYSWRPD 294 (320)
T ss_dssp HHHHHHHHHTTTSEEEEEEEEEESSSTTSC-HHHHHHHHHHHHHHHHHHHHT---T--HC-TEEEEEESSSBTTGSTTGG
T ss_pred HHHHHHHHHHcCCceEEEeeeecCCCCCcc-hHHHHHHHHHHHHHHHHHHhC---C--cc-CCCEEEEECCCCCCcccCC
Confidence 334444444457999999986444432211 345778899999999988752 1 01 234443 344443 25542
Q ss_pred CCCCcceeeecCCCceeee
Q 043682 303 PTSERNYGLYYPNGNPVYN 321 (360)
Q Consensus 303 ~~~E~~wGlf~~d~~~ky~ 321 (360)
.. -.+=+||+.|.+||-.
T Consensus 295 ~~-~~~~~lfd~~~~~Kpa 312 (320)
T PF00331_consen 295 TP-PDRPLLFDEDYQPKPA 312 (320)
T ss_dssp HS-EG--SSB-TTSBB-HH
T ss_pred CC-CCCCeeECCCcCCCHH
Confidence 01 2334799999999853
No 32
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=46.36 E-value=50 Score=34.54 Aligned_cols=75 Identities=12% Similarity=0.281 Sum_probs=42.3
Q ss_pred CccEEEeeeccCCCCCC--CCCCCCHHHHHHHHHHHHHHHHh---hcCCCCCCCCcceEEEEEeecCCCCCCCC-CCcce
Q 043682 236 DIEVRISETGWPSKGDE--NEAGATVENAELYNGNLLKRIQQ---KQGTPGKPSVPVDVYFFALFNENLKPGPT-SERNY 309 (360)
Q Consensus 236 ~~~vvVtETGWPS~G~~--~~~~aS~~na~~y~~~li~~~~s---~~Gtp~rp~~~~~~y~F~~FDE~wK~g~~-~E~~w 309 (360)
++||+|||-|....... ++. -.-..-..|++.-++.+.. ..|-+ -.-+|.-++.| ++--..+ ..+.|
T Consensus 367 ~~Pi~ItENG~~~~d~~~~~g~-i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~-----V~GY~~WSl~D-n~Ew~~G~y~~Rf 439 (476)
T PRK09589 367 QLPLFIVENGFGAIDQREADGT-VNDHYRIDYLAAHIREMKKAVVEDGVD-----LMGYTPWGCID-LVSAGTGEMKKRY 439 (476)
T ss_pred CCCEEEEeCCcccCCCCCcCCc-ccCHHHHHHHHHHHHHHHHHHHhcCCC-----eEEEeeccccc-cccccCCccccce
Confidence 35899999999854321 111 1122233344444433332 13433 23577788887 4333234 78999
Q ss_pred eeecCCCc
Q 043682 310 GLYYPNGN 317 (360)
Q Consensus 310 Glf~~d~~ 317 (360)
||++.|.+
T Consensus 440 Glv~VD~~ 447 (476)
T PRK09589 440 GFIYVDKD 447 (476)
T ss_pred eeEEEcCC
Confidence 99998765
No 33
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=45.88 E-value=43 Score=30.64 Aligned_cols=91 Identities=19% Similarity=0.265 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhCCCCCceEEeeccchhhhhccCCCCCcccccchhhhH-HHHHhhhhhcCCCceeecC-CCccccCC
Q 043682 111 LLPAMQTVYKTLVDLGLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVYI-QPILSFHSQVKSPFLINAY-PYFAYKDS 188 (360)
Q Consensus 111 Lv~~m~~vr~aL~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~F~~~~~~~l-~~~ldfL~~~~s~~~vNiy-Pff~~~~~ 188 (360)
.-.+++.+.+.+...|+.+ |++.+.... +.|.. +.. .++++.+++.+-|+.+|+- +.+...
T Consensus 83 ~~~~~~~l~~~~~~~g~~G-v~l~~~~~~------~~~~~--------~~~~~~~~~~~~~~~~pv~~H~g~~~~~~~-- 145 (273)
T PF04909_consen 83 PEDAVEELERALQELGFRG-VKLHPDLGG------FDPDD--------PRLDDPIFEAAEELGLPVLIHTGMTGFPDA-- 145 (273)
T ss_dssp HHHHHHHHHHHHHTTTESE-EEEESSETT------CCTTS--------GHCHHHHHHHHHHHT-EEEEEESHTHHHHH--
T ss_pred chhHHHHHHHhccccceee-eEecCCCCc------ccccc--------HHHHHHHHHHHHhhccceeeeccccchhhh--
Confidence 4568888888898899876 787764321 11111 122 3788888888877777743 111100
Q ss_pred CCCcccccccccCCCCcccCCCccchhHHHHHHHHHHHHHHHHcCCCCccEEEeeeccC
Q 043682 189 PNQVPLDYVLFQPNQGTTDPITNLKYDNMLYAQIDAVYSAMKAMGHTDIEVRISETGWP 247 (360)
Q Consensus 189 p~~i~ldyAlf~~~~~~vd~~~~~~y~n~fda~~da~~~al~k~g~~~~~vvVtETGWP 247 (360)
..-..+...+...+++ +|+++|++.+.|+|
T Consensus 146 ---------------------------~~~~~~~~~~~~~~~~--~P~l~ii~~H~G~~ 175 (273)
T PF04909_consen 146 ---------------------------PSDPADPEELEELLER--FPDLRIILAHLGGP 175 (273)
T ss_dssp ---------------------------HHHHHHHHHHTTHHHH--STTSEEEESGGGTT
T ss_pred ---------------------------hHHHHHHHHHHHHHHH--hcCCeEEEecCccc
Confidence 1111122222233434 89999999999999
No 34
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=45.31 E-value=1.5e+02 Score=30.68 Aligned_cols=128 Identities=10% Similarity=0.116 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHH---hCCCCeEEEccCC--------------hHHHHHhhc-CCC-eEEEEeCc------hhhccccCc-
Q 043682 37 LPSPSRVSVLLR---SLNISRVKLYDTD--------------PVVLSAFSN-SNV-DFIIGLGN------EYLENMTDP- 90 (360)
Q Consensus 37 ~ps~~~V~~llk---s~~i~~VRlY~~d--------------~~vL~A~~~-tgi-kV~lGv~n------~~l~~la~~- 90 (360)
..++++|++.++ ..|++.|.+.+.+ .++++++.+ .|+ ++-++.-+ +.++.+++.
T Consensus 183 sr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~i~~ell~~l~~~~ 262 (459)
T PRK14338 183 SRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPAWMTDRLIHAVARLP 262 (459)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChhhcCHHHHHHHhccc
Confidence 456788876443 4688888887632 246666665 354 34332211 112233221
Q ss_pred cc---cc----ccc-ceec--CCCCchHhHHHHHHHHHHHHHHhCCCCCceEEeeccchhhhhccCCCCCcccccchhhh
Q 043682 91 AK---AQ----IGN-EVFK--GEDTKLYSYLLPAMQTVYKTLVDLGLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVY 160 (360)
Q Consensus 91 ~~---A~----VGN-Evl~--~~~~~~~~~Lv~~m~~vr~aL~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~F~~~~~~~ 160 (360)
.. .. -|+ |+|. +...+ ..+.+..++.+|+... .+.|+|..-. .+| .+-.+.
T Consensus 263 ~~~~~v~lglQSgsd~vLk~m~R~~t-~e~~~~~i~~lr~~~p------gi~i~~d~Iv-----G~P-------gET~ed 323 (459)
T PRK14338 263 KCCPHINLPVQAGDDEVLKRMRRGYT-VARYRELIARIREAIP------DVSLTTDIIV-----GHP-------GETEEQ 323 (459)
T ss_pred ccccceecCcccCCHHHHHhccCCCC-HHHHHHHHHHHHHhCC------CCEEEEEEEE-----ECC-------CCCHHH
Confidence 11 11 244 3331 22223 6677888888776531 2556554321 233 122355
Q ss_pred HHHHHhhhhhcCCCceeecCCCcc
Q 043682 161 IQPILSFHSQVKSPFLINAYPYFA 184 (360)
Q Consensus 161 l~~~ldfL~~~~s~~~vNiyPff~ 184 (360)
+.+.++|+.+.+ +-.+++++|--
T Consensus 324 ~~~ti~~l~~l~-~~~v~i~~ysp 346 (459)
T PRK14338 324 FQRTYDLLEEIR-FDKVHIAAYSP 346 (459)
T ss_pred HHHHHHHHHHcC-CCEeEEEecCC
Confidence 667788887754 33567776643
No 35
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=45.27 E-value=1.4e+02 Score=27.24 Aligned_cols=54 Identities=17% Similarity=0.302 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcCCCCccEEEee-eccCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 043682 221 QIDAVYSAMKAMGHTDIEVRISE-TGWPSKGDENEAGATVENAELYNGNLLKRIQQ 275 (360)
Q Consensus 221 ~~da~~~al~k~g~~~~~vvVtE-TGWPS~G~~~~~~aS~~na~~y~~~li~~~~s 275 (360)
.++..+..++ .++|++||++.| .++|..--.+....+.+..+...+..++.+++
T Consensus 79 ~~~~fv~~iR-~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~ 133 (178)
T PF14606_consen 79 RLDGFVKTIR-EAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRK 133 (178)
T ss_dssp HHHHHHHHHH-TT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444454 459999999999 45554422233457777888888888888763
No 36
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=43.59 E-value=3.2e+02 Score=28.05 Aligned_cols=58 Identities=16% Similarity=0.230 Sum_probs=33.1
Q ss_pred HhHHHHHHHHHHHHHHhCCCCCceEEeeccchhhhhccCCCCCcccccchhhhHHHHHhhhhhcCCCceeecCCCcc
Q 043682 108 YSYLLPAMQTVYKTLVDLGLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVYIQPILSFHSQVKSPFLINAYPYFA 184 (360)
Q Consensus 108 ~~~Lv~~m~~vr~aL~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~F~~~~~~~l~~~ldfL~~~~s~~~vNiyPff~ 184 (360)
..+...+++.+|+.+. .+.++|..- . .+| .+-.+.+...++|+.+.+ +-.+|+++|-.
T Consensus 281 ~~~~~~~i~~lr~~~~------~i~i~~d~I----v-G~P-------gET~ed~~~tl~~i~~l~-~~~~~~~~~sp 338 (439)
T PRK14328 281 REYYLELVEKIKSNIP------DVAITTDII----V-GFP-------GETEEDFEETLDLVKEVR-YDSAFTFIYSK 338 (439)
T ss_pred HHHHHHHHHHHHHhCC------CCEEEEEEE----E-ECC-------CCCHHHHHHHHHHHHhcC-CCcccceEecC
Confidence 6677888888777532 245554321 1 244 112345666788877654 34567776654
No 37
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=43.00 E-value=1.3e+02 Score=32.08 Aligned_cols=75 Identities=17% Similarity=0.291 Sum_probs=49.2
Q ss_pred CCCCccEEEeeeccCCCCCCC-------CCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCcceEEEEEeec-CCCCCCCC
Q 043682 233 GHTDIEVRISETGWPSKGDEN-------EAGATVENAELYNGNLLKRIQQKQGTPGKPSVPVDVYFFALFN-ENLKPGPT 304 (360)
Q Consensus 233 g~~~~~vvVtETGWPS~G~~~-------~~~aS~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FD-E~wK~g~~ 304 (360)
.|.|.+|.|+|-|-+...+.. ....=++..+.|++.+.+.++. .|- .-.-+|..++-| =.|.. +
T Consensus 404 ~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgv-----nv~GYf~WSLmDnfEw~~--G 475 (524)
T KOG0626|consen 404 KYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGV-----NVKGYFVWSLLDNFEWLD--G 475 (524)
T ss_pred hcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCC-----ceeeEEEeEcccchhhhc--C
Confidence 488999999999998875431 0123445566666666666652 221 133588899887 34553 5
Q ss_pred CCcceeeecCC
Q 043682 305 SERNYGLYYPN 315 (360)
Q Consensus 305 ~E~~wGlf~~d 315 (360)
..-.|||++.|
T Consensus 476 y~~RFGlyyVD 486 (524)
T KOG0626|consen 476 YKVRFGLYYVD 486 (524)
T ss_pred cccccccEEEe
Confidence 67899999853
No 38
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=42.89 E-value=74 Score=33.34 Aligned_cols=74 Identities=14% Similarity=0.189 Sum_probs=41.7
Q ss_pred ccEEEeeeccCCCCCC--CCCC---CCHHHHHHHHHHHHHHHHhhcCCCCCCCCcceEEEEEeecCCCCCCCC-CCccee
Q 043682 237 IEVRISETGWPSKGDE--NEAG---ATVENAELYNGNLLKRIQQKQGTPGKPSVPVDVYFFALFNENLKPGPT-SERNYG 310 (360)
Q Consensus 237 ~~vvVtETGWPS~G~~--~~~~---aS~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE~wK~g~~-~E~~wG 310 (360)
+||+|||-|....... ++.. -=++.-+.+++.+.+.+. ..|-+- .-+|.-++.| ++--..+ .++.||
T Consensus 369 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~-~dGv~v-----~GY~~WSl~D-n~EW~~G~y~~RfG 441 (478)
T PRK09593 369 KPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAIN-EDGVEL-----LGYTTWGCID-LVSAGTGEMKKRYG 441 (478)
T ss_pred CCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHH-HcCCCE-----EEEeeccchH-hhcccCCCccCeec
Confidence 5899999999865432 1111 112333444444444442 134332 3477777777 4332234 889999
Q ss_pred eecCCCc
Q 043682 311 LYYPNGN 317 (360)
Q Consensus 311 lf~~d~~ 317 (360)
|++.|..
T Consensus 442 l~~VD~~ 448 (478)
T PRK09593 442 FIYVDRD 448 (478)
T ss_pred eEEECCC
Confidence 9998765
No 39
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=42.57 E-value=1.8e+02 Score=29.80 Aligned_cols=58 Identities=7% Similarity=0.108 Sum_probs=34.2
Q ss_pred HhHHHHHHHHHHHHHHhCCCCCceEEeeccchhhhhccCCCCCcccccchhhhHHHHHhhhhhcCCCceeecCCCcc
Q 043682 108 YSYLLPAMQTVYKTLVDLGLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVYIQPILSFHSQVKSPFLINAYPYFA 184 (360)
Q Consensus 108 ~~~Lv~~m~~vr~aL~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~F~~~~~~~l~~~ldfL~~~~s~~~vNiyPff~ 184 (360)
..+...+++.+|+++. .+.++|..-. .|| .+-.+.+...++|+.+.+ +-.+|+++|-.
T Consensus 258 ~~~~~~~i~~lr~~~p------gi~i~~d~Iv-----GfP-------GET~edf~~tl~fi~~~~-~~~~~v~~ysp 315 (418)
T PRK14336 258 NQQYRELVERLKTAMP------DISLQTDLIV-----GFP-------SETEEQFNQSYKLMADIG-YDAIHVAAYSP 315 (418)
T ss_pred HHHHHHHHHHHHhhCC------CCEEEEEEEE-----ECC-------CCCHHHHHHHHHHHHhcC-CCEEEeeecCC
Confidence 6778888888887642 2556554321 244 122355667788877754 23466666553
No 40
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=42.31 E-value=59 Score=27.99 Aligned_cols=42 Identities=10% Similarity=0.225 Sum_probs=31.1
Q ss_pred CHHHHHHHHHhCCCCeEEEccC---------------------C--hHHHHHhhcCCCeEEEEeC
Q 043682 39 SPSRVSVLLRSLNISRVKLYDT---------------------D--PVVLSAFSNSNVDFIIGLG 80 (360)
Q Consensus 39 s~~~V~~llks~~i~~VRlY~~---------------------d--~~vL~A~~~tgikV~lGv~ 80 (360)
+++++++.||..+++.|-+|.- | .++++|+++.||+|++=+-
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEe
Confidence 3567777787777777777642 1 4688999999999887655
No 41
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=41.98 E-value=60 Score=27.03 Aligned_cols=37 Identities=8% Similarity=0.243 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCCeEEEc--cCC---hHHHHHhhcCCCeEEE
Q 043682 41 SRVSVLLRSLNISRVKLY--DTD---PVVLSAFSNSNVDFII 77 (360)
Q Consensus 41 ~~V~~llks~~i~~VRlY--~~d---~~vL~A~~~tgikV~l 77 (360)
+++.+.++.+|++.|+++ +.. ..++++++..|+++.-
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 334456777899999998 332 6799999999998653
No 42
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=41.79 E-value=2.4e+02 Score=28.72 Aligned_cols=59 Identities=14% Similarity=0.203 Sum_probs=34.9
Q ss_pred HhHHHHHHHHHHHHHHhCCCCCceEEeeccchhhhhccCCCCCcccccchhhhHHHHHhhhhhcCCCceeecCCCccc
Q 043682 108 YSYLLPAMQTVYKTLVDLGLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVYIQPILSFHSQVKSPFLINAYPYFAY 185 (360)
Q Consensus 108 ~~~Lv~~m~~vr~aL~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~F~~~~~~~l~~~ldfL~~~~s~~~vNiyPff~~ 185 (360)
..+...+++.+|++.. .+.|++.. +. .+| .+-.+.+.+.++|+.+.+ +-.+|+++|-..
T Consensus 269 ~~~~~~~i~~l~~~~~------~i~i~~~~----I~-G~P-------gET~e~~~~t~~fl~~~~-~~~~~~~~~sp~ 327 (430)
T TIGR01125 269 GEQQLDFIERLREKCP------DAVLRTTF----IV-GFP-------GETEEDFQELLDFVEEGQ-FDRLGAFTYSPE 327 (430)
T ss_pred HHHHHHHHHHHHHhCC------CCeEeEEE----EE-ECC-------CCCHHHHHHHHHHHHhcC-CCEEeeeeccCC
Confidence 5677888887776531 24455442 11 233 122356677889988754 456788876654
No 43
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=39.81 E-value=75 Score=33.30 Aligned_cols=75 Identities=13% Similarity=0.256 Sum_probs=41.6
Q ss_pred CccEEEeeeccCCCCCC--CCCCCCHHHHHHHHHHHHHHHHh--hcCCCCCCCCcceEEEEEeecCCCCCCCC-CCccee
Q 043682 236 DIEVRISETGWPSKGDE--NEAGATVENAELYNGNLLKRIQQ--KQGTPGKPSVPVDVYFFALFNENLKPGPT-SERNYG 310 (360)
Q Consensus 236 ~~~vvVtETGWPS~G~~--~~~~aS~~na~~y~~~li~~~~s--~~Gtp~rp~~~~~~y~F~~FDE~wK~g~~-~E~~wG 310 (360)
++||+|||-|....... ++. -.-..-..|++.-++.+.. ..|-+ -.-+|.-++.| +|--..+ ..+.||
T Consensus 365 ~~Pi~ItENG~~~~d~~~~~g~-i~D~~Ri~Yl~~hl~~~~~Ai~dGv~-----V~GY~~WSl~D-n~Ew~~G~y~~RfG 437 (474)
T PRK09852 365 QKPLFLVENGLGAKDEIAANGE-INDDYRISYLREHIRAMGEAIADGIP-----LMGYTTWGCID-LVSASTGEMSKRYG 437 (474)
T ss_pred CCCEEEeCCCCCCCCCcCCCCc-cCCHHHHHHHHHHHHHHHHHHHCCCC-----EEEEEeecccc-cccccCCCccceee
Confidence 35899999999855421 111 1122233344444433332 13433 23477777777 4443234 789999
Q ss_pred eecCCCc
Q 043682 311 LYYPNGN 317 (360)
Q Consensus 311 lf~~d~~ 317 (360)
|++.|.+
T Consensus 438 Lv~VD~~ 444 (474)
T PRK09852 438 FVYVDRD 444 (474)
T ss_pred eEEECCC
Confidence 9998765
No 44
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=38.77 E-value=62 Score=33.90 Aligned_cols=75 Identities=12% Similarity=0.177 Sum_probs=41.4
Q ss_pred CccEEEeeeccCCCCCC--CCCCCCHHHHHHHHHHHHHHHHh---hcCCCCCCCCcceEEEEEeecCCCCCCCC-CCcce
Q 043682 236 DIEVRISETGWPSKGDE--NEAGATVENAELYNGNLLKRIQQ---KQGTPGKPSVPVDVYFFALFNENLKPGPT-SERNY 309 (360)
Q Consensus 236 ~~~vvVtETGWPS~G~~--~~~~aS~~na~~y~~~li~~~~s---~~Gtp~rp~~~~~~y~F~~FDE~wK~g~~-~E~~w 309 (360)
++||+|||-|....... ++. -.-..--.|++.-++.+.. ..|-+ -.-+|.-++.| ++--..+ .++.|
T Consensus 368 ~~Pi~ItENG~~~~d~~~~~g~-i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~-----v~GY~~WSl~D-nfEw~~G~y~~Rf 440 (477)
T PRK15014 368 QKPLFIVENGFGAYDKVEEDGS-INDDYRIDYLRAHIEEMKKAVTYDGVD-----LMGYTPWGCID-CVSFTTGQYSKRY 440 (477)
T ss_pred CCCEEEeCCCCCCCCCcCcCCc-cCCHHHHHHHHHHHHHHHHHHHHcCCC-----EEEEeeccchh-hhcccCCCccCcc
Confidence 35899999999865421 111 1112233344444433332 13432 23477777777 4332234 88999
Q ss_pred eeecCCCc
Q 043682 310 GLYYPNGN 317 (360)
Q Consensus 310 Glf~~d~~ 317 (360)
||++.|.+
T Consensus 441 Gl~~VD~~ 448 (477)
T PRK15014 441 GFIYVNKH 448 (477)
T ss_pred ceEEECCC
Confidence 99988654
No 45
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=38.67 E-value=38 Score=34.42 Aligned_cols=32 Identities=9% Similarity=0.428 Sum_probs=28.5
Q ss_pred HHHHHhCCCCeEEEccCChHHHHHhhcCCCeEE
Q 043682 44 SVLLRSLNISRVKLYDTDPVVLSAFSNSNVDFI 76 (360)
Q Consensus 44 ~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~ 76 (360)
.+.|+.+||++|||. .+|.=+.++.+.||+|.
T Consensus 331 AqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~ 362 (369)
T PRK12485 331 AQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVV 362 (369)
T ss_pred HHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEE
Confidence 678999999999999 67888888899999986
No 46
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.17 E-value=1.1e+02 Score=31.19 Aligned_cols=42 Identities=24% Similarity=0.400 Sum_probs=27.3
Q ss_pred HcCCCCccEEEeeeccCCCCCC---CCCCCCHHHHHHHHHHHHHHHHh
Q 043682 231 AMGHTDIEVRISETGWPSKGDE---NEAGATVENAELYNGNLLKRIQQ 275 (360)
Q Consensus 231 k~g~~~~~vvVtETGWPS~G~~---~~~~aS~~na~~y~~~li~~~~s 275 (360)
..|.+..+|+.+ |||.|.- +--..|-..++.-+.+++..+..
T Consensus 142 d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~ 186 (377)
T COG4782 142 DSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLAT 186 (377)
T ss_pred hcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHh
Confidence 456778899888 9999963 22235555556666666666653
No 47
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=37.58 E-value=52 Score=30.06 Aligned_cols=33 Identities=24% Similarity=0.521 Sum_probs=29.3
Q ss_pred HHHHHhCCCCeEEEccCChHHHHHhhcCCCeEE
Q 043682 44 SVLLRSLNISRVKLYDTDPVVLSAFSNSNVDFI 76 (360)
Q Consensus 44 ~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~ 76 (360)
++.|+.+|+++||+.+..+.=+.++.+.|++|.
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv 165 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVV 165 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEE
Confidence 678889999999999988877888899999987
No 48
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=36.72 E-value=42 Score=26.39 Aligned_cols=28 Identities=11% Similarity=0.048 Sum_probs=19.5
Q ss_pred HhHHHHHHHHHHHHHHhCCCCCceEEeecc
Q 043682 108 YSYLLPAMQTVYKTLVDLGLDKQVIVTSAH 137 (360)
Q Consensus 108 ~~~Lv~~m~~vr~aL~~~gl~~~I~VsT~~ 137 (360)
...+.+.|+++-+.+++.+- ..|||+..
T Consensus 37 ~~~~~~~l~~~~~~iR~~dP--~~pvt~g~ 64 (88)
T PF12876_consen 37 AEAYAEWLKEAFRWIRAVDP--SQPVTSGF 64 (88)
T ss_dssp SHHHHHHHHHHHHHHHTT-T--TS-EE--B
T ss_pred HHHHHHHHHHHHHHHHHhCC--CCcEEeec
Confidence 57899999999999998875 35776653
No 49
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=36.49 E-value=88 Score=29.29 Aligned_cols=41 Identities=15% Similarity=0.326 Sum_probs=23.5
Q ss_pred HcCCCCccEEEeeeccCCCCCCCC---CCCCHHHHHHHHHHHHHHHH
Q 043682 231 AMGHTDIEVRISETGWPSKGDENE---AGATVENAELYNGNLLKRIQ 274 (360)
Q Consensus 231 k~g~~~~~vvVtETGWPS~G~~~~---~~aS~~na~~y~~~li~~~~ 274 (360)
..++++.+|+. .|||.|...+ ...+...++..+.+++..+.
T Consensus 44 ~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~ 87 (233)
T PF05990_consen 44 DLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLA 87 (233)
T ss_pred HhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 44567755554 4999997421 22344445555566666554
No 50
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=35.63 E-value=45 Score=33.81 Aligned_cols=32 Identities=19% Similarity=0.467 Sum_probs=29.0
Q ss_pred HHHHHhCCCCeEEEccCChHHHHHhhcCCCeEE
Q 043682 44 SVLLRSLNISRVKLYDTDPVVLSAFSNSNVDFI 76 (360)
Q Consensus 44 ~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~ 76 (360)
.+.|+.+|+++||+.. +|.=..++++.||+|.
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~ 359 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVT 359 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEE
Confidence 6789999999999999 8888888999999987
No 51
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=34.79 E-value=2.9e+02 Score=29.27 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=33.1
Q ss_pred HhHHHHHHHHHHHHHHhCCCCCceEEeeccchhhhhccCCCCCcccccchhhhHHHHHhhhhhcCCCceeecCCCcc
Q 043682 108 YSYLLPAMQTVYKTLVDLGLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVYIQPILSFHSQVKSPFLINAYPYFA 184 (360)
Q Consensus 108 ~~~Lv~~m~~vr~aL~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~F~~~~~~~l~~~ldfL~~~~s~~~vNiyPff~ 184 (360)
.++.+..++.+|+++. .+.++|..- . .|| .+-.+.+.+.++|+.+.+ +-.+++|+|-.
T Consensus 346 ~e~~~~~v~~lr~~~p------~i~i~tdiI----v-GfP-------gET~edf~~Tl~~v~~l~-~d~~~~f~ysp 403 (509)
T PRK14327 346 RESYLELVRKIKEAIP------NVALTTDII----V-GFP-------NETDEQFEETLSLYREVG-FDHAYTFIYSP 403 (509)
T ss_pred HHHHHHHHHHHHHhCC------CcEEeeeEE----E-eCC-------CCCHHHHHHHHHHHHHcC-CCeEEEeeeeC
Confidence 6778888888887642 355665432 1 254 122345566778877653 23466666544
No 52
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=34.61 E-value=5.2e+02 Score=26.41 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=34.3
Q ss_pred HhHHHHHHHHHHHHHHhCCCCCceEEeeccchhhhhccCCCCCcccccchhhhHHHHHhhhhhcCCCceeecCCCccc
Q 043682 108 YSYLLPAMQTVYKTLVDLGLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVYIQPILSFHSQVKSPFLINAYPYFAY 185 (360)
Q Consensus 108 ~~~Lv~~m~~vr~aL~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~F~~~~~~~l~~~ldfL~~~~s~~~vNiyPff~~ 185 (360)
..+...+++.+|+... .+.|+|..-. .+| .+-.+.+...++|+.+.+ +-.+|+++|-..
T Consensus 274 ~~~~~~~i~~lr~~~~------~i~i~~d~Iv-----GfP-------gET~edf~~tl~fi~~~~-~~~~~~~~~sp~ 332 (434)
T PRK14330 274 REEYLELIEKIRSKVP------DASISSDIIV-----GFP-------TETEEDFMETVDLVEKAQ-FERLNLAIYSPR 332 (434)
T ss_pred HHHHHHHHHHHHHhCC------CCEEEEEEEE-----ECC-------CCCHHHHHHHHHHHHhcC-CCEEeeeeccCC
Confidence 5677777877777531 2566665321 244 222355677788887765 335566665543
No 53
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=34.56 E-value=82 Score=26.93 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCCCeEEEccCChHHHHHhhcCCCeEEEEeC
Q 043682 41 SRVSVLLRSLNISRVKLYDTDPVVLSAFSNSNVDFIIGLG 80 (360)
Q Consensus 41 ~~V~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~lGv~ 80 (360)
-.+.++|+..|++.|=+...-+..+.+|++.||+|..+..
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 3578899999999998888889999999999999999877
No 54
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=34.48 E-value=89 Score=26.48 Aligned_cols=37 Identities=8% Similarity=0.139 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCCeEEEc--c--------CC---hHHHHHhhcCCCeEEE
Q 043682 41 SRVSVLLRSLNISRVKLY--D--------TD---PVVLSAFSNSNVDFII 77 (360)
Q Consensus 41 ~~V~~llks~~i~~VRlY--~--------~d---~~vL~A~~~tgikV~l 77 (360)
+++.+.++.+|++.|+++ + +. +.+|++++..||++..
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~ 102 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 102 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 444556677899988887 3 33 5799999999999753
No 55
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=33.83 E-value=3.3e+02 Score=28.09 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=34.0
Q ss_pred HhHHHHHHHHHHHHHHhCCCCCceEEeeccchhhhhccCCCCCcccccchhhhHHHHHhhhhhcCCCceeecCCCc
Q 043682 108 YSYLLPAMQTVYKTLVDLGLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVYIQPILSFHSQVKSPFLINAYPYF 183 (360)
Q Consensus 108 ~~~Lv~~m~~vr~aL~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~F~~~~~~~l~~~ldfL~~~~s~~~vNiyPff 183 (360)
.++...+++.+|++.. .+.++|..-. .+| .+-.+.+.+.++|+.+.+ +-.+|+|+|-
T Consensus 283 ~e~~~~~v~~lr~~~~------~i~i~~d~Iv-----G~P-------gET~ed~~~tl~~l~~~~-~~~~~~f~ys 339 (446)
T PRK14337 283 MARYLDIVTDLRAARP------DIALTTDLIV-----GFP-------GETEEDFEQTLEAMRTVG-FASSFSFCYS 339 (446)
T ss_pred HHHHHHHHHHHHHhCC------CCeEEEeEEE-----ECC-------CCCHHHHHHHHHHHHhcC-CCeeEEEecC
Confidence 5678888888877632 2556665321 244 122355667788887754 4566776653
No 56
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=33.74 E-value=33 Score=30.65 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=18.4
Q ss_pred hHHHHHhhcCCCeEEEEeCch
Q 043682 62 PVVLSAFSNSNVDFIIGLGNE 82 (360)
Q Consensus 62 ~~vL~A~~~tgikV~lGv~n~ 82 (360)
..+|+++.+.||||++|++.+
T Consensus 68 ~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 68 EMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHHcCCEEEEeCCCC
Confidence 468899999999999999954
No 57
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.87 E-value=3.5e+02 Score=27.68 Aligned_cols=103 Identities=13% Similarity=0.216 Sum_probs=55.4
Q ss_pred CCCCeEEEccCC-----hHHHHHhhcCC---CeEEEEeCchhhccccCccccccccceecCCCCchHhHHHHHHHHHHHH
Q 043682 50 LNISRVKLYDTD-----PVVLSAFSNSN---VDFIIGLGNEYLENMTDPAKAQIGNEVFKGEDTKLYSYLLPAMQTVYKT 121 (360)
Q Consensus 50 ~~i~~VRlY~~d-----~~vL~A~~~tg---ikV~lGv~n~~l~~la~~~~A~VGNEvl~~~~~~~~~~Lv~~m~~vr~a 121 (360)
.|+.+||+-..+ +++|+++++++ ..+.+|+-..+-.-| +.+.++ .+ .++.+.+++.+|++
T Consensus 210 ~g~~~ir~~s~~p~~~~~ell~~~~~~~~~~~~l~iglQSgsd~vL----------k~M~R~-~t-~~~~~~~v~~lr~~ 277 (420)
T PRK14339 210 EGLERIRFTSPHPLHMDDKFLEEFAKNPKICKSIHMPLQSGSSEIL----------KAMKRG-YT-KEWFLNRAEKLRAL 277 (420)
T ss_pred CCccEEEECCCChhhcCHHHHHHHHcCCCccCceEeCCccCCHHHH----------HhccCC-CC-HHHHHHHHHHHHHH
Confidence 366777764332 56777777654 346666553211111 011232 23 66788888888876
Q ss_pred HHhCCCCCceEEeeccchhhhhccCCCCCcccccchhhhHHHHHhhhhhcCCCceeecCCCc
Q 043682 122 LVDLGLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVYIQPILSFHSQVKSPFLINAYPYF 183 (360)
Q Consensus 122 L~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~F~~~~~~~l~~~ldfL~~~~s~~~vNiyPff 183 (360)
.. .+.++|.. +. .|| .+-.+.+.+.++|+.+.+- -.+|+|+|-
T Consensus 278 ~p------~i~i~~d~----Iv-GfP-------gETeedf~~Tl~fl~~l~~-~~~~~f~~s 320 (420)
T PRK14339 278 VP------EVSISTDI----IV-GFP-------GESDKDFEDTMDVLEKVRF-EQIFSFKYS 320 (420)
T ss_pred CC------CCEEEEEE----EE-ECC-------CCCHHHHHHHHHHHHhcCC-CEEeeEecC
Confidence 42 25566642 21 354 2223556677888776542 236777643
No 58
>CHL00041 rps11 ribosomal protein S11
Probab=32.23 E-value=1e+02 Score=25.95 Aligned_cols=35 Identities=11% Similarity=0.157 Sum_probs=26.5
Q ss_pred HHHHHHHhCCCCeEEEc--cC--C-hHHHHHhhcCCCeEE
Q 043682 42 RVSVLLRSLNISRVKLY--DT--D-PVVLSAFSNSNVDFI 76 (360)
Q Consensus 42 ~V~~llks~~i~~VRlY--~~--d-~~vL~A~~~tgikV~ 76 (360)
.+.+.++..|++.|+++ +. - ..++++++..|++|.
T Consensus 64 ~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 64 NAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 33456677899999888 23 2 679999999999875
No 59
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=32.23 E-value=80 Score=32.43 Aligned_cols=34 Identities=12% Similarity=0.303 Sum_probs=30.4
Q ss_pred HHHHHHhCCCCeEEEccCChHHHHHhhcCCCeEE
Q 043682 43 VSVLLRSLNISRVKLYDTDPVVLSAFSNSNVDFI 76 (360)
Q Consensus 43 V~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~ 76 (360)
-.+.|+.+|+++||+...+|.=+.++.+.||+|.
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~ 371 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVT 371 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEE
Confidence 3678899999999999999988888999999997
No 60
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=31.66 E-value=66 Score=32.93 Aligned_cols=37 Identities=19% Similarity=0.383 Sum_probs=31.8
Q ss_pred HHHHHhCCCCeEEEccCChHHHHHhhcCCCeEEEEeC
Q 043682 44 SVLLRSLNISRVKLYDTDPVVLSAFSNSNVDFIIGLG 80 (360)
Q Consensus 44 ~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~lGv~ 80 (360)
.+.|+.+|+++||+.+.+|.=+.++.+.||+|.==++
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6788999999999999999888899999999974333
No 61
>PRK08815 GTP cyclohydrolase; Provisional
Probab=31.37 E-value=66 Score=32.74 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=30.2
Q ss_pred HHHHHhCCCCeEEEccCChHHHHHhhcCCCeEEE
Q 043682 44 SVLLRSLNISRVKLYDTDPVVLSAFSNSNVDFII 77 (360)
Q Consensus 44 ~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~l 77 (360)
.+.|+.+|+++||+.+.++.=+.++++.||+|.=
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~ 338 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVED 338 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEE
Confidence 5788899999999999998888889999999973
No 62
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=30.87 E-value=65 Score=32.37 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHhCCCCeEEEccCC-hHHHHHhhcCCCeEE
Q 043682 37 LPSPSRVSVLLRSLNISRVKLYDTD-PVVLSAFSNSNVDFI 76 (360)
Q Consensus 37 ~ps~~~V~~llks~~i~~VRlY~~d-~~vL~A~~~tgikV~ 76 (360)
.....--.+.|+.+|+++||+...+ |.=..++++.||+|.
T Consensus 294 ~RdygigaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 294 VKDYGIGAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred ccchhHHHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 4455555788999999999999998 887888999999986
No 63
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=30.73 E-value=89 Score=33.50 Aligned_cols=40 Identities=15% Similarity=0.324 Sum_probs=33.3
Q ss_pred HHHHHHHHhCCCCeEEEccCChHHHHHhhcCCCeEEEEeC
Q 043682 41 SRVSVLLRSLNISRVKLYDTDPVVLSAFSNSNVDFIIGLG 80 (360)
Q Consensus 41 ~~V~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~lGv~ 80 (360)
.--.+.|+.+||++||+...+|.=+.++++.||+|.==++
T Consensus 340 gigAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 340 GVGAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred hHHHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 3346788999999999999999989999999999874443
No 64
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=30.59 E-value=83 Score=26.18 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=27.2
Q ss_pred HHHHHHHHhCCCCeEEEc--cCC---hHHHHHhhcCCCeEEE
Q 043682 41 SRVSVLLRSLNISRVKLY--DTD---PVVLSAFSNSNVDFII 77 (360)
Q Consensus 41 ~~V~~llks~~i~~VRlY--~~d---~~vL~A~~~tgikV~l 77 (360)
+.+.+.++.+|++.|+++ +.. ..++++++.+|++|.-
T Consensus 50 ~~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 50 EKIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 333455677899999988 333 5799999999998653
No 65
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=30.17 E-value=2.3e+02 Score=27.35 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=37.6
Q ss_pred hHHHHHhhcCCCeEEEEeCchh--------hcccc-Cccc----cc---------------cccceecCCCCchHhHHHH
Q 043682 62 PVVLSAFSNSNVDFIIGLGNEY--------LENMT-DPAK----AQ---------------IGNEVFKGEDTKLYSYLLP 113 (360)
Q Consensus 62 ~~vL~A~~~tgikV~lGv~n~~--------l~~la-~~~~----A~---------------VGNEvl~~~~~~~~~~Lv~ 113 (360)
+.+++++++.++||++.|.+.+ ..++. ++.. ++ +-=|.+.. +.....+.
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~---~d~~~~~~ 124 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVPP---EDREAYTQ 124 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCH---HHHHHHHH
Confidence 6788888888999998886532 12222 2110 11 11122211 11446889
Q ss_pred HHHHHHHHHHhCCC
Q 043682 114 AMQTVYKTLVDLGL 127 (360)
Q Consensus 114 ~m~~vr~aL~~~gl 127 (360)
.++.+|++|++.|+
T Consensus 125 fl~~lr~~l~~~~~ 138 (313)
T cd02874 125 FLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHhhhcCc
Confidence 99999999987665
No 66
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=29.96 E-value=2.7e+02 Score=27.04 Aligned_cols=96 Identities=17% Similarity=0.262 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhCCCCCceEEeeccchhhhhccCCCCCcccccchhhhHHHHHhhhhhcCCCceeecCCCccccCCCCC
Q 043682 112 LPAMQTVYKTLVDLGLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVYIQPILSFHSQVKSPFLINAYPYFAYKDSPNQ 191 (360)
Q Consensus 112 v~~m~~vr~aL~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~F~~~~~~~l~~~ldfL~~~~s~~~vNiyPff~~~~~p~~ 191 (360)
-.+..+++++.++.|+.+ +++..... .+.|+ .+.+.++..+.++.+-|+.+|.=+......
T Consensus 112 ~~a~~E~er~v~~~gf~g-~~l~p~~~------~~~~~--------~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~---- 172 (293)
T COG2159 112 EAAAEELERRVRELGFVG-VKLHPVAQ------GFYPD--------DPRLYPIYEAAEELGVPVVIHTGAGPGGAG---- 172 (293)
T ss_pred HHHHHHHHHHHHhcCceE-EEeccccc------CCCCC--------ChHHHHHHHHHHHcCCCEEEEeCCCCCCcc----
Confidence 345677777787777754 55543321 11222 134678888899999999996655444221
Q ss_pred cccccccccCCCCcccCCCccchhHHHHHHHHHHHHHHHHcCCCCccEEEeeec--cCCCCC
Q 043682 192 VPLDYVLFQPNQGTTDPITNLKYDNMLYAQIDAVYSAMKAMGHTDIEVRISETG--WPSKGD 251 (360)
Q Consensus 192 i~ldyAlf~~~~~~vd~~~~~~y~n~fda~~da~~~al~k~g~~~~~vvVtETG--WPS~G~ 251 (360)
++...+ ..+ .+|-+ ..+ +|+++||+++.| +|..-.
T Consensus 173 --~~~~~~---------------~p~---~~~~v---a~~--fP~l~IVl~H~G~~~p~~~~ 209 (293)
T COG2159 173 --LEKGHS---------------DPL---YLDDV---ARK--FPELKIVLGHMGEDYPWELE 209 (293)
T ss_pred --cccCCC---------------Cch---HHHHH---HHH--CCCCcEEEEecCCCCchhHH
Confidence 110000 000 22222 222 899999999999 887653
No 67
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=29.91 E-value=1.1e+02 Score=26.52 Aligned_cols=37 Identities=8% Similarity=0.118 Sum_probs=27.9
Q ss_pred HHHHHHHHhCCCCeEEEc--c--------CC---hHHHHHhhcCCCeEEE
Q 043682 41 SRVSVLLRSLNISRVKLY--D--------TD---PVVLSAFSNSNVDFII 77 (360)
Q Consensus 41 ~~V~~llks~~i~~VRlY--~--------~d---~~vL~A~~~tgikV~l 77 (360)
+++.+.++.+|++.|+++ + +. ..+|++++..||+|..
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~ 109 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 109 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEE
Confidence 444556777899998887 3 33 5799999999999753
No 68
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.82 E-value=6.4e+02 Score=26.05 Aligned_cols=113 Identities=11% Similarity=0.111 Sum_probs=55.3
Q ss_pred HhHHHHHHHHHHHHHHhCCCCCceEEeeccchhhhhccCCCCCcccccchhhhHHHHHhhhhhcCCCceeecCCCccccC
Q 043682 108 YSYLLPAMQTVYKTLVDLGLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVYIQPILSFHSQVKSPFLINAYPYFAYKD 187 (360)
Q Consensus 108 ~~~Lv~~m~~vr~aL~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~F~~~~~~~l~~~ldfL~~~~s~~~vNiyPff~~~~ 187 (360)
..+...+++.+|++.. .+.++|.. +. .|| .+-.+.+...++|+.+.+= =.+++|+|-....
T Consensus 285 ~~~~~~~i~~lr~~~p------~i~i~td~----Iv-GfP-------gET~edf~~tl~~v~~l~~-~~~~~f~ys~~~G 345 (449)
T PRK14332 285 KEEFLDVVKEIRNIVP------DVGITTDI----IV-GFP-------NETEEEFEDTLAVVREVQF-DMAFMFKYSEREG 345 (449)
T ss_pred HHHHHHHHHHHHHhCC------CCEEEEEE----Ee-eCC-------CCCHHHHHHHHHHHHhCCC-CEEEEEEecCCCC
Confidence 6788888888887643 24555532 21 244 2223455667788776542 3567777554432
Q ss_pred CCCCcccccccccCCCCcccCCCccchhHHHHHHHHHHHHHHHHcCCCCccEEEeeecc
Q 043682 188 SPNQVPLDYVLFQPNQGTTDPITNLKYDNMLYAQIDAVYSAMKAMGHTDIEVRISETGW 246 (360)
Q Consensus 188 ~p~~i~ldyAlf~~~~~~vd~~~~~~y~n~fda~~da~~~al~k~g~~~~~vvVtETGW 246 (360)
.| .+..+.. .+.+.....++..+.+-|-.......++.-....+|+|.|.+.
T Consensus 346 T~-----a~~~~~~--~v~~~~~~~R~~~l~~~~~~~~~~~~~~~vG~~~~vlve~~~~ 397 (449)
T PRK14332 346 TM-----AKRKLPD--NVPEEVKSARLTKLVDLQTSISHEQNRARIGRVYSILIENTSR 397 (449)
T ss_pred Ch-----hHHhCcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEeccC
Confidence 22 1111211 1111111234445544444433333444323456888876443
No 69
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=29.24 E-value=5.9e+02 Score=25.85 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=32.9
Q ss_pred HhHHHHHHHHHHHHHHhCCCCCceEEeeccchhhhhccCCCCCcccccchhhhHHHHHhhhhhcCCCceeecCCCccc
Q 043682 108 YSYLLPAMQTVYKTLVDLGLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVYIQPILSFHSQVKSPFLINAYPYFAY 185 (360)
Q Consensus 108 ~~~Lv~~m~~vr~aL~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~F~~~~~~~l~~~ldfL~~~~s~~~vNiyPff~~ 185 (360)
..+....++.+|+... .+.|++..-. .+| .+-.+.+...++|+.+.+ +-.+++|+|--.
T Consensus 273 ~~~~~~~i~~lr~~~~------~i~i~~~~Iv-----G~P-------gET~ed~~~tl~~i~~~~-~~~~~~~~~sp~ 331 (429)
T TIGR00089 273 REEYLDIVEKIRAKIP------DAAITTDIIV-----GFP-------GETEEDFEETLDLVEEVK-FDKLHSFIYSPR 331 (429)
T ss_pred HHHHHHHHHHHHHHCC------CCEEEeeEEE-----ECC-------CCCHHHHHHHHHHHHhcC-CCEeeccccCCC
Confidence 5667777777766421 2445554321 243 122355667788888754 346677776543
No 70
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=28.23 E-value=4e+02 Score=27.04 Aligned_cols=135 Identities=13% Similarity=0.128 Sum_probs=71.9
Q ss_pred HhHHHHHHHHHHHHHHhCCCCCceEEeeccchhhhhccCCCCCcccccchhhhHHHHHhhhhhcCCCceeecCCCccccC
Q 043682 108 YSYLLPAMQTVYKTLVDLGLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVYIQPILSFHSQVKSPFLINAYPYFAYKD 187 (360)
Q Consensus 108 ~~~Lv~~m~~vr~aL~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~F~~~~~~~l~~~ldfL~~~~s~~~vNiyPff~~~~ 187 (360)
..++...+++.|+ . .||+++...-.-|...+. .=.|.++.-+.++++++.|.+.+--++++++|+.....
T Consensus 42 ~~~v~~~i~~~~~----~----~iP~d~~~iD~~~~~~~~--~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~ 111 (441)
T PF01055_consen 42 QDEVREVIDRYRS----N----GIPLDVIWIDDDYQDGYG--DFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDS 111 (441)
T ss_dssp HHHHHHHHHHHHH----T----T--EEEEEE-GGGSBTTB--TT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTT
T ss_pred HHHHHHHHHHHHH----c----CCCccceecccccccccc--ccccccccccchHHHHHhHhhCCcEEEEEeecccCCCC
Confidence 4566666666655 2 477777653333433221 11222222256788999999999999999999877542
Q ss_pred CCCCcccccccccCCCCcccCCCccchhHHHHHHHHHHHHHHHHcCC----CCccEEEeeeccCCCCCCCCCCCCHHHHH
Q 043682 188 SPNQVPLDYVLFQPNQGTTDPITNLKYDNMLYAQIDAVYSAMKAMGH----TDIEVRISETGWPSKGDENEAGATVENAE 263 (360)
Q Consensus 188 ~p~~i~ldyAlf~~~~~~vd~~~~~~y~n~fda~~da~~~al~k~g~----~~~~vvVtETGWPS~G~~~~~~aS~~na~ 263 (360)
. + | ..++. +.+.|+ ++-...+++. ||-.+.- ..-+-.+++
T Consensus 112 ~------~------------------~-~~~~~--------~~~~~~~v~~~~g~~~~~~~-w~g~~~~--~Dftnp~a~ 155 (441)
T PF01055_consen 112 P------D------------------Y-ENYDE--------AKEKGYLVKNPDGSPYIGRV-WPGKGGF--IDFTNPEAR 155 (441)
T ss_dssp T------B--------------------HHHHH--------HHHTT-BEBCTTSSB-EEEE-TTEEEEE--B-TTSHHHH
T ss_pred C------c------------------c-hhhhh--------HhhcCceeecccCCcccccc-cCCcccc--cCCCChhHH
Confidence 1 1 1 11211 112221 2336677777 8844321 124445688
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcceEEEEEeec
Q 043682 264 LYNGNLLKRIQQKQGTPGKPSVPVDVYFFALFN 296 (360)
Q Consensus 264 ~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FD 296 (360)
.++++.++.+.+. .+++.++..+=+
T Consensus 156 ~w~~~~~~~~~~~--------~Gvdg~w~D~~E 180 (441)
T PF01055_consen 156 DWWKEQLKELLDD--------YGVDGWWLDFGE 180 (441)
T ss_dssp HHHHHHHHHHHTT--------ST-SEEEEESTT
T ss_pred HHHHHHHHHHHhc--------cCCceEEeecCC
Confidence 8888877777631 267888887633
No 71
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=28.16 E-value=1.1e+02 Score=32.00 Aligned_cols=35 Identities=14% Similarity=0.358 Sum_probs=30.9
Q ss_pred HHHHHHHhCCCCeEEEccCChHHHHHhhcCCCeEE
Q 043682 42 RVSVLLRSLNISRVKLYDTDPVVLSAFSNSNVDFI 76 (360)
Q Consensus 42 ~V~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~ 76 (360)
--.+.|+.+||++||+...+|.=+.++.+.||+|.
T Consensus 371 igAqIL~dLGI~~irLLTNNp~K~~~L~~~GieVv 405 (450)
T PLN02831 371 IGAQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVV 405 (450)
T ss_pred HHHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEE
Confidence 33678899999999999999988889999999997
No 72
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=28.12 E-value=1.3e+02 Score=31.14 Aligned_cols=21 Identities=19% Similarity=0.112 Sum_probs=17.1
Q ss_pred HhHHHHHHHHHHHHHHhCCCC
Q 043682 108 YSYLLPAMQTVYKTLVDLGLD 128 (360)
Q Consensus 108 ~~~Lv~~m~~vr~aL~~~gl~ 128 (360)
..+.+.-++.+.+.|.++|+.
T Consensus 262 ~~~~~~~~~~~~~~L~~~Gy~ 282 (453)
T PRK13347 262 AEERLRQARAVADRLLAAGYV 282 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCCE
Confidence 456677788899999999994
No 73
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=27.28 E-value=1.5e+02 Score=25.44 Aligned_cols=47 Identities=9% Similarity=0.244 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHhCCCCeEEEccCC-------hHHHHHhhcC---CCeEEEE--eCchhh
Q 043682 38 PSPSRVSVLLRSLNISRVKLYDTD-------PVVLSAFSNS---NVDFIIG--LGNEYL 84 (360)
Q Consensus 38 ps~~~V~~llks~~i~~VRlY~~d-------~~vL~A~~~t---gikV~lG--v~n~~l 84 (360)
-|++++++..++.+.+.|=+=+.+ +.+++++++. .++|++| +++++.
T Consensus 40 ~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~ 98 (132)
T TIGR00640 40 QTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDF 98 (132)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhH
Confidence 345555555555455555554433 3455555443 3556666 554433
No 74
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=27.00 E-value=3.4e+02 Score=22.43 Aligned_cols=73 Identities=14% Similarity=0.240 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHhCCCCeEEEccCC-------hHHHHHhhcC---CCeEEEE--eCchhhccccCccccccccceecCCCC
Q 043682 38 PSPSRVSVLLRSLNISRVKLYDTD-------PVVLSAFSNS---NVDFIIG--LGNEYLENMTDPAKAQIGNEVFKGEDT 105 (360)
Q Consensus 38 ps~~~V~~llks~~i~~VRlY~~d-------~~vL~A~~~t---gikV~lG--v~n~~l~~la~~~~A~VGNEvl~~~~~ 105 (360)
-+++++++..+..+-+.|=+-..+ +++++.+++. ++++++| .+.++.+.+.. -|=+.+.....
T Consensus 37 vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~-----~G~d~~~~~~~ 111 (122)
T cd02071 37 QTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKE-----MGVAEIFGPGT 111 (122)
T ss_pred CCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHH-----CCCCEEECCCC
Confidence 345577777776666777666554 3566667665 6788898 77665554421 12222222222
Q ss_pred chHhHHHHHHH
Q 043682 106 KLYSYLLPAMQ 116 (360)
Q Consensus 106 ~~~~~Lv~~m~ 116 (360)
. +.+++.+|+
T Consensus 112 ~-~~~~~~~~~ 121 (122)
T cd02071 112 S-IEEIIDKIR 121 (122)
T ss_pred C-HHHHHHHHh
Confidence 2 667777765
No 75
>PRK05309 30S ribosomal protein S11; Validated
Probab=26.74 E-value=1.5e+02 Score=25.54 Aligned_cols=36 Identities=6% Similarity=0.212 Sum_probs=27.1
Q ss_pred HHHHHHHHhCCCCeEEEc--cCC---hHHHHHhhcCCCeEE
Q 043682 41 SRVSVLLRSLNISRVKLY--DTD---PVVLSAFSNSNVDFI 76 (360)
Q Consensus 41 ~~V~~llks~~i~~VRlY--~~d---~~vL~A~~~tgikV~ 76 (360)
+.+.+.++.+|++.|+++ +.. ..++.++...|++|.
T Consensus 67 ~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 67 EDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 334456677899999999 332 679999999999865
No 76
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.58 E-value=6.6e+02 Score=24.47 Aligned_cols=27 Identities=4% Similarity=-0.028 Sum_probs=22.8
Q ss_pred hhHHHHHhhhhhcCCCceeecCCCccc
Q 043682 159 VYIQPILSFHSQVKSPFLINAYPYFAY 185 (360)
Q Consensus 159 ~~l~~~ldfL~~~~s~~~vNiyPff~~ 185 (360)
+..+++++-|.+.+--++++++|+...
T Consensus 70 Pdp~~mi~~L~~~G~k~~~~v~P~v~~ 96 (317)
T cd06598 70 PDPAGMIADLAKKGVKTIVITEPFVLK 96 (317)
T ss_pred CCHHHHHHHHHHcCCcEEEEEcCcccC
Confidence 456788889999999999999998863
No 77
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=24.53 E-value=2e+02 Score=24.40 Aligned_cols=47 Identities=13% Similarity=0.225 Sum_probs=37.0
Q ss_pred CCCCCHHHHHHHHHhCCCCeEEEccCC-----hHHHHHhhcCCCeEEEEeCc
Q 043682 35 NNLPSPSRVSVLLRSLNISRVKLYDTD-----PVVLSAFSNSNVDFIIGLGN 81 (360)
Q Consensus 35 ~~~ps~~~V~~llks~~i~~VRlY~~d-----~~vL~A~~~tgikV~lGv~n 81 (360)
+...+++++++..++.|++.|=+=|-+ +...+.++..||++++|+--
T Consensus 13 dg~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 13 DGKDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp TSSSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 335589999999999998888776543 45666777799999999975
No 78
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=24.23 E-value=2e+02 Score=26.65 Aligned_cols=51 Identities=8% Similarity=0.092 Sum_probs=38.1
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCeEEEccC---C-hHHHHHhhcCCCeEEE
Q 043682 26 VGINYGQIANNLPSPSRVSVLLRSLNISRVKLYDT---D-PVVLSAFSNSNVDFII 77 (360)
Q Consensus 26 ~Gv~Yg~~~~~~ps~~~V~~llks~~i~~VRlY~~---d-~~vL~A~~~tgikV~l 77 (360)
++||++.....+ +-++..+.++..|++.|-++.. + ..+.+.++++|++|..
T Consensus 3 ~~~~~~~~~~~~-~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 3 FAANLSMLFTEL-PFLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred eeEehhHhhcCC-CHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEE
Confidence 567777544443 6788899999999999999642 2 4577788899999753
No 79
>PLN00196 alpha-amylase; Provisional
Probab=23.70 E-value=3.1e+02 Score=28.36 Aligned_cols=56 Identities=23% Similarity=0.266 Sum_probs=34.4
Q ss_pred ceeEEecCCCCCCCCHHHHH---HHHHhCCCCeE-----------------EEccCC----------hHHHHHhhcCCCe
Q 043682 25 GVGINYGQIANNLPSPSRVS---VLLRSLNISRV-----------------KLYDTD----------PVVLSAFSNSNVD 74 (360)
Q Consensus 25 ~~Gv~Yg~~~~~~ps~~~V~---~llks~~i~~V-----------------RlY~~d----------~~vL~A~~~tgik 74 (360)
..|+.+-....+--.-..|. .-|+.+||+.| +.|+.| .+.++++.+.||+
T Consensus 28 ~Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIk 107 (428)
T PLN00196 28 FQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQ 107 (428)
T ss_pred EEeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCE
Confidence 35788654322212233343 45788888877 344443 2477888889999
Q ss_pred EEEEeC
Q 043682 75 FIIGLG 80 (360)
Q Consensus 75 V~lGv~ 80 (360)
|++-+=
T Consensus 108 VilDvV 113 (428)
T PLN00196 108 VIADIV 113 (428)
T ss_pred EEEEEC
Confidence 999764
No 80
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=23.17 E-value=2.4e+02 Score=27.74 Aligned_cols=58 Identities=14% Similarity=0.271 Sum_probs=33.9
Q ss_pred HhHHHHHHHHHHHHHHhCCCCCceEEeeccchh--hhhccCCCCCcccccchhhhHHHHHhhhhhcCCCceeecCCCcc
Q 043682 108 YSYLLPAMQTVYKTLVDLGLDKQVIVTSAHSLD--ILANSFPPSAGSFRQDLAVYIQPILSFHSQVKSPFLINAYPYFA 184 (360)
Q Consensus 108 ~~~Lv~~m~~vr~aL~~~gl~~~I~VsT~~~~~--~~~~s~pPs~~~F~~~~~~~l~~~ldfL~~~~s~~~vNiyPff~ 184 (360)
...++..|+++|++|++.+- ...++.+.... .+...| + .+.|.+.+|| +.+-.|-|..
T Consensus 133 ~~~~~~ll~~lr~~l~~~~~--~~~ls~av~~~~~~~~~~~---------d-~~~l~~~vD~-------v~vmtYD~~~ 192 (362)
T cd02872 133 KENFVTLLKELREAFEPEAP--RLLLTAAVSAGKETIDAAY---------D-IPEISKYLDF-------INVMTYDFHG 192 (362)
T ss_pred HHHHHHHHHHHHHHHHhhCc--CeEEEEEecCChHHHhhcC---------C-HHHHhhhcce-------EEEecccCCC
Confidence 35689999999999998731 12344332211 111112 1 2456777888 7777776654
No 81
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.04 E-value=2.9e+02 Score=28.76 Aligned_cols=127 Identities=13% Similarity=0.207 Sum_probs=65.9
Q ss_pred eeEEecCCCCCCC----CHHHHHHHHHh-CCCCeEEEccCC-----hHHHHHhhcC-CCeEEEEeCchhhccccCccccc
Q 043682 26 VGINYGQIANNLP----SPSRVSVLLRS-LNISRVKLYDTD-----PVVLSAFSNS-NVDFIIGLGNEYLENMTDPAKAQ 94 (360)
Q Consensus 26 ~Gv~Yg~~~~~~p----s~~~V~~llks-~~i~~VRlY~~d-----~~vL~A~~~t-gikV~lGv~n~~l~~la~~~~A~ 94 (360)
+|.|=+.||.+++ +-.+..+.+.+ .|+.+||+=..+ .++++|++++ .+-=.+=+|.. +
T Consensus 196 ~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQ--------s--- 264 (437)
T COG0621 196 TGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQ--------S--- 264 (437)
T ss_pred EEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccc--------c---
Confidence 4666666766654 33444433333 367888876655 4677777764 22212222210 1
Q ss_pred ccccee---cCCCCchHhHHHHHHHHHHHHHHhCCCCCceEEeeccchhhhhccCCCCCcccccchhhhHHHHHhhhhhc
Q 043682 95 IGNEVF---KGEDTKLYSYLLPAMQTVYKTLVDLGLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVYIQPILSFHSQV 171 (360)
Q Consensus 95 VGNEvl---~~~~~~~~~~Lv~~m~~vr~aL~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~F~~~~~~~l~~~ldfL~~~ 171 (360)
--|++| .|+. + .++.+..++.+|++... +-++|.. +. .|| |+=. +.....+||+.+.
T Consensus 265 Gsd~ILk~M~R~y-t-~e~~~~~i~k~R~~~Pd------~~i~tDi----IV-GFP---gETe----edFe~tl~lv~e~ 324 (437)
T COG0621 265 GSDRILKRMKRGY-T-VEEYLEIIEKLRAARPD------IAISTDI----IV-GFP---GETE----EDFEETLDLVEEV 324 (437)
T ss_pred CCHHHHHHhCCCc-C-HHHHHHHHHHHHHhCCC------ceEeccE----EE-ECC---CCCH----HHHHHHHHHHHHh
Confidence 012333 2332 2 67888888899888764 4455543 21 255 2212 2233445555443
Q ss_pred CCCceeecCCCcc
Q 043682 172 KSPFLINAYPYFA 184 (360)
Q Consensus 172 ~s~~~vNiyPff~ 184 (360)
. +=.+|+++|=.
T Consensus 325 ~-fd~~~~F~YSp 336 (437)
T COG0621 325 R-FDRLHVFKYSP 336 (437)
T ss_pred C-CCEEeeeecCC
Confidence 2 35788888654
No 82
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=21.47 E-value=1.4e+02 Score=32.42 Aligned_cols=41 Identities=12% Similarity=0.125 Sum_probs=29.3
Q ss_pred HHHHHH----HHHhCCCCeEEEccCC------hHHHHHhhcCCCeEEEEeC
Q 043682 40 PSRVSV----LLRSLNISRVKLYDTD------PVVLSAFSNSNVDFIIGLG 80 (360)
Q Consensus 40 ~~~V~~----llks~~i~~VRlY~~d------~~vL~A~~~tgikV~lGv~ 80 (360)
+++|++ ....+|++.+|+||+- ...++++++.|..+...+.
T Consensus 94 ~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~ 144 (596)
T PRK14042 94 ADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAIC 144 (596)
T ss_pred ChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEE
Confidence 566765 3356899999999864 2356777889988776644
No 83
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=21.30 E-value=1.5e+02 Score=31.19 Aligned_cols=37 Identities=14% Similarity=0.173 Sum_probs=25.9
Q ss_pred HHHHHhCCCCeEEEccCC------hHHHHHhhcCCCeEEEEeC
Q 043682 44 SVLLRSLNISRVKLYDTD------PVVLSAFSNSNVDFIIGLG 80 (360)
Q Consensus 44 ~~llks~~i~~VRlY~~d------~~vL~A~~~tgikV~lGv~ 80 (360)
++..+.+|++.+|+|+.- ...++++++.|..+.+.+-
T Consensus 111 v~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~ 153 (468)
T PRK12581 111 ISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIA 153 (468)
T ss_pred HHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEE
Confidence 334456899999999863 3456677889988654443
No 84
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=21.12 E-value=4.1e+02 Score=25.48 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=54.9
Q ss_pred CHHHHHHHHHhCCCCeEEEcc----------CChH-HHHHhhcCCCeEEE-------EeCchhhccccC--cccc-cccc
Q 043682 39 SPSRVSVLLRSLNISRVKLYD----------TDPV-VLSAFSNSNVDFII-------GLGNEYLENMTD--PAKA-QIGN 97 (360)
Q Consensus 39 s~~~V~~llks~~i~~VRlY~----------~d~~-vL~A~~~tgikV~l-------Gv~n~~l~~la~--~~~A-~VGN 97 (360)
+-++...+.|..|++.|-|-+ +++. |-.++.++|+.+.= -+|++++.+=+. ...| .+|-
T Consensus 18 ~v~affa~ak~lg~s~VeiRndl~~~~I~dg~p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA 97 (272)
T COG4130 18 SVEAFFALAKRLGLSKVEIRNDLPSNAIADGTPAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGA 97 (272)
T ss_pred CHHHHHHHHHHcCcceeEEecCCCcccccCCCCHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCC
Confidence 556777788899999998873 1233 44455678887531 122333322110 0111 1665
Q ss_pred ceec-----C----CCCchHhHHHHHHHHHHHHHHhCCCCCc
Q 043682 98 EVFK-----G----EDTKLYSYLLPAMQTVYKTLVDLGLDKQ 130 (360)
Q Consensus 98 Evl~-----~----~~~~~~~~Lv~~m~~vr~aL~~~gl~~~ 130 (360)
..|. + ++..-.+.|+.+++.+|-.|.+.|+.|-
T Consensus 98 ~aLvlcPlNd~s~~~~~vr~~~lv~AlkaLkpil~~~gi~GL 139 (272)
T COG4130 98 KALVLCPLNDGSWPGTAVRREDLVEALKALKPILDEYGITGL 139 (272)
T ss_pred ceEEEEeccCCCCCCcccchHHHHHHHHHhhHHHHHhCcccc
Confidence 5541 1 1111267899999999999999999773
No 85
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=20.96 E-value=1.4e+02 Score=26.80 Aligned_cols=48 Identities=15% Similarity=0.313 Sum_probs=36.1
Q ss_pred CCCCCCHHHHHHHHHhCCC-CeEEEccCC--h----HHHHHhhcCCCeEEEEeCc
Q 043682 34 ANNLPSPSRVSVLLRSLNI-SRVKLYDTD--P----VVLSAFSNSNVDFIIGLGN 81 (360)
Q Consensus 34 ~~~~ps~~~V~~llks~~i-~~VRlY~~d--~----~vL~A~~~tgikV~lGv~n 81 (360)
.+|.|..++..+.|+..|+ -.+|+.++. + +.++.+++.|++|++.+-.
T Consensus 8 ~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG 62 (156)
T TIGR01162 8 DSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAG 62 (156)
T ss_pred HhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3567888888999999998 678998887 3 3344445578999998763
No 86
>PRK07198 hypothetical protein; Validated
Probab=20.79 E-value=87 Score=32.25 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=31.7
Q ss_pred HHHHHhCCCCeE-EEccCChHHHHHhhcCCCeEEEEeC
Q 043682 44 SVLLRSLNISRV-KLYDTDPVVLSAFSNSNVDFIIGLG 80 (360)
Q Consensus 44 ~~llks~~i~~V-RlY~~d~~vL~A~~~tgikV~lGv~ 80 (360)
.+.|+.+||++| |+.+.++.=..++.+.||+|.==++
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 567888999999 9999998888899999999984443
No 87
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=20.67 E-value=3.8e+02 Score=28.60 Aligned_cols=165 Identities=12% Similarity=0.172 Sum_probs=84.5
Q ss_pred cccceecCCCCchHhHHHHHHHHHHHHHHhCCCCCceEEeeccchhhhhccCCCCCcccccchhhhHHHHHhhhhhcCCC
Q 043682 95 IGNEVFKGEDTKLYSYLLPAMQTVYKTLVDLGLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVYIQPILSFHSQVKSP 174 (360)
Q Consensus 95 VGNEvl~~~~~~~~~~Lv~~m~~vr~aL~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~F~~~~~~~l~~~ldfL~~~~s~ 174 (360)
.-||.+.+.+.+ +..++...+.+..-++..+-+. .|+.-|...-|.. |-|-.+.| .+||
T Consensus 144 l~Ne~lv~~p~s-~N~f~~w~~emy~yiK~ldd~h--lvsvGD~~sp~~~-~~pyN~r~----------~vDy------- 202 (587)
T COG3934 144 LRNEPLVEAPIS-VNNFWDWSGEMYAYIKWLDDGH--LVSVGDPASPWPQ-YAPYNARF----------YVDY------- 202 (587)
T ss_pred hcCCccccccCC-hhHHHHHHHHHHHHhhccCCCC--eeecCCcCCcccc-cCCcccce----------eecc-------
Confidence 668877655554 7788888888888888776543 3444443332332 22222222 3555
Q ss_pred ceeecCCCccccCCCCCcccccccccCCCCcccCCCccchhHHHHHHHHHHHHHHHHcCCCCccEEEeeeccCCCCCCCC
Q 043682 175 FLINAYPYFAYKDSPNQVPLDYVLFQPNQGTTDPITNLKYDNMLYAQIDAVYSAMKAMGHTDIEVRISETGWPSKGDENE 254 (360)
Q Consensus 175 ~~vNiyPff~~~~~p~~i~ldyAlf~~~~~~vd~~~~~~y~n~fda~~da~~~al~k~g~~~~~vvVtETGWPS~G~~~~ 254 (360)
-.-|+||+|+.. | |+.- +..|-. ..+|-. ..+ +-+||+.-|-|-|++=..+.
T Consensus 203 a~~hLY~hyd~s--l------~~r~-----------s~~yg~---~~l~i~----~~~--g~~pV~leefGfsta~g~e~ 254 (587)
T COG3934 203 AANHLYRHYDTS--L------VSRV-----------STVYGK---PYLDIP----TIM--GWQPVNLEEFGFSTAFGQEN 254 (587)
T ss_pred ccchhhhhccCC--h------hhee-----------eeeecc---hhhccc----hhc--ccceeeccccCCcccccccc
Confidence 678999977642 2 1110 001111 111110 112 34899999999998843311
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCcceEEEEEeecCCCCCCC----CCCcceeeecCCCceeeee
Q 043682 255 AGATVENAELYNGNLLKRIQQKQGTPGKPSVPVDVYFFALFNENLKPGP----TSERNYGLYYPNGNPVYNI 322 (360)
Q Consensus 255 ~~aS~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE~wK~g~----~~E~~wGlf~~d~~~ky~l 322 (360)
| +..|. ++..+....|. +--.+-|+-|-+--...+ --|-.|||.+.|+.+|+..
T Consensus 255 ---s---~ayfi--w~~lal~~ggd------GaLiwclsdf~~gsdd~ey~w~p~el~fgiIradgpek~~a 312 (587)
T COG3934 255 ---S---PAYFI--WIRLALDTGGD------GALIWCLSDFHLGSDDSEYTWGPMELEFGIIRADGPEKIDA 312 (587)
T ss_pred ---c---chhhh--hhhhHHhhcCC------ceEEEEecCCccCCCCCCCccccccceeeeecCCCchhhhH
Confidence 1 11111 11112211221 123344443331111111 3577899999999999865
No 88
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.48 E-value=8.2e+02 Score=25.20 Aligned_cols=129 Identities=12% Similarity=0.135 Sum_probs=68.9
Q ss_pred CCCCHHHHHHHHH---hCCCCeEEEccCC-------------hHHHHHhhc--CCCeEEEEeCc------hhhccccC-c
Q 043682 36 NLPSPSRVSVLLR---SLNISRVKLYDTD-------------PVVLSAFSN--SNVDFIIGLGN------EYLENMTD-P 90 (360)
Q Consensus 36 ~~ps~~~V~~llk---s~~i~~VRlY~~d-------------~~vL~A~~~--tgikV~lGv~n------~~l~~la~-~ 90 (360)
...++++|++.++ ..|++.|.+.+.| .++|+++.+ .++++-++..+ +.++.+++ .
T Consensus 176 rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~~~~~rir~~~~~p~~l~~ell~~~~~~~ 255 (445)
T PRK14340 176 RSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSRAAPEMRIRFTTSHPKDISESLVRTIAARP 255 (445)
T ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhhcCCCcEEEEccCChhhcCHHHHHHHHhCC
Confidence 3566788876543 4688888885433 246666654 24555555431 12233332 1
Q ss_pred cccc-------ccc-ceec--CCCCchHhHHHHHHHHHHHHHHhCCCCCceEEeeccchhhhhccCCCCCcccccchhhh
Q 043682 91 AKAQ-------IGN-EVFK--GEDTKLYSYLLPAMQTVYKTLVDLGLDKQVIVTSAHSLDILANSFPPSAGSFRQDLAVY 160 (360)
Q Consensus 91 ~~A~-------VGN-Evl~--~~~~~~~~~Lv~~m~~vr~aL~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~F~~~~~~~ 160 (360)
.... =|| ++|. +...+ .++...+++.+|+.+. .|.++|..-. .|| .|-.+.
T Consensus 256 ~g~~~l~iglQSgsd~vLk~m~R~~t-~~~~~~~v~~lr~~~p------gi~i~td~Iv-----GfP-------gET~ed 316 (445)
T PRK14340 256 NICNHIHLPVQSGSSRMLRRMNRGHT-IEEYLEKIALIRSAIP------GVTLSTDLIA-----GFC-------GETEED 316 (445)
T ss_pred CCCCeEEECCCcCCHHHHHhcCCCCC-HHHHHHHHHHHHHhCC------CCEEeccEEE-----ECC-------CCCHHH
Confidence 1111 233 3442 22233 6788888888887642 3567665422 254 122355
Q ss_pred HHHHHhhhhhcCCCceeecCCCcc
Q 043682 161 IQPILSFHSQVKSPFLINAYPYFA 184 (360)
Q Consensus 161 l~~~ldfL~~~~s~~~vNiyPff~ 184 (360)
+.+.++|+.+.+ +=.+|+|+|=.
T Consensus 317 f~~tl~~~~~~~-~~~~~~f~~sp 339 (445)
T PRK14340 317 HRATLSLMEEVR-FDSAFMFYYSV 339 (445)
T ss_pred HHHHHHHHHhcC-CCEEeeEEecC
Confidence 667788887765 33556666443
Done!