Query 043683
Match_columns 256
No_of_seqs 222 out of 2216
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:20:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043683.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043683hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.8 1.1E-20 2.4E-25 191.9 11.1 190 1-195 497-724 (1153)
2 KOG0444 Cytoskeletal regulator 99.5 2.4E-15 5.2E-20 138.8 1.5 179 45-225 101-323 (1255)
3 PLN00113 leucine-rich repeat r 99.5 7.5E-14 1.6E-18 140.2 7.1 189 10-202 40-263 (968)
4 KOG0617 Ras suppressor protein 99.4 1.6E-14 3.4E-19 114.6 -0.3 147 63-214 35-192 (264)
5 KOG0444 Cytoskeletal regulator 99.4 9.5E-14 2.1E-18 128.5 1.2 182 40-223 127-344 (1255)
6 PLN00113 leucine-rich repeat r 99.3 1.6E-12 3.4E-17 130.7 6.1 80 123-202 228-311 (968)
7 KOG0472 Leucine-rich repeat pr 99.2 1.8E-12 3.9E-17 114.6 -0.5 157 44-205 119-303 (565)
8 KOG4194 Membrane glycoprotein 99.2 1.3E-12 2.7E-17 120.2 -2.4 158 33-191 167-381 (873)
9 KOG0617 Ras suppressor protein 99.1 2.1E-12 4.6E-17 102.6 -4.4 148 47-201 41-198 (264)
10 KOG4194 Membrane glycoprotein 99.1 8.2E-11 1.8E-15 108.4 3.4 156 42-204 264-444 (873)
11 PLN03210 Resistant to P. syrin 99.0 6.2E-10 1.3E-14 113.9 5.2 79 122-202 793-872 (1153)
12 PRK15387 E3 ubiquitin-protein 98.9 1.7E-09 3.6E-14 105.3 7.1 38 155-194 383-420 (788)
13 PF14580 LRR_9: Leucine-rich r 98.9 1.3E-09 2.9E-14 88.1 4.8 98 63-187 21-125 (175)
14 KOG0472 Leucine-rich repeat pr 98.9 2.3E-10 4.9E-15 101.5 0.3 116 63-205 414-534 (565)
15 KOG4237 Extracellular matrix p 98.9 2.3E-10 5E-15 101.2 0.3 79 126-205 269-352 (498)
16 PRK15387 E3 ubiquitin-protein 98.9 2E-09 4.3E-14 104.8 4.8 69 131-204 382-450 (788)
17 KOG0618 Serine/threonine phosp 98.8 7E-10 1.5E-14 106.8 -0.0 114 63-187 361-488 (1081)
18 PRK15370 E3 ubiquitin-protein 98.8 3.5E-09 7.7E-14 103.2 4.7 61 131-195 325-386 (754)
19 PRK15370 E3 ubiquitin-protein 98.8 6.6E-09 1.4E-13 101.3 5.8 64 131-198 346-410 (754)
20 PLN03150 hypothetical protein; 98.8 9.1E-09 2E-13 99.0 6.5 106 63-192 420-532 (623)
21 PF14580 LRR_9: Leucine-rich r 98.7 1.6E-08 3.4E-13 81.8 3.2 95 63-184 44-149 (175)
22 KOG0532 Leucine-rich repeat (L 98.6 6.3E-09 1.4E-13 95.9 -0.6 136 63-204 100-239 (722)
23 KOG0618 Serine/threonine phosp 98.6 7E-09 1.5E-13 100.1 -1.1 109 63-172 289-424 (1081)
24 KOG1259 Nischarin, modulator o 98.5 1.8E-08 4E-13 86.7 0.5 113 63-203 286-403 (490)
25 PF13855 LRR_8: Leucine rich r 98.5 1.4E-07 3.1E-12 62.7 3.2 59 83-165 1-60 (61)
26 PF13855 LRR_8: Leucine rich r 98.4 1.2E-07 2.6E-12 63.1 2.2 57 63-143 3-61 (61)
27 KOG0532 Leucine-rich repeat (L 98.4 1.6E-08 3.4E-13 93.3 -3.1 119 63-185 145-270 (722)
28 PLN03150 hypothetical protein; 98.4 4.1E-07 9E-12 87.6 6.3 89 85-197 420-512 (623)
29 KOG1259 Nischarin, modulator o 98.3 7.1E-08 1.5E-12 83.1 -1.5 35 63-98 309-344 (490)
30 KOG4658 Apoptotic ATPase [Sign 98.2 3.2E-07 7E-12 91.0 1.6 97 63-184 547-651 (889)
31 COG4886 Leucine-rich repeat (L 98.2 5.3E-07 1.2E-11 81.9 1.4 97 63-185 118-219 (394)
32 KOG4237 Extracellular matrix p 98.2 6.5E-07 1.4E-11 79.6 1.3 55 44-98 72-131 (498)
33 PF12799 LRR_4: Leucine Rich r 98.1 3E-06 6.4E-11 52.6 3.1 41 131-172 1-41 (44)
34 COG4886 Leucine-rich repeat (L 98.1 1.1E-06 2.4E-11 79.8 1.5 132 63-203 142-281 (394)
35 KOG4658 Apoptotic ATPase [Sign 98.0 1.9E-06 4.1E-11 85.7 1.6 54 51-104 559-616 (889)
36 KOG4579 Leucine-rich repeat (L 98.0 3.5E-07 7.7E-12 70.4 -2.9 76 63-163 55-132 (177)
37 PF12799 LRR_4: Leucine Rich r 98.0 7.1E-06 1.5E-10 50.8 3.4 40 83-147 1-40 (44)
38 KOG1859 Leucine-rich repeat pr 97.8 1.5E-06 3.2E-11 82.7 -4.0 96 63-186 189-290 (1096)
39 cd00116 LRR_RI Leucine-rich re 97.7 2E-05 4.3E-10 69.1 3.1 34 63-96 83-121 (319)
40 KOG4579 Leucine-rich repeat (L 97.7 2.9E-06 6.4E-11 65.4 -2.1 105 63-194 29-141 (177)
41 cd00116 LRR_RI Leucine-rich re 97.7 1.8E-05 3.8E-10 69.4 2.1 122 63-186 110-261 (319)
42 KOG3207 Beta-tubulin folding c 97.6 7.9E-05 1.7E-09 67.3 5.4 50 47-96 146-210 (505)
43 KOG1859 Leucine-rich repeat pr 97.6 5.6E-06 1.2E-10 78.9 -3.1 96 63-186 166-265 (1096)
44 KOG3207 Beta-tubulin folding c 97.5 1.3E-05 2.7E-10 72.4 -1.5 58 128-186 219-282 (505)
45 KOG0531 Protein phosphatase 1, 97.5 6.3E-05 1.4E-09 69.1 2.6 97 63-186 74-173 (414)
46 KOG0531 Protein phosphatase 1, 97.4 4.1E-05 8.9E-10 70.3 -0.1 36 63-98 97-133 (414)
47 PRK15386 type III secretion pr 97.2 0.00032 6.9E-09 63.9 4.0 87 129-218 50-138 (426)
48 KOG1644 U2-associated snRNP A' 97.2 0.00041 8.9E-09 56.9 4.0 77 63-162 66-148 (233)
49 PRK15386 type III secretion pr 97.0 0.00083 1.8E-08 61.2 4.5 60 132-196 73-135 (426)
50 KOG3665 ZYG-1-like serine/thre 96.8 0.0004 8.6E-09 67.7 1.1 76 63-162 124-203 (699)
51 KOG1644 U2-associated snRNP A' 96.8 0.0026 5.7E-08 52.3 5.3 98 63-185 44-150 (233)
52 KOG2123 Uncharacterized conser 96.6 0.00013 2.9E-09 62.6 -3.8 93 63-181 21-123 (388)
53 PF00560 LRR_1: Leucine Rich R 96.5 0.00091 2E-08 34.8 0.6 22 132-153 1-22 (22)
54 KOG2739 Leucine-rich acidic nu 96.4 0.003 6.5E-08 53.7 3.3 101 63-186 45-154 (260)
55 KOG2739 Leucine-rich acidic nu 96.1 0.0042 9.2E-08 52.8 2.6 34 63-96 67-104 (260)
56 KOG3665 ZYG-1-like serine/thre 95.8 0.0029 6.3E-08 61.8 0.8 36 63-98 150-188 (699)
57 KOG1909 Ran GTPase-activating 95.2 0.016 3.5E-07 51.3 3.1 63 125-187 207-282 (382)
58 KOG2982 Uncharacterized conser 95.1 0.0072 1.6E-07 52.7 0.6 36 63-98 73-112 (418)
59 PF13504 LRR_7: Leucine rich r 95.0 0.014 3E-07 28.3 1.2 16 132-147 2-17 (17)
60 smart00369 LRR_TYP Leucine-ric 93.9 0.045 9.7E-07 29.3 1.8 21 130-150 1-21 (26)
61 smart00370 LRR Leucine-rich re 93.9 0.045 9.7E-07 29.3 1.8 21 130-150 1-21 (26)
62 KOG2120 SCF ubiquitin ligase, 93.8 0.012 2.6E-07 51.4 -1.0 56 128-185 310-373 (419)
63 PF00560 LRR_1: Leucine Rich R 93.7 0.033 7.1E-07 28.8 1.0 21 176-197 1-21 (22)
64 KOG1909 Ran GTPase-activating 93.7 0.011 2.3E-07 52.4 -1.6 59 127-186 181-252 (382)
65 KOG2123 Uncharacterized conser 92.8 0.01 2.2E-07 51.3 -3.0 66 128-195 38-108 (388)
66 KOG2982 Uncharacterized conser 92.7 0.04 8.7E-07 48.1 0.5 47 125-171 218-266 (418)
67 KOG2120 SCF ubiquitin ligase, 92.3 0.0066 1.4E-07 52.9 -4.7 39 127-165 230-271 (419)
68 KOG0473 Leucine-rich repeat pr 90.4 0.0054 1.2E-07 51.7 -6.9 57 63-144 67-124 (326)
69 KOG0473 Leucine-rich repeat pr 89.3 0.043 9.4E-07 46.4 -2.4 34 63-96 90-124 (326)
70 smart00364 LRR_BAC Leucine-ric 86.6 0.44 9.6E-06 25.8 1.3 18 131-148 2-19 (26)
71 PF13306 LRR_5: Leucine rich r 85.0 1.3 2.8E-05 33.0 3.7 34 128-162 55-89 (129)
72 COG5238 RNA1 Ran GTPase-activa 81.4 1.2 2.6E-05 38.8 2.4 36 128-163 89-129 (388)
73 smart00365 LRR_SD22 Leucine-ri 79.5 1.7 3.6E-05 23.5 1.8 18 130-147 1-18 (26)
74 KOG3864 Uncharacterized conser 77.9 1 2.2E-05 37.3 0.9 95 2-97 64-166 (221)
75 PF13516 LRR_6: Leucine Rich r 75.6 2.3 5E-05 22.0 1.7 17 82-98 1-17 (24)
76 KOG3864 Uncharacterized conser 74.9 1.5 3.1E-05 36.4 1.1 31 68-98 85-116 (221)
77 PF07725 LRR_3: Leucine Rich R 67.6 2.6 5.7E-05 21.2 0.7 18 84-101 1-18 (20)
78 PF13306 LRR_5: Leucine rich r 63.2 18 0.00038 26.6 4.8 54 127-183 8-66 (129)
79 smart00368 LRR_RI Leucine rich 61.0 6.5 0.00014 21.3 1.5 15 83-97 2-16 (28)
80 smart00367 LRR_CC Leucine-rich 57.9 8.1 0.00017 20.4 1.5 12 176-187 3-14 (26)
81 COG5238 RNA1 Ran GTPase-activa 57.5 16 0.00034 32.1 3.9 85 81-186 28-131 (388)
82 KOG1947 Leucine rich repeat pr 57.5 4.4 9.6E-05 37.1 0.7 60 129-188 241-308 (482)
83 KOG3763 mRNA export factor TAP 55.7 10 0.00022 36.1 2.7 78 81-181 216-307 (585)
84 TIGR00864 PCC polycystin catio 25.2 41 0.00088 38.3 1.7 30 67-96 1-32 (2740)
85 KOG4341 F-box protein containi 20.8 50 0.0011 30.6 1.1 32 63-94 296-331 (483)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=1.1e-20 Score=191.89 Aligned_cols=190 Identities=33% Similarity=0.544 Sum_probs=133.1
Q ss_pred ChhhhhhhhcccCCCCccccCCcccHHHHHhhccccCccceeEeeCCCCeeeecChHHHHhh------------------
Q 043683 1 MGWEIVRQESMNDLGKRSWLWHHEDSIKFLTSNAGRILIEGICLGMSKVKEIHLNPDTFRKM------------------ 62 (256)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~l~~l~~~~l~~~~f~~l------------------ 62 (256)
|||+||++++ .+||+|+|+|.++|++++++.++++..++++.+|++....+.+..++|.+|
T Consensus 497 ~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~ 575 (1153)
T PLN03210 497 MGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKE 575 (1153)
T ss_pred HHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccccccc
Confidence 8999999998 699999999999999999999999999999999998888888888888777
Q ss_pred ---------------hhhhhccCCCCCccCCccccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc--cCcccccc
Q 043683 63 ---------------LRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH--LNTLVLPE 125 (256)
Q Consensus 63 ---------------L~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~--L~~L~lp~ 125 (256)
|+.|++.+|++..+|..+.+.+|++|++++|+++.+|.+...+ ..+..+.+.++ ++ .+|
T Consensus 576 ~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l-~~Lk~L~Ls~~~~l~--~ip- 651 (1153)
T PLN03210 576 VRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSL-TGLRNIDLRGSKNLK--EIP- 651 (1153)
T ss_pred ceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccC-CCCCEEECCCCCCcC--cCC-
Confidence 3444555666777777777788888899888888775443331 11111111111 11 123
Q ss_pred ccCCCCCCcEEEcc-CCCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccch
Q 043683 126 NIGQLSSLGKLDLQ-KNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLF 195 (256)
Q Consensus 126 ~~~~l~~L~~L~l~-~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~ 195 (256)
.++.+++|++|+++ |+.+..+|..++.+++|+.|++++|+.++.+|.. +++|++|++++|..+..+|...
T Consensus 652 ~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~ 724 (1153)
T PLN03210 652 DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDIS 724 (1153)
T ss_pred ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccccc
Confidence 24556667777766 3445566666666677777777666666666654 5666666666666665555443
No 2
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.52 E-value=2.4e-15 Score=138.85 Aligned_cols=179 Identities=19% Similarity=0.344 Sum_probs=115.0
Q ss_pred eCCCCeeeecChHHHHhh---------hhhhhccCCCCCccCCcc--ccCCccEEeCcCCcchhhHHHHHHh--------
Q 043683 45 GMSKVKEIHLNPDTFRKM---------LRYFHWHGCPLKSLPSNI--HLEKLVLLEMPHSNIQQLLDSVRGI-------- 105 (256)
Q Consensus 45 ~l~~l~~~~l~~~~f~~l---------L~~L~ls~n~l~~lp~~~--~l~~L~~L~L~~n~l~~l~~~L~~L-------- 105 (256)
.+..+.+++++.+.++.. +-+|++|+|+|..+|..+ +++.|-+||||+|++..+++.++.|
T Consensus 101 ~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKL 180 (1255)
T ss_pred ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhc
Confidence 344444555555555444 455666666666666653 6666667777777666665554443
Q ss_pred ---------cccCCCCc------hhhccCcc-ccccccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcc
Q 043683 106 ---------LTRTPNTP------LGQHLNTL-VLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQS 169 (256)
Q Consensus 106 ---------l~~lp~~~------l~~~L~~L-~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~ 169 (256)
+..+|... +++-=+.+ .+|.++..+.+|..+|+|+|++..+|+.+.++.+|+.|++|+ |.+..
T Consensus 181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~-N~ite 259 (1255)
T KOG0444|consen 181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSG-NKITE 259 (1255)
T ss_pred CCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCc-Cceee
Confidence 22233210 00001111 678888999999999999999999999999999999999998 55666
Q ss_pred cCCC---CCCCcEEeccCcccccccccchhchhhhhhcc------CCcccHHHHHHhHHHHHhhh
Q 043683 170 LPKL---PCKLHELDAHHCTALESLSGLFSSFEARTQYF------DLRILEDALQETQLLEAALW 225 (256)
Q Consensus 170 lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l~------~l~~~~~~~~~~~~~~~~~~ 225 (256)
+... ..+|+.|+++.| .+..+|..+..++.++.|. .+..+|++|.++..++....
T Consensus 260 L~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~a 323 (1255)
T KOG0444|consen 260 LNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHA 323 (1255)
T ss_pred eeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHh
Confidence 6543 567777888774 4677777777777776553 33556777776665554433
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.46 E-value=7.5e-14 Score=140.22 Aligned_cols=189 Identities=19% Similarity=0.277 Sum_probs=92.8
Q ss_pred cccCCCCccccCCc-ccHHHHHhhccc--cCccceeEeeCCCCeeeecChHHHHhh--hhhhhccCCCCC-ccCCcc--c
Q 043683 10 SMNDLGKRSWLWHH-EDSIKFLTSNAG--RILIEGICLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLK-SLPSNI--H 81 (256)
Q Consensus 10 ~~~~~~~~~~l~~~-~~~~~~l~~~~~--~~~~~~~~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~-~lp~~~--~ 81 (256)
+..+|+++.+.|.. .+.+.+ .+..- ...+.. +|++........+..|..+ |++|++++|.+. .+|..+ .
T Consensus 40 ~~~~~~~~~~~w~~~~~~c~w-~gv~c~~~~~v~~--L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~ 116 (968)
T PLN00113 40 SINDPLKYLSNWNSSADVCLW-QGITCNNSSRVVS--IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTT 116 (968)
T ss_pred hCCCCcccCCCCCCCCCCCcC-cceecCCCCcEEE--EEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhcc
Confidence 33468888888965 444443 22221 233443 4444443333334556666 777777777754 677664 6
Q ss_pred cCCccEEeCcCCcchhh-----HHHHHHh------c-ccCCCCchhhc--cCcc---------ccccccCCCCCCcEEEc
Q 043683 82 LEKLVLLEMPHSNIQQL-----LDSVRGI------L-TRTPNTPLGQH--LNTL---------VLPENIGQLSSLGKLDL 138 (256)
Q Consensus 82 l~~L~~L~L~~n~l~~l-----~~~L~~L------l-~~lp~~~l~~~--L~~L---------~lp~~~~~l~~L~~L~l 138 (256)
+++|++|++++|.+.+. +++|+.| + +.+|.. ++.+ |+.| .+|..++++++|++|++
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred CCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 77777777777766532 1222222 0 011110 1111 2222 23444555555555555
Q ss_pred cCCCCc-cccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhchhhhh
Q 043683 139 QKNNFE-RIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEART 202 (256)
Q Consensus 139 ~~n~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~ 202 (256)
++|.+. .+|+.++.+++|+.|++++|...+.+|.. +++|++|++++|...+.+|..++++++++
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 263 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence 555544 34455555555555555554433344432 44555555555444344444444444443
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.43 E-value=1.6e-14 Score=114.60 Aligned_cols=147 Identities=24% Similarity=0.394 Sum_probs=101.6
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCcc-ccccccCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTL-VLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L-~lp~~~~~l~~L~~L~l~~ 140 (256)
++.|.+|+|+++.+|+.| .+.+|+.|++++|++++++.++.++ ..+..+.++ +..| .+|..||.++.|+.||+++
T Consensus 35 ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl-~klr~lnvg--mnrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 35 ITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSL-PKLRILNVG--MNRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhc-hhhhheecc--hhhhhcCccccCCCchhhhhhccc
Confidence 777888888888888888 8888888888888888875554442 000000000 0111 3488888888899999888
Q ss_pred CCCc--cccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhchhhhhhcc----CCcccH
Q 043683 141 NNFE--RIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEARTQYF----DLRILE 211 (256)
Q Consensus 141 n~l~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l~----~l~~~~ 211 (256)
|++. .+|..|..++.|+.|++++ +.+..+|.. +++|+.|.+..+. +-++|..++.++.+.++. .+..+|
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccceeeecC
Confidence 8876 6787777788888888887 556677765 7778888887765 556788888777777553 344444
Q ss_pred HHH
Q 043683 212 DAL 214 (256)
Q Consensus 212 ~~~ 214 (256)
..+
T Consensus 190 pel 192 (264)
T KOG0617|consen 190 PEL 192 (264)
T ss_pred hhh
Confidence 443
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.38 E-value=9.5e-14 Score=128.45 Aligned_cols=182 Identities=21% Similarity=0.333 Sum_probs=122.0
Q ss_pred ceeEeeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh----HHHHHHh-------
Q 043683 40 EGICLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL----LDSVRGI------- 105 (256)
Q Consensus 40 ~~~~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l----~~~L~~L------- 105 (256)
-.++++++.+.+-.+...-|-++ |-+||+|+|.+..+|+.+ .+.+|+.|.|++|.+... ++.+++|
T Consensus 127 n~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~ 206 (1255)
T KOG0444|consen 127 NSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSN 206 (1255)
T ss_pred CcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccc
Confidence 34678999998888888889888 999999999999999999 999999999999987644 3333333
Q ss_pred ----cccCCCCchhhc--cCcc--------ccccccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccC
Q 043683 106 ----LTRTPNTPLGQH--LNTL--------VLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLP 171 (256)
Q Consensus 106 ----l~~lp~~~l~~~--L~~L--------~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp 171 (256)
+.++|.. +..+ |..+ .+|+.+-++.+|+.|+||+|+++.+...++.-.+|+.|++|. |.+..+|
T Consensus 207 TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP 284 (1255)
T KOG0444|consen 207 TQRTLDNIPTS-LDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSR-NQLTVLP 284 (1255)
T ss_pred ccchhhcCCCc-hhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhcccc-chhccch
Confidence 3344431 1111 1111 446777777777777777777777766666667777777776 4566777
Q ss_pred CC---CCCCcEEeccCccc-ccccccchhchhhhhhc----cCCcccHHHHHHhHHHHHh
Q 043683 172 KL---PCKLHELDAHHCTA-LESLSGLFSSFEARTQY----FDLRILEDALQETQLLEAA 223 (256)
Q Consensus 172 ~~---l~~L~~L~l~~~~~-l~~~p~~~~~l~~l~~l----~~l~~~~~~~~~~~~~~~~ 223 (256)
+. ++.|+.|++.+|.. .+-+|++++.+..++.+ +++...|+++..+..+...
T Consensus 285 ~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 285 DAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKL 344 (1255)
T ss_pred HHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHh
Confidence 65 56666666655432 34566666666666543 2445555555555444433
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.32 E-value=1.6e-12 Score=130.72 Aligned_cols=80 Identities=30% Similarity=0.338 Sum_probs=38.8
Q ss_pred cccccCCCCCCcEEEccCCCCc-cccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhch
Q 043683 123 LPENIGQLSSLGKLDLQKNNFE-RIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSF 198 (256)
Q Consensus 123 lp~~~~~l~~L~~L~l~~n~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l 198 (256)
+|..++.+++|++|++++|+++ .+|..++++++|+.|++++|...+.+|.. +++|++|++++|.....+|..+.++
T Consensus 228 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 307 (968)
T PLN00113 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307 (968)
T ss_pred CChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC
Confidence 4445555555555555555554 44455555555555555544433344432 4455555555544444444444444
Q ss_pred hhhh
Q 043683 199 EART 202 (256)
Q Consensus 199 ~~l~ 202 (256)
++++
T Consensus 308 ~~L~ 311 (968)
T PLN00113 308 QNLE 311 (968)
T ss_pred CCCc
Confidence 4333
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.20 E-value=1.8e-12 Score=114.58 Aligned_cols=157 Identities=25% Similarity=0.334 Sum_probs=113.4
Q ss_pred eeCCCCeeeecChHHHHhh-hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh------HHHHHHh------cccC
Q 043683 44 LGMSKVKEIHLNPDTFRKM-LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL------LDSVRGI------LTRT 109 (256)
Q Consensus 44 l~l~~l~~~~l~~~~f~~l-L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l------~~~L~~L------l~~l 109 (256)
++++..+..++.+..++-. +..++..+|++..+|+++ .+.+|..+++.+|+++.+ |+.++++ ++.+
T Consensus 119 l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tl 198 (565)
T KOG0472|consen 119 LDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETL 198 (565)
T ss_pred hhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcC
Confidence 4555555555555544433 777777788888888877 778888888888887766 4444444 4555
Q ss_pred CCCchhhc--cCcc--------ccccccCCCCCCcEEEccCCCCcccccccc-CCCCCCEEeeccCcCCcccCCC---CC
Q 043683 110 PNTPLGQH--LNTL--------VLPENIGQLSSLGKLDLQKNNFERIPESVI-QLSKLGRLCLRYWERLQSLPKL---PC 175 (256)
Q Consensus 110 p~~~l~~~--L~~L--------~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~-~l~~L~~L~l~~~~~l~~lp~~---l~ 175 (256)
|.- ++.. |.-| .+| +|+++..|.+++++.|+++-+|++++ ++.++..||+.+ ++++++|+. +.
T Consensus 199 P~~-lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLr 275 (565)
T KOG0472|consen 199 PPE-LGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLR 275 (565)
T ss_pred Chh-hcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCchHHHHhh
Confidence 532 2222 1111 556 78888888888888888888897765 899999999998 779999997 78
Q ss_pred CCcEEeccCcccccccccchhchhhhhhcc
Q 043683 176 KLHELDAHHCTALESLSGLFSSFEARTQYF 205 (256)
Q Consensus 176 ~L~~L~l~~~~~l~~~p~~~~~l~~l~~l~ 205 (256)
+|.+||+++|. +..+|..++++ .+..+.
T Consensus 276 sL~rLDlSNN~-is~Lp~sLgnl-hL~~L~ 303 (565)
T KOG0472|consen 276 SLERLDLSNND-ISSLPYSLGNL-HLKFLA 303 (565)
T ss_pred hhhhhcccCCc-cccCCcccccc-eeeehh
Confidence 99999999854 88899999998 566543
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.19 E-value=1.3e-12 Score=120.16 Aligned_cols=158 Identities=20% Similarity=0.253 Sum_probs=102.6
Q ss_pred ccccCccceeEeeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCcc--ccCCccEEeCcCCcchhh----HHHHHH
Q 043683 33 NAGRILIEGICLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSNI--HLEKLVLLEMPHSNIQQL----LDSVRG 104 (256)
Q Consensus 33 ~~~~~~~~~~~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~~--~l~~L~~L~L~~n~l~~l----~~~L~~ 104 (256)
+.+..++.-..++++.+++..+....|.++ |..|.|+.|.++.+|... .|++|+.|+|..|+|+.+ |.+|.+
T Consensus 167 ~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~S 246 (873)
T KOG4194|consen 167 PSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPS 246 (873)
T ss_pred CCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchh
Confidence 334444444567778888888888888887 888999999999999764 699999999999988755 444333
Q ss_pred ---h------cccCCCCchhhc-----------------------cCcc------------ccccccCCCCCCcEEEccC
Q 043683 105 ---I------LTRTPNTPLGQH-----------------------LNTL------------VLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 105 ---L------l~~lp~~~l~~~-----------------------L~~L------------~lp~~~~~l~~L~~L~l~~ 140 (256)
| +..+.+-.+..+ |++| .=++++...++|++|+|+.
T Consensus 247 l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~ 326 (873)
T KOG4194|consen 247 LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS 326 (873)
T ss_pred hhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccc
Confidence 3 222332111111 2222 1245556667777777777
Q ss_pred CCCccccc-cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccccccc
Q 043683 141 NNFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESL 191 (256)
Q Consensus 141 n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~ 191 (256)
|+++++++ .+..|..|++|++++ |.+..+.+. +++|+.||++.|..-..+
T Consensus 327 N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 327 NRITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSNELSWCI 381 (873)
T ss_pred cccccCChhHHHHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence 77777764 566777777777776 445555544 667777777766543333
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.10 E-value=2.1e-12 Score=102.56 Aligned_cols=148 Identities=28% Similarity=0.375 Sum_probs=106.5
Q ss_pred CCCeeeecChHHHHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCc---hhhc-cC
Q 043683 47 SKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTP---LGQH-LN 119 (256)
Q Consensus 47 ~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~---l~~~-L~ 119 (256)
+.++...+.++ ...+ |++|++++|+++++|..+ .+++|+.|++..|++..++.+. +.+|.+. +... |.
T Consensus 41 SHNKl~~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf----gs~p~levldltynnl~ 115 (264)
T KOG0617|consen 41 SHNKLTVVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF----GSFPALEVLDLTYNNLN 115 (264)
T ss_pred ccCceeecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc----CCCchhhhhhccccccc
Confidence 33333334333 3444 899999999999999999 8999999999988876542111 1122111 1111 22
Q ss_pred ccccccccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchh
Q 043683 120 TLVLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFS 196 (256)
Q Consensus 120 ~L~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~ 196 (256)
+=.+|..|..++.|+-|+++.|.|+-+|++++++++|+.|.+.+ +.+-++|.. ++.|+.|.++++ .+..+|..++
T Consensus 116 e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqgn-rl~vlppel~ 193 (264)
T KOG0617|consen 116 ENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQGN-RLTVLPPELA 193 (264)
T ss_pred cccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHHHHHhcccc-eeeecChhhh
Confidence 22568888888888889999999999999999999999999988 446678876 888899999985 5888998888
Q ss_pred chhhh
Q 043683 197 SFEAR 201 (256)
Q Consensus 197 ~l~~l 201 (256)
++.-+
T Consensus 194 ~l~l~ 198 (264)
T KOG0617|consen 194 NLDLV 198 (264)
T ss_pred hhhhh
Confidence 76543
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.06 E-value=8.2e-11 Score=108.45 Aligned_cols=156 Identities=21% Similarity=0.304 Sum_probs=96.5
Q ss_pred eEeeCCCCeeeecChHHHHhh----------hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhh----HHHHHHh
Q 043683 42 ICLGMSKVKEIHLNPDTFRKM----------LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQL----LDSVRGI 105 (256)
Q Consensus 42 ~~l~l~~l~~~~l~~~~f~~l----------L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l----~~~L~~L 105 (256)
.+..+.+++.+++.-+....+ |+.|++|+|.|..+-.+ . ..++|.+|+|++|+|+++ +..|..|
T Consensus 264 ~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 264 AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL 343 (873)
T ss_pred ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence 334445555555555444433 77777777777766433 3 567777777777777665 2222221
Q ss_pred cccCCCCchhhc-cCccccccccCCCCCCcEEEccCCCCc-ccc---ccccCCCCCCEEeeccCcCCcccCCC----CCC
Q 043683 106 LTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQKNNFE-RIP---ESVIQLSKLGRLCLRYWERLQSLPKL----PCK 176 (256)
Q Consensus 106 l~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~n~l~-~lp---~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~ 176 (256)
..+.++++ +.++ --..|..+.+|++|||+.|.++ .|- ..+.++++|+.|++.+ |.++++|.- +.+
T Consensus 344 ----e~LnLs~Nsi~~l-~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~ 417 (873)
T KOG4194|consen 344 ----EELNLSHNSIDHL-AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEA 417 (873)
T ss_pred ----hhhcccccchHHH-HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcc
Confidence 00000100 0000 0234567888999999999887 443 2567789999999988 668888864 888
Q ss_pred CcEEeccCcccccccccchhchhhhhhc
Q 043683 177 LHELDAHHCTALESLSGLFSSFEARTQY 204 (256)
Q Consensus 177 L~~L~l~~~~~l~~~p~~~~~l~~l~~l 204 (256)
|++|++.+|..-..-|+.|..+ .|.+|
T Consensus 418 LE~LdL~~NaiaSIq~nAFe~m-~Lk~L 444 (873)
T KOG4194|consen 418 LEHLDLGDNAIASIQPNAFEPM-ELKEL 444 (873)
T ss_pred cceecCCCCcceeecccccccc-hhhhh
Confidence 9999998877666667777766 45543
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.95 E-value=6.2e-10 Score=113.88 Aligned_cols=79 Identities=24% Similarity=0.449 Sum_probs=56.3
Q ss_pred ccccccCCCCCCcEEEcc-CCCCccccccccCCCCCCEEeeccCcCCcccCCCCCCCcEEeccCcccccccccchhchhh
Q 043683 122 VLPENIGQLSSLGKLDLQ-KNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCTALESLSGLFSSFEA 200 (256)
Q Consensus 122 ~lp~~~~~l~~L~~L~l~-~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~L~~L~l~~~~~l~~~p~~~~~l~~ 200 (256)
.+|.+++++++|+.|+++ |+.++.+|..+ ++++|+.|++++|+.++.+|....+|+.|+++++ .+..+|.++..+++
T Consensus 793 ~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n-~i~~iP~si~~l~~ 870 (1153)
T PLN03210 793 ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT-GIEEVPWWIEKFSN 870 (1153)
T ss_pred ccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCC-CCccChHHHhcCCC
Confidence 468889999999999998 56788898766 7889999999988888777765555555555553 34455555544444
Q ss_pred hh
Q 043683 201 RT 202 (256)
Q Consensus 201 l~ 202 (256)
+.
T Consensus 871 L~ 872 (1153)
T PLN03210 871 LS 872 (1153)
T ss_pred CC
Confidence 43
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.93 E-value=1.7e-09 Score=105.29 Aligned_cols=38 Identities=42% Similarity=0.475 Sum_probs=18.7
Q ss_pred CCCEEeeccCcCCcccCCCCCCCcEEeccCcccccccccc
Q 043683 155 KLGRLCLRYWERLQSLPKLPCKLHELDAHHCTALESLSGL 194 (256)
Q Consensus 155 ~L~~L~l~~~~~l~~lp~~l~~L~~L~l~~~~~l~~~p~~ 194 (256)
+|+.|++++ +.+..+|..+++|+.|++++|. +..+|..
T Consensus 383 ~L~~LdLs~-N~Lt~LP~l~s~L~~LdLS~N~-LssIP~l 420 (788)
T PRK15387 383 GLKELIVSG-NRLTSLPVLPSELKELMVSGNR-LTSLPML 420 (788)
T ss_pred ccceEEecC-CcccCCCCcccCCCEEEccCCc-CCCCCcc
Confidence 445555554 2344455444555555555543 4445543
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=1.3e-09 Score=88.09 Aligned_cols=98 Identities=28% Similarity=0.408 Sum_probs=37.2
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN 141 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n 141 (256)
++.|++++|.|+.+..-- .+.+|+.|++++|.|+.+ +.+..++.|++|++++|
T Consensus 21 ~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--------------------------~~l~~L~~L~~L~L~~N 74 (175)
T PF14580_consen 21 LRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--------------------------EGLPGLPRLKTLDLSNN 74 (175)
T ss_dssp ---------------S--TT-TT--EEE-TTS--S----------------------------TT----TT--EEE--SS
T ss_pred cccccccccccccccchhhhhcCCCEEECCCCCCccc--------------------------cCccChhhhhhcccCCC
Confidence 788999999988875332 578899999999988764 23466788999999999
Q ss_pred CCccccccc-cCCCCCCEEeeccCcCCcccCCC-----CCCCcEEeccCccc
Q 043683 142 NFERIPESV-IQLSKLGRLCLRYWERLQSLPKL-----PCKLHELDAHHCTA 187 (256)
Q Consensus 142 ~l~~lp~~i-~~l~~L~~L~l~~~~~l~~lp~~-----l~~L~~L~l~~~~~ 187 (256)
+++++++.+ ..+++|+.|++++ |.+..+.+. +++|++|++.+|+.
T Consensus 75 ~I~~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 75 RISSISEGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp ---S-CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CCCccccchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 999887655 4688999999987 556666554 78889999988774
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.91 E-value=2.3e-10 Score=101.49 Aligned_cols=116 Identities=22% Similarity=0.377 Sum_probs=97.0
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN 141 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n 141 (256)
...+.+++|.++.+|..+ .+++|..|++++|-+-.+ |.+++.+..|+.|+++.|
T Consensus 414 vT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~L-------------------------P~e~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 414 VTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDL-------------------------PEEMGSLVRLQTLNLSFN 468 (565)
T ss_pred HHHHHhhcCccccchHHHHhhhcceeeecccchhhhc-------------------------chhhhhhhhhheeccccc
Confidence 667788888888888888 899999999999987654 888899999999999999
Q ss_pred CCccccccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccccchhchhhhhhcc
Q 043683 142 NFERIPESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSGLFSSFEARTQYF 205 (256)
Q Consensus 142 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l~ 205 (256)
+|..+|+.+..+..|+.+-.++ +.+++++.. +.+|..||+.+| .+..+|..++++++++.+.
T Consensus 469 rFr~lP~~~y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLe 534 (565)
T KOG0472|consen 469 RFRMLPECLYELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLE 534 (565)
T ss_pred ccccchHHHhhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCCC-chhhCChhhccccceeEEE
Confidence 9999998887777777665554 778888876 778899999875 4889999999999888654
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.91 E-value=2.3e-10 Score=101.16 Aligned_cols=79 Identities=20% Similarity=0.227 Sum_probs=66.5
Q ss_pred ccCCCCCCcEEEccCCCCcccc-ccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccccchhchhh
Q 043683 126 NIGQLSSLGKLDLQKNNFERIP-ESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSGLFSSFEA 200 (256)
Q Consensus 126 ~~~~l~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~~~~~l~~ 200 (256)
.|..+++|++|++++|+++.|- .+|.++.++++|.+.. |++..+... +..|+.|++.+|......|..|..+.+
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS 347 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence 3688999999999999999886 5899999999999998 557777654 789999999998866667888888777
Q ss_pred hhhcc
Q 043683 201 RTQYF 205 (256)
Q Consensus 201 l~~l~ 205 (256)
+..++
T Consensus 348 l~~l~ 352 (498)
T KOG4237|consen 348 LSTLN 352 (498)
T ss_pred eeeee
Confidence 77655
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.86 E-value=2e-09 Score=104.75 Aligned_cols=69 Identities=29% Similarity=0.347 Sum_probs=55.6
Q ss_pred CCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCCCCCCcEEeccCcccccccccchhchhhhhhc
Q 043683 131 SSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCTALESLSGLFSSFEARTQY 204 (256)
Q Consensus 131 ~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l 204 (256)
.+|+.|++++|+++.+|.. .++|+.|++++ +.+..+|..+.+|+.|++++|. +..+|..+.++..+..+
T Consensus 382 ~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~-N~LssIP~l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~L 450 (788)
T PRK15387 382 SGLKELIVSGNRLTSLPVL---PSELKELMVSG-NRLTSLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTV 450 (788)
T ss_pred cccceEEecCCcccCCCCc---ccCCCEEEccC-CcCCCCCcchhhhhhhhhccCc-ccccChHHhhccCCCeE
Confidence 4688999999999988854 36789999998 4578898877789999999865 77899988887766644
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.81 E-value=7e-10 Score=106.80 Aligned_cols=114 Identities=25% Similarity=0.410 Sum_probs=67.7
Q ss_pred hhhhhccCCCCCc--cCCccccCCccEEeCcCCcchhh-------HHHHHHhcccCCCCchhhc-cCccccccccCCCCC
Q 043683 63 LRYFHWHGCPLKS--LPSNIHLEKLVLLEMPHSNIQQL-------LDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSS 132 (256)
Q Consensus 63 L~~L~ls~n~l~~--lp~~~~l~~L~~L~L~~n~l~~l-------~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~ 132 (256)
|+.|++.+|.+++ +|.-.+..+|+.|+|++|++..+ |+.|+.| .++++ |+ .+|..+..+..
T Consensus 361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL-------~LSGNkL~--~Lp~tva~~~~ 431 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEEL-------NLSGNKLT--TLPDTVANLGR 431 (1081)
T ss_pred HHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHH-------hcccchhh--hhhHHHHhhhh
Confidence 6666666666543 33222666777777777766544 2222222 11111 11 12566677777
Q ss_pred CcEEEccCCCCccccccccCCCCCCEEeeccCcCCcc--cCCC-C-CCCcEEeccCccc
Q 043683 133 LGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQS--LPKL-P-CKLHELDAHHCTA 187 (256)
Q Consensus 133 L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~--lp~~-l-~~L~~L~l~~~~~ 187 (256)
|++|...+|++..+| ++..+++|+.+|++. |.++. +|.. + +.|++||+++|..
T Consensus 432 L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 432 LHTLRAHSNQLLSFP-ELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hHHHhhcCCceeech-hhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 888777777887777 777788888888875 33443 2333 3 6788888887764
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.81 E-value=3.5e-09 Score=103.17 Aligned_cols=61 Identities=23% Similarity=0.346 Sum_probs=32.1
Q ss_pred CCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC-CCCCcEEeccCcccccccccch
Q 043683 131 SSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL-PCKLHELDAHHCTALESLSGLF 195 (256)
Q Consensus 131 ~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-l~~L~~L~l~~~~~l~~~p~~~ 195 (256)
++|++|++++|.++.+|..+. ++|+.|++++| .+..+|.. +++|++|++++|. +..+|..+
T Consensus 325 ~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N-~L~~LP~~lp~~L~~LdLs~N~-Lt~LP~~l 386 (754)
T PRK15370 325 PGLKTLEAGENALTSLPASLP--PELQVLDVSKN-QITVLPETLPPTITTLDVSRNA-LTNLPENL 386 (754)
T ss_pred ccceeccccCCccccCChhhc--CcccEEECCCC-CCCcCChhhcCCcCEEECCCCc-CCCCCHhH
Confidence 355566666666655554442 45666666653 34455543 4456666665543 44455433
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.79 E-value=6.6e-09 Score=101.29 Aligned_cols=64 Identities=27% Similarity=0.392 Sum_probs=45.8
Q ss_pred CCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC-CCCCcEEeccCcccccccccchhch
Q 043683 131 SSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL-PCKLHELDAHHCTALESLSGLFSSF 198 (256)
Q Consensus 131 ~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-l~~L~~L~l~~~~~l~~~p~~~~~l 198 (256)
++|+.|++++|+++.+|..+. .+|+.|++++| .+..+|.. ..+|+.|++++|. +..+|..+.++
T Consensus 346 ~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N-~Lt~LP~~l~~sL~~LdLs~N~-L~~LP~sl~~~ 410 (754)
T PRK15370 346 PELQVLDVSKNQITVLPETLP--PTITTLDVSRN-ALTNLPENLPAALQIMQASRNN-LVRLPESLPHF 410 (754)
T ss_pred CcccEEECCCCCCCcCChhhc--CCcCEEECCCC-cCCCCCHhHHHHHHHHhhccCC-cccCchhHHHH
Confidence 578888888888888876553 57888888874 46677766 5578888888754 66777765544
No 20
>PLN03150 hypothetical protein; Provisional
Probab=98.78 E-value=9.1e-09 Score=99.01 Aligned_cols=106 Identities=25% Similarity=0.343 Sum_probs=75.7
Q ss_pred hhhhhccCCCCC-ccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLK-SLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~-~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~ 140 (256)
++.|+|++|.+. .+|..+ .+++|+.|+|++|.+.+ .+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g------------------------~iP~~~~~l~~L~~LdLs~ 475 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG------------------------NIPPSLGSITSLEVLDLSY 475 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC------------------------cCChHHhCCCCCCEEECCC
Confidence 556677777754 567777 77888888888877764 2466677888888888888
Q ss_pred CCCc-cccccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccc
Q 043683 141 NNFE-RIPESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLS 192 (256)
Q Consensus 141 n~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p 192 (256)
|+++ .+|+.++++++|+.|++++|+..+.+|.. ..++..+++.+|..+...|
T Consensus 476 N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 476 NSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 8887 67778888888888888887766677765 2345667777666554444
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.65 E-value=1.6e-08 Score=81.82 Aligned_cols=95 Identities=22% Similarity=0.307 Sum_probs=47.9
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCcccccccc-CCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENI-GQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~-~~l~~L~~L~l~~ 140 (256)
|+.|++++|.++.++ ++ .+++|+.|++++|.|+.+ ...+ ..+++|++|++++
T Consensus 44 L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i-------------------------~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 44 LEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSI-------------------------SEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp --EEE-TTS--S--T-T----TT--EEE--SS---S--------------------------CHHHHHH-TT--EEE-TT
T ss_pred CCEEECCCCCCcccc-CccChhhhhhcccCCCCCCcc-------------------------ccchHHhCCcCCEEECcC
Confidence 899999999999997 46 899999999999999864 2222 2478999999999
Q ss_pred CCCccccc--cccCCCCCCEEeeccCcCCcccCCC-------CCCCcEEeccC
Q 043683 141 NNFERIPE--SVIQLSKLGRLCLRYWERLQSLPKL-------PCKLHELDAHH 184 (256)
Q Consensus 141 n~l~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~-------l~~L~~L~l~~ 184 (256)
|++..+.+ .+..+++|+.|++.+|+ +..-+.- +++|+.||-..
T Consensus 98 N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 98 NKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp S---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence 99987763 57789999999999965 4444542 78899998654
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.60 E-value=6.3e-09 Score=95.87 Aligned_cols=136 Identities=26% Similarity=0.417 Sum_probs=87.0
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~ 140 (256)
|..+.+.+|.+..+|..+ .+..|.+|+|+.|++..++..+-.| -++.+-+.++ ++ .+|+.++.+..|..||.++
T Consensus 100 Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l--pLkvli~sNNkl~--~lp~~ig~~~tl~~ld~s~ 175 (722)
T KOG0532|consen 100 LESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL--PLKVLIVSNNKLT--SLPEEIGLLPTLAHLDVSK 175 (722)
T ss_pred HHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcC--cceeEEEecCccc--cCCcccccchhHHHhhhhh
Confidence 666677777777777777 7777777777777766542222111 0000000000 11 3377777777888888888
Q ss_pred CCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccchhchhhhhhc
Q 043683 141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFEARTQY 204 (256)
Q Consensus 141 n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l 204 (256)
|.+..+|..++.+.+|+.|.+.. +.+..+|.. --.|..||++ |+++..+|-.|.+|+.|+.+
T Consensus 176 nei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~LpLi~lDfS-cNkis~iPv~fr~m~~Lq~l 239 (722)
T KOG0532|consen 176 NEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSLPLIRLDFS-CNKISYLPVDFRKMRHLQVL 239 (722)
T ss_pred hhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCCceeeeecc-cCceeecchhhhhhhhheee
Confidence 88888888888888888888776 445666665 2246777777 45677788888877777654
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.58 E-value=7e-09 Score=100.07 Aligned_cols=109 Identities=23% Similarity=0.317 Sum_probs=66.2
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHH--------HHHh------cccCCCCc-hhhc-cCcc----
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDS--------VRGI------LTRTPNTP-LGQH-LNTL---- 121 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~--------L~~L------l~~lp~~~-l~~~-L~~L---- 121 (256)
|++|...+|.++.+|+.. .+++|+.|+|..|+|..+++. +..+ +..+|... -..+ |+.|
T Consensus 289 L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan 368 (1081)
T KOG0618|consen 289 LVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN 368 (1081)
T ss_pred HHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence 999999999999999988 799999999999999876332 2222 22233211 0000 1111
Q ss_pred -----ccccccCCCCCCcEEEccCCCCccccc-cccCCCCCCEEeeccCcCCcccCC
Q 043683 122 -----VLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLCLRYWERLQSLPK 172 (256)
Q Consensus 122 -----~lp~~~~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~ 172 (256)
..-..+-++.+|+.|+|++|++.++|+ .+.++..|++|++|+ |+++.+|.
T Consensus 369 N~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~ 424 (1081)
T KOG0618|consen 369 NHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG-NKLTTLPD 424 (1081)
T ss_pred CcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhccc-chhhhhhH
Confidence 111223456666666666666666663 455666666666666 44555553
No 24
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.54 E-value=1.8e-08 Score=86.70 Aligned_cols=113 Identities=20% Similarity=0.287 Sum_probs=80.3
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN 141 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n 141 (256)
|+.+|+|+|.|+.+-.++ -++.++.|++++|.+..+ .++..+++|+.||+++|
T Consensus 286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--------------------------~nLa~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--------------------------QNLAELPQLQLLDLSGN 339 (490)
T ss_pred hhhccccccchhhhhhhhhhccceeEEeccccceeee--------------------------hhhhhcccceEeecccc
Confidence 899999999999998888 679999999999998753 22456777888888888
Q ss_pred CCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCccccccccc--chhchhhhhh
Q 043683 142 NFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSG--LFSSFEARTQ 203 (256)
Q Consensus 142 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~--~~~~l~~l~~ 203 (256)
.++.+..+-..+.+.+.|.+++ |.+..+... +-+|..||+++|. ++.+.+ .++++..+..
T Consensus 340 ~Ls~~~Gwh~KLGNIKtL~La~-N~iE~LSGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~ 403 (490)
T KOG1259|consen 340 LLAECVGWHLKLGNIKTLKLAQ-NKIETLSGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLET 403 (490)
T ss_pred hhHhhhhhHhhhcCEeeeehhh-hhHhhhhhhHhhhhheeccccccc-hhhHHHhcccccccHHHH
Confidence 8777766656677777777776 556665554 5567777777654 443332 4555554443
No 25
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.46 E-value=1.4e-07 Score=62.69 Aligned_cols=59 Identities=27% Similarity=0.459 Sum_probs=39.8
Q ss_pred CCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCCCccccc-cccCCCCCCEEee
Q 043683 83 EKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLCL 161 (256)
Q Consensus 83 ~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l 161 (256)
++|++|++++|+++.+ -+..|..+++|++|++++|.++.+|+ .+.++++|++|++
T Consensus 1 p~L~~L~l~~n~l~~i------------------------~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l 56 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEI------------------------PPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDL 56 (61)
T ss_dssp TTESEEEETSSTESEE------------------------CTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEE
T ss_pred CcCcEEECCCCCCCcc------------------------CHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeC
Confidence 3567777777776643 12456677777777777777777763 5677777777777
Q ss_pred ccCc
Q 043683 162 RYWE 165 (256)
Q Consensus 162 ~~~~ 165 (256)
++|+
T Consensus 57 ~~N~ 60 (61)
T PF13855_consen 57 SNNN 60 (61)
T ss_dssp TSSS
T ss_pred cCCc
Confidence 7643
No 26
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.43 E-value=1.2e-07 Score=63.08 Aligned_cols=57 Identities=26% Similarity=0.512 Sum_probs=49.6
Q ss_pred hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~ 140 (256)
|++|++++|.+..+|++ | .+++|++|++++|.++.+ -|..|..+++|++|++++
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i------------------------~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI------------------------PPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE------------------------ETTTTTTSTTESEEEETS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc------------------------CHHHHcCCCCCCEEeCcC
Confidence 67899999999999976 4 899999999999999764 246789999999999999
Q ss_pred CCC
Q 043683 141 NNF 143 (256)
Q Consensus 141 n~l 143 (256)
|++
T Consensus 59 N~l 61 (61)
T PF13855_consen 59 NNL 61 (61)
T ss_dssp SSB
T ss_pred CcC
Confidence 875
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.42 E-value=1.6e-08 Score=93.34 Aligned_cols=119 Identities=26% Similarity=0.343 Sum_probs=71.3
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN 141 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n 141 (256)
|++|-+++|+++.+|.++ .+..|..|+.+.|.+..++..+..| ..+.++.+.++ +.+.+|++++.+ .|..||++||
T Consensus 145 Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l-~slr~l~vrRn-~l~~lp~El~~L-pLi~lDfScN 221 (722)
T KOG0532|consen 145 LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYL-TSLRDLNVRRN-HLEDLPEELCSL-PLIRLDFSCN 221 (722)
T ss_pred ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhH-HHHHHHHHhhh-hhhhCCHHHhCC-ceeeeecccC
Confidence 666666666666666666 5566666666666665553322221 00000000000 000347777755 4888999999
Q ss_pred CCccccccccCCCCCCEEeeccCcCCcccCCC--CC----CCcEEeccCc
Q 043683 142 NFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PC----KLHELDAHHC 185 (256)
Q Consensus 142 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~----~L~~L~l~~~ 185 (256)
++..||-.|.++++|++|.|.+ |-+++=|.. .. =.++|+...|
T Consensus 222 kis~iPv~fr~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 222 KISYLPVDFRKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ceeecchhhhhhhhheeeeecc-CCCCCChHHHHhccceeeeeeecchhc
Confidence 9999999999999999998886 547775554 22 2366777666
No 28
>PLN03150 hypothetical protein; Provisional
Probab=98.41 E-value=4.1e-07 Score=87.63 Aligned_cols=89 Identities=20% Similarity=0.302 Sum_probs=78.5
Q ss_pred ccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCCCc-cccccccCCCCCCEEeecc
Q 043683 85 LVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNNFE-RIPESVIQLSKLGRLCLRY 163 (256)
Q Consensus 85 L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~l~-~lp~~i~~l~~L~~L~l~~ 163 (256)
++.|+|++|.+++ .+|..++.+++|+.|+|++|++. .+|+.++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g------------------------~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~ 475 (623)
T PLN03150 420 IDGLGLDNQGLRG------------------------FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSY 475 (623)
T ss_pred EEEEECCCCCccc------------------------cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCC
Confidence 7788899888865 35888899999999999999998 8999999999999999999
Q ss_pred CcCCcccCCC---CCCCcEEeccCcccccccccchhc
Q 043683 164 WERLQSLPKL---PCKLHELDAHHCTALESLSGLFSS 197 (256)
Q Consensus 164 ~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~ 197 (256)
|...+.+|.. +++|++|++++|...+.+|..++.
T Consensus 476 N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 476 NSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred CCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence 8777788875 889999999999877889988765
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.30 E-value=7.1e-08 Score=83.12 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=32.1
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL 98 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l 98 (256)
+++|++|+|.+..+.+ . .+.+|+.|||++|.+.++
T Consensus 309 ir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~ 344 (490)
T KOG1259|consen 309 LRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAEC 344 (490)
T ss_pred eeEEeccccceeeehh-hhhcccceEeecccchhHhh
Confidence 9999999999998876 5 899999999999999876
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.25 E-value=3.2e-07 Score=91.02 Aligned_cols=97 Identities=28% Similarity=0.404 Sum_probs=76.3
Q ss_pred hhhhhccCCC--CCccCCcc--ccCCccEEeCcCCc-chhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEE
Q 043683 63 LRYFHWHGCP--LKSLPSNI--HLEKLVLLEMPHSN-IQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLD 137 (256)
Q Consensus 63 L~~L~ls~n~--l~~lp~~~--~l~~L~~L~L~~n~-l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~ 137 (256)
|+.|-+..|. +..++..| .++.|++|||++|. +.+ +|.+++.+-+|++|+
T Consensus 547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~-------------------------LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK-------------------------LPSSIGELVHLRYLD 601 (889)
T ss_pred cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc-------------------------CChHHhhhhhhhccc
Confidence 6677776665 66666654 68888888888763 332 388888999999999
Q ss_pred ccCCCCccccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccC
Q 043683 138 LQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHH 184 (256)
Q Consensus 138 l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~ 184 (256)
+++..++.+|.++++|++|.+|++..+..+..+|.. +++|++|.+..
T Consensus 602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 999999999999999999999999887777777665 78889888765
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.19 E-value=5.3e-07 Score=81.93 Aligned_cols=97 Identities=28% Similarity=0.442 Sum_probs=65.4
Q ss_pred hhhhhccCCCCCccCCcc-ccC-CccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLE-KLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~-~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~ 140 (256)
++.|++.+|.+..+|+.. .+. +|+.|++++|.++.+ |..++.+++|+.|+++.
T Consensus 118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l-------------------------~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESL-------------------------PSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeEEecCCcccccCccccccchhhcccccccccchhhh-------------------------hhhhhccccccccccCC
Confidence 788889999999999888 553 899999999998865 34445566666666666
Q ss_pred CCCccccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCc
Q 043683 141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHC 185 (256)
Q Consensus 141 n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~ 185 (256)
|+++.+|...+.+..|+.|++++ +.+..+|.. +..|+.+.++++
T Consensus 173 N~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 173 NDLSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred chhhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCC
Confidence 66666665555566666666665 445555553 334666666554
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.16 E-value=6.5e-07 Score=79.64 Aligned_cols=55 Identities=16% Similarity=0.321 Sum_probs=36.0
Q ss_pred eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcC-Ccchhh
Q 043683 44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPH-SNIQQL 98 (256)
Q Consensus 44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~-n~l~~l 98 (256)
+++..+++..+.+.+|+.+ ||+|||++|.|+.|-++ | .+++|..|-+.+ |+|+.+
T Consensus 72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence 3444555566777777776 77777777777776544 4 677766665544 777766
No 33
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.10 E-value=3e-06 Score=52.57 Aligned_cols=41 Identities=24% Similarity=0.403 Sum_probs=33.9
Q ss_pred CCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCC
Q 043683 131 SSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPK 172 (256)
Q Consensus 131 ~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 172 (256)
++|++|++++|+++.+|+.+++|++|+.|++++| .+..++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4799999999999999988999999999999985 4666653
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.09 E-value=1.1e-06 Score=79.81 Aligned_cols=132 Identities=27% Similarity=0.417 Sum_probs=81.3
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHH---HHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEE
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLD---SVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLD 137 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~---~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~ 137 (256)
|+.|++++|.+..+|..+ .+++|+.|++++|++..+.. .+..+ ..+.++++ ++ .+|..+.....|+++.
T Consensus 142 L~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L----~~L~ls~N~i~--~l~~~~~~~~~L~~l~ 215 (394)
T COG4886 142 LKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNL----NNLDLSGNKIS--DLPPEIELLSALEELD 215 (394)
T ss_pred cccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhh----hheeccCCccc--cCchhhhhhhhhhhhh
Confidence 888999999999998777 89999999999999887632 11111 00000000 00 1244444455577777
Q ss_pred ccCCCCccccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhchhhhhh
Q 043683 138 LQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEARTQ 203 (256)
Q Consensus 138 l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~ 203 (256)
++.|....++..+.++.++..+.+.+ +.+..++.. +++++.|++++|. +..++. ++.+..+..
T Consensus 216 ~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~n~-i~~i~~-~~~~~~l~~ 281 (394)
T COG4886 216 LSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSNNQ-ISSISS-LGSLTNLRE 281 (394)
T ss_pred hcCCcceecchhhhhcccccccccCC-ceeeeccchhccccccceecccccc-cccccc-ccccCccCE
Confidence 77776556666677777777777665 444443333 6678888887754 555655 555554443
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.01 E-value=1.9e-06 Score=85.67 Aligned_cols=54 Identities=28% Similarity=0.503 Sum_probs=44.6
Q ss_pred eeecChHHHHhh--hhhhhccCCC-CCccCCcc-ccCCccEEeCcCCcchhhHHHHHH
Q 043683 51 EIHLNPDTFRKM--LRYFHWHGCP-LKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRG 104 (256)
Q Consensus 51 ~~~l~~~~f~~l--L~~L~ls~n~-l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~ 104 (256)
...++...|..+ |++||+++|. ++.+|..| +|-+|++|++++..++.++.++..
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~ 616 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGN 616 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHH
Confidence 455666668888 9999999887 89999999 899999999999999877443333
No 36
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.01 E-value=3.5e-07 Score=70.41 Aligned_cols=76 Identities=21% Similarity=0.344 Sum_probs=46.8
Q ss_pred hhhhhccCCCCCccCCcc--ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLPSNI--HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~--~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~ 140 (256)
|+..++++|.+..+|+.| .++.++.|++++|.|.++ |.++..++.|+.|+++.
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-------------------------PeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-------------------------PEELAAMPALRSLNLRF 109 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-------------------------hHHHhhhHHhhhccccc
Confidence 555566666666666655 445666666666666543 55556666666666666
Q ss_pred CCCccccccccCCCCCCEEeecc
Q 043683 141 NNFERIPESVIQLSKLGRLCLRY 163 (256)
Q Consensus 141 n~l~~lp~~i~~l~~L~~L~l~~ 163 (256)
|.+...|..|..|.+|..|+..+
T Consensus 110 N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 110 NPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred CccccchHHHHHHHhHHHhcCCC
Confidence 66666666665566666666554
No 37
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=7.1e-06 Score=50.84 Aligned_cols=40 Identities=28% Similarity=0.524 Sum_probs=34.1
Q ss_pred CCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCCCcccc
Q 043683 83 EKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNNFERIP 147 (256)
Q Consensus 83 ~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~l~~lp 147 (256)
++|++|++++|+|+.+ |..++++++|++|++++|+++.+|
T Consensus 1 ~~L~~L~l~~N~i~~l-------------------------~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDL-------------------------PPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSH-------------------------GGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCccc-------------------------CchHhCCCCCCEEEecCCCCCCCc
Confidence 5799999999999865 767899999999999999999876
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.76 E-value=1.5e-06 Score=82.71 Aligned_cols=96 Identities=21% Similarity=0.252 Sum_probs=55.9
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN 141 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n 141 (256)
++.|+|++|++..+- .+ .+++|.+|||++|.++. +|.++ ..++ .|+.|.+++|
T Consensus 189 le~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~-----------vp~l~-------------~~gc-~L~~L~lrnN 242 (1096)
T KOG1859|consen 189 LESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRH-----------VPQLS-------------MVGC-KLQLLNLRNN 242 (1096)
T ss_pred hhhhccchhhhhhhH-HHHhcccccccccccchhcc-----------ccccc-------------hhhh-hheeeeeccc
Confidence 666666666666554 34 66666666666666543 23321 1122 2677777777
Q ss_pred CCccccccccCCCCCCEEeeccCcCCcccCCC-----CCCCcEEeccCcc
Q 043683 142 NFERIPESVIQLSKLGRLCLRYWERLQSLPKL-----PCKLHELDAHHCT 186 (256)
Q Consensus 142 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-----l~~L~~L~l~~~~ 186 (256)
.++++- ++.+|++|+.||+++ |.+....+. +..|+.|.+.+|+
T Consensus 243 ~l~tL~-gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 243 ALTTLR-GIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred HHHhhh-hHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 777665 666777777777776 333333222 5566777776654
No 39
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.74 E-value=2e-05 Score=69.07 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=19.0
Q ss_pred hhhhhccCCCCCc-cCCcc-ccCC---ccEEeCcCCcch
Q 043683 63 LRYFHWHGCPLKS-LPSNI-HLEK---LVLLEMPHSNIQ 96 (256)
Q Consensus 63 L~~L~ls~n~l~~-lp~~~-~l~~---L~~L~L~~n~l~ 96 (256)
|++|++++|.+.. .+..+ .+.+ |++|++++|.+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence 6666666666542 33333 3333 666676666665
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.72 E-value=2.9e-06 Score=65.41 Aligned_cols=105 Identities=20% Similarity=0.406 Sum_probs=78.2
Q ss_pred hhhhhccCCCCCccCCcc----ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccC-CCCCCcEEE
Q 043683 63 LRYFHWHGCPLKSLPSNI----HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIG-QLSSLGKLD 137 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~----~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~-~l~~L~~L~ 137 (256)
+..++++++++..++.-. ....|...+|++|.++.+ |..|. .++.++.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~f-------------------------p~kft~kf~t~t~lN 83 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKF-------------------------PKKFTIKFPTATTLN 83 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhC-------------------------CHHHhhccchhhhhh
Confidence 667788888887776554 456777789999999865 33333 456789999
Q ss_pred ccCCCCccccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccc
Q 043683 138 LQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGL 194 (256)
Q Consensus 138 l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~ 194 (256)
+++|.++.+|+++..++.|+.|+++. |.+...|.. +.++..|+..++ ....+|-.
T Consensus 84 l~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 84 LANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred cchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 99999999999999999999999998 446666765 556666666653 34445543
No 41
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.70 E-value=1.8e-05 Score=69.37 Aligned_cols=122 Identities=19% Similarity=0.221 Sum_probs=64.9
Q ss_pred hhhhhccCCCCCc-----cCCcc-cc-CCccEEeCcCCcchhh-----HHHHHHhcccCCCCchhhc-cCcc---ccccc
Q 043683 63 LRYFHWHGCPLKS-----LPSNI-HL-EKLVLLEMPHSNIQQL-----LDSVRGILTRTPNTPLGQH-LNTL---VLPEN 126 (256)
Q Consensus 63 L~~L~ls~n~l~~-----lp~~~-~l-~~L~~L~L~~n~l~~l-----~~~L~~Ll~~lp~~~l~~~-L~~L---~lp~~ 126 (256)
|++|++++|.++. +...+ .+ ++|+.|++++|.++.. ...+.. +..+..+.+..+ ++.- .++..
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRA-NRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHh-CCCcCEEECcCCCCchHHHHHHHHH
Confidence 7888888888662 22334 45 7889999999988732 111111 111222222221 1100 12333
Q ss_pred cCCCCCCcEEEccCCCCcc-----ccccccCCCCCCEEeeccCcCCccc-----CCC----CCCCcEEeccCcc
Q 043683 127 IGQLSSLGKLDLQKNNFER-----IPESVIQLSKLGRLCLRYWERLQSL-----PKL----PCKLHELDAHHCT 186 (256)
Q Consensus 127 ~~~l~~L~~L~l~~n~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~l-----p~~----l~~L~~L~l~~~~ 186 (256)
+..+++|++|++++|.++. ++..+..+++|++|++++|. +... ... .+.|++|++++|.
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 4445677777777776642 33345566777777777754 3210 111 2567777777764
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=7.9e-05 Score=67.34 Aligned_cols=50 Identities=18% Similarity=0.310 Sum_probs=32.3
Q ss_pred CCCeeeecChHHHHhh------------hhhhhccCCCCCccCCc-c--ccCCccEEeCcCCcch
Q 043683 47 SKVKEIHLNPDTFRKM------------LRYFHWHGCPLKSLPSN-I--HLEKLVLLEMPHSNIQ 96 (256)
Q Consensus 47 ~~l~~~~l~~~~f~~l------------L~~L~ls~n~l~~lp~~-~--~l~~L~~L~L~~n~l~ 96 (256)
.+++.++++.+-|.+. |+.|+++.|.+...-.+ . .+.+|+.|.++.|.+.
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls 210 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLS 210 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCC
Confidence 3445556666655544 77788888876554433 2 5778888888888776
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.56 E-value=5.6e-06 Score=78.86 Aligned_cols=96 Identities=25% Similarity=0.323 Sum_probs=74.1
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN 141 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n 141 (256)
|...++++|.+..+-... -++.|+.|+|++|+++.+ +.+..++.|+.||+++|
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--------------------------~~Lr~l~~LkhLDlsyN 219 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--------------------------DNLRRLPKLKHLDLSYN 219 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--------------------------HHHHhcccccccccccc
Confidence 666677777777776666 578888888988888764 23466788999999999
Q ss_pred CCccccc-cccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcc
Q 043683 142 NFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCT 186 (256)
Q Consensus 142 ~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~ 186 (256)
.+..+|. ....+. |..|.+.+ |.++++-.+ +.+|+.||+++|-
T Consensus 220 ~L~~vp~l~~~gc~-L~~L~lrn-N~l~tL~gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 220 CLRHVPQLSMVGCK-LQLLNLRN-NALTTLRGIENLKSLYGLDLSYNL 265 (1096)
T ss_pred hhccccccchhhhh-heeeeecc-cHHHhhhhHHhhhhhhccchhHhh
Confidence 9998884 444554 88899987 667877766 8899999999864
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=1.3e-05 Score=72.37 Aligned_cols=58 Identities=22% Similarity=0.103 Sum_probs=31.3
Q ss_pred CCCCCCcEEEccCCC-CccccccccCCCCCCEEeeccCcCCcccCCC-----CCCCcEEeccCcc
Q 043683 128 GQLSSLGKLDLQKNN-FERIPESVIQLSKLGRLCLRYWERLQSLPKL-----PCKLHELDAHHCT 186 (256)
Q Consensus 128 ~~l~~L~~L~l~~n~-l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-----l~~L~~L~l~~~~ 186 (256)
..+++|+.|++..|. +........-++.|+.|+|++|+ +..++.. ++.|+.|+++.|.
T Consensus 219 ~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tg 282 (505)
T KOG3207|consen 219 LTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTG 282 (505)
T ss_pred HhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhhccccC
Confidence 345666666666553 22212233455667777777644 3344432 6666666666553
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.47 E-value=6.3e-05 Score=69.09 Aligned_cols=97 Identities=20% Similarity=0.272 Sum_probs=53.0
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN 141 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n 141 (256)
++.+.+..|.+..+-..+ .+++|..|++.+|+|+++ ...+..+++|++|++++|
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-------------------------~~~l~~~~~L~~L~ls~N 128 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-------------------------ENLLSSLVNLQVLDLSFN 128 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccchhhc-------------------------ccchhhhhcchheecccc
Confidence 455555555555543434 566666666666666543 111344556666666666
Q ss_pred CCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcc
Q 043683 142 NFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCT 186 (256)
Q Consensus 142 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~ 186 (256)
.|+.+. .+..+..|+.|++++ |.+..+... +.+|+.+++++|.
T Consensus 129 ~I~~i~-~l~~l~~L~~L~l~~-N~i~~~~~~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 129 KITKLE-GLSTLTLLKELNLSG-NLISDISGLESLKSLKLLDLSYNR 173 (414)
T ss_pred cccccc-chhhccchhhheecc-CcchhccCCccchhhhcccCCcch
Confidence 666554 344455566666665 335555544 5556666666544
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.36 E-value=4.1e-05 Score=70.31 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=30.2
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL 98 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l 98 (256)
+.+|++.+|.|..+...+ .+++|++|++++|.|+.+
T Consensus 97 l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i 133 (414)
T KOG0531|consen 97 LEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL 133 (414)
T ss_pred eeeeeccccchhhcccchhhhhcchheeccccccccc
Confidence 888888888888887756 788999999999988765
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.23 E-value=0.00032 Score=63.90 Aligned_cols=87 Identities=20% Similarity=0.376 Sum_probs=56.0
Q ss_pred CCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC-CCCCcEEeccCcccccccccchhchhhh-hhccC
Q 043683 129 QLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL-PCKLHELDAHHCTALESLSGLFSSFEAR-TQYFD 206 (256)
Q Consensus 129 ~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-l~~L~~L~l~~~~~l~~~p~~~~~l~~l-~~l~~ 206 (256)
.+.+++.|+++++.++.+| . -..+|+.|.+++|+.+..+|.. +.+|++|++++|..+..+|..+..+.-. ..+..
T Consensus 50 ~~~~l~~L~Is~c~L~sLP-~--LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~sLe~L~L~~n~~~~ 126 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP-V--LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPESVRSLEIKGSATDS 126 (426)
T ss_pred HhcCCCEEEeCCCCCcccC-C--CCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccccccceEEeCCCCCcc
Confidence 3567778888877777777 2 2346888888877777777765 5678888888876677777776654310 01123
Q ss_pred CcccHHHHHHhH
Q 043683 207 LRILEDALQETQ 218 (256)
Q Consensus 207 l~~~~~~~~~~~ 218 (256)
+..+|..+..+.
T Consensus 127 L~~LPssLk~L~ 138 (426)
T PRK15386 127 IKNVPNGLTSLS 138 (426)
T ss_pred cccCcchHhhee
Confidence 445566555443
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.20 E-value=0.00041 Score=56.93 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=41.9
Q ss_pred hhhhhccCCCCCccCCcc--ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLPSNI--HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~--~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~ 140 (256)
|..|.+++|.|+.+-+.+ -+++|..|.+.+|.|.++ +.+.. +..++.|++|.+-+
T Consensus 66 L~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l--------~dl~p---------------La~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 66 LHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL--------GDLDP---------------LASCPKLEYLTLLG 122 (233)
T ss_pred cceEEecCCcceeeccchhhhccccceEEecCcchhhh--------hhcch---------------hccCCccceeeecC
Confidence 556666666666665555 345566666666665542 11111 14455666666666
Q ss_pred CCCccccc----cccCCCCCCEEeec
Q 043683 141 NNFERIPE----SVIQLSKLGRLCLR 162 (256)
Q Consensus 141 n~l~~lp~----~i~~l~~L~~L~l~ 162 (256)
|.++..+. .+..+++|+.||..
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehh
Confidence 66554432 34556666666654
No 49
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.01 E-value=0.00083 Score=61.24 Aligned_cols=60 Identities=17% Similarity=0.372 Sum_probs=28.7
Q ss_pred CCcEEEcc-CCCCccccccccCCCCCCEEeeccCcCCcccCCCCCCCcEEeccC--cccccccccchh
Q 043683 132 SLGKLDLQ-KNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHH--CTALESLSGLFS 196 (256)
Q Consensus 132 ~L~~L~l~-~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~L~~L~l~~--~~~l~~~p~~~~ 196 (256)
+|++|.++ +++++.+|..+ ..+|++|++++|..+..+|. +|+.|++.. +..+..+|..+.
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~---sLe~L~L~~n~~~~L~~LPssLk 135 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE---SVRSLEIKGSATDSIKNVPNGLT 135 (426)
T ss_pred CCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc---ccceEEeCCCCCcccccCcchHh
Confidence 45556665 45555555433 24556666665544544443 244444432 223444554443
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.83 E-value=0.0004 Score=67.69 Aligned_cols=76 Identities=20% Similarity=0.333 Sum_probs=41.2
Q ss_pred hhhhhccCCC-C-CccCCcc--ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEc
Q 043683 63 LRYFHWHGCP-L-KSLPSNI--HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDL 138 (256)
Q Consensus 63 L~~L~ls~n~-l-~~lp~~~--~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l 138 (256)
|++|++++.. + ...|..+ .+++|+.|.+.+-.+..- .. -.-..++++|..||+
T Consensus 124 L~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~--dF---------------------~~lc~sFpNL~sLDI 180 (699)
T KOG3665|consen 124 LQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND--DF---------------------SQLCASFPNLRSLDI 180 (699)
T ss_pred hhhcCccccchhhccHHHHHhhhCcccceEEecCceecch--hH---------------------HHHhhccCccceeec
Confidence 8888888765 2 2334444 578888888777544211 00 011134555566666
Q ss_pred cCCCCccccccccCCCCCCEEeec
Q 043683 139 QKNNFERIPESVIQLSKLGRLCLR 162 (256)
Q Consensus 139 ~~n~l~~lp~~i~~l~~L~~L~l~ 162 (256)
|+.+++.+ .+++.|++|+.|.+.
T Consensus 181 S~TnI~nl-~GIS~LknLq~L~mr 203 (699)
T KOG3665|consen 181 SGTNISNL-SGISRLKNLQVLSMR 203 (699)
T ss_pred CCCCccCc-HHHhccccHHHHhcc
Confidence 65555554 355555555555444
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.79 E-value=0.0026 Score=52.27 Aligned_cols=98 Identities=19% Similarity=0.204 Sum_probs=62.2
Q ss_pred hhhhhccCCCCCccCCccccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCC
Q 043683 63 LRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNN 142 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~ 142 (256)
...+|+++|.+..++.--.++.|..|.+.+|+|+.+-+.|. .-+++|+.|.+.+|.
T Consensus 44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~------------------------~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLD------------------------TFLPNLKTLILTNNS 99 (233)
T ss_pred cceecccccchhhcccCCCccccceEEecCCcceeeccchh------------------------hhccccceEEecCcc
Confidence 55677888877766532277888888888888776422221 134567888888888
Q ss_pred Cccccc--cccCCCCCCEEeeccCcCCcccCCC-------CCCCcEEeccCc
Q 043683 143 FERIPE--SVIQLSKLGRLCLRYWERLQSLPKL-------PCKLHELDAHHC 185 (256)
Q Consensus 143 l~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~-------l~~L~~L~l~~~ 185 (256)
+.++-+ -+..+++|++|.+-+|+ ......- +++|+.||.+.-
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 776642 45567777877776643 3333221 677787777653
No 52
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.00013 Score=62.61 Aligned_cols=93 Identities=23% Similarity=0.279 Sum_probs=71.5
Q ss_pred hhhhhccCCCCCccCCccccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCC
Q 043683 63 LRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNN 142 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~ 142 (256)
.+.|+.-++.+..+.-.-.++.|++|.|+-|+|+.+ ..+..+++|++|+|..|.
T Consensus 21 vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL--------------------------~pl~rCtrLkElYLRkN~ 74 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL--------------------------APLQRCTRLKELYLRKNC 74 (388)
T ss_pred hhhhcccCCCccHHHHHHhcccceeEEeeccccccc--------------------------hhHHHHHHHHHHHHHhcc
Confidence 677787788887764333789999999999998764 234677889999999999
Q ss_pred Cccccc--cccCCCCCCEEeeccCcCCcccCCC--------CCCCcEEe
Q 043683 143 FERIPE--SVIQLSKLGRLCLRYWERLQSLPKL--------PCKLHELD 181 (256)
Q Consensus 143 l~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~--------l~~L~~L~ 181 (256)
|.++.+ -+.++++|+.|+|..|+-.+.-+.. +++|+.||
T Consensus 75 I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 75 IESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 988874 4578999999999887766655443 77888876
No 53
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.50 E-value=0.00091 Score=34.80 Aligned_cols=22 Identities=45% Similarity=0.608 Sum_probs=16.7
Q ss_pred CCcEEEccCCCCccccccccCC
Q 043683 132 SLGKLDLQKNNFERIPESVIQL 153 (256)
Q Consensus 132 ~L~~L~l~~n~l~~lp~~i~~l 153 (256)
+|++||+++|+++.+|+++++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4788888888888888776553
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.40 E-value=0.003 Score=53.66 Aligned_cols=101 Identities=21% Similarity=0.162 Sum_probs=61.2
Q ss_pred hhhhhccCCCCCccCCccccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCC
Q 043683 63 LRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNN 142 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~ 142 (256)
|..|.+.+..++.+-..-.|++|++|.++.|..... . .++.....+++|+++++++|+
T Consensus 45 le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~--------~--------------~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 45 LELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVS--------G--------------GLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred hhhhhhhccceeecccCCCcchhhhhcccCCccccc--------c--------------cceehhhhCCceeEEeecCCc
Confidence 555566655555443222678888888888843311 0 112222445888999999888
Q ss_pred Ccccc--ccccCCCCCCEEeeccCcCCcccCCC-------CCCCcEEeccCcc
Q 043683 143 FERIP--ESVIQLSKLGRLCLRYWERLQSLPKL-------PCKLHELDAHHCT 186 (256)
Q Consensus 143 l~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~~-------l~~L~~L~l~~~~ 186 (256)
++.+. +....+.+|..|++.+|.-.. +-.- +++|++|+-....
T Consensus 103 i~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 103 IKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred cccccccchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccC
Confidence 87432 245567777888888765333 3221 6788888766544
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.08 E-value=0.0042 Score=52.77 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=15.6
Q ss_pred hhhhhccCC--C-CCccCCcc-ccCCccEEeCcCCcch
Q 043683 63 LRYFHWHGC--P-LKSLPSNI-HLEKLVLLEMPHSNIQ 96 (256)
Q Consensus 63 L~~L~ls~n--~-l~~lp~~~-~l~~L~~L~L~~n~l~ 96 (256)
|++|.++.| . ...++.-+ .+++|+++++++|+++
T Consensus 67 LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 67 LKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred hhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 555555555 2 12233333 3455555555555544
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.85 E-value=0.0029 Score=61.78 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=24.6
Q ss_pred hhhhhccCCCCC--ccCCcc-ccCCccEEeCcCCcchhh
Q 043683 63 LRYFHWHGCPLK--SLPSNI-HLEKLVLLEMPHSNIQQL 98 (256)
Q Consensus 63 L~~L~ls~n~l~--~lp~~~-~l~~L~~L~L~~n~l~~l 98 (256)
|+.|.+++-.+. ++-.-. ++++|..||+|+++++.+
T Consensus 150 L~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl 188 (699)
T KOG3665|consen 150 LRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL 188 (699)
T ss_pred cceEEecCceecchhHHHHhhccCccceeecCCCCccCc
Confidence 888888775532 222223 678999999999888754
No 57
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.22 E-value=0.016 Score=51.31 Aligned_cols=63 Identities=21% Similarity=0.198 Sum_probs=43.1
Q ss_pred cccCCCCCCcEEEccCCCCcc-----ccccccCCCCCCEEeeccCcCCcc--------cCCCCCCCcEEeccCccc
Q 043683 125 ENIGQLSSLGKLDLQKNNFER-----IPESVIQLSKLGRLCLRYWERLQS--------LPKLPCKLHELDAHHCTA 187 (256)
Q Consensus 125 ~~~~~l~~L~~L~l~~n~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~--------lp~~l~~L~~L~l~~~~~ 187 (256)
..+..+++|+.|||..|-|+. +...+..+++|+.|++++|..-.. +-...++|++|.+.+|..
T Consensus 207 eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 207 EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred HHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 345678889999999888763 334566778889999988863111 111267788888888753
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=0.0072 Score=52.68 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=28.4
Q ss_pred hhhhhccCCCCCccCCc--c--ccCCccEEeCcCCcchhh
Q 043683 63 LRYFHWHGCPLKSLPSN--I--HLEKLVLLEMPHSNIQQL 98 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~--~--~l~~L~~L~L~~n~l~~l 98 (256)
++.||+.+|.|+....- + +++.|++|+++.|.+...
T Consensus 73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~ 112 (418)
T KOG2982|consen 73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD 112 (418)
T ss_pred hhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc
Confidence 88899999988765432 2 789999999999988654
No 59
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.02 E-value=0.014 Score=28.28 Aligned_cols=16 Identities=38% Similarity=0.706 Sum_probs=7.3
Q ss_pred CCcEEEccCCCCcccc
Q 043683 132 SLGKLDLQKNNFERIP 147 (256)
Q Consensus 132 ~L~~L~l~~n~l~~lp 147 (256)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4666666666665554
No 60
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.93 E-value=0.045 Score=29.34 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=17.3
Q ss_pred CCCCcEEEccCCCCccccccc
Q 043683 130 LSSLGKLDLQKNNFERIPESV 150 (256)
Q Consensus 130 l~~L~~L~l~~n~l~~lp~~i 150 (256)
+++|++|+|++|+++.+|+..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467899999999999998654
No 61
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.93 E-value=0.045 Score=29.34 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=17.3
Q ss_pred CCCCcEEEccCCCCccccccc
Q 043683 130 LSSLGKLDLQKNNFERIPESV 150 (256)
Q Consensus 130 l~~L~~L~l~~n~l~~lp~~i 150 (256)
+++|++|+|++|+++.+|+..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467899999999999998654
No 62
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=0.012 Score=51.38 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=29.7
Q ss_pred CCCCCCcEEEcc-CCCCc-cccccccCCCCCCEEeeccCcCCcccCCC------CCCCcEEeccCc
Q 043683 128 GQLSSLGKLDLQ-KNNFE-RIPESVIQLSKLGRLCLRYWERLQSLPKL------PCKLHELDAHHC 185 (256)
Q Consensus 128 ~~l~~L~~L~l~-~n~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~------l~~L~~L~l~~~ 185 (256)
..+++|..|||+ ++.++ ..-..+.++.-|++|.++.|..+ +|.. .++|.+|++.+|
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 345666666666 34444 22234556666666666665422 2221 456666666654
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.74 E-value=0.033 Score=28.78 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=12.0
Q ss_pred CCcEEeccCcccccccccchhc
Q 043683 176 KLHELDAHHCTALESLSGLFSS 197 (256)
Q Consensus 176 ~L~~L~l~~~~~l~~~p~~~~~ 197 (256)
+|++|++++| .+..+|+.+++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 3566666666 34466665543
No 64
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=93.67 E-value=0.011 Score=52.44 Aligned_cols=59 Identities=20% Similarity=0.209 Sum_probs=36.3
Q ss_pred cCCCCCCcEEEccCCCCc--c---ccccccCCCCCCEEeeccCcCCcccCC--------CCCCCcEEeccCcc
Q 043683 127 IGQLSSLGKLDLQKNNFE--R---IPESVIQLSKLGRLCLRYWERLQSLPK--------LPCKLHELDAHHCT 186 (256)
Q Consensus 127 ~~~l~~L~~L~l~~n~l~--~---lp~~i~~l~~L~~L~l~~~~~l~~lp~--------~l~~L~~L~l~~~~ 186 (256)
+...+.|+.+.+..|.+. . +-.++..+++|+.||+.+|. ++.--. .+++|+.|++++|.
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecccccc
Confidence 445566777777766654 1 23356678888888888743 322111 14577888888875
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.75 E-value=0.01 Score=51.33 Aligned_cols=66 Identities=20% Similarity=0.231 Sum_probs=52.8
Q ss_pred CCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC-----CCCCcEEeccCcccccccccch
Q 043683 128 GQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL-----PCKLHELDAHHCTALESLSGLF 195 (256)
Q Consensus 128 ~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-----l~~L~~L~l~~~~~l~~~p~~~ 195 (256)
..++.|++|.|+-|+++++. .+..+++|++|+|.. |.+.++.+. +++|+.|.+..|+--+.-+...
T Consensus 38 ~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nY 108 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNY 108 (388)
T ss_pred HhcccceeEEeeccccccch-hHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCCcccccchhH
Confidence 56888999999999999886 577899999999987 556666554 7899999999887766555543
No 66
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.66 E-value=0.04 Score=48.14 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=30.9
Q ss_pred cccCCCCCCcEEEccCCCCcccc--ccccCCCCCCEEeeccCcCCcccC
Q 043683 125 ENIGQLSSLGKLDLQKNNFERIP--ESVIQLSKLGRLCLRYWERLQSLP 171 (256)
Q Consensus 125 ~~~~~l~~L~~L~l~~n~l~~lp--~~i~~l~~L~~L~l~~~~~l~~lp 171 (256)
..+..++.+--|+|+.|++.+.. .++..+++|..|.+++++....+.
T Consensus 218 k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 218 KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 33455666677777777776543 366777888888888766555443
No 67
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.29 E-value=0.0066 Score=52.93 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=20.9
Q ss_pred cCCCCCCcEEEcc-CCCCcccc--ccccCCCCCCEEeeccCc
Q 043683 127 IGQLSSLGKLDLQ-KNNFERIP--ESVIQLSKLGRLCLRYWE 165 (256)
Q Consensus 127 ~~~l~~L~~L~l~-~n~l~~lp--~~i~~l~~L~~L~l~~~~ 165 (256)
+..-.+|+.|+++ +++|++.. --+.+++.|..|+++.|.
T Consensus 230 iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 230 IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF 271 (419)
T ss_pred HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh
Confidence 3444566666666 55665332 234555566666555543
No 68
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.41 E-value=0.0054 Score=51.67 Aligned_cols=57 Identities=19% Similarity=0.169 Sum_probs=36.2
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN 141 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n 141 (256)
+..|+++.|.+.-+|.++ .+..++.++++.|..+.. |.+++..+.++++++..|
T Consensus 67 ~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~-------------------------p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 67 LVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQ-------------------------PKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred HHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhC-------------------------CccccccCCcchhhhccC
Confidence 566666666666666666 666666666666665543 666666666666666666
Q ss_pred CCc
Q 043683 142 NFE 144 (256)
Q Consensus 142 ~l~ 144 (256)
.|.
T Consensus 122 ~~~ 124 (326)
T KOG0473|consen 122 EFF 124 (326)
T ss_pred cch
Confidence 544
No 69
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.31 E-value=0.043 Score=46.36 Aligned_cols=34 Identities=9% Similarity=-0.126 Sum_probs=24.4
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcch
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQ 96 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~ 96 (256)
++.+++..|+.+..|.++ .+++++++++..|.+.
T Consensus 90 ~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 90 TVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHhhccchhhCCccccccCCcchhhhccCcch
Confidence 666677777777777777 7777777777777654
No 70
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=86.57 E-value=0.44 Score=25.75 Aligned_cols=18 Identities=33% Similarity=0.665 Sum_probs=14.0
Q ss_pred CCCcEEEccCCCCccccc
Q 043683 131 SSLGKLDLQKNNFERIPE 148 (256)
Q Consensus 131 ~~L~~L~l~~n~l~~lp~ 148 (256)
.+|++|+.++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357888888888888885
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=85.02 E-value=1.3 Score=32.95 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=13.3
Q ss_pred CCCCCCcEEEccCCCCccccc-cccCCCCCCEEeec
Q 043683 128 GQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLCLR 162 (256)
Q Consensus 128 ~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~ 162 (256)
....+++.+.+.. .+..++. .+..+.+|+.+++.
T Consensus 55 ~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 55 SNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp TT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred ecccccccccccc-cccccccccccccccccccccC
Confidence 3444455555543 3333432 33445555555554
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=81.37 E-value=1.2 Score=38.77 Aligned_cols=36 Identities=31% Similarity=0.395 Sum_probs=16.5
Q ss_pred CCCCCCcEEEccCCCCc-ccccc----ccCCCCCCEEeecc
Q 043683 128 GQLSSLGKLDLQKNNFE-RIPES----VIQLSKLGRLCLRY 163 (256)
Q Consensus 128 ~~l~~L~~L~l~~n~l~-~lp~~----i~~l~~L~~L~l~~ 163 (256)
-+++.|+..+||.|.|. ..|+. |..-+.|.+|.+++
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~N 129 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNN 129 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeec
Confidence 34445555555555554 33332 22334455555554
No 73
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.51 E-value=1.7 Score=23.49 Aligned_cols=18 Identities=39% Similarity=0.707 Sum_probs=12.7
Q ss_pred CCCCcEEEccCCCCcccc
Q 043683 130 LSSLGKLDLQKNNFERIP 147 (256)
Q Consensus 130 l~~L~~L~l~~n~l~~lp 147 (256)
+++|++|+++.|+++.+.
T Consensus 1 L~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 1 LTNLEELDLSQNKIKKIE 18 (26)
T ss_pred CCccCEEECCCCccceec
Confidence 356788888888776543
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.92 E-value=1 Score=37.32 Aligned_cols=95 Identities=12% Similarity=0.125 Sum_probs=47.9
Q ss_pred hhhhhhhhcccCCC-CccccCCcccHHHHHhhccccCccceeEeeCCCCeeeecChHHHHhh--hhhhhccCCC-CCccC
Q 043683 2 GWEIVRQESMNDLG-KRSWLWHHEDSIKFLTSNAGRILIEGICLGMSKVKEIHLNPDTFRKM--LRYFHWHGCP-LKSLP 77 (256)
Q Consensus 2 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~-l~~lp 77 (256)
+-+|++.-++.-+. .+.++|-... ..+...+....++.-...|.++..+....-..+.++ ++.|.+.++. +...-
T Consensus 64 Ae~Il~~GgaVkf~~d~~~~~~d~~-g~~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~ 142 (221)
T KOG3864|consen 64 AEWILHCGGAVKFVSDREWLQKDYN-GYFSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC 142 (221)
T ss_pred HHHHHhcCcceeecCChHhhcCccc-ceecCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH
Confidence 45677776665555 5554443221 111112222333333344555554333333333333 7777777665 33321
Q ss_pred Cc-c--ccCCccEEeCcCC-cchh
Q 043683 78 SN-I--HLEKLVLLEMPHS-NIQQ 97 (256)
Q Consensus 78 ~~-~--~l~~L~~L~L~~n-~l~~ 97 (256)
-+ + -.++|+.|++++| +|++
T Consensus 143 L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 143 LERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred HHHhcccccchheeeccCCCeech
Confidence 11 1 3689999999988 5654
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=75.62 E-value=2.3 Score=21.95 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=11.8
Q ss_pred cCCccEEeCcCCcchhh
Q 043683 82 LEKLVLLEMPHSNIQQL 98 (256)
Q Consensus 82 l~~L~~L~L~~n~l~~l 98 (256)
+++|++|++++|.|...
T Consensus 1 ~~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDE 17 (24)
T ss_dssp -TT-SEEE-TSSBEHHH
T ss_pred CCCCCEEEccCCcCCHH
Confidence 36899999999998753
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.91 E-value=1.5 Score=36.41 Aligned_cols=31 Identities=19% Similarity=0.016 Sum_probs=19.1
Q ss_pred ccCCCCCccCCcc-ccCCccEEeCcCCcchhh
Q 043683 68 WHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL 98 (256)
Q Consensus 68 ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l 98 (256)
-+.|..-.+|... +-..++.++-+++.|...
T Consensus 85 ~d~~g~~~lp~~~~~~~~IeaVDAsds~I~~e 116 (221)
T KOG3864|consen 85 KDYNGYFSLPGPNADNVKIEAVDASDSSIMYE 116 (221)
T ss_pred CcccceecCCCCCCCcceEEEEecCCchHHHH
Confidence 3444433556554 556678888888877643
No 77
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=67.65 E-value=2.6 Score=21.23 Aligned_cols=18 Identities=39% Similarity=0.656 Sum_probs=14.4
Q ss_pred CccEEeCcCCcchhhHHH
Q 043683 84 KLVLLEMPHSNIQQLLDS 101 (256)
Q Consensus 84 ~L~~L~L~~n~l~~l~~~ 101 (256)
+|..|++.+++++.+|.+
T Consensus 1 ~LVeL~m~~S~lekLW~G 18 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEG 18 (20)
T ss_pred CcEEEECCCCChHHhcCc
Confidence 478899999999887654
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=63.17 E-value=18 Score=26.59 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=21.2
Q ss_pred cCCCCCCcEEEccCCCCccccc-cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEecc
Q 043683 127 IGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAH 183 (256)
Q Consensus 127 ~~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~ 183 (256)
|.+.++|+.+.+.. .+..+++ .+.++.+|+.+.+.+ + +..++.. ..+++.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN-N-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS-T-TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-CeeEeChhhcccccccccccccc-c-ccccceeeeeccccccccccc
Confidence 34455555555553 3445542 445555566665553 2 4444443 3345555554
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=61.04 E-value=6.5 Score=21.28 Aligned_cols=15 Identities=13% Similarity=0.319 Sum_probs=12.6
Q ss_pred CCccEEeCcCCcchh
Q 043683 83 EKLVLLEMPHSNIQQ 97 (256)
Q Consensus 83 ~~L~~L~L~~n~l~~ 97 (256)
++|++|+|++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 578999999998863
No 80
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=57.87 E-value=8.1 Score=20.35 Aligned_cols=12 Identities=50% Similarity=0.794 Sum_probs=6.2
Q ss_pred CCcEEeccCccc
Q 043683 176 KLHELDAHHCTA 187 (256)
Q Consensus 176 ~L~~L~l~~~~~ 187 (256)
+|++|++++|..
T Consensus 3 ~L~~L~l~~C~~ 14 (26)
T smart00367 3 NLRELDLSGCTN 14 (26)
T ss_pred CCCEeCCCCCCC
Confidence 455555555543
No 81
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=57.47 E-value=16 Score=32.08 Aligned_cols=85 Identities=12% Similarity=0.187 Sum_probs=54.8
Q ss_pred ccCCccEEeCcCCcchhh-HHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCC---Cc-cccc-------
Q 043683 81 HLEKLVLLEMPHSNIQQL-LDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNN---FE-RIPE------- 148 (256)
Q Consensus 81 ~l~~L~~L~L~~n~l~~l-~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~---l~-~lp~------- 148 (256)
.+..++.++||+|.|..- ...+ ...+.+-.+|+..+++.-. .. .+|+
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l---------------------~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~ 86 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEEL---------------------CNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLK 86 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHH---------------------HHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHH
Confidence 356778888888877532 2222 1223445667777766321 11 3333
Q ss_pred cccCCCCCCEEeeccCcCCcccCCC-------CCCCcEEeccCcc
Q 043683 149 SVIQLSKLGRLCLRYWERLQSLPKL-------PCKLHELDAHHCT 186 (256)
Q Consensus 149 ~i~~l~~L~~L~l~~~~~l~~lp~~-------l~~L~~L~l~~~~ 186 (256)
.+-+|++|+..++|+|..-...|+. -+.|.+|.+++|.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 5568899999999997665566654 5689999999875
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=57.46 E-value=4.4 Score=37.13 Aligned_cols=60 Identities=25% Similarity=0.259 Sum_probs=31.7
Q ss_pred CCCCCcEEEccCCC-Ccccc-ccc-cCCCCCCEEeeccCcCCcccC-----CCCCCCcEEeccCcccc
Q 043683 129 QLSSLGKLDLQKNN-FERIP-ESV-IQLSKLGRLCLRYWERLQSLP-----KLPCKLHELDAHHCTAL 188 (256)
Q Consensus 129 ~l~~L~~L~l~~n~-l~~lp-~~i-~~l~~L~~L~l~~~~~l~~lp-----~~l~~L~~L~l~~~~~l 188 (256)
.+.+|+.|+++... ++..- ..+ ..+++|+.|.+.+|..++.-. ...++|++|++++|..+
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 34667777777433 44221 122 236677777766655422110 01566777777776654
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.73 E-value=10 Score=36.06 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=47.0
Q ss_pred ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC--CCccccccccC--CCCC
Q 043683 81 HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN--NFERIPESVIQ--LSKL 156 (256)
Q Consensus 81 ~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n--~l~~lp~~i~~--l~~L 156 (256)
+.+.+..++|++|++..+ ..+. .--...++|+.|+|++| .+..-+ ++.+ ...|
T Consensus 216 n~p~i~sl~lsnNrL~~L--------d~~s--------------slsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~L 272 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHL--------DALS--------------SLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPL 272 (585)
T ss_pred CCcceeeeecccchhhch--------hhhh--------------HHHHhcchhheeecccchhhhcchh-hhhhhcCCCH
Confidence 356677777888877653 1111 11135678999999988 444333 3333 3467
Q ss_pred CEEeeccCcCCcccCCC----------CCCCcEEe
Q 043683 157 GRLCLRYWERLQSLPKL----------PCKLHELD 181 (256)
Q Consensus 157 ~~L~l~~~~~l~~lp~~----------l~~L~~L~ 181 (256)
++|.+.+|+..+.+-.- +++|..||
T Consensus 273 eel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 273 EELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHeeecCCccccchhhhHHHHHHHHHhcchheeec
Confidence 88888887655554321 67777776
No 84
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.19 E-value=41 Score=38.28 Aligned_cols=30 Identities=10% Similarity=0.234 Sum_probs=25.8
Q ss_pred hccCCCCCccCCcc--ccCCccEEeCcCCcch
Q 043683 67 HWHGCPLKSLPSNI--HLEKLVLLEMPHSNIQ 96 (256)
Q Consensus 67 ~ls~n~l~~lp~~~--~l~~L~~L~L~~n~l~ 96 (256)
||++|.|..||... .+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68899999999874 7999999999998664
No 85
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=20.83 E-value=50 Score=30.65 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=15.5
Q ss_pred hhhhhccCCC-CCccCCc-c--ccCCccEEeCcCCc
Q 043683 63 LRYFHWHGCP-LKSLPSN-I--HLEKLVLLEMPHSN 94 (256)
Q Consensus 63 L~~L~ls~n~-l~~lp~~-~--~l~~L~~L~L~~n~ 94 (256)
|++|+.+++. ++..+-+ . +..+|+++.++.++
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~ 331 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ 331 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccc
Confidence 5555555443 3332211 1 34666666666653
Done!