Query 043683
Match_columns 256
No_of_seqs 222 out of 2216
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 12:26:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043683.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043683hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.6 2.6E-16 9E-21 138.3 7.9 164 37-204 81-282 (328)
2 4fcg_A Uncharacterized protein 99.6 1.5E-16 5.3E-21 139.7 4.8 145 59-204 123-306 (328)
3 3rgz_A Protein brassinosteroid 99.5 2.1E-14 7.1E-19 139.5 6.9 129 122-254 623-761 (768)
4 1p9a_G Platelet glycoprotein I 99.5 4.2E-14 1.4E-18 122.1 7.5 157 44-204 36-200 (290)
5 3m19_A Variable lymphocyte rec 99.5 1.3E-13 4.6E-18 116.1 10.0 136 44-204 40-184 (251)
6 1p9a_G Platelet glycoprotein I 99.5 5.4E-14 1.8E-18 121.4 6.4 136 63-204 33-177 (290)
7 3e6j_A Variable lymphocyte rec 99.5 2E-13 6.7E-18 113.8 9.5 98 63-185 42-145 (229)
8 2o6q_A Variable lymphocyte rec 99.4 6.7E-13 2.3E-17 113.0 11.2 157 44-204 42-210 (270)
9 4g8a_A TOLL-like receptor 4; l 99.4 3E-13 1E-17 127.0 9.4 131 44-199 57-197 (635)
10 1ozn_A Reticulon 4 receptor; N 99.4 6.6E-13 2.3E-17 113.6 10.7 55 44-98 37-96 (285)
11 3zyj_A Leucine-rich repeat-con 99.4 4E-13 1.4E-17 122.1 9.2 150 51-203 100-283 (440)
12 1ogq_A PGIP-2, polygalacturona 99.4 4.2E-14 1.4E-18 123.3 2.3 147 57-205 95-274 (313)
13 3zyi_A Leucine-rich repeat-con 99.4 2.4E-13 8.1E-18 124.1 7.0 77 126-204 213-295 (452)
14 2v9t_B SLIT homolog 2 protein 99.4 8.1E-13 2.8E-17 109.4 9.4 114 63-202 34-155 (220)
15 2o6s_A Variable lymphocyte rec 99.4 2.2E-12 7.5E-17 105.4 11.9 117 45-186 34-159 (208)
16 3zyj_A Leucine-rich repeat-con 99.4 2.5E-13 8.4E-18 123.5 6.7 159 44-204 69-260 (440)
17 2z66_A Variable lymphocyte rec 99.4 3.8E-13 1.3E-17 116.2 7.2 141 63-204 80-253 (306)
18 2z80_A TOLL-like receptor 2, v 99.4 2.8E-13 9.4E-18 119.6 6.4 134 44-202 57-201 (353)
19 3zyi_A Leucine-rich repeat-con 99.4 7E-13 2.4E-17 120.9 9.0 159 44-204 80-271 (452)
20 2z62_A TOLL-like receptor 4, v 99.4 3.3E-13 1.1E-17 115.0 6.4 159 44-204 33-229 (276)
21 2v9t_B SLIT homolog 2 protein 99.4 8.8E-13 3E-17 109.2 8.7 119 43-187 36-164 (220)
22 3rfs_A Internalin B, repeat mo 99.4 2.1E-13 7.2E-18 116.3 5.1 139 63-205 65-211 (272)
23 4b8c_D Glucose-repressible alc 99.4 2E-13 7E-18 131.9 5.6 110 63-198 226-339 (727)
24 3rfs_A Internalin B, repeat mo 99.4 9.4E-13 3.2E-17 112.3 8.8 125 63-190 87-220 (272)
25 4g8a_A TOLL-like receptor 4; l 99.4 9.6E-13 3.3E-17 123.5 9.6 118 63-205 54-179 (635)
26 2o6s_A Variable lymphocyte rec 99.4 2E-12 6.7E-17 105.7 10.1 117 63-205 30-154 (208)
27 3e6j_A Variable lymphocyte rec 99.4 1.8E-12 6.3E-17 107.9 9.9 120 43-187 44-171 (229)
28 2v70_A SLIT-2, SLIT homolog 2 99.4 2.2E-12 7.5E-17 106.8 9.8 117 63-204 34-158 (220)
29 2z66_A Variable lymphocyte rec 99.4 4.4E-13 1.5E-17 115.8 5.8 159 44-203 33-227 (306)
30 3m19_A Variable lymphocyte rec 99.4 1.9E-12 6.6E-17 108.9 9.4 119 44-187 64-191 (251)
31 1ogq_A PGIP-2, polygalacturona 99.4 1.4E-13 4.9E-18 119.8 2.4 163 37-202 50-224 (313)
32 2v70_A SLIT-2, SLIT homolog 2 99.4 1.9E-12 6.5E-17 107.2 9.0 120 43-187 36-165 (220)
33 4ezg_A Putative uncharacterize 99.4 1E-12 3.4E-17 106.8 7.2 135 63-203 46-185 (197)
34 1xku_A Decorin; proteoglycan, 99.4 6.6E-13 2.2E-17 116.0 6.3 157 44-204 57-268 (330)
35 2wfh_A SLIT homolog 2 protein 99.3 3.1E-12 1.1E-16 103.9 9.0 99 63-186 33-137 (193)
36 3vq2_A TLR4, TOLL-like recepto 99.3 2E-12 6.7E-17 121.7 8.9 120 43-186 36-164 (606)
37 1ozn_A Reticulon 4 receptor; N 99.3 2.7E-12 9.3E-17 109.8 8.8 156 44-204 61-230 (285)
38 1h6t_A Internalin B; cell adhe 99.3 3.8E-13 1.3E-17 116.1 3.2 130 63-202 70-203 (291)
39 2ft3_A Biglycan; proteoglycan, 99.3 1E-12 3.5E-17 115.0 6.0 71 131-203 193-268 (332)
40 1w8a_A SLIT protein; signaling 99.3 3.2E-12 1.1E-16 103.6 8.5 101 63-188 31-139 (192)
41 1dce_A Protein (RAB geranylger 99.3 8.1E-13 2.8E-17 124.4 5.6 105 63-196 443-553 (567)
42 2z81_A CD282 antigen, TOLL-lik 99.3 8.6E-13 3E-17 122.6 5.7 136 43-202 30-175 (549)
43 2id5_A Lingo-1, leucine rich r 99.3 1.5E-12 5E-17 119.3 7.0 55 44-98 37-95 (477)
44 3t6q_A CD180 antigen; protein- 99.3 3.1E-12 1.1E-16 120.3 9.1 161 43-203 258-453 (606)
45 3o53_A Protein LRIM1, AGAP0063 99.3 7.2E-13 2.5E-17 115.4 4.3 158 43-204 38-242 (317)
46 2je0_A Acidic leucine-rich nuc 99.3 1.6E-12 5.6E-17 100.6 5.8 113 63-203 19-144 (149)
47 3vq2_A TLR4, TOLL-like recepto 99.3 1E-12 3.5E-17 123.6 5.5 43 56-98 369-414 (606)
48 3o6n_A APL1; leucine-rich repe 99.3 2.1E-12 7.3E-17 115.3 7.0 78 125-204 242-323 (390)
49 2ell_A Acidic leucine-rich nuc 99.3 2E-12 6.7E-17 102.2 6.0 58 127-185 91-157 (168)
50 1w8a_A SLIT protein; signaling 99.3 8.1E-12 2.8E-16 101.1 9.4 115 64-205 11-132 (192)
51 2ell_A Acidic leucine-rich nuc 99.3 2.3E-12 7.8E-17 101.8 5.8 114 63-204 26-152 (168)
52 1wwl_A Monocyte differentiatio 99.3 5E-12 1.7E-16 109.8 8.5 137 63-202 151-299 (312)
53 3oja_A Leucine-rich immune mol 99.3 9.7E-13 3.3E-17 121.5 4.1 157 43-203 38-241 (487)
54 2wfh_A SLIT homolog 2 protein 99.3 9.9E-12 3.4E-16 100.9 9.6 113 64-204 13-131 (193)
55 3rgz_A Protein brassinosteroid 99.3 4.4E-12 1.5E-16 123.1 8.8 79 123-201 482-564 (768)
56 4eco_A Uncharacterized protein 99.3 1.1E-11 3.9E-16 117.9 11.4 74 122-196 502-586 (636)
57 3oja_B Anopheles plasmodium-re 99.3 1.1E-12 3.9E-17 123.8 4.4 78 125-204 248-329 (597)
58 2r9u_A Variable lymphocyte rec 99.3 1.3E-11 4.6E-16 98.5 10.0 103 64-193 15-122 (174)
59 1h6u_A Internalin H; cell adhe 99.3 2.7E-12 9.2E-17 111.5 6.2 132 63-204 65-200 (308)
60 1a9n_A U2A', U2A'; complex (nu 99.3 5.1E-12 1.7E-16 100.7 7.2 114 63-204 21-145 (176)
61 4glp_A Monocyte differentiatio 99.3 1.5E-12 5.2E-17 113.0 4.5 136 63-202 147-297 (310)
62 2xwt_C Thyrotropin receptor; s 99.3 1.5E-12 5E-17 108.7 4.2 54 45-98 37-96 (239)
63 2z63_A TOLL-like receptor 4, v 99.3 6.4E-12 2.2E-16 117.0 8.7 132 44-200 33-174 (570)
64 4eco_A Uncharacterized protein 99.3 1.2E-12 4.3E-17 124.5 3.9 132 63-196 251-423 (636)
65 3t6q_A CD180 antigen; protein- 99.3 5.6E-12 1.9E-16 118.6 8.3 135 43-202 37-180 (606)
66 2id5_A Lingo-1, leucine rich r 99.3 3.3E-12 1.1E-16 116.9 6.6 142 44-185 61-234 (477)
67 2xot_A Amphoterin-induced prot 99.3 5.1E-12 1.7E-16 112.1 7.5 132 43-200 43-188 (361)
68 1a9n_A U2A', U2A'; complex (nu 99.3 3E-12 1E-16 102.1 5.0 97 63-186 44-151 (176)
69 4ezg_A Putative uncharacterize 99.3 6.3E-12 2.1E-16 102.0 6.9 145 52-204 15-164 (197)
70 4ecn_A Leucine-rich repeat pro 99.3 2.7E-12 9.4E-17 126.1 5.5 129 63-196 493-639 (876)
71 2z81_A CD282 antigen, TOLL-lik 99.3 2.2E-11 7.6E-16 113.0 11.3 149 53-205 324-503 (549)
72 3g39_A Variable lymphocyte rec 99.3 1.9E-11 6.6E-16 97.1 9.3 98 63-186 11-113 (170)
73 1xku_A Decorin; proteoglycan, 99.3 2E-11 6.7E-16 106.6 10.1 128 63-193 123-280 (330)
74 3o53_A Protein LRIM1, AGAP0063 99.3 4.5E-12 1.5E-16 110.4 5.9 152 48-204 100-267 (317)
75 2z80_A TOLL-like receptor 2, v 99.3 8E-12 2.7E-16 110.2 7.6 117 63-204 54-179 (353)
76 2z62_A TOLL-like receptor 4, v 99.3 1.8E-11 6.2E-16 104.1 9.4 136 63-201 30-175 (276)
77 2o6q_A Variable lymphocyte rec 99.2 1.9E-11 6.5E-16 103.9 9.4 139 45-187 67-217 (270)
78 1h6u_A Internalin H; cell adhe 99.2 6.1E-12 2.1E-16 109.3 6.3 135 59-203 81-221 (308)
79 2ft3_A Biglycan; proteoglycan, 99.2 1.3E-11 4.4E-16 107.9 8.3 144 46-192 101-280 (332)
80 3o6n_A APL1; leucine-rich repe 99.2 3.1E-11 1E-15 107.7 10.8 55 44-98 50-108 (390)
81 4ecn_A Leucine-rich repeat pro 99.2 3.1E-11 1.1E-15 118.7 11.7 73 123-196 743-826 (876)
82 2z7x_B TOLL-like receptor 1, v 99.2 1.3E-11 4.5E-16 114.0 8.4 128 43-201 4-138 (520)
83 1dce_A Protein (RAB geranylger 99.2 1.4E-11 4.9E-16 115.8 8.8 110 44-182 446-567 (567)
84 2o6r_A Variable lymphocyte rec 99.2 3.3E-11 1.1E-15 95.9 9.2 100 63-187 30-136 (177)
85 3v47_A TOLL-like receptor 5B a 99.2 2.4E-11 8.2E-16 110.2 9.5 115 63-203 277-399 (455)
86 3oja_B Anopheles plasmodium-re 99.2 4.2E-11 1.4E-15 113.0 11.2 55 44-98 56-114 (597)
87 1xeu_A Internalin C; cellular 99.2 2.4E-11 8.1E-16 103.3 8.3 108 63-186 65-183 (263)
88 2xwt_C Thyrotropin receptor; s 99.2 3.6E-12 1.2E-16 106.3 3.0 114 51-191 68-195 (239)
89 1xeu_A Internalin C; cellular 99.2 2.1E-11 7.2E-16 103.6 7.6 133 59-202 37-175 (263)
90 4b8c_D Glucose-repressible alc 99.2 1.6E-11 5.3E-16 118.8 7.2 115 64-205 204-322 (727)
91 2je0_A Acidic leucine-rich nuc 99.2 8.5E-12 2.9E-16 96.5 4.3 96 63-184 44-149 (149)
92 1h6t_A Internalin B; cell adhe 99.2 1.6E-11 5.5E-16 105.8 6.3 117 63-187 92-212 (291)
93 2xot_A Amphoterin-induced prot 99.2 4.1E-11 1.4E-15 106.2 8.9 115 63-203 41-167 (361)
94 1ziw_A TOLL-like receptor 3; i 99.2 4.9E-11 1.7E-15 113.7 10.0 148 44-203 30-199 (680)
95 1ziw_A TOLL-like receptor 3; i 99.2 4.9E-11 1.7E-15 113.7 9.5 141 43-186 53-206 (680)
96 2z7x_B TOLL-like receptor 1, v 99.2 3.2E-11 1.1E-15 111.4 8.0 128 43-198 25-163 (520)
97 3oja_A Leucine-rich immune mol 99.2 2.2E-11 7.6E-16 112.4 6.7 150 48-202 100-265 (487)
98 2z63_A TOLL-like receptor 4, v 99.2 5.5E-11 1.9E-15 110.6 9.1 146 57-204 367-523 (570)
99 3v47_A TOLL-like receptor 5B a 99.2 5E-11 1.7E-15 108.1 8.5 128 44-195 35-174 (455)
100 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 6.8E-11 2.3E-15 110.6 9.6 128 43-201 35-169 (562)
101 3j0a_A TOLL-like receptor 5; m 99.2 2.6E-11 9E-16 118.8 6.7 150 45-196 30-195 (844)
102 4fmz_A Internalin; leucine ric 99.2 3.6E-11 1.2E-15 105.4 6.8 117 63-186 68-188 (347)
103 2o6r_A Variable lymphocyte rec 99.1 1.8E-10 6.1E-15 91.6 10.0 116 63-205 9-130 (177)
104 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 6.9E-11 2.3E-15 110.5 8.5 128 43-198 56-194 (562)
105 4ay9_X Follicle-stimulating ho 99.1 2E-11 6.9E-16 107.7 4.6 148 44-192 35-240 (350)
106 1m9s_A Internalin B; cell inva 99.1 6.7E-11 2.3E-15 112.1 8.4 115 63-185 67-185 (605)
107 1jl5_A Outer protein YOPM; leu 99.1 7E-11 2.4E-15 108.2 8.0 117 63-195 133-256 (454)
108 1m9s_A Internalin B; cell inva 99.1 5.2E-11 1.8E-15 112.8 7.1 132 63-204 45-180 (605)
109 4glp_A Monocyte differentiatio 99.1 3.5E-11 1.2E-15 104.3 4.8 139 45-187 151-306 (310)
110 3bz5_A Internalin-J, INLJ; leu 99.1 1.1E-10 3.7E-15 107.0 8.2 121 59-192 60-186 (457)
111 3g06_A SSPH2 (leucine-rich rep 99.1 8.1E-11 2.8E-15 111.8 7.5 71 130-205 220-290 (622)
112 3bz5_A Internalin-J, INLJ; leu 99.1 9.2E-11 3.2E-15 107.4 7.5 128 63-203 44-174 (457)
113 3j0a_A TOLL-like receptor 5; m 99.1 1.3E-10 4.4E-15 114.0 8.0 133 63-198 26-171 (844)
114 4fmz_A Internalin; leucine ric 99.1 9.4E-11 3.2E-15 102.7 6.4 133 63-203 179-315 (347)
115 3cvr_A Invasion plasmid antige 99.1 2.4E-10 8.2E-15 107.5 8.8 126 63-205 102-236 (571)
116 1jl5_A Outer protein YOPM; leu 99.1 1.8E-10 6.1E-15 105.5 7.6 59 123-186 230-288 (454)
117 3g06_A SSPH2 (leucine-rich rep 99.1 4.6E-11 1.6E-15 113.5 3.7 65 131-197 181-262 (622)
118 1wwl_A Monocyte differentiatio 99.1 5E-11 1.7E-15 103.5 3.5 139 45-186 155-307 (312)
119 1ds9_A Outer arm dynein; leuci 99.0 6.3E-13 2.1E-17 108.1 -8.7 107 58-192 43-157 (198)
120 2ifg_A High affinity nerve gro 99.0 7.6E-10 2.6E-14 97.1 9.5 95 66-186 13-114 (347)
121 2r9u_A Variable lymphocyte rec 99.0 4E-10 1.4E-14 89.8 6.5 101 44-171 17-121 (174)
122 3g39_A Variable lymphocyte rec 99.0 4.3E-10 1.5E-14 89.2 6.6 79 63-165 32-113 (170)
123 1o6v_A Internalin A; bacterial 99.0 5.8E-10 2E-14 101.9 8.1 130 63-202 245-378 (466)
124 1o6v_A Internalin A; bacterial 99.0 4.7E-10 1.6E-14 102.5 6.3 72 127-202 283-356 (466)
125 3cvr_A Invasion plasmid antige 99.0 5.4E-10 1.9E-14 105.1 6.9 123 63-200 122-255 (571)
126 2ast_B S-phase kinase-associat 98.9 3.8E-10 1.3E-14 98.2 4.1 148 56-205 61-228 (336)
127 2ast_B S-phase kinase-associat 98.9 1.8E-10 6.3E-15 100.2 1.4 139 63-204 120-277 (336)
128 2ca6_A RAN GTPase-activating p 98.9 6.2E-10 2.1E-14 99.2 2.6 35 63-97 96-136 (386)
129 1ds9_A Outer arm dynein; leuci 98.8 3.2E-11 1.1E-15 97.9 -6.8 104 73-204 37-145 (198)
130 4ay9_X Follicle-stimulating ho 98.7 6.8E-09 2.3E-13 91.4 5.5 118 63-185 130-256 (350)
131 2ifg_A High affinity nerve gro 98.7 1.6E-08 5.5E-13 88.5 5.9 79 63-165 33-114 (347)
132 3goz_A Leucine-rich repeat-con 98.6 4.2E-08 1.4E-12 86.6 5.5 55 131-186 196-264 (362)
133 2ca6_A RAN GTPase-activating p 98.6 4.5E-08 1.5E-12 87.0 5.7 34 63-96 161-200 (386)
134 3goz_A Leucine-rich repeat-con 98.6 8.4E-09 2.9E-13 91.2 0.7 55 43-97 84-152 (362)
135 1z7x_W Ribonuclease inhibitor; 98.5 4.5E-08 1.5E-12 88.6 2.3 123 63-186 30-181 (461)
136 1z7x_W Ribonuclease inhibitor; 98.4 2.7E-08 9.3E-13 90.0 0.6 72 131-203 313-402 (461)
137 3sb4_A Hypothetical leucine ri 98.4 3.1E-07 1.1E-11 79.9 5.6 147 53-204 83-302 (329)
138 3sb4_A Hypothetical leucine ri 98.3 1.1E-06 3.7E-11 76.5 6.8 76 125-204 244-326 (329)
139 3un9_A NLR family member X1; l 98.1 3.7E-07 1.3E-11 81.3 0.9 123 63-186 103-250 (372)
140 3ogk_B Coronatine-insensitive 98.1 1.2E-06 4E-11 81.7 4.4 60 124-183 286-350 (592)
141 3rw6_A Nuclear RNA export fact 97.9 1.5E-05 5E-10 67.8 5.4 63 129-192 168-237 (267)
142 3ogk_B Coronatine-insensitive 97.8 7.3E-06 2.5E-10 76.3 3.2 101 63-163 140-252 (592)
143 3un9_A NLR family member X1; l 97.8 1.1E-05 3.8E-10 71.7 3.2 102 63-165 128-250 (372)
144 2p1m_B Transport inhibitor res 97.8 2.5E-06 8.7E-11 79.4 -1.2 31 63-93 107-140 (594)
145 4fdw_A Leucine rich hypothetic 97.7 3.2E-05 1.1E-09 69.4 5.8 39 54-92 171-212 (401)
146 1io0_A Tropomodulin; LRR prote 97.5 3.4E-05 1.1E-09 61.6 2.7 102 63-186 38-162 (185)
147 3rw6_A Nuclear RNA export fact 97.5 9.3E-05 3.2E-09 62.8 4.6 58 123-181 188-257 (267)
148 4fdw_A Leucine rich hypothetic 97.5 0.00013 4.3E-09 65.5 5.7 46 52-98 147-195 (401)
149 3e4g_A ATP synthase subunit S, 97.3 0.0001 3.5E-09 58.6 3.2 92 75-190 52-154 (176)
150 1io0_A Tropomodulin; LRR prote 97.3 0.00017 5.8E-09 57.5 3.9 83 63-165 67-162 (185)
151 2p1m_B Transport inhibitor res 97.2 2.2E-05 7.5E-10 73.0 -2.0 62 123-184 281-347 (594)
152 3e4g_A ATP synthase subunit S, 96.9 0.00036 1.2E-08 55.4 2.2 83 63-169 63-154 (176)
153 2ra8_A Uncharacterized protein 96.7 0.00081 2.8E-08 59.5 3.5 58 129-186 217-290 (362)
154 3rfe_A Platelet glycoprotein I 96.1 0.0056 1.9E-07 45.8 4.3 55 65-144 12-68 (130)
155 3rfe_A Platelet glycoprotein I 95.5 0.02 6.9E-07 42.7 5.4 35 131-165 31-66 (130)
156 2ra8_A Uncharacterized protein 94.9 0.03 1E-06 49.2 5.2 59 130-188 192-265 (362)
157 4fs7_A Uncharacterized protein 92.8 0.081 2.8E-06 46.5 4.0 54 127-183 293-351 (394)
158 4fs7_A Uncharacterized protein 92.8 0.18 6.3E-06 44.2 6.3 111 50-163 58-194 (394)
159 4gt6_A Cell surface protein; l 92.4 0.33 1.1E-05 42.6 7.5 55 127-184 307-366 (394)
160 4h09_A Hypothetical leucine ri 91.6 0.2 6.8E-06 43.6 5.0 54 127-182 282-340 (379)
161 1pgv_A TMD-1, tropomodulin TMD 89.6 0.5 1.7E-05 37.8 5.3 102 63-185 43-167 (197)
162 4gt6_A Cell surface protein; l 88.9 0.58 2E-05 40.9 5.7 98 53-164 255-367 (394)
163 1pgv_A TMD-1, tropomodulin TMD 87.1 0.47 1.6E-05 37.9 3.6 33 131-163 70-107 (197)
164 4h09_A Hypothetical leucine ri 86.4 0.43 1.5E-05 41.4 3.3 38 125-163 304-342 (379)
165 3ukw_C Bimax1 peptide; arm rep 52.1 5 0.00017 20.4 0.8 9 13-21 20-28 (28)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.64 E-value=2.6e-16 Score=138.27 Aligned_cols=164 Identities=21% Similarity=0.309 Sum_probs=115.0
Q ss_pred CccceeEeeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHH------h--
Q 043683 37 ILIEGICLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRG------I-- 105 (256)
Q Consensus 37 ~~~~~~~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~------L-- 105 (256)
..+..+.+.-..+. .+... +..+ |++|++++|.+..+|..+ .+++|++|++++|.++.++..+.. |
T Consensus 81 ~~l~~L~L~~n~l~--~lp~~-l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP--QFPDQ-AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS--SCCSC-GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch--hcChh-hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 44454444333333 34332 3334 899999999988999888 899999999999988866333222 2
Q ss_pred -----cccCCCCchh---------hc--cCcc--------ccccccCCCCCCcEEEccCCCCccccccccCCCCCCEEee
Q 043683 106 -----LTRTPNTPLG---------QH--LNTL--------VLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCL 161 (256)
Q Consensus 106 -----l~~lp~~~l~---------~~--L~~L--------~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l 161 (256)
++.+|.. ++ ++ |+.| .+|..++.+++|++|++++|+++.+|+.++.+++|++|++
T Consensus 158 ~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 158 RACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence 2334432 11 11 3333 5677788888888888888888888888888888888888
Q ss_pred ccCcCCcccCCC---CCCCcEEeccCcccccccccchhchhhhhhc
Q 043683 162 RYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEARTQY 204 (256)
Q Consensus 162 ~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l 204 (256)
++|+..+.+|.. +++|++|++++|...+.+|..++++++++.+
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 282 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEE
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEE
Confidence 888877777765 7788888888888888888888777776654
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.62 E-value=1.5e-16 Score=139.74 Aligned_cols=145 Identities=25% Similarity=0.356 Sum_probs=116.2
Q ss_pred HHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh----------------HHHHHHh------cccCCCCc
Q 043683 59 FRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL----------------LDSVRGI------LTRTPNTP 113 (256)
Q Consensus 59 f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l----------------~~~L~~L------l~~lp~~~ 113 (256)
|.++ |++|++++|.+..+|..+ .+++|++|++++|++.+. +++|+.| ++.+|..
T Consensus 123 ~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~- 201 (328)
T 4fcg_A 123 MQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS- 201 (328)
T ss_dssp GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG-
T ss_pred HhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh-
Confidence 4444 999999999998999888 899999999998754432 1223333 4445542
Q ss_pred hhhc--cCcc--------ccccccCCCCCCcEEEccCCCCc-cccccccCCCCCCEEeeccCcCCcccCCC---CCCCcE
Q 043683 114 LGQH--LNTL--------VLPENIGQLSSLGKLDLQKNNFE-RIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHE 179 (256)
Q Consensus 114 l~~~--L~~L--------~lp~~~~~l~~L~~L~l~~n~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~ 179 (256)
++.+ |+.| .+|..++.+++|++|++++|++. .+|..++.+++|++|++++|+..+.+|.. +++|++
T Consensus 202 l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 281 (328)
T 4fcg_A 202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281 (328)
T ss_dssp GGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCE
T ss_pred hcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCE
Confidence 3333 4444 57888999999999999987776 88999999999999999999999999976 899999
Q ss_pred EeccCcccccccccchhchhhhhhc
Q 043683 180 LDAHHCTALESLSGLFSSFEARTQY 204 (256)
Q Consensus 180 L~l~~~~~l~~~p~~~~~l~~l~~l 204 (256)
|++++|+.++.+|..+++++++..+
T Consensus 282 L~L~~n~~~~~iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 282 LDLRGCVNLSRLPSLIAQLPANCII 306 (328)
T ss_dssp EECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred EeCCCCCchhhccHHHhhccCceEE
Confidence 9999999999999999998877654
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.49 E-value=2.1e-14 Score=139.50 Aligned_cols=129 Identities=16% Similarity=0.091 Sum_probs=84.9
Q ss_pred ccccccCCCCCCcEEEccCCCCc-cccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhc
Q 043683 122 VLPENIGQLSSLGKLDLQKNNFE-RIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSS 197 (256)
Q Consensus 122 ~lp~~~~~l~~L~~L~l~~n~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~ 197 (256)
.+|..++.+++|++||+++|+++ .+|.+++++++|+.|++++|...+.+|.. +++|+.|++++|...+.+|..++.
T Consensus 623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~ 702 (768)
T 3rgz_A 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702 (768)
T ss_dssp ECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred cCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence 35667788899999999999998 88999999999999999998777788876 889999999999888899999998
Q ss_pred hhhhhhcc----CC-cccHHHHHHhHHHH-HhhhhhhhccccccCceecccCCccccceeecc
Q 043683 198 FEARTQYF----DL-RILEDALQETQLLE-AALWKEILVCLCSFGFCMKCILNQIHNTYSIKC 254 (256)
Q Consensus 198 l~~l~~l~----~l-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~ 254 (256)
++.++.+. .+ ..+|..- ..+... ..+..+...|... .. .|.++...+|..+.+
T Consensus 703 l~~L~~L~ls~N~l~g~iP~~~-~~~~~~~~~~~gN~~Lcg~~--l~-~C~~~~~~~~~~~~~ 761 (768)
T 3rgz_A 703 LTMLTEIDLSNNNLSGPIPEMG-QFETFPPAKFLNNPGLCGYP--LP-RCDPSNADGYAHHQR 761 (768)
T ss_dssp CCCCSEEECCSSEEEEECCSSS-SGGGSCGGGGCSCTEEESTT--SC-CCCSCC---------
T ss_pred CCCCCEEECcCCcccccCCCch-hhccCCHHHhcCCchhcCCC--Cc-CCCCCccCCCCCCCC
Confidence 88877554 12 2233221 111111 1122233445322 22 566777777876654
No 4
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.48 E-value=4.2e-14 Score=122.10 Aligned_cols=157 Identities=20% Similarity=0.176 Sum_probs=93.1
Q ss_pred eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCccccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCc
Q 043683 44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNT 120 (256)
Q Consensus 44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~ 120 (256)
++++++....+.+..|.++ |++|++++|.++.+|....+++|++|++++|.++.+...+.. +..+..+.++++ ++.
T Consensus 36 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-l~~L~~L~l~~N~l~~ 114 (290)
T 1p9a_G 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQT-LPALTVLDVSFNRLTS 114 (290)
T ss_dssp EECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTT-CTTCCEEECCSSCCCC
T ss_pred EEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhcc-CCCCCEEECCCCcCcc
Confidence 3444444444444445544 666666666665555433555666666666655433110000 000000000000 000
Q ss_pred cccccccCCCCCCcEEEccCCCCccccc-cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccccch
Q 043683 121 LVLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSGLF 195 (256)
Q Consensus 121 L~lp~~~~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~~~ 195 (256)
..|..|+.+++|++|++++|+++.+|+ .+..+++|+.|++++ +.++.+|.. +++|++|++++|. +..+|..+
T Consensus 115 -l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~ 191 (290)
T 1p9a_G 115 -LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGF 191 (290)
T ss_dssp -CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred -cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC-CcCCccCHHHhcCcCCCCEEECCCCc-CCccChhh
Confidence 113567888999999999999998875 467889999999998 457788764 6789999998864 77888887
Q ss_pred hchhhhhhc
Q 043683 196 SSFEARTQY 204 (256)
Q Consensus 196 ~~l~~l~~l 204 (256)
.....++.+
T Consensus 192 ~~~~~L~~l 200 (290)
T 1p9a_G 192 FGSHLLPFA 200 (290)
T ss_dssp TTTCCCSEE
T ss_pred cccccCCeE
Confidence 766555543
No 5
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=1.3e-13 Score=116.08 Aligned_cols=136 Identities=24% Similarity=0.310 Sum_probs=97.1
Q ss_pred eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccC
Q 043683 44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLN 119 (256)
Q Consensus 44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~ 119 (256)
++++++....+.+..|.++ |++|++++|.++.+++. + .+++|++|++++|.++.+
T Consensus 40 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--------------------- 98 (251)
T 3m19_A 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL--------------------- 98 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC---------------------
T ss_pred EEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc---------------------
Confidence 4555555555666666666 88888888888877765 5 788888888888887653
Q ss_pred ccccccccCCCCCCcEEEccCCCCcccccc-ccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccccc
Q 043683 120 TLVLPENIGQLSSLGKLDLQKNNFERIPES-VIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSGL 194 (256)
Q Consensus 120 ~L~lp~~~~~l~~L~~L~l~~n~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~~ 194 (256)
.+..++.+++|++|++++|+++.+|+. +..+++|++|++++| .++.+|.. +++|++|++++|......+..
T Consensus 99 ---~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 174 (251)
T 3m19_A 99 ---PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174 (251)
T ss_dssp ---CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ---ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccCHHH
Confidence 134567788888888888888887754 578888888888874 56677653 678888888887543333335
Q ss_pred hhchhhhhhc
Q 043683 195 FSSFEARTQY 204 (256)
Q Consensus 195 ~~~l~~l~~l 204 (256)
+..+++++.+
T Consensus 175 ~~~l~~L~~L 184 (251)
T 3m19_A 175 FDRLGKLQTI 184 (251)
T ss_dssp TTTCTTCCEE
T ss_pred HhCCCCCCEE
Confidence 6666666544
No 6
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.46 E-value=5.4e-14 Score=121.44 Aligned_cols=136 Identities=21% Similarity=0.259 Sum_probs=100.5
Q ss_pred hhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEcc
Q 043683 63 LRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQ 139 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~ 139 (256)
+++|++++|.++.+++ .+ .+++|++|++++|.++.+... .. +..+..+.++++ ++ .+|..+..+++|++|+++
T Consensus 33 l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~-l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GT-LPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp CCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SC-CTTCCEEECCSSCCS--SCCCCTTTCTTCCEEECC
T ss_pred CCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CC-CCcCCEEECCCCcCC--cCchhhccCCCCCEEECC
Confidence 8999999999998865 46 899999999999998865110 00 111111111111 22 447778899999999999
Q ss_pred CCCCcccc-ccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccccc-hhchhhhhhc
Q 043683 140 KNNFERIP-ESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSGL-FSSFEARTQY 204 (256)
Q Consensus 140 ~n~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~~-~~~l~~l~~l 204 (256)
+|+++.+| ..+..+++|++|++++| .++.+|.. +++|+.|++++|. +..+|.. +..+++++.+
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L 177 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTL 177 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEE
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEE
Confidence 99999888 56899999999999984 57777764 6899999999875 6677664 4666666644
No 7
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=2e-13 Score=113.82 Aligned_cols=98 Identities=21% Similarity=0.268 Sum_probs=50.8
Q ss_pred hhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~ 140 (256)
|++|++++|.+..+++ .+ .+++|++|++++|.++.+ .+..+..+++|++|++++
T Consensus 42 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i------------------------~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 42 AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL------------------------PVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC------------------------CTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc------------------------ChhhcccCCCcCEEECCC
Confidence 5666666666555532 34 566666666666665432 012234555555555555
Q ss_pred CCCcccccc-ccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCc
Q 043683 141 NNFERIPES-VIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHC 185 (256)
Q Consensus 141 n~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~ 185 (256)
|+++.+|.. +..+++|++|++++ +.+..+|.. +++|++|++++|
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCSS
T ss_pred CcCCccChhHhCcchhhCeEeccC-CcccccCcccccCCCCCEEECCCC
Confidence 555555432 34555555555554 334455543 455555555554
No 8
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.43 E-value=6.7e-13 Score=112.98 Aligned_cols=157 Identities=24% Similarity=0.349 Sum_probs=101.9
Q ss_pred eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCcc--ccCCccEEeCcCCcchhhHHHH-HHhcccCCCCchhhc-
Q 043683 44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSNI--HLEKLVLLEMPHSNIQQLLDSV-RGILTRTPNTPLGQH- 117 (256)
Q Consensus 44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~~--~l~~L~~L~L~~n~l~~l~~~L-~~Ll~~lp~~~l~~~- 117 (256)
++++......+.+..|.++ |++|++++|.++.+|..+ .+++|++|++++|.++.+.... .. +..+..+.++++
T Consensus 42 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~ 120 (270)
T 2o6q_A 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ-LVNLAELRLDRNQ 120 (270)
T ss_dssp EECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTT-CSSCCEEECCSSC
T ss_pred EECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccc-ccCCCEEECCCCc
Confidence 4445554445555556555 888888888888887764 6888888888888876541100 00 001111111111
Q ss_pred cCccccccccCCCCCCcEEEccCCCCcccccc-ccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccc
Q 043683 118 LNTLVLPENIGQLSSLGKLDLQKNNFERIPES-VIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLS 192 (256)
Q Consensus 118 L~~L~lp~~~~~l~~L~~L~l~~n~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p 192 (256)
++. ..+..++.+++|++|++++|.++.+|.. ++.+++|+.|++++| .+..+|.. +++|++|++++|. +..+|
T Consensus 121 l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~ 197 (270)
T 2o6q_A 121 LKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQ-LKRVP 197 (270)
T ss_dssp CCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC-CSCCC
T ss_pred cCe-eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCc-CCcCC
Confidence 111 1244578899999999999999988854 788999999999984 56777653 6889999999875 55565
Q ss_pred c-chhchhhhhhc
Q 043683 193 G-LFSSFEARTQY 204 (256)
Q Consensus 193 ~-~~~~l~~l~~l 204 (256)
. .+..+++++.+
T Consensus 198 ~~~~~~l~~L~~L 210 (270)
T 2o6q_A 198 EGAFDSLEKLKML 210 (270)
T ss_dssp TTTTTTCTTCCEE
T ss_pred HHHhccccCCCEE
Confidence 5 46666666544
No 9
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.42 E-value=3e-13 Score=127.02 Aligned_cols=131 Identities=22% Similarity=0.255 Sum_probs=78.9
Q ss_pred eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccC
Q 043683 44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLN 119 (256)
Q Consensus 44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~ 119 (256)
+|++.+++..+.+..|.++ |++|++++|.++.+|++ | ++++|++|+|++|+++.+
T Consensus 57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l--------------------- 115 (635)
T 4g8a_A 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL--------------------- 115 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE---------------------
T ss_pred EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC---------------------
Confidence 4444444444555555555 56666666665555543 3 556666666666655432
Q ss_pred ccccccccCCCCCCcEEEccCCCCccccc-cccCCCCCCEEeeccCcCCccc--CCC---CCCCcEEeccCccccccccc
Q 043683 120 TLVLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLCLRYWERLQSL--PKL---PCKLHELDAHHCTALESLSG 193 (256)
Q Consensus 120 ~L~lp~~~~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~l--p~~---l~~L~~L~l~~~~~l~~~p~ 193 (256)
.+..|+++++|++|++++|+++.+|+ .++++++|++|++++|. +..+ |.. +++|++|++++|......|.
T Consensus 116 ---~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 116 ---ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp ---CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred ---CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccc
Confidence 12456778888888888888877764 57788888888887743 4433 333 67788888877654333445
Q ss_pred chhchh
Q 043683 194 LFSSFE 199 (256)
Q Consensus 194 ~~~~l~ 199 (256)
.+..+.
T Consensus 192 ~l~~L~ 197 (635)
T 4g8a_A 192 DLRVLH 197 (635)
T ss_dssp GGHHHH
T ss_pred cccchh
Confidence 554443
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.42 E-value=6.6e-13 Score=113.63 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=31.8
Q ss_pred eeCCCCeeeecChHHHHhh--hhhhhccCCCCCcc-CCcc-ccCCccEEeCcCCc-chhh
Q 043683 44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSL-PSNI-HLEKLVLLEMPHSN-IQQL 98 (256)
Q Consensus 44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~l-p~~~-~l~~L~~L~L~~n~-l~~l 98 (256)
+++++.....+.+..|.++ |++|++++|.++.+ |..+ .+++|++|++++|. ++.+
T Consensus 37 L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~ 96 (285)
T 1ozn_A 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96 (285)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC
T ss_pred EEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc
Confidence 3444444444444455554 77777777776666 3345 66777777777775 5443
No 11
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.41 E-value=4e-13 Score=122.11 Aligned_cols=150 Identities=23% Similarity=0.344 Sum_probs=81.8
Q ss_pred eeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhh----HHH---HHHh-c------ccCCCC
Q 043683 51 EIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQL----LDS---VRGI-L------TRTPNT 112 (256)
Q Consensus 51 ~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l----~~~---L~~L-l------~~lp~~ 112 (256)
...+....|.++ |++|++++|.++.+|+. | .+++|++|++++|.++.+ +.+ |+.| + ..++.-
T Consensus 100 i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 179 (440)
T 3zyj_A 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179 (440)
T ss_dssp CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred CCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc
Confidence 333444455555 77777777777777664 4 677777777777776654 112 2221 1 111111
Q ss_pred chhhc--cCcc--------ccccccCCCCCCcEEEccCCCCccc-cccccCCCCCCEEeeccCcCCcccCCC----CCCC
Q 043683 113 PLGQH--LNTL--------VLPENIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLCLRYWERLQSLPKL----PCKL 177 (256)
Q Consensus 113 ~l~~~--L~~L--------~lp~~~~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L 177 (256)
.+.++ |+.| .+| .+..+++|++|++++|+++.+ |..+.++++|+.|++++| .+..++.. +++|
T Consensus 180 ~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 257 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSL 257 (440)
T ss_dssp TTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTC
T ss_pred hhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCC
Confidence 11111 2222 233 355666677777777776655 456667777777777763 34444432 5677
Q ss_pred cEEeccCccccccccc-chhchhhhhh
Q 043683 178 HELDAHHCTALESLSG-LFSSFEARTQ 203 (256)
Q Consensus 178 ~~L~l~~~~~l~~~p~-~~~~l~~l~~ 203 (256)
++|++++|. +..+|. .+..+.+++.
T Consensus 258 ~~L~L~~N~-l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 258 VEINLAHNN-LTLLPHDLFTPLHHLER 283 (440)
T ss_dssp CEEECTTSC-CCCCCTTTTSSCTTCCE
T ss_pred CEEECCCCC-CCccChhHhccccCCCE
Confidence 777777764 444443 4455555443
No 12
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.41 E-value=4.2e-14 Score=123.26 Aligned_cols=147 Identities=16% Similarity=0.272 Sum_probs=102.8
Q ss_pred HHHHhh--hhhhhccCCCCC-ccCCcc-ccCCccEEeCcCCcchhh----HHHHHHh---------cc-cCCCCchhhc-
Q 043683 57 DTFRKM--LRYFHWHGCPLK-SLPSNI-HLEKLVLLEMPHSNIQQL----LDSVRGI---------LT-RTPNTPLGQH- 117 (256)
Q Consensus 57 ~~f~~l--L~~L~ls~n~l~-~lp~~~-~l~~L~~L~L~~n~l~~l----~~~L~~L---------l~-~lp~~~l~~~- 117 (256)
..|.++ |++|++++|.+. .+|..+ .+++|++|++++|.+++. +.++..| +. .+|.. ++.+
T Consensus 95 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~ 173 (313)
T 1ogq_A 95 PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFS 173 (313)
T ss_dssp GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCC
T ss_pred hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-Hhhhh
Confidence 345555 888888888876 677777 888888888888887743 2222222 11 23321 2221
Q ss_pred --cCcc---------ccccccCCCCCCcEEEccCCCCc-cccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEecc
Q 043683 118 --LNTL---------VLPENIGQLSSLGKLDLQKNNFE-RIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAH 183 (256)
Q Consensus 118 --L~~L---------~lp~~~~~l~~L~~L~l~~n~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~ 183 (256)
|+.| .+|..++.+. |++|++++|.++ .+|..++.+++|+.|++++|.....+|.. +++|++|+++
T Consensus 174 ~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls 252 (313)
T 1ogq_A 174 KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR 252 (313)
T ss_dssp TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECC
T ss_pred hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECc
Confidence 3333 4677777776 888888888887 55677889999999999986654455554 7889999999
Q ss_pred Ccccccccccchhchhhhhhcc
Q 043683 184 HCTALESLSGLFSSFEARTQYF 205 (256)
Q Consensus 184 ~~~~l~~~p~~~~~l~~l~~l~ 205 (256)
+|...+.+|..+..+++++.+.
T Consensus 253 ~N~l~~~~p~~l~~l~~L~~L~ 274 (313)
T 1ogq_A 253 NNRIYGTLPQGLTQLKFLHSLN 274 (313)
T ss_dssp SSCCEECCCGGGGGCTTCCEEE
T ss_pred CCcccCcCChHHhcCcCCCEEE
Confidence 9876668898888887777553
No 13
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.40 E-value=2.4e-13 Score=124.07 Aligned_cols=77 Identities=29% Similarity=0.400 Sum_probs=51.4
Q ss_pred ccCCCCCCcEEEccCCCCccc-cccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccccccccc-chhchh
Q 043683 126 NIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSG-LFSSFE 199 (256)
Q Consensus 126 ~~~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~-~~~~l~ 199 (256)
.+..+++|++|++++|.++.+ |..+.++++|+.|++++|. +..++.. +++|++|++++|. +..+|. .+..+.
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLR 290 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCT
T ss_pred cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCc-CCccChHHhcccc
Confidence 356677777777777777755 4567788888888888744 4554332 6788888888875 445543 455565
Q ss_pred hhhhc
Q 043683 200 ARTQY 204 (256)
Q Consensus 200 ~l~~l 204 (256)
+++.+
T Consensus 291 ~L~~L 295 (452)
T 3zyi_A 291 YLVEL 295 (452)
T ss_dssp TCCEE
T ss_pred CCCEE
Confidence 55543
No 14
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.40 E-value=8.1e-13 Score=109.44 Aligned_cols=114 Identities=24% Similarity=0.327 Sum_probs=61.4
Q ss_pred hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~ 140 (256)
+++|++++|.++.+|+. | .+++|++|++++|.++.+ .|..|.++++|++|++++
T Consensus 34 l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~------------------------~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL------------------------APDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE------------------------CTTTTTTCSSCCEEECCS
T ss_pred CCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc------------------------CHHHhhCCcCCCEEECCC
Confidence 56666666666666553 4 566666666666665532 244555566666666666
Q ss_pred CCCcccccc-ccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccc-cchhchhhhh
Q 043683 141 NNFERIPES-VIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLS-GLFSSFEART 202 (256)
Q Consensus 141 n~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p-~~~~~l~~l~ 202 (256)
|+++.+|.. +..+++|++|++++| .+..++.. +++|++|++++|. +..++ ..+..+.+++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~ 155 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQ 155 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCC
T ss_pred CcCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCC
Confidence 666655543 455666666666653 34444322 4556666666544 33333 2344444443
No 15
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=2.2e-12 Score=105.39 Aligned_cols=117 Identities=24% Similarity=0.344 Sum_probs=67.0
Q ss_pred eCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCc
Q 043683 45 GMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNT 120 (256)
Q Consensus 45 ~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~ 120 (256)
+++++....+....|.++ |++|++++|.++.+|.. + .+++|++|++++|.++.+
T Consensus 34 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------------------- 91 (208)
T 2o6s_A 34 DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL---------------------- 91 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC----------------------
T ss_pred EcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc----------------------
Confidence 333333334444444444 66666666666666554 3 566666666666665432
Q ss_pred cccccccCCCCCCcEEEccCCCCcccccc-ccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcc
Q 043683 121 LVLPENIGQLSSLGKLDLQKNNFERIPES-VIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCT 186 (256)
Q Consensus 121 L~lp~~~~~l~~L~~L~l~~n~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~ 186 (256)
.+..++.+++|++|++++|+++.+|+. +..+++|++|++++| .+..+|.. +++|++|++++|+
T Consensus 92 --~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 92 --PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp --CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred --CHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC
Confidence 122346666777777777777666543 566677777777663 34555542 5667777776664
No 16
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.40 E-value=2.5e-13 Score=123.53 Aligned_cols=159 Identities=17% Similarity=0.257 Sum_probs=105.3
Q ss_pred eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhH-------HHHHHh------c
Q 043683 44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLL-------DSVRGI------L 106 (256)
Q Consensus 44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~-------~~L~~L------l 106 (256)
++++.++...+....|.++ |++|++++|.+..++.. | .+++|++|++++|+++.+. ++|+.| +
T Consensus 69 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i 148 (440)
T 3zyj_A 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148 (440)
T ss_dssp EECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCC
T ss_pred EEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcc
Confidence 5556655556666667776 99999999999888754 5 8999999999999888662 223332 3
Q ss_pred ccCCCCchhhc--cCcc---------ccc-cccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCC-C
Q 043683 107 TRTPNTPLGQH--LNTL---------VLP-ENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPK-L 173 (256)
Q Consensus 107 ~~lp~~~l~~~--L~~L---------~lp-~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~-~ 173 (256)
..++...+..+ |+.| .++ ..|.++++|++|++++|+++.+| .+..+++|+.|++++| .+..++. .
T Consensus 149 ~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~ 226 (440)
T 3zyj_A 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGN-HLSAIRPGS 226 (440)
T ss_dssp CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTS-CCCEECTTT
T ss_pred cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCC-ccCccChhh
Confidence 33333223322 3333 122 35677888888888888888777 4777888888888875 4555533 2
Q ss_pred ---CCCCcEEeccCcccccccccchhchhhhhhc
Q 043683 174 ---PCKLHELDAHHCTALESLSGLFSSFEARTQY 204 (256)
Q Consensus 174 ---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l 204 (256)
+++|++|++++|......+..+..+++|+.+
T Consensus 227 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 260 (440)
T 3zyj_A 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260 (440)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEE
T ss_pred hccCccCCEEECCCCceeEEChhhhcCCCCCCEE
Confidence 6788888888776544445566666666543
No 17
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.39 E-value=3.8e-13 Score=116.23 Aligned_cols=141 Identities=25% Similarity=0.280 Sum_probs=93.0
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhH-----H---HHHHh------cccCCCCchhhc--cCcc----
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLL-----D---SVRGI------LTRTPNTPLGQH--LNTL---- 121 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~-----~---~L~~L------l~~lp~~~l~~~--L~~L---- 121 (256)
|++|++++|.+..+|..+ .+++|++|++++|.++.+. . +|+.| +...+.-.++.+ |+.|
T Consensus 80 L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 80 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159 (306)
T ss_dssp CCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred cCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence 777777777777777767 7777777777777766541 1 12221 111111112211 3333
Q ss_pred ------ccccccCCCCCCcEEEccCCCCccc-cccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccc
Q 043683 122 ------VLPENIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALES 190 (256)
Q Consensus 122 ------~lp~~~~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~ 190 (256)
.+|..++.+++|++|++++|+++.+ |..+..+++|+.|++++| .+..++.. +++|++|++++|.....
T Consensus 160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred CccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCccc
Confidence 2577788888999999998888866 567888899999999884 46666653 67899999998876666
Q ss_pred cccchhch-hhhhhc
Q 043683 191 LSGLFSSF-EARTQY 204 (256)
Q Consensus 191 ~p~~~~~l-~~l~~l 204 (256)
.|..+..+ +++..+
T Consensus 239 ~~~~~~~~~~~L~~L 253 (306)
T 2z66_A 239 KKQELQHFPSSLAFL 253 (306)
T ss_dssp SSSSCCCCCTTCCEE
T ss_pred CHHHHHhhhccCCEE
Confidence 67676665 355543
No 18
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.39 E-value=2.8e-13 Score=119.57 Aligned_cols=134 Identities=17% Similarity=0.227 Sum_probs=77.3
Q ss_pred eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccC
Q 043683 44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLN 119 (256)
Q Consensus 44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~ 119 (256)
+++++++...+....|.++ |++|++++|.++.+++. + .+++|++|++++|.++.+
T Consensus 57 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--------------------- 115 (353)
T 2z80_A 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL--------------------- 115 (353)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC---------------------
T ss_pred EECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC---------------------
Confidence 3444444444444455555 77777777776666543 5 677777777777776643
Q ss_pred ccccccc-cCCCCCCcEEEccCCCCccccc--cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccc
Q 043683 120 TLVLPEN-IGQLSSLGKLDLQKNNFERIPE--SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLS 192 (256)
Q Consensus 120 ~L~lp~~-~~~l~~L~~L~l~~n~l~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p 192 (256)
|.. ++.+++|++|++++|+++.+|. .+..+++|++|++++|+.++.++.. +++|++|++++|......|
T Consensus 116 ----~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 116 ----SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp ----CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred ----CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 322 5566666666666666666654 4566666666666665445555432 4556666666655434445
Q ss_pred cchhchhhhh
Q 043683 193 GLFSSFEART 202 (256)
Q Consensus 193 ~~~~~l~~l~ 202 (256)
..++.+++++
T Consensus 192 ~~l~~l~~L~ 201 (353)
T 2z80_A 192 KSLKSIQNVS 201 (353)
T ss_dssp TTTTTCSEEE
T ss_pred HHHhccccCC
Confidence 5555544444
No 19
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.39 E-value=7e-13 Score=120.92 Aligned_cols=159 Identities=16% Similarity=0.228 Sum_probs=89.2
Q ss_pred eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhh----H---HHHHHh------c
Q 043683 44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQL----L---DSVRGI------L 106 (256)
Q Consensus 44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l----~---~~L~~L------l 106 (256)
++++++....+.+..|.++ |++|++++|.++.+++. | .+++|++|+|++|.++.+ + ++|+.| +
T Consensus 80 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 159 (452)
T 3zyi_A 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI 159 (452)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCC
T ss_pred EECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCc
Confidence 4445444444555555555 66666666666655533 4 566666666666665544 1 122222 2
Q ss_pred ccCCCCchhhc--cCcc---------ccc-cccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCC-C
Q 043683 107 TRTPNTPLGQH--LNTL---------VLP-ENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPK-L 173 (256)
Q Consensus 107 ~~lp~~~l~~~--L~~L---------~lp-~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~-~ 173 (256)
..+|...+..+ |+.| .++ ..+..+++|++|++++|+++.+| .+..+.+|+.|++++|. +..++. .
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~ 237 (452)
T 3zyi_A 160 ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNH-FPEIRPGS 237 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSC-CSEECGGG
T ss_pred ceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCc-CcccCccc
Confidence 22222212222 2222 122 24667778888888888877776 56777788888888744 444433 2
Q ss_pred ---CCCCcEEeccCcccccccccchhchhhhhhc
Q 043683 174 ---PCKLHELDAHHCTALESLSGLFSSFEARTQY 204 (256)
Q Consensus 174 ---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l 204 (256)
+++|++|++++|......|..+..+.+++.+
T Consensus 238 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 238 FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271 (452)
T ss_dssp GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence 6778888887766544445566666655543
No 20
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.39 E-value=3.3e-13 Score=114.97 Aligned_cols=159 Identities=24% Similarity=0.360 Sum_probs=94.0
Q ss_pred eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhh----HHH---HHHh------c
Q 043683 44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQL----LDS---VRGI------L 106 (256)
Q Consensus 44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l----~~~---L~~L------l 106 (256)
++++++....+....|.++ |++|++++|.++.+++. + .+++|++|++++|.++.+ +.+ |+.| +
T Consensus 33 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 112 (276)
T 2z62_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112 (276)
T ss_dssp EECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCc
Confidence 4445555445555556555 77777777777777653 5 677777777777777654 122 2222 2
Q ss_pred ccCCCCchhhc--cCcc----------ccccccCCCCCCcEEEccCCCCcccc-ccccCCCCCC----EEeeccCcCCcc
Q 043683 107 TRTPNTPLGQH--LNTL----------VLPENIGQLSSLGKLDLQKNNFERIP-ESVIQLSKLG----RLCLRYWERLQS 169 (256)
Q Consensus 107 ~~lp~~~l~~~--L~~L----------~lp~~~~~l~~L~~L~l~~n~l~~lp-~~i~~l~~L~----~L~l~~~~~l~~ 169 (256)
..++...++.+ |+.| .+|..++.+++|++|++++|+++.++ ..+..+.+|+ .|++++ +.+..
T Consensus 113 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~-n~l~~ 191 (276)
T 2z62_A 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL-NPMNF 191 (276)
T ss_dssp CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS-SCCCE
T ss_pred cccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC-Ccccc
Confidence 22222222222 2222 35677777777777777777777665 3555555555 677776 34556
Q ss_pred cCCC---CCCCcEEeccCcccccccccc-hhchhhhhhc
Q 043683 170 LPKL---PCKLHELDAHHCTALESLSGL-FSSFEARTQY 204 (256)
Q Consensus 170 lp~~---l~~L~~L~l~~~~~l~~~p~~-~~~l~~l~~l 204 (256)
+|.. ..+|++|++++|. +..+|.. +..+++++.+
T Consensus 192 ~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 229 (276)
T 2z62_A 192 IQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKI 229 (276)
T ss_dssp ECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEE
T ss_pred cCccccCCCcccEEECCCCc-eeecCHhHhcccccccEE
Confidence 6554 4478899998876 5566554 4666666544
No 21
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.39 E-value=8.8e-13 Score=109.23 Aligned_cols=119 Identities=21% Similarity=0.257 Sum_probs=97.7
Q ss_pred EeeCCCCeeeecChHHHHhh--hhhhhccCCCCCcc-CCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhcc
Q 043683 43 CLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSL-PSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHL 118 (256)
Q Consensus 43 ~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~l-p~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L 118 (256)
.+++++++...+.+..|.++ |++|++++|.++.+ |..| .+++|++|+|++|.++.+
T Consensus 36 ~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-------------------- 95 (220)
T 2v9t_B 36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL-------------------- 95 (220)
T ss_dssp EEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC--------------------
T ss_pred EEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc--------------------
Confidence 34556666566666677776 99999999999988 5567 999999999999998753
Q ss_pred Ccccccc-ccCCCCCCcEEEccCCCCcccc-ccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccc
Q 043683 119 NTLVLPE-NIGQLSSLGKLDLQKNNFERIP-ESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTA 187 (256)
Q Consensus 119 ~~L~lp~-~~~~l~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~ 187 (256)
|. .|..+++|++|++++|+++.++ ..+..+++|+.|++++ +.+..++.. +++|++|++++|+.
T Consensus 96 -----~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 96 -----PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp -----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred -----CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 43 4688999999999999999775 6799999999999998 457777753 78999999998763
No 22
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.38 E-value=2.1e-13 Score=116.32 Aligned_cols=139 Identities=24% Similarity=0.362 Sum_probs=84.3
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHH-HHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEcc
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDS-VRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQ 139 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~-L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~ 139 (256)
|++|++++|.+..++ .+ .+++|++|++++|.++++.+. +.. +..+..+.++++ ++. ..+..++.+++|++|+++
T Consensus 65 L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~ 141 (272)
T 3rfs_A 65 VRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDK-LTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLA 141 (272)
T ss_dssp CCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECC
T ss_pred CcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcC-CcCCCEEECCCCcCCc-cCHHHhccCCCCCEEECC
Confidence 666666666666554 44 666666666666665543110 000 000011111111 110 123446888999999999
Q ss_pred CCCCccccc-cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccccchhchhhhhhcc
Q 043683 140 KNNFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSGLFSSFEARTQYF 205 (256)
Q Consensus 140 ~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l~ 205 (256)
+|+++.+|+ .++.+++|+.|++++|. +..+|.. +++|++|++++|......|..++.+++++.+.
T Consensus 142 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 211 (272)
T 3rfs_A 142 HNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 211 (272)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEE
Confidence 999998875 46889999999999854 6666653 78899999998764444444567776666543
No 23
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=2e-13 Score=131.95 Aligned_cols=110 Identities=19% Similarity=0.255 Sum_probs=91.4
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN 141 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n 141 (256)
|++|++++|.+..+|..+ .+++|++|+|++|.|+. +|.+|+.+++|++|+|++|
T Consensus 226 L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~-------------------------lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 226 WHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTE-------------------------LPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp CCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSC-------------------------CCGGGGGGTTCCEEECTTS
T ss_pred CcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcc-------------------------cChhhhCCCCCCEEeCcCC
Confidence 777778777777777776 77778888888777763 4888899999999999999
Q ss_pred CCccccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhch
Q 043683 142 NFERIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSF 198 (256)
Q Consensus 142 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l 198 (256)
.++.+|..++.+++|++|+|++| .++.+|.. +++|++|++++|...+.+|..+..+
T Consensus 281 ~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 281 RLTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp CCSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred cCCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 99999999999999999999984 57899875 7899999999988666777777543
No 24
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.38 E-value=9.4e-13 Score=112.25 Aligned_cols=125 Identities=27% Similarity=0.338 Sum_probs=88.7
Q ss_pred hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHH-HHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEc
Q 043683 63 LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDS-VRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDL 138 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~-L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l 138 (256)
|++|++++|.++.+|+. + .+++|++|++++|.++.+.+. +.. +..+..+.++++ ++. ..+..++.+++|++|++
T Consensus 87 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK-LTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDL 164 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhcc-CCCCCEEECCCCccCc-cCHHHhccCccCCEEEC
Confidence 89999999999888876 4 789999999999988765211 111 111111111111 111 12344688999999999
Q ss_pred cCCCCccccc-cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccc
Q 043683 139 QKNNFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALES 190 (256)
Q Consensus 139 ~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~ 190 (256)
++|+++.+|+ .++.+++|++|++++|. +..+|.. +++|++|++++|+....
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCCcccc
Confidence 9999998875 46899999999999855 6666653 78999999999875443
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.38 E-value=9.6e-13 Score=123.54 Aligned_cols=118 Identities=24% Similarity=0.258 Sum_probs=99.3
Q ss_pred hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~ 140 (256)
+++|++++|.|+.+|+. | ++++|++|+|++|+|+.+ .|.+|+++++|++|+|++
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i------------------------~~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI------------------------EDGAYQSLSHLSTLILTG 109 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE------------------------CTTTTTTCTTCCEEECTT
T ss_pred CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc------------------------ChhHhcCCCCCCEEEccC
Confidence 89999999999999864 7 999999999999998764 245689999999999999
Q ss_pred CCCccccc-cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccccc-ccccchhchhhhhhcc
Q 043683 141 NNFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALE-SLSGLFSSFEARTQYF 205 (256)
Q Consensus 141 n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~-~~p~~~~~l~~l~~l~ 205 (256)
|+++.+|+ .|.++++|++|++++| .+..+|.. +++|++|++++|.... .+|..++.++.++.+.
T Consensus 110 N~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 179 (635)
T 4g8a_A 110 NPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 179 (635)
T ss_dssp CCCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred CcCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhc
Confidence 99999985 6899999999999985 57778764 7899999999976432 4577778777776543
No 26
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=2e-12 Score=105.67 Aligned_cols=117 Identities=27% Similarity=0.400 Sum_probs=95.5
Q ss_pred hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~ 140 (256)
+++|++++|.++.+|+. + .+++|++|++++|+++.+ .+..+..+++|++|++++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL------------------------PNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC------------------------CTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc------------------------ChhhcCCCCCcCEEECCC
Confidence 89999999999999876 5 899999999999998753 133468899999999999
Q ss_pred CCCcccccc-ccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccccccccc-chhchhhhhhcc
Q 043683 141 NNFERIPES-VIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSG-LFSSFEARTQYF 205 (256)
Q Consensus 141 n~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~-~~~~l~~l~~l~ 205 (256)
|+++.+|.. ++.+++|++|++++| .+..+|.. +++|++|++++|. +..+|. .+..+++++.+.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEE
T ss_pred CcCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEE
Confidence 999988854 789999999999985 57777763 7899999999976 555555 467777766543
No 27
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.37 E-value=1.8e-12 Score=107.88 Aligned_cols=120 Identities=21% Similarity=0.301 Sum_probs=100.6
Q ss_pred EeeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhcc
Q 043683 43 CLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHL 118 (256)
Q Consensus 43 ~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L 118 (256)
.++++++....+.+..|.++ |++|++++|.++.+|.. + .+++|++|+|++|.++.+
T Consensus 44 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-------------------- 103 (229)
T 3e6j_A 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-------------------- 103 (229)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC--------------------
T ss_pred EEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc--------------------
Confidence 35556666666666667776 99999999999999976 4 899999999999998753
Q ss_pred CccccccccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccc
Q 043683 119 NTLVLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTA 187 (256)
Q Consensus 119 ~~L~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~ 187 (256)
.+..+..+++|++|++++|+++.+|..+..+++|+.|++++ +.+..+|.. +++|+.|++++|+.
T Consensus 104 ----~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 104 ----PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp ----CTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred ----ChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 13446889999999999999999999999999999999998 567788754 78999999998764
No 28
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.36 E-value=2.2e-12 Score=106.83 Aligned_cols=117 Identities=14% Similarity=0.180 Sum_probs=71.8
Q ss_pred hhhhhccCCCCCccCC-c-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEcc
Q 043683 63 LRYFHWHGCPLKSLPS-N-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQ 139 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~-~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~ 139 (256)
+++|++++|.++.+++ . | .+++|++|++++|.++.+ .+..|+.+++|++|+++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i------------------------~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI------------------------EEGAFEGASGVNEILLT 89 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE------------------------CTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE------------------------CHHHhCCCCCCCEEECC
Confidence 5677777777776643 2 4 677777777777776643 13355667777777777
Q ss_pred CCCCccccc-cccCCCCCCEEeeccCcCCcccC-CC---CCCCcEEeccCcccccccccchhchhhhhhc
Q 043683 140 KNNFERIPE-SVIQLSKLGRLCLRYWERLQSLP-KL---PCKLHELDAHHCTALESLSGLFSSFEARTQY 204 (256)
Q Consensus 140 ~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp-~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l 204 (256)
+|+++.+|+ .++.+++|++|++++|. +..++ .. +++|++|++++|......|..+..+++++.+
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 777776654 46667777777777633 44443 22 5667777777655333335566665555543
No 29
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.36 E-value=4.4e-13 Score=115.79 Aligned_cols=159 Identities=19% Similarity=0.231 Sum_probs=101.6
Q ss_pred eeCCCCeeeecChHHHHhh--hhhhhccCCCCCcc---CCcc-ccCCccEEeCcCCcchhh------HHHHHHh------
Q 043683 44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSL---PSNI-HLEKLVLLEMPHSNIQQL------LDSVRGI------ 105 (256)
Q Consensus 44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~l---p~~~-~l~~L~~L~L~~n~l~~l------~~~L~~L------ 105 (256)
+++++.....+....|.++ |++|++++|.++.+ |..+ .+++|++|++++|.++.+ +++|+.|
T Consensus 33 L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~ 112 (306)
T 2z66_A 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 112 (306)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE
T ss_pred EECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCc
Confidence 4555555556666667666 89999999988765 4555 789999999999988765 2233333
Q ss_pred cccCCCC-chhhc--cCcc---------ccccccCCCCCCcEEEccCCCCcc--ccccccCCCCCCEEeeccCcCCccc-
Q 043683 106 LTRTPNT-PLGQH--LNTL---------VLPENIGQLSSLGKLDLQKNNFER--IPESVIQLSKLGRLCLRYWERLQSL- 170 (256)
Q Consensus 106 l~~lp~~-~l~~~--L~~L---------~lp~~~~~l~~L~~L~l~~n~l~~--lp~~i~~l~~L~~L~l~~~~~l~~l- 170 (256)
+..++.. .+..+ |+.| ..|..++.+++|++|++++|.++. +|..+..+++|++|++++|. +..+
T Consensus 113 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~ 191 (306)
T 2z66_A 113 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLS 191 (306)
T ss_dssp EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEEC
T ss_pred ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcC
Confidence 2333321 12222 3433 345557777888888888887764 67777888888888888754 4555
Q ss_pred CCC---CCCCcEEeccCcccccccccchhchhhhhh
Q 043683 171 PKL---PCKLHELDAHHCTALESLSGLFSSFEARTQ 203 (256)
Q Consensus 171 p~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~ 203 (256)
|.. +++|++|++++|......+..+..+.+++.
T Consensus 192 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 227 (306)
T 2z66_A 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227 (306)
T ss_dssp TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred HHHhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence 333 677888888876533333335555555553
No 30
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.36 E-value=1.9e-12 Score=108.93 Aligned_cols=119 Identities=25% Similarity=0.321 Sum_probs=96.7
Q ss_pred eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccC
Q 043683 44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLN 119 (256)
Q Consensus 44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~ 119 (256)
+++++++...+.+..|.++ |++|++++|.++.+|+. + .+++|++|++++|.++.+
T Consensus 64 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------------------- 122 (251)
T 3m19_A 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSL--------------------- 122 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---------------------
T ss_pred EECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCc---------------------
Confidence 4455555555555556666 99999999999999876 4 899999999999998753
Q ss_pred ccccccccCCCCCCcEEEccCCCCccccc-cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccc
Q 043683 120 TLVLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTA 187 (256)
Q Consensus 120 ~L~lp~~~~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~ 187 (256)
.+..++.+++|++|++++|+++.+|+ .++.+++|++|++++| .+..+|.. +++|++|++++|+.
T Consensus 123 ---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 123 ---PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp ---CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred ---ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCce
Confidence 13346889999999999999999886 6899999999999985 56777753 78999999999764
No 31
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.36 E-value=1.4e-13 Score=119.84 Aligned_cols=163 Identities=19% Similarity=0.235 Sum_probs=91.8
Q ss_pred CccceeEeeCCCCeeeecChHHHHhh--hhhhhccC-CCC-CccCCcc-ccCCccEEeCcCCcchhh-HHHHHHhcccCC
Q 043683 37 ILIEGICLGMSKVKEIHLNPDTFRKM--LRYFHWHG-CPL-KSLPSNI-HLEKLVLLEMPHSNIQQL-LDSVRGILTRTP 110 (256)
Q Consensus 37 ~~~~~~~l~l~~l~~~~l~~~~f~~l--L~~L~ls~-n~l-~~lp~~~-~l~~L~~L~L~~n~l~~l-~~~L~~Ll~~lp 110 (256)
+.+..+.+.-..+.....-+..|.++ |++|++++ |.+ +.+|..+ .+++|++|++++|.+++. +..+.. +..+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-CTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC-CCCCC
Confidence 45555554433332110234566666 99999995 775 4788889 999999999999999743 222222 11111
Q ss_pred CCchhhc-cCccccccccCCCCCCcEEEccCCCCc-cccccccCCC-CCCEEeeccCcCCcccCCC---CCCCcEEeccC
Q 043683 111 NTPLGQH-LNTLVLPENIGQLSSLGKLDLQKNNFE-RIPESVIQLS-KLGRLCLRYWERLQSLPKL---PCKLHELDAHH 184 (256)
Q Consensus 111 ~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~n~l~-~lp~~i~~l~-~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~ 184 (256)
.+.++++ ++. .+|..++.+++|++|++++|+++ .+|..++.+. +|++|++++|...+.+|.. +. |++|++++
T Consensus 129 ~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSG-TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEES-CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred EEeCCCCccCC-cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 1111111 000 24556666666666666666666 6666666665 6666666664433344443 22 56666665
Q ss_pred cccccccccchhchhhhh
Q 043683 185 CTALESLSGLFSSFEART 202 (256)
Q Consensus 185 ~~~l~~~p~~~~~l~~l~ 202 (256)
|......|..+..+++++
T Consensus 207 N~l~~~~~~~~~~l~~L~ 224 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQ 224 (313)
T ss_dssp SEEEECCGGGCCTTSCCS
T ss_pred CcccCcCCHHHhcCCCCC
Confidence 544444555555444444
No 32
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.36 E-value=1.9e-12 Score=107.22 Aligned_cols=120 Identities=18% Similarity=0.220 Sum_probs=96.8
Q ss_pred EeeCCCCeeeecC-hHHHHhh--hhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc
Q 043683 43 CLGMSKVKEIHLN-PDTFRKM--LRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH 117 (256)
Q Consensus 43 ~l~l~~l~~~~l~-~~~f~~l--L~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~ 117 (256)
.++++.++...+. ...|.++ |++|++++|.++.+++ .| .+++|++|++++|.++.+
T Consensus 36 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~------------------- 96 (220)
T 2v70_A 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV------------------- 96 (220)
T ss_dssp EEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-------------------
T ss_pred EEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-------------------
Confidence 3555555554542 3446666 9999999999999987 46 899999999999999764
Q ss_pred cCccccccccCCCCCCcEEEccCCCCccc-cccccCCCCCCEEeeccCcCCccc-CCC---CCCCcEEeccCccc
Q 043683 118 LNTLVLPENIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLCLRYWERLQSL-PKL---PCKLHELDAHHCTA 187 (256)
Q Consensus 118 L~~L~lp~~~~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~l-p~~---l~~L~~L~l~~~~~ 187 (256)
.|..|+.+++|++|++++|+++.+ |..+..+++|+.|++++| .+..+ |.. +++|++|++++|+.
T Consensus 97 -----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 97 -----QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp -----CGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred -----CHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCC
Confidence 245578999999999999999977 578999999999999985 46666 443 78999999998764
No 33
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.36 E-value=1e-12 Score=106.78 Aligned_cols=135 Identities=17% Similarity=0.234 Sum_probs=76.8
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~ 140 (256)
|++|++++|.++.+| .+ .+++|++|++++|.++.+ +.+.. +..+..+.++++ ++. ..|..++.+++|++|++++
T Consensus 46 L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~-~~l~~-l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 46 LTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY-NPISG-LSNLERLRIMGKDVTS-DKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp CCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC-GGGTT-CTTCCEEEEECTTCBG-GGSCCCTTCTTCCEEECCS
T ss_pred ccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc-hhhhc-CCCCCEEEeECCccCc-ccChhhcCCCCCCEEEecC
Confidence 555556655555555 44 555666666655544322 00000 000000000000 000 1356677888888888888
Q ss_pred CCCcc-ccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccchhchhhhhh
Q 043683 141 NNFER-IPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFEARTQ 203 (256)
Q Consensus 141 n~l~~-lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~ 203 (256)
|+++. .|..++.+++|++|++++|..++.+|.. +++|++|++++|. +..++ .+..+++++.
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~ 185 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQ 185 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCE
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChH-HhccCCCCCE
Confidence 88874 5667888888888888886557777754 7788888888765 45555 4445544443
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.35 E-value=6.6e-13 Score=116.00 Aligned_cols=157 Identities=18% Similarity=0.316 Sum_probs=88.1
Q ss_pred eeCCCCeeeecChHHHHhh--hhhhhccCCCCCcc-CCcc-ccCCccEEeCcCCcchhh----HHHHHHh------cccC
Q 043683 44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSL-PSNI-HLEKLVLLEMPHSNIQQL----LDSVRGI------LTRT 109 (256)
Q Consensus 44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~l-p~~~-~l~~L~~L~L~~n~l~~l----~~~L~~L------l~~l 109 (256)
+++++++...+.+..|.++ |++|++++|.++.+ |..+ .+++|++|++++|.++.+ +++|+.| ++.+
T Consensus 57 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~ 136 (330)
T 1xku_A 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV 136 (330)
T ss_dssp EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBB
T ss_pred EECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCccccc
Confidence 4555555555555556665 88888888887776 5556 778888888888877654 2223332 1111
Q ss_pred C-----------CCc---------------hhhc--cCcc--------ccccccCCCCCCcEEEccCCCCccc-cccccC
Q 043683 110 P-----------NTP---------------LGQH--LNTL--------VLPENIGQLSSLGKLDLQKNNFERI-PESVIQ 152 (256)
Q Consensus 110 p-----------~~~---------------l~~~--L~~L--------~lp~~~~~l~~L~~L~l~~n~l~~l-p~~i~~ 152 (256)
+ .+. ++++ |+.| .+|..+. ++|++|++++|+++.+ |..+..
T Consensus 137 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~ 214 (330)
T 1xku_A 137 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKG 214 (330)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTT
T ss_pred CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcC
Confidence 1 000 1111 2222 2233222 4566666666666644 356667
Q ss_pred CCCCCEEeeccCcCCcccCC-C---CCCCcEEeccCcccccccccchhchhhhhhc
Q 043683 153 LSKLGRLCLRYWERLQSLPK-L---PCKLHELDAHHCTALESLSGLFSSFEARTQY 204 (256)
Q Consensus 153 l~~L~~L~l~~~~~l~~lp~-~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l 204 (256)
+++|+.|++++|. +..++. . +++|++|++++|. +..+|..+..+++++.+
T Consensus 215 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L 268 (330)
T 1xku_A 215 LNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVV 268 (330)
T ss_dssp CTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEE
T ss_pred CCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEE
Confidence 7777777777643 444443 2 5677777777753 55677766666555543
No 35
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.34 E-value=3.1e-12 Score=103.91 Aligned_cols=99 Identities=19% Similarity=0.291 Sum_probs=84.2
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN 141 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n 141 (256)
+++|++++|.++.+|..+ .+++|++|++++|.++.+ .+..|.++++|++|++++|
T Consensus 33 l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i------------------------~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 33 VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL------------------------SNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp CCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC------------------------CTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe------------------------CHhHccCCCCCCEEECCCC
Confidence 889999999999999888 899999999999998753 2456788999999999999
Q ss_pred CCccccc-cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcc
Q 043683 142 NFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCT 186 (256)
Q Consensus 142 ~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~ 186 (256)
+++.+|+ .+..+++|+.|++++ +.+..+|.. +++|++|++++|+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCC
Confidence 9998874 688999999999998 557778764 7789999999875
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.34 E-value=2e-12 Score=121.66 Aligned_cols=120 Identities=19% Similarity=0.217 Sum_probs=68.3
Q ss_pred EeeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhcc
Q 043683 43 CLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHL 118 (256)
Q Consensus 43 ~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L 118 (256)
.++++++....+.+..|.++ |++|++++|.++.+++ .| .+++|++|++++|.++.+
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~-------------------- 95 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF-------------------- 95 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC--------------------
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc--------------------
Confidence 34556665556666667766 8888888888877754 46 788888888888887653
Q ss_pred CccccccccCCCCCCcEEEccCCCCcccc-ccccCCCCCCEEeeccCcCCc-ccCCC---CCCCcEEeccCcc
Q 043683 119 NTLVLPENIGQLSSLGKLDLQKNNFERIP-ESVIQLSKLGRLCLRYWERLQ-SLPKL---PCKLHELDAHHCT 186 (256)
Q Consensus 119 ~~L~lp~~~~~l~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~~~~l~-~lp~~---l~~L~~L~l~~~~ 186 (256)
.|.+|+++++|++|++++|+++.+| ..++++++|++|++++|.... .+|.. +++|++|++++|.
T Consensus 96 ----~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 96 ----SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp ----CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred ----ChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 1334444455555555555444443 344445555555554432111 23332 4444555554443
No 37
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.33 E-value=2.7e-12 Score=109.76 Aligned_cols=156 Identities=22% Similarity=0.304 Sum_probs=94.9
Q ss_pred eeCCCCeeeecChHHHHhh--hhhhhccCCC-CCccC-Ccc-ccCCccEEeCcCCcchhhHH-HHHHhcccCCCCchhhc
Q 043683 44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCP-LKSLP-SNI-HLEKLVLLEMPHSNIQQLLD-SVRGILTRTPNTPLGQH 117 (256)
Q Consensus 44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~-l~~lp-~~~-~l~~L~~L~L~~n~l~~l~~-~L~~Ll~~lp~~~l~~~ 117 (256)
++++++....+.+..|.++ |++|++++|. ++.++ ..+ .+++|++|++++|.++.+.+ .+.. +..+..+.++++
T Consensus 61 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n 139 (285)
T 1ozn_A 61 LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG-LAALQYLYLQDN 139 (285)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECCSS
T ss_pred EECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhC-CcCCCEEECCCC
Confidence 3444444444555566666 9999999997 88884 456 89999999999998876411 0111 011111111111
Q ss_pred -cCccccc-cccCCCCCCcEEEccCCCCccccc-cccCCCCCCEEeeccCcCCccc-CCC---CCCCcEEeccCcccccc
Q 043683 118 -LNTLVLP-ENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLCLRYWERLQSL-PKL---PCKLHELDAHHCTALES 190 (256)
Q Consensus 118 -L~~L~lp-~~~~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~l-p~~---l~~L~~L~l~~~~~l~~ 190 (256)
++ .+| ..++.+++|++|++++|+++.+|. .+..+++|+.|++++|. +..+ |.. +++|++|++++|. +..
T Consensus 140 ~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~ 215 (285)
T 1ozn_A 140 ALQ--ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANN-LSA 215 (285)
T ss_dssp CCC--CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSC
T ss_pred ccc--ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCCc-CCc
Confidence 11 122 346777788888888888877765 47777888888888754 4444 433 6678888888765 333
Q ss_pred cc-cchhchhhhhhc
Q 043683 191 LS-GLFSSFEARTQY 204 (256)
Q Consensus 191 ~p-~~~~~l~~l~~l 204 (256)
+| ..+..+++++.+
T Consensus 216 ~~~~~~~~l~~L~~L 230 (285)
T 1ozn_A 216 LPTEALAPLRALQYL 230 (285)
T ss_dssp CCHHHHTTCTTCCEE
T ss_pred CCHHHcccCcccCEE
Confidence 44 446666555543
No 38
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.33 E-value=3.8e-13 Score=116.10 Aligned_cols=130 Identities=19% Similarity=0.320 Sum_probs=71.1
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~ 140 (256)
|++|++++|.++.+++ + .+++|++|++++|.++.+. .+.. +..+..+.++++ ++.+ ..++.+++|++|++++
T Consensus 70 L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~-l~~L~~L~L~~n~i~~~---~~l~~l~~L~~L~l~~ 143 (291)
T 1h6t_A 70 VTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKD-LKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGN 143 (291)
T ss_dssp CCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTT-CTTCCEEECTTSCCCCC---GGGGGCTTCCEEECCS
T ss_pred CCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh-hhcc-CCCCCEEECCCCcCCCC---hhhcCCCCCCEEEccC
Confidence 8888888888888776 6 7888888888888876641 1111 111111112221 1111 2345556666666666
Q ss_pred CCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccchhchhhhh
Q 043683 141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFEART 202 (256)
Q Consensus 141 n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~~~l~~l~ 202 (256)
|+++.+ +.++.+++|+.|++++| .+..++.. +++|++|++++|. +..+|. +..+++++
T Consensus 144 n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~L~~N~-i~~l~~-l~~l~~L~ 203 (291)
T 1h6t_A 144 NKITDI-TVLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKNH-ISDLRA-LAGLKNLD 203 (291)
T ss_dssp SCCCCC-GGGGGCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCS
T ss_pred CcCCcc-hhhccCCCCCEEEccCC-ccccchhhcCCCccCEEECCCCc-CCCChh-hccCCCCC
Confidence 666655 35566666666666653 34444333 5566666666543 444443 34443333
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.33 E-value=1e-12 Score=114.95 Aligned_cols=71 Identities=23% Similarity=0.281 Sum_probs=41.3
Q ss_pred CCCcEEEccCCCCcccc-ccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccccchhchhhhhh
Q 043683 131 SSLGKLDLQKNNFERIP-ESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSGLFSSFEARTQ 203 (256)
Q Consensus 131 ~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~ 203 (256)
++|++|++++|.++.++ ..+..+++|+.|++++| .+..++.. +++|++|++++|. +..+|..+..+++++.
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~ 268 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQV 268 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCE
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCE
Confidence 35556666666665544 45666666666666663 34444432 5666777776653 5566666665555543
No 40
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.33 E-value=3.2e-12 Score=103.57 Aligned_cols=101 Identities=20% Similarity=0.254 Sum_probs=81.6
Q ss_pred hhhhhccCCCCCccCCc--c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEcc
Q 043683 63 LRYFHWHGCPLKSLPSN--I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQ 139 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~--~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~ 139 (256)
+++|++++|.++.+++. + .+++|++|++++|.++++ .|..|+.+++|++|+++
T Consensus 31 l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~------------------------~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 31 TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI------------------------EPNAFEGASHIQELQLG 86 (192)
T ss_dssp CSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB------------------------CTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc------------------------CHhHcCCcccCCEEECC
Confidence 88899999999888864 6 889999999999988753 36678889999999999
Q ss_pred CCCCccccc-cccCCCCCCEEeeccCcCCccc-CCC---CCCCcEEeccCcccc
Q 043683 140 KNNFERIPE-SVIQLSKLGRLCLRYWERLQSL-PKL---PCKLHELDAHHCTAL 188 (256)
Q Consensus 140 ~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~l-p~~---l~~L~~L~l~~~~~l 188 (256)
+|+++.++. .+..+++|++|++++|. +..+ |.. +++|++|++++|+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999997764 58889999999999855 4444 543 778999999987643
No 41
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.33 E-value=8.1e-13 Score=124.38 Aligned_cols=105 Identities=25% Similarity=0.306 Sum_probs=89.6
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN 141 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n 141 (256)
|++|++++|.++.+|. + .+++|++|++++|.++. +|..++.+++|++|++++|
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~-------------------------lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRA-------------------------LPPALAALRCLEVLQASDN 496 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCC-------------------------CCGGGGGCTTCCEEECCSS
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCcccccc-------------------------cchhhhcCCCCCEEECCCC
Confidence 7789999999999987 8 89999999999999874 3888899999999999999
Q ss_pred CCccccccccCCCCCCEEeeccCcCCccc--CCC---CCCCcEEeccCcccccccccchh
Q 043683 142 NFERIPESVIQLSKLGRLCLRYWERLQSL--PKL---PCKLHELDAHHCTALESLSGLFS 196 (256)
Q Consensus 142 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~l--p~~---l~~L~~L~l~~~~~l~~~p~~~~ 196 (256)
+++.+| .++.+++|+.|++++| .+..+ |.. +++|+.|++++|. +..+|+...
T Consensus 497 ~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~ 553 (567)
T 1dce_A 497 ALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQE 553 (567)
T ss_dssp CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTT
T ss_pred CCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHH
Confidence 999998 8999999999999985 46666 654 8899999999976 555655443
No 42
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.33 E-value=8.6e-13 Score=122.58 Aligned_cols=136 Identities=19% Similarity=0.252 Sum_probs=92.0
Q ss_pred EeeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhcc
Q 043683 43 CLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHL 118 (256)
Q Consensus 43 ~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L 118 (256)
.++++.++...+.+..|.++ |++|++++|.++.+++ .| .+++|++|++++|.++++
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------------------- 89 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-------------------- 89 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC--------------------
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc--------------------
Confidence 34555555555555666666 9999999999888775 46 889999999999988764
Q ss_pred CccccccccCCCCCCcEEEccCCCCcc--ccccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccc
Q 043683 119 NTLVLPENIGQLSSLGKLDLQKNNFER--IPESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLS 192 (256)
Q Consensus 119 ~~L~lp~~~~~l~~L~~L~l~~n~l~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p 192 (256)
.|..++.+++|++|++++|.++. +|..++++++|++|++++|..++.+|.. +++|++|++++|......|
T Consensus 90 ----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 90 ----SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp ----CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred ----CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 13336677777777777777763 3456777777777777766556666532 5667777777666555566
Q ss_pred cchhchhhhh
Q 043683 193 GLFSSFEART 202 (256)
Q Consensus 193 ~~~~~l~~l~ 202 (256)
..++.+++++
T Consensus 166 ~~l~~l~~L~ 175 (549)
T 2z81_A 166 QSLKSIRDIH 175 (549)
T ss_dssp TTTTTCSEEE
T ss_pred hhhhccccCc
Confidence 6665555444
No 43
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.32 E-value=1.5e-12 Score=119.28 Aligned_cols=55 Identities=20% Similarity=0.326 Sum_probs=27.0
Q ss_pred eeCCCCeeeecChHHHHhh--hhhhhccCCCCCcc-CCcc-ccCCccEEeCcCCcchhh
Q 043683 44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSL-PSNI-HLEKLVLLEMPHSNIQQL 98 (256)
Q Consensus 44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~l-p~~~-~l~~L~~L~L~~n~l~~l 98 (256)
+++++++...+.+..|.++ |++|++++|.++.+ |..| .+++|++|++++|.++.+
T Consensus 37 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 95 (477)
T 2id5_A 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95 (477)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred EECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc
Confidence 3444444444444445444 55555555555544 3334 555555555555555443
No 44
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.32 E-value=3.1e-12 Score=120.30 Aligned_cols=161 Identities=20% Similarity=0.211 Sum_probs=98.7
Q ss_pred EeeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh----HH---HHHHh-c-----
Q 043683 43 CLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL----LD---SVRGI-L----- 106 (256)
Q Consensus 43 ~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l----~~---~L~~L-l----- 106 (256)
.++++++....+.+..|.++ |++|++++|.++.+|..+ .+++|++|++++|.++.+ +. +|+.| +
T Consensus 258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp EEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred EEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence 45666666666777777776 999999999999999998 899999999999998865 22 22222 1
Q ss_pred -ccCCCCchhhc--cCcc-----------ccccccCCCCCCcEEEccCCCCccc-cccccCCCCCCEEeeccCcCCcccC
Q 043683 107 -TRTPNTPLGQH--LNTL-----------VLPENIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLCLRYWERLQSLP 171 (256)
Q Consensus 107 -~~lp~~~l~~~--L~~L-----------~lp~~~~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp 171 (256)
..+|.-.++.+ |+.| ..|..++.+++|++|++++|.++.+ |..++.+++|+.|++++|......|
T Consensus 338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 417 (606)
T 3t6q_A 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417 (606)
T ss_dssp CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence 12332222222 3333 1145566677777777777766644 3456666677777766644322222
Q ss_pred CC----CCCCcEEeccCcccccccccchhchhhhhh
Q 043683 172 KL----PCKLHELDAHHCTALESLSGLFSSFEARTQ 203 (256)
Q Consensus 172 ~~----l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~ 203 (256)
.. +++|++|++++|......|..++.+++++.
T Consensus 418 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 453 (606)
T 3t6q_A 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453 (606)
T ss_dssp CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCE
T ss_pred chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCE
Confidence 21 556666666665544444555555544443
No 45
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.32 E-value=7.2e-13 Score=115.45 Aligned_cols=158 Identities=16% Similarity=0.170 Sum_probs=94.3
Q ss_pred EeeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh--HHHHHHh------------
Q 043683 43 CLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL--LDSVRGI------------ 105 (256)
Q Consensus 43 ~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l--~~~L~~L------------ 105 (256)
.+++++++...+.+..|.++ |++|++++|.+..+++ + .+++|++|++++|.++++ .++|+.|
T Consensus 38 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~ 116 (317)
T 3o53_A 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC 116 (317)
T ss_dssp EEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEE
T ss_pred EEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCc
Confidence 45666666667777778777 8999999998877665 6 888899999988888765 2333332
Q ss_pred ---------------cccCCCCchhhc--cCcc---------cccccc-CCCCCCcEEEccCCCCccccccccCCCCCCE
Q 043683 106 ---------------LTRTPNTPLGQH--LNTL---------VLPENI-GQLSSLGKLDLQKNNFERIPESVIQLSKLGR 158 (256)
Q Consensus 106 ---------------l~~lp~~~l~~~--L~~L---------~lp~~~-~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~ 158 (256)
++.++...++.+ |+.| ..|..+ ..+++|++|++++|.++.+|.. ..+++|++
T Consensus 117 ~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~ 195 (317)
T 3o53_A 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKT 195 (317)
T ss_dssp CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCE
T ss_pred cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCE
Confidence 111111111111 2222 112333 3456666666666666665532 24666777
Q ss_pred EeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhchhhhhhc
Q 043683 159 LCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEARTQY 204 (256)
Q Consensus 159 L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l 204 (256)
|++++ +.+..+|.. +++|++|++++|. +..+|..+..+++++.+
T Consensus 196 L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L 242 (317)
T 3o53_A 196 LDLSS-NKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHF 242 (317)
T ss_dssp EECCS-SCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEE
T ss_pred EECCC-CcCCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEE
Confidence 77766 335555543 5677777777753 55667666666655543
No 46
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=1.6e-12 Score=100.57 Aligned_cols=113 Identities=19% Similarity=0.279 Sum_probs=88.1
Q ss_pred hhhhhccCCCCC--ccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEcc
Q 043683 63 LRYFHWHGCPLK--SLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQ 139 (256)
Q Consensus 63 L~~L~ls~n~l~--~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~ 139 (256)
+++|++++|.++ .+|..+ .+++|++|++++|.++.+ ..++.+++|++|+++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------------~~~~~l~~L~~L~Ls 72 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--------------------------ANLPKLNKLKKLELS 72 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--------------------------TTCCCCTTCCEEECC
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--------------------------hhhhcCCCCCEEECC
Confidence 888999999987 888887 899999999999988641 345788899999999
Q ss_pred CCCCcc-ccccccCCCCCCEEeeccCcCCcccC--CC---CCCCcEEeccCccccccccc----chhchhhhhh
Q 043683 140 KNNFER-IPESVIQLSKLGRLCLRYWERLQSLP--KL---PCKLHELDAHHCTALESLSG----LFSSFEARTQ 203 (256)
Q Consensus 140 ~n~l~~-lp~~i~~l~~L~~L~l~~~~~l~~lp--~~---l~~L~~L~l~~~~~l~~~p~----~~~~l~~l~~ 203 (256)
+|.++. +|..++.+++|++|++++|. +..+| .. +++|++|++++|. +..+|. .+..+++++.
T Consensus 73 ~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~ 144 (149)
T 2je0_A 73 DNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTY 144 (149)
T ss_dssp SSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCE
T ss_pred CCcccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCccc
Confidence 999986 77777889999999999854 66654 32 7889999999875 555554 4555555443
No 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.31 E-value=1e-12 Score=123.64 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=33.4
Q ss_pred hHHHHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh
Q 043683 56 PDTFRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL 98 (256)
Q Consensus 56 ~~~f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l 98 (256)
+..|.++ |++|++++|.+..+|..+ .+++|++|++++|.+.+.
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 414 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV 414 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEEST
T ss_pred hhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCc
Confidence 3445555 888888888888888777 888888888888887654
No 48
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.31 E-value=2.1e-12 Score=115.29 Aligned_cols=78 Identities=23% Similarity=0.290 Sum_probs=54.9
Q ss_pred cccCCCCCCcEEEccCCCCccc-cccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhchhh
Q 043683 125 ENIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEA 200 (256)
Q Consensus 125 ~~~~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~ 200 (256)
..++.+++|++|++++|.++.+ |..++.+++|++|++++ +.+..+|.. +++|++|++++|. +..+|..+..+++
T Consensus 242 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~ 319 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDR 319 (390)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTT
T ss_pred HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCCc-ceecCccccccCc
Confidence 3456677888888888888754 56777888888888887 446666654 6778888888764 6677777766665
Q ss_pred hhhc
Q 043683 201 RTQY 204 (256)
Q Consensus 201 l~~l 204 (256)
++.+
T Consensus 320 L~~L 323 (390)
T 3o6n_A 320 LENL 323 (390)
T ss_dssp CSEE
T ss_pred CCEE
Confidence 5543
No 49
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.31 E-value=2e-12 Score=102.15 Aligned_cols=58 Identities=26% Similarity=0.284 Sum_probs=28.3
Q ss_pred cCCCCCCcEEEccCCCCcccc--ccccCCCCCCEEeeccCcCCcccCC----C---CCCCcEEeccCc
Q 043683 127 IGQLSSLGKLDLQKNNFERIP--ESVIQLSKLGRLCLRYWERLQSLPK----L---PCKLHELDAHHC 185 (256)
Q Consensus 127 ~~~l~~L~~L~l~~n~l~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~----~---l~~L~~L~l~~~ 185 (256)
++.+++|++|++++|.++.+| ..+..+++|+.|++++| .+..+|. . +++|++|++++|
T Consensus 91 ~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence 334455555555555555444 34555555555555543 2344443 1 445555555554
No 50
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.30 E-value=8.1e-12 Score=101.15 Aligned_cols=115 Identities=20% Similarity=0.279 Sum_probs=93.3
Q ss_pred hhhhccCCCCCccCCccccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCcccccc--ccCCCCCCcEEEccCC
Q 043683 64 RYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPE--NIGQLSSLGKLDLQKN 141 (256)
Q Consensus 64 ~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~--~~~~l~~L~~L~l~~n 141 (256)
+++++++|.++.+|..+ ..++++|++++|.++.+ +. .++.+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~-------------------------~~~~~~~~l~~L~~L~Ls~N 64 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRI-------------------------SSDGLFGRLPHLVKLELKRN 64 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSB-------------------------CCSCSGGGCTTCCEEECCSS
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCcc-------------------------CCccccccCCCCCEEECCCC
Confidence 56789999999999887 23899999999998753 33 3788999999999999
Q ss_pred CCccc-cccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccccchhchhhhhhcc
Q 043683 142 NFERI-PESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSGLFSSFEARTQYF 205 (256)
Q Consensus 142 ~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l~ 205 (256)
+++.+ |..++.+++|++|++++| .+..++.. +++|++|++++|......|..+..+++++.+.
T Consensus 65 ~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 65 QLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 99977 678999999999999984 46666653 78999999999876666688888877776543
No 51
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.30 E-value=2.3e-12 Score=101.77 Aligned_cols=114 Identities=20% Similarity=0.295 Sum_probs=94.6
Q ss_pred hhhhhccCCCCC--ccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEcc
Q 043683 63 LRYFHWHGCPLK--SLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQ 139 (256)
Q Consensus 63 L~~L~ls~n~l~--~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~ 139 (256)
+++|++++|.+. .+|..+ .+++|++|++++|.++.+ ..++.+++|++|+++
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--------------------------~~~~~l~~L~~L~Ls 79 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--------------------------SNLPKLPKLKKLELS 79 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--------------------------SSCCCCSSCCEEEEE
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--------------------------hhhccCCCCCEEECc
Confidence 899999999988 899888 999999999999998641 456889999999999
Q ss_pred CCCCcc-ccccccCCCCCCEEeeccCcCCcccCC--C---CCCCcEEeccCccccccccc----chhchhhhhhc
Q 043683 140 KNNFER-IPESVIQLSKLGRLCLRYWERLQSLPK--L---PCKLHELDAHHCTALESLSG----LFSSFEARTQY 204 (256)
Q Consensus 140 ~n~l~~-lp~~i~~l~~L~~L~l~~~~~l~~lp~--~---l~~L~~L~l~~~~~l~~~p~----~~~~l~~l~~l 204 (256)
+|+++. +|..++.+++|++|++++| .+..+|. . +++|++|++++|. +..+|. .+..+++++.+
T Consensus 80 ~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L 152 (168)
T 2ell_A 80 ENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYL 152 (168)
T ss_dssp SCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEE
T ss_pred CCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEe
Confidence 999997 7777788999999999985 5777763 2 7899999999976 566665 56666666544
No 52
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.30 E-value=5e-12 Score=109.81 Aligned_cols=137 Identities=18% Similarity=0.155 Sum_probs=69.0
Q ss_pred hhhhhccCCCCCccC-Ccc-ccCCccEEeCcCCcchhhHHHHHHh----cccCCCCchhhc-cCcc-ccc-cccCCCCCC
Q 043683 63 LRYFHWHGCPLKSLP-SNI-HLEKLVLLEMPHSNIQQLLDSVRGI----LTRTPNTPLGQH-LNTL-VLP-ENIGQLSSL 133 (256)
Q Consensus 63 L~~L~ls~n~l~~lp-~~~-~l~~L~~L~L~~n~l~~l~~~L~~L----l~~lp~~~l~~~-L~~L-~lp-~~~~~l~~L 133 (256)
|++|++++|.++.++ ..+ .+++|++|++++|++.+..+-...+ +..+..+.++++ ++.+ .++ ..+..+++|
T Consensus 151 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L 230 (312)
T 1wwl_A 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL 230 (312)
T ss_dssp CCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCC
T ss_pred CcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCC
Confidence 777888888877776 445 7888888888888764421101010 111111112222 2211 111 122345566
Q ss_pred cEEEccCCCCcccc--ccccCCCCCCEEeeccCcCCcccCCC-CCCCcEEeccCcccccccccchhchhhhh
Q 043683 134 GKLDLQKNNFERIP--ESVIQLSKLGRLCLRYWERLQSLPKL-PCKLHELDAHHCTALESLSGLFSSFEART 202 (256)
Q Consensus 134 ~~L~l~~n~l~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~~-l~~L~~L~l~~~~~l~~~p~~~~~l~~l~ 202 (256)
++|++++|+++..+ +.+..+++|++|++++| .++.+|.. .++|++|++++|. +..+|. +..+++++
T Consensus 231 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~~L~~L~Ls~N~-l~~~p~-~~~l~~L~ 299 (312)
T 1wwl_A 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLPAKLSVLDLSYNR-LDRNPS-PDELPQVG 299 (312)
T ss_dssp SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCCSEEEEEECCSSC-CCSCCC-TTTSCEEE
T ss_pred CEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhhccCCceEEECCCCC-CCCChh-HhhCCCCC
Confidence 66666666665433 23445566666666653 34455554 3456666666543 444444 44444433
No 53
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.29 E-value=9.7e-13 Score=121.55 Aligned_cols=157 Identities=16% Similarity=0.155 Sum_probs=87.1
Q ss_pred EeeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh--HHHHHHh------cccC--
Q 043683 43 CLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL--LDSVRGI------LTRT-- 109 (256)
Q Consensus 43 ~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l--~~~L~~L------l~~l-- 109 (256)
.++++++....+.+..|.++ |++|++++|.++.+++ + .+++|++|++++|.++.+ .++|+.| +..+
T Consensus 38 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~ 116 (487)
T 3oja_A 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC 116 (487)
T ss_dssp EEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEE
T ss_pred EEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCc
Confidence 45666666666777777777 9999999999877665 7 888999999999888765 2333333 1110
Q ss_pred ---CC---Cc-------------hhhc--cCcc---------ccccccC-CCCCCcEEEccCCCCccccccccCCCCCCE
Q 043683 110 ---PN---TP-------------LGQH--LNTL---------VLPENIG-QLSSLGKLDLQKNNFERIPESVIQLSKLGR 158 (256)
Q Consensus 110 ---p~---~~-------------l~~~--L~~L---------~lp~~~~-~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~ 158 (256)
+. +. ++.+ |+.| ..|..+. .+++|++|++++|.++.+|. ...+++|+.
T Consensus 117 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~ 195 (487)
T 3oja_A 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKT 195 (487)
T ss_dssp CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCE
T ss_pred cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCE
Confidence 00 00 1111 1111 1233333 45555555555555554442 223555556
Q ss_pred EeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhchhhhhh
Q 043683 159 LCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEARTQ 203 (256)
Q Consensus 159 L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~ 203 (256)
|++++| .+..+|.. +++|+.|++++|. +..+|..+..++.+..
T Consensus 196 L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~ 241 (487)
T 3oja_A 196 LDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEH 241 (487)
T ss_dssp EECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCE
T ss_pred EECCCC-CCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCE
Confidence 666553 34444443 5566666666643 4456666555555443
No 54
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.29 E-value=9.9e-12 Score=100.89 Aligned_cols=113 Identities=21% Similarity=0.338 Sum_probs=94.1
Q ss_pred hhhhccCCCCCccCCccccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCCC
Q 043683 64 RYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNNF 143 (256)
Q Consensus 64 ~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~l 143 (256)
+++++++|.++.+|..+ .++|++|++++|.++.+ |..+..+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~i-------------------------p~~~~~l~~L~~L~Ls~N~i 66 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLV-------------------------PKELSNYKHLTLIDLSNNRI 66 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSC-------------------------CGGGGGCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchh-------------------------HHHhhcccCCCEEECCCCcC
Confidence 46788999999999876 46899999999998753 77889999999999999999
Q ss_pred cccc-ccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccccccccc-chhchhhhhhc
Q 043683 144 ERIP-ESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSG-LFSSFEARTQY 204 (256)
Q Consensus 144 ~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~-~~~~l~~l~~l 204 (256)
+.++ ..+.++++|++|++++ +.+..+|.. +++|++|++++|. +..+|. .+..+.++..+
T Consensus 67 ~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 131 (193)
T 2wfh_A 67 STLSNQSFSNMTQLLTLILSY-NRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHL 131 (193)
T ss_dssp CCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEE
T ss_pred CEeCHhHccCCCCCCEEECCC-CccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEE
Confidence 9887 4699999999999998 557777753 7899999999976 666666 47677666654
No 55
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.29 E-value=4.4e-12 Score=123.14 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=53.0
Q ss_pred cccccCCCCCCcEEEccCCCCc-cccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhch
Q 043683 123 LPENIGQLSSLGKLDLQKNNFE-RIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSF 198 (256)
Q Consensus 123 lp~~~~~l~~L~~L~l~~n~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l 198 (256)
+|..++.+++|++|++++|+++ .+|.+++.+++|++|++++|...+.+|.. +++|++|++++|...+.+|..+...
T Consensus 482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~ 561 (768)
T 3rgz_A 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence 4666677777777777777776 66667777777777777776555566654 6677777777776666677766554
Q ss_pred hhh
Q 043683 199 EAR 201 (256)
Q Consensus 199 ~~l 201 (256)
..+
T Consensus 562 ~~~ 564 (768)
T 3rgz_A 562 SGK 564 (768)
T ss_dssp TTC
T ss_pred cch
Confidence 433
No 56
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.29 E-value=1.1e-11 Score=117.89 Aligned_cols=74 Identities=20% Similarity=0.279 Sum_probs=60.4
Q ss_pred ccccccC--CCCCCcEEEccCCCCccccccccCCCCCCEEeec------cCcCCcccCCC---CCCCcEEeccCcccccc
Q 043683 122 VLPENIG--QLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLR------YWERLQSLPKL---PCKLHELDAHHCTALES 190 (256)
Q Consensus 122 ~lp~~~~--~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~------~~~~l~~lp~~---l~~L~~L~l~~~~~l~~ 190 (256)
.+|..+. .+++|++|++++|+++.+|..++.+++|+.|+++ +|...+.+|.. +++|++|++++|. ++.
T Consensus 502 ~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ 580 (636)
T 4eco_A 502 KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRK 580 (636)
T ss_dssp BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCB
T ss_pred ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCc
Confidence 3477776 8899999999999999899899999999999994 45556777865 7889999999876 488
Q ss_pred cccchh
Q 043683 191 LSGLFS 196 (256)
Q Consensus 191 ~p~~~~ 196 (256)
+|..+.
T Consensus 581 ip~~~~ 586 (636)
T 4eco_A 581 VNEKIT 586 (636)
T ss_dssp CCSCCC
T ss_pred cCHhHh
Confidence 888755
No 57
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.29 E-value=1.1e-12 Score=123.78 Aligned_cols=78 Identities=23% Similarity=0.271 Sum_probs=55.2
Q ss_pred cccCCCCCCcEEEccCCCCccc-cccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhchhh
Q 043683 125 ENIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEA 200 (256)
Q Consensus 125 ~~~~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~ 200 (256)
..++.+++|++|++++|.++.+ |..++.+++|+.|++++| .+..+|.. +++|++|++++|. +..+|..+..+++
T Consensus 248 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~ 325 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDR 325 (597)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTT
T ss_pred hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCC
Confidence 4566778888888888888744 567788888888888874 45666654 6778888888764 5577777766665
Q ss_pred hhhc
Q 043683 201 RTQY 204 (256)
Q Consensus 201 l~~l 204 (256)
+..|
T Consensus 326 L~~L 329 (597)
T 3oja_B 326 LENL 329 (597)
T ss_dssp CSEE
T ss_pred CCEE
Confidence 5543
No 58
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=1.3e-11 Score=98.51 Aligned_cols=103 Identities=21% Similarity=0.277 Sum_probs=84.6
Q ss_pred hhhhccCCCCCccCCccccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCCC
Q 043683 64 RYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNNF 143 (256)
Q Consensus 64 ~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~l 143 (256)
+.+++++|.++.+|..+. ++|++|++++|+++++ .|..|+.+++|++|++++|++
T Consensus 15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~------------------------~~~~~~~l~~L~~L~Ls~N~l 69 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKL------------------------EPGVFDHLVNLQQLYFNSNKL 69 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCC------------------------CTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCcccc------------------------CHHHhcCCcCCCEEECCCCCC
Confidence 467889999999998773 8999999999998763 256778999999999999999
Q ss_pred cccccc-ccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccccccccc
Q 043683 144 ERIPES-VIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSG 193 (256)
Q Consensus 144 ~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~ 193 (256)
+.+|.. +..+++|++|++++ +.++.+|.. +++|++|++++|+ +...+.
T Consensus 70 ~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~ 122 (174)
T 2r9u_A 70 TAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYNNP-WDCECR 122 (174)
T ss_dssp CCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSC-BCTTBG
T ss_pred CccChhHhCCcchhhEEECCC-CccceeCHHHhccccCCCEEEeCCCC-cccccc
Confidence 999865 58999999999998 557788764 7899999999875 444443
No 59
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.28 E-value=2.7e-12 Score=111.53 Aligned_cols=132 Identities=20% Similarity=0.294 Sum_probs=91.7
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~ 140 (256)
|++|++++|.+..+++ + .+++|++|++++|.++.+. .+.. +..+..+.++++ ++. ++ .++.+++|++|++++
T Consensus 65 L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~-l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 65 LIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAG-LQSIKTLDLTSTQITD--VT-PLAGLSNLQVLYLDL 138 (308)
T ss_dssp CCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTT-CTTCCEEECTTSCCCC--CG-GGTTCTTCCEEECCS
T ss_pred CCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcC-CCCCCEEECCCCCCCC--ch-hhcCCCCCCEEECCC
Confidence 8888999888888887 7 8889999999998877641 1111 111122222222 222 23 378889999999999
Q ss_pred CCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccchhchhhhhhc
Q 043683 141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFEARTQY 204 (256)
Q Consensus 141 n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l 204 (256)
|.++.++. ++.+++|+.|++++| .+..++.. +++|++|++++|. +..++. +..+++++.+
T Consensus 139 n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L 200 (308)
T 1h6u_A 139 NQITNISP-LAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDNK-ISDISP-LASLPNLIEV 200 (308)
T ss_dssp SCCCCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEE
T ss_pred CccCcCcc-ccCCCCccEEEccCC-cCCCChhhcCCCCCCEEECCCCc-cCcChh-hcCCCCCCEE
Confidence 99988875 888999999999985 46666654 7889999999875 555654 5555555543
No 60
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.28 E-value=5.1e-12 Score=100.74 Aligned_cols=114 Identities=17% Similarity=0.140 Sum_probs=85.2
Q ss_pred hhhhhccCCCCCccCCcccc-CCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683 63 LRYFHWHGCPLKSLPSNIHL-EKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN 141 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~~l-~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n 141 (256)
|++|++++|.++.+|....+ ++|++|++++|.++.+ ..++.+++|++|++++|
T Consensus 21 L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--------------------------~~l~~l~~L~~L~Ls~N 74 (176)
T 1a9n_A 21 DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--------------------------DGFPLLRRLKTLLVNNN 74 (176)
T ss_dssp CEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--------------------------CCCCCCSSCCEEECCSS
T ss_pred ceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--------------------------cccccCCCCCEEECCCC
Confidence 78888888888888653344 4899999999888642 34577888999999999
Q ss_pred CCccccccc-cCCCCCCEEeeccCcCCcccCC--C---CCCCcEEeccCcccccccccc----hhchhhhhhc
Q 043683 142 NFERIPESV-IQLSKLGRLCLRYWERLQSLPK--L---PCKLHELDAHHCTALESLSGL----FSSFEARTQY 204 (256)
Q Consensus 142 ~l~~lp~~i-~~l~~L~~L~l~~~~~l~~lp~--~---l~~L~~L~l~~~~~l~~~p~~----~~~l~~l~~l 204 (256)
+++.+|+.+ +.+++|++|++++| .++.+|. . +++|++|++++|+ +..+|.. +..++.++.+
T Consensus 75 ~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~L 145 (176)
T 1a9n_A 75 RICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVL 145 (176)
T ss_dssp CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEE
T ss_pred cccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCcccee
Confidence 988888655 88889999999874 4677776 2 7788999998875 5566664 5555555544
No 61
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.28 E-value=1.5e-12 Score=112.97 Aligned_cols=136 Identities=18% Similarity=0.191 Sum_probs=84.3
Q ss_pred hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhh--HH-HH--HHhcccCCCCchhhc-cCcc-ccccc-cCCCCC
Q 043683 63 LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQL--LD-SV--RGILTRTPNTPLGQH-LNTL-VLPEN-IGQLSS 132 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l--~~-~L--~~Ll~~lp~~~l~~~-L~~L-~lp~~-~~~l~~ 132 (256)
|++|++++|.+..+|+. + .+++|++|++++|++.+. .. .. .. +..+..+.++++ ++.+ .++.. ++.+++
T Consensus 147 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~-l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~ 225 (310)
T 4glp_A 147 LKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK-FPAIQNLALRNTGMETPTGVCAALAAAGVQ 225 (310)
T ss_dssp CCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS-SCCCCSCBCCSSCCCCHHHHHHHHHHHTCC
T ss_pred CCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc-CCCCCEEECCCCCCCchHHHHHHHHhcCCC
Confidence 88899999998877754 5 889999999999987542 00 00 00 122222333333 2222 11122 356778
Q ss_pred CcEEEccCCCCccc-cccccCC---CCCCEEeeccCcCCcccCCC-CCCCcEEeccCcccccccccchhchhhhh
Q 043683 133 LGKLDLQKNNFERI-PESVIQL---SKLGRLCLRYWERLQSLPKL-PCKLHELDAHHCTALESLSGLFSSFEART 202 (256)
Q Consensus 133 L~~L~l~~n~l~~l-p~~i~~l---~~L~~L~l~~~~~l~~lp~~-l~~L~~L~l~~~~~l~~~p~~~~~l~~l~ 202 (256)
|++|++++|+++.+ |+.++.+ ++|++|++++ +.++.+|.. .++|++|++++|. +..+|. +..++.++
T Consensus 226 L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~~~~L~~L~Ls~N~-l~~~~~-~~~l~~L~ 297 (310)
T 4glp_A 226 PHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPKGLPAKLRVLDLSSNR-LNRAPQ-PDELPEVD 297 (310)
T ss_dssp CSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCSCCCSCCSCEECCSCC-CCSCCC-TTSCCCCS
T ss_pred CCEEECCCCCCCccchhhHHhccCcCcCCEEECCC-CCCCchhhhhcCCCCEEECCCCc-CCCCch-hhhCCCcc
Confidence 88888888888755 6666665 5888888887 446677776 6688888888764 455544 34444443
No 62
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.28 E-value=1.5e-12 Score=108.72 Aligned_cols=54 Identities=15% Similarity=0.224 Sum_probs=38.2
Q ss_pred eCCCCeeeecChHHHHhh--hhhhhccCCC-CCccCCc-c-ccCCccEEeCcC-Ccchhh
Q 043683 45 GMSKVKEIHLNPDTFRKM--LRYFHWHGCP-LKSLPSN-I-HLEKLVLLEMPH-SNIQQL 98 (256)
Q Consensus 45 ~l~~l~~~~l~~~~f~~l--L~~L~ls~n~-l~~lp~~-~-~l~~L~~L~L~~-n~l~~l 98 (256)
++++++...+.+..|.++ |++|++++|. ++.+|+. | .+++|++|++++ |.++.+
T Consensus 37 ~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 37 KLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp EEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred EEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 334444445555566666 8888888886 8888764 5 788888888887 877654
No 63
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.28 E-value=6.4e-12 Score=117.02 Aligned_cols=132 Identities=23% Similarity=0.258 Sum_probs=78.2
Q ss_pred eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccC
Q 043683 44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLN 119 (256)
Q Consensus 44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~ 119 (256)
++++.+....+.+..|.++ |++|++++|.++.+++. | .+++|++|++++|.++.+
T Consensus 33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~--------------------- 91 (570)
T 2z63_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL--------------------- 91 (570)
T ss_dssp EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE---------------------
T ss_pred EEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc---------------------
Confidence 5566666556666677776 88899998888888655 5 788999999998887653
Q ss_pred ccccccccCCCCCCcEEEccCCCCccccc-cccCCCCCCEEeeccCcCCcc--cCCC---CCCCcEEeccCccccccccc
Q 043683 120 TLVLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLCLRYWERLQS--LPKL---PCKLHELDAHHCTALESLSG 193 (256)
Q Consensus 120 ~L~lp~~~~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~--lp~~---l~~L~~L~l~~~~~l~~~p~ 193 (256)
.|..|+++++|++|++++|+++.+|. .++++++|++|++++|. +.. +|.. +++|++|++++|......|.
T Consensus 92 ---~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 92 ---ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (570)
T ss_dssp ---CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred ---CHhhhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHH
Confidence 12344555555555555555555543 45555555555555532 222 3432 45555555555443322333
Q ss_pred chhchhh
Q 043683 194 LFSSFEA 200 (256)
Q Consensus 194 ~~~~l~~ 200 (256)
.++.++.
T Consensus 168 ~~~~l~~ 174 (570)
T 2z63_A 168 DLRVLHQ 174 (570)
T ss_dssp GGHHHHT
T ss_pred Hccchhc
Confidence 4443333
No 64
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.28 E-value=1.2e-12 Score=124.52 Aligned_cols=132 Identities=23% Similarity=0.355 Sum_probs=75.5
Q ss_pred hhhhhccCCC-CCccCCcc-ccCCccEEeCcCCc-chh--hHHHHHH---------h---------cccCCCC-chhhc-
Q 043683 63 LRYFHWHGCP-LKSLPSNI-HLEKLVLLEMPHSN-IQQ--LLDSVRG---------I---------LTRTPNT-PLGQH- 117 (256)
Q Consensus 63 L~~L~ls~n~-l~~lp~~~-~l~~L~~L~L~~n~-l~~--l~~~L~~---------L---------l~~lp~~-~l~~~- 117 (256)
|++|++++|. .+.+|..+ .+++|++|++++|+ +++ ++..+.. | ++.+|.. .++.+
T Consensus 251 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~ 330 (636)
T 4eco_A 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK 330 (636)
T ss_dssp CCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCT
T ss_pred CCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCC
Confidence 9999999998 66789888 99999999999998 875 4333332 1 2223320 12221
Q ss_pred -cCcc---------ccccccCCCCCCcEEEccCCCCccccccccCCCC-CCEEeeccCcCCcccCCC-----CCCCcEEe
Q 043683 118 -LNTL---------VLPENIGQLSSLGKLDLQKNNFERIPESVIQLSK-LGRLCLRYWERLQSLPKL-----PCKLHELD 181 (256)
Q Consensus 118 -L~~L---------~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~-L~~L~l~~~~~l~~lp~~-----l~~L~~L~ 181 (256)
|+.| .+| .++.+++|++|++++|+++.+|+.++.+++ |++|++++|. +..+|.. +++|++|+
T Consensus 331 ~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~ 408 (636)
T 4eco_A 331 KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAID 408 (636)
T ss_dssp TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEE
T ss_pred CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEE
Confidence 2222 334 444445555555555555555555555555 5555555533 4455543 22455666
Q ss_pred ccCcccccccccchh
Q 043683 182 AHHCTALESLSGLFS 196 (256)
Q Consensus 182 l~~~~~l~~~p~~~~ 196 (256)
+++|...+..|..+.
T Consensus 409 Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 409 FSYNEIGSVDGKNFD 423 (636)
T ss_dssp CCSSCTTTTTTCSSC
T ss_pred CcCCcCCCcchhhhc
Confidence 665554444555444
No 65
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.28 E-value=5.6e-12 Score=118.57 Aligned_cols=135 Identities=19% Similarity=0.201 Sum_probs=91.7
Q ss_pred EeeCCCCeeeecChHHHHhh--hhhhhccCCCCCcc-CCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhcc
Q 043683 43 CLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSL-PSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHL 118 (256)
Q Consensus 43 ~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~l-p~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L 118 (256)
.++++++....+.+..|.++ |++|++++|.+..+ |..| .+++|++|++++|.++.+
T Consensus 37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------------------- 96 (606)
T 3t6q_A 37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM-------------------- 96 (606)
T ss_dssp EEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE--------------------
T ss_pred EEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccccc--------------------
Confidence 45566666566666667766 88888888887766 4456 788888888888877653
Q ss_pred CccccccccCCCCCCcEEEccCCCCccc-cccccCCCCCCEEeeccCcCCccc--CCC--CCCCcEEeccCccccccccc
Q 043683 119 NTLVLPENIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLCLRYWERLQSL--PKL--PCKLHELDAHHCTALESLSG 193 (256)
Q Consensus 119 ~~L~lp~~~~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~l--p~~--l~~L~~L~l~~~~~l~~~p~ 193 (256)
.|..++.+++|++|++++|+++.+ |..++++++|++|++++|. +..+ |.. +++|++|++++|......|.
T Consensus 97 ----~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 97 ----AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp ----CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred ----ChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChh
Confidence 255667777777777777777766 4567777777777777744 4444 433 66777777777654444455
Q ss_pred chhchhhhh
Q 043683 194 LFSSFEART 202 (256)
Q Consensus 194 ~~~~l~~l~ 202 (256)
.++.+++++
T Consensus 172 ~~~~l~~L~ 180 (606)
T 3t6q_A 172 DMSSLQQAT 180 (606)
T ss_dssp HHHTTTTCC
T ss_pred hhhhhcccc
Confidence 566655554
No 66
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.28 E-value=3.3e-12 Score=116.89 Aligned_cols=142 Identities=24% Similarity=0.391 Sum_probs=80.5
Q ss_pred eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhh----HHH---HHHh------c
Q 043683 44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQL----LDS---VRGI------L 106 (256)
Q Consensus 44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l----~~~---L~~L------l 106 (256)
++++++....+.+..|.++ |++|++++|.++.+|.. | .+++|++|++++|.++.+ +.+ |+.| +
T Consensus 61 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l 140 (477)
T 2id5_A 61 LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTC
T ss_pred EECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcc
Confidence 3444444445555667666 99999999999999876 5 899999999999988765 222 2222 1
Q ss_pred ccCCCCchhhc--cCcc--------ccc-cccCCCCCCcEEEccCCCCcccc-ccccCCCCCCEEeeccCcCCcccCCC-
Q 043683 107 TRTPNTPLGQH--LNTL--------VLP-ENIGQLSSLGKLDLQKNNFERIP-ESVIQLSKLGRLCLRYWERLQSLPKL- 173 (256)
Q Consensus 107 ~~lp~~~l~~~--L~~L--------~lp-~~~~~l~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~- 173 (256)
..++.-.++++ |+.| .+| ..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|+.+..+|..
T Consensus 141 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 220 (477)
T 2id5_A 141 VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220 (477)
T ss_dssp CEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT
T ss_pred ceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc
Confidence 11111112222 3333 122 23555666666666666665544 24556666666666655544444432
Q ss_pred --CCCCcEEeccCc
Q 043683 174 --PCKLHELDAHHC 185 (256)
Q Consensus 174 --l~~L~~L~l~~~ 185 (256)
..+|++|++++|
T Consensus 221 ~~~~~L~~L~l~~n 234 (477)
T 2id5_A 221 LYGLNLTSLSITHC 234 (477)
T ss_dssp TTTCCCSEEEEESS
T ss_pred ccCccccEEECcCC
Confidence 224444444443
No 67
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=5.1e-12 Score=112.14 Aligned_cols=132 Identities=19% Similarity=0.208 Sum_probs=97.8
Q ss_pred EeeCCCCeeeecChHHHH-hh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc
Q 043683 43 CLGMSKVKEIHLNPDTFR-KM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH 117 (256)
Q Consensus 43 ~l~l~~l~~~~l~~~~f~-~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~ 117 (256)
.+++++++...+....|. ++ |++|++++|.++.+++. | .+++|++|+|++|+++.+
T Consensus 43 ~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~------------------- 103 (361)
T 2xot_A 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL------------------- 103 (361)
T ss_dssp EEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-------------------
T ss_pred EEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-------------------
Confidence 355666665556666565 44 88888888888888765 5 788888888888887653
Q ss_pred cCccccccccCCCCCCcEEEccCCCCccc-cccccCCCCCCEEeeccCcCCcccCCC-------CCCCcEEeccCccccc
Q 043683 118 LNTLVLPENIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLCLRYWERLQSLPKL-------PCKLHELDAHHCTALE 189 (256)
Q Consensus 118 L~~L~lp~~~~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~-------l~~L~~L~l~~~~~l~ 189 (256)
.+..|..+++|++|++++|+++.+ |..+..+++|+.|++++ +.+..+|.. +++|++|++++|. +.
T Consensus 104 -----~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~ 176 (361)
T 2xot_A 104 -----DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNK-LK 176 (361)
T ss_dssp -----CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSC-CC
T ss_pred -----CHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCC-CC
Confidence 134578889999999999999977 46788999999999998 557777753 6789999999865 56
Q ss_pred cccc-chhchhh
Q 043683 190 SLSG-LFSSFEA 200 (256)
Q Consensus 190 ~~p~-~~~~l~~ 200 (256)
.+|. .+..+..
T Consensus 177 ~l~~~~~~~l~~ 188 (361)
T 2xot_A 177 KLPLTDLQKLPA 188 (361)
T ss_dssp CCCHHHHHHSCH
T ss_pred ccCHHHhhhccH
Confidence 6653 4544443
No 68
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.27 E-value=3e-12 Score=102.06 Aligned_cols=97 Identities=18% Similarity=0.264 Sum_probs=84.7
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccc-cCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPEN-IGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~-~~~l~~L~~L~l~~ 140 (256)
|++|++++|.++.+ +.+ .+++|++|++++|.++.+ |.. ++.+++|++|++++
T Consensus 44 L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~-------------------------~~~~~~~l~~L~~L~L~~ 97 (176)
T 1a9n_A 44 FDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRI-------------------------GEGLDQALPDLTELILTN 97 (176)
T ss_dssp CSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEE-------------------------CSCHHHHCTTCCEEECCS
T ss_pred CCEEECCCCCCCcc-cccccCCCCCEEECCCCccccc-------------------------CcchhhcCCCCCEEECCC
Confidence 99999999999998 567 999999999999998754 433 37889999999999
Q ss_pred CCCccccc--cccCCCCCCEEeeccCcCCcccCC-----C--CCCCcEEeccCcc
Q 043683 141 NNFERIPE--SVIQLSKLGRLCLRYWERLQSLPK-----L--PCKLHELDAHHCT 186 (256)
Q Consensus 141 n~l~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~-----~--l~~L~~L~l~~~~ 186 (256)
|.++.+|. .++.+++|+.|++++|. +..+|. . +++|++|+++.|.
T Consensus 98 N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 98 NSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999997 89999999999999854 677886 2 8899999998865
No 69
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.26 E-value=6.3e-12 Score=102.03 Aligned_cols=145 Identities=12% Similarity=0.151 Sum_probs=88.5
Q ss_pred eecChHHHHhhhhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCC
Q 043683 52 IHLNPDTFRKMLRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQL 130 (256)
Q Consensus 52 ~~l~~~~f~~lL~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l 130 (256)
..+....|...++.. +..+....+ .. .+++|++|++++|.++.+. .+.. +..+..+.++++ .+..+..+..+
T Consensus 15 ~~~pd~~~~~~~~~~-~~~~~~~~i--~~~~l~~L~~L~l~~n~i~~l~-~l~~-l~~L~~L~l~~n--~~~~~~~l~~l 87 (197)
T 4ezg_A 15 VNIPDSTFKAYLNGL-LGQSSTANI--TEAQMNSLTYITLANINVTDLT-GIEY-AHNIKDLTINNI--HATNYNPISGL 87 (197)
T ss_dssp CCCCCHHHHHHHHHH-HTCCTTCCC--BHHHHHTCCEEEEESSCCSCCT-TGGG-CTTCSEEEEESC--CCSCCGGGTTC
T ss_pred eecCcHHHHHHHHHH-hCCCccccC--ChhhcCCccEEeccCCCccChH-HHhc-CCCCCEEEccCC--CCCcchhhhcC
Confidence 445556666553322 233333333 33 7899999999999987542 2222 122222222222 11223467788
Q ss_pred CCCcEEEccCCCCcc-ccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhchhhhhhc
Q 043683 131 SSLGKLDLQKNNFER-IPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEARTQY 204 (256)
Q Consensus 131 ~~L~~L~l~~n~l~~-lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l 204 (256)
++|++|++++|+++. .|..++.+++|++|++++|......|.. +++|++|++++|..+..+| .+..+++++.+
T Consensus 88 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L 164 (197)
T 4ezg_A 88 SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSL 164 (197)
T ss_dssp TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEE
T ss_pred CCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEE
Confidence 888888888888874 6677888888888888885533333332 7788888888876566666 45555555544
No 70
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.26 E-value=2.7e-12 Score=126.13 Aligned_cols=129 Identities=22% Similarity=0.347 Sum_probs=73.1
Q ss_pred hhhhhccCCC-CCccCCcc-ccCCccEEeCcCCc-chh--hHHHHHHh------cccCCCCchhhc-cCcccccc--ccC
Q 043683 63 LRYFHWHGCP-LKSLPSNI-HLEKLVLLEMPHSN-IQQ--LLDSVRGI------LTRTPNTPLGQH-LNTLVLPE--NIG 128 (256)
Q Consensus 63 L~~L~ls~n~-l~~lp~~~-~l~~L~~L~L~~n~-l~~--l~~~L~~L------l~~lp~~~l~~~-L~~L~lp~--~~~ 128 (256)
|++|++++|. .+.+|..+ .+++|++|++++|+ +++ ++..+..+ +..+..+.++++ ++ .+|. .++
T Consensus 493 L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l~ 570 (876)
T 4ecn_A 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASASLQ 570 (876)
T ss_dssp CCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHHHHT
T ss_pred CCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCChhhhh
Confidence 9999999998 67889888 99999999999998 875 43333321 112222222222 22 3344 555
Q ss_pred CCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC---CCC-CcEEeccCcccccccccchh
Q 043683 129 QLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL---PCK-LHELDAHHCTALESLSGLFS 196 (256)
Q Consensus 129 ~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~-L~~L~l~~~~~l~~~p~~~~ 196 (256)
.+++|++|++++|+++.+| .++.+++|+.|++++|. +..+|.. +++ |++|++++|. +..+|..+.
T Consensus 571 ~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~ 639 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFN 639 (876)
T ss_dssp TCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCC
T ss_pred cCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCC-CCcCchhhh
Confidence 5555555555555555555 55555555555555533 3355543 344 5555555543 334444433
No 71
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.26 E-value=2.2e-11 Score=113.03 Aligned_cols=149 Identities=11% Similarity=0.184 Sum_probs=84.0
Q ss_pred ecChHHHHhh--hhhhhccCCCCCc-cC---Ccc-ccCCccEEeCcCCcchhhHH---HHHHhcccCCCCchhhc-cCcc
Q 043683 53 HLNPDTFRKM--LRYFHWHGCPLKS-LP---SNI-HLEKLVLLEMPHSNIQQLLD---SVRGILTRTPNTPLGQH-LNTL 121 (256)
Q Consensus 53 ~l~~~~f~~l--L~~L~ls~n~l~~-lp---~~~-~l~~L~~L~L~~n~l~~l~~---~L~~Ll~~lp~~~l~~~-L~~L 121 (256)
.+....|.++ |++|++++|.+.. +| ..+ .+++|++|++++|.++.+.. .+.. +..+..+.++++ ++
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~-l~~L~~L~Ls~N~l~-- 400 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT-LKNLTSLDISRNTFH-- 400 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGG-CTTCCEEECTTCCCC--
T ss_pred cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhc-CCCCCEEECCCCCCc--
Confidence 3444444444 6777777777554 22 224 56777777777777654421 1111 122222222222 22
Q ss_pred ccccccCCCCCCcEEEccCCCCccccccc------------------cCCCCCCEEeeccCcCCcccCCC--CCCCcEEe
Q 043683 122 VLPENIGQLSSLGKLDLQKNNFERIPESV------------------IQLSKLGRLCLRYWERLQSLPKL--PCKLHELD 181 (256)
Q Consensus 122 ~lp~~~~~l~~L~~L~l~~n~l~~lp~~i------------------~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~ 181 (256)
.+|..++.+++|++|++++|+++.+|..+ +.+++|++|++++| .++.+|.. +++|++|+
T Consensus 401 ~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~ 479 (549)
T 2z81_A 401 PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDASLFPVLLVMK 479 (549)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEE
T ss_pred cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCcccCccCCEEe
Confidence 34555666666666666666665554332 25677888888874 46677765 77888888
Q ss_pred ccCcccccccccchhchhhhhhcc
Q 043683 182 AHHCTALESLSGLFSSFEARTQYF 205 (256)
Q Consensus 182 l~~~~~l~~~p~~~~~l~~l~~l~ 205 (256)
+++|......|..++.+++++.+.
T Consensus 480 Ls~N~l~~~~~~~~~~l~~L~~L~ 503 (549)
T 2z81_A 480 ISRNQLKSVPDGIFDRLTSLQKIW 503 (549)
T ss_dssp CCSSCCCCCCTTGGGGCTTCCEEE
T ss_pred cCCCccCCcCHHHHhcCcccCEEE
Confidence 888764444455577776666443
No 72
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.26 E-value=1.9e-11 Score=97.11 Aligned_cols=98 Identities=24% Similarity=0.339 Sum_probs=83.6
Q ss_pred hhhhhccCCCCCccCCccccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCC
Q 043683 63 LRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNN 142 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~ 142 (256)
.+.+++++|.++.+|..+ .++|++|++++|.++++ .|..|+.+++|++|++++|+
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~------------------------~~~~~~~l~~L~~L~Ls~N~ 65 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKL------------------------EPGVFDRLTQLTRLDLDNNQ 65 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCC------------------------CTTTTTTCTTCSEEECCSSC
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCcc------------------------ChhhhcCcccCCEEECCCCC
Confidence 467889999999999877 48899999999998763 25668899999999999999
Q ss_pred Ccccccc-ccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcc
Q 043683 143 FERIPES-VIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCT 186 (256)
Q Consensus 143 l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~ 186 (256)
++.+|+. +..+++|++|++++ +.++.+|.. +++|++|++++|+
T Consensus 66 l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 66 LTVLPAGVFDKLTQLTQLSLND-NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCccChhhccCCCCCCEEECCC-CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 9998864 68999999999998 557778763 7899999999876
No 73
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.26 E-value=2e-11 Score=106.56 Aligned_cols=128 Identities=18% Similarity=0.310 Sum_probs=89.2
Q ss_pred hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhh------HHHHHHh---------cccCCCCchhhccCcc----
Q 043683 63 LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQL------LDSVRGI---------LTRTPNTPLGQHLNTL---- 121 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l------~~~L~~L---------l~~lp~~~l~~~L~~L---- 121 (256)
|++|++++|.++.++.. + .+++|++|++++|.++.. +.++..| ++.+|.. +...|+.|
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~L~~L~l~~ 201 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-LPPSLTELHLDG 201 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-CCTTCSEEECTT
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc-ccccCCEEECCC
Confidence 77777777777776654 4 677777777777766431 2222222 3333332 11224444
Q ss_pred -----ccccccCCCCCCcEEEccCCCCccccc-cccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccc
Q 043683 122 -----VLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLS 192 (256)
Q Consensus 122 -----~lp~~~~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p 192 (256)
..|..++.+++|++|++++|.++.++. .+..+++|++|++++| .+..+|.. +++|++|++++|. +..+|
T Consensus 202 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~ 279 (330)
T 1xku_A 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIG 279 (330)
T ss_dssp SCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccC
Confidence 236778999999999999999997764 7899999999999985 57788875 7899999999876 55555
Q ss_pred c
Q 043683 193 G 193 (256)
Q Consensus 193 ~ 193 (256)
.
T Consensus 280 ~ 280 (330)
T 1xku_A 280 S 280 (330)
T ss_dssp T
T ss_pred h
Confidence 4
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.25 E-value=4.5e-12 Score=110.35 Aligned_cols=152 Identities=13% Similarity=0.168 Sum_probs=105.9
Q ss_pred CCeeeecChHHHHhh-------hhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhh-HHHHH-HhcccCCCCchhh
Q 043683 48 KVKEIHLNPDTFRKM-------LRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQL-LDSVR-GILTRTPNTPLGQ 116 (256)
Q Consensus 48 ~l~~~~l~~~~f~~l-------L~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l-~~~L~-~Ll~~lp~~~l~~ 116 (256)
+++.+.+..+.+.+. |++|++++|.++.+++ .+ .+++|++|++++|.++.+ +..+. . +..+..+.+++
T Consensus 100 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-l~~L~~L~L~~ 178 (317)
T 3o53_A 100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS-SDTLEHLNLQY 178 (317)
T ss_dssp TCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGG-TTTCCEEECTT
T ss_pred CcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhc-cCcCCEEECCC
Confidence 344455544444333 8889999999888765 45 789999999999988764 11111 1 11122222222
Q ss_pred c-cCccccccccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccc-ccc
Q 043683 117 H-LNTLVLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTAL-ESL 191 (256)
Q Consensus 117 ~-L~~L~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l-~~~ 191 (256)
+ ++.+ | ....+++|++|++++|+++.+|+.+..+++|+.|++++| .+..+|.. +++|++|++++|+.. ..+
T Consensus 179 N~l~~~--~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 179 NFIYDV--K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp SCCCEE--E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHH
T ss_pred CcCccc--c-cccccccCCEEECCCCcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCH
Confidence 2 2222 2 224589999999999999999988999999999999985 57788876 789999999998765 467
Q ss_pred ccchhchhhhhhc
Q 043683 192 SGLFSSFEARTQY 204 (256)
Q Consensus 192 p~~~~~l~~l~~l 204 (256)
|.++..+..++.+
T Consensus 255 ~~~~~~~~~L~~l 267 (317)
T 3o53_A 255 RDFFSKNQRVQTV 267 (317)
T ss_dssp HHHHHTCHHHHHH
T ss_pred HHHHhccccceEE
Confidence 7777776665544
No 75
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.25 E-value=8e-12 Score=110.16 Aligned_cols=117 Identities=19% Similarity=0.234 Sum_probs=98.7
Q ss_pred hhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~ 140 (256)
|++|++++|.++.+|. .+ .+++|++|++++|.++++ .|..++.+++|++|++++
T Consensus 54 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~------------------------~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI------------------------EEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE------------------------CTTTTTTCTTCCEEECCS
T ss_pred CcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc------------------------CHhhcCCCCCCCEEECCC
Confidence 9999999999999988 46 899999999999998753 256688999999999999
Q ss_pred CCCcccccc-ccCCCCCCEEeeccCcCCcccCC--C---CCCCcEEeccCccccccc-ccchhchhhhhhc
Q 043683 141 NNFERIPES-VIQLSKLGRLCLRYWERLQSLPK--L---PCKLHELDAHHCTALESL-SGLFSSFEARTQY 204 (256)
Q Consensus 141 n~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~--~---l~~L~~L~l~~~~~l~~~-p~~~~~l~~l~~l 204 (256)
|+++.+|.. ++++++|++|++++| .++.+|. . +++|++|++++|..+..+ |..++.+++++.+
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 999999865 899999999999984 5778887 2 889999999998666666 4567776666644
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.25 E-value=1.8e-11 Score=104.12 Aligned_cols=136 Identities=21% Similarity=0.250 Sum_probs=74.8
Q ss_pred hhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhhHH-HHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEc
Q 043683 63 LRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQLLD-SVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDL 138 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~-~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l 138 (256)
+++|++++|.++.++. .+ .+++|++|++++|.++.+.. .+.. +..+..+.++++ ++. ..+..+..+++|++|++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS-LSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVA 107 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEEC
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccC-CcCCCEEECCCCccCc-cChhhhcCCccccEEEC
Confidence 9999999999999987 56 89999999999999876411 0000 001111111111 110 11244555666666666
Q ss_pred cCCCCccccc-cccCCCCCCEEeeccCcCCcc--cCCC---CCCCcEEeccCcccccccccchhchhhh
Q 043683 139 QKNNFERIPE-SVIQLSKLGRLCLRYWERLQS--LPKL---PCKLHELDAHHCTALESLSGLFSSFEAR 201 (256)
Q Consensus 139 ~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~--lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l 201 (256)
++|+++.++. .++.+++|++|++++|. +.. +|.. +++|++|++++|......+..+..+..+
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence 6666665543 45566666666666533 333 3333 5566666666654322223344444433
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.25 E-value=1.9e-11 Score=103.93 Aligned_cols=139 Identities=26% Similarity=0.352 Sum_probs=96.9
Q ss_pred eCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHH-HHHhcccCCCCchhhc-c
Q 043683 45 GMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDS-VRGILTRTPNTPLGQH-L 118 (256)
Q Consensus 45 ~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~-L~~Ll~~lp~~~l~~~-L 118 (256)
+++++....+....|.++ |++|++++|.++.+|.. + .+++|++|++++|.++.+.+. +.. +..+..+.++++ +
T Consensus 67 ~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 67 YLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS-LTKLTYLSLGYNEL 145 (270)
T ss_dssp ECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCC
T ss_pred ECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-CcCCCEEECCCCcC
Confidence 334444444445555555 99999999999998876 4 789999999999988765111 111 111111111111 1
Q ss_pred Cccccc-cccCCCCCCcEEEccCCCCccccc-cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccc
Q 043683 119 NTLVLP-ENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTA 187 (256)
Q Consensus 119 ~~L~lp-~~~~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~ 187 (256)
+ .+| ..++.+++|++|++++|+++.+|+ .+..+++|++|++++| .+..+|.. +++|++|++++|+.
T Consensus 146 ~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 146 Q--SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp C--CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred C--ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence 1 223 347889999999999999998885 5889999999999985 57778764 78999999998763
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.25 E-value=6.1e-12 Score=109.27 Aligned_cols=135 Identities=17% Similarity=0.278 Sum_probs=85.8
Q ss_pred HHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCc
Q 043683 59 FRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLG 134 (256)
Q Consensus 59 f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~ 134 (256)
|.++ |++|++++|.++.+| .+ .+++|++|++++|.++.+.. +.. +..+..+.++++ ++ .++. ++.+++|+
T Consensus 81 ~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~-l~~L~~L~l~~n~l~--~~~~-l~~l~~L~ 154 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAG-LSNLQVLYLDLNQIT--NISP-LAGLTNLQ 154 (308)
T ss_dssp GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTT-CTTCCEEECCSSCCC--CCGG-GGGCTTCC
T ss_pred HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh-hcC-CCCCCEEECCCCccC--cCcc-ccCCCCcc
Confidence 4444 899999999988886 46 88999999999998876511 111 111111112211 11 1122 56777888
Q ss_pred EEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccchhchhhhhh
Q 043683 135 KLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFEARTQ 203 (256)
Q Consensus 135 ~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~ 203 (256)
+|++++|+++.++. +..+++|+.|++++| .+..++.. +++|++|++++|. +..++. +..+++++.
T Consensus 155 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~ 221 (308)
T 1h6u_A 155 YLSIGNAQVSDLTP-LANLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNNQ-ISDVSP-LANTSNLFI 221 (308)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTSC-CCBCGG-GTTCTTCCE
T ss_pred EEEccCCcCCCChh-hcCCCCCCEEECCCC-ccCcChhhcCCCCCCEEEccCCc-cCcccc-ccCCCCCCE
Confidence 88888888877775 777888888888774 45666554 6778888887764 444542 455554443
No 79
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.24 E-value=1.3e-11 Score=107.92 Aligned_cols=144 Identities=22% Similarity=0.322 Sum_probs=98.1
Q ss_pred CCCCeeeecChHHHHhh-------hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhh------HH--HHHHh---
Q 043683 46 MSKVKEIHLNPDTFRKM-------LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQL------LD--SVRGI--- 105 (256)
Q Consensus 46 l~~l~~~~l~~~~f~~l-------L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l------~~--~L~~L--- 105 (256)
+.+++.+++..+.+..+ |++|++++|.++.+|.. + .+++|++|++++|.++.. +. +|+.|
T Consensus 101 l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~ 180 (332)
T 2ft3_A 101 LRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS 180 (332)
T ss_dssp CTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCC
T ss_pred cCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECc
Confidence 34445555444433332 99999999999999886 5 899999999999988642 11 22332
Q ss_pred ---cccCCCCchhhccCcc---------ccccccCCCCCCcEEEccCCCCccccc-cccCCCCCCEEeeccCcCCcccCC
Q 043683 106 ---LTRTPNTPLGQHLNTL---------VLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLCLRYWERLQSLPK 172 (256)
Q Consensus 106 ---l~~lp~~~l~~~L~~L---------~lp~~~~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~ 172 (256)
++.+|.. +...|+.| ..|..+..+++|++|++++|+++.+++ .++.+++|++|++++| .+..+|.
T Consensus 181 ~n~l~~l~~~-~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~ 258 (332)
T 2ft3_A 181 EAKLTGIPKD-LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPA 258 (332)
T ss_dssp SSBCSSCCSS-SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCT
T ss_pred CCCCCccCcc-ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecCh
Confidence 3333321 11223444 224667888888899998888887764 6888888999998874 5778887
Q ss_pred C---CCCCcEEeccCcccccccc
Q 043683 173 L---PCKLHELDAHHCTALESLS 192 (256)
Q Consensus 173 ~---l~~L~~L~l~~~~~l~~~p 192 (256)
. +++|++|++++|. +..+|
T Consensus 259 ~l~~l~~L~~L~l~~N~-l~~~~ 280 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHTNN-ITKVG 280 (332)
T ss_dssp TGGGCTTCCEEECCSSC-CCBCC
T ss_pred hhhcCccCCEEECCCCC-CCccC
Confidence 5 7788888888865 44444
No 80
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.24 E-value=3.1e-11 Score=107.73 Aligned_cols=55 Identities=9% Similarity=0.154 Sum_probs=43.1
Q ss_pred eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhh
Q 043683 44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQL 98 (256)
Q Consensus 44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l 98 (256)
+++++.....+....|.++ |++|++++|.++.+|+ .+ .+++|++|++++|.++.+
T Consensus 50 l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 108 (390)
T 3o6n_A 50 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL 108 (390)
T ss_dssp EEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred EEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC
Confidence 3444455556777778877 9999999999988876 56 899999999999988764
No 81
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.24 E-value=3.1e-11 Score=118.68 Aligned_cols=73 Identities=19% Similarity=0.276 Sum_probs=59.2
Q ss_pred cccccC--CCCCCcEEEccCCCCccccccccCCCCCCEEeecc------CcCCcccCCC---CCCCcEEeccCccccccc
Q 043683 123 LPENIG--QLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRY------WERLQSLPKL---PCKLHELDAHHCTALESL 191 (256)
Q Consensus 123 lp~~~~--~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~------~~~l~~lp~~---l~~L~~L~l~~~~~l~~~ 191 (256)
+|..+. .+++|+.|++++|+++.+|..++.+++|+.|++++ |...+.+|.. +++|+.|++++|. ++.+
T Consensus 743 lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~I 821 (876)
T 4ecn_A 743 LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKV 821 (876)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBC
T ss_pred chHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCcc
Confidence 477776 88899999999999988888888999999999876 5556677765 7889999999876 4888
Q ss_pred ccchh
Q 043683 192 SGLFS 196 (256)
Q Consensus 192 p~~~~ 196 (256)
|..+.
T Consensus 822 p~~l~ 826 (876)
T 4ecn_A 822 DEKLT 826 (876)
T ss_dssp CSCCC
T ss_pred CHhhc
Confidence 88754
No 82
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.24 E-value=1.3e-11 Score=114.01 Aligned_cols=128 Identities=21% Similarity=0.156 Sum_probs=92.0
Q ss_pred EeeCCCCeeeecChHHHHhhhhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCc
Q 043683 43 CLGMSKVKEIHLNPDTFRKMLRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNT 120 (256)
Q Consensus 43 ~l~l~~l~~~~l~~~~f~~lL~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~ 120 (256)
.+|++++....+....+ .-+++|++++|.+..+++ .| .+++|++|++++|+++++
T Consensus 4 ~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------------------- 60 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL---------------------- 60 (520)
T ss_dssp EEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE----------------------
T ss_pred eEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCc----------------------
Confidence 34555544434433222 338888888888888774 46 788888888888888653
Q ss_pred cccccccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcc--cCCC---CCCCcEEeccCcccccccccch
Q 043683 121 LVLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQS--LPKL---PCKLHELDAHHCTALESLSGLF 195 (256)
Q Consensus 121 L~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~--lp~~---l~~L~~L~l~~~~~l~~~p~~~ 195 (256)
.|..|+.+++|++|++++|+++.+|.. .+++|++|++++|. +.. +|.. +++|++|++++|.... ..+
T Consensus 61 --~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~ 132 (520)
T 2z7x_B 61 --DISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEK---SSV 132 (520)
T ss_dssp --EGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCCG---GGG
T ss_pred --ChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcccch---hhc
Confidence 367788999999999999999999877 89999999999855 444 4544 8899999999876332 344
Q ss_pred hchhhh
Q 043683 196 SSFEAR 201 (256)
Q Consensus 196 ~~l~~l 201 (256)
..++.+
T Consensus 133 ~~l~~L 138 (520)
T 2z7x_B 133 LPIAHL 138 (520)
T ss_dssp GGGTTS
T ss_pred cccccc
Confidence 455544
No 83
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=1.4e-11 Score=115.82 Aligned_cols=110 Identities=15% Similarity=0.211 Sum_probs=92.0
Q ss_pred eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCc
Q 043683 44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNT 120 (256)
Q Consensus 44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~ 120 (256)
++++++....+.. |.++ |++|++++|.++.+|..+ .+++|++|+|++|.++++
T Consensus 446 L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l---------------------- 501 (567)
T 1dce_A 446 LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV---------------------- 501 (567)
T ss_dssp EECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC----------------------
T ss_pred EEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCC----------------------
Confidence 5566655555543 6666 999999999999999999 999999999999999753
Q ss_pred cccccccCCCCCCcEEEccCCCCccc--cccccCCCCCCEEeeccCcCCcccCCC-------CCCCcEEec
Q 043683 121 LVLPENIGQLSSLGKLDLQKNNFERI--PESVIQLSKLGRLCLRYWERLQSLPKL-------PCKLHELDA 182 (256)
Q Consensus 121 L~lp~~~~~l~~L~~L~l~~n~l~~l--p~~i~~l~~L~~L~l~~~~~l~~lp~~-------l~~L~~L~l 182 (256)
| .++.+++|++|++++|+++.+ |..++.+++|+.|++++|. +..+|+. +++|+.|++
T Consensus 502 ---p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 502 ---D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ---G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ---c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 6 779999999999999999988 8899999999999999955 6666553 678888753
No 84
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=3.3e-11 Score=95.94 Aligned_cols=100 Identities=25% Similarity=0.339 Sum_probs=78.7
Q ss_pred hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~ 140 (256)
+++|++++|.++.+|+. + .+++|++|++++|.++.+ .+..++.+++|++|++++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL------------------------PDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC------------------------CTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe------------------------ChhHccCCCccCEEECCC
Confidence 88888988888888775 4 788999999999888653 123457888899999999
Q ss_pred CCCccccc-cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccc
Q 043683 141 NNFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTA 187 (256)
Q Consensus 141 n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~ 187 (256)
|+++.+|+ .+..+++|++|++++| .+..+|.. +++|++|++++|+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence 99988775 4678899999999884 56777764 67888999988753
No 85
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.23 E-value=2.4e-11 Score=110.22 Aligned_cols=115 Identities=23% Similarity=0.288 Sum_probs=69.7
Q ss_pred hhhhhccCCCCCccC-Ccc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLP-SNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp-~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~ 140 (256)
|++|++++|.+..++ ..+ .+++|++|++++|.++++ .|..++.+++|++|++++
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~------------------------~~~~~~~l~~L~~L~Ls~ 332 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI------------------------DDNAFWGLTHLLKLNLSQ 332 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE------------------------CTTTTTTCTTCCEEECCS
T ss_pred ceEEEecCccccccchhhcccCCCCCEEECCCCccccc------------------------ChhHhcCcccCCEEECCC
Confidence 778888888876654 445 778888888888877653 244556666666666666
Q ss_pred CCCccc-cccccCCCCCCEEeeccCcCCccc-CCC---CCCCcEEeccCccccccccc-chhchhhhhh
Q 043683 141 NNFERI-PESVIQLSKLGRLCLRYWERLQSL-PKL---PCKLHELDAHHCTALESLSG-LFSSFEARTQ 203 (256)
Q Consensus 141 n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~l-p~~---l~~L~~L~l~~~~~l~~~p~-~~~~l~~l~~ 203 (256)
|.++.+ |..++.+++|++|++++|. +..+ |.. +++|++|++++|. +..+|. .+..+++++.
T Consensus 333 N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~ 399 (455)
T 3v47_A 333 NFLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQK 399 (455)
T ss_dssp SCCCEECGGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCE
T ss_pred CccCCcChhHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccE
Confidence 666654 3455666666666666643 3333 332 5666666666654 333443 3345544443
No 86
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.22 E-value=4.2e-11 Score=113.00 Aligned_cols=55 Identities=9% Similarity=0.154 Sum_probs=43.2
Q ss_pred eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhh
Q 043683 44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQL 98 (256)
Q Consensus 44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l 98 (256)
+++++.....+.+..|.++ |++|++++|.++.+|+ .| .+++|++|++++|.++.+
T Consensus 56 l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 114 (597)
T 3oja_B 56 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL 114 (597)
T ss_dssp EEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred EEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC
Confidence 3444555556667777777 9999999999988876 56 899999999999998764
No 87
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.22 E-value=2.4e-11 Score=103.30 Aligned_cols=108 Identities=23% Similarity=0.255 Sum_probs=66.3
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCcc--------ccccccCCCCCC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTL--------VLPENIGQLSSL 133 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L--------~lp~~~~~l~~L 133 (256)
|++|++++|.++.+|+ + .+++|++|++++|+++.+ |.+.. ..|+.| .+ ..++.+++|
T Consensus 65 L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l-----------~~~~~-~~L~~L~L~~N~l~~~-~~l~~l~~L 130 (263)
T 1xeu_A 65 LKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNL-----------NGIPS-ACLSRLFLDNNELRDT-DSLIHLKNL 130 (263)
T ss_dssp CCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCC-----------TTCCC-SSCCEEECCSSCCSBS-GGGTTCTTC
T ss_pred CCEEECCCCccCCChh-hccCCCCCEEECCCCccCCc-----------Ccccc-CcccEEEccCCccCCC-hhhcCcccc
Confidence 7777777777777766 6 777777777777776543 21110 111222 11 245667777
Q ss_pred cEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcc
Q 043683 134 GKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCT 186 (256)
Q Consensus 134 ~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~ 186 (256)
++|++++|+++.+| .++.+++|+.|++++| .+..++.. +++|++|++++|.
T Consensus 131 ~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 131 EILSIRNNKLKSIV-MLGFLSKLEVLDLHGN-EITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CEEECTTSCCCBCG-GGGGCTTCCEEECTTS-CCCBCTTSTTCCCCCEEEEEEEE
T ss_pred cEEECCCCcCCCCh-HHccCCCCCEEECCCC-cCcchHHhccCCCCCEEeCCCCc
Confidence 77777777777665 5667777777777763 34454433 6677777777654
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.21 E-value=3.6e-12 Score=106.33 Aligned_cols=114 Identities=17% Similarity=0.234 Sum_probs=67.7
Q ss_pred eeecChHHHHhh--hhhhhccC-CCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCcccccc
Q 043683 51 EIHLNPDTFRKM--LRYFHWHG-CPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPE 125 (256)
Q Consensus 51 ~~~l~~~~f~~l--L~~L~ls~-n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~ 125 (256)
...+.+..|.++ |++|++++ |.++.+|+. | .+++|++|++++|.++.+ |.
T Consensus 68 l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~l-------------------------p~ 122 (239)
T 2xwt_C 68 LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF-------------------------PD 122 (239)
T ss_dssp CCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSC-------------------------CC
T ss_pred cceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccc-------------------------cc
Confidence 334555556555 99999998 899999865 5 899999999999998753 22
Q ss_pred ccCCCCCCc---EEEccCC-CCccccc-cccCCCCCC-EEeeccCcCCcccCCC---CCCCcEEeccCccccccc
Q 043683 126 NIGQLSSLG---KLDLQKN-NFERIPE-SVIQLSKLG-RLCLRYWERLQSLPKL---PCKLHELDAHHCTALESL 191 (256)
Q Consensus 126 ~~~~l~~L~---~L~l~~n-~l~~lp~-~i~~l~~L~-~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~ 191 (256)
++.+++|+ +|++++| +++.+|+ .+.++++|+ .|++++| .+..+|.. .++|++|++++|..+..+
T Consensus 123 -~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i 195 (239)
T 2xwt_C 123 -LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVI 195 (239)
T ss_dssp -CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEE
T ss_pred -cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccC
Confidence 34444444 5555555 5554443 244555555 5555542 23444433 234555555554323333
No 89
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.21 E-value=2.1e-11 Score=103.64 Aligned_cols=133 Identities=23% Similarity=0.376 Sum_probs=85.4
Q ss_pred HHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCc
Q 043683 59 FRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLG 134 (256)
Q Consensus 59 f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~ 134 (256)
+.++ |++|++++|.++.+| .+ .+++|++|++++|.++.+.+ +.. +..+..+.++++ ++. +|.. .. ++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~-l~~L~~L~L~~N~l~~--l~~~-~~-~~L~ 109 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKD-LTKLEELSVNRNRLKN--LNGI-PS-ACLS 109 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTT-CSSCCEEECCSSCCSC--CTTC-CC-SSCC
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hcc-CCCCCEEECCCCccCC--cCcc-cc-Cccc
Confidence 4555 999999999999998 67 89999999999999887522 111 122222222222 222 2222 22 6777
Q ss_pred EEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccchhchhhhh
Q 043683 135 KLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFEART 202 (256)
Q Consensus 135 ~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~~~l~~l~ 202 (256)
+|++++|+++.+| .++.+++|+.|++++ +.++.+|.. +++|++|++++|. +..+ ..+..+.+++
T Consensus 110 ~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~~l~~l~~L~~L~L~~N~-i~~~-~~l~~l~~L~ 175 (263)
T 1xeu_A 110 RLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIVMLGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVN 175 (263)
T ss_dssp EEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCGGGGGCTTCCEEECTTSC-CCBC-TTSTTCCCCC
T ss_pred EEEccCCccCCCh-hhcCcccccEEECCC-CcCCCChHHccCCCCCEEECCCCc-Ccch-HHhccCCCCC
Confidence 7777777777765 577777888888877 446666644 6778888887764 3434 4444444444
No 90
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.20 E-value=1.6e-11 Score=118.78 Aligned_cols=115 Identities=18% Similarity=0.091 Sum_probs=87.3
Q ss_pred hhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCC
Q 043683 64 RYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNN 142 (256)
Q Consensus 64 ~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~ 142 (256)
..++++.|.+...|..+ .+++|+.|+|++|.+..+ |..+..+++|++|+|++|.
T Consensus 204 ~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l-------------------------~~~~~~l~~L~~L~Ls~N~ 258 (727)
T 4b8c_D 204 DEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNI-------------------------SANIFKYDFLTRLYLNGNS 258 (727)
T ss_dssp ------------------CCCCCCEEECTTSCCSCC-------------------------CGGGGGCCSCSCCBCTTSC
T ss_pred cCccccccceecChhhhccCCCCcEEECCCCCCCCC-------------------------ChhhcCCCCCCEEEeeCCc
Confidence 33344444445445567 899999999999998753 7777889999999999999
Q ss_pred CccccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhchhhhhhcc
Q 043683 143 FERIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEARTQYF 205 (256)
Q Consensus 143 l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l~ 205 (256)
++.+|..++.+++|++|+|++|. +..+|.. +++|++|++++|. +..+|..++.+++|..|.
T Consensus 259 l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 259 LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLG 322 (727)
T ss_dssp CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEE
T ss_pred CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEe
Confidence 99999999999999999999854 7799986 8899999999974 789999999988887654
No 91
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.20 E-value=8.5e-12 Score=96.48 Aligned_cols=96 Identities=24% Similarity=0.301 Sum_probs=82.4
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN 141 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n 141 (256)
|++|++++|.++.+ ..+ .+++|++|++++|.++.. +|..++.+++|++|++++|
T Consensus 44 L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~------------------------~~~~~~~l~~L~~L~ls~N 98 (149)
T 2je0_A 44 LEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGG------------------------LEVLAEKCPNLTHLNLSGN 98 (149)
T ss_dssp CCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSC------------------------THHHHHHCTTCCEEECTTS
T ss_pred CcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccch------------------------HHHHhhhCCCCCEEECCCC
Confidence 99999999999988 667 899999999999999762 2555667899999999999
Q ss_pred CCcccc--ccccCCCCCCEEeeccCcCCcccCC----C---CCCCcEEeccC
Q 043683 142 NFERIP--ESVIQLSKLGRLCLRYWERLQSLPK----L---PCKLHELDAHH 184 (256)
Q Consensus 142 ~l~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~----~---l~~L~~L~l~~ 184 (256)
.++.+| ..++.+++|++|++++| .+..+|. . +++|++|++++
T Consensus 99 ~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 99 KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 999876 78999999999999985 5777776 2 88999998863
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.20 E-value=1.6e-11 Score=105.83 Aligned_cols=117 Identities=24% Similarity=0.363 Sum_probs=89.5
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~ 140 (256)
|++|++++|.++.+|. + .+++|++|++++|.++.+ +.+.. +..+..+.++++ ++.+ ..++.+++|++|++++
T Consensus 92 L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~-~~l~~-l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~ 165 (291)
T 1h6t_A 92 LGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDI-NGLVH-LPQLESLYLGNNKITDI---TVLSRLTKLDTLSLED 165 (291)
T ss_dssp CCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCC-GGGGG-CTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCS
T ss_pred CCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCC-hhhcC-CCCCCEEEccCCcCCcc---hhhccCCCCCEEEccC
Confidence 9999999999998875 6 899999999999998765 11222 122222222222 2222 4678899999999999
Q ss_pred CCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCccc
Q 043683 141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTA 187 (256)
Q Consensus 141 n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~ 187 (256)
|+++.+++ +..+++|+.|++++| .+..+|.. +++|+.|++++|+.
T Consensus 166 N~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 166 NQISDIVP-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred Cccccchh-hcCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCcc
Confidence 99998886 999999999999985 57778765 88999999998763
No 93
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.19 E-value=4.1e-11 Score=106.21 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=93.6
Q ss_pred hhhhhccCCCCCccCCcc---ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEcc
Q 043683 63 LRYFHWHGCPLKSLPSNI---HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQ 139 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~---~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~ 139 (256)
+++|++++|.++.++... .+++|++|+|++|+++.+ .|..|..+++|++|+++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i------------------------~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI------------------------SSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE------------------------CTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc------------------------ChhhccCCCCCCEEECC
Confidence 899999999999998764 689999999999999764 24568899999999999
Q ss_pred CCCCccccc-cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccccch----hchhhhhh
Q 043683 140 KNNFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSGLF----SSFEARTQ 203 (256)
Q Consensus 140 ~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~~~----~~l~~l~~ 203 (256)
+|+++.+|+ .+..+.+|+.|++++|. +..++.. +++|++|++++|. +..+|... ..+.+++.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~ 167 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLML 167 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCE
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCE
Confidence 999998875 68999999999999854 6666442 7899999999975 67777754 44555553
No 94
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.19 E-value=4.9e-11 Score=113.67 Aligned_cols=148 Identities=20% Similarity=0.236 Sum_probs=82.7
Q ss_pred eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc--
Q 043683 44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-- 117 (256)
Q Consensus 44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-- 117 (256)
++++.+....+.+..|.++ |++|++++|.+..+++. + .+++|++|++++|.++.+ |.-.++++
T Consensus 30 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-----------~~~~~~~l~~ 98 (680)
T 1ziw_A 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL-----------SDKTFAFCTN 98 (680)
T ss_dssp EECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC-----------CTTTTTTCTT
T ss_pred EECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc-----------ChhhhccCCC
Confidence 3444444444555555555 66666666666555433 4 566666666666665433 11001111
Q ss_pred cCcc--------c-cccccCCCCCCcEEEccCCCCccc-cccccCCCCCCEEeeccCcCCcccCCC------CCCCcEEe
Q 043683 118 LNTL--------V-LPENIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLCLRYWERLQSLPKL------PCKLHELD 181 (256)
Q Consensus 118 L~~L--------~-lp~~~~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~------l~~L~~L~ 181 (256)
|+.| . .|..|+.+++|++|++++|.++.+ |..++++++|++|++++|. +..++.. .++|++|+
T Consensus 99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEE
T ss_pred CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEE
Confidence 1111 1 134567777777777777777744 3556777777777777643 4444432 36777777
Q ss_pred ccCcccccccccchhchhhhhh
Q 043683 182 AHHCTALESLSGLFSSFEARTQ 203 (256)
Q Consensus 182 l~~~~~l~~~p~~~~~l~~l~~ 203 (256)
+++|......|..+..+..+..
T Consensus 178 L~~n~l~~~~~~~~~~l~~L~~ 199 (680)
T 1ziw_A 178 LSSNQIKEFSPGCFHAIGRLFG 199 (680)
T ss_dssp CTTCCCCCBCTTGGGGSSEECE
T ss_pred CCCCcccccChhhhhhhhhhhh
Confidence 7776544445555655555544
No 95
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.18 E-value=4.9e-11 Score=113.68 Aligned_cols=141 Identities=18% Similarity=0.202 Sum_probs=98.8
Q ss_pred EeeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHH-HHHHhcccCCCCchhhc
Q 043683 43 CLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLD-SVRGILTRTPNTPLGQH 117 (256)
Q Consensus 43 ~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~-~L~~Ll~~lp~~~l~~~ 117 (256)
.++++.+....+.+..|.++ |++|++++|.+..+|+. | .+++|++|++++|.++.+.+ .+.. +..+..+.++++
T Consensus 53 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n 131 (680)
T 1ziw_A 53 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK-QKNLITLDLSHN 131 (680)
T ss_dssp EEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTT-CTTCCEEECCSS
T ss_pred EEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccc-cCCCCEEECCCC
Confidence 34556555566667788887 99999999999999985 7 89999999999999876411 1111 111111111111
Q ss_pred -cCccccccccCCCCCCcEEEccCCCCccccc-cc--cCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcc
Q 043683 118 -LNTLVLPENIGQLSSLGKLDLQKNNFERIPE-SV--IQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCT 186 (256)
Q Consensus 118 -L~~L~lp~~~~~l~~L~~L~l~~n~l~~lp~-~i--~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~ 186 (256)
++. ..|..++.+++|++|++++|.++.+++ .+ ..+++|+.|++++|. +..++.. +.+|+.|++.++.
T Consensus 132 ~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~~~ 206 (680)
T 1ziw_A 132 GLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQ 206 (680)
T ss_dssp CCSC-CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC-CCCBCTTGGGGSSEECEEECTTCC
T ss_pred cccc-cCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc-ccccChhhhhhhhhhhhhhccccc
Confidence 111 236678899999999999999997764 33 356899999999864 5555543 6788999988765
No 96
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.18 E-value=3.2e-11 Score=111.38 Aligned_cols=128 Identities=20% Similarity=0.169 Sum_probs=98.8
Q ss_pred EeeCCCCeeeecChHHHHhh--hhhhhccCCCCCcc-CCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhcc
Q 043683 43 CLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSL-PSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHL 118 (256)
Q Consensus 43 ~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~l-p~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L 118 (256)
.++++++....+.+..|.++ |++|++++|.++.+ |..| .+++|++|++++|+++.+
T Consensus 25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-------------------- 84 (520)
T 2z7x_B 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI-------------------- 84 (520)
T ss_dssp EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEE--------------------
T ss_pred EEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeec--------------------
Confidence 45667777677777888887 99999999999888 5567 999999999999998754
Q ss_pred CccccccccCCCCCCcEEEccCCCCcc--ccccccCCCCCCEEeeccCcCCcccCCC-CCCC--cEEeccCccc--cccc
Q 043683 119 NTLVLPENIGQLSSLGKLDLQKNNFER--IPESVIQLSKLGRLCLRYWERLQSLPKL-PCKL--HELDAHHCTA--LESL 191 (256)
Q Consensus 119 ~~L~lp~~~~~l~~L~~L~l~~n~l~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~-l~~L--~~L~l~~~~~--l~~~ 191 (256)
|.. .+++|++|++++|.++. +|..++++++|++|++++|. +....-. +++| ++|++++|.. ....
T Consensus 85 -----p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~ 156 (520)
T 2z7x_B 85 -----SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKSSVLPIAHLNISKVLLVLGETYGEKED 156 (520)
T ss_dssp -----ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGGGGGGGTTSCEEEEEEEECTTTTSSCC
T ss_pred -----Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchhhccccccceeeEEEeecccccccccc
Confidence 555 78889999999998885 56788999999999998854 4332111 6667 8888888765 4556
Q ss_pred ccchhch
Q 043683 192 SGLFSSF 198 (256)
Q Consensus 192 p~~~~~l 198 (256)
|..+..+
T Consensus 157 ~~~l~~l 163 (520)
T 2z7x_B 157 PEGLQDF 163 (520)
T ss_dssp TTTTTTC
T ss_pred ccccccc
Confidence 6666553
No 97
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.18 E-value=2.2e-11 Score=112.41 Aligned_cols=150 Identities=13% Similarity=0.182 Sum_probs=103.1
Q ss_pred CCeeeecChHHHHhh-------hhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhh-HHHHH-HhcccCCCCchhh
Q 043683 48 KVKEIHLNPDTFRKM-------LRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQL-LDSVR-GILTRTPNTPLGQ 116 (256)
Q Consensus 48 ~l~~~~l~~~~f~~l-------L~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l-~~~L~-~Ll~~lp~~~l~~ 116 (256)
+++.++++.+.+.+. |++|++++|.++.+++ .+ .+++|++|++++|.++.+ +..+. . +..+..+.+++
T Consensus 100 ~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~-l~~L~~L~Ls~ 178 (487)
T 3oja_A 100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS-SDTLEHLNLQY 178 (487)
T ss_dssp TCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGG-TTTCCEEECTT
T ss_pred CcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhh-CCcccEEecCC
Confidence 344444444444333 8888999998887644 56 788999999999988764 22221 1 11222222222
Q ss_pred c-cCccccccccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccc-ccc
Q 043683 117 H-LNTLVLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTAL-ESL 191 (256)
Q Consensus 117 ~-L~~L~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l-~~~ 191 (256)
+ ++.+ | ....+++|++|++++|.++.+|+.++.+++|+.|++++ +.+..+|.. +++|+.|++++|+.. ..+
T Consensus 179 N~l~~~--~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 179 NFIYDV--K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp SCCCEE--E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred Cccccc--c-ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCCCcCcch
Confidence 2 2211 2 23468999999999999999998999999999999998 457788876 789999999998755 466
Q ss_pred ccchhchhhhh
Q 043683 192 SGLFSSFEART 202 (256)
Q Consensus 192 p~~~~~l~~l~ 202 (256)
|.++..+..+.
T Consensus 255 ~~~~~~l~~L~ 265 (487)
T 3oja_A 255 RDFFSKNQRVQ 265 (487)
T ss_dssp HHHHTTCHHHH
T ss_pred HHHHHhCCCCc
Confidence 66666655544
No 98
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.17 E-value=5.5e-11 Score=110.64 Aligned_cols=146 Identities=22% Similarity=0.289 Sum_probs=91.2
Q ss_pred HHHHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHH--HHHHhcccCCCCchhhccCccccccccCCCC
Q 043683 57 DTFRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLD--SVRGILTRTPNTPLGQHLNTLVLPENIGQLS 131 (256)
Q Consensus 57 ~~f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~--~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~ 131 (256)
..|.++ |++|++++|.+..+|+.+ .+++|++|++++|.+....+ .+.. +..+..+.++++--.-..|..++.++
T Consensus 367 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~ 445 (570)
T 2z63_A 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLS 445 (570)
T ss_dssp HHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTT-CTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred ccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhc-CCCCCEEeCcCCcccccchhhhhcCC
Confidence 344444 777788877777777667 77788888888777654310 0000 01111111111100003466778888
Q ss_pred CCcEEEccCCCCc--cccccccCCCCCCEEeeccCcCCccc-CCC---CCCCcEEeccCcccccccccchhchhhhhhc
Q 043683 132 SLGKLDLQKNNFE--RIPESVIQLSKLGRLCLRYWERLQSL-PKL---PCKLHELDAHHCTALESLSGLFSSFEARTQY 204 (256)
Q Consensus 132 ~L~~L~l~~n~l~--~lp~~i~~l~~L~~L~l~~~~~l~~l-p~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l 204 (256)
+|++|++++|.++ .+|..++.+++|++|++++|. +..+ |.. +++|++|++++|......|..+..+++++.+
T Consensus 446 ~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence 8888888888886 578888888888888888865 4444 544 6788888888876444444556666666644
No 99
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.17 E-value=5e-11 Score=108.13 Aligned_cols=128 Identities=19% Similarity=0.229 Sum_probs=71.0
Q ss_pred eeCCCCeeeecChHHHHhh--hhhhhccCCCCC-ccCC-cc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhcc
Q 043683 44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLK-SLPS-NI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHL 118 (256)
Q Consensus 44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~-~lp~-~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L 118 (256)
++++++....+.+..|.++ |++|++++|.+. .+|+ .| .+++|++|++++|.++.+
T Consensus 35 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-------------------- 94 (455)
T 3v47_A 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL-------------------- 94 (455)
T ss_dssp EECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE--------------------
T ss_pred EEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc--------------------
Confidence 4445555445555556655 777888777754 5544 35 778888888888777543
Q ss_pred CccccccccCCCCCCcEEEccCCCCcc-cccc--ccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccccccc
Q 043683 119 NTLVLPENIGQLSSLGKLDLQKNNFER-IPES--VIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESL 191 (256)
Q Consensus 119 ~~L~lp~~~~~l~~L~~L~l~~n~l~~-lp~~--i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~ 191 (256)
.|..++.+++|++|++++|+++. +|.. ++.+++|++|++++|......|.. +++|++|++++|......
T Consensus 95 ----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 95 ----ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp ----CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred ----ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 24445555566666666555552 3322 555566666666554322222331 455566666555433333
Q ss_pred ccch
Q 043683 192 SGLF 195 (256)
Q Consensus 192 p~~~ 195 (256)
|..+
T Consensus 171 ~~~l 174 (455)
T 3v47_A 171 EEDL 174 (455)
T ss_dssp TTTS
T ss_pred hhhh
Confidence 4333
No 100
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.17 E-value=6.8e-11 Score=110.56 Aligned_cols=128 Identities=20% Similarity=0.182 Sum_probs=96.7
Q ss_pred EeeCCCCeeeecChHHHHhhhhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCc
Q 043683 43 CLGMSKVKEIHLNPDTFRKMLRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNT 120 (256)
Q Consensus 43 ~l~l~~l~~~~l~~~~f~~lL~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~ 120 (256)
.+|+++.....+....+ .-+++|++++|.+..+|+ .| .+++|++|++++|.++.+
T Consensus 35 ~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------------- 91 (562)
T 3a79_B 35 MVDYSNRNLTHVPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL---------------------- 91 (562)
T ss_dssp EEECTTSCCCSCCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE----------------------
T ss_pred EEEcCCCCCccCCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC----------------------
Confidence 45666655444443222 338999999999998885 56 899999999999998753
Q ss_pred cccccccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccC--CC---CCCCcEEeccCcccccccccch
Q 043683 121 LVLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLP--KL---PCKLHELDAHHCTALESLSGLF 195 (256)
Q Consensus 121 L~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp--~~---l~~L~~L~l~~~~~l~~~p~~~ 195 (256)
.|..|+.+++|++|++++|+++.+|.. .+++|++|++++|. +..+| .. +++|++|++++|.. .. ..+
T Consensus 92 --~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l-~~--~~~ 163 (562)
T 3a79_B 92 --DFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKF-RQ--LDL 163 (562)
T ss_dssp --CTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBC-CT--TTT
T ss_pred --CHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcc-cc--Cch
Confidence 366789999999999999999999977 89999999999854 66655 33 88999999998653 32 334
Q ss_pred hchhhh
Q 043683 196 SSFEAR 201 (256)
Q Consensus 196 ~~l~~l 201 (256)
..++.+
T Consensus 164 ~~l~~L 169 (562)
T 3a79_B 164 LPVAHL 169 (562)
T ss_dssp GGGTTS
T ss_pred hhhhhc
Confidence 444444
No 101
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.16 E-value=2.6e-11 Score=118.83 Aligned_cols=150 Identities=17% Similarity=0.133 Sum_probs=70.5
Q ss_pred eCCCCeeeecChHHHHhh--hhhhhccCCC-CCcc-CCcc-ccCCccEEeCcCCcchhh-HHHHHHhcccCCCCchhhc-
Q 043683 45 GMSKVKEIHLNPDTFRKM--LRYFHWHGCP-LKSL-PSNI-HLEKLVLLEMPHSNIQQL-LDSVRGILTRTPNTPLGQH- 117 (256)
Q Consensus 45 ~l~~l~~~~l~~~~f~~l--L~~L~ls~n~-l~~l-p~~~-~l~~L~~L~L~~n~l~~l-~~~L~~Ll~~lp~~~l~~~- 117 (256)
|++.+.+..+.+..|.++ |++|++++|. +..+ |..| .+++|++|+|++|.++.+ +..+.. +..+..+.++++
T Consensus 30 dLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~n~ 108 (844)
T 3j0a_A 30 LLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG-LFHLFELRLYFCG 108 (844)
T ss_dssp EEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS-CSSCCCEECTTCC
T ss_pred ECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC-CcccCEeeCcCCC
Confidence 334444444445555555 7888887774 5666 4446 778888888888777653 000000 000111111111
Q ss_pred cCccccccc--cCCCCCCcEEEccCCCCcccc--ccccCCCCCCEEeeccCcCCcccCCC---C--CCCcEEeccCcccc
Q 043683 118 LNTLVLPEN--IGQLSSLGKLDLQKNNFERIP--ESVIQLSKLGRLCLRYWERLQSLPKL---P--CKLHELDAHHCTAL 188 (256)
Q Consensus 118 L~~L~lp~~--~~~l~~L~~L~l~~n~l~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~~---l--~~L~~L~l~~~~~l 188 (256)
++. .+|.. ++.+++|++|++++|.++.++ +.++++++|++|++++|..-...|.. + ++|+.|+++.|...
T Consensus 109 l~~-~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 109 LSD-AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp CSS-CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred CCc-ccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccc
Confidence 000 01222 455555555555555555332 34555555555555553322222222 2 45555555555444
Q ss_pred cccccchh
Q 043683 189 ESLSGLFS 196 (256)
Q Consensus 189 ~~~p~~~~ 196 (256)
...|..++
T Consensus 188 ~~~~~~~~ 195 (844)
T 3j0a_A 188 SRVSVDWG 195 (844)
T ss_dssp CCCCCCCC
T ss_pred cccccchh
Confidence 44444433
No 102
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.16 E-value=3.6e-11 Score=105.35 Aligned_cols=117 Identities=16% Similarity=0.254 Sum_probs=58.5
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~ 140 (256)
|++|++++|.++.+|. + .+++|++|++++|.++.+. .+.. +..+..+.++++ ++ .++. +..+++|++|++++
T Consensus 68 L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~-l~~L~~L~l~~n~i~--~~~~-~~~l~~L~~L~l~~ 141 (347)
T 4fmz_A 68 LEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQN-LTNLRELYLNEDNIS--DISP-LANLTKMYSLNLGA 141 (347)
T ss_dssp CCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTT-CTTCSEEECTTSCCC--CCGG-GTTCTTCCEEECTT
T ss_pred ccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcC-CCcCCEEECcCCccc--Cchh-hccCCceeEEECCC
Confidence 7888888888777776 6 7788888888888776530 0000 000000111111 00 1122 44555555555555
Q ss_pred CCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcc
Q 043683 141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCT 186 (256)
Q Consensus 141 n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~ 186 (256)
|.....++.+..+++|++|++++|. +..++.. +++|++|++++|.
T Consensus 142 n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 142 NHNLSDLSPLSNMTGLNYLTVTESK-VKDVTPIANLTDLYSLSLNYNQ 188 (347)
T ss_dssp CTTCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECTTSC
T ss_pred CCCcccccchhhCCCCcEEEecCCC-cCCchhhccCCCCCEEEccCCc
Confidence 5333222235555555555555533 3333332 5556666666543
No 103
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.15 E-value=1.8e-10 Score=91.59 Aligned_cols=116 Identities=27% Similarity=0.343 Sum_probs=92.5
Q ss_pred hhhhhccCCCCCccCCccccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCC
Q 043683 63 LRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNN 142 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~ 142 (256)
.+.+++++|.++.+|..+ .++|++|++++|.++++ .+..++.+++|++|++++|+
T Consensus 9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~------------------------~~~~~~~l~~L~~L~l~~n~ 63 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSL------------------------PHGVFDKLTQLTKLSLSQNQ 63 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCC------------------------CTTTTTTCTTCSEEECCSSC
T ss_pred CCEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEe------------------------CHHHhcCcccccEEECCCCc
Confidence 356788899999999765 47999999999998753 13456889999999999999
Q ss_pred Cccccc-cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccccc-hhchhhhhhcc
Q 043683 143 FERIPE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSGL-FSSFEARTQYF 205 (256)
Q Consensus 143 l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~~-~~~l~~l~~l~ 205 (256)
++.+|+ .++.+++|++|++++| .++.+|.. +++|++|++++|. +..+|.. +..+++++.+.
T Consensus 64 l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 64 IQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEE
T ss_pred ceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEE
Confidence 998885 4689999999999984 57777763 7899999999975 5667664 46676666543
No 104
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.14 E-value=6.9e-11 Score=110.52 Aligned_cols=128 Identities=21% Similarity=0.224 Sum_probs=100.8
Q ss_pred EeeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhcc
Q 043683 43 CLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHL 118 (256)
Q Consensus 43 ~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L 118 (256)
.++++++....+.+..|.++ |++|++++|.++.+++ .| .+++|++|++++|.++.+
T Consensus 56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-------------------- 115 (562)
T 3a79_B 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI-------------------- 115 (562)
T ss_dssp EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEE--------------------
T ss_pred EEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCcc--------------------
Confidence 45667776667777788877 9999999999998854 57 899999999999998754
Q ss_pred CccccccccCCCCCCcEEEccCCCCcccc--ccccCCCCCCEEeeccCcCCcccCCC-CCCC--cEEeccCccc--cccc
Q 043683 119 NTLVLPENIGQLSSLGKLDLQKNNFERIP--ESVIQLSKLGRLCLRYWERLQSLPKL-PCKL--HELDAHHCTA--LESL 191 (256)
Q Consensus 119 ~~L~lp~~~~~l~~L~~L~l~~n~l~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~~-l~~L--~~L~l~~~~~--l~~~ 191 (256)
|.. .+++|++|++++|+++.+| ..++++++|++|++++|. +....-. +++| ++|++++|.. ....
T Consensus 116 -----p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~ 187 (562)
T 3a79_B 116 -----SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLDLLPVAHLHLSCILLDLVSYHIKGGE 187 (562)
T ss_dssp -----CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTTTGGGTTSCEEEEEEEESSCCCCSSS
T ss_pred -----Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCchhhhhhceeeEEEeecccccccccC
Confidence 655 7899999999999998765 689999999999999854 4443222 5566 9999998765 4555
Q ss_pred ccchhch
Q 043683 192 SGLFSSF 198 (256)
Q Consensus 192 p~~~~~l 198 (256)
|..+..+
T Consensus 188 ~~~l~~l 194 (562)
T 3a79_B 188 TESLQIP 194 (562)
T ss_dssp CCEEEEC
T ss_pred ccccccc
Confidence 6666553
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.14 E-value=2e-11 Score=107.74 Aligned_cols=148 Identities=19% Similarity=0.211 Sum_probs=77.2
Q ss_pred eeCCCCeeeecChHHHHhh--hhhhhccCCCC-CccCCc-c-ccCCccE-EeCcCCcchhh----HH---HHHHh-----
Q 043683 44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPL-KSLPSN-I-HLEKLVL-LEMPHSNIQQL----LD---SVRGI----- 105 (256)
Q Consensus 44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l-~~lp~~-~-~l~~L~~-L~L~~n~l~~l----~~---~L~~L----- 105 (256)
++++++++..+.+++|.++ |++|++++|.+ +.+|.+ | +++++.+ +.+.+|+++.+ +. +|+.|
T Consensus 35 L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n 114 (350)
T 4ay9_X 35 LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114 (350)
T ss_dssp EEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE
T ss_pred EEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccc
Confidence 3444555556666777777 88888888875 456654 4 6666654 44555666654 22 22222
Q ss_pred -cccCCCCchhhc----------------------------cCcc--------ccccccCCCCCCcEEEcc-CCCCcccc
Q 043683 106 -LTRTPNTPLGQH----------------------------LNTL--------VLPENIGQLSSLGKLDLQ-KNNFERIP 147 (256)
Q Consensus 106 -l~~lp~~~l~~~----------------------------L~~L--------~lp~~~~~l~~L~~L~l~-~n~l~~lp 147 (256)
+..+|....... ++.| .+|..+...++|++++++ +|.++.+|
T Consensus 115 ~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~ 194 (350)
T 4ay9_X 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELP 194 (350)
T ss_dssp CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCC
T ss_pred ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCC
Confidence 333333221111 1111 333333344455555554 45555555
Q ss_pred c-cccCCCCCCEEeeccCcCCcccCCC-CCCCcEEeccCcccccccc
Q 043683 148 E-SVIQLSKLGRLCLRYWERLQSLPKL-PCKLHELDAHHCTALESLS 192 (256)
Q Consensus 148 ~-~i~~l~~L~~L~l~~~~~l~~lp~~-l~~L~~L~l~~~~~l~~~p 192 (256)
+ .+..+++|+.|++++ +.++.+|.. +.+|+.|.+.++..++.+|
T Consensus 195 ~~~f~~l~~L~~LdLs~-N~l~~lp~~~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 195 NDVFHGASGPVILDISR-TRIHSLPSYGLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp TTTTTTEECCSEEECTT-SCCCCCCSSSCTTCCEEECTTCTTCCCCC
T ss_pred HHHhccCcccchhhcCC-CCcCccChhhhccchHhhhccCCCcCcCC
Confidence 3 345556666666665 345555554 5556666555555555555
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.14 E-value=6.7e-11 Score=112.09 Aligned_cols=115 Identities=22% Similarity=0.315 Sum_probs=55.1
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~ 140 (256)
|+.|++++|.+..+|+ + .+++|+.|+|++|.++.+. .+.. +..+..+.++++ +.. ...+..+++|+.|+|++
T Consensus 67 L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~-l~~L~~L~Ls~N~l~~---l~~l~~l~~L~~L~Ls~ 140 (605)
T 1m9s_A 67 VTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKD-LKKLKSLSLEHNGISD---INGLVHLPQLESLYLGN 140 (605)
T ss_dssp CCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTT-CTTCCEEECTTSCCCC---CGGGGGCTTCSEEECCS
T ss_pred CCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhcc-CCCCCEEEecCCCCCC---CccccCCCccCEEECCC
Confidence 7777777777766665 5 6777777777777665431 0100 111111111111 111 12244455555555555
Q ss_pred CCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCc
Q 043683 141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHC 185 (256)
Q Consensus 141 n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~ 185 (256)
|.++.+ +.+..+++|+.|++++|. +..++.. +++|+.|++++|
T Consensus 141 N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 141 NKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKN 185 (605)
T ss_dssp SCCCCC-GGGGSCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSS
T ss_pred CccCCc-hhhcccCCCCEEECcCCc-CCCchhhccCCCCCEEECcCC
Confidence 555544 345555555555555432 3333222 455555555554
No 107
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.14 E-value=7e-11 Score=108.16 Aligned_cols=117 Identities=23% Similarity=0.353 Sum_probs=61.1
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhH---HHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEE
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLL---DSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLD 137 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~---~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~ 137 (256)
|++|++++|.++.+| ++ .+++|++|++++|+++++. .+|+.| .++++ ++ .+| +++.+++|++|+
T Consensus 133 L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L-------~L~~n~l~--~l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 133 LEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI-------AAGNNQLE--ELP-ELQNLPFLTAIY 201 (454)
T ss_dssp CCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEE-------ECCSSCCS--SCC-CCTTCTTCCEEE
T ss_pred CCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCcccccEE-------ECcCCcCC--cCc-cccCCCCCCEEE
Confidence 666666666666666 35 6666777777666665421 111111 01111 11 123 355666666666
Q ss_pred ccCCCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccch
Q 043683 138 LQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLF 195 (256)
Q Consensus 138 l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~ 195 (256)
+++|+++.+|... .+|++|++++| .+..+|.. +++|++|++++|. +..+|..+
T Consensus 202 l~~N~l~~l~~~~---~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~l~~N~-l~~l~~~~ 256 (454)
T 1jl5_A 202 ADNNSLKKLPDLP---LSLESIVAGNN-ILEELPELQNLPFLTTIYADNNL-LKTLPDLP 256 (454)
T ss_dssp CCSSCCSSCCCCC---TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSC-CSSCCSCC
T ss_pred CCCCcCCcCCCCc---CcccEEECcCC-cCCcccccCCCCCCCEEECCCCc-CCcccccc
Confidence 6666666555432 35666666653 34455544 5666666666643 44455433
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.13 E-value=5.2e-11 Score=112.82 Aligned_cols=132 Identities=16% Similarity=0.240 Sum_probs=97.8
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~ 140 (256)
|+.|++++|.+..+| .+ .+++|+.|+|++|.+..+.+ +.. +..+..+.++++ ++. +..++.+++|++|+|++
T Consensus 45 L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~-l~~L~~L~Ls~N~l~~---l~~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 45 IDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTN-LKNLGWLFLDENKIKD---LSSLKDLKKLKSLSLEH 118 (605)
T ss_dssp CCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGG-CTTCCEEECCSSCCCC---CTTSTTCTTCCEEECTT
T ss_pred CCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hcc-CCCCCEEECcCCCCCC---ChhhccCCCCCEEEecC
Confidence 899999999999998 47 99999999999999887632 222 222222222222 221 23678999999999999
Q ss_pred CCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccchhchhhhhhc
Q 043683 141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFEARTQY 204 (256)
Q Consensus 141 n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l 204 (256)
|.++.+| .+..+++|+.|++++| .+..++.. +++|+.|++++|. +..++. +..+++|..|
T Consensus 119 N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L 180 (605)
T 1m9s_A 119 NGISDIN-GLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNL 180 (605)
T ss_dssp SCCCCCG-GGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEE
T ss_pred CCCCCCc-cccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCc-CCCchh-hccCCCCCEE
Confidence 9999876 6889999999999985 46666554 8899999999976 455544 6666666644
No 109
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.12 E-value=3.5e-11 Score=104.26 Aligned_cols=139 Identities=15% Similarity=0.192 Sum_probs=93.4
Q ss_pred eCCCCeeeecChHHHHhh--hhhhhccCCCCCc---cCC--cc-ccCCccEEeCcCCcchhhHHHHHHh---cccCCCCc
Q 043683 45 GMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKS---LPS--NI-HLEKLVLLEMPHSNIQQLLDSVRGI---LTRTPNTP 113 (256)
Q Consensus 45 ~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~---lp~--~~-~l~~L~~L~L~~n~l~~l~~~L~~L---l~~lp~~~ 113 (256)
+++++....+.+..|.++ |++|++++|.+.. ++. .+ .+++|++|++++|+++.+......+ +..+..+.
T Consensus 151 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~ 230 (310)
T 4glp_A 151 SIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLD 230 (310)
T ss_dssp EEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEE
T ss_pred EeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEE
Confidence 334444444445555555 9999999998653 432 23 7889999999999987542211111 23333333
Q ss_pred hhhc-cCccccccccCCC---CCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCccc
Q 043683 114 LGQH-LNTLVLPENIGQL---SSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTA 187 (256)
Q Consensus 114 l~~~-L~~L~lp~~~~~l---~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~ 187 (256)
++++ ++. ..|..++.+ ++|++|++++|+++.+|..+. ++|+.|++++| .+..+|.. +++|+.|++++|+.
T Consensus 231 Ls~N~l~~-~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 231 LSHNSLRA-TVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CTTSCCCC-CCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTTT
T ss_pred CCCCCCCc-cchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcCCCC
Confidence 3333 221 135556665 699999999999999998775 89999999984 56776654 89999999998763
No 110
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.11 E-value=1.1e-10 Score=106.97 Aligned_cols=121 Identities=18% Similarity=0.250 Sum_probs=71.9
Q ss_pred HHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh-HHHHHHhcccCCCCchhhc-cCccccccccCCCCCC
Q 043683 59 FRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL-LDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSL 133 (256)
Q Consensus 59 f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l-~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L 133 (256)
|..+ |++|++++|.++.+| + .+++|++|++++|.++++ +.++ ..+..+.++++ ++. +| ++.+++|
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~l----~~L~~L~L~~N~l~~--l~--~~~l~~L 129 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLDVTPL----TKLTYLNCDTNKLTK--LD--VSQNPLL 129 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTC----TTCCEEECCSSCCSC--CC--CTTCTTC
T ss_pred hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceeecCCC----CcCCEEECCCCcCCe--ec--CCCCCcC
Confidence 4444 899999999988886 7 889999999999988764 1111 11111111111 111 12 5666677
Q ss_pred cEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC-CCCCcEEeccCcccccccc
Q 043683 134 GKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL-PCKLHELDAHHCTALESLS 192 (256)
Q Consensus 134 ~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-l~~L~~L~l~~~~~l~~~p 192 (256)
++|++++|+++.+| ++.+++|++|++++|..++.++-. +++|++|++++|. +..+|
T Consensus 130 ~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~-l~~l~ 186 (457)
T 3bz5_A 130 TYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK-ITELD 186 (457)
T ss_dssp CEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSC-CCCCC
T ss_pred CEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCc-cceec
Confidence 77777777666654 556666666666665555555333 5566666666543 33343
No 111
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.11 E-value=8.1e-11 Score=111.82 Aligned_cols=71 Identities=28% Similarity=0.316 Sum_probs=59.2
Q ss_pred CCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCCCCCCcEEeccCcccccccccchhchhhhhhcc
Q 043683 130 LSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCTALESLSGLFSSFEARTQYF 205 (256)
Q Consensus 130 l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l~ 205 (256)
+++|++|++++|+++.+| ..+++|+.|++++| .+..+|..+++|++|++++|. +..+|..+.+++++..+.
T Consensus 220 ~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 220 PSGLKELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVN 290 (622)
T ss_dssp CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEE
T ss_pred CCCCCEEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCCC-CCcCCHHHhhccccCEEE
Confidence 477899999999999888 45688999999984 678888888899999999975 678999888888777553
No 112
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.11 E-value=9.2e-11 Score=107.44 Aligned_cols=128 Identities=22% Similarity=0.221 Sum_probs=91.5
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~ 140 (256)
|++|++++|.++.+| .+ .+++|++|++++|.++++. +.. +..+..+.++++ ++. +| ++.+++|++|++++
T Consensus 44 L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~-l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 44 LTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQ-NTNLTYLACDSNKLTN--LD--VTPLTKLTYLNCDT 115 (457)
T ss_dssp CCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTT-CTTCSEEECCSSCCSC--CC--CTTCTTCCEEECCS
T ss_pred CCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--ccc-CCCCCEEECcCCCCce--ee--cCCCCcCCEEECCC
Confidence 999999999999997 67 9999999999999988651 111 111111212222 222 22 67888999999999
Q ss_pred CCCccccccccCCCCCCEEeeccCcCCcccCCC-CCCCcEEeccCcccccccccchhchhhhhh
Q 043683 141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKL-PCKLHELDAHHCTALESLSGLFSSFEARTQ 203 (256)
Q Consensus 141 n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~ 203 (256)
|+++.+| ++.+++|++|++++| .+..++-. +++|++|++++|..++.+ .++.+++++.
T Consensus 116 N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 116 NKLTKLD--VSQNPLLTYLNCARN-TLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174 (457)
T ss_dssp SCCSCCC--CTTCTTCCEEECTTS-CCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred CcCCeec--CCCCCcCCEEECCCC-ccceeccccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence 9988876 788899999999884 46666644 888999999988766666 3455555543
No 113
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.09 E-value=1.3e-10 Score=113.98 Aligned_cols=133 Identities=19% Similarity=0.181 Sum_probs=70.1
Q ss_pred hhhhhccCCCCCcc-CCcc-ccCCccEEeCcCCcch-hh-HHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEE
Q 043683 63 LRYFHWHGCPLKSL-PSNI-HLEKLVLLEMPHSNIQ-QL-LDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLD 137 (256)
Q Consensus 63 L~~L~ls~n~l~~l-p~~~-~l~~L~~L~L~~n~l~-~l-~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~ 137 (256)
+++|++++|.++.+ |..| .+++|++|++++|... .+ ...+.. +..+..+.++++ ++. ..|.+|+++++|++|+
T Consensus 26 l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~-L~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN-LPNLRILDLGSSKIYF-LHPDAFQGLFHLFELR 103 (844)
T ss_dssp CCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSS-CTTCCEEECTTCCCCE-ECTTSSCSCSSCCCEE
T ss_pred cCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcC-CCCCCEEECCCCcCcc-cCHhHccCCcccCEee
Confidence 99999999999887 4567 9999999999999542 21 000000 000000111111 000 1255555666666666
Q ss_pred ccCCCCcc-cccc--ccCCCCCCEEeeccCcCCccc-CC-C---CCCCcEEeccCcccccccccchhch
Q 043683 138 LQKNNFER-IPES--VIQLSKLGRLCLRYWERLQSL-PK-L---PCKLHELDAHHCTALESLSGLFSSF 198 (256)
Q Consensus 138 l~~n~l~~-lp~~--i~~l~~L~~L~l~~~~~l~~l-p~-~---l~~L~~L~l~~~~~l~~~p~~~~~l 198 (256)
+++|.++. +|.. ++++++|++|++++|. +..+ |. . +++|++|++++|......|..+..+
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 66665552 3432 5566666666666533 2222 21 1 5556666666554444444444443
No 114
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.09 E-value=9.4e-11 Score=102.66 Aligned_cols=133 Identities=18% Similarity=0.224 Sum_probs=74.1
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~ 140 (256)
|++|++++|.+..++. + .+++|++|++++|.+..+.. +.. +..+..+.++++ ++ .++. +..+++|++|++++
T Consensus 179 L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~-~~~L~~L~l~~n~l~--~~~~-~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 179 LYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VAN-MTRLNSLKIGNNKIT--DLSP-LANLSQLTWLEIGT 252 (347)
T ss_dssp CSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGG-CTTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCS
T ss_pred CCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-hhc-CCcCCEEEccCCccC--CCcc-hhcCCCCCEEECCC
Confidence 8889999998888876 6 88889999998888765411 111 111111111111 11 1122 45566666666666
Q ss_pred CCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccchhchhhhhh
Q 043683 141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFEARTQ 203 (256)
Q Consensus 141 n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~ 203 (256)
|.++.++ .+..+++|++|++++| .+..+|.. +++|++|++++|......|..++.+++++.
T Consensus 253 n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 253 NQISDIN-AVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp SCCCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred CccCCCh-hHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 6666553 4556666666666653 34444433 556666666665544444445555444443
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.07 E-value=2.4e-10 Score=107.51 Aligned_cols=126 Identities=21% Similarity=0.292 Sum_probs=85.5
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~ 140 (256)
|++|++++|.++.+|. + . +|++|++++|.++.+... +..+..+.++++ ++ .+|. .+++|++|++++
T Consensus 102 L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~~----l~~L~~L~Ls~N~l~--~lp~---~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 102 LEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPEL----PALLEYINADNNQLT--MLPE---LPTSLEVLSVRN 169 (571)
T ss_dssp CCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCS--CCCC---CCTTCCEEECCS
T ss_pred CCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCCc----CccccEEeCCCCccC--cCCC---cCCCcCEEECCC
Confidence 8888888888888887 6 4 888888888887764221 111111112222 22 2344 467888999998
Q ss_pred CCCccccccccCCCCCCEEeeccCcCCcccCCCCCCC-------cEEeccCcccccccccchhchhhhhhcc
Q 043683 141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKL-------HELDAHHCTALESLSGLFSSFEARTQYF 205 (256)
Q Consensus 141 n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~L-------~~L~l~~~~~l~~~p~~~~~l~~l~~l~ 205 (256)
|+++.+|. +. ++|+.|++++| .++.+|....+| +.|++++|. +..+|..+..++++..+.
T Consensus 170 N~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~ 236 (571)
T 3cvr_A 170 NQLTFLPE-LP--ESLEALDVSTN-LLESLPAVPVRNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTII 236 (571)
T ss_dssp SCCSCCCC-CC--TTCCEEECCSS-CCSSCCCCC--------CCEEEECCSSC-CCCCCGGGGGSCTTEEEE
T ss_pred CCCCCcch-hh--CCCCEEECcCC-CCCchhhHHHhhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEE
Confidence 88888887 65 88999999874 577887743366 889998864 677888887777766543
No 116
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.07 E-value=1.8e-10 Score=105.46 Aligned_cols=59 Identities=29% Similarity=0.392 Sum_probs=39.4
Q ss_pred cccccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCCCCCCcEEeccCcc
Q 043683 123 LPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCT 186 (256)
Q Consensus 123 lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~L~~L~l~~~~ 186 (256)
+| .++.+++|++|++++|+++.+|.. +.+|+.|++++| .+..+|..+++|++|++++|.
T Consensus 230 lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N-~l~~l~~~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 230 LP-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDN-YLTDLPELPQSLTFLDVSENI 288 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC
T ss_pred cc-ccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCC-cccccCcccCcCCEEECcCCc
Confidence 45 366777777777777777777643 367777777763 355666666677777777754
No 117
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.07 E-value=4.6e-11 Score=113.50 Aligned_cols=65 Identities=35% Similarity=0.382 Sum_probs=41.2
Q ss_pred CCCcEEEccCCCCccccccccC-----------------CCCCCEEeeccCcCCcccCCCCCCCcEEeccCccccccccc
Q 043683 131 SSLGKLDLQKNNFERIPESVIQ-----------------LSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCTALESLSG 193 (256)
Q Consensus 131 ~~L~~L~l~~n~l~~lp~~i~~-----------------l~~L~~L~l~~~~~l~~lp~~l~~L~~L~l~~~~~l~~~p~ 193 (256)
++|++|++++|+++.+|..+.. +++|+.|++++| .++.+|..+++|+.|++++| .+..+|.
T Consensus 181 ~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N-~L~~lp~ 258 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGN-RLTSLPM 258 (622)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSCCCC
T ss_pred CCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCC-CCCcCCc
Confidence 5666666666666665543221 256777777763 56667755778888888876 4667776
Q ss_pred chhc
Q 043683 194 LFSS 197 (256)
Q Consensus 194 ~~~~ 197 (256)
.+.+
T Consensus 259 ~~~~ 262 (622)
T 3g06_A 259 LPSG 262 (622)
T ss_dssp CCTT
T ss_pred cccc
Confidence 4333
No 118
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.07 E-value=5e-11 Score=103.50 Aligned_cols=139 Identities=17% Similarity=0.238 Sum_probs=92.4
Q ss_pred eCCCCeeeecChHHHHhh--hhhhhccCCCCCc---cCCc--c-ccCCccEEeCcCCcchhh---HHHHHHhcccCCCCc
Q 043683 45 GMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKS---LPSN--I-HLEKLVLLEMPHSNIQQL---LDSVRGILTRTPNTP 113 (256)
Q Consensus 45 ~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~---lp~~--~-~l~~L~~L~L~~n~l~~l---~~~L~~Ll~~lp~~~ 113 (256)
++++++...+.+..|.++ |++|++++|.+.. +|.. + .+++|++|++++|.++.+ ...+..-+..+..+.
T Consensus 155 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~ 234 (312)
T 1wwl_A 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234 (312)
T ss_dssp EEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEE
T ss_pred EeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEE
Confidence 334444444555556555 8999999988543 2322 2 688999999999988743 222211012222222
Q ss_pred hhhc-cCccccccccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcc
Q 043683 114 LGQH-LNTLVLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCT 186 (256)
Q Consensus 114 l~~~-L~~L~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~ 186 (256)
++++ ++.......+..+++|++|++++|+++.+|..+. ++|++|++++ +.++.+|.. +++|++|++++|+
T Consensus 235 Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSY-NRLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCS-SCCCSCCCTTTSCEEEEEECTTCT
T ss_pred CCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCC-CCCCCChhHhhCCCCCEEeccCCC
Confidence 2322 2221111345668999999999999999998877 8999999998 557777875 8899999999875
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.05 E-value=6.3e-13 Score=108.08 Aligned_cols=107 Identities=14% Similarity=0.193 Sum_probs=86.6
Q ss_pred HHHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCc
Q 043683 58 TFRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLG 134 (256)
Q Consensus 58 ~f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~ 134 (256)
.|..+ |++|++++|.++.+| .+ .+++|++|++++|.++.+ |..++.+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l-------------------------~~~~~~~~~L~ 96 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKI-------------------------ENLDAVADTLE 96 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSC-------------------------SSHHHHHHHCS
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccc-------------------------cchhhcCCcCC
Confidence 67776 999999999998888 77 899999999999988743 55556678899
Q ss_pred EEEccCCCCccccccccCCCCCCEEeeccCcCCcccCC---C--CCCCcEEeccCcccccccc
Q 043683 135 KLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPK---L--PCKLHELDAHHCTALESLS 192 (256)
Q Consensus 135 ~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~---~--l~~L~~L~l~~~~~l~~~p 192 (256)
+|++++|+++.+| .++.+++|++|++++| .+..+|. . +++|++|++++|+.....|
T Consensus 97 ~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 97 ELWISYNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp EEEEEEEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred EEECcCCcCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 9999999999888 6888999999999984 4666654 1 7889999999886544444
No 120
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.03 E-value=7.6e-10 Score=97.08 Aligned_cols=95 Identities=23% Similarity=0.267 Sum_probs=78.1
Q ss_pred hhccCC-CCCccCCcc-ccCCccEEeCcC-CcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCC
Q 043683 66 FHWHGC-PLKSLPSNI-HLEKLVLLEMPH-SNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNN 142 (256)
Q Consensus 66 L~ls~n-~l~~lp~~~-~l~~L~~L~L~~-n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~ 142 (256)
++.+++ .+..+|. + .+++|++|+|++ |.++.+ .|..|+.+++|++|+|++|+
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~------------------------~~~~~~~l~~L~~L~l~~N~ 67 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHL------------------------ELRDLRGLGELRNLTIVKSG 67 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEE------------------------CGGGSCSCCCCSEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCc------------------------ChhHhccccCCCEEECCCCc
Confidence 467777 7999999 8 899999999996 988764 23678899999999999999
Q ss_pred Cccccc-cccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcc
Q 043683 143 FERIPE-SVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCT 186 (256)
Q Consensus 143 l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~ 186 (256)
++.+|+ .|+++++|++|+|++ |.+..+|.. ..+|+.|++.+|.
T Consensus 68 l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 68 LRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred cceeCHHHhcCCcCCCEEeCCC-CccceeCHHHcccCCceEEEeeCCC
Confidence 997764 679999999999998 557888865 2349999998865
No 121
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.01 E-value=4e-10 Score=89.85 Aligned_cols=101 Identities=17% Similarity=0.235 Sum_probs=77.6
Q ss_pred eeCCCCeeeecChHHHHhhhhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCcc
Q 043683 44 LGMSKVKEIHLNPDTFRKMLRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTL 121 (256)
Q Consensus 44 l~l~~l~~~~l~~~~f~~lL~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L 121 (256)
+++++.+...+....+ .-|++|++++|.+..+++ .| .+++|++|+|++|+++.+
T Consensus 17 l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i----------------------- 72 (174)
T 2r9u_A 17 VNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI----------------------- 72 (174)
T ss_dssp EECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-----------------------
T ss_pred EEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-----------------------
Confidence 4555444333332211 229999999999999865 46 899999999999998754
Q ss_pred cccc-ccCCCCCCcEEEccCCCCcccccc-ccCCCCCCEEeeccCcCCcccC
Q 043683 122 VLPE-NIGQLSSLGKLDLQKNNFERIPES-VIQLSKLGRLCLRYWERLQSLP 171 (256)
Q Consensus 122 ~lp~-~~~~l~~L~~L~l~~n~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp 171 (256)
|. .|+.+++|++|++++|+++.+|+. +..+++|++|++++|. +...+
T Consensus 73 --~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~ 121 (174)
T 2r9u_A 73 --PTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCEC 121 (174)
T ss_dssp --CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-BCTTB
T ss_pred --ChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCC-ccccc
Confidence 44 358899999999999999999975 8999999999999854 44433
No 122
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.01 E-value=4.3e-10 Score=89.21 Aligned_cols=79 Identities=19% Similarity=0.288 Sum_probs=69.1
Q ss_pred hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~ 140 (256)
+++|++++|.++.+++. | .+++|++|+|++|+++.+ .+..|..+++|++|++++
T Consensus 32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l------------------------~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL------------------------PAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC------------------------CTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc------------------------ChhhccCCCCCCEEECCC
Confidence 89999999999998554 6 899999999999998764 134468999999999999
Q ss_pred CCCccccc-cccCCCCCCEEeeccCc
Q 043683 141 NNFERIPE-SVIQLSKLGRLCLRYWE 165 (256)
Q Consensus 141 n~l~~lp~-~i~~l~~L~~L~l~~~~ 165 (256)
|+++.+|+ .+..+++|++|++++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 99999986 58999999999999854
No 123
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.00 E-value=5.8e-10 Score=101.91 Aligned_cols=130 Identities=25% Similarity=0.319 Sum_probs=74.6
Q ss_pred hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccC
Q 043683 63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQK 140 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~ 140 (256)
|++|++++|.+..+++ + .+++|++|++++|.++.+.+ +.. +..+..+.++++ ++. ++. ++.+++|++|++++
T Consensus 245 L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~-l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~L~~ 318 (466)
T 1o6v_A 245 LTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAG-LTALTNLELNENQLED--ISP-ISNLKNLTYLTLYF 318 (466)
T ss_dssp CSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTT-CTTCSEEECCSSCCSC--CGG-GGGCTTCSEEECCS
T ss_pred CCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccC-CCccCeEEcCCCcccC--chh-hcCCCCCCEEECcC
Confidence 8888888888887766 6 78888888888888775421 111 111111111111 111 121 45666777777777
Q ss_pred CCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccchhchhhhh
Q 043683 141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFEART 202 (256)
Q Consensus 141 n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~~~l~~l~ 202 (256)
|+++.+++ ++.+++|+.|++++| .+..++.. +++|+.|++++|...+..| +..++.++
T Consensus 319 n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 378 (466)
T 1o6v_A 319 NNISDISP-VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRIT 378 (466)
T ss_dssp SCCSCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCC
T ss_pred CcCCCchh-hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCccCccch--hhcCCCCC
Confidence 76665554 566677777777664 34444443 6667777777665433333 44444444
No 124
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.98 E-value=4.7e-10 Score=102.54 Aligned_cols=72 Identities=19% Similarity=0.324 Sum_probs=38.7
Q ss_pred cCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccchhchhhhh
Q 043683 127 IGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFEART 202 (256)
Q Consensus 127 ~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~~~l~~l~ 202 (256)
++.+++|++|++++|+++.+++ ++.+++|+.|++++|. +..++.. +++|++|++++|. +..+ ..+..+++++
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~ 356 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFYNNK-VSDV-SSLANLTNIN 356 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSC-CSCCGGGGGCTTCCEEECCSSC-CCCC-GGGTTCTTCC
T ss_pred ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCc-CCCchhhccCccCCEeECCCCc-cCCc-hhhccCCCCC
Confidence 4555666666666666665553 5566666666666643 3333322 5666666666653 3333 2344444444
No 125
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.98 E-value=5.4e-10 Score=105.10 Aligned_cols=123 Identities=20% Similarity=0.194 Sum_probs=92.0
Q ss_pred hhhhhccCCCCCccCCccccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccCC
Q 043683 63 LRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQKN 141 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~n 141 (256)
|++|++++|.++.+|. .+++|++|++++|.++.+... +..+..+.++++ ++ .+|. +. ++|++|++++|
T Consensus 122 L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~~----l~~L~~L~Ls~N~L~--~lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 122 LKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPEL----PTSLEVLSVRNNQLT--FLPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp CCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCS--CCCC-CC--TTCCEEECCSS
T ss_pred CCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCCc----CCCcCEEECCCCCCC--Ccch-hh--CCCCEEECcCC
Confidence 8999999999999988 688999999999998764221 111111222222 22 2465 55 89999999999
Q ss_pred CCccccccccCCCCC-------CEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhchhh
Q 043683 142 NFERIPESVIQLSKL-------GRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEA 200 (256)
Q Consensus 142 ~l~~lp~~i~~l~~L-------~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~ 200 (256)
+++.+|. +.. +| +.|++++ |.+..+|.. +++|++|++++|+..+.+|..+..+..
T Consensus 191 ~L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 191 LLESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCSSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CCCchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 9999998 655 77 9999998 568889985 889999999999877888888877655
No 126
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.94 E-value=3.8e-10 Score=98.21 Aligned_cols=148 Identities=15% Similarity=0.167 Sum_probs=97.8
Q ss_pred hHHHHhh----hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh--HHHHHHhcccCCCCchhhc-cCcccccccc
Q 043683 56 PDTFRKM----LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL--LDSVRGILTRTPNTPLGQH-LNTLVLPENI 127 (256)
Q Consensus 56 ~~~f~~l----L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l--~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~ 127 (256)
+..+..+ +++|++++|.+...++.+ .+++|++|++++|.+... ...+.. +..+..+.+.++ +.. ..|..+
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~-~~~L~~L~L~~~~l~~-~~~~~l 138 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQ-CSKLQNLSLEGLRLSD-PIVNTL 138 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTT-BCCCSEEECTTCBCCH-HHHHHH
T ss_pred HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhh-CCCCCEEeCcCcccCH-HHHHHH
Confidence 4455544 888999999988777777 899999999999988642 111222 222222222222 000 235667
Q ss_pred CCCCCCcEEEccCC-CCc--cccccccCCCCCCEEeeccCcCCcc--cCCC---CC-CCcEEeccCcc-cc--cccccch
Q 043683 128 GQLSSLGKLDLQKN-NFE--RIPESVIQLSKLGRLCLRYWERLQS--LPKL---PC-KLHELDAHHCT-AL--ESLSGLF 195 (256)
Q Consensus 128 ~~l~~L~~L~l~~n-~l~--~lp~~i~~l~~L~~L~l~~~~~l~~--lp~~---l~-~L~~L~l~~~~-~l--~~~p~~~ 195 (256)
+.+++|++|++++| .++ .+|..+..+++|++|++++|..+.. ++.. ++ +|++|++++|. .+ ..+|..+
T Consensus 139 ~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~ 218 (336)
T 2ast_B 139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218 (336)
T ss_dssp TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH
Confidence 78888999999887 677 4777788888999999988734543 3443 67 89999998874 23 4566666
Q ss_pred hchhhhhhcc
Q 043683 196 SSFEARTQYF 205 (256)
Q Consensus 196 ~~l~~l~~l~ 205 (256)
..+++++.+.
T Consensus 219 ~~~~~L~~L~ 228 (336)
T 2ast_B 219 RRCPNLVHLD 228 (336)
T ss_dssp HHCTTCSEEE
T ss_pred hhCCCCCEEe
Confidence 6666666543
No 127
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.92 E-value=1.8e-10 Score=100.22 Aligned_cols=139 Identities=14% Similarity=0.171 Sum_probs=90.6
Q ss_pred hhhhhccCCCCC-ccCCcc-ccCCccEEeCcCC-cchhh--HHHHHHhcccCCCCchhhc--cCccccccccCCCC-CCc
Q 043683 63 LRYFHWHGCPLK-SLPSNI-HLEKLVLLEMPHS-NIQQL--LDSVRGILTRTPNTPLGQH--LNTLVLPENIGQLS-SLG 134 (256)
Q Consensus 63 L~~L~ls~n~l~-~lp~~~-~l~~L~~L~L~~n-~l~~l--~~~L~~Ll~~lp~~~l~~~--L~~L~lp~~~~~l~-~L~ 134 (256)
|++|++++|.++ ..|..+ .+++|++|++++| .++.. ...+.. +..+..+.++++ ++.-.++..++.++ +|+
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS-CSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH-CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc-CCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 999999999876 456667 8999999999999 67642 111222 222222222222 11112456677788 999
Q ss_pred EEEccCCC--C--ccccccccCCCCCCEEeeccCcCCc-ccCCC---CCCCcEEeccCccccccccc---chhchhhhhh
Q 043683 135 KLDLQKNN--F--ERIPESVIQLSKLGRLCLRYWERLQ-SLPKL---PCKLHELDAHHCTALESLSG---LFSSFEARTQ 203 (256)
Q Consensus 135 ~L~l~~n~--l--~~lp~~i~~l~~L~~L~l~~~~~l~-~lp~~---l~~L~~L~l~~~~~l~~~p~---~~~~l~~l~~ 203 (256)
+|++++|. + ..+|..+..+++|++|++++|..+. ..+.. +++|++|++++|. ...+. .+.++++++.
T Consensus 199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETLLELGEIPTLKT 276 (336)
T ss_dssp EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGGGGGGGCTTCCE
T ss_pred EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCE
Confidence 99999884 4 4677778889999999999876443 23322 7889999999886 22334 3444555544
Q ss_pred c
Q 043683 204 Y 204 (256)
Q Consensus 204 l 204 (256)
+
T Consensus 277 L 277 (336)
T 2ast_B 277 L 277 (336)
T ss_dssp E
T ss_pred E
Confidence 3
No 128
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.86 E-value=6.2e-10 Score=99.16 Aligned_cols=35 Identities=11% Similarity=0.091 Sum_probs=26.7
Q ss_pred hhhhhccCCCCCc-----cCCcc-ccCCccEEeCcCCcchh
Q 043683 63 LRYFHWHGCPLKS-----LPSNI-HLEKLVLLEMPHSNIQQ 97 (256)
Q Consensus 63 L~~L~ls~n~l~~-----lp~~~-~l~~L~~L~L~~n~l~~ 97 (256)
|++|++++|.++. +|..+ .+++|++|++++|.+..
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 136 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP 136 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCH
Confidence 7888888888765 66666 77888888888888764
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.82 E-value=3.2e-11 Score=97.91 Aligned_cols=104 Identities=15% Similarity=0.279 Sum_probs=83.3
Q ss_pred CCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCCCcccccccc
Q 043683 73 LKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNNFERIPESVI 151 (256)
Q Consensus 73 l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~ 151 (256)
++.+|..+ .+++|++|++++|.++.+ | .++.+++|++|++++|.++.+|..+.
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l-------------------------~-~~~~l~~L~~L~l~~n~l~~l~~~~~ 90 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKI-------------------------S-SLSGMENLRILSLGRNLIKKIENLDA 90 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCC-------------------------C-CHHHHTTCCEEEEEEEEECSCSSHHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCccc-------------------------c-ccccCCCCCEEECCCCCcccccchhh
Confidence 44455578 899999999999998753 5 66788999999999999999998888
Q ss_pred CCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCccccccccc--chhchhhhhhc
Q 043683 152 QLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSG--LFSSFEARTQY 204 (256)
Q Consensus 152 ~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~--~~~~l~~l~~l 204 (256)
.+++|++|++++| .+..+|.. +++|++|++++|. +..+|. .+..+++++.+
T Consensus 91 ~~~~L~~L~L~~N-~l~~l~~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 91 VADTLEELWISYN-QIASLSGIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp HHHHCSEEEEEEE-ECCCHHHHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEE
T ss_pred cCCcCCEEECcCC-cCCcCCccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEE
Confidence 8999999999985 57777754 7899999999875 555554 55566555544
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.75 E-value=6.8e-09 Score=91.40 Aligned_cols=118 Identities=22% Similarity=0.244 Sum_probs=72.5
Q ss_pred hhhhhccC-CCCCccCCc-c-cc-CCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc--cCccccc-cccCCCCCCcE
Q 043683 63 LRYFHWHG-CPLKSLPSN-I-HL-EKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH--LNTLVLP-ENIGQLSSLGK 135 (256)
Q Consensus 63 L~~L~ls~-n~l~~lp~~-~-~l-~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~--L~~L~lp-~~~~~l~~L~~ 135 (256)
+..|++.+ +.+..+|.. | .+ ..+++|++++|+++.+....... ..+..+.+.++ ++ .+| ..|+.+++|++
T Consensus 130 l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~-~~L~~l~l~~~n~l~--~i~~~~f~~l~~L~~ 206 (350)
T 4ay9_X 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLE--ELPNDVFHGASGPVI 206 (350)
T ss_dssp CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT-EEEEEEECTTCTTCC--CCCTTTTTTEECCSE
T ss_pred hhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccc-cchhHHhhccCCccc--CCCHHHhccCcccch
Confidence 44555544 346666654 3 33 35666777777665541111000 00000000000 00 234 35689999999
Q ss_pred EEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCc
Q 043683 136 LDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHC 185 (256)
Q Consensus 136 L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~ 185 (256)
|++++|+++.+|.. .+.+|+.|.+.+++.++.+|.. +++|+.+++.+.
T Consensus 207 LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 207 LDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp EECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred hhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence 99999999999964 4677788888778889999986 899999998753
No 131
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.69 E-value=1.6e-08 Score=88.54 Aligned_cols=79 Identities=22% Similarity=0.208 Sum_probs=67.5
Q ss_pred hhhhhccC-CCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEcc
Q 043683 63 LRYFHWHG-CPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQ 139 (256)
Q Consensus 63 L~~L~ls~-n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~ 139 (256)
|++|+|++ |.++.+|+. | .+++|++|+|++|+|+++ .|..|+.+++|++|+|+
T Consensus 33 L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~------------------------~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV------------------------APDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE------------------------CTTGGGSCSCCCEEECC
T ss_pred eeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee------------------------CHHHhcCCcCCCEEeCC
Confidence 99999996 999999865 6 899999999999999864 35678999999999999
Q ss_pred CCCCccccccccCCCCCCEEeeccCc
Q 043683 140 KNNFERIPESVIQLSKLGRLCLRYWE 165 (256)
Q Consensus 140 ~n~l~~lp~~i~~l~~L~~L~l~~~~ 165 (256)
+|+|+.+|+.+....+|+.|++++|.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCccceeCHHHcccCCceEEEeeCCC
Confidence 99999999765444449999999854
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.58 E-value=4.2e-08 Score=86.64 Aligned_cols=55 Identities=16% Similarity=0.042 Sum_probs=28.7
Q ss_pred CCCcEEEccCCCCcc-----ccccccCC-CCCCEEeeccCcCCcccCC--------CCCCCcEEeccCcc
Q 043683 131 SSLGKLDLQKNNFER-----IPESVIQL-SKLGRLCLRYWERLQSLPK--------LPCKLHELDAHHCT 186 (256)
Q Consensus 131 ~~L~~L~l~~n~l~~-----lp~~i~~l-~~L~~L~l~~~~~l~~lp~--------~l~~L~~L~l~~~~ 186 (256)
++|++|++++|.++. ++..+..+ ++|++|++++| .++..+. .+++|++|++++|.
T Consensus 196 ~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 356666666666554 44444442 36666666653 2333322 14556666666554
No 133
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.58 E-value=4.5e-08 Score=87.01 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=25.3
Q ss_pred hhhhhccCCCCC--ccC---Ccc-ccCCccEEeCcCCcch
Q 043683 63 LRYFHWHGCPLK--SLP---SNI-HLEKLVLLEMPHSNIQ 96 (256)
Q Consensus 63 L~~L~ls~n~l~--~lp---~~~-~l~~L~~L~L~~n~l~ 96 (256)
|++|++++|.++ .+| ..+ .+++|++|++++|.++
T Consensus 161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 200 (386)
T 2ca6_A 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR 200 (386)
T ss_dssp CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCC
T ss_pred CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 788888888875 344 345 6778888888888876
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.57 E-value=8.4e-09 Score=91.17 Aligned_cols=55 Identities=13% Similarity=0.079 Sum_probs=34.5
Q ss_pred EeeCCCCeeeecChHHHHhh-------hhhhhccCCCCCccCCc-c-----c-cCCccEEeCcCCcchh
Q 043683 43 CLGMSKVKEIHLNPDTFRKM-------LRYFHWHGCPLKSLPSN-I-----H-LEKLVLLEMPHSNIQQ 97 (256)
Q Consensus 43 ~l~l~~l~~~~l~~~~f~~l-------L~~L~ls~n~l~~lp~~-~-----~-l~~L~~L~L~~n~l~~ 97 (256)
.++++++.........+... |++|++++|.++..+.. + . .++|++|++++|.++.
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 34555555444444444332 78888888887776643 2 1 3588888888888773
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.46 E-value=4.5e-08 Score=88.58 Aligned_cols=123 Identities=20% Similarity=0.278 Sum_probs=70.8
Q ss_pred hhhhhccCCCCC-----ccCCcc-ccCCccEEeCcCCcchhh-HHHHHHhcc----cCCCCchhhc-cCcc---cccccc
Q 043683 63 LRYFHWHGCPLK-----SLPSNI-HLEKLVLLEMPHSNIQQL-LDSVRGILT----RTPNTPLGQH-LNTL---VLPENI 127 (256)
Q Consensus 63 L~~L~ls~n~l~-----~lp~~~-~l~~L~~L~L~~n~l~~l-~~~L~~Ll~----~lp~~~l~~~-L~~L---~lp~~~ 127 (256)
|++|++++|.++ .++..+ .+++|++|++++|.+... ...+...+. .+..+.++++ ++.. .+|..+
T Consensus 30 L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l 109 (461)
T 1z7x_W 30 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL 109 (461)
T ss_dssp CSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHT
T ss_pred ccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHH
Confidence 778888887776 345555 677888888888877653 222211011 1222222222 1111 236667
Q ss_pred CCCCCCcEEEccCCCCccc-cccc-----cCCCCCCEEeeccCcCCcc-----cCCC---CCCCcEEeccCcc
Q 043683 128 GQLSSLGKLDLQKNNFERI-PESV-----IQLSKLGRLCLRYWERLQS-----LPKL---PCKLHELDAHHCT 186 (256)
Q Consensus 128 ~~l~~L~~L~l~~n~l~~l-p~~i-----~~l~~L~~L~l~~~~~l~~-----lp~~---l~~L~~L~l~~~~ 186 (256)
..+++|++|++++|.++.. +..+ ...++|++|++++|. +.. ++.. +++|++|++++|.
T Consensus 110 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 110 RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 7788888888888877632 2222 224578888888754 332 2222 5778888888766
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.45 E-value=2.7e-08 Score=90.05 Aligned_cols=72 Identities=17% Similarity=0.125 Sum_probs=38.2
Q ss_pred CCCcEEEccCCCCcc-----ccccccCCCCCCEEeeccCcCCcccC-C--------CCCCCcEEeccCccccc----ccc
Q 043683 131 SSLGKLDLQKNNFER-----IPESVIQLSKLGRLCLRYWERLQSLP-K--------LPCKLHELDAHHCTALE----SLS 192 (256)
Q Consensus 131 ~~L~~L~l~~n~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~lp-~--------~l~~L~~L~l~~~~~l~----~~p 192 (256)
++|++|++++|.++. ++..+..+++|++|++++|. ++... . ..++|++|++++|.... .+|
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 391 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence 466666666666653 34455566666666666642 32211 0 02366666666654322 455
Q ss_pred cchhchhhhhh
Q 043683 193 GLFSSFEARTQ 203 (256)
Q Consensus 193 ~~~~~l~~l~~ 203 (256)
..+..+++++.
T Consensus 392 ~~l~~~~~L~~ 402 (461)
T 1z7x_W 392 ATLLANHSLRE 402 (461)
T ss_dssp HHHHHCCCCCE
T ss_pred HHHHhCCCccE
Confidence 55555444443
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.38 E-value=3.1e-07 Score=79.92 Aligned_cols=147 Identities=16% Similarity=0.212 Sum_probs=94.7
Q ss_pred ecChHHHHh--------h--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhh----HHHHHHh-----------
Q 043683 53 HLNPDTFRK--------M--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQL----LDSVRGI----------- 105 (256)
Q Consensus 53 ~l~~~~f~~--------l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l----~~~L~~L----------- 105 (256)
.+...+|.+ + |+.+++.+ .++.+++. | ++++|+.+++++|.+..+ |.+...+
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~ 161 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY 161 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH
T ss_pred ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh
Confidence 567788888 6 99999998 88999877 5 899999999999987544 2111111
Q ss_pred --cccCCCCchhhc--cC--------------------------cccccccc---------CCCCCCcEEEccCCCCccc
Q 043683 106 --LTRTPNTPLGQH--LN--------------------------TLVLPENI---------GQLSSLGKLDLQKNNFERI 146 (256)
Q Consensus 106 --l~~lp~~~l~~~--L~--------------------------~L~lp~~~---------~~l~~L~~L~l~~n~l~~l 146 (256)
...+.+..+.+| |+ .+.+...+ ..+++|++++++.|+++.|
T Consensus 162 ~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I 241 (329)
T 3sb4_A 162 RFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTI 241 (329)
T ss_dssp HTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEE
T ss_pred hccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCccee
Confidence 011111111111 11 00000000 1267899999998889988
Q ss_pred cc-cccCCCCCCEEeeccCcCCcccCCC----CCCCc-EEeccCcccccccc-cchhchhhhhhc
Q 043683 147 PE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLH-ELDAHHCTALESLS-GLFSSFEARTQY 204 (256)
Q Consensus 147 p~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~-~L~l~~~~~l~~~p-~~~~~l~~l~~l 204 (256)
|+ .|.++.+|+.+++.++ +..++.. +.+|+ .+++.. .+..++ ..|..+.+|+.+
T Consensus 242 ~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 242 PDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEE
T ss_pred cHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEE
Confidence 85 6888999999999873 7788775 67788 888876 455554 466666665544
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.28 E-value=1.1e-06 Score=76.49 Aligned_cols=76 Identities=18% Similarity=0.110 Sum_probs=60.1
Q ss_pred cccCCCCCCcEEEccCCCCccccc-cccCCCCCC-EEeeccCcCCcccCCC----CCCCcEEeccCccccccccc-chhc
Q 043683 125 ENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLG-RLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSG-LFSS 197 (256)
Q Consensus 125 ~~~~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~-~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~-~~~~ 197 (256)
..|.++++|+.+++..| ++.|++ +|.++.+|+ .+++.+ .+..++.. +++|+.+++..+ .+..++. .|.+
T Consensus 244 ~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~ 319 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGN 319 (329)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTCT
T ss_pred hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccchhhhcC
Confidence 35788999999999987 888884 789999999 999986 57788765 789999999764 4666655 6666
Q ss_pred hhhhhhc
Q 043683 198 FEARTQY 204 (256)
Q Consensus 198 l~~l~~l 204 (256)
+.+|+.+
T Consensus 320 ~~~L~~l 326 (329)
T 3sb4_A 320 GVPSKLI 326 (329)
T ss_dssp TCCCCEE
T ss_pred Ccchhhh
Confidence 6666544
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.15 E-value=3.7e-07 Score=81.33 Aligned_cols=123 Identities=15% Similarity=0.186 Sum_probs=68.2
Q ss_pred hhhhhccCCCCCccC-Ccc--ccCCccEEeCcCCcchhh-HHHHHHhc----ccCCCCchhhc-cCcc---ccccccCCC
Q 043683 63 LRYFHWHGCPLKSLP-SNI--HLEKLVLLEMPHSNIQQL-LDSVRGIL----TRTPNTPLGQH-LNTL---VLPENIGQL 130 (256)
Q Consensus 63 L~~L~ls~n~l~~lp-~~~--~l~~L~~L~L~~n~l~~l-~~~L~~Ll----~~lp~~~l~~~-L~~L---~lp~~~~~l 130 (256)
|++|++++|.++... ..+ .+++|++|+|++|.++.. ...+...+ ..+..+.+++| ++.. .++..+...
T Consensus 103 L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~ 182 (372)
T 3un9_A 103 LDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGN 182 (372)
T ss_dssp EEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTC
T ss_pred ceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcC
Confidence 666777777665321 112 456677777777776543 11111111 11222222222 1110 234445667
Q ss_pred CCCcEEEccCCCCcc-----ccccccCCCCCCEEeeccCcCCccc-----CCC---CCCCcEEeccCcc
Q 043683 131 SSLGKLDLQKNNFER-----IPESVIQLSKLGRLCLRYWERLQSL-----PKL---PCKLHELDAHHCT 186 (256)
Q Consensus 131 ~~L~~L~l~~n~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~l-----p~~---l~~L~~L~l~~~~ 186 (256)
++|++|+|++|.++. ++..+...++|+.|++++|. ++.. +.. .++|++|++++|.
T Consensus 183 ~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 183 TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 788888888888763 34566777788888888754 4432 111 4778888888875
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.15 E-value=1.2e-06 Score=81.72 Aligned_cols=60 Identities=22% Similarity=0.087 Sum_probs=26.2
Q ss_pred ccccCCCCCCcEEEccCCCCc--cccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEecc
Q 043683 124 PENIGQLSSLGKLDLQKNNFE--RIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAH 183 (256)
Q Consensus 124 p~~~~~l~~L~~L~l~~n~l~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~ 183 (256)
|..+..+++|++|++++|.++ .++..+..+++|+.|+++++..-..++.. +++|++|+++
T Consensus 286 ~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 333444455555555544443 12223345555555555422111111111 4556666666
No 141
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.86 E-value=1.5e-05 Score=67.77 Aligned_cols=63 Identities=25% Similarity=0.240 Sum_probs=34.1
Q ss_pred CCCCCcEEEccCCCCcccc---ccccCCCCCCEEeeccCcCCcccCCC--CC--CCcEEeccCcccccccc
Q 043683 129 QLSSLGKLDLQKNNFERIP---ESVIQLSKLGRLCLRYWERLQSLPKL--PC--KLHELDAHHCTALESLS 192 (256)
Q Consensus 129 ~l~~L~~L~l~~n~l~~lp---~~i~~l~~L~~L~l~~~~~l~~lp~~--l~--~L~~L~l~~~~~l~~~p 192 (256)
++++|++|+|++|+++.++ ..+..+++|+.|+|++ |.+..+... +. +|+.|++++|+....+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccCCcceEEccCCcCccccC
Confidence 3455666666666665433 3445666666666665 334444322 22 56666666665444444
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.82 E-value=7.3e-06 Score=76.34 Aligned_cols=101 Identities=15% Similarity=0.117 Sum_probs=49.4
Q ss_pred hhhhhccCCC-CC--ccCCcc-ccCCccEEeCcCCcchhh-HHHHHHh---cccCCCCchhhc-cCcc---ccccccCCC
Q 043683 63 LRYFHWHGCP-LK--SLPSNI-HLEKLVLLEMPHSNIQQL-LDSVRGI---LTRTPNTPLGQH-LNTL---VLPENIGQL 130 (256)
Q Consensus 63 L~~L~ls~n~-l~--~lp~~~-~l~~L~~L~L~~n~l~~l-~~~L~~L---l~~lp~~~l~~~-L~~L---~lp~~~~~l 130 (256)
|++|++++|. +. .++..+ .+++|++|++++|.+... ...+..+ +..+..+.+..+ ++.. .++..+..+
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 7777777665 22 122223 567777777777765322 0001111 111111111111 0000 123334456
Q ss_pred CCCcEEEccCCCCccccccccCCCCCCEEeecc
Q 043683 131 SSLGKLDLQKNNFERIPESVIQLSKLGRLCLRY 163 (256)
Q Consensus 131 ~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~ 163 (256)
++|++|++++|.+..+|..+..+++|++|+++.
T Consensus 220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECB
T ss_pred CCCcEEeccCccHHHHHHHHhhhhHHHhhcccc
Confidence 677777777766666666666666666666653
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.76 E-value=1.1e-05 Score=71.69 Aligned_cols=102 Identities=15% Similarity=0.174 Sum_probs=67.0
Q ss_pred hhhhhccCCCCCccCCc-----c--ccCCccEEeCcCCcchhh-HHH----HHHhcccCCCCchhhc-cCcc---ccccc
Q 043683 63 LRYFHWHGCPLKSLPSN-----I--HLEKLVLLEMPHSNIQQL-LDS----VRGILTRTPNTPLGQH-LNTL---VLPEN 126 (256)
Q Consensus 63 L~~L~ls~n~l~~lp~~-----~--~l~~L~~L~L~~n~l~~l-~~~----L~~Ll~~lp~~~l~~~-L~~L---~lp~~ 126 (256)
|++|++++|.++..... + ..++|++|+|++|.++.. ... +.. ...+..+.++++ +... .++..
T Consensus 128 L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~-~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG-NTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT-CSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred ccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc-CCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 88899999988654321 1 247899999999998753 122 222 223333333333 1111 23555
Q ss_pred cCCCCCCcEEEccCCCCcc-----ccccccCCCCCCEEeeccCc
Q 043683 127 IGQLSSLGKLDLQKNNFER-----IPESVIQLSKLGRLCLRYWE 165 (256)
Q Consensus 127 ~~~l~~L~~L~l~~n~l~~-----lp~~i~~l~~L~~L~l~~~~ 165 (256)
+...++|++|++++|.++. ++..+...++|++|++++|.
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 6777899999999999974 44566678999999999864
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.75 E-value=2.5e-06 Score=79.41 Aligned_cols=31 Identities=10% Similarity=0.087 Sum_probs=15.0
Q ss_pred hhhhhccCCCCCcc-CCcc--ccCCccEEeCcCC
Q 043683 63 LRYFHWHGCPLKSL-PSNI--HLEKLVLLEMPHS 93 (256)
Q Consensus 63 L~~L~ls~n~l~~l-p~~~--~l~~L~~L~L~~n 93 (256)
|++|++++|.++.. +..+ .+++|++|++++|
T Consensus 107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 55555555554321 1222 3455556655555
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.73 E-value=3.2e-05 Score=69.42 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=22.7
Q ss_pred cChHHHHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcC
Q 043683 54 LNPDTFRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPH 92 (256)
Q Consensus 54 l~~~~f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~ 92 (256)
+...+|.++ |+.+++++|.+..+|... ...+|+.+.+..
T Consensus 171 I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~ 212 (401)
T 4fdw_A 171 LKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV 212 (401)
T ss_dssp ECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT
T ss_pred ehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC
Confidence 444455554 666666666666666554 445666666653
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.54 E-value=3.4e-05 Score=61.61 Aligned_cols=102 Identities=11% Similarity=0.110 Sum_probs=66.8
Q ss_pred hhhhhccCC-CCCc-----cCCcc-ccCCccEEeCcCCcchhh-HHHHHHhcccCCCCchhhccCccccccccCCCCCCc
Q 043683 63 LRYFHWHGC-PLKS-----LPSNI-HLEKLVLLEMPHSNIQQL-LDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLG 134 (256)
Q Consensus 63 L~~L~ls~n-~l~~-----lp~~~-~l~~L~~L~L~~n~l~~l-~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~ 134 (256)
|++|++++| .++. +...+ ..++|++|+|++|.+... ...+ ...+...++|+
T Consensus 38 L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l---------------------~~~L~~n~~L~ 96 (185)
T 1io0_A 38 LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL---------------------AEMLKVNNTLK 96 (185)
T ss_dssp CCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH---------------------HHHHHHCSSCC
T ss_pred CCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHH---------------------HHHHHhCCCcC
Confidence 777888877 6654 33333 467889999999988642 1111 12223446788
Q ss_pred EEEccCCCCcc-----ccccccCCCCCCEEee--ccCcCCcc-----cCCC---CCCCcEEeccCcc
Q 043683 135 KLDLQKNNFER-----IPESVIQLSKLGRLCL--RYWERLQS-----LPKL---PCKLHELDAHHCT 186 (256)
Q Consensus 135 ~L~l~~n~l~~-----lp~~i~~l~~L~~L~l--~~~~~l~~-----lp~~---l~~L~~L~l~~~~ 186 (256)
+|+|++|.+.. +...+...++|++|++ ++| .++. +... .++|++|++++|.
T Consensus 97 ~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 97 SLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp EEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred EEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 99999988874 4567777888999999 553 3433 1111 4678999988764
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.46 E-value=9.3e-05 Score=62.80 Aligned_cols=58 Identities=21% Similarity=0.194 Sum_probs=37.1
Q ss_pred cccccCCCCCCcEEEccCCCCccccccccCCC--CCCEEeeccCcCCcccCCC----------CCCCcEEe
Q 043683 123 LPENIGQLSSLGKLDLQKNNFERIPESVIQLS--KLGRLCLRYWERLQSLPKL----------PCKLHELD 181 (256)
Q Consensus 123 lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~--~L~~L~l~~~~~l~~lp~~----------l~~L~~L~ 181 (256)
+|..++.+++|+.|+|++|+++.+. .+..+. +|++|++++|+..+.+|.. +++|+.||
T Consensus 188 l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 188 MSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred chhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 4555667777888888877777663 344444 7777777776654445521 66677665
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.46 E-value=0.00013 Score=65.50 Aligned_cols=46 Identities=13% Similarity=0.201 Sum_probs=33.7
Q ss_pred eecChHHHHhh-hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhh
Q 043683 52 IHLNPDTFRKM-LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQL 98 (256)
Q Consensus 52 ~~l~~~~f~~l-L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l 98 (256)
..+...+|.+. |+.+.+.+ .+..++.. | ++.+|+.+++++|.++.+
T Consensus 147 ~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I 195 (401)
T 4fdw_A 147 KSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKL 195 (401)
T ss_dssp CEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEE
T ss_pred cEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEe
Confidence 34555666665 77777764 67777765 5 889999999999887765
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.35 E-value=0.0001 Score=58.57 Aligned_cols=92 Identities=17% Similarity=0.158 Sum_probs=58.2
Q ss_pred ccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC-CCcccc-cccc
Q 043683 75 SLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN-NFERIP-ESVI 151 (256)
Q Consensus 75 ~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n-~l~~lp-~~i~ 151 (256)
.+|... .-.+|++||++++.++.. ++ ..+..+++|+.|+|+++ .++.-- ..+.
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~--GL----------------------~~L~~~~~L~~L~L~~C~~ItD~gL~~L~ 107 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSI--GF----------------------DHMEGLQYVEKIRLCKCHYIEDGCLERLS 107 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGG--GG----------------------GGGTTCSCCCEEEEESCTTCCHHHHHHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHH--HH----------------------HHhcCCCCCCEEEeCCCCccCHHHHHHHH
Confidence 455544 445788888888877542 11 12367788888888844 566211 2344
Q ss_pred CC----CCCCEEeeccCcCCcc--cCCC--CCCCcEEeccCcccccc
Q 043683 152 QL----SKLGRLCLRYWERLQS--LPKL--PCKLHELDAHHCTALES 190 (256)
Q Consensus 152 ~l----~~L~~L~l~~~~~l~~--lp~~--l~~L~~L~l~~~~~l~~ 190 (256)
.+ ++|++|++++|..++. +... +++|++|++++|+.+..
T Consensus 108 ~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 108 QLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred hcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 43 4688899988876543 1111 67888999988876553
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.29 E-value=0.00017 Score=57.46 Aligned_cols=83 Identities=17% Similarity=0.188 Sum_probs=61.9
Q ss_pred hhhhhccCCCCCc-----cCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEE
Q 043683 63 LRYFHWHGCPLKS-----LPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKL 136 (256)
Q Consensus 63 L~~L~ls~n~l~~-----lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L 136 (256)
|++|++++|.++. +...+ ..++|++|+|++|.+... +... +...+...++|++|
T Consensus 67 L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~--g~~~------------------l~~~L~~n~~L~~L 126 (185)
T 1io0_A 67 VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS--GILA------------------LVEALQSNTSLIEL 126 (185)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH--HHHH------------------HHHGGGGCSSCCEE
T ss_pred cCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH--HHHH------------------HHHHHHhCCCceEE
Confidence 9999999999875 33344 568999999999999753 1111 13344566789999
Q ss_pred Ec--cCCCCcc-----ccccccCCCCCCEEeeccCc
Q 043683 137 DL--QKNNFER-----IPESVIQLSKLGRLCLRYWE 165 (256)
Q Consensus 137 ~l--~~n~l~~-----lp~~i~~l~~L~~L~l~~~~ 165 (256)
++ ++|.+.. +.+.+...++|++|++++|.
T Consensus 127 ~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 127 RIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp ECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred EecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 99 8899873 45566777999999999854
No 151
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.25 E-value=2.2e-05 Score=73.00 Aligned_cols=62 Identities=26% Similarity=0.236 Sum_probs=40.1
Q ss_pred cccccCCCCCCcEEEccCCCCcc--ccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccC
Q 043683 123 LPENIGQLSSLGKLDLQKNNFER--IPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHH 184 (256)
Q Consensus 123 lp~~~~~l~~L~~L~l~~n~l~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~ 184 (256)
+|..+..+++|++|++++|.++. ++..+..+++|+.|++++|..-..++.. +++|++|++.+
T Consensus 281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEec
Confidence 34444467888999998877762 3344668888999998876211122221 67888888844
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.88 E-value=0.00036 Score=55.41 Aligned_cols=83 Identities=12% Similarity=0.155 Sum_probs=58.7
Q ss_pred hhhhhccCCCCCccC-Ccc-ccCCccEEeCcCCc-chhhHHHHHHhcccCCCCchhhccCccccccccCCC----CCCcE
Q 043683 63 LRYFHWHGCPLKSLP-SNI-HLEKLVLLEMPHSN-IQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQL----SSLGK 135 (256)
Q Consensus 63 L~~L~ls~n~l~~lp-~~~-~l~~L~~L~L~~n~-l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l----~~L~~ 135 (256)
|+.||++++.++..- ..+ .+++|++|+|++|. ++.- ++.. ++.+ ++|++
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~--gL~~----------------------L~~~~~~~~~L~~ 118 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG--CLER----------------------LSQLENLQKSMLE 118 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH--HHHH----------------------HHTCHHHHHHCCE
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH--HHHH----------------------HHhcccccCCCCE
Confidence 888999998876532 224 78999999999994 6542 1111 1222 36999
Q ss_pred EEcc-CCCCcccc-ccccCCCCCCEEeeccCcCCcc
Q 043683 136 LDLQ-KNNFERIP-ESVIQLSKLGRLCLRYWERLQS 169 (256)
Q Consensus 136 L~l~-~n~l~~lp-~~i~~l~~L~~L~l~~~~~l~~ 169 (256)
|+++ |.+++.-- ..+..+++|+.|++++|..++.
T Consensus 119 L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 119 MEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp EEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred EEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 9999 55687321 3567899999999999987654
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.74 E-value=0.00081 Score=59.45 Aligned_cols=58 Identities=17% Similarity=0.136 Sum_probs=30.9
Q ss_pred CCCCCcEEEccC--CC------Cccccccc--cCCCCCCEEeeccCcCCcc----cC--CCCCCCcEEeccCcc
Q 043683 129 QLSSLGKLDLQK--NN------FERIPESV--IQLSKLGRLCLRYWERLQS----LP--KLPCKLHELDAHHCT 186 (256)
Q Consensus 129 ~l~~L~~L~l~~--n~------l~~lp~~i--~~l~~L~~L~l~~~~~l~~----lp--~~l~~L~~L~l~~~~ 186 (256)
.+++|+.|+|+. |. +..+...+ +.+++|+.|++.+|..... +- ..+++|++|+++.|.
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 567777777752 11 22222222 2467788888876542211 11 115678888887654
No 154
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.10 E-value=0.0056 Score=45.84 Aligned_cols=55 Identities=24% Similarity=0.316 Sum_probs=37.7
Q ss_pred hhhccCCCCC--ccCCccccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCC
Q 043683 65 YFHWHGCPLK--SLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNN 142 (256)
Q Consensus 65 ~L~ls~n~l~--~lp~~~~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~ 142 (256)
+++.+++.++ .+|..+ ..+|++|+|++|+|+.+ | +..|..+++|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l-----------~-------------~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTAL-----------P-------------PGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSC-----------C-------------TTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCcc-----------C-------------hhhhhhccccCEEEecCCC
Confidence 3466777777 788765 34688888888887653 1 2335667788888888876
Q ss_pred Cc
Q 043683 143 FE 144 (256)
Q Consensus 143 l~ 144 (256)
+.
T Consensus 67 ~~ 68 (130)
T 3rfe_A 67 WR 68 (130)
T ss_dssp CB
T ss_pred ee
Confidence 54
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.53 E-value=0.02 Score=42.72 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=25.2
Q ss_pred CCCcEEEccCCCCccccc-cccCCCCCCEEeeccCc
Q 043683 131 SSLGKLDLQKNNFERIPE-SVIQLSKLGRLCLRYWE 165 (256)
Q Consensus 131 ~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~ 165 (256)
.+|++|+|++|+|+.+|. .+..+.+|+.|+|++|+
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 357788888888887774 45677777777777643
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=94.86 E-value=0.03 Score=49.24 Aligned_cols=59 Identities=19% Similarity=0.216 Sum_probs=39.2
Q ss_pred CCCCcEEEccCCCCcc-cccccc--CCCCCCEEeeccC--cC-----Ccc---c-CCC-CCCCcEEeccCcccc
Q 043683 130 LSSLGKLDLQKNNFER-IPESVI--QLSKLGRLCLRYW--ER-----LQS---L-PKL-PCKLHELDAHHCTAL 188 (256)
Q Consensus 130 l~~L~~L~l~~n~l~~-lp~~i~--~l~~L~~L~l~~~--~~-----l~~---l-p~~-l~~L~~L~l~~~~~l 188 (256)
+++|+.|++..+.+.. .-..+. .+++|+.|+|+.+ +. +.. + ... +++|++|++.+|...
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~ 265 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ 265 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCc
Confidence 7899999999887752 222343 7899999998531 11 111 1 111 689999999987644
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.80 E-value=0.081 Score=46.54 Aligned_cols=54 Identities=20% Similarity=0.184 Sum_probs=28.4
Q ss_pred cCCCCCCcEEEccCCCCcccc-ccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEecc
Q 043683 127 IGQLSSLGKLDLQKNNFERIP-ESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAH 183 (256)
Q Consensus 127 ~~~l~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~ 183 (256)
+..+.+|+.+.+..+ ++.++ .++.++.+|+.+++.. .+..++.. +.+|+.+++.
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEEC
Confidence 445556666655432 55554 3455666666666642 24455443 4556665554
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.79 E-value=0.18 Score=44.23 Aligned_cols=111 Identities=14% Similarity=0.231 Sum_probs=64.2
Q ss_pred eeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhh----HHHHHHh--------cccCCCCc
Q 043683 50 KEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQL----LDSVRGI--------LTRTPNTP 113 (256)
Q Consensus 50 ~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l----~~~L~~L--------l~~lp~~~ 113 (256)
.+..+...+|.+. |+.+.+.. .++.++.. | ++++|+.+++..+ ++.+ |.+...| +..+..-.
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~a 135 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEA 135 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTT
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeeccee
Confidence 4667888899887 88888864 48888766 5 7899999998765 3322 3222222 11222211
Q ss_pred hhhc-cCcc-------cc-ccccCCCCCCcEEEccCCCCcccc-ccccCCCCCCEEeecc
Q 043683 114 LGQH-LNTL-------VL-PENIGQLSSLGKLDLQKNNFERIP-ESVIQLSKLGRLCLRY 163 (256)
Q Consensus 114 l~~~-L~~L-------~l-p~~~~~l~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~ 163 (256)
+.++ +... .+ ..+|.++.+|+.+.+..+ +..++ ..+.++.+|+.+.+..
T Consensus 136 F~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp TTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred eecccccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC
Confidence 2222 1111 11 234566777777777643 34455 3566677777766653
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.44 E-value=0.33 Score=42.55 Aligned_cols=55 Identities=15% Similarity=0.285 Sum_probs=27.1
Q ss_pred cCCCCCCcEEEccCCCCcccc-ccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccC
Q 043683 127 IGQLSSLGKLDLQKNNFERIP-ESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHH 184 (256)
Q Consensus 127 ~~~l~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~ 184 (256)
|.++.+|+.+++..+ ++.|. .+|.++.+|+.+.+.. .+..+... ..+|+.+++.+
T Consensus 307 F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 307 FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 445555555555432 44444 2455555666555542 14444432 44555555543
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.60 E-value=0.2 Score=43.57 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=30.8
Q ss_pred cCCCCCCcEEEccCCCCcccc-ccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEec
Q 043683 127 IGQLSSLGKLDLQKNNFERIP-ESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDA 182 (256)
Q Consensus 127 ~~~l~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l 182 (256)
|.++.+|+.+.+..+.++.|+ .+|.++.+|+.+.+.. .++.+... ..+|+.+.+
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 455666676666666666665 3566666676666653 24445443 344554444
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.60 E-value=0.5 Score=37.79 Aligned_cols=102 Identities=12% Similarity=0.095 Sum_probs=56.9
Q ss_pred hhhhhccCC-CCCc-----cCCcc-ccCCccEEeCcCCcchhh-HHHHHHhcccCCCCchhhccCccccccccCCCCCCc
Q 043683 63 LRYFHWHGC-PLKS-----LPSNI-HLEKLVLLEMPHSNIQQL-LDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLG 134 (256)
Q Consensus 63 L~~L~ls~n-~l~~-----lp~~~-~l~~L~~L~L~~n~l~~l-~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~ 134 (256)
|+.|+|++| .++. +-..+ .-+.|+.|+|++|.+... ...+ -+.+..=+.|+
T Consensus 43 L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~al---------------------A~aL~~N~tL~ 101 (197)
T 1pgv_A 43 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGL---------------------IELIETSPSLR 101 (197)
T ss_dssp CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTH---------------------HHHHHHCSSCC
T ss_pred ccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHH---------------------HHHHhcCCccC
Confidence 666666664 4543 22222 346788888888887643 0001 11122235688
Q ss_pred EEEccCCCCcc-----ccccccCCCCCCEEeeccCc--CCcc-----cCCC---CCCCcEEeccCc
Q 043683 135 KLDLQKNNFER-----IPESVIQLSKLGRLCLRYWE--RLQS-----LPKL---PCKLHELDAHHC 185 (256)
Q Consensus 135 ~L~l~~n~l~~-----lp~~i~~l~~L~~L~l~~~~--~l~~-----lp~~---l~~L~~L~l~~~ 185 (256)
+|+|+.|.|.. |-+.+..-+.|++|+++++. .++. +-.. -++|+.|+++.+
T Consensus 102 ~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 102 VLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp EEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred eEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 88888888762 33455556678888887532 2221 1111 357888888754
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=88.89 E-value=0.58 Score=40.95 Aligned_cols=98 Identities=14% Similarity=0.270 Sum_probs=60.0
Q ss_pred ecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc--cCccccc--
Q 043683 53 HLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH--LNTLVLP-- 124 (256)
Q Consensus 53 ~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~--L~~L~lp-- 124 (256)
.+...+|.+. |+.+.+..+ ...++.. | +..+|+.+.+..+ + +.+++-.+.+| |+++.+|
T Consensus 255 ~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~~-i-----------~~I~~~aF~~c~~L~~i~lp~~ 321 (394)
T 4gt6_A 255 RIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSSR-I-----------TELPESVFAGCISLKSIDIPEG 321 (394)
T ss_dssp EECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-C-----------CEECTTTTTTCTTCCEEECCTT
T ss_pred EcccceeeecccccEEecccc-cceecCcccccccccccccCCCc-c-----------cccCceeecCCCCcCEEEeCCc
Confidence 4555666665 666555433 2334433 3 5666777666532 2 22333333333 4444333
Q ss_pred ------cccCCCCCCcEEEccCCCCcccc-ccccCCCCCCEEeeccC
Q 043683 125 ------ENIGQLSSLGKLDLQKNNFERIP-ESVIQLSKLGRLCLRYW 164 (256)
Q Consensus 125 ------~~~~~l~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~~ 164 (256)
.+|.++.+|+.+.+.. .++.|. .+|.++.+|+.+++.++
T Consensus 322 v~~I~~~aF~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 322 ITQILDDAFAGCEQLERIAIPS-SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred ccEehHhHhhCCCCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCc
Confidence 3467889999999975 478887 47899999999999874
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.11 E-value=0.47 Score=37.94 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=16.2
Q ss_pred CCCcEEEccCCCCcc-----ccccccCCCCCCEEeecc
Q 043683 131 SSLGKLDLQKNNFER-----IPESVIQLSKLGRLCLRY 163 (256)
Q Consensus 131 ~~L~~L~l~~n~l~~-----lp~~i~~l~~L~~L~l~~ 163 (256)
+.|+.|+|++|++.. |-+.+..-+.|+.|+|+.
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC
Confidence 445555555555541 222333445555555554
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=86.38 E-value=0.43 Score=41.35 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=30.2
Q ss_pred cccCCCCCCcEEEccCCCCcccc-ccccCCCCCCEEeecc
Q 043683 125 ENIGQLSSLGKLDLQKNNFERIP-ESVIQLSKLGRLCLRY 163 (256)
Q Consensus 125 ~~~~~l~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~ 163 (256)
.+|.++.+|+.+++..+ ++.|. .+|.++.+|+.+.+..
T Consensus 304 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 304 RVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred hhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 45778899999999754 78887 4788999999887753
No 165
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=52.07 E-value=5 Score=20.36 Aligned_cols=9 Identities=44% Similarity=0.763 Sum_probs=7.6
Q ss_pred CCCCccccC
Q 043683 13 DLGKRSWLW 21 (256)
Q Consensus 13 ~~~~~~~l~ 21 (256)
-|+||.|||
T Consensus 20 pprkrkrlw 28 (28)
T 3ukw_C 20 PPRKRKRLW 28 (28)
T ss_dssp CCSSCCCCC
T ss_pred cchhhhccC
Confidence 578899998
Done!