BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043685
(620 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 172/558 (30%), Positives = 246/558 (44%), Gaps = 71/558 (12%)
Query: 60 LEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIP-LELSSIEELFLYSNHLNES 118
L++LD+S N L G I ++L +++ SNQ G IP L L S++ L L N
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGE 284
Query: 119 FPPFLGNLSNIVRLYXXXXXXXXXXXXXXGNLKFLFELDLSNNQLGGSIPLSFGNLSNLA 178
P FL G L LDLS N G++P FG+ S L
Sbjct: 285 IPDFLS-----------------------GACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321
Query: 179 RLCLYKNLLIGSIPSS----LGNLKLIDLKLSSNQLTGYIPYSLGNVTXXXXXXX-AKNK 233
L L N G +P + LK++DL S N+ +G +P SL N++ + N
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDL--SFNEFSGELPESLTNLSASLLTLDLSSNN 379
Query: 234 LYGSLPP-----------FVDLSINQFRGFLPPFVGNLTNLERLGLMDNHLSGSIPPSLG 282
G + P + L N F G +PP + N + L L L N+LSG+IP SLG
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439
Query: 283 N-STLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDG 341
+ S L L LN G +P ++ LE I+D G IP+ L NCT+L + L
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499
Query: 342 NNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIG 401
N LTG I + +G NL + LS N+F G I + G C L L+++ N G IP +
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559
Query: 402 NSSQLQALDLSLNQIVGD---------IPKEL-GKSNSLTKLILRG---NQLTGRLPTEI 448
Q+ ++ N I G + KE G N L +R N+L+ R P I
Sbjct: 560 K----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615
Query: 449 GSLIKLEYLDFSANRFNNSVPEIXXXXXXXXXXXXXXXQFVQELPKELEKLVQLSLLDAS 508
S + Y ++ F+N+ +PKE+ + L +L+
Sbjct: 616 TSRV---YGGHTSPTFDNN--------GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664
Query: 509 HNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNST 568
HN G IP ++ L+ L +L+LS N L G IP + L+ ID+S+N L GP+P
Sbjct: 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724
Query: 569 AFRNAPVEALEGNKGLCG 586
F P N GLCG
Sbjct: 725 QFETFPPAKFLNNPGLCG 742
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 187/705 (26%), Positives = 294/705 (41%), Gaps = 124/705 (17%)
Query: 16 SSKISPCAWYGISCND--------AGRVINIS------------------LRNTGLSGTL 49
SS +PC + G++C D + + +N+ L N+ ++G++
Sbjct: 34 SSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV 93
Query: 50 RDLSFSSFPQLEYLDLSLNGLFG--TIPSQIGNLSKLSYISLDSNQLF--GKIP--LELS 103
F L LDLS N L G T + +G+ S L ++++ SN L GK+ L+L+
Sbjct: 94 S--GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151
Query: 104 SIEELFLYSN--------------------HLNESFPPFLGNL--SNIVRLYXXXXXXXX 141
S+E L L +N HL S G++ S V L
Sbjct: 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNN 211
Query: 142 XXXXX--XGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLYKNLLIGSIPSSLGNLK 199
G+ L LD+S N+L G + + L L + N +G IP L
Sbjct: 212 FSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPLKS 270
Query: 200 LIDLKLSSNQLTGYIPYSL-GNVTXXXXXXXAKNKLYGSLPPFV---------DLSINQF 249
L L L+ N+ TG IP L G + N YG++PPF LS N F
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 250 RGFLPPFVGNLTNLERLGLMD---NHLSGSIPPSLGNSTLTWLTFSL--NHFTGYLPHDI 304
G LP + L + L ++D N SG +P SL N + + LT L N+F+G + ++
Sbjct: 331 SGELP--MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 305 CRG--GALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFID 362
C+ L+ + F G IP +L NC+ L+ + L N L+G I +LG L +
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 363 LSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPK 422
L N GEI L TL + N++TG IP + N + L + LS N++ G+IPK
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 423 ELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEIXXXXXXXXXXX 482
+G+ +L L L N +G +P E+G L +LD + N FN ++P
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568
Query: 483 XXX----------------------XQFVQELPKELEKLVQLSLLDASHNLFGGE----- 515
+F ++L +L + + + ++GG
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628
Query: 516 -------------------IPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDIS 556
IP +I S+ L +LNL HN++SGSIP+ + GL+++D+S
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688
Query: 557 DNQLQGPVPNSTAFRNAPVEALEGNKGLCGGVKGMQPCKVYSTHK 601
N+L G +P + + E N L G + M + + K
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 733
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 195/744 (26%), Positives = 303/744 (40%), Gaps = 151/744 (20%)
Query: 16 SSKISPCAWYGISCND--------AGRVINIS------------------LRNTGLSGTL 49
SS +PC + G++C D + + +N+ L N+ ++G++
Sbjct: 31 SSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV 90
Query: 50 RDLSFSSFPQLEYLDLSLNGLFG--TIPSQIGNLSKLSYISLDSNQLF--GKIP--LELS 103
F L LDLS N L G T + +G+ S L ++++ SN L GK+ L+L+
Sbjct: 91 S--GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 148
Query: 104 SIEELFLYSN--------------------HLNESFPPFLGNL--SNIVRLYXXXXXXXX 141
S+E L L +N HL S G++ S V L
Sbjct: 149 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNN 208
Query: 142 XXXXX--XGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLYKNLLIGSIPSSLGNLK 199
G+ L LD+S N+L G + + L L + N +G IP L
Sbjct: 209 FSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPLKS 267
Query: 200 LIDLKLSSNQLTGYIPYSL-GNVTXXXXXXXAKNKLYGSLPPFV---------DLSINQF 249
L L L+ N+ TG IP L G + N YG++PPF LS N F
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 250 RGFLPPFVGNLTNLERLGLMD---NHLSGSIPPSLGNSTLTWLTFSL--NHFTGYLPHDI 304
G LP + L + L ++D N SG +P SL N + + LT L N+F+G + ++
Sbjct: 328 SGELP--MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 385
Query: 305 CRG--GALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFID 362
C+ L+ + F G IP +L NC+ L+ + L N L+G I +LG L +
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 363 LSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPK 422
L N GEI L TL + N++TG IP + N + L + LS N++ G+IPK
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Query: 423 ELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEIXXXXXXXXXXX 482
+G+ +L L L N +G +P E+G L +LD + N FN ++P
Sbjct: 506 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 565
Query: 483 XXX----------------------XQFVQELPKELEKLVQLSLLDASHNLFGGE----- 515
+F ++L +L + + + ++GG
Sbjct: 566 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 625
Query: 516 -------------------IPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSV---- 552
IP +I S+ L +LNL HN++SGSIP+ + GL++
Sbjct: 626 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 685
Query: 553 --------------------IDISDNQLQGPVPNSTAFRNAPVEALEGNKGLCG-GVKGM 591
ID+S+N L GP+P F P N GLCG +
Sbjct: 686 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 745
Query: 592 QPCKV--YSTHKQNSGAKWFAIVF 613
P Y+ H+++ G + + F
Sbjct: 746 DPSNADGYAHHQRSHGRRLENLYF 769
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 107/237 (45%), Gaps = 23/237 (9%)
Query: 191 IPSSLGNLKLIDLKLSS--NQLTGYIPYSLGNVTXXXXXXXAKNKLYGSLPPFV------ 242
IPSSL NL ++ N L G IP ++ +T + G++P F+
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 243 ---DLSINQFRGFLPPFVGNLTNLERLGLMDNHLSGSIPPSLGNST--LTWLTFSLNHFT 297
D S N G LPP + +L NL + N +SG+IP S G+ + T +T S N T
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 298 GYLPHDICRGGALEIFIVDEYR--FQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIY 355
G +P L + VD R +G + + ++ L N+L ++ + +G+
Sbjct: 188 GKIPPTFAN---LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLS 243
Query: 356 PNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLS 412
NL +DL N YG + + L +LNVS NN+ G IP+ LQ D+S
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ----GGNLQRFDVS 296
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 98/240 (40%), Gaps = 26/240 (10%)
Query: 372 ISSNWGKCPKLGTLNVS-MNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSL 430
I S+ P L L + +NN+ G IP I +QL L ++ + G IP L + +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 431 TKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPE-IXXXXXXXXXXXXXXXQFV 489
L N L+G LP I SL L + F NR + ++P+ +
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 490 QELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLS------------ 537
++P L L+ +D S N+ G+ S K+ + ++L+ N+L+
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246
Query: 538 -----------GSIPNCFDGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKGLCG 586
G++P + L +++S N L G +P + V A NK LCG
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 87/199 (43%), Gaps = 9/199 (4%)
Query: 277 IPPSLGNSTLTWLTF----SLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCT 332
IP SL N L +L F +N+ G +P I + L + G IP L
Sbjct: 68 IPSSLAN--LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125
Query: 333 SLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGT-LNVSMNN 391
+L+ + N L+G + ++ PNL I N G I ++G KL T + +S N
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 392 ITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSL 451
+TG IP N + L +DLS N + GD G + K+ L N L L ++G
Sbjct: 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLS 243
Query: 452 IKLEYLDFSANRFNNSVPE 470
L LD NR ++P+
Sbjct: 244 KNLNGLDLRNNRIYGTLPQ 262
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 102/258 (39%), Gaps = 46/258 (17%)
Query: 74 IPSQIGNLSKLSYISLDS-NQLFGKIPLELSSIEEL-FLYSNHLNES--FPPFLGNLSNI 129
IPS + NL L+++ + N L G IP ++ + +L +LY H N S P FL +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI--- 124
Query: 130 VRLYXXXXXXXXXXXXXXGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLYKNLLIG 189
K L LD S N L G++P S +L NL + N + G
Sbjct: 125 ---------------------KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 190 SIPSSLGNLK--LIDLKLSSNQLTGYIPYSLGNVTXXXXXXXAKNKLYGSLPPFVDLSIN 247
+IP S G+ + +S N+LTG IP + N+ FVDLS N
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA----------------FVDLSRN 207
Query: 248 QFRGFLPPFVGNLTNLERLGLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRG 307
G G+ N +++ L N L+ + + L L N G LP + +
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267
Query: 308 GALEIFIVDEYRFQGTIP 325
L V G IP
Sbjct: 268 KFLHSLNVSFNNLCGEIP 285
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 87/202 (43%), Gaps = 15/202 (7%)
Query: 40 LRNTGLSGTLRDLSFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIP 99
+ +T +SG + D S L LD S N L GT+P I +L L I+ D N++ G IP
Sbjct: 108 ITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 100 LELSSIEELF----LYSNHLNESFPPFLGNLSNIVRLYXXXXXXXXXXXXXXGNLKFLFE 155
S +LF + N L PP NL N+ + G+ K +
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 156 LDLSNNQLG---GSIPLSFGNLSNLARLCLYKNLLIGSIPSSLGNLKLI-DLKLSSNQLT 211
+ L+ N L G + LS NL L L N + G++P L LK + L +S N L
Sbjct: 226 IHLAKNSLAFDLGKVGLS----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 212 GYIPYSLGNVTXXXXXXXAKNK 233
G IP GN+ A NK
Sbjct: 282 GEIPQG-GNLQRFDVSAYANNK 302
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 95/268 (35%), Gaps = 67/268 (25%)
Query: 53 SFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPLELSSIEELFLYS 112
+ + QL YL ++ + G IP + + L + N L G +P +SS+
Sbjct: 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN----- 150
Query: 113 NHLNESFPPFLGNLSNIVRLYXXXXXXXXXXXXXXGNLKFLFELDLSNNQLGGSIPLSFG 172
L + N++ G+IP S+G
Sbjct: 151 ----------------------------------------LVGITFDGNRISGAIPDSYG 170
Query: 173 NLSNL-ARLCLYKNLLIGSIPSSLGNLKLIDLKLSSNQLTGYIPYSLGNVTXXXXXXXAK 231
+ S L + + +N L G IP + NL L + LS N L G G+ AK
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230
Query: 232 NKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLERLGLMDNHLSGSIPPSLGN-STLTWLT 290
N L L VG NL L L +N + G++P L L L
Sbjct: 231 NSLAFDLGK----------------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274
Query: 291 FSLNHFTGYLPHDICRGGALEIFIVDEY 318
S N+ G +P +GG L+ F V Y
Sbjct: 275 VSFNNLCGEIP----QGGNLQRFDVSAY 298
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 133/300 (44%), Gaps = 46/300 (15%)
Query: 46 SGTLRDLS-FSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFG-KIPLELS 103
S T+ D+S S L+ L+ S N + P + NL+ L + + SN++ + +L+
Sbjct: 138 SNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLT 195
Query: 104 SIEELFLYSNHLNESFPPFLGNLSNIVRLYXXXXXXXXXXXXXXGNLKFLFELDLSNNQL 163
++E L +N +++ P LG L+N+ L +L L +LDL+NNQ+
Sbjct: 196 NLESLIATNNQISDITP--LGILTNLDEL--SLNGNQLKDIGTLASLTNLTDLDLANNQI 251
Query: 164 GGSIPLSFGNLSNLARLCLYKNLLIGSIPSSLGNLKLIDLKLSSNQLTGYIPYS-LGNVT 222
PLS L+ L L L N I +I G L +L+L+ NQL P S L N+T
Sbjct: 252 SNLAPLS--GLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 308
Query: 223 XXXXXXXAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLERLGLMDNHLSGSIPPSLG 282
++ L N P V +LT L+RL +N +S SL
Sbjct: 309 ------------------YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLA 346
Query: 283 NST-LTWLTFSLNHFTGYLP-HDICRGGALEIFIVDE--------YRFQGTIPTSLRNCT 332
N T + WL+ N + P ++ R ++ + D+ Y+ +IP +++N T
Sbjct: 347 NLTNINWLSAGHNQISDLTPLANLTR--ITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 404
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 132/300 (44%), Gaps = 46/300 (15%)
Query: 46 SGTLRDLS-FSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFG-KIPLELS 103
S T+ D+S S L+ L S N + P + NL+ L + + SN++ + +L+
Sbjct: 138 SNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLT 195
Query: 104 SIEELFLYSNHLNESFPPFLGNLSNIVRLYXXXXXXXXXXXXXXGNLKFLFELDLSNNQL 163
++E L +N +++ P LG L+N+ L +L L +LDL+NNQ+
Sbjct: 196 NLESLIATNNQISDITP--LGILTNLDEL--SLNGNQLKDIGTLASLTNLTDLDLANNQI 251
Query: 164 GGSIPLSFGNLSNLARLCLYKNLLIGSIPSSLGNLKLIDLKLSSNQLTGYIPYS-LGNVT 222
PLS L+ L L L N I +I G L +L+L+ NQL P S L N+T
Sbjct: 252 SNLAPLS--GLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 308
Query: 223 XXXXXXXAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLERLGLMDNHLSGSIPPSLG 282
++ L N P V +LT L+RL +N +S SL
Sbjct: 309 ------------------YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLA 346
Query: 283 NST-LTWLTFSLNHFTGYLP-HDICRGGALEIFIVDE--------YRFQGTIPTSLRNCT 332
N T + WL+ N + P ++ R ++ + D+ Y+ +IP +++N T
Sbjct: 347 NLTNINWLSAGHNQISDLTPLANLTR--ITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 404
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 132/300 (44%), Gaps = 46/300 (15%)
Query: 46 SGTLRDLS-FSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFG-KIPLELS 103
S T+ D+S S L+ L S N + P + NL+ L + + SN++ + +L+
Sbjct: 138 SNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLT 195
Query: 104 SIEELFLYSNHLNESFPPFLGNLSNIVRLYXXXXXXXXXXXXXXGNLKFLFELDLSNNQL 163
++E L +N +++ P LG L+N+ L +L L +LDL+NNQ+
Sbjct: 196 NLESLIATNNQISDITP--LGILTNLDEL--SLNGNQLKDIGTLASLTNLTDLDLANNQI 251
Query: 164 GGSIPLSFGNLSNLARLCLYKNLLIGSIPSSLGNLKLIDLKLSSNQLTGYIPYS-LGNVT 222
PLS L+ L L L N I +I G L +L+L+ NQL P S L N+T
Sbjct: 252 SNLAPLS--GLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 308
Query: 223 XXXXXXXAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLERLGLMDNHLSGSIPPSLG 282
++ L N P V +LT L+RL +N +S SL
Sbjct: 309 ------------------YLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLA 346
Query: 283 NST-LTWLTFSLNHFTGYLP-HDICRGGALEIFIVDE--------YRFQGTIPTSLRNCT 332
N T + WL+ N + P ++ R ++ + D+ Y+ +IP +++N T
Sbjct: 347 NLTNINWLSAGHNQISDLTPLANLTR--ITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 404
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 118/267 (44%), Gaps = 43/267 (16%)
Query: 78 IGNLSKLSYISLDSNQLFG-KIPLELSSIEELFLYSNHLNESFPPFLGNLSNIVRLYXXX 136
+ NL+ L + + SN++ + +L+++E L +N +++ P LG L+N+ L
Sbjct: 172 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDEL--SL 227
Query: 137 XXXXXXXXXXXGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLYKNLLIGSIPSSLG 196
+L L +LDL+NNQ+ PLS L+ L L L N I +I G
Sbjct: 228 NGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN-QISNISPLAG 284
Query: 197 NLKLIDLKLSSNQLTGYIPYS-LGNVTXXXXXXXAKNKLYGSLPPFVDLSINQFRGFLPP 255
L +L+L+ NQL P S L N+T ++ L N P
Sbjct: 285 LTALTNLELNENQLEDISPISNLKNLT------------------YLTLYFNNISDISP- 325
Query: 256 FVGNLTNLERLGLMDNHLSGSIPPSLGNST-LTWLTFSLNHFTGYLP-HDICRGGALEIF 313
V +LT L+RL +N +S SL N T + WL+ N + P ++ R ++
Sbjct: 326 -VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTR--ITQLG 380
Query: 314 IVDE--------YRFQGTIPTSLRNCT 332
+ D+ Y+ +IP +++N T
Sbjct: 381 LNDQAWTNAPVNYKANVSIPNTVKNVT 407
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 118/267 (44%), Gaps = 43/267 (16%)
Query: 78 IGNLSKLSYISLDSNQLFG-KIPLELSSIEELFLYSNHLNESFPPFLGNLSNIVRLYXXX 136
+ NL+ L + + SN++ + +L+++E L +N +++ P LG L+N+ L
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDEL--SL 223
Query: 137 XXXXXXXXXXXGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLYKNLLIGSIPSSLG 196
+L L +LDL+NNQ+ PLS L+ L L L N I +I G
Sbjct: 224 NGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN-QISNISPLAG 280
Query: 197 NLKLIDLKLSSNQLTGYIPYS-LGNVTXXXXXXXAKNKLYGSLPPFVDLSINQFRGFLPP 255
L +L+L+ NQL P S L N+T ++ L N P
Sbjct: 281 LTALTNLELNENQLEDISPISNLKNLT------------------YLTLYFNNISDISP- 321
Query: 256 FVGNLTNLERLGLMDNHLSGSIPPSLGNST-LTWLTFSLNHFTGYLP-HDICRGGALEIF 313
V +LT L+RL +N +S SL N T + WL+ N + P ++ R ++
Sbjct: 322 -VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTR--ITQLG 376
Query: 314 IVDE--------YRFQGTIPTSLRNCT 332
+ D+ Y+ +IP +++N T
Sbjct: 377 LNDQAWTNAPVNYKANVSIPNTVKNVT 403
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 118/267 (44%), Gaps = 43/267 (16%)
Query: 78 IGNLSKLSYISLDSNQLFG-KIPLELSSIEELFLYSNHLNESFPPFLGNLSNIVRLYXXX 136
+ NL+ L + + SN++ + +L+++E L +N +++ P LG L+N+ L
Sbjct: 173 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDEL--SL 228
Query: 137 XXXXXXXXXXXGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLYKNLLIGSIPSSLG 196
+L L +LDL+NNQ+ PLS L+ L L L N I +I G
Sbjct: 229 NGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN-QISNISPLAG 285
Query: 197 NLKLIDLKLSSNQLTGYIPYS-LGNVTXXXXXXXAKNKLYGSLPPFVDLSINQFRGFLPP 255
L +L+L+ NQL P S L N+T ++ L N P
Sbjct: 286 LTALTNLELNENQLEDISPISNLKNLT------------------YLTLYFNNISDISP- 326
Query: 256 FVGNLTNLERLGLMDNHLSGSIPPSLGNST-LTWLTFSLNHFTGYLP-HDICRGGALEIF 313
V +LT L+RL +N +S SL N T + WL+ N + P ++ R ++
Sbjct: 327 -VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTR--ITQLG 381
Query: 314 IVDE--------YRFQGTIPTSLRNCT 332
+ D+ Y+ +IP +++N T
Sbjct: 382 LNDQAWTNAPVNYKANVSIPNTVKNVT 408
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 118/267 (44%), Gaps = 43/267 (16%)
Query: 78 IGNLSKLSYISLDSNQLFG-KIPLELSSIEELFLYSNHLNESFPPFLGNLSNIVRLYXXX 136
+ NL+ L + + SN++ + +L+++E L +N +++ P LG L+N+ L
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDEL--SL 223
Query: 137 XXXXXXXXXXXGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLYKNLLIGSIPSSLG 196
+L L +LDL+NNQ+ PLS L+ L L L N I +I G
Sbjct: 224 NGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN-QISNISPLAG 280
Query: 197 NLKLIDLKLSSNQLTGYIPYS-LGNVTXXXXXXXAKNKLYGSLPPFVDLSINQFRGFLPP 255
L +L+L+ NQL P S L N+T ++ L N P
Sbjct: 281 LTALTNLELNENQLEDISPISNLKNLT------------------YLTLYFNNISDISP- 321
Query: 256 FVGNLTNLERLGLMDNHLSGSIPPSLGNST-LTWLTFSLNHFTGYLP-HDICRGGALEIF 313
V +LT L+RL +N +S SL N T + WL+ N + P ++ R ++
Sbjct: 322 -VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTR--ITQLG 376
Query: 314 IVDE--------YRFQGTIPTSLRNCT 332
+ D+ Y+ +IP +++N T
Sbjct: 377 LNDQAWTNAPVNYKANVSIPNTVKNVT 403
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 372 ISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLT 431
IS+N K L L ++ N++T +P EI N S L+ LDLS N++ +P ELG L
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLK 296
Query: 432 KLILRGNQLTGRLPTEIGSLIKLEYLDFSAN 462
N +T LP E G+L L++L N
Sbjct: 297 YFYFFDNMVTT-LPWEFGNLCNLQFLGVEGN 326
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 396 IPREIGNSSQL-QALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKL 454
+P++ QL ALDLS QI +I + K + LT+L L GN LT LP EI +L L
Sbjct: 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNL 272
Query: 455 EYLDFSANR 463
LD S NR
Sbjct: 273 RVLDLSHNR 281
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 65 LSLNG-LFGTIPSQIGNLSKLSYISLDSNQLFGKIPLELSSIEEL--FLYSNHLNESFPP 121
L LNG +P++I NLS L + L N+L +P EL S +L F + +++ + P
Sbjct: 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYFFDNMVTTLPW 310
Query: 122 FLGNLSNI 129
GNL N+
Sbjct: 311 EFGNLCNL 318
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 325 PTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGT 384
PT L N SL+ L N+L SEA PNL ++DLS N+ + + L
Sbjct: 60 PTRLTNLHSLL---LSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116
Query: 385 LNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKS-NSLTKLIL 435
L + N+I + +QLQ L LS NQI P EL K N L KL+L
Sbjct: 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLML 167
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 118/272 (43%), Gaps = 40/272 (14%)
Query: 27 ISCNDAGRVINIS---LRNTGLSGTLRDLSFSSFPQLEYLDLSLNGLFGTIPSQIGNLSK 83
IS +D R +N+ L + G+ T+ + SFSS LE+LDLS N L S LS
Sbjct: 67 ISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125
Query: 84 LSYISLDSNQLFGKIPLELSSIEELFLYSNHLNESFPPFLGNLSNIVRLYXXXXXXXXXX 143
L++++L N P + ++ E L+S HL + +GN+ ++
Sbjct: 126 LTFLNLLGN------PYK--TLGETSLFS-HLTKLQILRVGNMDTFTKI----------Q 166
Query: 144 XXXXGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLY--KNLLIGSI----PSSLGN 197
L FL EL++ + L P S ++ N++ L L+ +++L+ I SS+
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226
Query: 198 LKLIDL--------KLSSNQLTGYI-PYSLGNVTXXXXXXXAKNKLYGSLPPFVDL--SI 246
L+L D +LS+ + I ++ NV KL + ++L S
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286
Query: 247 NQFRGFLPPFVGNLTNLERLGLMDNHLSGSIP 278
NQ + LT+L+++ L N S P
Sbjct: 287 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 388 SMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTE 447
S+N+I G+ + ++LDLS N+I +L + +L L+L N +
Sbjct: 42 SLNSIPSGLTEAV------KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 95
Query: 448 IGSLIKLEYLDFSANRFNN 466
SL LE+LD S N +N
Sbjct: 96 FSSLGSLEHLDLSYNYLSN 114
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 80/187 (42%), Gaps = 18/187 (9%)
Query: 26 GISCNDAGRVINISLRNTGLSGTLRDLSFSSFP-QLEYLDLSLNGLFGTIPSQIGNLSKL 84
G +CN+ + ++ G D S P E LDL GL + L+KL
Sbjct: 9 GCTCNEGKKEVDCQ-------GKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKL 61
Query: 85 SYISLDSNQ---LFGKIPLELSSIEELFLYSNHLNESFPPFLGNLSNIVRLYXXXXXXXX 141
++++LD NQ L + +L+ + L L +N L +L+ + +LY
Sbjct: 62 TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS 121
Query: 142 XXXXXXGNLKFLFELDLSNNQLGGSIPL-SFGNLSNLARLCLYKNLLIGSIP----SSLG 196
L L EL L+ NQL SIP +F L+NL L L N L S+P LG
Sbjct: 122 LPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFDRLG 179
Query: 197 NLKLIDL 203
L+ I L
Sbjct: 180 KLQTITL 186
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 80/187 (42%), Gaps = 18/187 (9%)
Query: 26 GISCNDAGRVINISLRNTGLSGTLRDLSFSSFP-QLEYLDLSLNGLFGTIPSQIGNLSKL 84
G +CN+ + ++ G D S P E LDL GL + L+KL
Sbjct: 9 GCTCNEGKKEVDCQ-------GKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKL 61
Query: 85 SYISLDSNQ---LFGKIPLELSSIEELFLYSNHLNESFPPFLGNLSNIVRLYXXXXXXXX 141
++++LD NQ L + +L+ + L L +N L +L+ + +LY
Sbjct: 62 TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS 121
Query: 142 XXXXXXGNLKFLFELDLSNNQLGGSIPL-SFGNLSNLARLCLYKNLLIGSIP----SSLG 196
L L EL L+ NQL SIP +F L+NL L L N L S+P LG
Sbjct: 122 LPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFDRLG 179
Query: 197 NLKLIDL 203
L+ I L
Sbjct: 180 KLQTITL 186
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 62/145 (42%), Gaps = 16/145 (11%)
Query: 57 FPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQL-------FGKIPLELSSIEELF 109
P + YL L N L S + L+ L+Y+ L NQL F K L++++EL
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDK----LTNLKELV 115
Query: 110 LYSNHLNESFPP-FLGNLSNIVRLYXXXXXXXXXXXXXXGNLKFLFELDLSNNQLGGSIP 168
L N L +S P L+N+ L L L ELDLS NQL
Sbjct: 116 LVENQL-QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174
Query: 169 LSFGNLSNLARLCLYKNLLIGSIPS 193
F L+ L L LY+N L S+P
Sbjct: 175 GVFDKLTQLKDLRLYQNQL-KSVPD 198
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 522 SLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQG 562
L +L LNL+HN L FD + L+ +D+S NQLQ
Sbjct: 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 61/145 (42%), Gaps = 16/145 (11%)
Query: 57 FPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQL-------FGKIPLELSSIEELF 109
P + YL L N L S + L+ L+Y+ L NQL F K L++++EL
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDK----LTNLKELV 115
Query: 110 LYSNHLNESFPP-FLGNLSNIVRLYXXXXXXXXXXXXXXGNLKFLFELDLSNNQLGGSIP 168
L N L +S P L+N+ LY L L LDL NNQL
Sbjct: 116 LVENQL-QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPE 174
Query: 169 LSFGNLSNLARLCLYKNLLIGSIPS 193
F L+ L +L L N L S+P
Sbjct: 175 GVFDKLTQLKQLSLNDNQL-KSVPD 198
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Query: 366 NNFYGEISSN--WGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKE 423
+N G ISS+ +G+ P L L + N +TG P +S +Q L L N+I K
Sbjct: 38 DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM 97
Query: 424 LGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFN 465
+ L L L NQ++ +P L L L+ ++N FN
Sbjct: 98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 22/111 (19%)
Query: 187 LIGSIPSSLGNLKLIDLKLSSNQLTGYIPYSLGNVTXXXXXXXAKNKLYGSLPPFVDLSI 246
L G +P L+ L+L NQLTG P + + +NK+ ++S
Sbjct: 49 LFGRLP------HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-------EISN 95
Query: 247 NQFRGFLPPFVGNLTNLERLGLMDNHLSGSIPPSLGN-STLTWLTFSLNHF 296
F G L L+ L L DN +S +P S + ++LT L + N F
Sbjct: 96 KMFLG--------LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 9/152 (5%)
Query: 326 TSLRNC---TSLIRVRLDGNNLT--GNISEALGIYPNLTFIDLSRNNF-YGEISSNWGKC 379
T NC T L + L N L I+E +L +D+S+N+ Y E +
Sbjct: 339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398
Query: 380 PKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQ 439
L +LN+S N +T I R + +++ LDL N+I IPK++ K +L +L + NQ
Sbjct: 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQ 455
Query: 440 LTGRLPTEIGSLIKLEYLDFSANRFNNSVPEI 471
L L L+ + N ++ S P I
Sbjct: 456 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 487
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 85/368 (23%), Positives = 148/368 (40%), Gaps = 45/368 (12%)
Query: 242 VDLSINQFRGF-LPPFVGNLTNLERLGLMDNHLSGS--IPPSLGNSTLTWLTFSLNHFTG 298
+DLS N F + GN++ L+ LGL HL S +P + N + L +
Sbjct: 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEK 154
Query: 299 YLPHDI--CRGGALEIFIVDEYRFQGTIPTSLRNCTSL----IRVRLDGNNLTGNISEAL 352
P + +L I F + S++ +L I+ L+ N + +S
Sbjct: 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA 214
Query: 353 GIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTL---------NVSMNNITGGIPREIGNS 403
+ N +L+ NN I + W ++ L ++S + G + +
Sbjct: 215 KLQTNPKLSNLTLNN----IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY 270
Query: 404 SQLQALDLSLNQIVGDI---PK----ELGKSNSLTKLILRGNQLTGRL-PTEIGSLIKLE 455
S LS++Q+V D+ P+ E+ + ++ + G ++ L P++I +
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFL--- 327
Query: 456 YLDFSANRFNNSVPEIXXXXXXXXXXXXXXXQFVQELPKELEKLVQ---LSLLDASHNLF 512
+LDFS N ++V E Q ++EL K E Q L LD S N
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSV 386
Query: 513 GGEIPFQICSL-KSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNSTAFR 571
+ CS KSL LN+S N L+ +I C + V+D+ N+++ +P
Sbjct: 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKIKS-IPKQV--- 440
Query: 572 NAPVEALE 579
+EAL+
Sbjct: 441 -VKLEALQ 447
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 13/137 (9%)
Query: 153 LFELDLSNNQLGGSIPLSFGNLSNLARLCLYKNLL-----IGSIPSSLGNLKLIDL---K 204
LD SNN L ++ + G+L+ L L L N L I + + + +L+ +D+
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385
Query: 205 LSSNQLTGYIPYSLGNVTXXXXXXXAKNKLYGSLPPFV---DLSINQFRGFLPPFVGNLT 261
+S ++ G ++ ++ + ++ LPP + DL N+ + +P V L
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLE 444
Query: 262 NLERLGLMDNHLSGSIP 278
L+ L + N L S+P
Sbjct: 445 ALQELNVASNQL-KSVP 460
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 46 SGTLRDLSFSSFP-QLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIP----L 100
S L D F P +++ LDL N + +IP Q+ L L +++ SNQL +P
Sbjct: 408 SNILTDTIFRCLPPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQL-KSVPDGIFD 465
Query: 101 ELSSIEELFLYSNHLNESFP 120
L+S+++++L++N + S P
Sbjct: 466 RLTSLQKIWLHTNPWDCSCP 485
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 140/318 (44%), Gaps = 60/318 (18%)
Query: 156 LDLSNNQLGGSIPLSFGNLSNLARLCLYKNLLIGSIP----SSLGNLK-LIDLKLSSNQL 210
L+L+ NQ+ PLS NL +L NL IG+ S+L NL L +L L+ + +
Sbjct: 71 LNLNGNQITDISPLS-----NLVKLT---NLYIGTNKITDISALQNLTNLRELYLNEDNI 122
Query: 211 TGYIPYSLGNVTXXXXXXXAKNKLYGSLPP--------FVDLSINQFRGFLPPFVGNLTN 262
+ P L N+T N L P ++ ++ ++ + P + NLT+
Sbjct: 123 SDISP--LANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTP--IANLTD 178
Query: 263 LERLGLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQG 322
L L L N + P L LT SL++FT Y+ Q
Sbjct: 179 LYSLSLNYNQIEDISP-------LASLT-SLHYFTAYVN-------------------QI 211
Query: 323 TIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKL 382
T T + N T L +++ GNN ++S L LT++++ N +I++ KL
Sbjct: 212 TDITPVANXTRLNSLKI-GNNKITDLS-PLANLSQLTWLEIGTNQI-SDINA-VKDLTKL 267
Query: 383 GTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTG 442
LNV N I+ + N SQL +L L+ NQ+ + + +G +LT L L N +T
Sbjct: 268 KXLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITD 325
Query: 443 RLPTEIGSLIKLEYLDFS 460
P + SL K + DF+
Sbjct: 326 IRP--LASLSKXDSADFA 341
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 332 TSLIRVRLDGNNLTGN-ISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMN 390
+SL +++ GN+ N + + NLTF+DLS+ + + L LN+S N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Query: 391 NI--TGGIPREIGNSSQLQALDLSLNQIVGDIPKEL 424
N P + NS LQ LD SLN I+ +EL
Sbjct: 505 NFFSLDTFPYKCLNS--LQVLDYSLNHIMTSKKQEL 538
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 91/239 (38%), Gaps = 23/239 (9%)
Query: 352 LGIYPNLTFIDLSRNNFYGEISSNWG-------KCPKLGTLNVSMNNIT--GGIPREIGN 402
G +P L L R F +SN G P L L++S N ++ G +
Sbjct: 316 FGQFPTLKLKSLKRLTF----TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371
Query: 403 SSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIG-SLIKLEYLDFSA 461
++ L+ LDLS N ++ LG L L + + L + SL L YLD S
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430
Query: 462 NRFNNSVPEIXXXXXXXXXXXXXXXQFVQE-LPKELEKLVQLSLLDASHNLFGGEIPFQI 520
+ I F + LP +L L+ LD S P
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490
Query: 521 CSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGP-------VPNSTAFRN 572
SL SL++LN+SHNN + ++ L V+D S N + P+S AF N
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 549
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 518 FQICSLKSLEMLNLSHNNL-SGSIPNCFDGMHGLSVIDISDNQLQG 562
F I LK+L+ LN++HN + S +P F + L +D+S N++Q
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 122/330 (36%), Gaps = 52/330 (15%)
Query: 259 NLTNLE-RLGLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDE 317
NLT E RL +D +L G I L N +FSL T D + +
Sbjct: 280 NLTIEEFRLAYLDYYLDGII--DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN 337
Query: 318 YRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRN--NFYGEISSN 375
+F G PT SL R+ N SE P+L F+DLSRN +F G S +
Sbjct: 338 CKF-GQFPT--LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQS 392
Query: 376 WGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLS---LNQIVGDIPKELGKSNSLTK 432
L L++S N + +G QL+ LD L Q+ E SL
Sbjct: 393 DFGTISLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQM-----SEFSVFLSLRN 446
Query: 433 LI-LRGNQLTGRLPTE--IGSLIKLEYLDFSANRFNNSVPEIXXXXXXXXXXXXXXXQFV 489
LI L + R+ L LE L + N F +
Sbjct: 447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF--------------------- 485
Query: 490 QELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHG 549
LP +L L+ LD S P SL SL++LN+SHNN + ++
Sbjct: 486 --LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 543
Query: 550 LSVIDISDNQLQGP-------VPNSTAFRN 572
L V+D S N + P+S AF N
Sbjct: 544 LQVLDYSLNHIMTSKKQELQHFPSSLAFLN 573
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 518 FQICSLKSLEMLNLSHNNL-SGSIPNCFDGMHGLSVIDISDNQLQG 562
F I LK+L+ LN++HN + S +P F + L +D+S N++Q
Sbjct: 142 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 54/140 (38%), Gaps = 24/140 (17%)
Query: 350 EALGIYPNLTFIDLSRNNFYGEISSNWGKCPK-------LGTLNVSMNNITGGIPREIGN 402
E + +P LT +DLS N GE CP L N M TG
Sbjct: 163 EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222
Query: 403 SSQLQALDLSLNQIVGDI----PKELGKS--NSLTKLILRGNQLTGRLPTEIGSLIKLEY 456
Q +LDLS N + + P+ + S NSL Q+ LP KL
Sbjct: 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPA------KLRV 276
Query: 457 LDFSANRFN-----NSVPEI 471
LD S+NR N + +PE+
Sbjct: 277 LDLSSNRLNRAPQPDELPEV 296
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 23/160 (14%)
Query: 27 ISCNDAGRVINIS---LRNTGLSGTLRDLSFSSFPQLEYLDLSLNGLFGTIPSQIGNLSK 83
IS +D R +N+ L + G+ T+ + SFSS LE+LDLS N L S LS
Sbjct: 41 ISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 99
Query: 84 LSYISLDSNQLFGKIPLELSSIEELFLYSNHLNESFPPFLGNLSNIVRLYXXXXXXXXXX 143
L++++L N ++ E L+S HL + +GN+ ++
Sbjct: 100 LTFLNLLGN--------PYKTLGETSLFS-HLTKLQILRVGNMDTFTKI----------Q 140
Query: 144 XXXXGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLY 183
L FL EL++ + L P S ++ N++ L L+
Sbjct: 141 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 180
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 388 SMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTE 447
S+N+I G+ + ++LDLS N+I +L + +L L+L N +
Sbjct: 16 SLNSIPSGLTEAV------KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 69
Query: 448 IGSLIKLEYLDFSANRFNN 466
SL LE+LD S N +N
Sbjct: 70 FSSLGSLEHLDLSYNYLSN 88
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 54 FSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPL----ELSSIEELF 109
F S QL YL+L++N L L+KL++++L NQL IP+ L S+ ++
Sbjct: 60 FDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQL-KSIPMGVFDNLKSLTHIY 118
Query: 110 LYSN 113
L++N
Sbjct: 119 LFNN 122
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 96/248 (38%), Gaps = 15/248 (6%)
Query: 336 RVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNIT-- 393
+R + LT S GI + T ++L N + K +L L++S N ++
Sbjct: 11 EIRCNSKGLT---SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67
Query: 394 GGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIG-SLI 452
G + ++ L+ LDLS N ++ LG L L + + L + SL
Sbjct: 68 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLR 126
Query: 453 KLEYLDFSANRFNNSVPEIXXXXXXXXXXXXXXXQFVQE-LPKELEKLVQLSLLDASHNL 511
L YLD S + I F + LP +L L+ LD S
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186
Query: 512 FGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGP-------V 564
P SL SL++LN+SHNN + ++ L V+D S N +
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246
Query: 565 PNSTAFRN 572
P+S AF N
Sbjct: 247 PSSLAFLN 254
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 122/333 (36%), Gaps = 52/333 (15%)
Query: 252 FLPPFVGNLTNLERLGLMDNHLSG-SIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGAL 310
F+P V NL NLE L L NH+S P L L F N+ Y+ + R
Sbjct: 119 FIP--VHNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQ-NNAIHYISREDMRSLEQ 175
Query: 311 EIFI-----------VDEYRFQGTIPTSLR-NCTSLIRVRLDGNNLTGNISEALGIYPNL 358
I + ++ F TI SL T + V +G + S LG + ++
Sbjct: 176 AINLSLNFNGNNVKGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQSLWLGTFEDI 235
Query: 359 TFIDLSRNNFYG--EISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQI 416
D+S G E+S + +LN+ + + +QLQ LDL+ +
Sbjct: 236 DDEDISSAMLKGLCEMS--------VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHL 287
Query: 417 VGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEIXXXXX 476
G +P + N L KL+L N + L +L N V ++
Sbjct: 288 KG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN-----VKKLHLGVG 341
Query: 477 XXXXXXXXXXQFVQELPKELEKLVQLSLLDASHNLFGGE--IPFQICSLKSLEMLNLSHN 534
LEKL L LD SHN Q+ +L L+ LNLSHN
Sbjct: 342 C------------------LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHN 383
Query: 535 NLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNS 567
G F L ++D++ +L P S
Sbjct: 384 EPLGLQSQAFKECPQLELLDLAFTRLHINAPQS 416
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 70/188 (37%), Gaps = 41/188 (21%)
Query: 241 FVDLSINQFRGFLPPFVGNLTNLERLGLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYL 300
F D+S F+ F T L+ L L HL G G + L L S+NHF
Sbjct: 263 FSDISSTTFQCF--------TQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFD--- 311
Query: 301 PHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGN----NLTGNISEALGIYP 356
+C+ A N SL + + GN +L E LG
Sbjct: 312 --QLCQISA-------------------ANFPSLTHLYIRGNVKKLHLGVGCLEKLG--- 347
Query: 357 NLTFIDLSRNNFYGE--ISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLN 414
NL +DLS N+ S L TLN+S N G + QL+ LDL+
Sbjct: 348 NLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFT 407
Query: 415 QIVGDIPK 422
++ + P+
Sbjct: 408 RLHINAPQ 415
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 57 FPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPLE-LSSIEELFLYSNHL 115
PQLE L L N + T + + L+KL +SL+ NQ+ +PL L+ ++ L+L NH+
Sbjct: 130 LPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI 187
Query: 116 NE 117
++
Sbjct: 188 SD 189
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 5/149 (3%)
Query: 40 LRNTGLSGTLRDLSFSSFPQLEYLDL-SLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKI 98
LRN + ++ +F+ P L LDL L L LS L Y++L L +I
Sbjct: 143 LRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL-REI 200
Query: 99 P--LELSSIEELFLYSNHLNESFPPFLGNLSNIVRLYXXXXXXXXXXXXXXGNLKFLFEL 156
P L ++EL L NHL+ P L ++ +L+ NL+ L E+
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260
Query: 157 DLSNNQLGGSIPLSFGNLSNLARLCLYKN 185
+L++N L F L +L R+ L+ N
Sbjct: 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 523 LKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNST----------AFRN 572
L+ LE+L LS N++ F+G+ L+ +++ DN+L +PN RN
Sbjct: 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT-IPNGAFVYLSKLKELWLRN 145
Query: 573 APVEAL 578
P+E++
Sbjct: 146 NPIESI 151
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 42/202 (20%)
Query: 278 PPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRV 337
PPS S+ T+L F+ N FT + FQG ++L+ +LI
Sbjct: 349 PPS--PSSFTFLNFTQNVFTDSV-------------------FQGC--STLKRLQTLILQ 385
Query: 338 RLDGNN------LTGNIS--EALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSM 389
R N +T N+S E L + N S N+ + + W + + LN+S
Sbjct: 386 RNGLKNFFKVALMTKNMSSLETLDVSLN------SLNSHAYDRTCAWAE--SILVLNLSS 437
Query: 390 NNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIG 449
N +TG + R + +++ LDL N+I+ IPK++ +L +L + NQL
Sbjct: 438 NMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFD 494
Query: 450 SLIKLEYLDFSANRFNNSVPEI 471
L L+Y+ N ++ + P I
Sbjct: 495 RLTSLQYIWLHDNPWDCTCPGI 516
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 54/101 (53%), Gaps = 11/101 (10%)
Query: 25 YGISCNDAGRVINISLRNTGLSGTL-RDLSFSSFPQLEYLDLSLNGLFGTIPSQIGNLSK 83
Y +C A ++ ++L + L+G++ R L P+++ LDL N +IP + +L
Sbjct: 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLP----PKVKVLDLH-NNRIMSIPKDVTHLQA 474
Query: 84 LSYISLDSNQLFGKIP----LELSSIEELFLYSNHLNESFP 120
L +++ SNQL +P L+S++ ++L+ N + + P
Sbjct: 475 LQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 128/499 (25%), Positives = 182/499 (36%), Gaps = 102/499 (20%)
Query: 153 LFELDLSNNQLGGSIPLS--FGNLSNLARLCLYKN----LLIGSIPSSLGNLKLIDLKLS 206
LFEL L L ++ F NL L RL L KN L + L +LK ID S
Sbjct: 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF--S 156
Query: 207 SNQLTGYIPYSLGNV--TXXXXXXXAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLE 264
SNQ+ + L + A N LY + +N FR + LE
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV---------LE 207
Query: 265 RLGLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGA--LEIFIVDEYRFQG 322
L + N + I + N+ FSL L H I G I D+ F G
Sbjct: 208 ILDVSGNGWTVDITGNFSNAISKSQAFSL-----ILAHHIMGAGFGFHNIKDPDQNTFAG 262
Query: 323 TIPTSLRNC------------------TSLIRVRLDGNNLTGNISEALGIYPNLTFIDLS 364
+S+R+ L + L N + EA NL ++LS
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322
Query: 365 RNNFYGEI-SSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQI--VGDIP 421
N GE+ SSN+ PK+ +++ N+I + +LQ LDL N + + IP
Sbjct: 323 YN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIP 381
Query: 422 KELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNN--------SVPEIXX 473
S+ + L GN+L LP +I L +L S NR N VP +
Sbjct: 382 -------SIPDIFLSGNKLVT-LP-KINLTANLIHL--SENRLENLDILYFLLRVPHLQI 430
Query: 474 XXXXXXXXXXXXXQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQIC-----SLKSLEM 528
+ P E L QL L N+ ++C L L++
Sbjct: 431 LILNQNRFSSCSGD---QTPSENPSLEQLFL---GENMLQLAWETELCWDVFEGLSHLQV 484
Query: 529 LNLSHNNLSGSIPNCFD---GMHGLS-------------------VIDISDNQLQGPVPN 566
L L+HN L+ P F + GLS ++DIS NQL P P+
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPD 544
Query: 567 STAFRNAPVEALEGNKGLC 585
F + V + NK +C
Sbjct: 545 --VFVSLSVLDITHNKFIC 561
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 57 FPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPLE-LSSIEELFLYSNHL 115
PQLE L L N + T + + L+KL +SL+ NQ+ +PL L+ ++ L+L NH+
Sbjct: 151 LPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI 208
Query: 116 NE 117
++
Sbjct: 209 SD 210
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 106 EELFLYSNHLNESFPPFLGNLSNIVRLYXXXXXXXXXXXXXXGNLKFLFELDLSNNQLGG 165
+ L+L +N + + P +L N+ +LY L L +LDL++N L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL-K 94
Query: 166 SIPL-SFGNLSNLARLCLYKN 185
SIP +F NL +L + LY N
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNN 115
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 57 FPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPL-ELSSIEELFLYSNHL 115
PQLE L L N + T + + L+KL +SL+ NQ+ +PL L+ ++ L+L NH+
Sbjct: 131 LPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIRRIVPLARLTKLQNLYLSKNHI 188
Query: 116 NE 117
++
Sbjct: 189 SD 190
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 57 FPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPLE-LSSIEELFLYSNHL 115
PQLE L L N + T + + L+KL +SL+ NQ+ +PL L+ ++ L+L NH+
Sbjct: 151 LPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI 208
Query: 116 NE 117
++
Sbjct: 209 SD 210
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 57 FPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPLE-LSSIEELFLYSNHL 115
PQLE L L N + T + + L+KL +SL+ NQ+ +PL L+ ++ L+L NH+
Sbjct: 151 LPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI 208
Query: 116 NE 117
++
Sbjct: 209 SD 210
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 57 FPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPLE-LSSIEELFLYSNHL 115
PQLE L L N + T + + L+KL +SL+ NQ+ +PL L+ ++ L+L NH+
Sbjct: 133 LPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI 190
Query: 116 NE 117
++
Sbjct: 191 SD 192
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 52/132 (39%), Gaps = 25/132 (18%)
Query: 350 EALGIYPNLTFIDLSRNNFYGEISSNWGKCP-KLGTL------NVSMNNITGGIPREIGN 402
E + ++P L+ +DLS N GE CP K TL N M +G
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226
Query: 403 SSQLQALDLSLNQIVG-------DIPKELGKSN-SLTKLILRGNQLTGRLPTEIGSLIKL 454
QLQ LDLS N + D P +L N S T L Q+ LP KL
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL----KQVPKGLPA------KL 276
Query: 455 EYLDFSANRFNN 466
LD S NR +
Sbjct: 277 SVLDLSYNRLDR 288
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 57 FPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPLE-LSSIEELFLYSNHL 115
PQLE L L N + T + + L+KL +SL+ NQ+ +PL L+ ++ L+L NH+
Sbjct: 131 LPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI 188
Query: 116 NE 117
++
Sbjct: 189 SD 190
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 57 FPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPLE-LSSIEELFLYSNHL 115
PQLE L L N + T + + L+KL +SL+ NQ+ +PL L+ ++ L+L NH+
Sbjct: 128 LPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVPLACLTKLQNLYLSKNHI 185
Query: 116 NE 117
++
Sbjct: 186 SD 187
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 57 FPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPLE-LSSIEELFLYSNHL 115
PQLE L L N + T + + L+KL +SL+ NQ+ +PL L+ ++ L+L NH+
Sbjct: 133 LPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI 190
Query: 116 NE 117
++
Sbjct: 191 SD 192
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 9/165 (5%)
Query: 301 PHDICRGG--ALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEA-LGIYPN 357
PH IC A + + + R +P L T+++ + NL S A L Y
Sbjct: 1 PHPICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHL---SENLLYTFSLATLMPYTR 57
Query: 358 LTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIV 417
LT ++L R ++ + G P LGTL++S N + +P L LD+S N++
Sbjct: 58 LTQLNLDRCEL-TKLQVD-GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 114
Query: 418 GDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSAN 462
L L +L L+GN+L P + KLE L + N
Sbjct: 115 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 159
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 57 FPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPLE-LSSIEELFLYSNHL 115
PQLE L L N + T + + L+KL +SL+ NQ+ +PL L+ ++ L+L NH+
Sbjct: 153 LPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI 210
Query: 116 NE 117
++
Sbjct: 211 SD 212
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 57 FPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPLE-LSSIEELFLYSNHL 115
PQLE L L N + T + + L+KL +SL+ NQ+ +PL L+ ++ L+L NH+
Sbjct: 128 LPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI 185
Query: 116 NE 117
++
Sbjct: 186 SD 187
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 31/152 (20%)
Query: 332 TSLIRVRLDGNNLTGNISEALGIYP--NLTFIDLSRNNFYG-EISSNWGKCPKLGTLNVS 388
T+L + D N LT L + P LT+++ N ++S N P L LN +
Sbjct: 85 TNLTYLACDSNKLTN-----LDVTPLTKLTYLNCDTNKLTKLDVSQN----PLLTYLNCA 135
Query: 389 MNNITGGIPREIGNSSQLQALDLSLNQIVG--DIPKELGKS------NSLTKLILRGNQL 440
N +T ++ +++QL LD LN+ + D+ + + N +T+L + N+L
Sbjct: 136 RNTLT---EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKL 192
Query: 441 TGRLPTEIGSLIKLE--------YLDFSANRF 464
RL + ++ KL+ +LD S+N+
Sbjct: 193 LNRLNCDTNNITKLDLNQNIQLTFLDCSSNKL 224
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 492 LPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLS 551
+PKEL L+L+D S+N ++ L L LS+N L P FDG+ L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 552 VIDISDNQL 560
++ + N +
Sbjct: 106 LLSLHGNDI 114
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 339 LDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPR 398
LDGN T + + L Y +LT IDLS N + ++ +L TL +S N + PR
Sbjct: 38 LDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR 96
Query: 399 EIGNSSQLQALDLSLNQI 416
L+ L L N I
Sbjct: 97 TFDGLKSLRLLSLHGNDI 114
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 55/141 (39%), Gaps = 27/141 (19%)
Query: 420 IPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEIXXXXXXXX 479
+PK G +T+L L GNQ T +P E+ + L +D S NR + +
Sbjct: 25 LPK--GIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQ--------- 72
Query: 480 XXXXXXXQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGS 539
+ QL L S+N P LKSL +L+L N++S
Sbjct: 73 ---------------SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117
Query: 540 IPNCFDGMHGLSVIDISDNQL 560
F+ + LS + I N L
Sbjct: 118 PEGAFNDLSALSHLAIGANPL 138
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 89/215 (41%), Gaps = 29/215 (13%)
Query: 361 IDLSRNNFYGEISSNWGKC-PKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGD 419
I+L ++ F+ ISSN C L L+++ +++ +P + S L+ L LS N+
Sbjct: 259 INLQKHYFFN-ISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENL 316
Query: 420 IPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLE---YLDFSANRFNNS--------- 467
SLT L ++GN T RL G L LE LD S + S
Sbjct: 317 CQISASNFPSLTHLSIKGN--TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374
Query: 468 VPEIXXXXXXXXXXXXXXXQFVQELPKELEKLVQLSLLDASHNLF---GGEIPFQICSLK 524
+ + + +E P QL LLD + + PFQ +L
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECP-------QLELLDLAFTRLKVKDAQSPFQ--NLH 425
Query: 525 SLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQ 559
L++LNLSH+ L S FDG+ L +++ N
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 74/176 (42%), Gaps = 33/176 (18%)
Query: 48 TLRDLSFSSFPQLEYLDLSLNGLF---GTIPSQIGNLSKL-----SYISLDSNQLFGKIP 99
+L+ +F PQLE LDL+ L P Q +L K+ S + + S QLF +P
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449
Query: 100 LELSSIEELFLYSNHLNESFPPFLGNLSNIVRLYXXXXXXXXXXXXXXGNLKFLFELDLS 159
+++ L L NH FP GN+ L G L+ L LS
Sbjct: 450 ----ALQHLNLQGNH----FPK--GNIQKTNSL------------QTLGRLEILV---LS 484
Query: 160 NNQLGGSIPLSFGNLSNLARLCLYKNLLIGSIPSSLGNLKLIDLKLSSNQLTGYIP 215
L +F +L + + L N L S +L +LK I L L+SN ++ +P
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILP 540
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 9/168 (5%)
Query: 302 HDICRGG--ALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEA-LGIYPNL 358
H IC A + + + R +P L T+++ + NL S A L Y L
Sbjct: 1 HPICEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHL---SENLLYTFSLATLMPYTRL 57
Query: 359 TFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVG 418
T ++L R ++ + G P LGTL++S N + +P L LD+S N++
Sbjct: 58 TQLNLDRCEL-TKLQVD-GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS 114
Query: 419 DIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNN 466
L L +L L+GN+L P + KLE L + N+
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 58/130 (44%), Gaps = 12/130 (9%)
Query: 332 TSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNN 391
T L ++ LD LT + G P L +DLS N + P L L+VS N
Sbjct: 55 TRLTQLNLDRCELTK--LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNR 111
Query: 392 ITG---GIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEI 448
+T G R +G +LQ L L N++ P L + L KL L NQLT LP
Sbjct: 112 LTSLPLGALRGLG---ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA-- 165
Query: 449 GSLIKLEYLD 458
G L LE LD
Sbjct: 166 GLLNGLENLD 175
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 9/168 (5%)
Query: 302 HDICRGG--ALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEA-LGIYPNL 358
H IC A + + + R +P L T+++ + NL S A L Y L
Sbjct: 1 HPICEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHL---SENLLYTFSLATLMPYTRL 57
Query: 359 TFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVG 418
T ++L R ++ + G P LGTL++S N + +P L LD+S N++
Sbjct: 58 TQLNLDRCEL-TKLQVD-GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS 114
Query: 419 DIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNN 466
L L +L L+GN+L P + KLE L + N+
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 58/130 (44%), Gaps = 12/130 (9%)
Query: 332 TSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNN 391
T L ++ LD LT + G P L +DLS N + P L L+VS N
Sbjct: 55 TRLTQLNLDRCELTK--LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNR 111
Query: 392 ITG---GIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEI 448
+T G R +G +LQ L L N++ P L + L KL L NQLT LP
Sbjct: 112 LTSLPLGALRGLG---ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA-- 165
Query: 449 GSLIKLEYLD 458
G L LE LD
Sbjct: 166 GLLNGLENLD 175
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 523 LKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDN 558
LKSLE LNLSHNNL + F +H L + ++ N
Sbjct: 225 LKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 523 LKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDN 558
LKSLE LNLSHNNL + F +H L + ++ N
Sbjct: 225 LKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 54 FSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPL----ELSSIEELF 109
F L L L N L P +L+KL+Y+SL N+L +P +L+S++EL
Sbjct: 105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELR 163
Query: 110 LYSNHL 115
LY+N L
Sbjct: 164 LYNNQL 169
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 48 TLRDLSFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPL 100
TL F+SFP LE L+L+ N + P NL L + L SN+L IPL
Sbjct: 46 TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-KLIPL 97
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 11/111 (9%)
Query: 14 NVSSKISPCAWYGISCNDAGRVINISLRNTGLSGTLRDLSFSSFPQLEYLDLSLNGLFGT 73
N +KI A++G++ ++ ++L L G++ F + +LE LDLS N +
Sbjct: 309 NEINKIDDNAFWGLT-----HLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRAL 362
Query: 74 IPSQIGNLSKLSYISLDSNQLFGKIP----LELSSIEELFLYSNHLNESFP 120
L L ++LD+NQL +P L+S+++++L++N + S P
Sbjct: 363 GDQSFLGLPNLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 67/160 (41%), Gaps = 14/160 (8%)
Query: 316 DEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSN 375
D + F+G + ++ C L + + + + +L + L++N +I N
Sbjct: 265 DNFTFKGLEASGVKTCD------LSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NKIDDN 317
Query: 376 --WGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQI--VGDIPKELGKSNSLT 431
WG L LN+S N + R N +L+ LDLS N I +GD LG N L
Sbjct: 318 AFWG-LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD-QSFLGLPN-LK 374
Query: 432 KLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEI 471
+L L NQL L L+ + N ++ S P I
Sbjct: 375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 95/244 (38%), Gaps = 51/244 (20%)
Query: 349 SEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITG--GIPREIGNSSQL 406
EA GI P F ++ G + +C L V + G +P+++ + L
Sbjct: 1 DEASGIGPEEHFPEVPEIEPMGPVCPFRCQC----HLRVVQCSDLGLEKVPKDLPPDTAL 56
Query: 407 QALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNN 466
LDL N+I + +L LIL N+++ P L+KLE L S N+
Sbjct: 57 --LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113
Query: 467 SVPEIXXXXXXXXXXXXXXXQFVQELPKELEKLV--QLSLLDASHNLFGGEIPFQICSLK 524
+ +++PK L++L + + ++F G L
Sbjct: 114 --------------------ELPEKMPKTLQELRVHENEITKVRKSVFNG--------LN 145
Query: 525 SLEMLNLSHNNLSGS-IPN-CFDGMHGLSVIDISDNQL----QGPVPNSTAFRNAPVEAL 578
+ ++ L N L S I N F GM LS I I+D + QG P+ T L
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH------L 199
Query: 579 EGNK 582
+GNK
Sbjct: 200 DGNK 203
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 149 NLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLYKNLLIGSIPSSLGNLKLIDLKLSSN 208
NLK L L L NN++ P +F L L RL L KN L +P + L +L++ N
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMPK-TLQELRVHEN 131
Query: 209 QLT 211
++T
Sbjct: 132 EIT 134
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 63/166 (37%), Gaps = 26/166 (15%)
Query: 404 SQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANR 463
+++Q LDL+ + G +P + NSL KL+L N S L L N
Sbjct: 277 TRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGN- 334
Query: 464 FNNSVPEIXXXXXXXXXXXXXXXQFVQELPKELEKLVQLSLLDASHNLFGGE--IPFQIC 521
+ + + LEKL L LD SH+ Q+
Sbjct: 335 ----------------------MRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLK 372
Query: 522 SLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNS 567
+L+ L+ LNLS+N G F L ++D++ L P+S
Sbjct: 373 NLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHS 418
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 9/168 (5%)
Query: 302 HDICRGG--ALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEA-LGIYPNL 358
H IC A + + + R +P L T+++ + NL S A L Y L
Sbjct: 1 HPICEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHL---SENLLYTFSLATLMPYTRL 57
Query: 359 TFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVG 418
T ++L R ++ + G P LGTL++S N + +P L LD+S N++
Sbjct: 58 TQLNLDRCEL-TKLQVD-GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS 114
Query: 419 DIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNN 466
L L +L L+GN+L P + KLE L + N+
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 58/130 (44%), Gaps = 12/130 (9%)
Query: 332 TSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNN 391
T L ++ LD LT + G P L +DLS N + P L L+VS N
Sbjct: 55 TRLTQLNLDRCELTK--LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNR 111
Query: 392 ITG---GIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEI 448
+T G R +G +LQ L L N++ P L + L KL L NQLT LP
Sbjct: 112 LTSLPLGALRGLG---ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA-- 165
Query: 449 GSLIKLEYLD 458
G L LE LD
Sbjct: 166 GLLNGLENLD 175
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 9/168 (5%)
Query: 302 HDICRGG--ALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEA-LGIYPNL 358
H IC A + + + R +P L T+++ + NL S A L Y L
Sbjct: 1 HPICEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHL---SENLLYTFSLATLMPYTRL 57
Query: 359 TFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVG 418
T ++L R ++ + G P LGTL++S N + +P L LD+S N++
Sbjct: 58 TQLNLDRCEL-TKLQVD-GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS 114
Query: 419 DIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNN 466
L L +L L+GN+L P + KLE L + N+
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 58/130 (44%), Gaps = 12/130 (9%)
Query: 332 TSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNN 391
T L ++ LD LT + G P L +DLS N + P L L+VS N
Sbjct: 55 TRLTQLNLDRCELTK--LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNR 111
Query: 392 ITG---GIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEI 448
+T G R +G +LQ L L N++ P L + L KL L NQLT LP
Sbjct: 112 LTSLPLGALRGLG---ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA-- 165
Query: 449 GSLIKLEYLD 458
G L LE LD
Sbjct: 166 GLLNGLENLD 175
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 95/244 (38%), Gaps = 51/244 (20%)
Query: 349 SEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITG--GIPREIGNSSQL 406
EA GI P F ++ G + +C L V + G +P+++ + L
Sbjct: 1 DEASGIGPEEHFPEVPEIEPMGPVCPFRCQC----HLRVVQCSDLGLEKVPKDLPPDTAL 56
Query: 407 QALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNN 466
LDL N+I + +L LIL N+++ P L+KLE L S N+
Sbjct: 57 --LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113
Query: 467 SVPEIXXXXXXXXXXXXXXXQFVQELPKELEKLV--QLSLLDASHNLFGGEIPFQICSLK 524
+ +++PK L++L + + ++F G L
Sbjct: 114 --------------------ELPEKMPKTLQELRVHENEITKVRKSVFNG--------LN 145
Query: 525 SLEMLNLSHNNLSGS-IPN-CFDGMHGLSVIDISDNQL----QGPVPNSTAFRNAPVEAL 578
+ ++ L N L S I N F GM LS I I+D + QG P+ T L
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH------L 199
Query: 579 EGNK 582
+GNK
Sbjct: 200 DGNK 203
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 149 NLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLYKNLLIGSIPSSLGNLKLIDLKLSSN 208
NLK L L L NN++ P +F L L RL L KN L +P + L +L++ N
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMPK-TLQELRVHEN 131
Query: 209 QLT 211
++T
Sbjct: 132 EIT 134
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 522 SLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGP------VPNSTAFRNAPV 575
+L L++LN+SHNNL + ++ ++ LS +D S N+++ P S AF N
Sbjct: 490 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 549
Query: 576 EALEGNKGLCGGVKGMQPCK 595
++ +C K +Q K
Sbjct: 550 NSV---ACICEHQKFLQWVK 566
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 522 SLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGP------VPNSTAFRNAPV 575
+L L++LN+SHNNL + ++ ++ LS +D S N+++ P S AF N
Sbjct: 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554
Query: 576 EALEGNKGLCGGVKGMQPCK 595
++ +C K +Q K
Sbjct: 555 NSV---ACICEHQKFLQWVK 571
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 9/138 (6%)
Query: 281 LGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNC-----TSLI 335
LGNS+L L S N + P G L +++ + + L C TS+
Sbjct: 168 LGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKL--CWELSNTSIQ 225
Query: 336 RVRLDGNNLTGNISEALG--IYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNIT 393
+ L N L + NLT +DLS NN + + ++ P L L++ NNI
Sbjct: 226 NLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQ 285
Query: 394 GGIPREIGNSSQLQALDL 411
PR S L+ L L
Sbjct: 286 RLSPRSFYGLSNLRYLSL 303
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 493 PKELEKLVQLSLLDASHNLFGGEIPFQICS-LKSLEMLNLSHNNLSGSIPNCFDGMHGLS 551
P + QL++LDA N P ++C L L++LNL HN LS F L+
Sbjct: 42 PTNFTRYSQLAILDAGFNSISKLEP-ELCQILPLLKVLNLQHNELSQISDQTFVFCTNLT 100
Query: 552 VIDISDNQLQ 561
+D+ N +
Sbjct: 101 ELDLMSNSIH 110
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 96/224 (42%), Gaps = 32/224 (14%)
Query: 4 PTLNTTNATTNVSSKISPCAWYGISCNDAGRVINISLRNTGLSGTLR------DLSFSSF 57
P+L + N ++SP ++YG+S R +++ T S +L D SF
Sbjct: 272 PSLRYLSLEYNNIQRLSPRSFYGLS---NLRYLSLKRAFTKQSVSLASHPNIDDFSFQWL 328
Query: 58 PQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLD---------SNQLFGKIPLELSSIEEL 108
LEYL++ N + T + L L Y+SL +N+ F + L S + L
Sbjct: 329 KYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETF--VSLAHSPLLTL 386
Query: 109 FLYSNHL----NESFPPFLGNLSNIVRLYXXXXXXXXXXXXXXGNLKFLFELDLSNNQLG 164
L NH+ N +F +LG L I+ L G L+ +FE+ LS N+
Sbjct: 387 NLTKNHISKIANGTF-SWLGQLR-ILDLGLNEIEQKLSGQEWRG-LRNIFEIYLSYNKYL 443
Query: 165 GSIPLSFGNLSNLARLCLY----KNLLIGSIP-SSLGNLKLIDL 203
SF + +L RL L KN+ I P L NL ++DL
Sbjct: 444 QLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDL 487
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 53 SFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPLELSS 104
SFS P L YL L N + P LS L Y+SL + F K + L+S
Sbjct: 267 SFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLK--RAFTKQSVSLAS 316
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 31 DAGRVINISLRNTGLSGTLRDLSFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLD 90
+A V L + + L+ + FS F LE L L+ N + + L+ L ++LD
Sbjct: 273 EASGVKTCDLSKSKIFALLKSV-FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALD 331
Query: 91 SNQLFGKIP----LELSSIEELFLYSNHLNESFP 120
+NQL +P L+S+++++L++N + S P
Sbjct: 332 TNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 364
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 9/164 (5%)
Query: 302 HDICRGG--ALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEA-LGIYPNL 358
H IC A + + + R +P L T+++ + NL S A L Y L
Sbjct: 1 HPICEVSKVASHLEVNCDKRDLTALPPDLPKDTTILHL---SENLLYTFSLATLMPYTRL 57
Query: 359 TFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVG 418
T ++L R ++ + G P LGTL++S N + +P L LD+S N++
Sbjct: 58 TQLNLDRCEL-TKLQVD-GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS 114
Query: 419 DIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSAN 462
L L +L L+GN+L P + KLE L + N
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
>pdb|2G6G|A Chain A, Crystal Structure Of Mlta From Neisseria Gonorrhoeae
Length = 422
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 54/136 (39%), Gaps = 26/136 (19%)
Query: 324 IPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLG 383
+P LR +L+R+R G N +G I A G + DLSR ++ G+
Sbjct: 152 LPAGLRGGKNLVRIRQTGKN-SGTIDNAGGTH----TADLSRFPITARTTAIKGRFEGSR 206
Query: 384 TLNV-SMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTG 442
L + N I GG ALD G P LG + +L Q +G
Sbjct: 207 FLPYHTRNQINGG------------ALD-------GKAPI-LGYAEDPVELFFXHIQGSG 246
Query: 443 RLPTEIGSLIKLEYLD 458
RL T G I++ Y D
Sbjct: 247 RLKTPSGKYIRIGYAD 262
>pdb|2H84|A Chain A, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
pdb|2H84|B Chain B, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
Length = 374
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 304 ICRGGALEIFI---VDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTF 360
I G +E F+ +D+ + Q + S ++C LI G ++ NI +LGI P T
Sbjct: 263 IVIGSGIEAFVDTLLDKAKLQTSTAISAKDCEFLIHT--GGKSILMNIENSLGIDPKQTK 320
Query: 361 IDLSRNNFYGEISS 374
+ YG +SS
Sbjct: 321 NTWDVYHAYGNMSS 334
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 9/164 (5%)
Query: 302 HDICRGG--ALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEA-LGIYPNL 358
H IC A + + + R +P L T+++ + NL S A L Y L
Sbjct: 1 HPICEVSKVASHLEVNCDKRDLTALPPDLPKDTTILHL---SENLLYTFSLATLMPYTRL 57
Query: 359 TFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVG 418
T ++L R ++ + G P LGTL++S N + +P L LD+S N++
Sbjct: 58 TQLNLDRCEL-TKLQVD-GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS 114
Query: 419 DIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSAN 462
L L +L L+GN+L P + KLE L + N
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 82/225 (36%), Gaps = 16/225 (7%)
Query: 352 LGIYPNLTFIDLSRNNFYGEISSNWG-------KCPKLGTLNVSMNNIT--GGIPREIGN 402
G +P L L R F +SN G P L L++S N ++ G +
Sbjct: 316 FGQFPTLKLKSLKRLTF----TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371
Query: 403 SSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIG-SLIKLEYLDFSA 461
++ L+ LDLS N ++ LG L L + + L + SL L YLD S
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430
Query: 462 NRFNNSVPEIXXXXXXXXXXXXXXXQFVQE-LPKELEKLVQLSLLDASHNLFGGEIPFQI 520
+ I F + LP +L L+ LD S P
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490
Query: 521 CSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVP 565
SL SL++LN++ N L FD + L I + N P
Sbjct: 491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 518 FQICSLKSLEMLNLSHNNL-SGSIPNCFDGMHGLSVIDISDNQLQG 562
F I LK+L+ LN++HN + S +P F + L +D+S N++Q
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 54 FSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIP----LELSSIEELF 109
F+ L +LDLS L P+ +LS L +++ SNQL +P L+S+++++
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL-KSVPDGIFDRLTSLQKIW 524
Query: 110 LYSNHLNESFP 120
L++N + S P
Sbjct: 525 LHTNPWDCSCP 535
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 9/164 (5%)
Query: 302 HDICRGG--ALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEA-LGIYPNL 358
H IC A + + + R +P L T+++ + NL S A L Y L
Sbjct: 1 HPICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHL---SENLLYTFSLATLMPYTRL 57
Query: 359 TFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVG 418
T ++L R ++ + G P LGTL++S N + +P L LD+S N++
Sbjct: 58 TQLNLDRAEL-TKLQVD-GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS 114
Query: 419 DIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSAN 462
L L +L L+GN+L P + KLE L + N
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 27/98 (27%)
Query: 489 VQELPKE--LEKLVQLSLLDASHN------LFGG---------------EIPFQICSL-K 524
++E P L+K V+L LLD HN FG EIP C+
Sbjct: 560 LEEFPASASLQKXVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTD 619
Query: 525 SLEMLNLSHNNLSGSIPNCFDG--MHGLSVIDISDNQL 560
+E L SHN L IPN F+ ++ +D S N++
Sbjct: 620 QVEGLGFSHNKLK-YIPNIFNAKSVYVXGSVDFSYNKI 656
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 103 SSIEELFLYSNHLNESFPPFLGNLSNIVRLYXXXXXXXXXXXXXXGNLKFLFELDLSNNQ 162
++ + L+LY N + + P L+ + RL L L +L L++NQ
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 163 LGGSIPL-SFGNLSNLARLCLYKN 185
L SIP +F NL +L + L N
Sbjct: 98 L-KSIPRGAFDNLKSLTHIWLLNN 120
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 518 FQICSLKSLEMLNLSHNNL-SGSIPNCFDGMHGLSVIDISDNQLQG 562
F I LK+L+ LN++HN + S +P F + L +D+S N++Q
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 64/152 (42%), Gaps = 26/152 (17%)
Query: 39 SLRNTGLS-GTLRDL---SFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQL 94
S +N LS LR L SF SFP+L+ LDLS + +LS LS + L N
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-- 86
Query: 95 FGKIPLELSSIEELFLYSNHLNESFPPFLGNLSNIVRLYXXXXXXXXXXXXXXGNLKFLF 154
I+ L L + LS++ +L G+LK L
Sbjct: 87 ---------PIQSLALGA----------FSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127
Query: 155 ELDLSNNQLGG-SIPLSFGNLSNLARLCLYKN 185
EL++++N + +P F NL+NL L L N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 518 FQICSLKSLEMLNLSHNNL-SGSIPNCFDGMHGLSVIDISDNQLQG 562
F I LK+L+ LN++HN + S +P F + L +D+S N++Q
Sbjct: 120 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 26/152 (17%)
Query: 39 SLRNTGLS-GTLRDL---SFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQL 94
S +N LS LR L SF SFP+L+ LDLS +I + +Y S
Sbjct: 31 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR--------CEIQTIEDGAYQS------ 76
Query: 95 FGKIPLELSSIEELFLYSNHLNESFPPFLGNLSNIVRLYXXXXXXXXXXXXXXGNLKFLF 154
LS + L L N + LS++ +L G+LK L
Sbjct: 77 -------LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLK 129
Query: 155 ELDLSNNQLGG-SIPLSFGNLSNLARLCLYKN 185
EL++++N + +P F NL+NL L L N
Sbjct: 130 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 518 FQICSLKSLEMLNLSHNNL-SGSIPNCFDGMHGLSVIDISDNQLQG 562
F I LK+L+ LN++HN + S +P F + L +D+S N++Q
Sbjct: 119 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 26/152 (17%)
Query: 39 SLRNTGLSGT-LRDL---SFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQL 94
S +N LS LR L SF SFP+L+ LDLS +I + +Y S
Sbjct: 30 STKNLDLSWNPLRHLGSYSFFSFPELQVLDLSR--------CEIQTIEDGAYQS------ 75
Query: 95 FGKIPLELSSIEELFLYSNHLNESFPPFLGNLSNIVRLYXXXXXXXXXXXXXXGNLKFLF 154
LS + L L N + LS++ +L G+LK L
Sbjct: 76 -------LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 128
Query: 155 ELDLSNNQLGG-SIPLSFGNLSNLARLCLYKN 185
EL++++N + +P F NL+NL L L N
Sbjct: 129 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 9/164 (5%)
Query: 302 HDICRGG--ALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEA-LGIYPNL 358
H IC A + + + R +P L T+++ + NL S A L Y L
Sbjct: 1 HPICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHL---SENLLYTFSLATLMPYTRL 57
Query: 359 TFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVG 418
T ++L R ++ + G P LGTL++S N + +P L LD+S N++
Sbjct: 58 TQLNLDRAEL-TKLQVD-GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS 114
Query: 419 DIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSAN 462
L L +L L+GN+L P + KLE L + N
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 76/189 (40%), Gaps = 34/189 (17%)
Query: 2 GSPTLNTTNATTNVSSKISPCAWYGISCNDAGRVINISLRNTGLS-GTLRDL---SFSSF 57
GSP + N++ + +Y I N + S +N LS LR L SF SF
Sbjct: 1 GSPCVE---VVPNITYQCEELNFYKIPDN-----LPFSTKNLDLSFNPLRHLGSYSFFSF 52
Query: 58 PQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPLELSSIEELFLYSNHLNE 117
P+L+ LDLS +I + +Y S LS + L L N +
Sbjct: 53 PELQVLDLSR--------CEIQTIEDGAYQS-------------LSHLSTLILTGNPIQS 91
Query: 118 SFPPFLGNLSNIVRLYXXXXXXXXXXXXXXGNLKFLFELDLSNNQLGG-SIPLSFGNLSN 176
LS++ +L G+LK L EL++++N + +P F NL+N
Sbjct: 92 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 151
Query: 177 LARLCLYKN 185
L L L N
Sbjct: 152 LEHLDLSSN 160
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 518 FQICSLKSLEMLNLSHNNL-SGSIPNCFDGMHGLSVIDISDNQLQG 562
F I LK+L+ LN++HN + S +P F + L +D+S N++Q
Sbjct: 119 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 518 FQICSLKSLEMLNLSHNNL-SGSIPNCFDGMHGLSVIDISDNQLQG 562
F I LK+L+ LN++HN + S +P F + L +D+S N++Q
Sbjct: 120 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 26/152 (17%)
Query: 39 SLRNTGLSGT-LRDL---SFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQL 94
S +N LS LR L SF SFP+L+ LDLS +I + +Y S
Sbjct: 31 STKNLDLSWNPLRHLGSYSFFSFPELQVLDLSR--------CEIQTIEDGAYQS------ 76
Query: 95 FGKIPLELSSIEELFLYSNHLNESFPPFLGNLSNIVRLYXXXXXXXXXXXXXXGNLKFLF 154
LS + L L N + LS++ +L G+LK L
Sbjct: 77 -------LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 129
Query: 155 ELDLSNNQLGG-SIPLSFGNLSNLARLCLYKN 185
EL++++N + +P F NL+NL L L N
Sbjct: 130 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
>pdb|2G5D|A Chain A, Crystal Structure Of Mlta From Neisseria Gonorrhoeae
Monoclinic Form
Length = 422
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 54/136 (39%), Gaps = 26/136 (19%)
Query: 324 IPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLG 383
+P LR +L+R+R G N +G I A G + DLSR ++ G+
Sbjct: 152 LPAGLRGGKNLVRIRQTGKN-SGTIDNAGGTH----TADLSRFPITARTTAIKGRFEGSR 206
Query: 384 TLNV-SMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTG 442
L + N I GG ALD G P LG + +L Q +G
Sbjct: 207 FLPYHTRNQINGG------------ALD-------GKAPI-LGYAEDPVELFFMHIQGSG 246
Query: 443 RLPTEIGSLIKLEYLD 458
RL T G I++ Y D
Sbjct: 247 RLKTPSGKYIRIGYAD 262
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 9/164 (5%)
Query: 302 HDICRGG--ALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEA-LGIYPNL 358
H IC A + + + R +P L T+++ + NL S A L Y L
Sbjct: 1 HPICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHL---SENLLYTFSLATLMPYTRL 57
Query: 359 TFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVG 418
T ++L R ++ + G P LGTL++S N + +P L LD+S N++
Sbjct: 58 TQLNLDRAEL-TKLQVD-GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS 114
Query: 419 DIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSAN 462
L L +L L+GN+L P + KLE L + N
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 103 SSIEELFLYSNHLNESFPPFLGNLSNIVRLYXXXXXXXXXXXXXXGNLKFLFELDLSNNQ 162
++ + L+LY N + + P L+ + RL L L +L L++NQ
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 163 LGGSIPL-SFGNLSNLARLCLYKN 185
L SIP +F NL +L + L N
Sbjct: 90 L-KSIPRGAFDNLKSLTHIWLLNN 112
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 151 KFLFELDLSNNQLGGSIPLSFGNLSNLARLCLYKNLLIGSIPSSL 195
K L +DLSNNQ+ P +F L +L L LY N I +P SL
Sbjct: 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSL 99
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 91/225 (40%), Gaps = 26/225 (11%)
Query: 158 LSNNQLGGSIPLSFGNLSNLARLCLYKNLLIGSIPSSLGNLKLID-LKLSSN-QLTGYIP 215
L N++ SF NL L L+ N+L ++ L L++ L LS N QL P
Sbjct: 38 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 97
Query: 216 YSLGNVTXXXXXXXAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLERLGLMDNHLSG 275
+ + + L +L FRG L L+ L L DN L
Sbjct: 98 ATFHGLGRLHTLHLDRCGLQ-------ELGPGLFRG--------LAALQYLYLQDNALQ- 141
Query: 276 SIPPS----LGNSTLTWLTFSLNHFTGYLPHDICRG-GALEIFIVDEYRFQGTIPTSLRN 330
++P LGN LT L N + +P RG +L+ ++ + R P + R+
Sbjct: 142 ALPDDTFRDLGN--LTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 198
Query: 331 CTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSN 375
L+ + L NNL+ +EAL L ++ L+ N + + +
Sbjct: 199 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 243
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 91/225 (40%), Gaps = 26/225 (11%)
Query: 158 LSNNQLGGSIPLSFGNLSNLARLCLYKNLLIGSIPSSLGNLKLID-LKLSSN-QLTGYIP 215
L N++ SF NL L L+ N+L ++ L L++ L LS N QL P
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98
Query: 216 YSLGNVTXXXXXXXAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLERLGLMDNHLSG 275
+ + + L +L FRG L L+ L L DN L
Sbjct: 99 ATFHGLGRLHTLHLDRCGLQ-------ELGPGLFRG--------LAALQYLYLQDNALQ- 142
Query: 276 SIPPS----LGNSTLTWLTFSLNHFTGYLPHDICRG-GALEIFIVDEYRFQGTIPTSLRN 330
++P LGN LT L N + +P RG +L+ ++ + R P + R+
Sbjct: 143 ALPDDTFRDLGN--LTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199
Query: 331 CTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSN 375
L+ + L NNL+ +EAL L ++ L+ N + + +
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 151 KFLFELDLSNNQLGGSIPLSFGNLSNLARLCLYKNLLIGSIPSSL 195
K L +DLSNNQ+ P +F L +L L LY N I +P SL
Sbjct: 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSL 99
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 103 SSIEELFLYSNHLNESFPPFLGNLSNIVRLYXXXXXXXXXXXXXXGNLKFLFELDLSNNQ 162
++ + L+LY N + + P L+ + RL L L +L L++NQ
Sbjct: 30 TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 163 LGGSIPL-SFGNLSNLARLCLYKN 185
L SIP +F NL +L + L N
Sbjct: 90 L-KSIPRGAFDNLRSLTHIWLLNN 112
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 11/121 (9%)
Query: 4 PTLNTTNATTNVSSKISPCAWYGISCNDAGRVINISLRNTGLSGTLRDLSFSSFPQLEYL 63
P++ T +A N S++S C+ NI L N ++ LRDL +++YL
Sbjct: 99 PSIETLHAANNNISRVS--------CSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYL 149
Query: 64 DLSLNGLFGTIPSQIGNLSK-LSYISLDSNQLFG-KIPLELSSIEELFLYSNHLNESFPP 121
DL LN + +++ S L +++L N ++ K + + ++ L L SN L P
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE 209
Query: 122 F 122
F
Sbjct: 210 F 210
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 378 KCPKLGTLNVSMNNITGGIPREI-----GNSSQLQALDLSLNQIVGDIPKELGKSNSLTK 432
+C +L+ + + G R G ++ +++LDLS N+I +L +L
Sbjct: 21 RCSAQESLSCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQV 80
Query: 433 LILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNN 466
LIL+ +++ SL LE+LD S N ++
Sbjct: 81 LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS 114
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 5/134 (3%)
Query: 378 KCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRG 437
+C GT + +P I ++Q+ L L NQI P +L +L L
Sbjct: 16 QCSCSGTTVDCRSKRHASVPAGIPTNAQI--LYLHDNQITKLEPGVFDSLINLKELYLGS 73
Query: 438 NQLTGRLPTEI-GSLIKLEYLDFSANRFNNSVPEIXXXXXXXXXXXXXXXQFVQELPKEL 496
NQL G LP + SL +L LD N+ +P + ELP+ +
Sbjct: 74 NQL-GALPVGVFDSLTQLTVLDLGTNQL-TVLPSAVFDRLVHLKELFMCCNKLTELPRGI 131
Query: 497 EKLVQLSLLDASHN 510
E+L L+ L N
Sbjct: 132 ERLTHLTHLALDQN 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,265,713
Number of Sequences: 62578
Number of extensions: 699385
Number of successful extensions: 2124
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 1294
Number of HSP's gapped (non-prelim): 528
length of query: 620
length of database: 14,973,337
effective HSP length: 105
effective length of query: 515
effective length of database: 8,402,647
effective search space: 4327363205
effective search space used: 4327363205
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)