Query 043685
Match_columns 620
No_of_seqs 414 out of 3987
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 07:21:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043685.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043685hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.9E-66 8.5E-71 593.2 40.6 564 15-595 51-620 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.4E-56 5.2E-61 512.3 35.1 513 57-587 68-587 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.2E-39 4.8E-44 316.1 6.2 392 154-562 55-453 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.1E-38 4.6E-43 309.2 7.1 387 130-533 55-448 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 4E-40 8.6E-45 307.7 -16.9 472 35-561 47-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 2.9E-38 6.3E-43 295.3 -14.3 477 56-584 43-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 9.3E-35 2E-39 298.7 -6.4 420 103-561 68-489 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.1E-33 2.4E-38 290.8 -6.0 485 34-558 22-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 6E-33 1.3E-37 273.1 -4.3 362 129-537 9-375 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 6.7E-32 1.4E-36 265.8 -5.2 366 174-584 6-375 (1255)
11 PLN03210 Resistant to P. syrin 99.9 7.2E-22 1.6E-26 227.4 31.0 286 126-462 610-903 (1153)
12 PLN03210 Resistant to P. syrin 99.9 3.8E-22 8.3E-27 229.7 27.0 340 167-535 550-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 5.7E-26 1.2E-30 212.9 -5.0 406 97-558 60-498 (498)
14 KOG4237 Extracellular matrix p 99.9 2.9E-24 6.2E-29 201.6 -4.7 277 311-587 70-362 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 1.7E-18 3.6E-23 185.3 17.2 260 263-565 203-462 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 4.5E-18 9.8E-23 182.0 16.8 204 308-544 262-465 (788)
17 cd00116 LRR_RI Leucine-rich re 99.8 1.5E-19 3.3E-24 181.4 1.7 258 326-583 17-319 (319)
18 cd00116 LRR_RI Leucine-rich re 99.7 2.6E-19 5.7E-24 179.7 2.2 256 305-560 20-319 (319)
19 PRK15370 E3 ubiquitin-protein 99.7 1.4E-17 3E-22 179.5 12.1 246 285-561 179-428 (754)
20 PRK15370 E3 ubiquitin-protein 99.7 4.7E-17 1E-21 175.4 13.5 247 261-537 178-428 (754)
21 KOG0617 Ras suppressor protein 99.7 2.8E-19 6E-24 149.1 -5.2 183 376-564 29-215 (264)
22 KOG0617 Ras suppressor protein 99.7 7.7E-19 1.7E-23 146.4 -5.4 181 400-585 29-213 (264)
23 PLN03150 hypothetical protein; 99.2 1.3E-11 2.9E-16 133.1 8.8 118 477-595 419-538 (623)
24 KOG0532 Leucine-rich repeat (L 99.2 6.3E-13 1.4E-17 131.7 -3.3 195 355-559 74-271 (722)
25 KOG1909 Ran GTPase-activating 99.2 2.3E-12 4.9E-17 120.6 -0.7 184 377-560 89-310 (382)
26 KOG1259 Nischarin, modulator o 99.2 8.3E-12 1.8E-16 114.2 2.7 131 428-564 284-415 (490)
27 KOG0532 Leucine-rich repeat (L 99.2 1.7E-12 3.6E-17 128.8 -3.5 177 378-563 73-249 (722)
28 KOG3207 Beta-tubulin folding c 99.2 1.3E-11 2.9E-16 118.7 2.7 211 354-564 119-342 (505)
29 COG4886 Leucine-rich repeat (L 99.1 9.9E-11 2.2E-15 120.9 8.1 198 336-542 97-295 (394)
30 PF14580 LRR_9: Leucine-rich r 99.1 6.9E-11 1.5E-15 104.1 5.8 124 427-554 18-146 (175)
31 PLN03150 hypothetical protein; 99.1 2.2E-10 4.7E-15 123.7 10.7 118 23-162 403-526 (623)
32 KOG1909 Ran GTPase-activating 99.1 8.3E-12 1.8E-16 116.9 -0.5 232 305-536 27-310 (382)
33 KOG1259 Nischarin, modulator o 99.1 1.6E-11 3.4E-16 112.4 1.2 200 376-584 210-412 (490)
34 COG4886 Leucine-rich repeat (L 99.1 1.4E-10 3E-15 119.8 7.3 176 380-563 116-292 (394)
35 KOG3207 Beta-tubulin folding c 99.1 1.5E-11 3.3E-16 118.4 -0.7 208 330-537 119-339 (505)
36 PF14580 LRR_9: Leucine-rich r 99.0 3.8E-10 8.2E-15 99.4 5.7 125 378-507 17-147 (175)
37 KOG4658 Apoptotic ATPase [Sign 98.9 5.7E-10 1.2E-14 123.0 4.1 123 58-183 523-650 (889)
38 KOG4658 Apoptotic ATPase [Sign 98.9 5.8E-10 1.3E-14 123.0 3.8 176 58-235 545-730 (889)
39 PF13855 LRR_8: Leucine rich r 98.9 8.5E-10 1.8E-14 79.8 3.1 61 500-560 1-61 (61)
40 KOG0531 Protein phosphatase 1, 98.9 2.2E-10 4.8E-15 118.3 -1.3 246 306-565 70-322 (414)
41 KOG0531 Protein phosphatase 1, 98.8 4.3E-10 9.3E-15 116.2 -1.2 241 330-584 70-318 (414)
42 KOG1859 Leucine-rich repeat pr 98.8 2.3E-10 4.9E-15 116.9 -4.7 198 379-586 83-294 (1096)
43 PF13855 LRR_8: Leucine rich r 98.8 3.6E-09 7.8E-14 76.5 2.3 61 476-536 1-61 (61)
44 KOG1859 Leucine-rich repeat pr 98.6 5.3E-10 1.2E-14 114.2 -9.3 101 406-512 166-266 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.4 5.1E-09 1.1E-13 96.2 -6.2 107 333-439 186-297 (419)
46 KOG4579 Leucine-rich repeat (L 98.4 4.1E-08 9E-13 79.7 -1.2 135 453-590 28-165 (177)
47 KOG2982 Uncharacterized conser 98.4 9.8E-08 2.1E-12 87.9 0.7 183 331-513 70-262 (418)
48 KOG2120 SCF ubiquitin ligase, 98.3 2E-08 4.4E-13 92.3 -4.3 157 400-558 206-373 (419)
49 KOG2982 Uncharacterized conser 98.2 2.9E-07 6.4E-12 84.8 0.1 226 331-556 44-287 (418)
50 COG5238 RNA1 Ran GTPase-activa 98.1 1.7E-06 3.6E-11 78.9 3.6 217 331-562 29-286 (388)
51 KOG4579 Leucine-rich repeat (L 98.0 3.3E-07 7.1E-12 74.6 -2.6 133 430-566 29-164 (177)
52 COG5238 RNA1 Ran GTPase-activa 98.0 1.1E-06 2.5E-11 80.0 -0.5 208 307-514 29-286 (388)
53 KOG1644 U2-associated snRNP A' 98.0 1.4E-05 3.1E-10 69.9 5.7 106 453-560 43-152 (233)
54 PF12799 LRR_4: Leucine Rich r 97.8 2.5E-05 5.3E-10 51.5 3.5 35 502-537 3-37 (44)
55 PF12799 LRR_4: Leucine Rich r 97.8 2.1E-05 4.5E-10 51.8 2.8 39 524-563 1-39 (44)
56 KOG1644 U2-associated snRNP A' 97.7 4.1E-05 8.9E-10 67.1 4.7 103 476-580 42-149 (233)
57 PF13306 LRR_5: Leucine rich r 97.7 0.00012 2.6E-09 62.2 7.2 13 448-460 77-89 (129)
58 PF13306 LRR_5: Leucine rich r 97.7 0.00016 3.5E-09 61.4 7.8 105 328-437 8-112 (129)
59 PRK15386 type III secretion pr 97.6 0.00024 5.2E-09 70.9 9.2 136 400-559 48-188 (426)
60 KOG3665 ZYG-1-like serine/thre 97.6 2.9E-05 6.4E-10 84.1 2.5 129 82-212 122-264 (699)
61 PRK15386 type III secretion pr 97.6 0.00026 5.6E-09 70.7 8.2 157 376-558 48-210 (426)
62 KOG3665 ZYG-1-like serine/thre 97.5 6.7E-05 1.4E-09 81.4 3.1 134 404-539 122-265 (699)
63 KOG4341 F-box protein containi 97.4 3.2E-06 7E-11 81.9 -6.8 258 305-562 161-440 (483)
64 KOG4341 F-box protein containi 97.2 6E-06 1.3E-10 80.0 -7.1 208 329-536 213-438 (483)
65 KOG2739 Leucine-rich acidic nu 97.1 0.00023 5E-09 65.3 1.9 110 421-532 36-151 (260)
66 KOG2123 Uncharacterized conser 97.1 3.2E-05 7E-10 71.0 -3.7 80 454-537 21-101 (388)
67 KOG2739 Leucine-rich acidic nu 97.1 0.00032 7E-09 64.4 2.4 113 396-510 35-153 (260)
68 KOG1947 Leucine rich repeat pr 96.5 0.00024 5.3E-09 75.6 -3.1 16 472-487 358-373 (482)
69 KOG2123 Uncharacterized conser 96.2 0.00042 9.1E-09 63.9 -2.9 100 403-506 18-123 (388)
70 KOG1947 Leucine rich repeat pr 96.0 0.0011 2.3E-08 70.8 -1.5 173 331-513 187-375 (482)
71 KOG4308 LRR-containing protein 94.4 0.00031 6.7E-09 72.9 -11.5 181 357-537 88-303 (478)
72 KOG4308 LRR-containing protein 94.0 0.00049 1.1E-08 71.5 -10.9 181 310-490 89-304 (478)
73 PF00560 LRR_1: Leucine Rich R 93.9 0.024 5.2E-07 30.8 0.7 12 526-537 2-13 (22)
74 PF00560 LRR_1: Leucine Rich R 93.6 0.031 6.8E-07 30.4 0.8 12 129-140 2-13 (22)
75 KOG3864 Uncharacterized conser 92.7 0.039 8.5E-07 49.0 0.5 81 453-533 102-185 (221)
76 KOG3864 Uncharacterized conser 90.6 0.032 6.8E-07 49.5 -2.3 78 60-137 103-186 (221)
77 PF13504 LRR_7: Leucine rich r 90.4 0.19 4.1E-06 25.3 1.4 13 549-561 2-14 (17)
78 smart00370 LRR Leucine-rich re 89.5 0.3 6.5E-06 27.7 1.9 16 524-539 2-17 (26)
79 smart00369 LRR_TYP Leucine-ric 89.5 0.3 6.5E-06 27.7 1.9 16 524-539 2-17 (26)
80 smart00370 LRR Leucine-rich re 87.7 0.49 1.1E-05 26.8 2.0 22 499-520 1-22 (26)
81 smart00369 LRR_TYP Leucine-ric 87.7 0.49 1.1E-05 26.8 2.0 22 499-520 1-22 (26)
82 KOG0473 Leucine-rich repeat pr 87.6 0.0096 2.1E-07 53.7 -7.7 65 121-187 59-123 (326)
83 KOG0473 Leucine-rich repeat pr 85.7 0.029 6.4E-07 50.7 -5.7 83 475-560 41-123 (326)
84 PF13516 LRR_6: Leucine Rich r 83.5 0.51 1.1E-05 26.1 0.7 15 452-466 2-16 (24)
85 TIGR00864 PCC polycystin catio 77.2 1.1 2.3E-05 55.5 1.2 38 530-567 1-38 (2740)
86 KOG4242 Predicted myosin-I-bin 76.6 12 0.00025 38.4 7.9 107 81-187 164-280 (553)
87 PF08263 LRRNT_2: Leucine rich 75.8 1.5 3.3E-05 28.4 1.2 13 18-30 31-43 (43)
88 smart00365 LRR_SD22 Leucine-ri 71.9 3.6 7.8E-05 23.4 1.9 13 525-537 3-15 (26)
89 smart00368 LRR_RI Leucine rich 64.1 5.9 0.00013 22.9 1.8 14 548-561 2-15 (28)
90 smart00364 LRR_BAC Leucine-ric 60.0 6.7 0.00015 22.2 1.4 12 526-537 4-15 (26)
91 KOG4242 Predicted myosin-I-bin 52.2 58 0.0013 33.6 7.4 17 357-373 166-182 (553)
92 TIGR00864 PCC polycystin catio 48.6 12 0.00027 46.9 2.7 32 506-537 1-32 (2740)
93 KOG3763 mRNA export factor TAP 47.6 13 0.00028 38.8 2.3 14 451-464 217-230 (585)
94 KOG3763 mRNA export factor TAP 45.9 11 0.00024 39.3 1.5 66 473-538 215-284 (585)
95 smart00367 LRR_CC Leucine-rich 39.5 20 0.00043 20.1 1.3 11 127-137 2-12 (26)
96 smart00082 LRRCT Leucine rich 21.1 44 0.00095 22.2 0.7 9 581-589 1-9 (51)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.9e-66 Score=593.16 Aligned_cols=564 Identities=37% Similarity=0.568 Sum_probs=526.4
Q ss_pred CCCCCCCccccceeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCCEEECCCCCCCCcCCcccc-CCCCCCEEECCCCC
Q 043685 15 VSSKISPCAWYGISCNDAGRVINISLRNTGLSGTLRDLSFSSFPQLEYLDLSLNGLFGTIPSQIG-NLSKLSYISLDSNQ 93 (620)
Q Consensus 15 ~~~~~~~c~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~i~~~~~~~l~-~l~~L~~L~L~~~~ 93 (620)
-..+.+||.|.|+.|...++|++|+++++.+.+.+ +..|..+++|++|++++|.+.+.+|..+. .+++|++|++++|+
T Consensus 51 w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~-~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~ 129 (968)
T PLN00113 51 WNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKI-SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN 129 (968)
T ss_pred CCCCCCCCcCcceecCCCCcEEEEEecCCCccccC-ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCc
Confidence 33467899999999987789999999999999887 77899999999999999999888887654 99999999999999
Q ss_pred CcccCCC-CCCCCcEEEccCCcCCCcCcccccCCCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCCCCCcCCCCcccC
Q 043685 94 LFGKIPL-ELSSIEELFLYSNHLNESFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSNNQLGGSIPLSFG 172 (620)
Q Consensus 94 i~~~~~~-~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~ 172 (620)
+.+.+|. .+++|++|++++|.+++..|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.
T Consensus 130 l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 209 (968)
T PLN00113 130 FTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG 209 (968)
T ss_pred cccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc
Confidence 9988775 679999999999999999999999999999999999999888999999999999999999999988999999
Q ss_pred CCCCCcEEEcccccccccCCCCCCcee-ecEEEccCCccccccCCCCCCCCCCCEEEccCCcCCCCCCCccccccccccc
Q 043685 173 NLSNLARLCLYKNLLIGSIPSSLGNLK-LIDLKLSSNQLTGYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRG 251 (620)
Q Consensus 173 ~l~~L~~L~l~~n~~~~~~~~~l~~l~-L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~ 251 (620)
++++|++|++++|.+.+..|..+..+. |++|++++|.+.+..|..+..+++|+.|++++|.+ .+
T Consensus 210 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l---------------~~ 274 (968)
T PLN00113 210 QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL---------------SG 274 (968)
T ss_pred CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee---------------ec
Confidence 999999999999999999999999988 99999999999999999999999999999999987 45
Q ss_pred cCCcccccCCCCCeeeccCCcCCCCCCCCCCC-CCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccc
Q 043685 252 FLPPFVGNLTNLERLGLMDNHLSGSIPPSLGN-STLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRN 330 (620)
Q Consensus 252 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 330 (620)
..|..+..+++|++|++++|.+.+..|..+.. ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..
T Consensus 275 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 354 (968)
T PLN00113 275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354 (968)
T ss_pred cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence 67778889999999999999999888887776 89999999999999999999999999999999999999999999999
Q ss_pred cCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEe
Q 043685 331 CTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALD 410 (620)
Q Consensus 331 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 410 (620)
+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..++.|+.|+
T Consensus 355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 434 (968)
T PLN00113 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434 (968)
T ss_pred CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence 99999999999999988888898999999999999999999999999999999999999999988898999999999999
Q ss_pred cCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcc
Q 043685 411 LSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQ 490 (620)
Q Consensus 411 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 490 (620)
+++|.+++..+..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++.+..|..+..+++|+.|++++|.+.+
T Consensus 435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 513 (968)
T PLN00113 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513 (968)
T ss_pred CcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCccee
Confidence 99999999888888899999999999999998887765 46899999999999999999999999999999999999999
Q ss_pred cchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCCccc
Q 043685 491 ELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNSTAF 570 (620)
Q Consensus 491 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 570 (620)
.+|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++.+|..+..+++|+.+++++|++.+.+|....+
T Consensus 514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~ 593 (968)
T PLN00113 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAF 593 (968)
T ss_pred eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCCCccccCCCCCCCCCCC--CCCCCC
Q 043685 571 RNAPVEALEGNKGLCGGVK--GMQPCK 595 (620)
Q Consensus 571 ~~l~~~~l~~Np~~C~~~~--~~~~c~ 595 (620)
..+....+.|||..|+... +.++|.
T Consensus 594 ~~~~~~~~~~n~~lc~~~~~~~~~~c~ 620 (968)
T PLN00113 594 LAINASAVAGNIDLCGGDTTSGLPPCK 620 (968)
T ss_pred cccChhhhcCCccccCCccccCCCCCc
Confidence 8888899999999998643 345674
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.4e-56 Score=512.28 Aligned_cols=513 Identities=37% Similarity=0.517 Sum_probs=479.2
Q ss_pred CCCCCEEECCCCCCCCcCCccccCCCCCCEEECCCCCCcccCCC----CCCCCcEEEccCCcCCCcCcccccCCCCCCEE
Q 043685 57 FPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPL----ELSSIEELFLYSNHLNESFPPFLGNLSNIVRL 132 (620)
Q Consensus 57 ~~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~----~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L 132 (620)
..+++.|++++|.+.+..+.+|..+++|++|+|++|.+.+.+|. .+.+|++|++++|.+++..|. +.+++|++|
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 45899999999999999999999999999999999999887775 568999999999999887774 568999999
Q ss_pred EccCCcCCcccCccCCCCCCCCEEeCCCCCCcCCCCcccCCCCCCcEEEcccccccccCCCCCCcee-ecEEEccCCccc
Q 043685 133 YINNNSLSSSIPTNIGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLYKNLLIGSIPSSLGNLK-LIDLKLSSNQLT 211 (620)
Q Consensus 133 ~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-L~~L~l~~~~~~ 211 (620)
++++|.+.+..|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.+++ |++|++++|.+.
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence 9999999988999999999999999999999988999999999999999999999999999999998 999999999999
Q ss_pred cccCCCCCCCCCCCEEEccCCcCCCCCCCccccccccccccCCcccccCCCCCeeeccCCcCCCCCCCCCCC-CCcCeEE
Q 043685 212 GYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLERLGLMDNHLSGSIPPSLGN-STLTWLT 290 (620)
Q Consensus 212 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~ 290 (620)
+..|..+..+++|++|++++|.+ .+..|..+.++++|+.|++++|.+.+..|..+.. .+|+.|+
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l---------------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 290 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNL---------------TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290 (968)
T ss_pred CcCChhHhcCCCCCEEECcCcee---------------ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEE
Confidence 99999999999999999999987 4567888999999999999999998888887776 8999999
Q ss_pred ecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccC
Q 043685 291 FSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYG 370 (620)
Q Consensus 291 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 370 (620)
+++|.+.+..|..+..+++|+.|++.+|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+
T Consensus 291 Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 291 LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred CcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence 99999999999999999999999999999999999999999999999999999998888889999999999999999999
Q ss_pred ccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccC
Q 043685 371 EISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGS 450 (620)
Q Consensus 371 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 450 (620)
..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.++..+..
T Consensus 371 ~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 450 (968)
T PLN00113 371 EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD 450 (968)
T ss_pred eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhcc
Confidence 99999999999999999999999889999999999999999999999999999999999999999999999888888889
Q ss_pred CCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEE
Q 043685 451 LIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLN 530 (620)
Q Consensus 451 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 530 (620)
+++|++|++++|.+.+..|..+ ..++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..|..+..+++|+.|+
T Consensus 451 l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 529 (968)
T PLN00113 451 MPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD 529 (968)
T ss_pred CCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEE
Confidence 9999999999999988877765 468999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCccccCccccCCCCCCEEEccCCcCccCCCCC-cccCCCCccccCCCCCCCCC
Q 043685 531 LSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKGLCGG 587 (620)
Q Consensus 531 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~l~~Np~~C~~ 587 (620)
+++|.+++.+|..|..+++|+.||+++|++++.+|.. ..+++++.+++.+|++.+..
T Consensus 530 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~ 587 (968)
T PLN00113 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587 (968)
T ss_pred CCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeC
Confidence 9999999999999999999999999999999988865 34778999999999987743
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-39 Score=316.05 Aligned_cols=392 Identities=22% Similarity=0.194 Sum_probs=280.3
Q ss_pred CEEeCCCCCCcCCCCcccCCC--CCCcEEEcccccccccCCCCCCcee-ecEEEccCCccccccCCCCCCCCCCCEEEcc
Q 043685 154 FELDLSNNQLGGSIPLSFGNL--SNLARLCLYKNLLIGSIPSSLGNLK-LIDLKLSSNQLTGYIPYSLGNVTSLSSLLLA 230 (620)
Q Consensus 154 ~~L~l~~~~l~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~l~~l~-L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 230 (620)
+.|+.++..+.......+... ..-+.|++++|++....+..|.++. |+++++..|.++ .+|...+...+|+.|++.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLR 133 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeee
Confidence 456777776664433334332 2345688888888877777788887 888888888887 556555566668888888
Q ss_pred CCcCCCCCCCccccccccccccCCcccccCCCCCeeeccCCcCCCCCCCCCCC-CCcCeEEecCCcccccCCCCccCCCC
Q 043685 231 KNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLERLGLMDNHLSGSIPPSLGN-STLTWLTFSLNHFTGYLPHDICRGGA 309 (620)
Q Consensus 231 ~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~ 309 (620)
+|.++ ..-.+.+..++.|+.|||+.|.+++.....+.. .++++|+++.|.++..-...|..+.+
T Consensus 134 ~N~I~---------------sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lns 198 (873)
T KOG4194|consen 134 HNLIS---------------SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNS 198 (873)
T ss_pred ccccc---------------cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccch
Confidence 88773 445566777888888888888888666666666 78888888888888777777777777
Q ss_pred ccEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCC
Q 043685 310 LEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSM 389 (620)
Q Consensus 310 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 389 (620)
|..|.++.|+++...+..|.++++|+.|++..|++.....-.|..+++|+.|.+..|.+.......|.++.++++|+++.
T Consensus 199 L~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~ 278 (873)
T KOG4194|consen 199 LLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET 278 (873)
T ss_pred heeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc
Confidence 77777777777765556677777777777777777655556677777777777777777766667777777777777777
Q ss_pred CccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchh
Q 043685 390 NNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVP 469 (620)
Q Consensus 390 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 469 (620)
|++...-..++.+++.|+.|++++|.|..+.++....+++|++|+++.|+++..-+..|..+..|++|++++|++...-.
T Consensus 279 N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e 358 (873)
T KOG4194|consen 279 NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE 358 (873)
T ss_pred chhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh
Confidence 77776666667777777777777777776666677777777777777777776666667777777777777777766666
Q ss_pred hhhhCCCCCCEecCcCCcCcccc---hhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccC
Q 043685 470 EILGNLLKLHYLGLSNNQFVQEL---PKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDG 546 (620)
Q Consensus 470 ~~l~~l~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 546 (620)
..|..+.+|++|+|++|.+...+ ...|.++++|+.|++.+|+++.+...+|.+++.|+.|||.+|.|..+.|++|..
T Consensus 359 ~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~ 438 (873)
T KOG4194|consen 359 GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP 438 (873)
T ss_pred hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccccc
Confidence 66777777777777777665433 234666777777777777777666677777777777777777777777777766
Q ss_pred CCCCCEEEccCCcCcc
Q 043685 547 MHGLSVIDISDNQLQG 562 (620)
Q Consensus 547 l~~L~~L~l~~N~l~~ 562 (620)
+ .|++|-+..-.+.+
T Consensus 439 m-~Lk~Lv~nSssflC 453 (873)
T KOG4194|consen 439 M-ELKELVMNSSSFLC 453 (873)
T ss_pred c-hhhhhhhcccceEE
Confidence 6 67766665444433
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-38 Score=309.20 Aligned_cols=387 Identities=22% Similarity=0.195 Sum_probs=265.5
Q ss_pred CEEEccCCcCCcccCccCCCCC--CCCEEeCCCCCCcCCCCcccCCCCCCcEEEcccccccccCCCCCCcee-ecEEEcc
Q 043685 130 VRLYINNNSLSSSIPTNIGNLK--FLFELDLSNNQLGGSIPLSFGNLSNLARLCLYKNLLIGSIPSSLGNLK-LIDLKLS 206 (620)
Q Consensus 130 ~~L~Ls~n~~~~~~~~~~~~l~--~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-L~~L~l~ 206 (620)
+.|+.+++.+....-+.+...- .-+.|++++|.+....+..|.++++|+.+++..|.++ .+|....... +++|+|.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLR 133 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeee
Confidence 4566666665533222233222 2345777777777777777777777777777777776 4555554444 7777777
Q ss_pred CCccccccCCCCCCCCCCCEEEccCCcCCCCCCCccccccccccccCCcccccCCCCCeeeccCCcCCCCCCCCCCC-CC
Q 043685 207 SNQLTGYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLERLGLMDNHLSGSIPPSLGN-ST 285 (620)
Q Consensus 207 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~ 285 (620)
+|.|+..-.+.++.++.|+.||++.|.++ ......|..-.++++|+|++|+|+......|.. .+
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is---------------~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lns 198 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLIS---------------EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNS 198 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhh---------------cccCCCCCCCCCceEEeeccccccccccccccccch
Confidence 77777666666777777777777777663 233344555567777777777777666666655 67
Q ss_pred cCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCC
Q 043685 286 LTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSR 365 (620)
Q Consensus 286 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 365 (620)
|..|.++.|.++...+..|..+++|+.|++..|++.-.-...|.++++|+.|.+..|.+.....++|..+.++++|+|..
T Consensus 199 L~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~ 278 (873)
T KOG4194|consen 199 LLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET 278 (873)
T ss_pred heeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc
Confidence 77777777777766666777777777777777776543345567777777777777777777777777777777777777
Q ss_pred CcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCC
Q 043685 366 NNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLP 445 (620)
Q Consensus 366 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 445 (620)
|++...-..++.++++|+.|+++.|.|..+.++....+++|++|++++|.++...+..|..+..|++|++++|++.....
T Consensus 279 N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e 358 (873)
T KOG4194|consen 279 NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE 358 (873)
T ss_pred chhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh
Confidence 77776666666777777777777777776666666667777777777777776667777777777777777777765555
Q ss_pred ccccCCCCCCEEEccCCcCCcch---hhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccC
Q 043685 446 TEIGSLIKLEYLDFSANRFNNSV---PEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICS 522 (620)
Q Consensus 446 ~~~~~~~~L~~L~ls~n~l~~~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 522 (620)
.+|..+++|++||+++|.+...+ ...|..+++|+.|.+.||++..+.-.+|.++++|+.|||.+|.|..+.+.+|..
T Consensus 359 ~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~ 438 (873)
T KOG4194|consen 359 GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP 438 (873)
T ss_pred hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccccc
Confidence 56777777777777777765432 344666777777777777776555567777777777777777777777777777
Q ss_pred CCCCCEEECCC
Q 043685 523 LKSLEMLNLSH 533 (620)
Q Consensus 523 l~~L~~L~l~~ 533 (620)
+ .|++|.+..
T Consensus 439 m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 439 M-ELKELVMNS 448 (873)
T ss_pred c-hhhhhhhcc
Confidence 6 777776543
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4e-40 Score=307.73 Aligned_cols=472 Identities=29% Similarity=0.409 Sum_probs=331.5
Q ss_pred EEEEEcCCCCCccccCCCCCCCCCCCCEEECCCCCCCCcCCccccCCCCCCEEECCCCCCcccCCCCCCCCcEEEccCCc
Q 043685 35 VINISLRNTGLSGTLRDLSFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPLELSSIEELFLYSNH 114 (620)
Q Consensus 35 l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~l~~L~~L~ls~~~ 114 (620)
++.+.++.|.+... ..++..+..+.+|++++|... ..|.+++.+..++.|+.++|+++
T Consensus 47 l~~lils~N~l~~l--~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls------------------- 104 (565)
T KOG0472|consen 47 LQKLILSHNDLEVL--REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS------------------- 104 (565)
T ss_pred hhhhhhccCchhhc--cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-------------------
Confidence 56777777777644 467788888888888888876 56778888888888888888774
Q ss_pred CCCcCcccccCCCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCCCCCcCCCCcccCCCCCCcEEEcccccccccCCCC
Q 043685 115 LNESFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLYKNLLIGSIPSS 194 (620)
Q Consensus 115 ~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 194 (620)
.+|+.++.+.+|+.+++++|.+. .+++.++.+-.|+.++..+|++. ..|+++..+.+|..+++.+|++....|..
T Consensus 105 ---~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~ 179 (565)
T KOG0472|consen 105 ---ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENH 179 (565)
T ss_pred ---hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHH
Confidence 67888889999999999999887 78888999999999999999988 67888889999999999999888655555
Q ss_pred CCcee-ecEEEccCCccccccCCCCCCCCCCCEEEccCCcCCCCCCCccccccccccccCCcccccCCCCCeeeccCCcC
Q 043685 195 LGNLK-LIDLKLSSNQLTGYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLERLGLMDNHL 273 (620)
Q Consensus 195 l~~l~-L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~ 273 (620)
+. ++ |++++...|.++ .+|+.++.+.+|..|++..|++. ++| .|..|..|+++.++.|.+
T Consensus 180 i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~----------------~lP-ef~gcs~L~Elh~g~N~i 240 (565)
T KOG0472|consen 180 IA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR----------------FLP-EFPGCSLLKELHVGENQI 240 (565)
T ss_pred HH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc----------------cCC-CCCccHHHHHHHhcccHH
Confidence 55 66 899998888887 66778899999999999999874 455 778888888888888887
Q ss_pred CCCCCCCCCC--CCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCceeecCCCccccccCcc
Q 043685 274 SGSIPPSLGN--STLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEA 351 (620)
Q Consensus 274 ~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~ 351 (620)
. .+|..... .++..|++..|++. .+|..++.+.+|++|++++|.++ .+|..++++ .|+.|.+.||.+..+-.+.
T Consensus 241 ~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~i 316 (565)
T KOG0472|consen 241 E-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREI 316 (565)
T ss_pred H-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHH
Confidence 6 55555443 78888888888887 66788888888888888888887 677888888 8888888888775322111
Q ss_pred cC-----CCCCCCE----EECCCCcccC----c-cCc---cccCCCCCcEEECCCCccccCCCccccCC--CCCCEEecC
Q 043685 352 LG-----IYPNLTF----IDLSRNNFYG----E-ISS---NWGKCPKLGTLNVSMNNITGGIPREIGNS--SQLQALDLS 412 (620)
Q Consensus 352 ~~-----~l~~L~~----L~l~~n~l~~----~-~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~ 412 (620)
+. -++.|+. =.++..+-.. . .+. ....+.+.+.|++++-+++....+.|... .-...++++
T Consensus 317 i~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfs 396 (565)
T KOG0472|consen 317 ISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFS 396 (565)
T ss_pred HcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecc
Confidence 11 1111211 0011110000 0 011 11234456667777766663322223221 125667777
Q ss_pred CCeecccCChhhhccCCCcEEE-ccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCccc
Q 043685 413 LNQIVGDIPKELGKSNSLTKLI-LRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQE 491 (620)
Q Consensus 413 ~n~~~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 491 (620)
.|++. ..|..+..+..+.+.- ++.|.+ +.+|..+..+++|..|++++|.+. .+|..++.+..|+.|+++.|++ ..
T Consensus 397 kNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrF-r~ 472 (565)
T KOG0472|consen 397 KNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRF-RM 472 (565)
T ss_pred cchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccccc-cc
Confidence 77776 5666665555444333 333444 366666777777777777777665 4555566666677777777777 46
Q ss_pred chhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCc
Q 043685 492 LPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQ 561 (620)
Q Consensus 492 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 561 (620)
+|+++..+..++.+-.++|++....+..+.++.+|..||+.+|.+. .+|..++++.+|++|++++|++.
T Consensus 473 lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 473 LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 6777766667777777777777666666777777777777777776 45556777777777777777776
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.9e-38 Score=295.28 Aligned_cols=477 Identities=29% Similarity=0.371 Sum_probs=363.9
Q ss_pred CCCCCCEEECCCCCCCCcCCccccCCCCCCEEECCCCCCcccCCCCCCCCcEEEccCCcCCCcCcccccCCCCCCEEEcc
Q 043685 56 SFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPLELSSIEELFLYSNHLNESFPPFLGNLSNIVRLYIN 135 (620)
Q Consensus 56 ~~~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~Ls 135 (620)
.-..++.+++++|.+. ...+.+.++..|.+|++.+|++ ...|.+++.+..++.++.+
T Consensus 43 ~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l----------------------~~lp~aig~l~~l~~l~vs 99 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKL----------------------SQLPAAIGELEALKSLNVS 99 (565)
T ss_pred hhcchhhhhhccCchh-hccHhhhcccceeEEEeccchh----------------------hhCCHHHHHHHHHHHhhcc
Confidence 3344555555555553 3334455555555555555554 3578889999999999999
Q ss_pred CCcCCcccCccCCCCCCCCEEeCCCCCCcCCCCcccCCCCCCcEEEcccccccccCCCCCCcee-ecEEEccCCcccccc
Q 043685 136 NNSLSSSIPTNIGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLYKNLLIGSIPSSLGNLK-LIDLKLSSNQLTGYI 214 (620)
Q Consensus 136 ~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-L~~L~l~~~~~~~~~ 214 (620)
+|.+. .+|+.+..+..|+.+++++|.+. ..++.++.+..|+.++..+|++. ..|+.+.++. +..+++.+|.+....
T Consensus 100 ~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~ 176 (565)
T KOG0472|consen 100 HNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALP 176 (565)
T ss_pred cchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCC
Confidence 99998 89999999999999999999998 67888999999999999999988 5677777776 999999999999655
Q ss_pred CCCCCCCCCCCEEEccCCcCCCCCCCccccccccccccCCcccccCCCCCeeeccCCcCCCCCCCCCCCCCcCeEEecCC
Q 043685 215 PYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLERLGLMDNHLSGSIPPSLGNSTLTWLTFSLN 294 (620)
Q Consensus 215 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 294 (620)
+..+. |+.|++++...|.+ +.+|..++.+.+|+.|++++|++. ..|..-+...++.+.++.|
T Consensus 177 ~~~i~-m~~L~~ld~~~N~L----------------~tlP~~lg~l~~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~N 238 (565)
T KOG0472|consen 177 ENHIA-MKRLKHLDCNSNLL----------------ETLPPELGGLESLELLYLRRNKIR-FLPEFPGCSLLKELHVGEN 238 (565)
T ss_pred HHHHH-HHHHHhcccchhhh----------------hcCChhhcchhhhHHHHhhhcccc-cCCCCCccHHHHHHHhccc
Confidence 55454 99999999998876 378889999999999999999997 5553333388888888888
Q ss_pred cccccCCCCccCCCCccEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCc
Q 043685 295 HFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISS 374 (620)
Q Consensus 295 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 374 (620)
.+.-........++++..|++.+|++. ..|+.+.-+.+|.+|++++|.+++. +..++.+ .|+.|.+.+|.+..+-.+
T Consensus 239 ~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~L-p~sLgnl-hL~~L~leGNPlrTiRr~ 315 (565)
T KOG0472|consen 239 QIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSL-PYSLGNL-HLKFLALEGNPLRTIRRE 315 (565)
T ss_pred HHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccC-Ccccccc-eeeehhhcCCchHHHHHH
Confidence 887444444447888888899988887 6788888888888999988888854 4557777 788888888876532111
Q ss_pred cccC-----CCCCcE----EECCCCcc---c-cC-CC---ccccCCCCCCEEecCCCeecccCChhhhccC---CCcEEE
Q 043685 375 NWGK-----CPKLGT----LNVSMNNI---T-GG-IP---REIGNSSQLQALDLSLNQIVGDIPKELGKSN---SLTKLI 434 (620)
Q Consensus 375 ~~~~-----~~~L~~----L~l~~n~l---~-~~-~~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~---~L~~L~ 434 (620)
.+.+ ++.|+. =-++...- + .. .+ .......+.++|+++.-+++ .+|+...... -.+.++
T Consensus 316 ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~Vn 394 (565)
T KOG0472|consen 316 IISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVN 394 (565)
T ss_pred HHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEe
Confidence 1110 011111 00111100 0 00 11 11233567888999988888 4554443333 388999
Q ss_pred ccCCcccccCCccccCCCCCCE-EEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCc
Q 043685 435 LRGNQLTGRLPTEIGSLIKLEY-LDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFG 513 (620)
Q Consensus 435 l~~n~l~~~~~~~~~~~~~L~~-L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 513 (620)
++.|++. ++|..+..+..+.+ +.+++|.+ +..|..+..+++|..|++++|.+ ..+|..++.+..|+.|+++.|++.
T Consensus 395 fskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~L-n~LP~e~~~lv~Lq~LnlS~NrFr 471 (565)
T KOG0472|consen 395 FSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLL-NDLPEEMGSLVRLQTLNLSFNRFR 471 (565)
T ss_pred cccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchh-hhcchhhhhhhhhheecccccccc
Confidence 9999998 88887777666655 45555555 57888899999999999999887 578888999999999999999999
Q ss_pred cccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCCcccCCCCccccCCCCCC
Q 043685 514 GEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKGL 584 (620)
Q Consensus 514 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~Np~~ 584 (620)
..|..+..+..|+.+-.++|++..+.|..+.++..|..||+.+|.+..++|..+..++++.+.+.|||+.
T Consensus 472 -~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 472 -MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred -cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 8888888888888888888999988888899999999999999999999999899999999999999987
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=9.3e-35 Score=298.70 Aligned_cols=420 Identities=28% Similarity=0.316 Sum_probs=319.3
Q ss_pred CCCcEEEccCCcCCCcCcccccCCCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCCCCCcCCCCcccCCCCCCcEEEc
Q 043685 103 SSIEELFLYSNHLNESFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCL 182 (620)
Q Consensus 103 ~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 182 (620)
..|+.|+++.|.+. ..|...+++.+|+++.|.+|... .+|..+..+++|++|++++|.+. ..|..+..+..+..+..
T Consensus 68 ~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~ 144 (1081)
T KOG0618|consen 68 SHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAA 144 (1081)
T ss_pred HHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhh
Confidence 34444444444442 45677888999999999988877 78889999999999999999888 67888888888888888
Q ss_pred ccccccccCCCCCCceeecEEEccCCccccccCCCCCCCCCCCEEEccCCcCCCCCCCccccccccccccCCcccccCCC
Q 043685 183 YKNLLIGSIPSSLGNLKLIDLKLSSNQLTGYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTN 262 (620)
Q Consensus 183 ~~n~~~~~~~~~l~~l~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~~ 262 (620)
++|.... .++...++++++..+.+.+.++..+..++. .+++.+|.+. ...+..+++
T Consensus 145 s~N~~~~----~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~------------------~~dls~~~~ 200 (1081)
T KOG0618|consen 145 SNNEKIQ----RLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME------------------VLDLSNLAN 200 (1081)
T ss_pred hcchhhh----hhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh------------------hhhhhhccc
Confidence 8884332 233333778888888888777777766666 6888888762 234667788
Q ss_pred CCeeeccCCcCCCCCCCCCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCceeecCCC
Q 043685 263 LERLGLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGN 342 (620)
Q Consensus 263 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 342 (620)
|+.+....|++.. -....++++.|+...|.++.... -....+|++++++.+++. .+|.++..+.+|+.+...+|
T Consensus 201 l~~l~c~rn~ls~---l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N 274 (1081)
T KOG0618|consen 201 LEVLHCERNQLSE---LEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHN 274 (1081)
T ss_pred hhhhhhhhcccce---EEecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceEecccch
Confidence 8888888887652 12234788889988888873322 223468999999999988 56789999999999999999
Q ss_pred ccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCC-CCEEecCCCeecccCC
Q 043685 343 NLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQ-LQALDLSLNQIVGDIP 421 (620)
Q Consensus 343 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~ 421 (620)
.++. .+.......+|+.|.+..|.+. -+|....++..|++|++..|.+.......+.-+.. |+.|+.+.|++.....
T Consensus 275 ~l~~-lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~ 352 (1081)
T KOG0618|consen 275 RLVA-LPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPS 352 (1081)
T ss_pred hHHh-hHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccc
Confidence 9864 3455667788999999999887 44556677899999999999988444434444433 7777778777763222
Q ss_pred hhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccC
Q 043685 422 KELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQ 501 (620)
Q Consensus 422 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 501 (620)
..=...+.|+.|++.+|.++...-..+.+.+.|+.|++++|++.......+.+++.|+.|+++||.+ ..+|..+..++.
T Consensus 353 ~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL-~~Lp~tva~~~~ 431 (1081)
T KOG0618|consen 353 YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL-TTLPDTVANLGR 431 (1081)
T ss_pred ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchh-hhhhHHHHhhhh
Confidence 2223456789999999999866656778889999999999999877777888999999999999999 467788999999
Q ss_pred CCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccc-cCccccCCCCCCEEEccCCcCc
Q 043685 502 LSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGS-IPNCFDGMHGLSVIDISDNQLQ 561 (620)
Q Consensus 502 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~ 561 (620)
|++|...+|++. ..| .+..++.|+.+|++.|.++.. +|... ..+.|++||+++|...
T Consensus 432 L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 432 LHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCccc
Confidence 999999999998 666 788999999999999998755 33332 3388999999999853
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.1e-33 Score=290.80 Aligned_cols=485 Identities=28% Similarity=0.283 Sum_probs=387.1
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEECCCCCCCCcCCccccCCCCCCEEECCCCCCcccCCC---CCCCCcEEEc
Q 043685 34 RVINISLRNTGLSGTLRDLSFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPL---ELSSIEELFL 110 (620)
Q Consensus 34 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~---~l~~L~~L~l 110 (620)
.+++|+++.|.+-.. +.+..++.-+|++||+++|.+. ..|..+..+++|+.|+++.|.|.. +|. .+.+|+++.|
T Consensus 22 ~~~~ln~~~N~~l~~-pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~-vp~s~~~~~~l~~lnL 98 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSR-PLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRS-VPSSCSNMRNLQYLNL 98 (1081)
T ss_pred HHHhhhccccccccC-chHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHhh-Cchhhhhhhcchhhee
Confidence 578888887765532 1334455566999999999986 688899999999999999998873 343 4588999999
Q ss_pred cCCcCCCcCcccccCCCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCCCCCcCCCCcccCCCCCCcEEEccccccccc
Q 043685 111 YSNHLNESFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLYKNLLIGS 190 (620)
Q Consensus 111 s~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 190 (620)
..|.+. ..|..+..+++|++|++++|.+. ..|..+..+..++.+..++|..... ++... .+++++..|.+.+.
T Consensus 99 ~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~ 171 (1081)
T KOG0618|consen 99 KNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGS 171 (1081)
T ss_pred ccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccc
Confidence 999884 58999999999999999999998 7899999999999999999932212 22322 78888888888877
Q ss_pred CCCCCCceeecEEEccCCccccccCCCCCCCCCCCEEEccCCcCCCCCCCccccccccccccCCcccccCCCCCeeeccC
Q 043685 191 IPSSLGNLKLIDLKLSSNQLTGYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLERLGLMD 270 (620)
Q Consensus 191 ~~~~l~~l~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 270 (620)
++..+..++- .+++++|.+. . ..+..+.+|+.+....|.+.. .-...++++.|+.++
T Consensus 172 ~~~~i~~l~~-~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~-------------------l~~~g~~l~~L~a~~ 228 (1081)
T KOG0618|consen 172 FLIDIYNLTH-QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSE-------------------LEISGPSLTALYADH 228 (1081)
T ss_pred hhcchhhhhe-eeecccchhh-h--hhhhhccchhhhhhhhcccce-------------------EEecCcchheeeecc
Confidence 7766666543 5999999887 2 246677888888888887631 112457899999999
Q ss_pred CcCCCCCCCCCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCceeecCCCccccccCc
Q 043685 271 NHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISE 350 (620)
Q Consensus 271 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~ 350 (620)
|.+. .....+...+++.++++.+.+++.. .|++.+.+|+.+....|.++ .+|..+....+|+.+.+..|.+..+ +.
T Consensus 229 n~l~-~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yi-p~ 304 (1081)
T KOG0618|consen 229 NPLT-TLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYI-PP 304 (1081)
T ss_pred Ccce-eeccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhC-CC
Confidence 9987 4445556689999999999998655 99999999999999999995 7888888889999999999999854 45
Q ss_pred ccCCCCCCCEEECCCCcccCccCccccCCCC-CcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCC
Q 043685 351 ALGIYPNLTFIDLSRNNFYGEISSNWGKCPK-LGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNS 429 (620)
Q Consensus 351 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 429 (620)
....++.|++|++..|++....+..+.-... |+.++.+.|.+.......-...+.|+.|.+.+|.+++.....+.+..+
T Consensus 305 ~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h 384 (1081)
T KOG0618|consen 305 FLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKH 384 (1081)
T ss_pred cccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccc
Confidence 5777999999999999998665544444444 788888888887433223334678999999999999877778899999
Q ss_pred CcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCC
Q 043685 430 LTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASH 509 (620)
Q Consensus 430 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 509 (620)
|+.|++++|++.......+.+++.|++|++|||.++ .+|..+..++.|++|...+|.+. ..| .+..+++|+.+|++.
T Consensus 385 LKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~ 461 (1081)
T KOG0618|consen 385 LKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSC 461 (1081)
T ss_pred eeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEeccc
Confidence 999999999999555566889999999999999997 66789999999999999999994 666 788999999999999
Q ss_pred CcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCC
Q 043685 510 NLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDN 558 (620)
Q Consensus 510 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 558 (620)
|.++......-...++|++||++||.-....-..|..+..+...++.-|
T Consensus 462 N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 462 NNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred chhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 9998553333333389999999999955455566777777777777766
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=6e-33 Score=273.11 Aligned_cols=362 Identities=25% Similarity=0.333 Sum_probs=223.1
Q ss_pred CCEEEccCCcCC-cccCccCCCCCCCCEEeCCCCCCcCCCCcccCCCCCCcEEEcccccccccCCCCCCcee-ecEEEcc
Q 043685 129 IVRLYINNNSLS-SSIPTNIGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLYKNLLIGSIPSSLGNLK-LIDLKLS 206 (620)
Q Consensus 129 L~~L~Ls~n~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-L~~L~l~ 206 (620)
.+-+|+++|.++ +..|..+..++.++.|.+...++. .+|+.++.+.+|++|.+.+|++. .+...+..+. |+.+.+.
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhh
Confidence 344444444444 234444444455555555444444 34444555555555555554444 1222223333 3333333
Q ss_pred CCccc-cccCCCCCCCCCCCEEEccCCcCCCCCCCccccccccccccCCcccccCCCCCeeeccCCcCCCCCCCCCCCCC
Q 043685 207 SNQLT-GYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLERLGLMDNHLSGSIPPSLGNST 285 (620)
Q Consensus 207 ~~~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 285 (620)
.|++. .-+|..+.++..|..||+++|++. ..|..+...+++-.|++++|+|..
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~----------------EvP~~LE~AKn~iVLNLS~N~Iet---------- 140 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLR----------------EVPTNLEYAKNSIVLNLSYNNIET---------- 140 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchhhhh----------------hcchhhhhhcCcEEEEcccCcccc----------
Confidence 33322 134556667777777777777764 456666677777777777777652
Q ss_pred cCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCC
Q 043685 286 LTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSR 365 (620)
Q Consensus 286 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 365 (620)
.+...+..+..|-.|++++|++. .+|+....+..|++|.+++|.+.......+..+++|+.|.+++
T Consensus 141 -------------IPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~ 206 (1255)
T KOG0444|consen 141 -------------IPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSN 206 (1255)
T ss_pred -------------CCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccc
Confidence 22233444555666666666665 6677777778888888888877655555556666777777776
Q ss_pred Cc-ccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccC
Q 043685 366 NN-FYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRL 444 (620)
Q Consensus 366 n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 444 (620)
.+ -...+|..+..+.+|..++++.|.+. ..|+.+..+++|+.|++++|+++. .........+|++|+++.|+++ .+
T Consensus 207 TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~L 283 (1255)
T KOG0444|consen 207 TQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VL 283 (1255)
T ss_pred ccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cc
Confidence 53 33456667777777777777777777 667777777777777777777763 3333445566777777777776 66
Q ss_pred CccccCCCCCCEEEccCCcCCc-chhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCC
Q 043685 445 PTEIGSLIKLEYLDFSANRFNN-SVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSL 523 (620)
Q Consensus 445 ~~~~~~~~~L~~L~ls~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 523 (620)
|.++..++.|+.|.+.+|+++- -+|+-++++.+|+.+...+|.+ ...|+.+..+..|+.|.|++|++. ..|.++.-+
T Consensus 284 P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L-ElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL 361 (1255)
T KOG0444|consen 284 PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL-ELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLL 361 (1255)
T ss_pred hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc-ccCchhhhhhHHHHHhccccccee-echhhhhhc
Confidence 7777777777777777776543 2556666677777777776666 466677777777777777777766 566667677
Q ss_pred CCCCEEECCCCcCc
Q 043685 524 KSLEMLNLSHNNLS 537 (620)
Q Consensus 524 ~~L~~L~l~~n~l~ 537 (620)
+.|+.||+..|+-.
T Consensus 362 ~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 362 PDLKVLDLRENPNL 375 (1255)
T ss_pred CCcceeeccCCcCc
Confidence 77777777776644
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=6.7e-32 Score=265.79 Aligned_cols=366 Identities=26% Similarity=0.318 Sum_probs=177.6
Q ss_pred CCCCcEEEccccccc-ccCCCCCCcee-ecEEEccCCccccccCCCCCCCCCCCEEEccCCcCCCCCCCccccccccccc
Q 043685 174 LSNLARLCLYKNLLI-GSIPSSLGNLK-LIDLKLSSNQLTGYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRG 251 (620)
Q Consensus 174 l~~L~~L~l~~n~~~-~~~~~~l~~l~-L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~ 251 (620)
++-.+-.++++|.+. +.+|..+..++ ++-|.+...++. .+|..++.+.+|++|.+.+|++.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~---------------- 68 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI---------------- 68 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH----------------
Confidence 444555666666666 34555555555 666666555555 45555666666666666666543
Q ss_pred cCCcccccCCCCCeeeccCCcCCCCCCCCCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCcccccccccccccc
Q 043685 252 FLPPFVGNLTNLERLGLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNC 331 (620)
Q Consensus 252 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 331 (620)
.+...+..++.|+.+.++.|++... -+|..+..+..|..|+++.|++. ..|..+...
T Consensus 69 ~vhGELs~Lp~LRsv~~R~N~LKns----------------------GiP~diF~l~dLt~lDLShNqL~-EvP~~LE~A 125 (1255)
T KOG0444|consen 69 SVHGELSDLPRLRSVIVRDNNLKNS----------------------GIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYA 125 (1255)
T ss_pred hhhhhhccchhhHHHhhhccccccC----------------------CCCchhcccccceeeecchhhhh-hcchhhhhh
Confidence 2334455566666666666655321 13334444444444444444444 344444444
Q ss_pred CCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEec
Q 043685 332 TSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDL 411 (620)
Q Consensus 332 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 411 (620)
+++-.|++++|+|..++...|.+++.|-.|||++|++. ..|.....+..|++|++++|.+.-..-..+..+++|+.|++
T Consensus 126 Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 126 KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred cCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence 45555555555554444444444555555555555544 22223344445555555555443222223334444445555
Q ss_pred CCCeec-ccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcc
Q 043685 412 SLNQIV-GDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQ 490 (620)
Q Consensus 412 ~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 490 (620)
++.+-+ .-+|..+..+.+|..++++.|.+. ..|+.+..+++|+.|++|+|.++. +........+|+.|+++.|++ .
T Consensus 205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQL-t 281 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQL-T 281 (1255)
T ss_pred ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchh-c
Confidence 444322 234444444455555555555544 444444555555555555555442 112223333445555555554 2
Q ss_pred cchhHhhhccCCCEEeCCCCcCccc-cchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCCcc
Q 043685 491 ELPKELEKLVQLSLLDASHNLFGGE-IPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNSTA 569 (620)
Q Consensus 491 ~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 569 (620)
.+|.++..++.|+.|.+.+|+++-. +|..++.+.+|+.+..++|.+. ..|+.+..|+.|+.|.|+.|.+.+.+..-..
T Consensus 282 ~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHl 360 (1255)
T KOG0444|consen 282 VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHL 360 (1255)
T ss_pred cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhh
Confidence 4444455555555555555544321 3444455555555555554443 4455555555555555555555433333333
Q ss_pred cCCCCccccCCCCCC
Q 043685 570 FRNAPVEALEGNKGL 584 (620)
Q Consensus 570 ~~~l~~~~l~~Np~~ 584 (620)
++.++++++..||-+
T Consensus 361 L~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 361 LPDLKVLDLRENPNL 375 (1255)
T ss_pred cCCcceeeccCCcCc
Confidence 444555555555444
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=7.2e-22 Score=227.42 Aligned_cols=286 Identities=23% Similarity=0.270 Sum_probs=127.4
Q ss_pred CCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCCCCCcCCCCcccCCCCCCcEEEcccccccccCCCCCCcee-ecEEE
Q 043685 126 LSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLYKNLLIGSIPSSLGNLK-LIDLK 204 (620)
Q Consensus 126 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-L~~L~ 204 (620)
..+|+.|+++++.+. .++..+..+++|++|+++++.....+| .+..+++|+.|++.+|.....+|..+..++ |+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 455666666666555 445555556666666666554332333 355555666666655544444455554444 55555
Q ss_pred ccCCccccccCCCCCCCCCCCEEEccCCcCCCCCCCccccccccccccCCcccccCCCCCeeeccCCcCCCCCCCCCCCC
Q 043685 205 LSSNQLTGYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLERLGLMDNHLSGSIPPSLGNS 284 (620)
Q Consensus 205 l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 284 (620)
+++|..-..+|..+ .+++|+.|++++|.... .+|. ...+|++|+++++.+. .+|..+
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~---------------~~p~---~~~nL~~L~L~~n~i~-~lP~~~--- 744 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLK---------------SFPD---ISTNISWLDLDETAIE-EFPSNL--- 744 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCcc---------------cccc---ccCCcCeeecCCCccc-cccccc---
Confidence 55443222333322 34445555554443210 1111 1233444444444432 222222
Q ss_pred CcCeEEecCCcccccCCCCccCCCCccEEEecCcccc-------ccccccccccCCCceeecCCCccccccCcccCCCCC
Q 043685 285 TLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQ-------GTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPN 357 (620)
Q Consensus 285 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-------~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~ 357 (620)
.+++|++|.+.++... ...+......++|+.|++++|......+..+..+++
T Consensus 745 ---------------------~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~ 803 (1153)
T PLN03210 745 ---------------------RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHK 803 (1153)
T ss_pred ---------------------cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCC
Confidence 2233333333322110 000111112345555555555444344444555555
Q ss_pred CCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccC
Q 043685 358 LTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRG 437 (620)
Q Consensus 358 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 437 (620)
|+.|++++|.....+|... .+++|+.|++++|......|.. .++|++|++++|.++ .+|..+..+++|+.|++++
T Consensus 804 L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 804 LEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred CCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCC
Confidence 5555555543222333332 4555555555555332222221 234555555555554 3444455555555555555
Q ss_pred CcccccCCccccCCCCCCEEEccCC
Q 043685 438 NQLTGRLPTEIGSLIKLEYLDFSAN 462 (620)
Q Consensus 438 n~l~~~~~~~~~~~~~L~~L~ls~n 462 (620)
|.-...++..+..++.|+.+++++|
T Consensus 879 C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 879 CNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CCCcCccCcccccccCCCeeecCCC
Confidence 4322234444444555555555554
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=3.8e-22 Score=229.68 Aligned_cols=340 Identities=25% Similarity=0.249 Sum_probs=209.7
Q ss_pred CCcccCCCCCCcEEEccccc------ccccCCCCCCcee--ecEEEccCCccccccCCCCCCCCCCCEEEccCCcCCCCC
Q 043685 167 IPLSFGNLSNLARLCLYKNL------LIGSIPSSLGNLK--LIDLKLSSNQLTGYIPYSLGNVTSLSSLLLAKNKLYGSL 238 (620)
Q Consensus 167 ~~~~l~~l~~L~~L~l~~n~------~~~~~~~~l~~l~--L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 238 (620)
.+.+|..+.+|+.|.+..+. ....+|+.+..+. |+.|++.++.+. .+|..+ ...+|++|++.++++.
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~--- 624 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE--- 624 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc---
Confidence 34567778888888776543 2224556665554 788888877776 445555 4578888888887763
Q ss_pred CCccccccccccccCCcccccCCCCCeeeccCCcCCCCCCCCCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCc
Q 043685 239 PPFVDLSINQFRGFLPPFVGNLTNLERLGLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEY 318 (620)
Q Consensus 239 ~~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 318 (620)
.++..+..+++|+.++++++.....+|.....++|+.|++.+|.....+|..+..+++|+.|++.+|
T Consensus 625 -------------~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 625 -------------KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred -------------ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence 3445566778888888887764445554323367777777776655566777777777777777777
Q ss_pred cccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCcccc----
Q 043685 319 RFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITG---- 394 (620)
Q Consensus 319 ~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~---- 394 (620)
...+.+|..+ ++++|+.|++++|......+. ..++|++|++++|.+.. +|..+ .+++|++|.+.++....
T Consensus 692 ~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 692 ENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred CCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhcccc
Confidence 5555666544 567777777777754333222 23567777777776653 33333 46667777766543211
Q ss_pred ---CCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhh
Q 043685 395 ---GIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEI 471 (620)
Q Consensus 395 ---~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~ 471 (620)
..+..+...++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ .+++|++|++++|.....+|..
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc
Confidence 111122234567777777776655666667777777777777765443555544 5667777777776543333332
Q ss_pred hhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCc
Q 043685 472 LGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNN 535 (620)
Q Consensus 472 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 535 (620)
.++|+.|++++|.+. .+|..+..+++|+.|++++|+--..+|..+..+++|+.+++++|.
T Consensus 845 ---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 845 ---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 246677777777663 456666677777777777643322455556666677777777665
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=5.7e-26 Score=212.92 Aligned_cols=406 Identities=23% Similarity=0.216 Sum_probs=240.6
Q ss_pred cCCCCC-CCCcEEEccCCcCCCcCcccccCCCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCC-CCCcCCCCcccCCC
Q 043685 97 KIPLEL-SSIEELFLYSNHLNESFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSN-NQLGGSIPLSFGNL 174 (620)
Q Consensus 97 ~~~~~l-~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~l~~l 174 (620)
++|..+ +.-.+++|..|.++...+.+|+.+++||.||||+|.|+.+.|.+|.++..|..|-+.+ |.|++.....|+.|
T Consensus 60 eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 60 EVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred cCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 567666 5678899999999998899999999999999999999999999999999887765554 88998888889999
Q ss_pred CCCcEEEcccccccccCCCCCCcee-ecEEEccCCccccccCCCCCCCCCCCEEEccCCcCCCCCCCccccccccccccC
Q 043685 175 SNLARLCLYKNLLIGSIPSSLGNLK-LIDLKLSSNQLTGYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFL 253 (620)
Q Consensus 175 ~~L~~L~l~~n~~~~~~~~~l~~l~-L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~ 253 (620)
..|+.|.+..|++.....+.+..++ +..|.+.+|.+..+....|..+..++.+.+..|.+..
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic----------------- 202 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC----------------- 202 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----------------
Confidence 9999998888887766666666666 6666666666664444456666666666665555321
Q ss_pred CcccccCCCCCeeeccCCcCCCCCCCCCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccc-cC
Q 043685 254 PPFVGNLTNLERLGLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRN-CT 332 (620)
Q Consensus 254 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-l~ 332 (620)
..+++.+..... .+ +..+++..-..-..+.+.++...-+..|.. ..
T Consensus 203 ---dCnL~wla~~~a-~~-----------------------------~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~e 249 (498)
T KOG4237|consen 203 ---DCNLPWLADDLA-MN-----------------------------PIETSGARCVSPYRLYYKRINQEDARKFLCSLE 249 (498)
T ss_pred ---ccccchhhhHHh-hc-----------------------------hhhcccceecchHHHHHHHhcccchhhhhhhHH
Confidence 001111111000 00 000111111111111111111111111110 01
Q ss_pred CCceeecCCC-ccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEec
Q 043685 333 SLIRVRLDGN-NLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDL 411 (620)
Q Consensus 333 ~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 411 (620)
.+..-....+ .....+...|..+++|++|++++|+++.+.+.+|.+...+++|.+..|++..+....|.++..|+.|++
T Consensus 250 sl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L 329 (498)
T KOG4237|consen 250 SLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSL 329 (498)
T ss_pred hHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeee
Confidence 1111111111 122223345778888888888888888888888888888888888888887666667888888888888
Q ss_pred CCCeecccCChhhhccCCCcEEEccCCcccc-----cCCc-----------cccCCCCCCEEEccCCcCCcc---hhhh-
Q 043685 412 SLNQIVGDIPKELGKSNSLTKLILRGNQLTG-----RLPT-----------EIGSLIKLEYLDFSANRFNNS---VPEI- 471 (620)
Q Consensus 412 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~-----------~~~~~~~L~~L~ls~n~l~~~---~~~~- 471 (620)
++|+|+...|.+|..+.+|.+|++-.|.+.- .+.+ .-.+...++.+.++...+.+. .|+.
T Consensus 330 ~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~ 409 (498)
T KOG4237|consen 330 YDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEEL 409 (498)
T ss_pred cCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCcccc
Confidence 8888888888888888888888887776530 0000 012233466666666544321 1110
Q ss_pred --------hhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCcc
Q 043685 472 --------LGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNC 543 (620)
Q Consensus 472 --------l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 543 (620)
-..++-+....=..|.....+|..+. ..-.++++++|.++ .+|.. .+.+| .+|+++|+++...-..
T Consensus 410 ~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~t 483 (498)
T KOG4237|consen 410 GCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYT 483 (498)
T ss_pred CCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhccc
Confidence 01111222221111222222322221 13345677777776 33433 44555 6777777776555566
Q ss_pred ccCCCCCCEEEccCC
Q 043685 544 FDGMHGLSVIDISDN 558 (620)
Q Consensus 544 ~~~l~~L~~L~l~~N 558 (620)
|.+++.|.+|-|++|
T Consensus 484 f~n~tql~tlilsyn 498 (498)
T KOG4237|consen 484 FSNMTQLSTLILSYN 498 (498)
T ss_pred ccchhhhheeEEecC
Confidence 667777777776665
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=2.9e-24 Score=201.61 Aligned_cols=277 Identities=20% Similarity=0.154 Sum_probs=155.1
Q ss_pred cEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCC-CcccCccCccccCCCCCcEEECCC
Q 043685 311 EIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSR-NNFYGEISSNWGKCPKLGTLNVSM 389 (620)
Q Consensus 311 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~ 389 (620)
.+++++.|.++...+.+|..+++|++|++++|.|+.+.+++|..+++|.+|-+.+ |+|+......|.++..++.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 4455555555544445555555555555555555555555555555555544433 555555555555555555555555
Q ss_pred CccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCccc------------ccCCccccCCCCCCEE
Q 043685 390 NNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLT------------GRLPTEIGSLIKLEYL 457 (620)
Q Consensus 390 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~~~~L~~L 457 (620)
|++.....+.|..++++..|.+.+|.+...-...|..+..++.+.+..|.+. ...+..++...-..-.
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~ 229 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY 229 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchH
Confidence 5555555555555555555555555554333334555555555555555421 0111111111111111
Q ss_pred EccCCcCCcchhhhhhC-CCCCCEecCcCCcCcccch-hHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCc
Q 043685 458 DFSANRFNNSVPEILGN-LLKLHYLGLSNNQFVQELP-KELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNN 535 (620)
Q Consensus 458 ~ls~n~l~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 535 (620)
.+.+.++....+.-|.. ...+..=..+.+......| ..|..+++|+.|++++|+|+++.+.+|.+...+++|+|..|+
T Consensus 230 rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~ 309 (498)
T KOG4237|consen 230 RLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK 309 (498)
T ss_pred HHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch
Confidence 12222222222221111 1111111112222222333 457888888888888888888888888888888888888888
Q ss_pred CccccCccccCCCCCCEEEccCCcCccCCCCCcc-cCCCCccccCCCCCCCCC
Q 043685 536 LSGSIPNCFDGMHGLSVIDISDNQLQGPVPNSTA-FRNAPVEALEGNKGLCGG 587 (620)
Q Consensus 536 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~~~l~~~~l~~Np~~C~~ 587 (620)
|..+....|.++..|+.|+|.+|+|++..|..+. ..++..+.+.+|||.|+|
T Consensus 310 l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 310 LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence 8767667788888888888888888877775443 446777888888888876
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=1.7e-18 Score=185.30 Aligned_cols=260 Identities=24% Similarity=0.283 Sum_probs=156.4
Q ss_pred CCeeeccCCcCCCCCCCCCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCceeecCCC
Q 043685 263 LERLGLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGN 342 (620)
Q Consensus 263 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 342 (620)
-..|+++++.++ .+|..+. .+++.|.+.+|.++. +|. .+++|++|++++|+++ .+|.. .++|+.|++.+|
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~-~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh-cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCC
Confidence 344555555554 3343332 245555555555553 222 1356677777776666 34432 356777777777
Q ss_pred ccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCCh
Q 043685 343 NLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPK 422 (620)
Q Consensus 343 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 422 (620)
.+..... .+++|+.|++++|+++.. |. .+++|+.|++++|.+.+ +|.. ..+|+.|++++|.+++ +|.
T Consensus 273 ~L~~Lp~----lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~ 339 (788)
T PRK15387 273 PLTHLPA----LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT 339 (788)
T ss_pred chhhhhh----chhhcCEEECcCCccccc-cc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc
Confidence 6664322 234577777777776643 22 24567777777777763 3322 2356677777777763 332
Q ss_pred hhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCC
Q 043685 423 ELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQL 502 (620)
Q Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 502 (620)
...+|+.|++++|+++ .+|.. .++|+.|++++|.+.. +|.. ..+|+.|++++|.+.. +|.. .++|
T Consensus 340 ---lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L 404 (788)
T PRK15387 340 ---LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSEL 404 (788)
T ss_pred ---cccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCC
Confidence 1246777777777777 44432 3467777777777764 3332 2467777887777753 4432 2567
Q ss_pred CEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCC
Q 043685 503 SLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVP 565 (620)
Q Consensus 503 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 565 (620)
+.|++++|++++ +|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+
T Consensus 405 ~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 405 KELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred CEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 778888887774 4432 245677788888877 567777777788888888888876544
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=4.5e-18 Score=181.99 Aligned_cols=204 Identities=27% Similarity=0.292 Sum_probs=132.1
Q ss_pred CCccEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEEC
Q 043685 308 GALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNV 387 (620)
Q Consensus 308 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 387 (620)
++|+.|++.+|.+. .+|.. ..+|+.|++.+|+++..+. .+++|+.|++++|++.+. |.. ...|+.|++
T Consensus 262 ~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~L 329 (788)
T PRK15387 262 PGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL-PAL---PSELCKLWA 329 (788)
T ss_pred cccceeeccCCchh-hhhhc---hhhcCEEECcCCccccccc----cccccceeECCCCccccC-CCC---ccccccccc
Confidence 45666666666554 33332 2456677777777764432 246677888877777653 221 345777777
Q ss_pred CCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcc
Q 043685 388 SMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNS 467 (620)
Q Consensus 388 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ 467 (620)
++|.++. +|.. ..+|++|++++|++++ +|.. .++|+.|++++|++. .+|.. ..+|+.|++++|.++.
T Consensus 330 s~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~- 396 (788)
T PRK15387 330 YNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS- 396 (788)
T ss_pred ccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-
Confidence 7777763 3321 2467788888887773 4432 346777788888777 45542 3467888888888764
Q ss_pred hhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccc
Q 043685 468 VPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCF 544 (620)
Q Consensus 468 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 544 (620)
+|.. .++|+.|++++|.+.. +|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..+
T Consensus 397 LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 397 LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 3332 2568888888888754 4532 246777888888887 567778888888888888888887666554
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=1.5e-19 Score=181.40 Aligned_cols=258 Identities=23% Similarity=0.235 Sum_probs=166.6
Q ss_pred ccccccCCCceeecCCCccccc----cCcccCCCCCCCEEECCCCcccC------ccCccccCCCCCcEEECCCCccccC
Q 043685 326 TSLRNCTSLIRVRLDGNNLTGN----ISEALGIYPNLTFIDLSRNNFYG------EISSNWGKCPKLGTLNVSMNNITGG 395 (620)
Q Consensus 326 ~~l~~l~~L~~L~l~~~~l~~~----~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~~~~L~~L~l~~n~l~~~ 395 (620)
..+..+++|+.+.+.++.++.. ....+...+++++++++++.+.. ..+..+..+++|+.|++++|.+...
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 3344455677777777666422 22334456667777777766542 1223455677888888888877644
Q ss_pred CCccccCCC---CCCEEecCCCeecc----cCChhhhcc-CCCcEEEccCCccccc----CCccccCCCCCCEEEccCCc
Q 043685 396 IPREIGNSS---QLQALDLSLNQIVG----DIPKELGKS-NSLTKLILRGNQLTGR----LPTEIGSLIKLEYLDFSANR 463 (620)
Q Consensus 396 ~~~~~~~l~---~L~~L~l~~n~~~~----~~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~ls~n~ 463 (620)
.+..+..+. +|++|++++|.+.+ .+...+..+ ++|++|++++|.+++. ++..+..++.|++|++++|.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 444443333 48888888887763 222334455 7888888888887732 33445666788888888888
Q ss_pred CCcc----hhhhhhCCCCCCEecCcCCcCccc----chhHhhhccCCCEEeCCCCcCccccchhcc-----CCCCCCEEE
Q 043685 464 FNNS----VPEILGNLLKLHYLGLSNNQFVQE----LPKELEKLVQLSLLDASHNLFGGEIPFQIC-----SLKSLEMLN 530 (620)
Q Consensus 464 l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~ 530 (620)
+++. ++..+...++|++|++++|.+.+. +...+..+++|+.|++++|.+++.....+. ..+.|++|+
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~ 256 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLS 256 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEE
Confidence 8742 233455567889999988887643 233456678899999999888754333332 247889999
Q ss_pred CCCCcCccc----cCccccCCCCCCEEEccCCcCccCCCC-----Cccc-CCCCccccCCCCC
Q 043685 531 LSHNNLSGS----IPNCFDGMHGLSVIDISDNQLQGPVPN-----STAF-RNAPVEALEGNKG 583 (620)
Q Consensus 531 l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~-----~~~~-~~l~~~~l~~Np~ 583 (620)
+++|.++.. +...+..+++|+++++++|.+...... ...+ +.++.+++.+|||
T Consensus 257 l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 257 LSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred ccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 999988621 234556668899999999988743211 1123 5677888888876
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=2.6e-19 Score=179.67 Aligned_cols=256 Identities=20% Similarity=0.240 Sum_probs=174.8
Q ss_pred cCCCCccEEEecCccccc----cccccccccCCCceeecCCCcccc------ccCcccCCCCCCCEEECCCCcccCccCc
Q 043685 305 CRGGALEIFIVDEYRFQG----TIPTSLRNCTSLIRVRLDGNNLTG------NISEALGIYPNLTFIDLSRNNFYGEISS 374 (620)
Q Consensus 305 ~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 374 (620)
..+..|+.+.+.++.+.. .++..+...+.++++.+.++.+.+ .....+..+++|+.|++++|.+.+..+.
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 334456666666666532 234445556677777777776552 1223456678888888888887654444
Q ss_pred cccCCC---CCcEEECCCCcccc----CCCccccCC-CCCCEEecCCCeeccc----CChhhhccCCCcEEEccCCcccc
Q 043685 375 NWGKCP---KLGTLNVSMNNITG----GIPREIGNS-SQLQALDLSLNQIVGD----IPKELGKSNSLTKLILRGNQLTG 442 (620)
Q Consensus 375 ~~~~~~---~L~~L~l~~n~l~~----~~~~~~~~l-~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~ 442 (620)
.+..+. +|++|++++|.+.. .+...+..+ ++|++|++++|.+++. ....+..+++|++|++++|.+++
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence 444444 48999998888762 122334555 7889999999988732 33445667789999999998873
Q ss_pred c----CCccccCCCCCCEEEccCCcCCcc----hhhhhhCCCCCCEecCcCCcCcccchhHhh-h----ccCCCEEeCCC
Q 043685 443 R----LPTEIGSLIKLEYLDFSANRFNNS----VPEILGNLLKLHYLGLSNNQFVQELPKELE-K----LVQLSLLDASH 509 (620)
Q Consensus 443 ~----~~~~~~~~~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~----l~~L~~L~l~~ 509 (620)
. ++..+...++|++|++++|.+.+. +...+..+++|++|++++|.+.+.....+. . .+.|+.|++++
T Consensus 180 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~ 259 (319)
T cd00116 180 AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC 259 (319)
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccC
Confidence 2 233455567999999999988754 344566788899999999988753333332 2 37999999999
Q ss_pred CcCccc----cchhccCCCCCCEEECCCCcCccc----cCccccCC-CCCCEEEccCCcC
Q 043685 510 NLFGGE----IPFQICSLKSLEMLNLSHNNLSGS----IPNCFDGM-HGLSVIDISDNQL 560 (620)
Q Consensus 510 n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l-~~L~~L~l~~N~l 560 (620)
|.++.. ....+..+++|+++++++|.++.. ....+... +.|+++++.+|++
T Consensus 260 n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 260 NDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 998732 334556678999999999999854 33444445 6899999998875
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=1.4e-17 Score=179.47 Aligned_cols=246 Identities=25% Similarity=0.369 Sum_probs=158.0
Q ss_pred CcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECC
Q 043685 285 TLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLS 364 (620)
Q Consensus 285 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 364 (620)
+...|+++++.++. +|..+ .+.++.|++++|++. .+|..+. .+|+.|++++|.++..+. .+ .++|+.|+++
T Consensus 179 ~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~-~l--~~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSIPA-TL--PDTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccCCh-hh--hccccEEECc
Confidence 45677777777664 34433 246788888888777 4555442 578888888887775432 22 2467888888
Q ss_pred CCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccC
Q 043685 365 RNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRL 444 (620)
Q Consensus 365 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 444 (620)
+|.+. .+|..+ ..+|+.|++++|.+. .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.++ .+
T Consensus 250 ~N~L~-~LP~~l--~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~L 319 (754)
T PRK15370 250 INRIT-ELPERL--PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-AL 319 (754)
T ss_pred CCccC-cCChhH--hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cC
Confidence 88776 344433 246788888888777 3454442 478888888887763 343332 46777788888777 44
Q ss_pred CccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCC
Q 043685 445 PTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLK 524 (620)
Q Consensus 445 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 524 (620)
|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|++. .+|..+ .++|+.|++++|+++. +|..+. .
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~-LP~~l~--~ 388 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN-LPENLP--A 388 (754)
T ss_pred Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC-CCHhHH--H
Confidence 4433 2577888888887764 444332 57888888888775 455544 2578888888887774 444443 3
Q ss_pred CCCEEECCCCcCccccCccc----cCCCCCCEEEccCCcCc
Q 043685 525 SLEMLNLSHNNLSGSIPNCF----DGMHGLSVIDISDNQLQ 561 (620)
Q Consensus 525 ~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~N~l~ 561 (620)
.|+.|++++|++. .+|+.+ ...+.+..+++.+|+++
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 5777788888876 344433 33467777888888776
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=4.7e-17 Score=175.44 Aligned_cols=247 Identities=26% Similarity=0.368 Sum_probs=166.7
Q ss_pred CCCCeeeccCCcCCCCCCCCCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCceeecC
Q 043685 261 TNLERLGLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLD 340 (620)
Q Consensus 261 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 340 (620)
.+...|+++++.++ .+|..+. ..++.|++++|.++. +|..+. .+|+.|++++|.+. .+|..+. ..|+.|+++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip-~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP-EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc-cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 34567888887776 3444433 568888888888874 344333 47888888888877 4555443 468888888
Q ss_pred CCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccC
Q 043685 341 GNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDI 420 (620)
Q Consensus 341 ~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 420 (620)
+|.+..++ ..+ ..+|+.|++++|++.. +|..+ .++|+.|++++|.++. +|..+ .++|+.|++++|.++. +
T Consensus 250 ~N~L~~LP-~~l--~s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 250 INRITELP-ERL--PSALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSLTA-L 319 (754)
T ss_pred CCccCcCC-hhH--hCCCCEEECcCCccCc-ccccc--CCCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCcccc-C
Confidence 88877443 222 2478888888888874 44444 2578888888888873 34333 2468888888888873 4
Q ss_pred ChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhcc
Q 043685 421 PKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLV 500 (620)
Q Consensus 421 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 500 (620)
|..+ .++|+.|++++|.++ .+|..+. ++|+.|++++|+++. +|..+. ++|++|++++|.+. .+|..+. .
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~-LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~ 388 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQITV-LPETLP--PTITTLDVSRNALT-NLPENLP--A 388 (754)
T ss_pred Cccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCCc-CChhhc--CCcCEEECCCCcCC-CCCHhHH--H
Confidence 4333 357888888888887 4565443 678888888888863 444443 57888888888886 4454443 3
Q ss_pred CCCEEeCCCCcCccccchh----ccCCCCCCEEECCCCcCc
Q 043685 501 QLSLLDASHNLFGGEIPFQ----ICSLKSLEMLNLSHNNLS 537 (620)
Q Consensus 501 ~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~ 537 (620)
.|+.|++++|++. .+|.. +..++.+..|++.+|+++
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 6788888888887 33433 334577788888888876
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=2.8e-19 Score=149.06 Aligned_cols=183 Identities=29% Similarity=0.434 Sum_probs=146.7
Q ss_pred ccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCC
Q 043685 376 WGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLE 455 (620)
Q Consensus 376 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 455 (620)
+..+.+++.|.+++|+++ ..|..+..+.+|+.|++.+|++. ..|..++.+++|+.|++.-|++. ..|..|+.+|.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 345778889999999998 55667888999999999999987 78888999999999999999988 8899999999999
Q ss_pred EEEccCCcCCc-chhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCC
Q 043685 456 YLDFSANRFNN-SVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHN 534 (620)
Q Consensus 456 ~L~ls~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 534 (620)
.||+.+|++.. .+|+.|..+..|+.|++++|.+ ..+|..++.+++|+.|.+.+|.+. ..|..++.+++|++|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 99999998865 4688888888999999999988 577888889999999999998887 67788888888888888888
Q ss_pred cCccccCccccCC---CCCCEEEccCCcCccCC
Q 043685 535 NLSGSIPNCFDGM---HGLSVIDISDNQLQGPV 564 (620)
Q Consensus 535 ~l~~~~~~~~~~l---~~L~~L~l~~N~l~~~~ 564 (620)
+++ .+|..++.+ .+=+...+.+|++...+
T Consensus 184 rl~-vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 184 RLT-VLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred eee-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 887 444333333 22234445555555443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=7.7e-19 Score=146.43 Aligned_cols=181 Identities=30% Similarity=0.421 Sum_probs=156.9
Q ss_pred ccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCC
Q 043685 400 IGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLH 479 (620)
Q Consensus 400 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~ 479 (620)
+..+..++.|.+++|+++ ..|..+..+.+|+.|++.+|++. .+|..++.+++|+.|+++-|++. ..|..|+.+|.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 345677889999999998 67777899999999999999998 88889999999999999999986 7788899999999
Q ss_pred EecCcCCcCcc-cchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCC
Q 043685 480 YLGLSNNQFVQ-ELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDN 558 (620)
Q Consensus 480 ~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 558 (620)
.|++.+|++.. .+|.-|..++.|+.|++++|.+. ..|..++++++|+.|.++.|.+. .+|..++.+..|++|++++|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 99999998865 56888889999999999999998 88889999999999999999987 67888889999999999999
Q ss_pred cCccCCCCCcccC---CCCccccCCCCCCC
Q 043685 559 QLQGPVPNSTAFR---NAPVEALEGNKGLC 585 (620)
Q Consensus 559 ~l~~~~~~~~~~~---~l~~~~l~~Np~~C 585 (620)
+++...|..+.+. +-.++.++.|||.-
T Consensus 184 rl~vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 184 RLTVLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred eeeecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 9998888765432 34467789999975
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.25 E-value=1.3e-11 Score=133.05 Aligned_cols=118 Identities=31% Similarity=0.552 Sum_probs=102.0
Q ss_pred CCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEcc
Q 043685 477 KLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDIS 556 (620)
Q Consensus 477 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 556 (620)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..++.+++|+.|++++|++++.+|+.+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47888999999988899999999999999999999999999899999999999999999999999999999999999999
Q ss_pred CCcCccCCCCCcc--cCCCCccccCCCCCCCCCCCCCCCCC
Q 043685 557 DNQLQGPVPNSTA--FRNAPVEALEGNKGLCGGVKGMQPCK 595 (620)
Q Consensus 557 ~N~l~~~~~~~~~--~~~l~~~~l~~Np~~C~~~~~~~~c~ 595 (620)
+|++++.+|.... +.++..+++.+|+..|+.+. ...|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~-l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG-LRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCC-CCCCc
Confidence 9999998886532 34566788999999998653 36674
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.21 E-value=6.3e-13 Score=131.67 Aligned_cols=195 Identities=35% Similarity=0.468 Sum_probs=157.4
Q ss_pred CCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEE
Q 043685 355 YPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLI 434 (620)
Q Consensus 355 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 434 (620)
+.--...|++.|++. .+|..+..+..|+.+.+..|.+. .+|.....+..|++++++.|++. ..|..+..++ |+.|.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344456788888887 56777777888999999999887 67778888999999999999987 6777777776 89999
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCcc
Q 043685 435 LRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGG 514 (620)
Q Consensus 435 l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 514 (620)
+++|+++ .+|..++..+.|..||.+.|.+. .+|..+.++.+|+.|++..|++. .+|+.+.. -.|..||+++|++.
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS- 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-
Confidence 9999998 78888888889999999999986 56677888999999999999885 45566664 46889999999998
Q ss_pred ccchhccCCCCCCEEECCCCcCccccCccc---cCCCCCCEEEccCCc
Q 043685 515 EIPFQICSLKSLEMLNLSHNNLSGSIPNCF---DGMHGLSVIDISDNQ 559 (620)
Q Consensus 515 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~N~ 559 (620)
.+|..|..|+.|++|-|.+|++. ..|..+ +...-.++|+.+-|+
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 78889999999999999999997 444332 233557888888885
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.19 E-value=2.3e-12 Score=120.64 Aligned_cols=184 Identities=26% Similarity=0.319 Sum_probs=98.0
Q ss_pred cCCCCCcEEECCCCccccCCCc----cccCCCCCCEEecCCCeecccCCh-------------hhhccCCCcEEEccCCc
Q 043685 377 GKCPKLGTLNVSMNNITGGIPR----EIGNSSQLQALDLSLNQIVGDIPK-------------ELGKSNSLTKLILRGNQ 439 (620)
Q Consensus 377 ~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~-------------~~~~l~~L~~L~l~~n~ 439 (620)
.++++|++++||.|.+....+. .+.++..|++|.+.+|.+...... ....-+.|+.+....|+
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 3445555666665555422222 233455566666666554311111 11233566666666666
Q ss_pred ccc----cCCccccCCCCCCEEEccCCcCCcc----hhhhhhCCCCCCEecCcCCcCccc----chhHhhhccCCCEEeC
Q 043685 440 LTG----RLPTEIGSLIKLEYLDFSANRFNNS----VPEILGNLLKLHYLGLSNNQFVQE----LPKELEKLVQLSLLDA 507 (620)
Q Consensus 440 l~~----~~~~~~~~~~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l 507 (620)
+.. .+...|...+.|+.+.++.|.+... ....+.++++|+.|+|.+|-++.. +...+..+++|+.|++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 542 1223445556666666666665432 234456667777777777766432 2334556666777777
Q ss_pred CCCcCccccchhc-----cCCCCCCEEECCCCcCccc----cCccccCCCCCCEEEccCCcC
Q 043685 508 SHNLFGGEIPFQI-----CSLKSLEMLNLSHNNLSGS----IPNCFDGMHGLSVIDISDNQL 560 (620)
Q Consensus 508 ~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l 560 (620)
++|.+......+| ...+.|+.|.+.+|.|+.. +..+....+.|..|+|++|.+
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 7776654433222 1356677777777766532 122233456677777777766
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.18 E-value=8.3e-12 Score=114.17 Aligned_cols=131 Identities=28% Similarity=0.298 Sum_probs=68.2
Q ss_pred CCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeC
Q 043685 428 NSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDA 507 (620)
Q Consensus 428 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 507 (620)
..|+++++++|.|+ .+.++..-.|.++.|++|+|.+... +.+..+++|+.|++++|.++.. ...=..+-+.+.|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhcCEeeeeh
Confidence 34555555555555 4444455555555555555555432 2245555555566655555322 122234445555566
Q ss_pred CCCcCccccchhccCCCCCCEEECCCCcCccccC-ccccCCCCCCEEEccCCcCccCC
Q 043685 508 SHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIP-NCFDGMHGLSVIDISDNQLQGPV 564 (620)
Q Consensus 508 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~ 564 (620)
++|.|.. ...+..+-+|..||+++|+|..... ..++.+|-|+.+.|.+|++.+.+
T Consensus 360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 360 AQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 6555542 1334455555666666666543321 34556666666666666666443
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.15 E-value=1.7e-12 Score=128.76 Aligned_cols=177 Identities=33% Similarity=0.458 Sum_probs=154.2
Q ss_pred CCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEE
Q 043685 378 KCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYL 457 (620)
Q Consensus 378 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 457 (620)
.+..-...+++.|++. .+|..+..+..|+.+.++.|.+. .+|..+..+..|++++++.|++. .+|..+..++ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 4555677889999998 67777888888999999999887 78888999999999999999998 7777777765 9999
Q ss_pred EccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCc
Q 043685 458 DFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLS 537 (620)
Q Consensus 458 ~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 537 (620)
.+++|+++ .+|.-++..+.|..|+.+.|.+ ..+|..+.++.+|+.|++.+|.+. ..|..+.. -.|.+||+++|+++
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis 224 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS 224 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee
Confidence 99999997 6677788889999999999999 467788999999999999999998 56666764 46899999999998
Q ss_pred cccCccccCCCCCCEEEccCCcCccC
Q 043685 538 GSIPNCFDGMHGLSVIDISDNQLQGP 563 (620)
Q Consensus 538 ~~~~~~~~~l~~L~~L~l~~N~l~~~ 563 (620)
.+|-.|..+..|++|-|.+|+++.+
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCCCC
Confidence 7899999999999999999999843
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.3e-11 Score=118.75 Aligned_cols=211 Identities=22% Similarity=0.166 Sum_probs=110.4
Q ss_pred CCCCCCEEECCCCcccCccC-ccccCCCCCcEEECCCCccccC--CCccccCCCCCCEEecCCCeecccCChh-hhccCC
Q 043685 354 IYPNLTFIDLSRNNFYGEIS-SNWGKCPKLGTLNVSMNNITGG--IPREIGNSSQLQALDLSLNQIVGDIPKE-LGKSNS 429 (620)
Q Consensus 354 ~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~ 429 (620)
.+.+|+++.+.++.+..... .....+++++.|+++.|-+... +......+|+|+.|+++.|++....... -..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 45667777776665542221 2445567777777777765422 1223455677777777777664211111 123556
Q ss_pred CcEEEccCCccccc-CCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccc-hhHhhhccCCCEEeC
Q 043685 430 LTKLILRGNQLTGR-LPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQEL-PKELEKLVQLSLLDA 507 (620)
Q Consensus 430 L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l 507 (620)
|+.|.+++|.++.. +......+|+|+.|++..|..-........-+..|+.|+|++|++.+.. ......++.|..|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 66667777666511 1222344566666666666321122222233445666666666664321 123455666666666
Q ss_pred CCCcCcccc-chh-----ccCCCCCCEEECCCCcCccccC-ccccCCCCCCEEEccCCcCccCC
Q 043685 508 SHNLFGGEI-PFQ-----ICSLKSLEMLNLSHNNLSGSIP-NCFDGMHGLSVIDISDNQLQGPV 564 (620)
Q Consensus 508 ~~n~l~~~~-~~~-----~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~ 564 (620)
+.|.+..+- |.. ....++|++|++..|++...-. ..+..+++|+.|.+..|+++...
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET 342 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccc
Confidence 666665431 111 2345666666666666642211 22334456666666666666443
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.13 E-value=9.9e-11 Score=120.88 Aligned_cols=198 Identities=37% Similarity=0.469 Sum_probs=106.9
Q ss_pred eeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCC-CCcEEECCCCccccCCCccccCCCCCCEEecCCC
Q 043685 336 RVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCP-KLGTLNVSMNNITGGIPREIGNSSQLQALDLSLN 414 (620)
Q Consensus 336 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 414 (620)
.+....+.+... ......++.++.|++.+|.++.+. ....... +|+.|++++|.+. .++.....+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~-~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIP-PLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccCc-cccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 355555554322 122333456666666666666332 2223332 6666666666665 33334556666666666666
Q ss_pred eecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchh
Q 043685 415 QIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPK 494 (620)
Q Consensus 415 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 494 (620)
++. .++......+.|+.|++++|++. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|++.. .+.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccc
Confidence 665 33333335566666666666666 44444334444666666666432 233445555566666666665532 234
Q ss_pred HhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCc
Q 043685 495 ELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPN 542 (620)
Q Consensus 495 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 542 (620)
.+..+++++.|++++|.++.... ++.+.+++.|++++|.+....|.
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 45555666666666666664333 55566666666666666544443
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=6.9e-11 Score=104.09 Aligned_cols=124 Identities=31% Similarity=0.338 Sum_probs=30.9
Q ss_pred cCCCcEEEccCCcccccCCcccc-CCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEE
Q 043685 427 SNSLTKLILRGNQLTGRLPTEIG-SLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLL 505 (620)
Q Consensus 427 l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 505 (620)
+.++++|++++|.|+ .+. .+. .+.+|+.|++++|.++.. +.+..++.|+.|++++|.++...+.....+++|+.|
T Consensus 18 ~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 334555555555555 221 222 344555555555555432 124445555555555555543322111345555555
Q ss_pred eCCCCcCccccc-hhccCCCCCCEEECCCCcCccccC---ccccCCCCCCEEE
Q 043685 506 DASHNLFGGEIP-FQICSLKSLEMLNLSHNNLSGSIP---NCFDGMHGLSVID 554 (620)
Q Consensus 506 ~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~ 554 (620)
++++|+|..... ..+..+++|+.|++.+|++....- ..+..+|+|+.||
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 555555543211 334445555555555555542211 1233445555554
No 31
>PLN03150 hypothetical protein; Provisional
Probab=99.12 E-value=2.2e-10 Score=123.73 Aligned_cols=118 Identities=29% Similarity=0.510 Sum_probs=84.5
Q ss_pred cccceeeCCC-----CCEEEEEcCCCCCccccCCCCCCCCCCCCEEECCCCCCCCcCCccccCCCCCCEEECCCCCCccc
Q 043685 23 AWYGISCNDA-----GRVINISLRNTGLSGTLRDLSFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGK 97 (620)
Q Consensus 23 ~~~~~~~~~~-----~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L~~~~i~~~ 97 (620)
.|.|+.|... ..++.|+|+++.+.+.+ +..+..+++|+.|+|++|.+.+.+|..+..+++|++|+|++|.+.
T Consensus 403 ~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~i-p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~ls-- 479 (623)
T PLN03150 403 PWSGADCQFDSTKGKWFIDGLGLDNQGLRGFI-PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN-- 479 (623)
T ss_pred ccccceeeccCCCCceEEEEEECCCCCccccC-CHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCC--
Confidence 6999999632 14778888888887776 666777788888888888777777777777777777777777765
Q ss_pred CCCCCCCCcEEEccCCcCCCcCcccccCCCCCCEEEccCCcCCcccCccCCCC-CCCCEEeCCCCC
Q 043685 98 IPLELSSIEELFLYSNHLNESFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNL-KFLFELDLSNNQ 162 (620)
Q Consensus 98 ~~~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l-~~L~~L~l~~~~ 162 (620)
+.+|+.++++++|++|+|++|.+++.+|..+... .++..+++.+|.
T Consensus 480 -------------------g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 480 -------------------GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred -------------------CCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 4556667777777777777777776677666543 345566666654
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.12 E-value=8.3e-12 Score=116.92 Aligned_cols=232 Identities=21% Similarity=0.238 Sum_probs=158.0
Q ss_pred cCCCCccEEEecCccccccc----cccccccCCCceeecCCCc---cccc-------cCcccCCCCCCCEEECCCCcccC
Q 043685 305 CRGGALEIFIVDEYRFQGTI----PTSLRNCTSLIRVRLDGNN---LTGN-------ISEALGIYPNLTFIDLSRNNFYG 370 (620)
Q Consensus 305 ~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~---l~~~-------~~~~~~~l~~L~~L~l~~n~l~~ 370 (620)
..+..++++++++|.+.... ...+.+.++|+..++++-- .... ...++...|+|++++||+|.+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 33455566666666554322 2234445566666665421 1111 12345567789999999998876
Q ss_pred ccCccc----cCCCCCcEEECCCCccccCC-------------CccccCCCCCCEEecCCCeeccc----CChhhhccCC
Q 043685 371 EISSNW----GKCPKLGTLNVSMNNITGGI-------------PREIGNSSQLQALDLSLNQIVGD----IPKELGKSNS 429 (620)
Q Consensus 371 ~~~~~~----~~~~~L~~L~l~~n~l~~~~-------------~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~ 429 (620)
..+..| ..+..|++|.+.+|.+...- ......-+.|+++...+|++... +...|...+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 544433 46788999999999876211 12234567899999999987632 2344667789
Q ss_pred CcEEEccCCccccc----CCccccCCCCCCEEEccCCcCCcc----hhhhhhCCCCCCEecCcCCcCcccchhH----h-
Q 043685 430 LTKLILRGNQLTGR----LPTEIGSLIKLEYLDFSANRFNNS----VPEILGNLLKLHYLGLSNNQFVQELPKE----L- 496 (620)
Q Consensus 430 L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~----l- 496 (620)
|+.+.+..|.|... +...+..++.|+.|||.+|-++.. +...+..+++|+.|++++|.+...-... +
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~ 266 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALK 266 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHh
Confidence 99999999987622 334577899999999999988753 4556777889999999999886543322 2
Q ss_pred hhccCCCEEeCCCCcCccc----cchhccCCCCCCEEECCCCcC
Q 043685 497 EKLVQLSLLDASHNLFGGE----IPFQICSLKSLEMLNLSHNNL 536 (620)
Q Consensus 497 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l 536 (620)
...|+|++|.+.+|.|+.. +.......+.|+.|+|++|++
T Consensus 267 ~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 267 ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 3468999999999998743 223345678999999999999
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.11 E-value=1.6e-11 Score=112.38 Aligned_cols=200 Identities=23% Similarity=0.173 Sum_probs=132.2
Q ss_pred ccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEcc-CCcccccCCccccCCCCC
Q 043685 376 WGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILR-GNQLTGRLPTEIGSLIKL 454 (620)
Q Consensus 376 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~~~L 454 (620)
+..+.+|+.+.++.|.-..+ ......-|.|+.+.+.+..+. ..|..+ -...+....-+ +.-.+|.....+..+..|
T Consensus 210 l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~-~~~~l~-pe~~~~D~~~~E~~t~~G~~~~~~dTWq~L 286 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQ-DVPSLL-PETILADPSGSEPSTSNGSALVSADTWQEL 286 (490)
T ss_pred hHHhhhhheeeeeccchhhe-eceeecCchhheeeeeccccc-cccccc-chhhhcCccCCCCCccCCceEEecchHhhh
Confidence 34455666666666654311 122223355666666554333 111100 00111111111 111223333445566789
Q ss_pred CEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCC
Q 043685 455 EYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHN 534 (620)
Q Consensus 455 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 534 (620)
+++|+|+|.++ .+.+...-.|.++.|++++|.+... ..+..+++|+.||+++|.++. ....-..+-+.+.|.|++|
T Consensus 287 telDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 287 TELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhh
Confidence 99999999997 4556677889999999999999655 348999999999999999984 3344457788999999999
Q ss_pred cCccccCccccCCCCCCEEEccCCcCccCCCC--CcccCCCCccccCCCCCC
Q 043685 535 NLSGSIPNCFDGMHGLSVIDISDNQLQGPVPN--STAFRNAPVEALEGNKGL 584 (620)
Q Consensus 535 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~--~~~~~~l~~~~l~~Np~~ 584 (620)
.|... ..+..+-+|..||+++|+|...... -+.++-++.+.+.+||..
T Consensus 363 ~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 363 KIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 98644 4567788999999999999754433 245788899999999974
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=1.4e-10 Score=119.83 Aligned_cols=176 Identities=36% Similarity=0.501 Sum_probs=88.2
Q ss_pred CCCcEEECCCCccccCCCccccCCC-CCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEE
Q 043685 380 PKLGTLNVSMNNITGGIPREIGNSS-QLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLD 458 (620)
Q Consensus 380 ~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 458 (620)
+.++.|++.+|.+.. ++....... +|++|++++|++. .++..+..++.|+.|++++|++. .++......+.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 455555555555552 222333332 5555555555554 33334455555555666655555 3333333455555556
Q ss_pred ccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCcc
Q 043685 459 FSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSG 538 (620)
Q Consensus 459 ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 538 (620)
+++|.+.. +|........|+++.+++|... ..+..+..+..+..+.+.+|++. ..+..++.+++++.|++++|.++.
T Consensus 193 ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 193 LSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred ccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc
Confidence 65555542 2222233334555555555331 22334555555555555555554 223444555555556666555553
Q ss_pred ccCccccCCCCCCEEEccCCcCccC
Q 043685 539 SIPNCFDGMHGLSVIDISDNQLQGP 563 (620)
Q Consensus 539 ~~~~~~~~l~~L~~L~l~~N~l~~~ 563 (620)
+.+ +....+++.|++++|.++..
T Consensus 270 i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 270 ISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccc--ccccCccCEEeccCcccccc
Confidence 322 44555555566655555544
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.5e-11 Score=118.37 Aligned_cols=208 Identities=26% Similarity=0.216 Sum_probs=97.5
Q ss_pred ccCCCceeecCCCccccccC-cccCCCCCCCEEECCCCcccCc--cCccccCCCCCcEEECCCCccccCCCc-cccCCCC
Q 043685 330 NCTSLIRVRLDGNNLTGNIS-EALGIYPNLTFIDLSRNNFYGE--ISSNWGKCPKLGTLNVSMNNITGGIPR-EIGNSSQ 405 (620)
Q Consensus 330 ~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~ 405 (620)
++.+|+++.+.++.+..... .....+++++.||+++|-+... +......+|+|+.|+++.|++...... .-..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 34455555555554442211 2334455566666665544321 112233455666666666655422211 1123455
Q ss_pred CCEEecCCCeeccc-CChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcch-hhhhhCCCCCCEecC
Q 043685 406 LQALDLSLNQIVGD-IPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSV-PEILGNLLKLHYLGL 483 (620)
Q Consensus 406 L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~-~~~l~~l~~L~~L~l 483 (620)
|+.|.++.|.++.. +......+|+|+.|.+++|............+..|++|||++|++.+.. ......++.|..|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 66666666655421 1222344566666666666322122222333445666666666554321 123345556666666
Q ss_pred cCCcCccc-chhH-----hhhccCCCEEeCCCCcCccc-cchhccCCCCCCEEECCCCcCc
Q 043685 484 SNNQFVQE-LPKE-----LEKLVQLSLLDASHNLFGGE-IPFQICSLKSLEMLNLSHNNLS 537 (620)
Q Consensus 484 ~~n~l~~~-~~~~-----l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~ 537 (620)
+.|.+... .|.. ...+++|+.|+++.|++... .-..+..+++|+.|.+..|.++
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 66655432 1211 24456666666666666421 1123344555555555555554
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=3.8e-10 Score=99.43 Aligned_cols=125 Identities=30% Similarity=0.332 Sum_probs=36.7
Q ss_pred CCCCCcEEECCCCccccCCCcccc-CCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccc-cCCCCCC
Q 043685 378 KCPKLGTLNVSMNNITGGIPREIG-NSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEI-GSLIKLE 455 (620)
Q Consensus 378 ~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~ 455 (620)
+..++++|++++|.|+.+ +.+. .+.+|+.|++++|.++.. ..+..++.|++|++++|+++ .+...+ ..+|+|+
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence 445567777777776632 2233 356677777777776632 23556666666677666666 333223 2456666
Q ss_pred EEEccCCcCCcc-hhhhhhCCCCCCEecCcCCcCcccc---hhHhhhccCCCEEeC
Q 043685 456 YLDFSANRFNNS-VPEILGNLLKLHYLGLSNNQFVQEL---PKELEKLVQLSLLDA 507 (620)
Q Consensus 456 ~L~ls~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~l 507 (620)
+|++++|++.+. ....+..+++|+.|++.+|++.... ...+..+|+|+.||-
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 666666666442 1234455666666666666664321 123455566665553
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.92 E-value=5.7e-10 Score=123.02 Aligned_cols=123 Identities=27% Similarity=0.316 Sum_probs=54.8
Q ss_pred CCCCEEECCCCCCCCcCCccccCCCCCCEEECCCCC--Cc---ccCCCCCCCCcEEEccCCcCCCcCcccccCCCCCCEE
Q 043685 58 PQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQ--LF---GKIPLELSSIEELFLYSNHLNESFPPFLGNLSNIVRL 132 (620)
Q Consensus 58 ~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L~~~~--i~---~~~~~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L 132 (620)
...|...+-+|.+. ..+.. ..+++|++|-+..|. +. +.....++.|++||+++|.-...+|..++.+-+||+|
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 34455555555542 11211 222356666555553 11 1112234445555555444434444455555555555
Q ss_pred EccCCcCCcccCccCCCCCCCCEEeCCCCCCcCCCCcccCCCCCCcEEEcc
Q 043685 133 YINNNSLSSSIPTNIGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLY 183 (620)
Q Consensus 133 ~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 183 (620)
+++++.++ .+|..+.++++|.+|++..+......+.....+.+||+|.+.
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 55555444 444445555555555554444332333334444445544443
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.92 E-value=5.8e-10 Score=122.96 Aligned_cols=176 Identities=24% Similarity=0.284 Sum_probs=96.7
Q ss_pred CCCCEEECCCCC--CCCcCCccccCCCCCCEEECCCCCCcccCCC---CCCCCcEEEccCCcCCCcCcccccCCCCCCEE
Q 043685 58 PQLEYLDLSLNG--LFGTIPSQIGNLSKLSYISLDSNQLFGKIPL---ELSSIEELFLYSNHLNESFPPFLGNLSNIVRL 132 (620)
Q Consensus 58 ~~L~~L~Ls~~~--i~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~---~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L 132 (620)
+.|+.|-+..|. +.....+.|..++.|++|||++|.-.+.+|. .+-+||+|++++..+. .+|..+++++.|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 345555555554 3322333455555666666655544445554 2345555556655553 688999999999999
Q ss_pred EccCCcCCcccCccCCCCCCCCEEeCCCCCCc--CCCCcccCCCCCCcEEEcccccccc-cCCCCCCcee--ecEEEccC
Q 043685 133 YINNNSLSSSIPTNIGNLKFLFELDLSNNQLG--GSIPLSFGNLSNLARLCLYKNLLIG-SIPSSLGNLK--LIDLKLSS 207 (620)
Q Consensus 133 ~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~--~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~--L~~L~l~~ 207 (620)
++..+......|.....+.+||+|.+...... ......+..+.+|+.+......... .....+..+. .+.+.+.+
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~ 703 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEG 703 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcc
Confidence 99988765455666667999999998775422 1222334555555555553332200 0001111111 22333322
Q ss_pred CccccccCCCCCCCCCCCEEEccCCcCC
Q 043685 208 NQLTGYIPYSLGNVTSLSSLLLAKNKLY 235 (620)
Q Consensus 208 ~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 235 (620)
+... ..+..+..+.+|+.|.+.++...
T Consensus 704 ~~~~-~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 704 CSKR-TLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred cccc-eeecccccccCcceEEEEcCCCc
Confidence 2222 23345667777777777777653
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=8.5e-10 Score=79.78 Aligned_cols=61 Identities=36% Similarity=0.514 Sum_probs=49.3
Q ss_pred cCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcC
Q 043685 500 VQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQL 560 (620)
Q Consensus 500 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 560 (620)
|+|+.|++++|+++...+..|..+++|+.|++++|+++.+.+++|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677888888888877767888888888888888888877778888888888888888875
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.87 E-value=2.2e-10 Score=118.34 Aligned_cols=246 Identities=26% Similarity=0.235 Sum_probs=140.8
Q ss_pred CCCCccEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEE
Q 043685 306 RGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTL 385 (620)
Q Consensus 306 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 385 (620)
.+..++.+.+..+.+.. .-..+..+.+|..+++.+|.+..+.. .+..+++|++|++++|.|+... .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhh
Confidence 34555555666665542 22334556777777777777764422 1556677777777777776542 33445567777
Q ss_pred ECCCCccccCCCccccCCCCCCEEecCCCeecccCC-hhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcC
Q 043685 386 NVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIP-KELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRF 464 (620)
Q Consensus 386 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l 464 (620)
++++|.+... ..+..++.|+.+++++|.+....+ . ...+.+++.+.+.+|.+... ..+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 7777777632 234456777777777777663322 1 35666777777777766522 2233334444456666666
Q ss_pred CcchhhhhhCCC--CCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccc---
Q 043685 465 NNSVPEILGNLL--KLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGS--- 539 (620)
Q Consensus 465 ~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--- 539 (620)
+..-+ +..+. +|+.+++++|.+.. .+..+..+..+..|++..|++... ..+...+.+..+....|.+...
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAI 295 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhh
Confidence 43211 11222 26777777777743 224456667777777777776633 2244455566666666665422
Q ss_pred cCcc-ccCCCCCCEEEccCCcCccCCC
Q 043685 540 IPNC-FDGMHGLSVIDISDNQLQGPVP 565 (620)
Q Consensus 540 ~~~~-~~~l~~L~~L~l~~N~l~~~~~ 565 (620)
.... ....+.+..+.+.+|++....+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 296 SQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred hccccccccccccccccccCccccccc
Confidence 1111 3455677777777777765544
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.82 E-value=4.3e-10 Score=116.21 Aligned_cols=241 Identities=29% Similarity=0.254 Sum_probs=155.6
Q ss_pred ccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEE
Q 043685 330 NCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQAL 409 (620)
Q Consensus 330 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 409 (620)
.+..++.+.+..|.+.. ....+..+++|+.+++.+|.+..+.. .+..+++|+.|++++|.|+... .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhh
Confidence 45666666677776664 22346677888888888888774422 2566788888888888887543 34556668888
Q ss_pred ecCCCeecccCChhhhccCCCcEEEccCCcccccCCcc-ccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcC
Q 043685 410 DLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTE-IGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQF 488 (620)
Q Consensus 410 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l 488 (620)
++.+|.+... ..+..++.|+.+++++|++... ... ...+.+++.+.+.+|.+... ..+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~i-e~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDI-ENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhh-hhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 8888887633 3455577888888888887733 221 35677788888888877543 2233344555557777777
Q ss_pred cccchhHhhhccC--CCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccC---
Q 043685 489 VQELPKELEKLVQ--LSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGP--- 563 (620)
Q Consensus 489 ~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~--- 563 (620)
...-+ +..+.. |+.+++++|++.. .+..+..+..+..|+++.|++... ..+...+.+..+....|++...
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAI 295 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhh
Confidence 54422 333333 7888888888873 335566778888888888887654 3345566777777777776522
Q ss_pred CCC--CcccCCCCccccCCCCCC
Q 043685 564 VPN--STAFRNAPVEALEGNKGL 584 (620)
Q Consensus 564 ~~~--~~~~~~l~~~~l~~Np~~ 584 (620)
... ....+.+..+.+.+||..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 296 SQEYITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred hccccccccccccccccccCccc
Confidence 111 233556667777777654
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.78 E-value=2.3e-10 Score=116.89 Aligned_cols=198 Identities=28% Similarity=0.287 Sum_probs=134.3
Q ss_pred CCCCcEEECCCCccccCC-CccccCCCCCCEEecCCCeecccCChhhhc-cCCCcEEEccCCccc----------ccCCc
Q 043685 379 CPKLGTLNVSMNNITGGI-PREIGNSSQLQALDLSLNQIVGDIPKELGK-SNSLTKLILRGNQLT----------GRLPT 446 (620)
Q Consensus 379 ~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~l~----------~~~~~ 446 (620)
+++++.+.+-.-.-.+.. |-.+..+.+|+.|.+++|.+.. . ..+.. -..|++|.-.+ .+. +.+..
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~-~-~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST-A-KGLQELRHQLEKLICHN-SLDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh-h-hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhcccccc
Confidence 344455544333222111 4455677889999999998863 1 11111 12344443322 111 11112
Q ss_pred cccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCC
Q 043685 447 EIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSL 526 (620)
Q Consensus 447 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 526 (620)
++ ..-.|...+.+.|.++ .....+.-++.++.|+|++|++++. ..+..++.|++|||++|.++.+.-..-.++. |
T Consensus 160 s~-~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L 234 (1096)
T KOG1859|consen 160 SP-VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-L 234 (1096)
T ss_pred ch-hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-h
Confidence 21 1246788888999986 5667788889999999999999765 4788999999999999999855444444554 9
Q ss_pred CEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCC--CcccCCCCccccCCCCCCCC
Q 043685 527 EMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPN--STAFRNAPVEALEGNKGLCG 586 (620)
Q Consensus 527 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~--~~~~~~l~~~~l~~Np~~C~ 586 (620)
+.|.+++|.++.. ..+.++.+|+.||+++|-|.+-... .+.+..+..+.++|||.-|.
T Consensus 235 ~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 235 QLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred eeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 9999999998755 3567889999999999998754332 23466788999999999885
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=3.6e-09 Score=76.48 Aligned_cols=61 Identities=36% Similarity=0.452 Sum_probs=40.2
Q ss_pred CCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcC
Q 043685 476 LKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNL 536 (620)
Q Consensus 476 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 536 (620)
|+|++|++++|++....+..|.++++|++|++++|+++...+.+|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566666666666555555666666777777776666666666666777777777776654
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.57 E-value=5.3e-10 Score=114.23 Aligned_cols=101 Identities=31% Similarity=0.326 Sum_probs=41.9
Q ss_pred CCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcC
Q 043685 406 LQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSN 485 (620)
Q Consensus 406 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~ 485 (620)
|...+.+.|.+. .....+.-++.++.|++++|+++.. ..+..++.|++|||++|.++....-....+ +|+.|++++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hheeeeecc
Confidence 334444444443 3333344444445555555544422 134444445555555544432211111112 244444444
Q ss_pred CcCcccchhHhhhccCCCEEeCCCCcC
Q 043685 486 NQFVQELPKELEKLVQLSLLDASHNLF 512 (620)
Q Consensus 486 n~l~~~~~~~l~~l~~L~~L~l~~n~l 512 (620)
|.++.. ..+.++.+|+.||+++|-+
T Consensus 242 N~l~tL--~gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccchhHhhh
Confidence 444322 2344444444444444443
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=5.1e-09 Score=96.17 Aligned_cols=107 Identities=23% Similarity=0.246 Sum_probs=53.3
Q ss_pred CCceeecCCCcccc-ccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCc-cccC-CCccccCCCCCCEE
Q 043685 333 SLIRVRLDGNNLTG-NISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNN-ITGG-IPREIGNSSQLQAL 409 (620)
Q Consensus 333 ~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L 409 (620)
.|+.++++...++. .....+..+.+|+.|.+.++++.+.+...+.+-.+|+.++++.|. ++.. ..-.+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 45556665555542 122234455566666666666665555555555666666666553 2211 11234556666666
Q ss_pred ecCCCeecccCChhh--hccCCCcEEEccCCc
Q 043685 410 DLSLNQIVGDIPKEL--GKSNSLTKLILRGNQ 439 (620)
Q Consensus 410 ~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~ 439 (620)
+++.|.+........ .--++|+.|+++|++
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 666665543221111 112455555555553
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.37 E-value=4.1e-08 Score=79.73 Aligned_cols=135 Identities=20% Similarity=0.251 Sum_probs=94.4
Q ss_pred CCCEEEccCCcCCc--chhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEE
Q 043685 453 KLEYLDFSANRFNN--SVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLN 530 (620)
Q Consensus 453 ~L~~L~ls~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 530 (620)
.+..++++.|++.- ..+..+.....|+..++++|.+.+..+..-..++..+.|++++|.|+ ..|..+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 34566777777642 12344556667888888998885444444455668888999999988 6677788999999999
Q ss_pred CCCCcCccccCccccCCCCCCEEEccCCcCccCCCCCcccCC-CCccccCCCCCCCCCCCC
Q 043685 531 LSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNSTAFRN-APVEALEGNKGLCGGVKG 590 (620)
Q Consensus 531 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-l~~~~l~~Np~~C~~~~~ 590 (620)
++.|++. ..|..+..+.+|-.||..+|.+.. +|.....++ ...+.+.++||--+++.+
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e-id~dl~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARAE-IDVDLFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCcccc-CcHHHhccccHHHHHhcCCcccccCccc
Confidence 9999987 567777778889999999998874 443333333 334566777776555443
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=9.8e-08 Score=87.89 Aligned_cols=183 Identities=17% Similarity=0.085 Sum_probs=84.0
Q ss_pred cCCCceeecCCCcccc--ccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCcccc-CCCccccCCCCCC
Q 043685 331 CTSLIRVRLDGNNLTG--NISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITG-GIPREIGNSSQLQ 407 (620)
Q Consensus 331 l~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~ 407 (620)
++.++++++.+|.++. .+...+.++|.|+.|+++.|.+...+...-.-..+|+.|.+.+..+.- .....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4567777777776652 222334566777777777776654433221234566777776665541 1222345566666
Q ss_pred EEecCCCeecccCC--hhhh-ccCCCcEEEccCCccccc--CCccccCCCCCCEEEccCCcCCcc-hhhhhhCCCCCCEe
Q 043685 408 ALDLSLNQIVGDIP--KELG-KSNSLTKLILRGNQLTGR--LPTEIGSLIKLEYLDFSANRFNNS-VPEILGNLLKLHYL 481 (620)
Q Consensus 408 ~L~l~~n~~~~~~~--~~~~-~l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~ls~n~l~~~-~~~~l~~l~~L~~L 481 (620)
+|+++.|....... .... .-+.++++...+|...-. .-..-.-+|++..+-+..|++.+. ....+...|.+..|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 66666663321100 0000 112333344333332100 000111234455555555554332 11223334444555
Q ss_pred cCcCCcCccc-chhHhhhccCCCEEeCCCCcCc
Q 043685 482 GLSNNQFVQE-LPKELEKLVQLSLLDASHNLFG 513 (620)
Q Consensus 482 ~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~ 513 (620)
+|+.+++..- .-+.+.++++|..|.++++.+.
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 5555555321 1133455555555555555544
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2e-08 Score=92.30 Aligned_cols=157 Identities=20% Similarity=0.201 Sum_probs=73.2
Q ss_pred ccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCc-cccc-CCccccCCCCCCEEEccCCcCCcchhhhh-h-CC
Q 043685 400 IGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQ-LTGR-LPTEIGSLIKLEYLDFSANRFNNSVPEIL-G-NL 475 (620)
Q Consensus 400 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~~~~L~~L~ls~n~l~~~~~~~l-~-~l 475 (620)
+..+.+|+.|.+.++++.+.+...++.-.+|+.|+++.+. ++.. ..--+.+++.|.+|+|+.|.+......++ . --
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 3444445555555554444444444444455555555442 2211 01123445555555555555433221111 1 12
Q ss_pred CCCCEecCcCCcCc---ccchhHhhhccCCCEEeCCCCc-CccccchhccCCCCCCEEECCCCcCccccCcc---ccCCC
Q 043685 476 LKLHYLGLSNNQFV---QELPKELEKLVQLSLLDASHNL-FGGEIPFQICSLKSLEMLNLSHNNLSGSIPNC---FDGMH 548 (620)
Q Consensus 476 ~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~ 548 (620)
++|+.|+++|+.-. ..+..-...+++|.+|||++|. ++......|-+++.|++|.++.|.. ++|+. |...|
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~p 363 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKP 363 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCc
Confidence 45566666655211 1111223456666666666652 3332333445566666666666653 34433 34446
Q ss_pred CCCEEEccCC
Q 043685 549 GLSVIDISDN 558 (620)
Q Consensus 549 ~L~~L~l~~N 558 (620)
+|.+||+.++
T Consensus 364 sl~yLdv~g~ 373 (419)
T KOG2120|consen 364 SLVYLDVFGC 373 (419)
T ss_pred ceEEEEeccc
Confidence 6777776665
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=2.9e-07 Score=84.82 Aligned_cols=226 Identities=18% Similarity=0.107 Sum_probs=135.3
Q ss_pred cCCCceeecCCCcccccc-Cccc-CCCCCCCEEECCCCcccCc--cCccccCCCCCcEEECCCCccccCCCccccCCCCC
Q 043685 331 CTSLIRVRLDGNNLTGNI-SEAL-GIYPNLTFIDLSRNNFYGE--ISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQL 406 (620)
Q Consensus 331 l~~L~~L~l~~~~l~~~~-~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 406 (620)
...++-+.+.++.+.... ...| ...+.++++|+.+|.|++. +...+.++|.|+.|+++.|.+...+...-....+|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 344555666666654221 1112 3467788999999988753 33456788999999999998874432221356788
Q ss_pred CEEecCCCeeccc-CChhhhccCCCcEEEccCCccccc--CCccccC-CCCCCEEEccCCcCCc--chhhhhhCCCCCCE
Q 043685 407 QALDLSLNQIVGD-IPKELGKSNSLTKLILRGNQLTGR--LPTEIGS-LIKLEYLDFSANRFNN--SVPEILGNLLKLHY 480 (620)
Q Consensus 407 ~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~-~~~L~~L~ls~n~l~~--~~~~~l~~l~~L~~ 480 (620)
+.|-+.+..+.-. ....+..+|.+++|+++.|..... -...... -+.+.+|....|.... ..-..-..+|++..
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence 8888888766421 223456678888888888854311 1112222 1345556555554321 01112234567888
Q ss_pred ecCcCCcCcccc-hhHhhhccCCCEEeCCCCcCccc-cchhccCCCCCCEEECCCCcCccccCc------cccCCCCCCE
Q 043685 481 LGLSNNQFVQEL-PKELEKLVQLSLLDASHNLFGGE-IPFQICSLKSLEMLNLSHNNLSGSIPN------CFDGMHGLSV 552 (620)
Q Consensus 481 L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~ 552 (620)
+.+..|++.+.. -+.+..++.+-.|+|+.|+|.+. .-+++.++++|..|.++++++....-. .++.+++++.
T Consensus 204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~v 283 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQV 283 (418)
T ss_pred eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEE
Confidence 888888775432 23455667777888888887643 225667788888888888887543221 1345666666
Q ss_pred EEcc
Q 043685 553 IDIS 556 (620)
Q Consensus 553 L~l~ 556 (620)
|+=+
T Consensus 284 LNGs 287 (418)
T KOG2982|consen 284 LNGS 287 (418)
T ss_pred ecCc
Confidence 6544
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.14 E-value=1.7e-06 Score=78.93 Aligned_cols=217 Identities=24% Similarity=0.235 Sum_probs=96.4
Q ss_pred cCCCceeecCCCccccccC----cccCCCCCCCEEECCCCccc---CccC-------ccccCCCCCcEEECCCCccccCC
Q 043685 331 CTSLIRVRLDGNNLTGNIS----EALGIYPNLTFIDLSRNNFY---GEIS-------SNWGKCPKLGTLNVSMNNITGGI 396 (620)
Q Consensus 331 l~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~l~~n~l~---~~~~-------~~~~~~~~L~~L~l~~n~l~~~~ 396 (620)
+..+.++++++|.+..... ..+..-.+|+..+++.-... +.++ ..+.+||+|+..+++.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4567777777776653222 22334455666665542111 1111 23345666666666666655333
Q ss_pred Cc----cccCCCCCCEEecCCCeecccCCh----hhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcch
Q 043685 397 PR----EIGNSSQLQALDLSLNQIVGDIPK----ELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSV 468 (620)
Q Consensus 397 ~~----~~~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 468 (620)
|. .+++-+.|++|.+++|.+...... ++.++ ..| .-...-|.|++++...|++..-.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l--------a~n-------KKaa~kp~Le~vicgrNRlengs 173 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL--------AYN-------KKAADKPKLEVVICGRNRLENGS 173 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH--------HHH-------hhhccCCCceEEEeccchhccCc
Confidence 32 234445566666666544311111 11110 000 00112344555555555543211
Q ss_pred ----hhhhhCCCCCCEecCcCCcCccc-----chhHhhhccCCCEEeCCCCcCccc----cchhccCCCCCCEEECCCCc
Q 043685 469 ----PEILGNLLKLHYLGLSNNQFVQE-----LPKELEKLVQLSLLDASHNLFGGE----IPFQICSLKSLEMLNLSHNN 535 (620)
Q Consensus 469 ----~~~l~~l~~L~~L~l~~n~l~~~-----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~ 535 (620)
...+..-..|+.+.+..|.+... ....+..+++|+.||+.+|.++.. ...++...+.|++|.+..|-
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 11122223555555555554322 112234455666666666655422 12233444555666666665
Q ss_pred CccccCcc----c--cCCCCCCEEEccCCcCcc
Q 043685 536 LSGSIPNC----F--DGMHGLSVIDISDNQLQG 562 (620)
Q Consensus 536 l~~~~~~~----~--~~l~~L~~L~l~~N~l~~ 562 (620)
++...... | ...|.|+.|-..+|.+.+
T Consensus 254 ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 254 LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 54332211 1 123555666666665543
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.04 E-value=3.3e-07 Score=74.61 Aligned_cols=133 Identities=22% Similarity=0.247 Sum_probs=72.1
Q ss_pred CcEEEccCCcccccCCcc---ccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEe
Q 043685 430 LTKLILRGNQLTGRLPTE---IGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLD 506 (620)
Q Consensus 430 L~~L~l~~n~l~~~~~~~---~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 506 (620)
+..+++++|++. .++.. +.....|+..+|++|.+....+..-...+.++.|++++|.+. .+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 344555555543 22222 223334555566666665444443344556677777777763 4555677777777777
Q ss_pred CCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCC
Q 043685 507 ASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPN 566 (620)
Q Consensus 507 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 566 (620)
++.|.+. ..|..+..+.+|-.|+..+|.+..+..+.| .-...-..++.++++.+..+.
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~-~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLF-YSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHh-ccccHHHHHhcCCcccccCcc
Confidence 7777766 455555556667777777776653322321 112223334566666655543
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.98 E-value=1.1e-06 Score=79.98 Aligned_cols=208 Identities=18% Similarity=0.129 Sum_probs=119.7
Q ss_pred CCCccEEEecCcccccccccc----ccccCCCceeecCCCccc----------cccCcccCCCCCCCEEECCCCcccCcc
Q 043685 307 GGALEIFIVDEYRFQGTIPTS----LRNCTSLIRVRLDGNNLT----------GNISEALGIYPNLTFIDLSRNNFYGEI 372 (620)
Q Consensus 307 ~~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~l~----------~~~~~~~~~l~~L~~L~l~~n~l~~~~ 372 (620)
+..+..+++++|.+......+ +++-.+|+..+++.--.. .....++-.+|+|+.+++++|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 344555555555554333222 333345555555442111 112345667899999999999887665
Q ss_pred Ccc----ccCCCCCcEEECCCCccccCCCcc-------------ccCCCCCCEEecCCCeecccCC----hhhhccCCCc
Q 043685 373 SSN----WGKCPKLGTLNVSMNNITGGIPRE-------------IGNSSQLQALDLSLNQIVGDIP----KELGKSNSLT 431 (620)
Q Consensus 373 ~~~----~~~~~~L~~L~l~~n~l~~~~~~~-------------~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~ 431 (620)
+.. +..-..|+.|.+++|.+....... ..+-|.|+.+....|++..-.. ..+..=..|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 543 456688999999999875221111 1345778888888887752111 1122224778
Q ss_pred EEEccCCccccc-----CCccccCCCCCCEEEccCCcCCcc----hhhhhhCCCCCCEecCcCCcCcccchhH----h--
Q 043685 432 KLILRGNQLTGR-----LPTEIGSLIKLEYLDFSANRFNNS----VPEILGNLLKLHYLGLSNNQFVQELPKE----L-- 496 (620)
Q Consensus 432 ~L~l~~n~l~~~-----~~~~~~~~~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~----l-- 496 (620)
++.+..|.|... +-..+..+.+|+.|||..|-++-. +...+..++.|+.|.+.+|-+...-... |
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e 268 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE 268 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence 888888876522 111234567788888888877543 2334455666777888777665432221 2
Q ss_pred hhccCCCEEeCCCCcCcc
Q 043685 497 EKLVQLSLLDASHNLFGG 514 (620)
Q Consensus 497 ~~l~~L~~L~l~~n~l~~ 514 (620)
...|+|+.|...+|.+.+
T Consensus 269 ~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 269 KFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hcCCCccccccchhhhcC
Confidence 124677777777775543
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.96 E-value=1.4e-05 Score=69.92 Aligned_cols=106 Identities=22% Similarity=0.192 Sum_probs=64.4
Q ss_pred CCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCcccc-chhccCCCCCCEEEC
Q 043685 453 KLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEI-PFQICSLKSLEMLNL 531 (620)
Q Consensus 453 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l 531 (620)
....+|+++|.+... ..|.+++.|..|.+.+|+++.+.|.--.-+++|+.|.+.+|.|.... ...+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 445566666666432 34566667777777777776665554455566777777777665321 133556677777777
Q ss_pred CCCcCccccC---ccccCCCCCCEEEccCCcC
Q 043685 532 SHNNLSGSIP---NCFDGMHGLSVIDISDNQL 560 (620)
Q Consensus 532 ~~n~l~~~~~---~~~~~l~~L~~L~l~~N~l 560 (620)
-+|++....- -.+..+|+|+.||.++=..
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 7777653211 2356677888887776543
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.80 E-value=2.5e-05 Score=51.47 Aligned_cols=35 Identities=43% Similarity=0.581 Sum_probs=13.0
Q ss_pred CCEEeCCCCcCccccchhccCCCCCCEEECCCCcCc
Q 043685 502 LSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLS 537 (620)
Q Consensus 502 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 537 (620)
|++|++++|+|+. +|..++.+++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 3444444444442 2223344444444444444433
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=2.1e-05 Score=51.82 Aligned_cols=39 Identities=28% Similarity=0.549 Sum_probs=32.3
Q ss_pred CCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccC
Q 043685 524 KSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGP 563 (620)
Q Consensus 524 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 563 (620)
++|++|++++|+|+. +|..+..+++|+.|++++|+++..
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCC
Confidence 579999999999995 455689999999999999999853
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.73 E-value=4.1e-05 Score=67.09 Aligned_cols=103 Identities=15% Similarity=0.099 Sum_probs=78.6
Q ss_pred CCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccC-ccccCCCCCCEEE
Q 043685 476 LKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIP-NCFDGMHGLSVID 554 (620)
Q Consensus 476 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ 554 (620)
.....+++++|.+... ..|.+++.|..|.+++|+|+.+.|.--..+++|..|.+.+|.|..... +.+..+|+|++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4677899999998544 357889999999999999998888777778899999999999865432 4467889999999
Q ss_pred ccCCcCccCCCC----CcccCCCCccccCC
Q 043685 555 ISDNQLQGPVPN----STAFRNAPVEALEG 580 (620)
Q Consensus 555 l~~N~l~~~~~~----~~~~~~l~~~~l~~ 580 (620)
+-+|+.+..-.- ...+++++.+++++
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 999998743211 11366666666554
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.69 E-value=0.00012 Score=62.16 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=5.0
Q ss_pred ccCCCCCCEEEcc
Q 043685 448 IGSLIKLEYLDFS 460 (620)
Q Consensus 448 ~~~~~~L~~L~ls 460 (620)
|..+++|+.+++.
T Consensus 77 F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 77 FSNCTNLKNIDIP 89 (129)
T ss_dssp TTT-TTECEEEET
T ss_pred ccccccccccccC
Confidence 3334444444443
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.68 E-value=0.00016 Score=61.38 Aligned_cols=105 Identities=15% Similarity=0.265 Sum_probs=37.6
Q ss_pred ccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCC
Q 043685 328 LRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQ 407 (620)
Q Consensus 328 l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 407 (620)
|.++.+|+.+.+.. .+..+...+|..+++|+.+.+..+ +.......|.++++|+.+.+.+ .+.......|..+++++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 44444555555442 333344444555555555555442 3333344444554555555543 22222233444455555
Q ss_pred EEecCCCeecccCChhhhccCCCcEEEccC
Q 043685 408 ALDLSLNQIVGDIPKELGKSNSLTKLILRG 437 (620)
Q Consensus 408 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 437 (620)
.+++..+ +.......|..+ .++.+.+.+
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 5555433 222233334443 444444443
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.63 E-value=0.00024 Score=70.90 Aligned_cols=136 Identities=20% Similarity=0.203 Sum_probs=86.2
Q ss_pred ccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCC-cCCcchhhhhhCCCCC
Q 043685 400 IGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSAN-RFNNSVPEILGNLLKL 478 (620)
Q Consensus 400 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~l~~L 478 (620)
+..+.+++.|++++|.++ .+|. -.++|++|.+++|.-...+|..+ .++|++|++++| .+. .+| ++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------ccc
Confidence 445688999999999877 4552 34579999999875444666654 368999999998 443 333 357
Q ss_pred CEecCcCCcCc--ccchhHhhhccCCCEEeCCCCc-Ccc-ccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEE
Q 043685 479 HYLGLSNNQFV--QELPKELEKLVQLSLLDASHNL-FGG-EIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVID 554 (620)
Q Consensus 479 ~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 554 (620)
+.|++.++... +.+|. +|+.|.+.+++ ... ..+.. -.++|+.|++++|... ..|..+. .+|+.|+
T Consensus 115 e~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSIT 183 (426)
T ss_pred ceEEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEE
Confidence 77888766542 23333 45666665432 110 11111 1257888888888865 3444433 5788888
Q ss_pred ccCCc
Q 043685 555 ISDNQ 559 (620)
Q Consensus 555 l~~N~ 559 (620)
++.|.
T Consensus 184 ls~n~ 188 (426)
T PRK15386 184 LHIEQ 188 (426)
T ss_pred ecccc
Confidence 87763
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.60 E-value=2.9e-05 Score=84.06 Aligned_cols=129 Identities=21% Similarity=0.256 Sum_probs=73.1
Q ss_pred CCCCEEECCCCCCcc-----cCCCCCCCCcEEEccCCcCCC-cCcccccCCCCCCEEEccCCcCCcccCccCCCCCCCCE
Q 043685 82 SKLSYISLDSNQLFG-----KIPLELSSIEELFLYSNHLNE-SFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFLFE 155 (620)
Q Consensus 82 ~~L~~L~L~~~~i~~-----~~~~~l~~L~~L~ls~~~~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~ 155 (620)
.+|++|++++..... .+...+|+|+.|.+++-.+.. .......++|+|+.||+|+++++.. ..++.+++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 467777777654321 122245777777777765532 2334445777777777777777643 56677777777
Q ss_pred EeCCCCCCcC-CCCcccCCCCCCcEEEcccccccccC--C----CCCCcee-ecEEEccCCcccc
Q 043685 156 LDLSNNQLGG-SIPLSFGNLSNLARLCLYKNLLIGSI--P----SSLGNLK-LIDLKLSSNQLTG 212 (620)
Q Consensus 156 L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~--~----~~l~~l~-L~~L~l~~~~~~~ 212 (620)
|.+.+=.+.. ..-..+..|++|++||++........ . +.-..++ |+.|+.+++.+..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 7776644442 22234566777777777754433211 0 0111133 6677777666554
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.56 E-value=0.00026 Score=70.70 Aligned_cols=157 Identities=17% Similarity=0.217 Sum_probs=99.8
Q ss_pred ccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCC-cccccCCccccCCCCC
Q 043685 376 WGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGN-QLTGRLPTEIGSLIKL 454 (620)
Q Consensus 376 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L 454 (620)
+..+.+++.|++++|.++ .+| . -.++|++|.+++|.-....|..+ .++|++|.+++| .+. .+| ++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP-~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP-V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC-C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------ccc
Confidence 345689999999999887 445 2 24579999999876555666554 368999999999 444 444 458
Q ss_pred CEEEccCCcCCcchhhhhhCC-CCCCEecCcCCcCc--ccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEEC
Q 043685 455 EYLDFSANRFNNSVPEILGNL-LKLHYLGLSNNQFV--QELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNL 531 (620)
Q Consensus 455 ~~L~ls~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 531 (620)
+.|+++++.... +..+ ++|+.|.+.+++.. ..+|.. -.++|+.|++++|... ..|..+. .+|+.|++
T Consensus 115 e~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 115 RSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred ceEEeCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 888888766532 1222 35778877543321 111211 1268999999999866 3444443 68999999
Q ss_pred CCCcCcc--ccCccccCCCCCCEEEccCC
Q 043685 532 SHNNLSG--SIPNCFDGMHGLSVIDISDN 558 (620)
Q Consensus 532 ~~n~l~~--~~~~~~~~l~~L~~L~l~~N 558 (620)
+.+.... +....+. +++ .|++.++
T Consensus 185 s~n~~~sLeI~~~sLP--~nl-~L~f~n~ 210 (426)
T PRK15386 185 HIEQKTTWNISFEGFP--DGL-DIDLQNS 210 (426)
T ss_pred cccccccccCcccccc--ccc-Eechhhh
Confidence 8774221 1112222 344 6667665
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.47 E-value=6.7e-05 Score=81.37 Aligned_cols=134 Identities=25% Similarity=0.302 Sum_probs=72.3
Q ss_pred CCCCEEecCCCeec-ccCChhh-hccCCCcEEEccCCccc-ccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCE
Q 043685 404 SQLQALDLSLNQIV-GDIPKEL-GKSNSLTKLILRGNQLT-GRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHY 480 (620)
Q Consensus 404 ~~L~~L~l~~n~~~-~~~~~~~-~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~ 480 (620)
.+|++|++++.... ...+..+ ..+|+|+.|.+.+-.+. ........++|+|..||||+++++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 35555665553321 1111222 23566666666665543 11223345667777777777777544 45667777777
Q ss_pred ecCcCCcCcc-cchhHhhhccCCCEEeCCCCcCcccc------chhccCCCCCCEEECCCCcCccc
Q 043685 481 LGLSNNQFVQ-ELPKELEKLVQLSLLDASHNLFGGEI------PFQICSLKSLEMLNLSHNNLSGS 539 (620)
Q Consensus 481 L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~ 539 (620)
|.+.+=.+.. ..-..+..+++|+.||+|+.+..... -..-..+|.|+.||.++..+...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 7776655543 12234556777777777776543221 11122466666666666665433
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.42 E-value=3.2e-06 Score=81.87 Aligned_cols=258 Identities=18% Similarity=0.138 Sum_probs=133.1
Q ss_pred cCCCCccEEEecCccc-ccccc-ccccccCCCceeecCCC-ccccccCc-ccCCCCCCCEEECCCC-cccCcc-CccccC
Q 043685 305 CRGGALEIFIVDEYRF-QGTIP-TSLRNCTSLIRVRLDGN-NLTGNISE-ALGIYPNLTFIDLSRN-NFYGEI-SSNWGK 378 (620)
Q Consensus 305 ~~~~~L~~L~l~~~~~-~~~~~-~~l~~l~~L~~L~l~~~-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~ 378 (620)
..+++++.|.+.++.. +...- ..-..|+.|+.+++..| .++..... .-..+++|++|+++++ .+.+.. ...+.+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 3355556665555532 11111 11123667777777764 33322211 2235677777777776 344421 122345
Q ss_pred CCCCcEEECCCCccccC--CCccccCCCCCCEEecCCCeecccCC--hhhhccCCCcEEEccCCccccc--CCccccCCC
Q 043685 379 CPKLGTLNVSMNNITGG--IPREIGNSSQLQALDLSLNQIVGDIP--KELGKSNSLTKLILRGNQLTGR--LPTEIGSLI 452 (620)
Q Consensus 379 ~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~ 452 (620)
+..++.+...+|.-.+. +...-..+..+..+++..|....... ..-..+..|+.+..+++...+. +..-....+
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~ 320 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH 320 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence 66666666666532211 11111334455566655553321111 1113456677777777643211 111124567
Q ss_pred CCCEEEccCCc-CCcchhhhh-hCCCCCCEecCcCCcCccc--chhHhhhccCCCEEeCCCCcCc-ccc----chhccCC
Q 043685 453 KLEYLDFSANR-FNNSVPEIL-GNLLKLHYLGLSNNQFVQE--LPKELEKLVQLSLLDASHNLFG-GEI----PFQICSL 523 (620)
Q Consensus 453 ~L~~L~ls~n~-l~~~~~~~l-~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~-~~~----~~~~~~l 523 (620)
+|+.+.++.|+ +++.....+ .+++.|+.+++.++..... +...-.+++.|+++.+++|... +.. ...-.++
T Consensus 321 ~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~ 400 (483)
T KOG4341|consen 321 NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSL 400 (483)
T ss_pred ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccc
Confidence 77788777776 332222223 3467788888877755322 1112245677888888877533 221 1222456
Q ss_pred CCCCEEECCCCcCc-cccCccccCCCCCCEEEccCCcCcc
Q 043685 524 KSLEMLNLSHNNLS-GSIPNCFDGMHGLSVIDISDNQLQG 562 (620)
Q Consensus 524 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~ 562 (620)
..|+.+.+.+++.. ...-+.+..++.|+.+++-+++-..
T Consensus 401 ~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 401 EGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred cccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 77788888888743 2233455667788888887776543
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.25 E-value=6e-06 Score=80.05 Aligned_cols=208 Identities=18% Similarity=0.103 Sum_probs=121.8
Q ss_pred cccCCCceeecCCCc-cccccCc-ccCCCCCCCEEECCCCcccCc--cCccccCCCCCcEEECCCCcc-ccC-CCccccC
Q 043685 329 RNCTSLIRVRLDGNN-LTGNISE-ALGIYPNLTFIDLSRNNFYGE--ISSNWGKCPKLGTLNVSMNNI-TGG-IPREIGN 402 (620)
Q Consensus 329 ~~l~~L~~L~l~~~~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l-~~~-~~~~~~~ 402 (620)
..+++|+++++++|. +.+.... .+..+..++.+.+.+|.-.+. +...-.++..+.++++..|.. +.. ....-..
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence 346777888877773 3332222 233455566666665521111 011112445566666666632 211 1112345
Q ss_pred CCCCCEEecCCCeeccc-CC-hhhhccCCCcEEEccCCcccccC--CccccCCCCCCEEEccCCcCCcc--hhhhhhCCC
Q 043685 403 SSQLQALDLSLNQIVGD-IP-KELGKSNSLTKLILRGNQLTGRL--PTEIGSLIKLEYLDFSANRFNNS--VPEILGNLL 476 (620)
Q Consensus 403 l~~L~~L~l~~n~~~~~-~~-~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~ls~n~l~~~--~~~~l~~l~ 476 (620)
+..|++++.+++...+. .- .--.+.++|+.+.+++|+.-+.. ..--.+++.|+.+++..+..... +...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 67788888887654321 11 11245788999999888632111 11124678899999888765322 333345688
Q ss_pred CCCEecCcCCcCcccc-----hhHhhhccCCCEEeCCCCcCc-cccchhccCCCCCCEEECCCCcC
Q 043685 477 KLHYLGLSNNQFVQEL-----PKELEKLVQLSLLDASHNLFG-GEIPFQICSLKSLEMLNLSHNNL 536 (620)
Q Consensus 477 ~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l 536 (620)
.|+++.+++|...... ...-.++..|..+.++++... ......+..+++|+++++.+++-
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 8999999988654332 122345678999999999754 33445567788999999988874
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.11 E-value=0.00023 Score=65.34 Aligned_cols=110 Identities=24% Similarity=0.152 Sum_probs=71.7
Q ss_pred ChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCC--cCCcchhhhhhCCCCCCEecCcCCcCccc-chhHhh
Q 043685 421 PKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSAN--RFNNSVPEILGNLLKLHYLGLSNNQFVQE-LPKELE 497 (620)
Q Consensus 421 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n--~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~ 497 (620)
......+..|+.+.+.+..+++. ..+..+++|+.|.++.| ++...+......+|+|+++++++|++... .-..+.
T Consensus 36 ~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 36 GGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred ccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence 33344556777788888877733 34677888889999888 55544444455668888888888887531 113456
Q ss_pred hccCCCEEeCCCCcCccccc---hhccCCCCCCEEECC
Q 043685 498 KLVQLSLLDASHNLFGGEIP---FQICSLKSLEMLNLS 532 (620)
Q Consensus 498 ~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~ 532 (620)
.+++|..|++.+|..+.... ..|.-+++|+.||-.
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 77778888888887664322 234456666666543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=3.2e-05 Score=71.02 Aligned_cols=80 Identities=21% Similarity=0.157 Sum_probs=36.0
Q ss_pred CCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccc-hhccCCCCCCEEECC
Q 043685 454 LEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIP-FQICSLKSLEMLNLS 532 (620)
Q Consensus 454 L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~ 532 (620)
.+.|+..+|.+.++ .....++.|+.|.|+-|.++.. ..+..|+.|++|+|..|.|.+... ..+.++++|+.|.|.
T Consensus 21 vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred hhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 34444444444322 2233445555555555555333 224455555555555555443211 223445555555555
Q ss_pred CCcCc
Q 043685 533 HNNLS 537 (620)
Q Consensus 533 ~n~l~ 537 (620)
.|+-.
T Consensus 97 ENPCc 101 (388)
T KOG2123|consen 97 ENPCC 101 (388)
T ss_pred cCCcc
Confidence 55443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.07 E-value=0.00032 Score=64.40 Aligned_cols=113 Identities=22% Similarity=0.184 Sum_probs=79.3
Q ss_pred CCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCC--cccccCCccccCCCCCCEEEccCCcCCcc-hhhhh
Q 043685 396 IPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGN--QLTGRLPTEIGSLIKLEYLDFSANRFNNS-VPEIL 472 (620)
Q Consensus 396 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~l 472 (620)
+.........|+.+.+.+..++.. ..+..+++|++|.++.| ++.+.++.....+|+|+++++++|++... -...+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 333445566778888888777633 35677889999999999 66655555566779999999999998641 11234
Q ss_pred hCCCCCCEecCcCCcCcccc---hhHhhhccCCCEEeCCCC
Q 043685 473 GNLLKLHYLGLSNNQFVQEL---PKELEKLVQLSLLDASHN 510 (620)
Q Consensus 473 ~~l~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~l~~n 510 (620)
..+.+|..|++.+|..+..- -..|.-+++|+.|+-...
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 56778889999998775522 134667788887765443
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.53 E-value=0.00024 Score=75.64 Aligned_cols=16 Identities=38% Similarity=0.223 Sum_probs=8.4
Q ss_pred hhCCCCCCEecCcCCc
Q 043685 472 LGNLLKLHYLGLSNNQ 487 (620)
Q Consensus 472 l~~l~~L~~L~l~~n~ 487 (620)
...+++++.+.+..+.
T Consensus 358 ~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCG 373 (482)
T ss_pred HhcCCCcchhhhhhhh
Confidence 3445555555555554
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.00042 Score=63.91 Aligned_cols=100 Identities=24% Similarity=0.145 Sum_probs=55.4
Q ss_pred CCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcch-hhhhhCCCCCCEe
Q 043685 403 SSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSV-PEILGNLLKLHYL 481 (620)
Q Consensus 403 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~-~~~l~~l~~L~~L 481 (620)
+.+.+.|+..+|.+.++ .....++.|+.|.|+-|+|++. ..+..|+.|++|+|..|.|.+.. ...+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 44556666666666532 2234566666666666666633 23456666666666666665421 2334566666666
Q ss_pred cCcCCcCcccch-----hHhhhccCCCEEe
Q 043685 482 GLSNNQFVQELP-----KELEKLVQLSLLD 506 (620)
Q Consensus 482 ~l~~n~l~~~~~-----~~l~~l~~L~~L~ 506 (620)
.|..|.-.+..+ ..+.-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 666665543322 2345556666554
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.04 E-value=0.0011 Score=70.75 Aligned_cols=173 Identities=21% Similarity=0.126 Sum_probs=73.9
Q ss_pred cCCCceeecCCCccccc--cCcccCCCCCCCEEECCCC-cccCcc----CccccCCCCCcEEECCCCc-cccCCCcccc-
Q 043685 331 CTSLIRVRLDGNNLTGN--ISEALGIYPNLTFIDLSRN-NFYGEI----SSNWGKCPKLGTLNVSMNN-ITGGIPREIG- 401 (620)
Q Consensus 331 l~~L~~L~l~~~~l~~~--~~~~~~~l~~L~~L~l~~n-~l~~~~----~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~- 401 (620)
++.|+.+.+.++.-... ........+.|++|+++++ ...... ......+++|+.++++.+. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666666532211 1233345666777776652 111111 1122334556666666655 3322111111
Q ss_pred CCCCCCEEecCCCe-ecccC-ChhhhccCCCcEEEccCCccccc--CCccccCCCCCCEEEccCCcCCcchhhhhhCCCC
Q 043685 402 NSSQLQALDLSLNQ-IVGDI-PKELGKSNSLTKLILRGNQLTGR--LPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLK 477 (620)
Q Consensus 402 ~l~~L~~L~l~~n~-~~~~~-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~ 477 (620)
.+++|++|.+.+|. +++.. ......++.|++|++++|...+. +......+++++.|.+....- ++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~~ 336 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CPS 336 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Ccc
Confidence 25556666555554 33211 11123355566666655543210 111122344444433222110 223
Q ss_pred CCEecCcCCcCc---ccchhHhhhccCCCEEeCCCCcCc
Q 043685 478 LHYLGLSNNQFV---QELPKELEKLVQLSLLDASHNLFG 513 (620)
Q Consensus 478 L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~l~~n~l~ 513 (620)
++.+.+.++... ......+..++.++.+.+.++...
T Consensus 337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~ 375 (482)
T KOG1947|consen 337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGIS 375 (482)
T ss_pred HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhcc
Confidence 333333332221 112233566777777777777643
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.36 E-value=0.00031 Score=72.93 Aligned_cols=181 Identities=28% Similarity=0.296 Sum_probs=95.9
Q ss_pred CCCEEECCCCcccCcc----CccccCCCCCcEEECCCCccccCCC----ccccCC-CCCCEEecCCCeeccc----CChh
Q 043685 357 NLTFIDLSRNNFYGEI----SSNWGKCPKLGTLNVSMNNITGGIP----REIGNS-SQLQALDLSLNQIVGD----IPKE 423 (620)
Q Consensus 357 ~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l-~~L~~L~l~~n~~~~~----~~~~ 423 (620)
.+..+.+.+|.+.... ...+...+.|+.|++++|.+..... ..+... ..+++|.+..|.++.. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 3677777777766432 2344556778888888887762211 122222 4456666666666532 2333
Q ss_pred hhccCCCcEEEccCCcccc----cCCcccc----CCCCCCEEEccCCcCCcc----hhhhhhCCCC-CCEecCcCCcCcc
Q 043685 424 LGKSNSLTKLILRGNQLTG----RLPTEIG----SLIKLEYLDFSANRFNNS----VPEILGNLLK-LHYLGLSNNQFVQ 490 (620)
Q Consensus 424 ~~~l~~L~~L~l~~n~l~~----~~~~~~~----~~~~L~~L~ls~n~l~~~----~~~~l~~l~~-L~~L~l~~n~l~~ 490 (620)
+.....++.++++.|.+.. .++..+. ...++++|.+++|.++.. ...++...+. +..+++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 4446667777777776531 1112222 345666677766665532 2223344444 5556666666543
Q ss_pred c----chhHhhhc-cCCCEEeCCCCcCccccc----hhccCCCCCCEEECCCCcCc
Q 043685 491 E----LPKELEKL-VQLSLLDASHNLFGGEIP----FQICSLKSLEMLNLSHNNLS 537 (620)
Q Consensus 491 ~----~~~~l~~l-~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~ 537 (620)
. ....+..+ ..+++++++.|.|+.... ..+..+++++.+.+++|.+.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 2 12223333 455666666666654322 22334556666666666654
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.99 E-value=0.00049 Score=71.46 Aligned_cols=181 Identities=25% Similarity=0.300 Sum_probs=100.8
Q ss_pred ccEEEecCccccccc----cccccccCCCceeecCCCccccccC----cccCCC-CCCCEEECCCCcccCcc----Cccc
Q 043685 310 LEIFIVDEYRFQGTI----PTSLRNCTSLIRVRLDGNNLTGNIS----EALGIY-PNLTFIDLSRNNFYGEI----SSNW 376 (620)
Q Consensus 310 L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~l~~~~~----~~~~~l-~~L~~L~l~~n~l~~~~----~~~~ 376 (620)
+..+.+.+|.+.... -..+...+.|..|++++|.+..... ..+... ..+++|.+..|.++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 666777777665432 2334556777778888777763211 122222 45666777666665442 2344
Q ss_pred cCCCCCcEEECCCCcccc----CCCccc----cCCCCCCEEecCCCeeccc----CChhhhccCC-CcEEEccCCccccc
Q 043685 377 GKCPKLGTLNVSMNNITG----GIPREI----GNSSQLQALDLSLNQIVGD----IPKELGKSNS-LTKLILRGNQLTGR 443 (620)
Q Consensus 377 ~~~~~L~~L~l~~n~l~~----~~~~~~----~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~-L~~L~l~~n~l~~~ 443 (620)
.....++.++++.|.+.. ..+..+ ....++++|++.+|.++.. ....+...+. +.++++..|.+...
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 456677777777776631 111222 2355677777777766521 1122333444 55677777766522
Q ss_pred ----CCccccCC-CCCCEEEccCCcCCcc----hhhhhhCCCCCCEecCcCCcCcc
Q 043685 444 ----LPTEIGSL-IKLEYLDFSANRFNNS----VPEILGNLLKLHYLGLSNNQFVQ 490 (620)
Q Consensus 444 ----~~~~~~~~-~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~ 490 (620)
....+..+ +.++.++++.|++++. ....+..++.++.+.+..|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 12223333 5567777777777653 34445566677777777777654
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.89 E-value=0.024 Score=30.80 Aligned_cols=12 Identities=67% Similarity=0.874 Sum_probs=5.0
Q ss_pred CCEEECCCCcCc
Q 043685 526 LEMLNLSHNNLS 537 (620)
Q Consensus 526 L~~L~l~~n~l~ 537 (620)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444444
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.62 E-value=0.031 Score=30.36 Aligned_cols=12 Identities=25% Similarity=0.407 Sum_probs=5.4
Q ss_pred CCEEEccCCcCC
Q 043685 129 IVRLYINNNSLS 140 (620)
Q Consensus 129 L~~L~Ls~n~~~ 140 (620)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.68 E-value=0.039 Score=48.95 Aligned_cols=81 Identities=25% Similarity=0.195 Sum_probs=49.0
Q ss_pred CCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccc-hhHh-hhccCCCEEeCCCC-cCccccchhccCCCCCCEE
Q 043685 453 KLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQEL-PKEL-EKLVQLSLLDASHN-LFGGEIPFQICSLKSLEML 529 (620)
Q Consensus 453 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l-~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 529 (620)
.++.+|-+++.+....-+.+..++.++.|.+.+|.-.+.- -+.+ +-.++|+.|++++| +|++.-...+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4667777777777666677777777777777777543321 0111 13366777777766 4554444555566666666
Q ss_pred ECCC
Q 043685 530 NLSH 533 (620)
Q Consensus 530 ~l~~ 533 (620)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6543
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.62 E-value=0.032 Score=49.54 Aligned_cols=78 Identities=19% Similarity=0.206 Sum_probs=44.2
Q ss_pred CCEEECCCCCCCCcCCccccCCCCCCEEECCCCCCccc-----CCCCCCCCcEEEccCC-cCCCcCcccccCCCCCCEEE
Q 043685 60 LEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGK-----IPLELSSIEELFLYSN-HLNESFPPFLGNLSNIVRLY 133 (620)
Q Consensus 60 L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L~~~~i~~~-----~~~~l~~L~~L~ls~~-~~~~~~~~~l~~l~~L~~L~ 133 (620)
++.+|-++..|..+--+.+.+++.++.|.+.+|.-.+. +....++|++|++++| +|++..-..+.++++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 45566666666555555666666777777766643211 1113356666666655 35555555666666666666
Q ss_pred ccCC
Q 043685 134 INNN 137 (620)
Q Consensus 134 Ls~n 137 (620)
+.+-
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 6543
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.38 E-value=0.19 Score=25.25 Aligned_cols=13 Identities=38% Similarity=0.723 Sum_probs=5.2
Q ss_pred CCCEEEccCCcCc
Q 043685 549 GLSVIDISDNQLQ 561 (620)
Q Consensus 549 ~L~~L~l~~N~l~ 561 (620)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555544
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.46 E-value=0.3 Score=27.68 Aligned_cols=16 Identities=44% Similarity=0.528 Sum_probs=7.6
Q ss_pred CCCCEEECCCCcCccc
Q 043685 524 KSLEMLNLSHNNLSGS 539 (620)
Q Consensus 524 ~~L~~L~l~~n~l~~~ 539 (620)
++|+.|+|++|+|..+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3445555555555433
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.46 E-value=0.3 Score=27.68 Aligned_cols=16 Identities=44% Similarity=0.528 Sum_probs=7.6
Q ss_pred CCCCEEECCCCcCccc
Q 043685 524 KSLEMLNLSHNNLSGS 539 (620)
Q Consensus 524 ~~L~~L~l~~n~l~~~ 539 (620)
++|+.|+|++|+|..+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3445555555555433
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.74 E-value=0.49 Score=26.78 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=14.0
Q ss_pred ccCCCEEeCCCCcCccccchhc
Q 043685 499 LVQLSLLDASHNLFGGEIPFQI 520 (620)
Q Consensus 499 l~~L~~L~l~~n~l~~~~~~~~ 520 (620)
+++|+.|+|++|+|+...+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3567777777777775544444
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.74 E-value=0.49 Score=26.78 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=14.0
Q ss_pred ccCCCEEeCCCCcCccccchhc
Q 043685 499 LVQLSLLDASHNLFGGEIPFQI 520 (620)
Q Consensus 499 l~~L~~L~l~~n~l~~~~~~~~ 520 (620)
+++|+.|+|++|+|+...+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3567777777777775544444
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.64 E-value=0.0096 Score=53.75 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=41.0
Q ss_pred ccccCCCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCCCCCcCCCCcccCCCCCCcEEEcccccc
Q 043685 121 PFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLYKNLL 187 (620)
Q Consensus 121 ~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~ 187 (620)
..|+.++.|..|+++.|.+. .+|+.+.....++++++..|... ..|..+++.++++++++..+.+
T Consensus 59 ~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 59 KNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred cchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence 34555666666666666665 56666666666666666665555 5566666667776666665554
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.71 E-value=0.029 Score=50.73 Aligned_cols=83 Identities=22% Similarity=0.203 Sum_probs=41.2
Q ss_pred CCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEE
Q 043685 475 LLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVID 554 (620)
Q Consensus 475 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 554 (620)
....+.||++.|++.. +..-|+-++.|..|+++.|.+. ..|..+.+...+..+++..|..+ ..|.++...+.+++++
T Consensus 41 ~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 3344555555554422 1223444455555555555554 44444555555555555555544 3455555555555555
Q ss_pred ccCCcC
Q 043685 555 ISDNQL 560 (620)
Q Consensus 555 l~~N~l 560 (620)
+.+|++
T Consensus 118 ~k~~~~ 123 (326)
T KOG0473|consen 118 QKKTEF 123 (326)
T ss_pred hccCcc
Confidence 555553
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.47 E-value=0.51 Score=26.10 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=6.0
Q ss_pred CCCCEEEccCCcCCc
Q 043685 452 IKLEYLDFSANRFNN 466 (620)
Q Consensus 452 ~~L~~L~ls~n~l~~ 466 (620)
++|++|+|++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344455555554443
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=77.19 E-value=1.1 Score=55.53 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=34.0
Q ss_pred ECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCC
Q 043685 530 NLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNS 567 (620)
Q Consensus 530 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 567 (620)
||++|+|+.+.+..|..+++|+.|+|++|++.+.....
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~ 38 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLA 38 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccH
Confidence 68999999888889999999999999999999877754
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=76.61 E-value=12 Score=38.37 Aligned_cols=107 Identities=23% Similarity=0.247 Sum_probs=52.0
Q ss_pred CCCCCEEECCCCCCcccCCCCCC-CCcEEEccCCcCCCcCcccc---cCCCCCCEEEccCCcCCcccCccCCCC---CCC
Q 043685 81 LSKLSYISLDSNQLFGKIPLELS-SIEELFLYSNHLNESFPPFL---GNLSNIVRLYINNNSLSSSIPTNIGNL---KFL 153 (620)
Q Consensus 81 l~~L~~L~L~~~~i~~~~~~~l~-~L~~L~ls~~~~~~~~~~~l---~~l~~L~~L~Ls~n~~~~~~~~~~~~l---~~L 153 (620)
-+.+++++++.|.+.+..|..++ ..--+.++-+..++..-..+ +.-..+.+++++.|...+..|..+..+ .-+
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl 243 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVL 243 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhh
Confidence 34567777777777766665441 11224444444333111100 112246667777776655555443322 235
Q ss_pred CEEeCCCCCCcC---CCCcccCCCCCCcEEEcccccc
Q 043685 154 FELDLSNNQLGG---SIPLSFGNLSNLARLCLYKNLL 187 (620)
Q Consensus 154 ~~L~l~~~~l~~---~~~~~l~~l~~L~~L~l~~n~~ 187 (620)
++++.+...++- ..+...+.-++|.+.+++.|..
T Consensus 244 ~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 244 FKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hcccccccccchhhcccccccccccccchhhhccCCC
Confidence 666666555441 1222234445666666665543
No 87
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=75.82 E-value=1.5 Score=28.45 Aligned_cols=13 Identities=38% Similarity=1.449 Sum_probs=9.6
Q ss_pred CCCCccccceeeC
Q 043685 18 KISPCAWYGISCN 30 (620)
Q Consensus 18 ~~~~c~~~~~~~~ 30 (620)
..++|+|.||.|+
T Consensus 31 ~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 31 DSDPCSWSGVTCD 43 (43)
T ss_dssp -S-CCCSTTEEE-
T ss_pred CCCCeeeccEEeC
Confidence 3799999999995
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=71.86 E-value=3.6 Score=23.36 Aligned_cols=13 Identities=46% Similarity=0.708 Sum_probs=6.2
Q ss_pred CCCEEECCCCcCc
Q 043685 525 SLEMLNLSHNNLS 537 (620)
Q Consensus 525 ~L~~L~l~~n~l~ 537 (620)
+|+.|+++.|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4444555555443
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=64.11 E-value=5.9 Score=22.87 Aligned_cols=14 Identities=36% Similarity=0.577 Sum_probs=10.5
Q ss_pred CCCCEEEccCCcCc
Q 043685 548 HGLSVIDISDNQLQ 561 (620)
Q Consensus 548 ~~L~~L~l~~N~l~ 561 (620)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46778888888775
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=59.98 E-value=6.7 Score=22.24 Aligned_cols=12 Identities=50% Similarity=0.728 Sum_probs=5.4
Q ss_pred CCEEECCCCcCc
Q 043685 526 LEMLNLSHNNLS 537 (620)
Q Consensus 526 L~~L~l~~n~l~ 537 (620)
|+.|++++|+++
T Consensus 4 L~~L~vs~N~Lt 15 (26)
T smart00364 4 LKELNVSNNQLT 15 (26)
T ss_pred cceeecCCCccc
Confidence 444444444443
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=52.24 E-value=58 Score=33.60 Aligned_cols=17 Identities=24% Similarity=0.175 Sum_probs=7.7
Q ss_pred CCCEEECCCCcccCccC
Q 043685 357 NLTFIDLSRNNFYGEIS 373 (620)
Q Consensus 357 ~L~~L~l~~n~l~~~~~ 373 (620)
.+++++++.|.+.+..+
T Consensus 166 r~r~~dls~npi~dkvp 182 (553)
T KOG4242|consen 166 RARQHDLSPNPIGDKVP 182 (553)
T ss_pred hhhhhccCCCcccccCC
Confidence 34445555554444333
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=48.63 E-value=12 Score=46.89 Aligned_cols=32 Identities=25% Similarity=0.167 Sum_probs=29.4
Q ss_pred eCCCCcCccccchhccCCCCCCEEECCCCcCc
Q 043685 506 DASHNLFGGEIPFQICSLKSLEMLNLSHNNLS 537 (620)
Q Consensus 506 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 537 (620)
||++|+|+.+.+..|..+++|+.|+|++|++.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999888889999999999999999985
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=47.64 E-value=13 Score=38.85 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=6.8
Q ss_pred CCCCCEEEccCCcC
Q 043685 451 LIKLEYLDFSANRF 464 (620)
Q Consensus 451 ~~~L~~L~ls~n~l 464 (620)
.+.+..+.+++|++
T Consensus 217 ~p~i~sl~lsnNrL 230 (585)
T KOG3763|consen 217 FPEILSLSLSNNRL 230 (585)
T ss_pred Ccceeeeecccchh
Confidence 34444555555544
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.89 E-value=11 Score=39.30 Aligned_cols=66 Identities=29% Similarity=0.194 Sum_probs=39.4
Q ss_pred hCCCCCCEecCcCCcCccc--chhHhhhccCCCEEeCCCCcCccccchhcc--CCCCCCEEECCCCcCcc
Q 043685 473 GNLLKLHYLGLSNNQFVQE--LPKELEKLVQLSLLDASHNLFGGEIPFQIC--SLKSLEMLNLSHNNLSG 538 (620)
Q Consensus 473 ~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~ 538 (620)
.+.+.+..+++++|++... +...-+..|.|+.|+|++|...-.....+. +...|++|-+.||++..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 3566788888888887432 112234557888888888822211112222 23456788888888753
No 95
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=39.53 E-value=20 Score=20.08 Aligned_cols=11 Identities=18% Similarity=0.271 Sum_probs=5.1
Q ss_pred CCCCEEEccCC
Q 043685 127 SNIVRLYINNN 137 (620)
Q Consensus 127 ~~L~~L~Ls~n 137 (620)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 96
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=21.10 E-value=44 Score=22.21 Aligned_cols=9 Identities=22% Similarity=0.239 Sum_probs=7.3
Q ss_pred CCCCCCCCC
Q 043685 581 NKGLCGGVK 589 (620)
Q Consensus 581 Np~~C~~~~ 589 (620)
|||.|+|..
T Consensus 1 NP~~CdC~l 9 (51)
T smart00082 1 NPFICDCEL 9 (51)
T ss_pred CCccCcCCc
Confidence 899999843
Done!