Query 043685
Match_columns 620
No_of_seqs 414 out of 3987
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 12:27:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043685.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043685hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.3E-71 7.9E-76 619.6 45.4 575 17-597 35-751 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.4E-60 4.9E-65 532.5 37.5 524 33-561 100-740 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.7E-58 5.7E-63 511.6 47.4 540 33-588 25-626 (680)
4 3t6q_A CD180 antigen; protein- 100.0 7.1E-56 2.4E-60 484.0 40.3 518 34-588 34-564 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 4.2E-54 1.4E-58 476.3 48.4 544 37-584 8-597 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 5.3E-55 1.8E-59 477.1 36.4 524 37-588 15-562 (606)
7 3t6q_A CD180 antigen; protein- 100.0 4.2E-54 1.4E-58 470.0 43.0 492 33-566 57-565 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 5.3E-53 1.8E-57 461.3 40.3 517 33-567 32-564 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 2.9E-52 1E-56 470.2 35.2 515 23-588 15-564 (844)
10 2z63_A TOLL-like receptor 4, v 100.0 6.3E-50 2.1E-54 434.1 31.7 491 34-569 29-539 (570)
11 4eco_A Uncharacterized protein 100.0 1.9E-50 6.6E-55 440.5 22.9 463 17-565 62-604 (636)
12 2z63_A TOLL-like receptor 4, v 100.0 1.3E-47 4.3E-52 416.0 36.8 503 60-589 9-536 (570)
13 3j0a_A TOLL-like receptor 5; m 100.0 9.1E-48 3.1E-52 433.6 36.2 500 36-585 7-540 (844)
14 2z81_A CD282 antigen, TOLL-lik 100.0 6.9E-47 2.4E-51 408.0 31.9 481 21-565 3-514 (549)
15 2z81_A CD282 antigen, TOLL-lik 100.0 1.8E-46 6E-51 404.9 27.3 459 103-588 26-514 (549)
16 4ecn_A Leucine-rich repeat pro 100.0 5.5E-46 1.9E-50 411.3 28.4 456 25-585 315-865 (876)
17 4g8a_A TOLL-like receptor 4; l 100.0 3.9E-44 1.3E-48 393.9 39.5 507 59-588 53-584 (635)
18 2z7x_B TOLL-like receptor 1, v 100.0 4E-45 1.4E-49 391.3 26.4 464 36-565 3-485 (520)
19 4g8a_A TOLL-like receptor 4; l 100.0 1.1E-43 3.7E-48 390.4 37.4 515 34-566 53-585 (635)
20 4ecn_A Leucine-rich repeat pro 100.0 4.9E-44 1.7E-48 395.8 25.0 439 58-585 323-841 (876)
21 4eco_A Uncharacterized protein 100.0 5.9E-45 2E-49 397.2 16.5 372 207-587 192-603 (636)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.7E-42 9.3E-47 372.3 25.1 461 35-565 33-514 (562)
23 2z7x_B TOLL-like receptor 1, v 100.0 2.9E-42 9.8E-47 369.2 22.4 444 33-539 21-483 (520)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1E-39 3.5E-44 352.2 22.7 445 33-540 52-513 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 3.1E-38 1E-42 332.2 31.3 396 85-568 13-415 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 1.8E-37 6.1E-42 326.4 30.6 352 200-588 32-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 2.7E-36 9.3E-41 314.5 27.1 403 104-586 12-431 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 2.9E-36 1E-40 314.2 26.2 407 33-566 11-434 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 7.1E-36 2.4E-40 315.9 26.6 327 262-588 33-360 (477)
30 2id5_A Lingo-1, leucine rich r 100.0 1.8E-35 6.1E-40 312.8 27.5 323 264-588 14-337 (477)
31 1o6v_A Internalin A; bacterial 100.0 1.4E-34 5E-39 304.4 32.1 216 330-563 175-390 (466)
32 1o6v_A Internalin A; bacterial 100.0 6E-34 2.1E-38 299.7 33.3 193 330-538 197-389 (466)
33 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-33 4.7E-38 294.3 27.6 166 53-234 37-203 (457)
34 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-33 4.9E-38 294.2 25.2 352 103-567 42-393 (457)
35 1ogq_A PGIP-2, polygalacturona 100.0 7.6E-34 2.6E-38 282.1 17.9 259 332-594 50-312 (313)
36 3o6n_A APL1; leucine-rich repe 100.0 1.1E-32 3.8E-37 283.4 26.4 314 256-588 64-378 (390)
37 3o6n_A APL1; leucine-rich repe 100.0 8.9E-33 3E-37 284.1 22.5 313 259-588 43-356 (390)
38 3oja_B Anopheles plasmodium-re 100.0 9.3E-32 3.2E-36 291.5 26.7 314 257-589 71-385 (597)
39 4fmz_A Internalin; leucine ric 100.0 5.2E-31 1.8E-35 266.6 30.5 306 218-561 40-346 (347)
40 3oja_B Anopheles plasmodium-re 100.0 6.6E-32 2.3E-36 292.7 22.5 312 259-587 49-361 (597)
41 4fmz_A Internalin; leucine ric 100.0 6.3E-31 2.2E-35 265.9 28.2 307 256-583 39-345 (347)
42 1ogq_A PGIP-2, polygalacturona 100.0 1.8E-32 6.2E-37 272.1 15.0 265 17-343 29-302 (313)
43 2ft3_A Biglycan; proteoglycan, 100.0 4.2E-30 1.4E-34 257.9 26.2 287 262-558 34-330 (332)
44 1xku_A Decorin; proteoglycan, 100.0 6.3E-30 2.2E-34 256.5 27.3 228 327-561 71-306 (330)
45 1xku_A Decorin; proteoglycan, 100.0 5.3E-29 1.8E-33 249.7 28.4 289 262-559 32-330 (330)
46 2ft3_A Biglycan; proteoglycan, 100.0 4.2E-29 1.4E-33 250.7 25.9 287 284-581 33-330 (332)
47 1z7x_W Ribonuclease inhibitor; 100.0 8.1E-33 2.8E-37 291.4 -3.9 382 103-561 3-440 (461)
48 1z7x_W Ribonuclease inhibitor; 100.0 4.9E-32 1.7E-36 285.4 -3.1 375 200-585 5-441 (461)
49 2z66_A Variable lymphocyte rec 100.0 7E-29 2.4E-33 246.1 17.7 274 312-589 11-292 (306)
50 3zyj_A Leucine-rich repeat-con 100.0 5.6E-28 1.9E-32 252.2 23.4 251 310-565 45-296 (440)
51 3zyi_A Leucine-rich repeat-con 100.0 7.3E-28 2.5E-32 252.2 24.1 251 310-565 56-307 (452)
52 2z80_A TOLL-like receptor 2, v 100.0 1.2E-28 4E-33 249.7 16.0 275 288-565 35-318 (353)
53 2z66_A Variable lymphocyte rec 100.0 7.2E-28 2.5E-32 238.8 19.7 250 335-588 10-265 (306)
54 2z80_A TOLL-like receptor 2, v 100.0 7.2E-28 2.5E-32 243.8 18.0 279 307-588 30-318 (353)
55 1ozn_A Reticulon 4 receptor; N 100.0 5.7E-28 1.9E-32 236.9 16.5 251 335-588 14-265 (285)
56 3zyi_A Leucine-rich repeat-con 100.0 8.3E-27 2.9E-31 244.2 26.1 247 286-537 56-303 (452)
57 3zyj_A Leucine-rich repeat-con 100.0 1E-26 3.4E-31 242.7 25.3 228 308-537 64-292 (440)
58 3ogk_B Coronatine-insensitive 99.9 1.2E-29 4.1E-34 276.0 -2.5 234 303-538 265-527 (592)
59 1ozn_A Reticulon 4 receptor; N 99.9 1E-26 3.4E-31 228.0 18.5 253 311-567 14-267 (285)
60 4fcg_A Uncharacterized protein 99.9 1.9E-26 6.7E-31 230.0 17.1 225 332-561 81-314 (328)
61 4fcg_A Uncharacterized protein 99.9 5.3E-26 1.8E-30 226.9 18.4 225 308-537 81-314 (328)
62 3ogk_B Coronatine-insensitive 99.9 1.5E-28 5.1E-33 267.4 -2.1 412 118-563 64-528 (592)
63 1wwl_A Monocyte differentiatio 99.9 2.1E-27 7.2E-32 235.7 5.3 245 331-584 42-309 (312)
64 3o53_A Protein LRIM1, AGAP0063 99.9 3.5E-26 1.2E-30 227.4 12.8 257 309-579 11-270 (317)
65 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-26 3.9E-31 231.0 8.9 266 286-565 12-280 (317)
66 1wwl_A Monocyte differentiatio 99.9 1.4E-26 5E-31 229.7 8.9 250 304-563 39-311 (312)
67 2p1m_B Transport inhibitor res 99.9 1.4E-28 4.9E-33 267.7 -6.8 235 324-560 281-543 (594)
68 3oja_A Leucine-rich immune mol 99.9 3E-26 1E-30 241.2 10.9 246 330-589 32-287 (487)
69 2o6q_A Variable lymphocyte rec 99.9 2.7E-24 9.1E-29 208.7 22.4 213 19-235 2-218 (270)
70 2z62_A TOLL-like receptor 4, v 99.9 3.4E-24 1.2E-28 208.9 22.7 212 356-568 28-244 (276)
71 3oja_A Leucine-rich immune mol 99.9 2.2E-25 7.6E-30 234.5 15.0 224 352-588 30-254 (487)
72 2z62_A TOLL-like receptor 4, v 99.9 1.6E-24 5.5E-29 211.2 19.9 224 361-588 12-241 (276)
73 1p9a_G Platelet glycoprotein I 99.9 1.7E-24 5.6E-29 211.9 19.6 206 352-564 6-211 (290)
74 2o6q_A Variable lymphocyte rec 99.9 3.7E-24 1.3E-28 207.7 21.7 206 357-565 17-222 (270)
75 2p1m_B Transport inhibitor res 99.9 2.1E-27 7.2E-32 258.4 -6.6 235 324-561 257-519 (594)
76 3g06_A SSPH2 (leucine-rich rep 99.9 6.7E-23 2.3E-27 219.8 28.4 260 263-565 42-301 (622)
77 3g06_A SSPH2 (leucine-rich rep 99.9 2.1E-22 7.1E-27 216.0 27.3 266 200-547 42-307 (622)
78 1p9a_G Platelet glycoprotein I 99.9 9.4E-23 3.2E-27 199.4 20.7 203 328-537 6-208 (290)
79 3rfs_A Internalin B, repeat mo 99.9 2.3E-23 8E-28 202.2 12.3 224 331-567 18-241 (272)
80 3goz_A Leucine-rich repeat-con 99.9 9.4E-24 3.2E-28 214.1 6.6 251 313-563 3-299 (362)
81 3rfs_A Internalin B, repeat mo 99.9 1.7E-22 5.9E-27 196.1 15.1 210 328-548 37-246 (272)
82 2ca6_A RAN GTPase-activating p 99.9 1.3E-23 4.3E-28 215.4 6.6 243 323-565 23-320 (386)
83 2ast_B S-phase kinase-associat 99.9 7.5E-23 2.6E-27 205.7 9.6 202 332-534 70-282 (336)
84 2xwt_C Thyrotropin receptor; s 99.9 5.2E-22 1.8E-26 188.9 14.0 196 357-558 32-236 (239)
85 3m19_A Variable lymphocyte rec 99.9 3E-21 1E-25 184.9 18.9 181 382-565 16-196 (251)
86 4glp_A Monocyte differentiatio 99.9 8.3E-22 2.9E-26 195.2 15.1 201 379-584 90-307 (310)
87 3m19_A Variable lymphocyte rec 99.9 2.6E-21 9E-26 185.4 17.8 180 404-586 14-194 (251)
88 2xwt_C Thyrotropin receptor; s 99.9 8.2E-22 2.8E-26 187.5 13.0 199 379-582 30-237 (239)
89 1h6u_A Internalin H; cell adhe 99.9 5.3E-21 1.8E-25 188.9 18.9 193 354-562 39-231 (308)
90 4glp_A Monocyte differentiatio 99.9 1E-21 3.4E-26 194.7 13.7 203 355-562 90-308 (310)
91 3goz_A Leucine-rich repeat-con 99.9 1.8E-22 6.1E-27 204.7 8.2 251 336-586 2-299 (362)
92 2ca6_A RAN GTPase-activating p 99.9 1.4E-22 4.9E-27 207.5 5.5 258 300-557 24-339 (386)
93 2ast_B S-phase kinase-associat 99.9 1.6E-21 5.5E-26 195.9 12.1 245 333-584 48-306 (336)
94 1h6u_A Internalin H; cell adhe 99.8 1.4E-20 4.8E-25 185.9 17.6 195 328-538 37-231 (308)
95 4ay9_X Follicle-stimulating ho 99.8 2.4E-19 8.4E-24 180.6 17.6 240 311-558 12-256 (350)
96 2v9t_B SLIT homolog 2 protein 99.8 1.8E-19 6.2E-24 168.4 14.5 156 407-565 14-169 (220)
97 4ay9_X Follicle-stimulating ho 99.8 1.2E-19 4.1E-24 182.9 14.0 244 335-586 12-260 (350)
98 2xot_A Amphoterin-induced prot 99.8 1.3E-19 4.5E-24 183.3 11.7 179 383-564 21-205 (361)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 7.1E-19 2.4E-23 164.4 14.7 157 407-566 14-171 (220)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 2.1E-19 7.2E-24 168.0 10.9 153 383-538 14-167 (220)
101 2v9t_B SLIT homolog 2 protein 99.8 2.1E-19 7.1E-24 168.0 10.8 151 384-537 15-165 (220)
102 2o6s_A Variable lymphocyte rec 99.8 1.2E-18 4.1E-23 161.8 14.7 130 357-486 29-158 (208)
103 3e6j_A Variable lymphocyte rec 99.8 2.7E-18 9.4E-23 161.6 15.8 156 406-565 21-176 (229)
104 2o6s_A Variable lymphocyte rec 99.8 7.5E-18 2.6E-22 156.3 18.1 132 104-235 29-161 (208)
105 1h6t_A Internalin B; cell adhe 99.8 2.8E-18 9.5E-23 167.8 15.4 190 333-562 25-214 (291)
106 2xot_A Amphoterin-induced prot 99.8 1.7E-18 5.7E-23 175.2 13.6 176 359-537 21-202 (361)
107 3cvr_A Invasion plasmid antige 99.8 5.4E-18 1.8E-22 179.5 16.9 185 333-545 60-251 (571)
108 3e6j_A Variable lymphocyte rec 99.8 1.1E-17 3.7E-22 157.5 15.8 152 382-537 21-172 (229)
109 1h6t_A Internalin B; cell adhe 99.7 1E-17 3.5E-22 163.8 15.0 172 328-513 42-213 (291)
110 3cvr_A Invasion plasmid antige 99.7 1.1E-17 3.9E-22 177.0 15.4 181 357-565 60-247 (571)
111 1m9s_A Internalin B; cell inva 99.7 1.3E-17 4.3E-22 178.8 15.5 192 331-538 20-211 (605)
112 1m9s_A Internalin B; cell inva 99.7 6.6E-18 2.3E-22 180.9 13.3 188 312-515 25-212 (605)
113 4ezg_A Putative uncharacterize 99.7 1.7E-17 5.9E-22 152.3 13.1 149 405-561 45-194 (197)
114 1w8a_A SLIT protein; signaling 99.7 8.2E-18 2.8E-22 153.6 9.4 132 431-565 11-143 (192)
115 4ezg_A Putative uncharacterize 99.7 5.5E-17 1.9E-21 148.9 13.6 154 378-538 42-195 (197)
116 1xeu_A Internalin C; cellular 99.7 4.3E-17 1.5E-21 156.7 10.5 168 357-563 20-187 (263)
117 3sb4_A Hypothetical leucine ri 99.7 1.1E-16 3.6E-21 159.8 11.7 263 284-555 49-328 (329)
118 1xeu_A Internalin C; cellular 99.7 9.3E-17 3.2E-21 154.4 10.2 170 330-514 17-186 (263)
119 4fdw_A Leucine rich hypothetic 99.7 4.1E-15 1.4E-19 151.4 21.5 241 309-560 136-382 (401)
120 3sb4_A Hypothetical leucine ri 99.6 3.4E-16 1.1E-20 156.2 11.2 222 307-531 100-328 (329)
121 1dce_A Protein (RAB geranylger 99.6 2.8E-18 9.6E-23 182.8 -4.2 200 354-576 347-565 (567)
122 2ell_A Acidic leucine-rich nuc 99.6 5.7E-16 1.9E-20 138.2 11.3 134 428-563 24-162 (168)
123 1w8a_A SLIT protein; signaling 99.6 3.5E-16 1.2E-20 142.7 10.1 176 407-589 11-188 (192)
124 2wfh_A SLIT homolog 2 protein 99.6 7.9E-16 2.7E-20 140.3 12.3 131 431-565 13-143 (193)
125 2wfh_A SLIT homolog 2 protein 99.6 3.4E-16 1.2E-20 142.7 9.4 129 455-587 13-142 (193)
126 1dce_A Protein (RAB geranylger 99.6 4E-18 1.4E-22 181.6 -4.9 204 329-555 346-567 (567)
127 4fs7_A Uncharacterized protein 99.6 2.3E-14 7.9E-19 146.6 23.0 65 117-183 61-125 (394)
128 4fdw_A Leucine rich hypothetic 99.6 2.3E-14 7.8E-19 145.9 22.3 244 308-564 113-361 (401)
129 2je0_A Acidic leucine-rich nuc 99.6 1.1E-15 3.8E-20 133.3 10.7 129 427-557 16-149 (149)
130 2ell_A Acidic leucine-rich nuc 99.6 3.1E-15 1.1E-19 133.4 12.3 134 403-538 23-161 (168)
131 2o6r_A Variable lymphocyte rec 99.6 4.5E-15 1.5E-19 133.6 12.9 134 430-566 9-142 (177)
132 4b8c_D Glucose-repressible alc 99.6 3.7E-16 1.3E-20 171.8 6.8 179 373-561 217-404 (727)
133 4fs7_A Uncharacterized protein 99.6 1.5E-13 5E-18 140.7 25.2 145 328-481 249-393 (394)
134 2je0_A Acidic leucine-rich nuc 99.6 4.4E-15 1.5E-19 129.5 10.7 127 404-532 17-148 (149)
135 4b8c_D Glucose-repressible alc 99.6 1.5E-15 5.2E-20 166.9 8.0 181 347-537 215-404 (727)
136 2o6r_A Variable lymphocyte rec 99.6 1.8E-14 6.1E-19 129.7 12.7 132 454-588 9-141 (177)
137 1a9n_A U2A', U2A'; complex (nu 99.5 2.3E-14 8E-19 128.7 9.4 132 425-561 16-153 (176)
138 1ds9_A Outer arm dynein; leuci 99.5 1.1E-15 3.8E-20 140.3 -3.5 132 423-561 43-185 (198)
139 1a9n_A U2A', U2A'; complex (nu 99.5 2.5E-13 8.4E-18 121.9 11.9 132 353-488 16-152 (176)
140 4gt6_A Cell surface protein; l 99.4 4.7E-11 1.6E-15 122.0 27.6 135 50-206 55-190 (394)
141 3g39_A Variable lymphocyte rec 99.4 3.9E-13 1.3E-17 119.7 10.1 111 453-566 10-120 (170)
142 1ds9_A Outer arm dynein; leuci 99.4 3E-15 1E-19 137.4 -3.9 132 399-537 43-185 (198)
143 3g39_A Variable lymphocyte rec 99.4 6.5E-13 2.2E-17 118.2 10.6 107 430-539 11-117 (170)
144 2r9u_A Variable lymphocyte rec 99.4 7.6E-13 2.6E-17 118.2 10.3 109 454-565 14-122 (174)
145 4gt6_A Cell surface protein; l 99.4 1.1E-10 3.8E-15 119.2 25.7 244 303-558 132-388 (394)
146 2r9u_A Variable lymphocyte rec 99.4 1.8E-12 6.1E-17 115.7 10.7 106 430-538 14-119 (174)
147 3un9_A NLR family member X1; l 99.3 4.4E-13 1.5E-17 135.1 4.0 183 379-561 71-283 (372)
148 3un9_A NLR family member X1; l 99.3 3E-13 1E-17 136.3 1.3 183 355-537 71-283 (372)
149 2ifg_A High affinity nerve gro 99.2 2.1E-11 7.3E-16 122.4 10.4 132 455-589 11-146 (347)
150 4h09_A Hypothetical leucine ri 99.2 2.7E-09 9.4E-14 108.3 25.3 130 399-532 212-341 (379)
151 2ifg_A High affinity nerve gro 99.2 2.5E-11 8.4E-16 121.9 9.5 105 431-538 11-117 (347)
152 4h09_A Hypothetical leucine ri 99.2 3.6E-09 1.2E-13 107.5 23.4 147 349-500 210-356 (379)
153 2ra8_A Uncharacterized protein 98.9 2E-09 6.9E-14 107.3 9.2 58 376-436 168-227 (362)
154 2ra8_A Uncharacterized protein 98.9 1.8E-09 6.2E-14 107.6 6.4 35 356-390 107-149 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 3.4E-08 1.1E-12 88.8 6.7 112 450-561 34-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 5.3E-08 1.8E-12 87.5 5.8 114 424-537 32-164 (185)
157 3rw6_A Nuclear RNA export fact 98.4 1.4E-07 4.8E-12 88.9 3.1 65 473-538 167-234 (267)
158 3e4g_A ATP synthase subunit S, 98.3 5.6E-07 1.9E-11 78.5 4.3 84 452-535 61-150 (176)
159 3rw6_A Nuclear RNA export fact 98.2 4.7E-07 1.6E-11 85.4 3.3 85 481-566 148-238 (267)
160 3e4g_A ATP synthase subunit S, 98.1 2.5E-06 8.7E-11 74.3 4.6 82 405-486 62-149 (176)
161 3rfe_A Platelet glycoprotein I 97.7 5.8E-05 2E-09 62.7 6.1 59 504-564 12-71 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 7.4E-05 2.5E-09 66.4 7.0 110 451-560 40-169 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00017 5.9E-09 64.0 5.8 111 426-536 39-169 (197)
164 3rfe_A Platelet glycoprotein I 96.7 0.0029 1E-07 52.3 6.6 36 501-536 32-67 (130)
165 2lz0_A Uncharacterized protein 66.6 16 0.00055 27.9 6.5 47 343-390 7-53 (100)
166 2lz0_A Uncharacterized protein 65.3 16 0.00056 27.8 6.3 44 116-160 9-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.3e-71 Score=619.57 Aligned_cols=575 Identities=33% Similarity=0.537 Sum_probs=485.2
Q ss_pred CCCCCccccceeeCCCCCEEEEEcCCCCCccc---cC----------------------CCCCCCCCCCCEEECCCCCCC
Q 043685 17 SKISPCAWYGISCNDAGRVINISLRNTGLSGT---LR----------------------DLSFSSFPQLEYLDLSLNGLF 71 (620)
Q Consensus 17 ~~~~~c~~~~~~~~~~~~l~~L~l~~~~~~~~---~~----------------------~~~~~~~~~L~~L~Ls~~~i~ 71 (620)
.+.+||+|.|+.|+ .++|++|+++++.+.+. +. +..+.++++|++|+|++|.+.
T Consensus 35 ~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~ 113 (768)
T 3rgz_A 35 SNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLS 113 (768)
T ss_dssp TTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEE
T ss_pred CCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCC
Confidence 56789999999998 68999999999988875 31 157889999999999999998
Q ss_pred CcCCc--cccCCCCCCEEECCCCCCcccCCC----CCCCCcEEEccCCcCCCcCccc---cc------------------
Q 043685 72 GTIPS--QIGNLSKLSYISLDSNQLFGKIPL----ELSSIEELFLYSNHLNESFPPF---LG------------------ 124 (620)
Q Consensus 72 ~~~~~--~l~~l~~L~~L~L~~~~i~~~~~~----~l~~L~~L~ls~~~~~~~~~~~---l~------------------ 124 (620)
+.+|. .++++++|++|++++|.+.+..|. .+++|++|++++|.+++..+.. +.
T Consensus 114 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 193 (768)
T 3rgz_A 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD 193 (768)
T ss_dssp EEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESC
T ss_pred CcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCccccc
Confidence 88888 899999999999999998876664 4688888888888887665544 44
Q ss_pred ----CCCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCCCCCcCCCCcccCCCCCCcEEEcccccccccCCCCCCcee-
Q 043685 125 ----NLSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLYKNLLIGSIPSSLGNLK- 199 (620)
Q Consensus 125 ----~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~- 199 (620)
++++|++|++++|.+.+..|. ++++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|.. .++
T Consensus 194 ~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~ 270 (768)
T 3rgz_A 194 VDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKS 270 (768)
T ss_dssp CBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTT
T ss_pred CCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCC
Confidence 455555555555555544444 666666777777776666666666677777777777777666555543 444
Q ss_pred ecEEEccCCccccccCCCCCCC-CCCCEEEccCCcCCCCCCCc---------cccccccccccCCcc-cccCCCCCeeec
Q 043685 200 LIDLKLSSNQLTGYIPYSLGNV-TSLSSLLLAKNKLYGSLPPF---------VDLSINQFRGFLPPF-VGNLTNLERLGL 268 (620)
Q Consensus 200 L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~---------l~l~~~~l~~~~~~~-l~~~~~L~~L~l 268 (620)
|++|++++|.+++.+|..+... ++|++|++++|.+++..|.. ++++.|.+.+.++.. +..+++|++|++
T Consensus 271 L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~L 350 (768)
T 3rgz_A 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350 (768)
T ss_dssp CCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEEC
T ss_pred CCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeC
Confidence 7777777777776777666654 77888888888776655543 577778887766655 778888888888
Q ss_pred cCCcCCCCCCCCCCC-C-CcCeEEecCCcccccCCCCccC--CCCccEEEecCccccccccccccccCCCceeecCCCcc
Q 043685 269 MDNHLSGSIPPSLGN-S-TLTWLTFSLNHFTGYLPHDICR--GGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNL 344 (620)
Q Consensus 269 ~~~~~~~~~~~~~~~-~-~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 344 (620)
++|.+.+..|..+.. . +++.|++++|.+.+..+..+.. +++|++|++++|.+.+..|..+.++++|+.|++++|.+
T Consensus 351 s~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 430 (768)
T 3rgz_A 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430 (768)
T ss_dssp CSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE
T ss_pred cCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc
Confidence 888887777777665 4 8899999999888888877776 78899999999999999999999999999999999999
Q ss_pred ccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhh
Q 043685 345 TGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKEL 424 (620)
Q Consensus 345 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 424 (620)
.+..+..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++..|..+
T Consensus 431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence 98888899999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred hccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhh--------------------------------
Q 043685 425 GKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEIL-------------------------------- 472 (620)
Q Consensus 425 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l-------------------------------- 472 (620)
..+++|++|++++|++.+.+|..+..+++|++|++++|++++.+|..+
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSS
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999876655433
Q ss_pred --------------------------------------hCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCcc
Q 043685 473 --------------------------------------GNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGG 514 (620)
Q Consensus 473 --------------------------------------~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 514 (620)
..+++|++|++++|.+++.+|..++.+++|+.|++++|++++
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 670 (768)
T 3rgz_A 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670 (768)
T ss_dssp EEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred ccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC
Confidence 335779999999999999999999999999999999999999
Q ss_pred ccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCCcccCCCCccccCCCCCCCCCCCCCCCC
Q 043685 515 EIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKGLCGGVKGMQPC 594 (620)
Q Consensus 515 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~Np~~C~~~~~~~~c 594 (620)
.+|..++.+++|+.||+++|++++.+|..+..+++|++||+++|+++|.+|...++.++....+.|||.+||.+.. +|
T Consensus 671 ~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~--~C 748 (768)
T 3rgz_A 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP--RC 748 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC--CC
T ss_pred CCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc--CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998754 78
Q ss_pred CCC
Q 043685 595 KVY 597 (620)
Q Consensus 595 ~~~ 597 (620)
...
T Consensus 749 ~~~ 751 (768)
T 3rgz_A 749 DPS 751 (768)
T ss_dssp CSC
T ss_pred CCC
Confidence 644
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-60 Score=532.50 Aligned_cols=524 Identities=32% Similarity=0.457 Sum_probs=453.8
Q ss_pred CCEEEEEcCCCCCccccCCC--CCCCCCCCCEEECCCCCCCCcCC-------------------------cc---ccCCC
Q 043685 33 GRVINISLRNTGLSGTLRDL--SFSSFPQLEYLDLSLNGLFGTIP-------------------------SQ---IGNLS 82 (620)
Q Consensus 33 ~~l~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~Ls~~~i~~~~~-------------------------~~---l~~l~ 82 (620)
.++++|+|++|.+.+.+ +. .++++++|++|++++|.+.+..+ .. +.+++
T Consensus 100 ~~L~~L~Ls~n~l~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~ 178 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPV-TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178 (768)
T ss_dssp TTCCEEECCSSEEEEEG-GGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred CCCCEEECCCCcCCCcC-CChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence 35666666666655544 22 45555555555555555444333 33 45555
Q ss_pred CCCEEECCCCCCcccCC-CCCCCCcEEEccCCcCCCcCcccccCCCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCCC
Q 043685 83 KLSYISLDSNQLFGKIP-LELSSIEELFLYSNHLNESFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSNN 161 (620)
Q Consensus 83 ~L~~L~L~~~~i~~~~~-~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~ 161 (620)
+|++|++++|.+.+..+ ..+++|++|++++|.+++..|. ++++++|++|++++|.+++..|..+.++++|++|++++|
T Consensus 179 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 257 (768)
T 3rgz_A 179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257 (768)
T ss_dssp TCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSS
T ss_pred CCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCC
Confidence 56666666665554444 3578999999999999887777 999999999999999999888999999999999999999
Q ss_pred CCcCCCCcccCCCCCCcEEEcccccccccCCCCCCce-e-ecEEEccCCccccccCCCCCCCCCCCEEEccCCcCCCCCC
Q 043685 162 QLGGSIPLSFGNLSNLARLCLYKNLLIGSIPSSLGNL-K-LIDLKLSSNQLTGYIPYSLGNVTSLSSLLLAKNKLYGSLP 239 (620)
Q Consensus 162 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l-~-L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 239 (620)
.+.+..|.. .+++|++|++++|.+.+.+|..+... + |++|++++|.+++..|..++.+++|++|++++|.+.+.+|
T Consensus 258 ~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip 335 (768)
T 3rgz_A 258 QFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335 (768)
T ss_dssp CCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred cccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCC
Confidence 998766654 89999999999999998899888775 5 9999999999999999999999999999999999876555
Q ss_pred Cc----------cccccccccccCCcccccCC-CCCeeeccCCcCCCCCCCCCCC---CCcCeEEecCCcccccCCCCcc
Q 043685 240 PF----------VDLSINQFRGFLPPFVGNLT-NLERLGLMDNHLSGSIPPSLGN---STLTWLTFSLNHFTGYLPHDIC 305 (620)
Q Consensus 240 ~~----------l~l~~~~l~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~ 305 (620)
.. ++++.|.+.+.+|..+..++ +|+.|++++|.+.+..+..+.. ++++.|++++|.+.+..|..+.
T Consensus 336 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~ 415 (768)
T 3rgz_A 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415 (768)
T ss_dssp HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG
T ss_pred HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh
Confidence 32 78999999999999999887 9999999999998877776654 7899999999999999999999
Q ss_pred CCCCccEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEE
Q 043685 306 RGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTL 385 (620)
Q Consensus 306 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 385 (620)
.+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+.++++|++|
T Consensus 416 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 495 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495 (768)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEE
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred ECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccc-----------------
Q 043685 386 NVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEI----------------- 448 (620)
Q Consensus 386 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----------------- 448 (620)
++++|.+.+..|.++..+++|++|++++|++++.+|..+..+++|++|++++|++.+.+|..+
T Consensus 496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~ 575 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence 999999998999999999999999999999999999999999999999999999887666433
Q ss_pred -----------------------------------------------------cCCCCCCEEEccCCcCCcchhhhhhCC
Q 043685 449 -----------------------------------------------------GSLIKLEYLDFSANRFNNSVPEILGNL 475 (620)
Q Consensus 449 -----------------------------------------------------~~~~~L~~L~ls~n~l~~~~~~~l~~l 475 (620)
..+++|++|++++|.+++.+|..++.+
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 655 (768)
T 3rgz_A 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655 (768)
T ss_dssp EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc
Confidence 335779999999999999999999999
Q ss_pred CCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEc
Q 043685 476 LKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDI 555 (620)
Q Consensus 476 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 555 (620)
+.|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|++|++++|++++.+|.. ..+.++....+
T Consensus 656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~ 734 (768)
T 3rgz_A 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKF 734 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGG
T ss_pred ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999965 33445555667
Q ss_pred cCCcCc
Q 043685 556 SDNQLQ 561 (620)
Q Consensus 556 ~~N~l~ 561 (620)
.+|+-.
T Consensus 735 ~gN~~L 740 (768)
T 3rgz_A 735 LNNPGL 740 (768)
T ss_dssp CSCTEE
T ss_pred cCCchh
Confidence 777643
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.7e-58 Score=511.56 Aligned_cols=540 Identities=22% Similarity=0.222 Sum_probs=454.4
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEECCCCCCCCcCCccccCCCCCCEEECCCCCCcccCCC---CCCCCcEEE
Q 043685 33 GRVINISLRNTGLSGTLRDLSFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPL---ELSSIEELF 109 (620)
Q Consensus 33 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~---~l~~L~~L~ 109 (620)
.++++|++++|.+.+.. ...|.++++|++|++++|.+.+..+.+|.++++|++|++++|.+....+. .+++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCC-GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcC-HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 47999999999998764 66799999999999999999988899999999999999999998865432 568999999
Q ss_pred ccCCcCCCcCcccccCCCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCCCCCcCCCCcccC--CCCCCcEEEcccccc
Q 043685 110 LYSNHLNESFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSNNQLGGSIPLSFG--NLSNLARLCLYKNLL 187 (620)
Q Consensus 110 ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~--~l~~L~~L~l~~n~~ 187 (620)
+++|.+++..+..|+++++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+. .+++|++|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 999999888888999999999999999999888888899999999999999999876666554 568999999999999
Q ss_pred cccCCCCCCcee-ecEEE---------------------------ccCCccccccCCCCCCCCC--CCEEEccCCcCCCC
Q 043685 188 IGSIPSSLGNLK-LIDLK---------------------------LSSNQLTGYIPYSLGNVTS--LSSLLLAKNKLYGS 237 (620)
Q Consensus 188 ~~~~~~~l~~l~-L~~L~---------------------------l~~~~~~~~~~~~l~~l~~--L~~L~l~~n~~~~~ 237 (620)
.+..|..+..+. |++++ +++|.+++..+..+..++. |++|++++|.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~---- 259 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN---- 259 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC----
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC----
Confidence 887777666554 54444 4444444444444444432 5555555554
Q ss_pred CCCccccccccccccCCcccccCCCCCeeeccCCcCCCCCCCCCCC-CCcCeEEecCCccccc-----CC----CCccCC
Q 043685 238 LPPFVDLSINQFRGFLPPFVGNLTNLERLGLMDNHLSGSIPPSLGN-STLTWLTFSLNHFTGY-----LP----HDICRG 307 (620)
Q Consensus 238 ~~~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~-----~~----~~~~~~ 307 (620)
+.+..+..+..+++|++|++++|.+.+..+..+.. ++|+.|+++++...+. +| ..+..+
T Consensus 260 -----------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 260 -----------LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp -----------CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred -----------cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 46677788899999999999999998877777776 8999999987654431 22 367789
Q ss_pred CCccEEEecCccccccccccccccCCCceeecCCCccc--cccCcccCC--CCCCCEEECCCCcccCccCccccCCCCCc
Q 043685 308 GALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLT--GNISEALGI--YPNLTFIDLSRNNFYGEISSNWGKCPKLG 383 (620)
Q Consensus 308 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~--~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 383 (620)
++|++|++++|.+.+..+..|.++++|++|++++|.+. ......+.. .++|+.|++++|++.+..+..|..+++|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 99999999999999888888999999999999998753 233333433 36899999999999988899999999999
Q ss_pred EEECCCCccccCCC-ccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCccc--ccCCccccCCCCCCEEEcc
Q 043685 384 TLNVSMNNITGGIP-REIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLT--GRLPTEIGSLIKLEYLDFS 460 (620)
Q Consensus 384 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~ls 460 (620)
.|++++|.+.+.++ ..+..+++|++|++++|++.+..+..+..+++|++|++++|.+. +..|..+..+++|++|+++
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls 488 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECC
Confidence 99999999976544 67899999999999999999888889999999999999999886 4678889999999999999
Q ss_pred CCcCCcchhhhhhCCCCCCEecCcCCcCcccch--------hHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECC
Q 043685 461 ANRFNNSVPEILGNLLKLHYLGLSNNQFVQELP--------KELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLS 532 (620)
Q Consensus 461 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 532 (620)
+|.+++..+..+..+++|++|++++|.+.+..+ ..+.++++|+.|++++|+++...+..|..+++|+.|+++
T Consensus 489 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 568 (680)
T 1ziw_A 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECC
Confidence 999998888889999999999999999976422 237889999999999999997666789999999999999
Q ss_pred CCcCccccCccccCCCCCCEEEccCCcCccCCCCCc--ccCCCCccccCCCCCCCCCC
Q 043685 533 HNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNST--AFRNAPVEALEGNKGLCGGV 588 (620)
Q Consensus 533 ~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~~~l~~~~l~~Np~~C~~~ 588 (620)
+|+++++.+..|..+++|+.|++++|++++..+... .+++++.+++.+|||.|+|.
T Consensus 569 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 999998888889999999999999999998776543 47899999999999999986
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.1e-56 Score=484.04 Aligned_cols=518 Identities=18% Similarity=0.202 Sum_probs=330.5
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEECCCCCCCCcCCccccCCCCCCEEECCCCCCcccCCC---CCCCCcEEEc
Q 043685 34 RVINISLRNTGLSGTLRDLSFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPL---ELSSIEELFL 110 (620)
Q Consensus 34 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~---~l~~L~~L~l 110 (620)
.+++|++++|.+.+.. +..|+++++|++|++++|.+.+..|.+|.++++|++|++++|.+.+..|. .+++|++|++
T Consensus 34 ~l~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TCCEEECTTCCCSEEC-TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred cCcEEEccCCccCcCC-hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 3455555555554432 44455555555555555555444455555555555555555554433332 2344444444
Q ss_pred cCCcCCCcCcccccCCCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCCCCCcCCCCcccCCCCCCc--EEEccccccc
Q 043685 111 YSNHLNESFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSNNQLGGSIPLSFGNLSNLA--RLCLYKNLLI 188 (620)
Q Consensus 111 s~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~--~L~l~~n~~~ 188 (620)
++|.+++..+..++++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|+ .|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 44444444344444444444444444444432222233344444444444444444344444444444 4444444444
Q ss_pred ccCCCCCCceeecEEEccCCccccccCCCCCCCCCCCEEEccCCcCCCCCCCccccccccccccCCcccccCCCCCeeec
Q 043685 189 GSIPSSLGNLKLIDLKLSSNQLTGYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLERLGL 268 (620)
Q Consensus 189 ~~~~~~l~~l~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~~L~~L~l 268 (620)
+..|..+....|++|++++|... +..+..+.+++...+....+ ..+...+
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~~~l~~l~~~~~--------------------------~~~~~~~- 242 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNL---LVIFKGLKNSTIQSLWLGTF--------------------------EDMDDED- 242 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCH---HHHHHHTTTCEEEEEECCCC--------------------------TTSCCCC-
T ss_pred ccChhHhhhccccccccCCchhH---HHHhhhccccchhheechhh--------------------------ccccccc-
Confidence 44444444333444444443310 11111122211111111110 0000000
Q ss_pred cCCcCCCCCCCCCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCceeecCCCcccccc
Q 043685 269 MDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNI 348 (620)
Q Consensus 269 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 348 (620)
+.......+...+++.+++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..
T Consensus 243 ----i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~ 317 (606)
T 3t6q_A 243 ----ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC 317 (606)
T ss_dssp ----CCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGG
T ss_pred ----cChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCc
Confidence 0001111111235677777777777666677778888888888888877 67777888888888888888888777
Q ss_pred CcccCCCCCCCEEECCCCcccCccC-ccccCCCCCcEEECCCCccccCC--CccccCCCCCCEEecCCCeecccCChhhh
Q 043685 349 SEALGIYPNLTFIDLSRNNFYGEIS-SNWGKCPKLGTLNVSMNNITGGI--PREIGNSSQLQALDLSLNQIVGDIPKELG 425 (620)
Q Consensus 349 ~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 425 (620)
+..+..+++|++|++++|.+.+.++ ..+..+++|++|++++|.+.+.. +..+..+++|++|++++|++.+..+..+.
T Consensus 318 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 397 (606)
T 3t6q_A 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397 (606)
T ss_dssp GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT
T ss_pred hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc
Confidence 7778888888888888887775444 44778888888888888887554 56778888888888888888877788888
Q ss_pred ccCCCcEEEccCCcccccCCc-cccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCccc---chhHhhhccC
Q 043685 426 KSNSLTKLILRGNQLTGRLPT-EIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQE---LPKELEKLVQ 501 (620)
Q Consensus 426 ~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~---~~~~l~~l~~ 501 (620)
.+++|++|++++|++.+..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+..+++
T Consensus 398 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 477 (606)
T 3t6q_A 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477 (606)
T ss_dssp TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTT
T ss_pred CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCC
Confidence 888888888888888765544 377888888888888888877788888888888888888888652 2356788888
Q ss_pred CCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCC-cccCCCCccccCC
Q 043685 502 LSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEG 580 (620)
Q Consensus 502 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~l~~ 580 (620)
|+.|++++|++++..|..|..+++|+.|++++|++++..|+.+..++.| +|++++|++++.+|.. ..+++++.+++.+
T Consensus 478 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQ 556 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTT
T ss_pred ccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCC
Confidence 8888888888888888888888888888888888888888888888888 8888888888776654 3467888888888
Q ss_pred CCCCCCCC
Q 043685 581 NKGLCGGV 588 (620)
Q Consensus 581 Np~~C~~~ 588 (620)
|||.|+|.
T Consensus 557 N~~~c~c~ 564 (606)
T 3t6q_A 557 NPLDCTCS 564 (606)
T ss_dssp CCEECSGG
T ss_pred CCccccCC
Confidence 98888774
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.2e-54 Score=476.35 Aligned_cols=544 Identities=21% Similarity=0.198 Sum_probs=465.9
Q ss_pred EEEcCCCCCccccCCCCCCCCCCCCEEECCCCCCCCcCCccccCCCCCCEEECCCCCCcccCCC---CCCCCcEEEccCC
Q 043685 37 NISLRNTGLSGTLRDLSFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPL---ELSSIEELFLYSN 113 (620)
Q Consensus 37 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~---~l~~L~~L~ls~~ 113 (620)
.++++++++... +..+. +++++|++++|.+.+..+.+|.++++|++|++++|.+.+..|. .+++|++|++++|
T Consensus 8 ~~~cs~~~L~~i--p~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 8 VADCSHLKLTQV--PDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp EEECCSSCCSSC--CSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred eeECCCCCcccc--ccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 456666666532 33443 7999999999999988888999999999999999999887765 4699999999999
Q ss_pred cCCCcCcccccCCCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCCCCCcCCCCcccCCCCCCcEEEcccccccccCCC
Q 043685 114 HLNESFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLYKNLLIGSIPS 193 (620)
Q Consensus 114 ~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 193 (620)
.++...+..|+++++|++|++++|.+++..+..|+++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence 99887777899999999999999999977778899999999999999999988888999999999999999999876665
Q ss_pred CCCc--ee-ecEEEccCCccccccCCCCCCCCCCCEEEccCCcCCC------------CCCCccccccccccccCCcccc
Q 043685 194 SLGN--LK-LIDLKLSSNQLTGYIPYSLGNVTSLSSLLLAKNKLYG------------SLPPFVDLSINQFRGFLPPFVG 258 (620)
Q Consensus 194 ~l~~--l~-L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~------------~~~~~l~l~~~~l~~~~~~~l~ 258 (620)
.+.. .. |++|++++|.+++..+..+..+.+|+.+++.++.+.. .--..++++.|.+.+..+..+.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 4433 23 9999999999998888889999999999998876532 1223367888888888888888
Q ss_pred cCCC--CCeeeccCCcCCCCCCCCCCC-CCcCeEEecCCcccccCCCCccCCCCccEEEecCccccc-----cccc----
Q 043685 259 NLTN--LERLGLMDNHLSGSIPPSLGN-STLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQG-----TIPT---- 326 (620)
Q Consensus 259 ~~~~--L~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~---- 326 (620)
.++. |++|++++|.+.+..+..+.. ++|+.|++++|.+.+..+..+..+++|+.|++.++...+ .+|.
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~ 323 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence 7755 999999999998777777776 999999999999999999999999999999999875443 2332
Q ss_pred cccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccC--ccCccccC--CCCCcEEECCCCccccCCCccccC
Q 043685 327 SLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYG--EISSNWGK--CPKLGTLNVSMNNITGGIPREIGN 402 (620)
Q Consensus 327 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~ 402 (620)
.+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.. .....|.. .++|+.|++++|.+.+..+..|..
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 67889999999999999998888889999999999999987542 22333433 368999999999999888889999
Q ss_pred CCCCCEEecCCCeecccCC-hhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCC--cchhhhhhCCCCCC
Q 043685 403 SSQLQALDLSLNQIVGDIP-KELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFN--NSVPEILGNLLKLH 479 (620)
Q Consensus 403 l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~--~~~~~~l~~l~~L~ 479 (620)
+++|++|++++|.+.+.++ ..+..+++|++|++++|++.+..+..|..+++|++|++++|.+. +..|..+..+++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 9999999999999987555 67899999999999999999888888999999999999999986 45778899999999
Q ss_pred EecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccch--------hccCCCCCCEEECCCCcCccccCccccCCCCCC
Q 043685 480 YLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPF--------QICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLS 551 (620)
Q Consensus 480 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 551 (620)
+|++++|.+.+..+..|.++++|+.|++++|++++..+. .|..+++|+.|++++|+++.+.+..|.++++|+
T Consensus 484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence 999999999888788899999999999999999865332 378899999999999999976667899999999
Q ss_pred EEEccCCcCccCCCCC-cccCCCCccccCCCCCC
Q 043685 552 VIDISDNQLQGPVPNS-TAFRNAPVEALEGNKGL 584 (620)
Q Consensus 552 ~L~l~~N~l~~~~~~~-~~~~~l~~~~l~~Np~~ 584 (620)
+|++++|++++..+.. ..+++++.+++.+|...
T Consensus 564 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred eeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 9999999999766654 34789999999999653
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.3e-55 Score=477.09 Aligned_cols=524 Identities=21% Similarity=0.194 Sum_probs=377.3
Q ss_pred EEEcCCCCCccccCCCCCCCCCCCCEEECCCCCCCCcCCccccCCCCCCEEECCCCCCcccCCC---CCCCCcEEEccCC
Q 043685 37 NISLRNTGLSGTLRDLSFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPL---ELSSIEELFLYSN 113 (620)
Q Consensus 37 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~---~l~~L~~L~ls~~ 113 (620)
++++++.+++.. +..+. +++++|++++|.+++..+.+|.++++|++|++++|.+.+..|. .+++|++|++++|
T Consensus 15 ~~~c~~~~l~~i--p~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 15 TYQCMDQKLSKV--PDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp EEECTTSCCSSC--CTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEccCCCcccC--CCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 455666555532 22222 6777777777777766666777777777777777777665443 4467777777777
Q ss_pred cCCCcCcccccCCCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCCCCCcC-CCCcccCCCCCCcEEEcccccccccCC
Q 043685 114 HLNESFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSNNQLGG-SIPLSFGNLSNLARLCLYKNLLIGSIP 192 (620)
Q Consensus 114 ~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~ 192 (620)
++++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ ..|..++++++|++|++++|.+.+..+
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 7777777778888888888888888776666778888888888888887775 457778888888888888888777777
Q ss_pred CCCCcee-ec----EEEccCCccccccCCCCCCCCCCCEEEccCCcCCCCCCCccccccccccccCCcccccCCCCCeee
Q 043685 193 SSLGNLK-LI----DLKLSSNQLTGYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLERLG 267 (620)
Q Consensus 193 ~~l~~l~-L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~~L~~L~ 267 (620)
..+..+. |+ ++++++|.+++..+..+... +|++|++++|.+. .+..+..+.+++.++.++
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~--------------~~~~~~~~~~l~~L~~l~ 235 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNS--------------SNIMKTCLQNLAGLHVHR 235 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSC--------------HHHHHHHHHTTTTCEEEE
T ss_pred hhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccc--------------hhHHHHHhcccccccccc
Confidence 7776665 43 78888888776655555444 7888888877664 234556667777777776
Q ss_pred ccCCcCCCCC---------CCCCCCCCcCeEEe-cCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCcee
Q 043685 268 LMDNHLSGSI---------PPSLGNSTLTWLTF-SLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRV 337 (620)
Q Consensus 268 l~~~~~~~~~---------~~~~~~~~L~~L~l-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 337 (620)
+..+.+.... ...+....++.+.+ ..+.+.+..+. +..+++|+.|++.++.+. .+| .+..+++|++|
T Consensus 236 l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L 312 (606)
T 3vq2_A 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSL 312 (606)
T ss_dssp EEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEE
T ss_pred ccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEE
Confidence 6544432211 11111234555555 45566666655 777788888888888775 455 67777888888
Q ss_pred ecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccC--CCccccCCCCCCEEecCCCe
Q 043685 338 RLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGG--IPREIGNSSQLQALDLSLNQ 415 (620)
Q Consensus 338 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~ 415 (620)
++++|.+. ..+ .+ .+++|++|++++|...+.. .+..+++|++|++++|.+.+. .+..+..+++|++|++++|.
T Consensus 313 ~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 387 (606)
T 3vq2_A 313 SIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387 (606)
T ss_dssp EEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS
T ss_pred EcccccCc-ccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc
Confidence 88888884 333 34 7788888888888544333 556788888888888887744 25667778888888888888
Q ss_pred ecccCChhhhccCCCcEEEccCCcccccCC-ccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcc-cch
Q 043685 416 IVGDIPKELGKSNSLTKLILRGNQLTGRLP-TEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQ-ELP 493 (620)
Q Consensus 416 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~ 493 (620)
+.+ .+..+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|
T Consensus 388 l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 466 (606)
T 3vq2_A 388 AII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 466 (606)
T ss_dssp EEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred ccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchH
Confidence 774 45677788888888888888876655 567788888888888888887777778888888888888888876 367
Q ss_pred hHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCCcccC-C
Q 043685 494 KELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNSTAFR-N 572 (620)
Q Consensus 494 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-~ 572 (620)
..+..+++|+.|++++|++++..|..+..+++|++|++++|++++..|..|..+++|++|++++|+++...+....++ +
T Consensus 467 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~ 546 (606)
T 3vq2_A 467 NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS 546 (606)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTT
T ss_pred HhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhccc
Confidence 777888888888888888887777788888888888888888887778888888888888888888885444434454 5
Q ss_pred CCccccCCCCCCCCCC
Q 043685 573 APVEALEGNKGLCGGV 588 (620)
Q Consensus 573 l~~~~l~~Np~~C~~~ 588 (620)
++.+++.+|||.|+|.
T Consensus 547 L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 547 LAFFNLTNNSVACICE 562 (606)
T ss_dssp CCEEECCSCCCCCSST
T ss_pred CcEEEccCCCcccCCc
Confidence 8888888888888775
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.2e-54 Score=469.98 Aligned_cols=492 Identities=21% Similarity=0.201 Sum_probs=399.8
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEECCCCCCCCcCCccccCCCCCCEEECCCCCCcccC---CCCCCCCcEEE
Q 043685 33 GRVINISLRNTGLSGTLRDLSFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKI---PLELSSIEELF 109 (620)
Q Consensus 33 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L~~~~i~~~~---~~~l~~L~~L~ 109 (620)
.++++|++++|.+.+.. +..|+++++|++|++++|.+.+..|.+|+++++|++|++++|.+.+.. ...+++|++|+
T Consensus 57 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ 135 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIH-EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135 (606)
T ss_dssp TTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEE
T ss_pred ccceEEECCCCccceeC-hhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEE
Confidence 58999999999998765 788999999999999999999888999999999999999999998743 34678999999
Q ss_pred ccCCcCCCcCcccccCCCCCCEEEccCCcCCcccCccCCCCCCCC--EEeCCCCCCcCCCCcccCCCCCCcEEEcccccc
Q 043685 110 LYSNHLNESFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFLF--ELDLSNNQLGGSIPLSFGNLSNLARLCLYKNLL 187 (620)
Q Consensus 110 ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~--~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~ 187 (620)
+++|.+++.....+..+++|++|++++|.+++..+..++.+++|+ +|++++|.+.+..+..+.. .+|+.|++++|..
T Consensus 136 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~ 214 (606)
T 3t6q_A 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN 214 (606)
T ss_dssp CCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC
T ss_pred CCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchh
Confidence 999999886545555699999999999999977788899999999 9999999999777766654 6899999998874
Q ss_pred cccCCCCCCceeecEEEccCCcc---ccccCCCCCCCC--CCCEEEccCCcCCCCCCCccccccccccccCCcccccCCC
Q 043685 188 IGSIPSSLGNLKLIDLKLSSNQL---TGYIPYSLGNVT--SLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTN 262 (620)
Q Consensus 188 ~~~~~~~l~~l~L~~L~l~~~~~---~~~~~~~l~~l~--~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~~ 262 (620)
.......+....++.+.+....- ....+..+..+. +|+.+++++|.+ .+..+..+..+++
T Consensus 215 ~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l---------------~~~~~~~~~~l~~ 279 (606)
T 3t6q_A 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF---------------FNISSNTFHCFSG 279 (606)
T ss_dssp HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC---------------SSCCTTTTTTCTT
T ss_pred HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc---------------CccCHHHhccccC
Confidence 33333344455566665543211 111111122221 455555555554 3334444555566
Q ss_pred CCeeeccCCcCCCCCCCCCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCceeecCCC
Q 043685 263 LERLGLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGN 342 (620)
Q Consensus 263 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 342 (620)
|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 280 L~~L~l~~n~l~------------------------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 280 LQELDLTATHLS------------------------ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335 (606)
T ss_dssp CSEEECTTSCCS------------------------CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC
T ss_pred CCEEeccCCccC------------------------CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC
Confidence 666666665544 44556677788888888888888777778888899999999998
Q ss_pred cccc-ccCcccCCCCCCCEEECCCCcccCcc--CccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeeccc
Q 043685 343 NLTG-NISEALGIYPNLTFIDLSRNNFYGEI--SSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGD 419 (620)
Q Consensus 343 ~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 419 (620)
.+.+ .....+..+++|++|++++|.+.+.. +..+.++++|++|++++|.+.+..+..+..+++|++|++++|++.+.
T Consensus 336 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 415 (606)
T 3t6q_A 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415 (606)
T ss_dssp SSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC
T ss_pred CcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc
Confidence 8774 34455888999999999999988765 67788999999999999999877788899999999999999999866
Q ss_pred CCh-hhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcc---hhhhhhCCCCCCEecCcCCcCcccchhH
Q 043685 420 IPK-ELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNS---VPEILGNLLKLHYLGLSNNQFVQELPKE 495 (620)
Q Consensus 420 ~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 495 (620)
.+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+..|..
T Consensus 416 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 495 (606)
T 3t6q_A 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495 (606)
T ss_dssp TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT
T ss_pred ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh
Confidence 544 488899999999999999888888889999999999999999763 2356888999999999999999888899
Q ss_pred hhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCC
Q 043685 496 LEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPN 566 (620)
Q Consensus 496 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 566 (620)
|..+++|+.|++++|++++..|..+..++.| .|++++|++++..|..+..+++|+.|++++|++.+..+.
T Consensus 496 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 9999999999999999999999999999999 999999999998898899999999999999999987764
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.3e-53 Score=461.31 Aligned_cols=517 Identities=21% Similarity=0.200 Sum_probs=439.3
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEECCCCCCCCcCCccccCCCCCCEEECCCCCCcccCCC---CCCCCcEEE
Q 043685 33 GRVINISLRNTGLSGTLRDLSFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPL---ELSSIEELF 109 (620)
Q Consensus 33 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~---~l~~L~~L~ 109 (620)
.++++|++++|.+.+.. ...|+++++|++|++++|.+++..+.+|.++++|++|++++|.+.+..|. .+++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeC-hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 47999999999998765 77899999999999999999988899999999999999999999877665 468999999
Q ss_pred ccCCcCCCcCcccccCCCCCCEEEccCCcCCc-ccCccCCCCCCCCEEeCCCCCCcCCCCcccCCCCCCc----EEEccc
Q 043685 110 LYSNHLNESFPPFLGNLSNIVRLYINNNSLSS-SIPTNIGNLKFLFELDLSNNQLGGSIPLSFGNLSNLA----RLCLYK 184 (620)
Q Consensus 110 ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~----~L~l~~ 184 (620)
+++|.+++..+..++++++|++|++++|.+.+ .+|..|+++++|++|++++|.+.+..+..++.+.+|+ +|++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 99999998888889999999999999999986 4689999999999999999999988888888777765 899999
Q ss_pred ccccccCCCCCCceeecEEEccCCccc-cccCCCCCCCCCCCEEEccCCcCCCCCCCccccccccccccCCcccccCCCC
Q 043685 185 NLLIGSIPSSLGNLKLIDLKLSSNQLT-GYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNL 263 (620)
Q Consensus 185 n~~~~~~~~~l~~l~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~~L 263 (620)
|.+.+..+..+....|++|++++|.+. +..+..+..++.|+.+++..+.+...... ..+.......+..+ .+
T Consensus 191 n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l------~~~~~~~~~~l~~l-~l 263 (606)
T 3vq2_A 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL------EIFEPSIMEGLCDV-TI 263 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC------SCCCGGGGTTGGGS-EE
T ss_pred CCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcc------cccChHHhhhhhhc-cH
Confidence 999987777777778999999999876 35566678899999988876655321100 00011111122222 35
Q ss_pred Ceeec-cCCcCCCCCCCCCCC-CCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCceeecCC
Q 043685 264 ERLGL-MDNHLSGSIPPSLGN-STLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDG 341 (620)
Q Consensus 264 ~~L~l-~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 341 (620)
+.+++ ..+.+.+..+. +.. ++++.++++++.+.. ++ .+..+++|++|++.+|.+ +.+|. + .+++|++|++++
T Consensus 264 ~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~ 337 (606)
T 3vq2_A 264 DEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTM 337 (606)
T ss_dssp EEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEES
T ss_pred hheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccC
Confidence 56666 55666666665 444 889999999988864 34 788899999999999999 67884 4 899999999999
Q ss_pred CccccccCcccCCCCCCCEEECCCCcccCc--cCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeeccc
Q 043685 342 NNLTGNISEALGIYPNLTFIDLSRNNFYGE--ISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGD 419 (620)
Q Consensus 342 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 419 (620)
|...+.. .+..+++|+.|++++|.+++. .+..+..+++|++|++++|.+.+ .+..+..+++|++|++++|++.+.
T Consensus 338 n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~ 414 (606)
T 3vq2_A 338 NKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRV 414 (606)
T ss_dssp CSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEEST
T ss_pred CcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCc
Confidence 9655433 577899999999999998866 37788899999999999999884 557889999999999999999977
Q ss_pred CC-hhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCc-chhhhhhCCCCCCEecCcCCcCcccchhHhh
Q 043685 420 IP-KELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNN-SVPEILGNLLKLHYLGLSNNQFVQELPKELE 497 (620)
Q Consensus 420 ~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 497 (620)
.+ ..+..+++|++|++++|++.+..|..+..+++|++|++++|.+++ ..+..+..+++|++|++++|.+.+..|..+.
T Consensus 415 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 494 (606)
T 3vq2_A 415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494 (606)
T ss_dssp TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred cChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc
Confidence 76 678899999999999999998888899999999999999999987 4788899999999999999999988888999
Q ss_pred hccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCC-CCCEEEccCCcCccCCCCC
Q 043685 498 KLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMH-GLSVIDISDNQLQGPVPNS 567 (620)
Q Consensus 498 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~ 567 (620)
.+++|+.|++++|++++..|..+..+++|+.|++++|+++ .+|..+..++ +|++|++++|++.+..+..
T Consensus 495 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 9999999999999999999999999999999999999999 5666688887 5999999999999877754
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-52 Score=470.21 Aligned_cols=515 Identities=22% Similarity=0.209 Sum_probs=323.0
Q ss_pred cccceeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCCEEECCCCCCCCcC-CccccCCCCCCEEECCCCCCcccCCCC
Q 043685 23 AWYGISCNDAGRVINISLRNTGLSGTLRDLSFSSFPQLEYLDLSLNGLFGTI-PSQIGNLSKLSYISLDSNQLFGKIPLE 101 (620)
Q Consensus 23 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~i~~~~-~~~l~~l~~L~~L~L~~~~i~~~~~~~ 101 (620)
.|..+++ ..+++++|+|++|.+.+.. +.+|.++++|++|++++|...+.+ +.+|.++++|++|+|++|.+.
T Consensus 15 ~L~~vP~-lp~~l~~LdLs~N~i~~i~-~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~------ 86 (844)
T 3j0a_A 15 NLTQVPQ-VLNTTERLLLSFNYIRTVT-ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY------ 86 (844)
T ss_dssp CSSCCCS-SCTTCCEEEEESCCCCEEC-SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC------
T ss_pred CCCCCCC-CCCCcCEEECCCCcCCccC-hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc------
Confidence 4445554 3345666666666655443 455566666666666665433333 455666666666666666555
Q ss_pred CCCCcEEEccCCcCCCcCcccccCCCCCCEEEccCCcCCcccCcc--CCCCCCCCEEeCCCCCCcCCCC-cccCCCCCCc
Q 043685 102 LSSIEELFLYSNHLNESFPPFLGNLSNIVRLYINNNSLSSSIPTN--IGNLKFLFELDLSNNQLGGSIP-LSFGNLSNLA 178 (620)
Q Consensus 102 l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~--~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~ 178 (620)
+..|..|+++++|++|+|++|.+++..+.. |.++++|++|++++|.+.+..+ ..|+++++|+
T Consensus 87 ---------------~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 87 ---------------FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151 (844)
T ss_dssp ---------------EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred ---------------ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence 444445555555555555555554333332 4555555555555555543322 3445555555
Q ss_pred EEEcccccccccCCCCCCce--e-ecEEEccCCccccccCCCCCCCCC------CCEEEccCCcCCCCCCCccccccccc
Q 043685 179 RLCLYKNLLIGSIPSSLGNL--K-LIDLKLSSNQLTGYIPYSLGNVTS------LSSLLLAKNKLYGSLPPFVDLSINQF 249 (620)
Q Consensus 179 ~L~l~~n~~~~~~~~~l~~l--~-L~~L~l~~~~~~~~~~~~l~~l~~------L~~L~l~~n~~~~~~~~~l~l~~~~l 249 (620)
+|++++|.+.+..+..+..+ . |+.|++++|.+.+..+..+..+++ |+.|++++|.+.+..+
T Consensus 152 ~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~---------- 221 (844)
T 3j0a_A 152 SIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT---------- 221 (844)
T ss_dssp EEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTT----------
T ss_pred EEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHH----------
Confidence 55555555544444444443 2 555555555555444444443333 5666666555532221
Q ss_pred cccCCcccc---cCCCCCeeeccCC---------cCCCCCCCCCC---CCCcCeEEecCCcccccCCCCccCCCCccEEE
Q 043685 250 RGFLPPFVG---NLTNLERLGLMDN---------HLSGSIPPSLG---NSTLTWLTFSLNHFTGYLPHDICRGGALEIFI 314 (620)
Q Consensus 250 ~~~~~~~l~---~~~~L~~L~l~~~---------~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 314 (620)
..+. ...+++.+.+..+ .+.+.....+. .++++.|++++|.+.+..+..+..+++|+.|+
T Consensus 222 -----~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 296 (844)
T 3j0a_A 222 -----GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296 (844)
T ss_dssp -----SGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEE
T ss_pred -----HHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEE
Confidence 1111 1123344443321 11111111221 25677777777777777777777778888888
Q ss_pred ecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCcccc
Q 043685 315 VDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITG 394 (620)
Q Consensus 315 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 394 (620)
+++|.+.+..|..|.++++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..|.++++|++|++++|.+++
T Consensus 297 L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 297 LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp EESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 88888777777777778888888888888877777777788888888888888877777777778888888888887763
Q ss_pred CCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccC-CccccCCCCCCEEEccCCcCCcchhh-hh
Q 043685 395 GIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRL-PTEIGSLIKLEYLDFSANRFNNSVPE-IL 472 (620)
Q Consensus 395 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~ls~n~l~~~~~~-~l 472 (620)
. ..+++|+.|++++|+++ .+|.. ..+++.|++++|++.+.. +..+..+++|++|++++|.+++..+. .+
T Consensus 377 i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 447 (844)
T 3j0a_A 377 I-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447 (844)
T ss_dssp C-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS
T ss_pred c-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc
Confidence 2 22677888888888776 33332 456788888888877432 12245678888888888887754332 34
Q ss_pred hCCCCCCEecCcCCcCc-----ccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCC
Q 043685 473 GNLLKLHYLGLSNNQFV-----QELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGM 547 (620)
Q Consensus 473 ~~l~~L~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 547 (620)
..+++|+.|++++|.+. +..+..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++++..+..+.
T Consensus 448 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-- 525 (844)
T 3j0a_A 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-- 525 (844)
T ss_dssp CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--
T ss_pred ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--
Confidence 55778888888888775 23345577788888888888888888888888888888888888888877666665
Q ss_pred CCCCEEEccCCcCccCCCCCcccCCCCccccCCCCCCCCCC
Q 043685 548 HGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKGLCGGV 588 (620)
Q Consensus 548 ~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~Np~~C~~~ 588 (620)
++|+.|++++|++++.+|.. +.+++.+++.+|||.|+|.
T Consensus 526 ~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 526 ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECE 564 (844)
T ss_dssp SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSS
T ss_pred ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccc
Confidence 78888888888888877743 5678888888888888764
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.3e-50 Score=434.07 Aligned_cols=491 Identities=23% Similarity=0.229 Sum_probs=316.5
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEECCCCCCCCcCCccccCCCCCCEEECCCCCCcccCCCCCCCCcEEEccCC
Q 043685 34 RVINISLRNTGLSGTLRDLSFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPLELSSIEELFLYSN 113 (620)
Q Consensus 34 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~l~~L~~L~ls~~ 113 (620)
++++|++++|.+.+.. ...|.++++|++|++++|.+.+..+.+|.++++|++|++++|.+.
T Consensus 29 ~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~------------------ 89 (570)
T 2z63_A 29 STKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ------------------ 89 (570)
T ss_dssp SCCEEECCSCCCCEEC-TTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC------------------
T ss_pred cccEEEccCCccCccC-hhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC------------------
Confidence 4555555555555432 344555555555555555555444445555555555555555544
Q ss_pred cCCCcCcccccCCCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCCCCCcC-CCCcccCCCCCCcEEEcccccccccCC
Q 043685 114 HLNESFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSNNQLGG-SIPLSFGNLSNLARLCLYKNLLIGSIP 192 (620)
Q Consensus 114 ~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~ 192 (620)
+..+..|+++++|++|++++|.++...+..++++++|++|++++|.+.+ ..|..+.++++|++|++++|.+.+..+
T Consensus 90 ---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~ 166 (570)
T 2z63_A 90 ---SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (570)
T ss_dssp ---EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG
T ss_pred ---ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH
Confidence 4444555555555555555555553333345555555555555555543 234555555555555555555554444
Q ss_pred CCCCcee-e----cEEEccCCccccccCCCCCCCCCCCEEEccCCcCCCCCCCccccccccccccCCcccccCCCCCeee
Q 043685 193 SSLGNLK-L----IDLKLSSNQLTGYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLERLG 267 (620)
Q Consensus 193 ~~l~~l~-L----~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~~L~~L~ 267 (620)
..+..+. | +++++++|.+++..+..+... +|++|++++|... ....+..+..++.++..+
T Consensus 167 ~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~--------------~~~~~~~~~~l~~l~~~~ 231 (570)
T 2z63_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDS--------------LNVMKTCIQGLAGLEVHR 231 (570)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSC--------------TTHHHHHHHTTTTCEEEE
T ss_pred HHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEeccccccc--------------ccchhhhhcCccccceee
Confidence 4444443 3 455555555555444444433 4555555554321 111223333444444333
Q ss_pred ccCCcCCC---------CCCCCCCCCCcCeEEecCC-cccccCCCCccCCCCccEEEecCccccccccccccccCCCcee
Q 043685 268 LMDNHLSG---------SIPPSLGNSTLTWLTFSLN-HFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRV 337 (620)
Q Consensus 268 l~~~~~~~---------~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 337 (620)
+....+.. ..........++.+.+.++ .+.+..+..+..+++|+.|++.++.+. .+|..+..+ +|++|
T Consensus 232 l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L 309 (570)
T 2z63_A 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHL 309 (570)
T ss_dssp EEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEE
T ss_pred eccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEE
Confidence 32221110 0001111134556666666 566667777788888888888888877 577777777 88888
Q ss_pred ecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCC--CccccCCCCCCEEecCCCe
Q 043685 338 RLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGI--PREIGNSSQLQALDLSLNQ 415 (620)
Q Consensus 338 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~ 415 (620)
++.+|.+..... ..+++|+.|++++|.+.+..+. ..+++|++|++++|.+.... +..+..+++|++|++++|.
T Consensus 310 ~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~ 384 (570)
T 2z63_A 310 ELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384 (570)
T ss_dssp EEESCBCSSCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS
T ss_pred eeccCcccccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc
Confidence 888888774332 4677888888888877655444 56788888888888877443 5567788888888888888
Q ss_pred ecccCChhhhccCCCcEEEccCCcccccCC-ccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCc-ccch
Q 043685 416 IVGDIPKELGKSNSLTKLILRGNQLTGRLP-TEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFV-QELP 493 (620)
Q Consensus 416 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~ 493 (620)
+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +.+|
T Consensus 385 l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p 463 (570)
T 2z63_A 385 VITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463 (570)
T ss_dssp EEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred ccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch
Confidence 8754444 7788888888888888875544 45778888888888888888777888888888888888888886 4577
Q ss_pred hHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCCcc
Q 043685 494 KELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNSTA 569 (620)
Q Consensus 494 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 569 (620)
..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..|..|..+++|+.|++++|++++.+|....
T Consensus 464 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHH
Confidence 7788888888888888888877788888888888888888888877777788888888888888888887776443
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.9e-50 Score=440.48 Aligned_cols=463 Identities=20% Similarity=0.247 Sum_probs=265.9
Q ss_pred CCCCCccc---cceeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCCEEECCCCCC------CC------cCCccccCC
Q 043685 17 SKISPCAW---YGISCNDAGRVINISLRNTGLSGTLRDLSFSSFPQLEYLDLSLNGL------FG------TIPSQIGNL 81 (620)
Q Consensus 17 ~~~~~c~~---~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~i------~~------~~~~~l~~l 81 (620)
.+.++|.| .|+.|+..++|++|+|+++.+.|.+ +..++.+++|++|+|++|.+ .+ .+|... +
T Consensus 62 ~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~l-p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~ 138 (636)
T 4eco_A 62 FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRV-PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--K 138 (636)
T ss_dssp CSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEE-CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--H
T ss_pred CCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcC-ChHHhcCccceEEECcCCccccCCccccccccccCchHHH--H
Confidence 45789999 9999988899999999999999998 78999999999999999975 22 222222 3
Q ss_pred CCCCEEECCCCCCcccCCCCCC----------------------CCcEEEcc--CCcCCCcCcccccCCCCCCEEEccCC
Q 043685 82 SKLSYISLDSNQLFGKIPLELS----------------------SIEELFLY--SNHLNESFPPFLGNLSNIVRLYINNN 137 (620)
Q Consensus 82 ~~L~~L~L~~~~i~~~~~~~l~----------------------~L~~L~ls--~~~~~~~~~~~l~~l~~L~~L~Ls~n 137 (620)
.+|| ++++++.+.+..+..+. .++.+.+. .|.+++ +|..++++++|++|+|++|
T Consensus 139 ~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n 216 (636)
T 4eco_A 139 QKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNS 216 (636)
T ss_dssp HHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESC
T ss_pred HHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCC
Confidence 3455 55555555444443332 12222222 355555 6667777777777777777
Q ss_pred cCCcc-----------------cCccCC--CCCCCCEEeCCCCCCcCCCCcccCCCCCCcEEEccccc-ccc-cCCCCCC
Q 043685 138 SLSSS-----------------IPTNIG--NLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLYKNL-LIG-SIPSSLG 196 (620)
Q Consensus 138 ~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~ 196 (620)
.+++. +|..++ ++++|++|++++|.+.+..|..+.++++|++|++++|. +.+ .+|..+.
T Consensus 217 ~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~ 296 (636)
T 4eco_A 217 PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296 (636)
T ss_dssp CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH
T ss_pred ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHH
Confidence 77653 666666 67777777777776666666666677777777776665 554 4554444
Q ss_pred ceeecEEEccCCccccccCCCCCCCCCCCEEEccCCcCCCCCCCccccccccccccCCc--ccccCCCCCeeeccCCcCC
Q 043685 197 NLKLIDLKLSSNQLTGYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPP--FVGNLTNLERLGLMDNHLS 274 (620)
Q Consensus 197 ~l~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~--~l~~~~~L~~L~l~~~~~~ 274 (620)
.+. .+..+++|++|++++|.++ .+|. .+..+++|++|++++|.+.
T Consensus 297 ~L~-----------------~~~~l~~L~~L~L~~n~l~----------------~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 297 ALA-----------------DAPVGEKIQIIYIGYNNLK----------------TFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp HHH-----------------HSGGGGTCCEEECCSSCCS----------------SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred hhh-----------------ccccCCCCCEEECCCCcCC----------------ccCchhhhccCCCCCEEeCcCCcCc
Confidence 320 0112255666666555552 3444 5555666666666555544
Q ss_pred CCCCCCCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCC-CceeecCCCccccccCcccC
Q 043685 275 GSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTS-LIRVRLDGNNLTGNISEALG 353 (620)
Q Consensus 275 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~l~~~~~~~~~ 353 (620)
+.+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ ..+..+.
T Consensus 344 g~ip------------------------~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~ 397 (636)
T 4eco_A 344 GKLP------------------------AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFD 397 (636)
T ss_dssp EECC------------------------CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCC
T ss_pred cchh------------------------hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhh
Confidence 2222 2222233333333333333 34444445555 555555555555 2233333
Q ss_pred CC--CCCCEEECCCCcccCccCcccc-------CCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhh
Q 043685 354 IY--PNLTFIDLSRNNFYGEISSNWG-------KCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKEL 424 (620)
Q Consensus 354 ~l--~~L~~L~l~~n~l~~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 424 (620)
.. ++|+.|++++|.+.+..|..+. .+++|++|++++|.+....+..+..+++|++|++++|+++...+..+
T Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 477 (636)
T 4eco_A 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477 (636)
T ss_dssp TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSS
T ss_pred hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHh
Confidence 32 2556666666665555555444 44455555555555553333334445555555555555542211111
Q ss_pred hccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhh--CCCCCCEecCcCCcCcccchhHhhhccCC
Q 043685 425 GKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILG--NLLKLHYLGLSNNQFVQELPKELEKLVQL 502 (620)
Q Consensus 425 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 502 (620)
.... ..+.++++|++|++++|.++ .+|..+. .+++|++|++++|.+.+ +|..+..+++|
T Consensus 478 ~~~~-----------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L 538 (636)
T 4eco_A 478 KDEN-----------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL 538 (636)
T ss_dssp EETT-----------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSC
T ss_pred cccc-----------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCC
Confidence 1111 00111224555555555554 2333333 45555555555555543 44445555555
Q ss_pred CEEeC------CCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCC
Q 043685 503 SLLDA------SHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVP 565 (620)
Q Consensus 503 ~~L~l------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 565 (620)
+.|++ ++|++.+.+|..+..+++|+.|++++|++. .+|..+. ++|++||+++|++.....
T Consensus 539 ~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred CEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccH
Confidence 55555 567777788888888888888888888884 5666554 788888888888875443
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-47 Score=415.95 Aligned_cols=503 Identities=20% Similarity=0.205 Sum_probs=389.1
Q ss_pred CCEEECCCCCCCCcCCccccCCCCCCEEECCCCCCcccCC---CCCCCCcEEEccCCcCCCcCcccccCCCCCCEEEccC
Q 043685 60 LEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIP---LELSSIEELFLYSNHLNESFPPFLGNLSNIVRLYINN 136 (620)
Q Consensus 60 L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L~~~~i~~~~~---~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~Ls~ 136 (620)
.+.++.++..++ .+|..+. +++++|++++|.+.+..+ ..+++|++|++++|++++..+..|+++++|++|++++
T Consensus 9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 356677776665 3555443 578899999988876544 3567888888888888777777888888888888888
Q ss_pred CcCCcccCccCCCCCCCCEEeCCCCCCcCCCCcccCCCCCCcEEEcccccccc-cCCCCCCcee-ecEEEccCCcccccc
Q 043685 137 NSLSSSIPTNIGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLYKNLLIG-SIPSSLGNLK-LIDLKLSSNQLTGYI 214 (620)
Q Consensus 137 n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~-L~~L~l~~~~~~~~~ 214 (620)
|.++...+..|.++++|++|++++|.+....+..++.+++|++|++++|.+.+ .+|..+.+++ |++|++++|.+++..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 88876667788888888888888888886655568888888888888888775 3577777777 888888888877766
Q ss_pred CCCCCCCCCC----CEEEccCCcCCCCCCCccccccccccccCCcccccCCCCCeeeccCCcCCCC-CCCCCCC-CCcCe
Q 043685 215 PYSLGNVTSL----SSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLERLGLMDNHLSGS-IPPSLGN-STLTW 288 (620)
Q Consensus 215 ~~~l~~l~~L----~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~-~~L~~ 288 (620)
+..++.+++| +.+++++|.+ .+..+..+... +|++|++++|..... .+..+.. ..++.
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~l---------------~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~ 229 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNPM---------------NFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCC---------------CEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEE
T ss_pred HHHccchhccchhhhhcccCCCCc---------------eecCHHHhccC-cceeEecccccccccchhhhhcCccccce
Confidence 6667666666 6777777766 33444455444 678888877643211 1111111 23333
Q ss_pred EEecCCcc------cccCCCCccCCC--CccEEEecCc-cccccccccccccCCCceeecCCCccccccCcccCCCCCCC
Q 043685 289 LTFSLNHF------TGYLPHDICRGG--ALEIFIVDEY-RFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLT 359 (620)
Q Consensus 289 L~l~~~~~------~~~~~~~~~~~~--~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~ 359 (620)
..+....+ .......+..+. .++.+.+..+ .+.+..|..+..+++|+.|++++|.+.+ .+..+..+ +|+
T Consensus 230 ~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~ 307 (570)
T 2z63_A 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQ 307 (570)
T ss_dssp EEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCS
T ss_pred eeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-Ccc
Confidence 22221111 111122222222 3566777776 6777888899999999999999999885 45556777 999
Q ss_pred EEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccC--ChhhhccCCCcEEEccC
Q 043685 360 FIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDI--PKELGKSNSLTKLILRG 437 (620)
Q Consensus 360 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~~ 437 (620)
+|++++|.+.. ++. ..+++|+.|++++|.+....+. ..+++|++|++++|.+++.. +..+..+++|++|++++
T Consensus 308 ~L~l~~n~~~~-l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~ 382 (570)
T 2z63_A 308 HLELVNCKFGQ-FPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382 (570)
T ss_dssp EEEEESCBCSS-CCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCS
T ss_pred EEeeccCcccc-cCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCC
Confidence 99999999884 333 4688999999999998755543 67899999999999988654 67788999999999999
Q ss_pred CcccccCCccccCCCCCCEEEccCCcCCcchh-hhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCc-cc
Q 043685 438 NQLTGRLPTEIGSLIKLEYLDFSANRFNNSVP-EILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFG-GE 515 (620)
Q Consensus 438 n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~ 515 (620)
|.+.+. +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+.++++|+.|++++|+++ +.
T Consensus 383 n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 461 (570)
T 2z63_A 383 NGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461 (570)
T ss_dssp CSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcccc
Confidence 999854 4448899999999999999987655 57889999999999999999888989999999999999999998 57
Q ss_pred cchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCC-cccCCCCccccCCCCCCCCCCC
Q 043685 516 IPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKGLCGGVK 589 (620)
Q Consensus 516 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~l~~Np~~C~~~~ 589 (620)
.|..+..+++|+.|++++|++++..|..|..+++|++|++++|++++.++.. ..+++++.+++.+||+.|+|+.
T Consensus 462 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred chhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 8889999999999999999999988999999999999999999999887754 4588999999999999999864
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.1e-48 Score=433.60 Aligned_cols=500 Identities=23% Similarity=0.190 Sum_probs=416.9
Q ss_pred EEEEcCCCCCccccCCCCCCCCCCCCEEECCCCCCCCcCCccccCCCCCCEEECCCCCCcccCCCCCCCCcEEEccCCcC
Q 043685 36 INISLRNTGLSGTLRDLSFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPLELSSIEELFLYSNHL 115 (620)
Q Consensus 36 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~l~~L~~L~ls~~~~ 115 (620)
+..+.++++++.. +. -.+++++|+|++|.+++..+..|.++++|++|++++|...+
T Consensus 7 ~~~dcs~~~L~~v--P~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~------------------- 62 (844)
T 3j0a_A 7 RIAFYRFCNLTQV--PQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL------------------- 62 (844)
T ss_dssp EEEEESCCCSSCC--CS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC-------------------
T ss_pred eEEEccCCCCCCC--CC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcc-------------------
Confidence 4456667777744 22 45799999999999988888999999999999999886531
Q ss_pred CCcCcccccCCCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCCCCCcCCCCcc--cCCCCCCcEEEcccccccccCC-
Q 043685 116 NESFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSNNQLGGSIPLS--FGNLSNLARLCLYKNLLIGSIP- 192 (620)
Q Consensus 116 ~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~- 192 (620)
...|..|+++++|++|+|++|.+.+..|..|.++++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..+
T Consensus 63 -~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~ 141 (844)
T 3j0a_A 63 -TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141 (844)
T ss_dssp -EECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC
T ss_pred -ccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccc
Confidence 234778999999999999999999888999999999999999999998755554 9999999999999999987654
Q ss_pred CCCCcee-ecEEEccCCccccccCCCCCCC--CCCCEEEccCCcCCCCCCCccccccccccccCCcccccCC------CC
Q 043685 193 SSLGNLK-LIDLKLSSNQLTGYIPYSLGNV--TSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLT------NL 263 (620)
Q Consensus 193 ~~l~~l~-L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~------~L 263 (620)
..+.+++ |++|++++|.+++..+..+..+ ++|+.|++++|.+.+ ..+..+..++ .|
T Consensus 142 ~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~---------------~~~~~~~~~~~~~~~~~L 206 (844)
T 3j0a_A 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS---------------RVSVDWGKCMNPFRNMVL 206 (844)
T ss_dssp GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCC---------------CCCCCCCSSSCTTTTCCB
T ss_pred hhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccc---------------ccccchhhcCCccccCce
Confidence 5688888 9999999999998888888777 899999999998854 3333333333 49
Q ss_pred CeeeccCCcCCCCCCCCCCC----CCcCeEEecCCc---------ccccCCCCccC--CCCccEEEecCccccccccccc
Q 043685 264 ERLGLMDNHLSGSIPPSLGN----STLTWLTFSLNH---------FTGYLPHDICR--GGALEIFIVDEYRFQGTIPTSL 328 (620)
Q Consensus 264 ~~L~l~~~~~~~~~~~~~~~----~~L~~L~l~~~~---------~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l 328 (620)
+.|++++|.+.+..+..+.. ..+..+.+..+. +.+.....+.. .++|+.|++++|.+.+..+..+
T Consensus 207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~ 286 (844)
T 3j0a_A 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286 (844)
T ss_dssp SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS
T ss_pred eEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh
Confidence 99999999888776665543 677888776332 22222333433 3789999999999998888999
Q ss_pred cccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCE
Q 043685 329 RNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQA 408 (620)
Q Consensus 329 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 408 (620)
..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|.++++|+.|++++|.+....+..|..+++|++
T Consensus 287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCE
T ss_pred hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCE
Confidence 99999999999999999988889999999999999999999888999999999999999999999777778999999999
Q ss_pred EecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcch-hhhhhCCCCCCEecCcCCc
Q 043685 409 LDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSV-PEILGNLLKLHYLGLSNNQ 487 (620)
Q Consensus 409 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~-~~~l~~l~~L~~L~l~~n~ 487 (620)
|++++|.+++. ..+++|+.|++++|+++ .+|.. ..+++.|++++|.+++.. +..+..+++|+.|++++|.
T Consensus 367 L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 367 LDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp EEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred EECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCc
Confidence 99999998742 23789999999999998 55543 468999999999998743 3446689999999999999
Q ss_pred Ccccchh-HhhhccCCCEEeCCCCcCc-----cccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCc
Q 043685 488 FVQELPK-ELEKLVQLSLLDASHNLFG-----GEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQ 561 (620)
Q Consensus 488 l~~~~~~-~l~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 561 (620)
+.+..+. .+..+++|+.|++++|.++ +..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|+++
T Consensus 438 l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 517 (844)
T 3j0a_A 438 FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517 (844)
T ss_dssp CCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCS
T ss_pred ccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCC
Confidence 9765432 3566899999999999997 344567889999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCCCCccccCCCCCCC
Q 043685 562 GPVPNSTAFRNAPVEALEGNKGLC 585 (620)
Q Consensus 562 ~~~~~~~~~~~l~~~~l~~Np~~C 585 (620)
+..+.... ++++.+++.+|....
T Consensus 518 ~l~~~~~~-~~L~~L~Ls~N~l~~ 540 (844)
T 3j0a_A 518 VLSHNDLP-ANLEILDISRNQLLA 540 (844)
T ss_dssp SCCCCCCC-SCCCEEEEEEECCCC
T ss_pred ccChhhhh-ccccEEECCCCcCCC
Confidence 87665444 889999999997754
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.9e-47 Score=408.04 Aligned_cols=481 Identities=21% Similarity=0.235 Sum_probs=254.0
Q ss_pred CccccceeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCCEEECCCCCCCCcCCccccCCCCCCEEECCCCCCcccCCC
Q 043685 21 PCAWYGISCNDAGRVINISLRNTGLSGTLRDLSFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPL 100 (620)
Q Consensus 21 ~c~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~ 100 (620)
.|.|.|+ |+ ++++.++. + +..+ .++|++|++++|.+++..+.+|.++++|++|++++|.+.+..|.
T Consensus 3 ~C~~~~~-c~---------~~~~~l~~-i-p~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CD---------GRSRSFTS-I-PSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EE---------CTTSCCSS-C-CSCC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EE---------CCCCcccc-c-cccC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 4888887 74 34444542 2 3333 27899999999999888888999999999999999988754332
Q ss_pred ---CCCCCcEEEccCCcCCCcCcccccCCCCCCEEEccCCcCCcc-cCccCCCCCCCCEEeCCCCC-CcCCCCcccCCCC
Q 043685 101 ---ELSSIEELFLYSNHLNESFPPFLGNLSNIVRLYINNNSLSSS-IPTNIGNLKFLFELDLSNNQ-LGGSIPLSFGNLS 175 (620)
Q Consensus 101 ---~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~-~~~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l~ 175 (620)
.+++|++|++++|.+++..+..|+++++|++|++++|.+++. .|..++++++|++|++++|. +....+..+..++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 234444555555544444444445555555555555544431 23344444455555554444 2222223444444
Q ss_pred CCcEEEcccccccccCCCCCCceeecEEEccCCccccccCCCCCCCCCCCEEEccCCcCCCCCCCccccccccccccCCc
Q 043685 176 NLARLCLYKNLLIGSIPSSLGNLKLIDLKLSSNQLTGYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPP 255 (620)
Q Consensus 176 ~L~~L~l~~n~~~~~~~~~l~~l~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~ 255 (620)
+ |++|++++|.+++..|..+..+++|++|++++|.+. ..+.
T Consensus 149 ~-----------------------L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~----------------~~~~ 189 (549)
T 2z81_A 149 S-----------------------LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA----------------FLLE 189 (549)
T ss_dssp E-----------------------EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST----------------THHH
T ss_pred c-----------------------cCeeeccCCcccccChhhhhccccCceEecccCccc----------------ccch
Confidence 4 455555555554444455555555555555554431 1111
Q ss_pred -ccccCCCCCeeeccCCcCCCCC--CCCCC--CCCcCeEEecCCcccccCC----CCccCCCCccEEEecCccccccc--
Q 043685 256 -FVGNLTNLERLGLMDNHLSGSI--PPSLG--NSTLTWLTFSLNHFTGYLP----HDICRGGALEIFIVDEYRFQGTI-- 324 (620)
Q Consensus 256 -~l~~~~~L~~L~l~~~~~~~~~--~~~~~--~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~-- 324 (620)
.+..+++|+.|++++|.+.+.. +..+. ..+++.|+++++.+.+..+ ..+..+++|+.+++.+|.+.+..
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~ 269 (549)
T 2z81_A 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF 269 (549)
T ss_dssp HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC
T ss_pred hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccc
Confidence 1233455555555555554321 11111 1445555555554443221 22233455556666555544311
Q ss_pred ----cccccccCCCceeecCCCcccccc-----CcccCCCCCCCEEECCCCcccCccCccc-cCCCCCcEEECCCCcccc
Q 043685 325 ----PTSLRNCTSLIRVRLDGNNLTGNI-----SEALGIYPNLTFIDLSRNNFYGEISSNW-GKCPKLGTLNVSMNNITG 394 (620)
Q Consensus 325 ----~~~l~~l~~L~~L~l~~~~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~ 394 (620)
...+..+++++.+.+.++.+.... ...+...++|+.|++++|.+.. +|..+ .++++|++|++++|.+.+
T Consensus 270 ~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~ 348 (549)
T 2z81_A 270 NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVE 348 (549)
T ss_dssp CCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCH
T ss_pred cccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCcccc
Confidence 112334455555555555443211 0111223456666666666553 33322 456666666666666654
Q ss_pred CCC---ccccCCCCCCEEecCCCeecccCC--hhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchh
Q 043685 395 GIP---REIGNSSQLQALDLSLNQIVGDIP--KELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVP 469 (620)
Q Consensus 395 ~~~---~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 469 (620)
..+ ..+..+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.++.. +
T Consensus 349 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~ 426 (549)
T 2z81_A 349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-K 426 (549)
T ss_dssp HHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-C
T ss_pred ccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-c
Confidence 332 224556666666666666653321 33555666666666666665 4555555666666666666666532 2
Q ss_pred hhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCC
Q 043685 470 EILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHG 549 (620)
Q Consensus 470 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 549 (620)
..+ .++|++|++++|.+.+.. ..+++|+.|++++|+++ .+|. ...+++|+.|++++|++++..|..|..+++
T Consensus 427 ~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 498 (549)
T 2z81_A 427 TCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTS 498 (549)
T ss_dssp TTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTT
T ss_pred chh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcc
Confidence 211 135666666666664432 34556666666666665 3332 234566666666666666555555666666
Q ss_pred CCEEEccCCcCccCCC
Q 043685 550 LSVIDISDNQLQGPVP 565 (620)
Q Consensus 550 L~~L~l~~N~l~~~~~ 565 (620)
|+.|++++|++.+..|
T Consensus 499 L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 499 LQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCEEECCSSCBCCCHH
T ss_pred cCEEEecCCCccCCCc
Confidence 6666666666655554
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.8e-46 Score=404.89 Aligned_cols=459 Identities=22% Similarity=0.209 Sum_probs=359.4
Q ss_pred CCCcEEEccCCcCCCcCcccccCCCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCCCCCcCCCCcccCCCCCCcEEEc
Q 043685 103 SSIEELFLYSNHLNESFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCL 182 (620)
Q Consensus 103 ~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 182 (620)
++|++|++++|.+++..+..|+++++|++|++++|.+++..|..|.++++|++|++++|.+.+..+..|+.+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 34444445555554566677788888888888888887666677888888888888888887666666888888888888
Q ss_pred ccccccc-cCCCCCCcee-ecEEEccCCc-cccccCCCCCCCCCCCEEEccCCcCCCCCCCccccccccccccCCccccc
Q 043685 183 YKNLLIG-SIPSSLGNLK-LIDLKLSSNQ-LTGYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGN 259 (620)
Q Consensus 183 ~~n~~~~-~~~~~l~~l~-L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~ 259 (620)
++|.+.+ ..|..+..++ |++|++++|. +....+..+..+++|++|++++|.+ .+..+..+..
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l---------------~~~~~~~l~~ 170 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL---------------RNYQSQSLKS 170 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC---------------CEECTTTTTT
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc---------------cccChhhhhc
Confidence 8887765 3456677777 8888888887 4444446799999999999999988 5567888999
Q ss_pred CCCCCeeeccCCcCCCCCCCCC-C-CCCcCeEEecCCcccccC---CCCccCCCCccEEEecCcccccccc----ccccc
Q 043685 260 LTNLERLGLMDNHLSGSIPPSL-G-NSTLTWLTFSLNHFTGYL---PHDICRGGALEIFIVDEYRFQGTIP----TSLRN 330 (620)
Q Consensus 260 ~~~L~~L~l~~~~~~~~~~~~~-~-~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~ 330 (620)
+++|++|++++|.+.. .+..+ . .++|+.|++++|.+.+.. ......+++|+.|++.++.+.+..+ ..+..
T Consensus 171 l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~ 249 (549)
T 2z81_A 171 IRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249 (549)
T ss_dssp CSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGG
T ss_pred cccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhh
Confidence 9999999999998753 33332 2 389999999999998752 2233457899999999998876443 34466
Q ss_pred cCCCceeecCCCcccccc------CcccCCCCCCCEEECCCCcccCcc-----CccccCCCCCcEEECCCCccccCCCcc
Q 043685 331 CTSLIRVRLDGNNLTGNI------SEALGIYPNLTFIDLSRNNFYGEI-----SSNWGKCPKLGTLNVSMNNITGGIPRE 399 (620)
Q Consensus 331 l~~L~~L~l~~~~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~~~ 399 (620)
+++|+.+++++|.+.+.. ...+..+++|+.|++.++.+.... +..+...++|++|++++|.+. .+|..
T Consensus 250 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~ 328 (549)
T 2z81_A 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCS 328 (549)
T ss_dssp CTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHH
T ss_pred hccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHH
Confidence 789999999999877532 234567889999999988765431 112234578999999999998 45554
Q ss_pred c-cCCCCCCEEecCCCeecccCCh---hhhccCCCcEEEccCCcccccCC--ccccCCCCCCEEEccCCcCCcchhhhhh
Q 043685 400 I-GNSSQLQALDLSLNQIVGDIPK---ELGKSNSLTKLILRGNQLTGRLP--TEIGSLIKLEYLDFSANRFNNSVPEILG 473 (620)
Q Consensus 400 ~-~~l~~L~~L~l~~n~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 473 (620)
+ ..+++|++|++++|++.+..+. .+..+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+.
T Consensus 329 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 407 (549)
T 2z81_A 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ 407 (549)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCC
T ss_pred HHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhc
Confidence 4 6799999999999999876543 36788999999999999985432 45788999999999999998 5677788
Q ss_pred CCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEE
Q 043685 474 NLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVI 553 (620)
Q Consensus 474 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 553 (620)
.+++|++|++++|.+.. +|..+ .++|+.|++++|++++.. ..+++|++|++++|+++ .+|. ...+++|++|
T Consensus 408 ~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L 478 (549)
T 2z81_A 408 WPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVM 478 (549)
T ss_dssp CCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEE
T ss_pred ccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEE
Confidence 89999999999999864 34333 368999999999999653 57899999999999998 5565 4678999999
Q ss_pred EccCCcCccCCCCC-cccCCCCccccCCCCCCCCCC
Q 043685 554 DISDNQLQGPVPNS-TAFRNAPVEALEGNKGLCGGV 588 (620)
Q Consensus 554 ~l~~N~l~~~~~~~-~~~~~l~~~~l~~Np~~C~~~ 588 (620)
++++|++++.+|.. ..+++++.+++.+|||.|+|+
T Consensus 479 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 479 KISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 99999999888764 458899999999999999885
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.5e-46 Score=411.34 Aligned_cols=456 Identities=20% Similarity=0.225 Sum_probs=271.0
Q ss_pred cceeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCCEEEC-CCCCCCCcCCcc--------------------------
Q 043685 25 YGISCNDAGRVINISLRNTGLSGTLRDLSFSSFPQLEYLDL-SLNGLFGTIPSQ-------------------------- 77 (620)
Q Consensus 25 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L-s~~~i~~~~~~~-------------------------- 77 (620)
.|+.|+..++|++|+|+++++.|.+ +..++++++|++|+| ++|.+.+..+-.
T Consensus 315 ~GV~C~~~~~V~~L~Ls~~~L~G~i-p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~ 393 (876)
T 4ecn_A 315 PGVDLDNNGRVTGLSLAGFGAKGRV-PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD 393 (876)
T ss_dssp TTEEECTTSCEEEEECTTTCCEEEE-CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTC
T ss_pred CceEecCCCCEEEEECccCCCCCcC-chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhc
Confidence 9999998889999999999999998 789999999999999 787654431111
Q ss_pred -----------------------c--cCCCCCCEEECCC--CCCcccCCC---CCCCCcEEEccCCcCCC----------
Q 043685 78 -----------------------I--GNLSKLSYISLDS--NQLFGKIPL---ELSSIEELFLYSNHLNE---------- 117 (620)
Q Consensus 78 -----------------------l--~~l~~L~~L~L~~--~~i~~~~~~---~l~~L~~L~ls~~~~~~---------- 117 (620)
+ .....++.+.+.. |.+.+ +|. .+++|++|++++|.+++
T Consensus 394 ~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~ 472 (876)
T 4ecn_A 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA 472 (876)
T ss_dssp CCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred cCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccc
Confidence 0 1112233333333 56665 555 45889999999999988
Q ss_pred -------cCccccc--CCCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCCCC-CcC-CCCcccCCC-------CCCcE
Q 043685 118 -------SFPPFLG--NLSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSNNQ-LGG-SIPLSFGNL-------SNLAR 179 (620)
Q Consensus 118 -------~~~~~l~--~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~-l~~-~~~~~l~~l-------~~L~~ 179 (620)
.+|..++ ++++|++|+|++|.+.+.+|..|.++++|++|++++|. +++ .+|..+..+ ++|++
T Consensus 473 s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~ 552 (876)
T 4ecn_A 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552 (876)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCE
T ss_pred ccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccE
Confidence 3788877 99999999999999888889999999999999999997 776 566655544 48888
Q ss_pred EEcccccccccCCC--CCCcee-ecEEEccCCccccccCCCCCCCCCCCEEEccCCcCCCCCCCccccccccccccCCcc
Q 043685 180 LCLYKNLLIGSIPS--SLGNLK-LIDLKLSSNQLTGYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPF 256 (620)
Q Consensus 180 L~l~~n~~~~~~~~--~l~~l~-L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~ 256 (620)
|++++|.+. .+|. .+..+. |++|++++|.++ .+| .+..+++|+.|++++|.+. .+|..
T Consensus 553 L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~----------------~lp~~ 613 (876)
T 4ecn_A 553 FYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE----------------EIPED 613 (876)
T ss_dssp EECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS----------------CCCTT
T ss_pred EEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc----------------cchHH
Confidence 888888777 6666 666666 777777777766 444 6666777777777666652 34445
Q ss_pred cccCCC-CCeeeccCCcCCCCCCCCCCCCCcCeEEecCCcccccCCCCccCCC--CccEEEecCccccccccccccccCC
Q 043685 257 VGNLTN-LERLGLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGG--ALEIFIVDEYRFQGTIPTSLRNCTS 333 (620)
Q Consensus 257 l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~l~~l~~ 333 (620)
+..+++ |+.|++++|.+. .+|.. +...+ +|+.|++++|.+.+..|.....
T Consensus 614 l~~l~~~L~~L~Ls~N~L~-~lp~~-----------------------~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~--- 666 (876)
T 4ecn_A 614 FCAFTDQVEGLGFSHNKLK-YIPNI-----------------------FNAKSVYVMGSVDFSYNKIGSEGRNISCS--- 666 (876)
T ss_dssp SCEECTTCCEEECCSSCCC-SCCSC-----------------------CCTTCSSCEEEEECCSSCTTTTSSSCSSC---
T ss_pred HhhccccCCEEECcCCCCC-cCchh-----------------------hhccccCCCCEEECcCCcCCCccccchhh---
Confidence 555565 666666666554 22221 11111 1333333333333222110000
Q ss_pred CceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCcc-ccCCCCCCEEecC
Q 043685 334 LIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPRE-IGNSSQLQALDLS 412 (620)
Q Consensus 334 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~ 412 (620)
.....+++|+.|++++|.+.......+..+++|+.|++++|.+. .+|.. +....
T Consensus 667 ----------------l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~-------- 721 (876)
T 4ecn_A 667 ----------------MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKD-------- 721 (876)
T ss_dssp ----------------TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTT--------
T ss_pred ----------------hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccc--------
Confidence 00001234555555555555332222334555555555555555 22221 11110
Q ss_pred CCeecccCChhhhccCCCcEEEccCCcccccCCcccc--CCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcc
Q 043685 413 LNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIG--SLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQ 490 (620)
Q Consensus 413 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 490 (620)
..+.++++|++|++++|+++ .+|..+. .+++|+.|++++|.+++ +|..+..+++|+.|++++|+
T Consensus 722 ---------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~--- 787 (876)
T 4ecn_A 722 ---------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR--- 787 (876)
T ss_dssp ---------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB---
T ss_pred ---------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC---
Confidence 00112335666666666655 4555554 56666666666666654 45555566666666666554
Q ss_pred cchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCCcc-
Q 043685 491 ELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNSTA- 569 (620)
Q Consensus 491 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~- 569 (620)
++++|++.+.+|..+..+++|+.|++++|++ +.+|..+. ++|+.|||++|++....+....
T Consensus 788 ---------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~ 849 (876)
T 4ecn_A 788 ---------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCP 849 (876)
T ss_dssp ---------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHH
T ss_pred ---------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccc
Confidence 4455555555555555556666666666665 34444433 4566666666665543332211
Q ss_pred cCCCCccccCCCCCCC
Q 043685 570 FRNAPVEALEGNKGLC 585 (620)
Q Consensus 570 ~~~l~~~~l~~Np~~C 585 (620)
........+.+|++.+
T Consensus 850 ~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 850 YIEAGMYVLLYDKTQD 865 (876)
T ss_dssp HHHTTCCEEECCTTSE
T ss_pred cccchheeecCCCccc
Confidence 1123344555555443
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.9e-44 Score=393.94 Aligned_cols=507 Identities=22% Similarity=0.203 Sum_probs=328.8
Q ss_pred CCCEEECCCCCCCCcCCccccCCCCCCEEECCCCCCcccCCC---CCCCCcEEEccCCcCCCcCcccccCCCCCCEEEcc
Q 043685 59 QLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPL---ELSSIEELFLYSNHLNESFPPFLGNLSNIVRLYIN 135 (620)
Q Consensus 59 ~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~---~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~Ls 135 (620)
++++|||++|.|++..+.+|.++++|++|+|++|+|.+..+. .+++|++|+|++|+++...+..|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 566666666666655556666666666666666666544332 34666666666666666666667777777777777
Q ss_pred CCcCCcccCccCCCCCCCCEEeCCCCCCcCC-CCcccCCCCCCcEEEcccccccccCCCCCCcee-----ecEEEccCCc
Q 043685 136 NNSLSSSIPTNIGNLKFLFELDLSNNQLGGS-IPLSFGNLSNLARLCLYKNLLIGSIPSSLGNLK-----LIDLKLSSNQ 209 (620)
Q Consensus 136 ~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-----L~~L~l~~~~ 209 (620)
+|.+++..+..|+++++|++|++++|.+... .|..+..+++|++|++++|.+.+..+..+..+. ...++++.|.
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence 7777655555677777777777777776542 455666777777777777777665555554432 3456666676
Q ss_pred cccccCCCCCCCCCCCEEEccCCcCCCCCCCccccccccccccCCcccccCCCCCeeeccCCcCCC------CCCCCCCC
Q 043685 210 LTGYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLERLGLMDNHLSG------SIPPSLGN 283 (620)
Q Consensus 210 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~------~~~~~~~~ 283 (620)
+....+..+ ....++.+++.+|... ....+..+..+..++...+..+.... .....+..
T Consensus 213 l~~i~~~~~-~~~~~~~l~l~~n~~~--------------~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 277 (635)
T 4g8a_A 213 MNFIQPGAF-KEIRLHKLTLRNNFDS--------------LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 277 (635)
T ss_dssp CCEECTTTT-TTCEEEEEEEESCCSS--------------HHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG
T ss_pred ccccCcccc-cchhhhhhhhhccccc--------------ccccchhhcCCccccccccccccccccccccccccccccc
Confidence 664443333 3334555666655432 11122233444444444443222111 11111111
Q ss_pred -CCcCeEEecCCcc---cccCCCCccCCCCccEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCC
Q 043685 284 -STLTWLTFSLNHF---TGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLT 359 (620)
Q Consensus 284 -~~L~~L~l~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~ 359 (620)
..+....+..+.. .......+.....++.+.+.++.+.... .+.....++.|++.++.+..... ..++.|+
T Consensus 278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~ 352 (635)
T 4g8a_A 278 LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT---LKLKSLK 352 (635)
T ss_dssp GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC---CBCTTCC
T ss_pred ccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCc---ccchhhh
Confidence 2222233222211 1123334455667777777777665332 24455678888888877765433 2456777
Q ss_pred EEECCCCcccCccCccccCCCCCcEEECCCCcccc--CCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccC
Q 043685 360 FIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITG--GIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRG 437 (620)
Q Consensus 360 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 437 (620)
.+++..|.+.... .+..+++|+.++++.|.+.. ..+..+..+.+|+++++..+.... .+..+..+++|+.+++.+
T Consensus 353 ~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~ 429 (635)
T 4g8a_A 353 RLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH 429 (635)
T ss_dssp EEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTT
T ss_pred hcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhh
Confidence 8888777665332 33467888888888887652 234455667788888888887763 344567788888888888
Q ss_pred CcccccCC-ccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcc-cchhHhhhccCCCEEeCCCCcCccc
Q 043685 438 NQLTGRLP-TEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQ-ELPKELEKLVQLSLLDASHNLFGGE 515 (620)
Q Consensus 438 n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~ 515 (620)
+......+ ..+..+++++.++++.|.+....+..+..++.++.|++++|.+.. ..|..|..+++|+.|++++|++++.
T Consensus 430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l 509 (635)
T 4g8a_A 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509 (635)
T ss_dssp SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCc
Confidence 77654433 456778888888888888887777788888888888888887543 4567788888888888888888888
Q ss_pred cchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCCcc-c-CCCCccccCCCCCCCCCC
Q 043685 516 IPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNSTA-F-RNAPVEALEGNKGLCGGV 588 (620)
Q Consensus 516 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~-~~l~~~~l~~Np~~C~~~ 588 (620)
.|..|.++++|++|+|++|+++++.|..|..+++|++||+++|+|++..|.... + ++++.+++.+|||.|+|.
T Consensus 510 ~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 510 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred ChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 888888888888888888888888788888888888888888888887776533 3 578888888888888873
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4e-45 Score=391.33 Aligned_cols=464 Identities=21% Similarity=0.195 Sum_probs=259.1
Q ss_pred EEEEcCCCCCccccCCCCCCCCCCCCEEECCCCCCCCcCCccccCCCCCCEEECCCCCCcccCCCCCCCCcEEEccCCcC
Q 043685 36 INISLRNTGLSGTLRDLSFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPLELSSIEELFLYSNHL 115 (620)
Q Consensus 36 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~l~~L~~L~ls~~~~ 115 (620)
++++++++++.. + +..+. ++|++|++++|.+.+..+.+|.++++|++|++++|++.
T Consensus 3 ~~l~ls~n~l~~-i-p~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-------------------- 58 (520)
T 2z7x_B 3 FLVDRSKNGLIH-V-PKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-------------------- 58 (520)
T ss_dssp CEEECTTSCCSS-C-CCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC--------------------
T ss_pred ceEecCCCCccc-c-ccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccC--------------------
Confidence 567888888774 3 33343 78888888888887776778888888888888888775
Q ss_pred CCcCcccccCCCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCCCCCcC-CCCcccCCCCCCcEEEcccccccccCCCC
Q 043685 116 NESFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSNNQLGG-SIPLSFGNLSNLARLCLYKNLLIGSIPSS 194 (620)
Q Consensus 116 ~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 194 (620)
+..|..|+++++|++|++++|.++ .+|.. .+++|++|++++|.+.+ ..|..++.+++|++|++++|.+.+.....
T Consensus 59 -~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 134 (520)
T 2z7x_B 59 -YLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134 (520)
T ss_dssp -EEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGG
T ss_pred -CcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccc
Confidence 444566777777777777777776 34444 67777777777777765 34566777777777777777665422222
Q ss_pred CCceeecEEEccCCcc--ccccCCCCCCCC-CCCEEEccCCcCCCCCCCccccccccccccCCcccccCCCCCeeeccCC
Q 043685 195 LGNLKLIDLKLSSNQL--TGYIPYSLGNVT-SLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLERLGLMDN 271 (620)
Q Consensus 195 l~~l~L~~L~l~~~~~--~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~~ 271 (620)
+..+.|++|++++|.+ .+..|..+..+. ....+++.+|.+. .......+..+++|+.+++++|
T Consensus 135 l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~--------------~~~~~~~~~~l~~L~~L~l~~n 200 (520)
T 2z7x_B 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF--------------HFILDVSVKTVANLELSNIKCV 200 (520)
T ss_dssp GTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCC--------------CCCCCCCCTTCSEEEECCEEEC
T ss_pred cccceeeEEEeecccccccccccccccccccceEEEEeccCcch--------------hhhhhhhhhcccceeecccccc
Confidence 2222236666666666 445555554443 1223344444432 1122223444555555555554
Q ss_pred cCCCCCCCCCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCcccccccccccc---ccCCCceeecCCCcccccc
Q 043685 272 HLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLR---NCTSLIRVRLDGNNLTGNI 348 (620)
Q Consensus 272 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~l~~L~~L~l~~~~l~~~~ 348 (620)
...... ..+.+.++ .+..+++|+.|++.++.+.+..+..+. ..++|++|++++|.+.+..
T Consensus 201 ~~~~~~----------------~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 263 (520)
T 2z7x_B 201 LEDNKC----------------SYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL 263 (520)
T ss_dssp CSTTTT----------------HHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCC
T ss_pred cccccc----------------ceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcc
Confidence 311000 00122222 344455555555555544432211110 1246666666666666544
Q ss_pred Cccc-----CCCCCCCEEECCCCcccCccC-ccccCC---CCCcEEECCCCccccCCCccccCCCCCCEEecCCCeeccc
Q 043685 349 SEAL-----GIYPNLTFIDLSRNNFYGEIS-SNWGKC---PKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGD 419 (620)
Q Consensus 349 ~~~~-----~~l~~L~~L~l~~n~l~~~~~-~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 419 (620)
+..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|.+++.
T Consensus 264 p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~ 339 (520)
T 2z7x_B 264 DFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDT 339 (520)
T ss_dssp CCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTT
T ss_pred ccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChh
Confidence 5444 5566666666666655 222 222222 45666666666654221 124556666666666666655
Q ss_pred CChhhhccCCCcEEEccCCcccc--cCCccccCCCCCCEEEccCCcCCcchh-hhhhCCCCCCEecCcCCcCcccchhHh
Q 043685 420 IPKELGKSNSLTKLILRGNQLTG--RLPTEIGSLIKLEYLDFSANRFNNSVP-EILGNLLKLHYLGLSNNQFVQELPKEL 496 (620)
Q Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l 496 (620)
.|..+..+++|++|++++|++++ .+|..+..+++|++|++++|.+.+.+| ..+..+++|++|++++|.+.+..|..+
T Consensus 340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 419 (520)
T 2z7x_B 340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419 (520)
T ss_dssp TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC
T ss_pred hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh
Confidence 55556666666666666666653 233445556666666666666655233 235555666666666666654444333
Q ss_pred hhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCC
Q 043685 497 EKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVP 565 (620)
Q Consensus 497 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 565 (620)
. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++.+.+..|..+++|++|++++|++++..+
T Consensus 420 ~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 420 P--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp C--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred c--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 2 45666666666666 444444456666666666666653322335556666666666666655443
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.1e-43 Score=390.44 Aligned_cols=515 Identities=22% Similarity=0.222 Sum_probs=409.9
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCCEEECCCCCCCCcCCccccCCCCCCEEECCCCCCcccCC---CCCCCCcEEEc
Q 043685 34 RVINISLRNTGLSGTLRDLSFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIP---LELSSIEELFL 110 (620)
Q Consensus 34 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L~~~~i~~~~~---~~l~~L~~L~l 110 (620)
.+++|+|++|.+++. ++.+|.++++|++|+|++|.|++..+++|.++++|++|+|++|++.+..+ ..+++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 689999999999965 47899999999999999999998888899999999999999999986544 46799999999
Q ss_pred cCCcCCCcCcccccCCCCCCEEEccCCcCCc-ccCccCCCCCCCCEEeCCCCCCcCCCCcccCCCCCCc----EEEcccc
Q 043685 111 YSNHLNESFPPFLGNLSNIVRLYINNNSLSS-SIPTNIGNLKFLFELDLSNNQLGGSIPLSFGNLSNLA----RLCLYKN 185 (620)
Q Consensus 111 s~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~----~L~l~~n 185 (620)
++|++++..+..|+++++|++|++++|.++. ..|..++.+++|++|++++|.+.+..+..+..+.+++ .++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9999998888889999999999999999875 3578889999999999999999988888877665544 6888999
Q ss_pred cccccCCCCCCceeecEEEccCCcccc-ccCCCCCCCCCCCEEEccCCcCCCCCCCccccccccccccCCcccccCCCCC
Q 043685 186 LLIGSIPSSLGNLKLIDLKLSSNQLTG-YIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLE 264 (620)
Q Consensus 186 ~~~~~~~~~l~~l~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~~L~ 264 (620)
.+....+..+....++.+++.+|.... ..+..+..+..++...+..+..... ..+.......+.....+.
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~---------~~l~~~~~~~~~~~~~l~ 282 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE---------GNLEKFDKSALEGLCNLT 282 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTS---------CCCSCCCTTTTGGGGGSE
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccc---------cccccccccccccccchh
Confidence 998777777777778889988875442 2223355666666665544332110 011222233344445555
Q ss_pred eeeccCCcCCCCC---CCCCCC-CCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCceeecC
Q 043685 265 RLGLMDNHLSGSI---PPSLGN-STLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLD 340 (620)
Q Consensus 265 ~L~l~~~~~~~~~---~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 340 (620)
..++..+...... ...+.. ..++.+.+..+.+.... .+.....++.|++.++.+.+..+. .+..|+.+.+.
T Consensus 283 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~ 357 (635)
T 4g8a_A 283 IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFT 357 (635)
T ss_dssp EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEE
T ss_pred hhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc---cchhhhhcccc
Confidence 5555444332211 112222 67788888877765442 345567899999999988754433 45788888888
Q ss_pred CCccccccCcccCCCCCCCEEECCCCcccCc--cCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecc
Q 043685 341 GNNLTGNISEALGIYPNLTFIDLSRNNFYGE--ISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVG 418 (620)
Q Consensus 341 ~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 418 (620)
.+..... .....+++|+.+++++|.+... .+..+..+.+|+.+++..+.... .+..+..+++|+.+++..+....
T Consensus 358 ~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~ 434 (635)
T 4g8a_A 358 SNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQ 434 (635)
T ss_dssp SCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEES
T ss_pred cccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccc
Confidence 8876643 2345789999999999987543 44556678899999999998873 45567889999999999888765
Q ss_pred cC-ChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCC-cchhhhhhCCCCCCEecCcCCcCcccchhHh
Q 043685 419 DI-PKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFN-NSVPEILGNLLKLHYLGLSNNQFVQELPKEL 496 (620)
Q Consensus 419 ~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 496 (620)
.. ...+..+++++.++++.|.+.+..+..+..++.|+.|++++|.+. ...|..|..+++|++|++++|++.+..|..|
T Consensus 435 ~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f 514 (635)
T 4g8a_A 435 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 514 (635)
T ss_dssp TTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred cccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHH
Confidence 43 355788999999999999999888888999999999999999854 4567889999999999999999998889999
Q ss_pred hhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCC-CCCCEEEccCCcCccCCCC
Q 043685 497 EKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGM-HGLSVIDISDNQLQGPVPN 566 (620)
Q Consensus 497 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~ 566 (620)
.++++|+.|+|++|++++..+..|..+++|+.|++++|++++..|..|..+ ++|++|++++|++.+....
T Consensus 515 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 515 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 999999999999999999999999999999999999999999999999888 6899999999999987663
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.9e-44 Score=395.80 Aligned_cols=439 Identities=18% Similarity=0.239 Sum_probs=269.8
Q ss_pred CCCCEEECCCCCCCCcCCccccCCCCCCEEEC-CCCCCcccCCCCCCCC----c-----EEEc----------cCCcCCC
Q 043685 58 PQLEYLDLSLNGLFGTIPSQIGNLSKLSYISL-DSNQLFGKIPLELSSI----E-----ELFL----------YSNHLNE 117 (620)
Q Consensus 58 ~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L-~~~~i~~~~~~~l~~L----~-----~L~l----------s~~~~~~ 117 (620)
.+++.|+|+++.+.+.+|.+|+++++|++|+| ++|.+.+..+.....+ . .+.. ....+.+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57899999999999999999999999999999 8887765533211000 0 0000 0000000
Q ss_pred -----------cCcccccCCCCCCEEEccC--CcCCcccCccCCCCCCCCEEeCCCCCCcC-----------------CC
Q 043685 118 -----------SFPPFLGNLSNIVRLYINN--NSLSSSIPTNIGNLKFLFELDLSNNQLGG-----------------SI 167 (620)
Q Consensus 118 -----------~~~~~l~~l~~L~~L~Ls~--n~~~~~~~~~~~~l~~L~~L~l~~~~l~~-----------------~~ 167 (620)
..+........++.+.+.. |.+++ +|..|+++++|++|++++|.+.+ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0000001111222222221 33333 44444444455555554444443 14
Q ss_pred CcccC--CCCCCcEEEcccccccccCCCCCCcee-ecEEEccCCc-ccc-ccCC-------CCCCCCCCCEEEccCCcCC
Q 043685 168 PLSFG--NLSNLARLCLYKNLLIGSIPSSLGNLK-LIDLKLSSNQ-LTG-YIPY-------SLGNVTSLSSLLLAKNKLY 235 (620)
Q Consensus 168 ~~~l~--~l~~L~~L~l~~n~~~~~~~~~l~~l~-L~~L~l~~~~-~~~-~~~~-------~l~~l~~L~~L~l~~n~~~ 235 (620)
|..++ .+++|++|++++|.+.+.+|..+.+++ |++|++++|. +++ .+|. .+..+++|+.|++++|.+
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L- 560 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL- 560 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC-
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC-
Confidence 44444 555555555555555555555555554 5555555554 444 3333 234456888998888887
Q ss_pred CCCCCccccccccccccCCc--ccccCCCCCeeeccCCcCCCCCCCCCCCCCcCeEEecCCcccccCCCCccCCCCccEE
Q 043685 236 GSLPPFVDLSINQFRGFLPP--FVGNLTNLERLGLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIF 313 (620)
Q Consensus 236 ~~~~~~l~l~~~~l~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 313 (620)
. .+|. .+..+++|+.|++++|.+. .+ | .+..+++|+.|
T Consensus 561 --------------~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~l-----------------------p-~~~~L~~L~~L 600 (876)
T 4ecn_A 561 --------------E-EFPASASLQKMVKLGLLDCVHNKVR-HL-----------------------E-AFGTNVKLTDL 600 (876)
T ss_dssp --------------C-BCCCHHHHTTCTTCCEEECTTSCCC-BC-----------------------C-CCCTTSEESEE
T ss_pred --------------C-ccCChhhhhcCCCCCEEECCCCCcc-cc-----------------------h-hhcCCCcceEE
Confidence 3 4566 7888888888888888765 22 2 33334444444
Q ss_pred EecCccccccccccccccCC-CceeecCCCccccccCcccCCCC--CCCEEECCCCcccCccCccccCCCCCcEEECCCC
Q 043685 314 IVDEYRFQGTIPTSLRNCTS-LIRVRLDGNNLTGNISEALGIYP--NLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMN 390 (620)
Q Consensus 314 ~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 390 (620)
++++|.+. .+|..+..+++ |+.|++++|.+. ..+..+..++ +|+.|++++|.+.+.++...
T Consensus 601 ~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~-------------- 664 (876)
T 4ecn_A 601 KLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS-------------- 664 (876)
T ss_dssp ECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS--------------
T ss_pred ECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccch--------------
Confidence 44444444 44444444444 555555555544 2223333222 24445554444443322110
Q ss_pred ccccCCCcccc--CCCCCCEEecCCCeecccCChh-hhccCCCcEEEccCCcccccCCcccc--------CCCCCCEEEc
Q 043685 391 NITGGIPREIG--NSSQLQALDLSLNQIVGDIPKE-LGKSNSLTKLILRGNQLTGRLPTEIG--------SLIKLEYLDF 459 (620)
Q Consensus 391 ~l~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~--------~~~~L~~L~l 459 (620)
..+. .+++|++|++++|.+. .+|.. +..+++|+.|++++|++. .+|..+. ++++|++|++
T Consensus 665 -------~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~L 735 (876)
T 4ecn_A 665 -------CSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDL 735 (876)
T ss_dssp -------SCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEEC
T ss_pred -------hhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEEC
Confidence 0111 2346666777766666 33333 345677777777777776 4444332 3349999999
Q ss_pred cCCcCCcchhhhhh--CCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCc
Q 043685 460 SANRFNNSVPEILG--NLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLS 537 (620)
Q Consensus 460 s~n~l~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 537 (620)
++|.++ .+|..+. .+++|+.|++++|.+.+ +|..+..+++|+.|++++|+ ++++|++.
T Consensus 736 s~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------------------~ls~N~l~ 795 (876)
T 4ecn_A 736 RFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------------------DAEGNRIL 795 (876)
T ss_dssp CSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB------------------CTTCCBCC
T ss_pred CCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC------------------Cccccccc
Confidence 999998 5667776 89999999999999976 67788899999999999997 77889999
Q ss_pred cccCccccCCCCCCEEEccCCcCccCCCCCcccCCCCccccCCCCCCC
Q 043685 538 GSIPNCFDGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKGLC 585 (620)
Q Consensus 538 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~Np~~C 585 (620)
+.+|..+..+++|+.|+|++|++ +.+|.. .+++++.+++.+||+..
T Consensus 796 ~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 796 RQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp CCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred ccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence 99999999999999999999999 567765 34799999999999865
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.9e-45 Score=397.24 Aligned_cols=372 Identities=19% Similarity=0.235 Sum_probs=308.3
Q ss_pred CCccccccCCCCCCCCCCCEEEccCCcCCCC-CCC-ccccccccccccCCcccc--cCCCCCeeeccCCcCCCCCCCCCC
Q 043685 207 SNQLTGYIPYSLGNVTSLSSLLLAKNKLYGS-LPP-FVDLSINQFRGFLPPFVG--NLTNLERLGLMDNHLSGSIPPSLG 282 (620)
Q Consensus 207 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~-~l~l~~~~l~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~ 282 (620)
.|.+++ +|..++++++|++|++++|.+++. .+. .+.-......+.+|..+. ++++|++|++++|.+.+.+|..+.
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 467777 788899999999999999988531 000 000000011112777887 899999999999999888888887
Q ss_pred C-CCcCeEEecCCc-ccc-cCCCCccCC------CCccEEEecCccccccccc--cccccCCCceeecCCCccccccCcc
Q 043685 283 N-STLTWLTFSLNH-FTG-YLPHDICRG------GALEIFIVDEYRFQGTIPT--SLRNCTSLIRVRLDGNNLTGNISEA 351 (620)
Q Consensus 283 ~-~~L~~L~l~~~~-~~~-~~~~~~~~~------~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~ 351 (620)
. ++|+.|++++|. +++ .+|..+..+ ++|++|++++|.+. .+|. .+.++++|+.|++++|.+.+..+ .
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 7 899999999998 887 777777665 89999999999998 8888 89999999999999999996666 8
Q ss_pred cCCCCCCCEEECCCCcccCccCccccCCCC-CcEEECCCCccccCCCccccCCC--CCCEEecCCCeecccCChhhh---
Q 043685 352 LGIYPNLTFIDLSRNNFYGEISSNWGKCPK-LGTLNVSMNNITGGIPREIGNSS--QLQALDLSLNQIVGDIPKELG--- 425 (620)
Q Consensus 352 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~--- 425 (620)
+..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..++ +|++|++++|.+.+..|..+.
T Consensus 349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~ 426 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426 (636)
T ss_dssp CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence 889999999999999998 67777889999 999999999998 6677776654 899999999999988888887
Q ss_pred ----ccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCC-------CCCCEecCcCCcCcccchh
Q 043685 426 ----KSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNL-------LKLHYLGLSNNQFVQELPK 494 (620)
Q Consensus 426 ----~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l-------~~L~~L~l~~n~l~~~~~~ 494 (620)
.+++|++|++++|++++..+..+..+++|++|++++|.++...+..+... ++|++|++++|.+. .+|.
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 505 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD 505 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCG
T ss_pred cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccCh
Confidence 77899999999999994433445678999999999999985444444433 39999999999997 6777
Q ss_pred Hhh--hccCCCEEeCCCCcCccccchhccCCCCCCEEEC------CCCcCccccCccccCCCCCCEEEccCCcCccCCCC
Q 043685 495 ELE--KLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNL------SHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPN 566 (620)
Q Consensus 495 ~l~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l------~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 566 (620)
.+. .+++|+.|++++|++++ +|..+..+++|+.|++ ++|++.+.+|..+..+++|++|++++|++ +.+|.
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred hhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH
Confidence 776 99999999999999997 7888999999999999 56778889999999999999999999999 46665
Q ss_pred CcccCCCCccccCCCCCCCCC
Q 043685 567 STAFRNAPVEALEGNKGLCGG 587 (620)
Q Consensus 567 ~~~~~~l~~~~l~~Np~~C~~ 587 (620)
. .+++++.+++.+||+.|-.
T Consensus 584 ~-~~~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 584 K-ITPNISVLDIKDNPNISID 603 (636)
T ss_dssp C-CCTTCCEEECCSCTTCEEE
T ss_pred h-HhCcCCEEECcCCCCcccc
Confidence 4 3489999999999999844
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.7e-42 Score=372.35 Aligned_cols=461 Identities=20% Similarity=0.182 Sum_probs=250.0
Q ss_pred EEEEEcCCCCCccccCCCCCCCCCCCCEEECCCCCCCCcCCccccCCCCCCEEECCCCCCcccCCCCCCCCcEEEccCCc
Q 043685 35 VINISLRNTGLSGTLRDLSFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPLELSSIEELFLYSNH 114 (620)
Q Consensus 35 l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~l~~L~~L~ls~~~ 114 (620)
.++++++++++++ + +..+. ++|++|++++|.+.+..+.+|.++++|++|++++|.+.+.
T Consensus 33 ~~~l~ls~~~L~~-i-p~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~----------------- 91 (562)
T 3a79_B 33 ESMVDYSNRNLTH-V-PKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL----------------- 91 (562)
T ss_dssp CCEEECTTSCCCS-C-CTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE-----------------
T ss_pred CcEEEcCCCCCcc-C-CCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC-----------------
Confidence 3889999998885 3 33333 7899999999999877778899999999999988888743
Q ss_pred CCCcCcccccCCCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCCCCCcCC-CCcccCCCCCCcEEEcccccccccCCC
Q 043685 115 LNESFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSNNQLGGS-IPLSFGNLSNLARLCLYKNLLIGSIPS 193 (620)
Q Consensus 115 ~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~ 193 (620)
.|+.|+++++|++|++++|.++ .+|.. .+++|++|++++|.+.+. .|..|+.+++|++|++++|.+......
T Consensus 92 ----~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 164 (562)
T 3a79_B 92 ----DFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL 164 (562)
T ss_dssp ----CTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTG
T ss_pred ----CHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchh
Confidence 3444555555555555555554 33333 455555555555555432 234455555555555555544432211
Q ss_pred CCCceeecEEEccCCcc--ccccCCCCCCCC--CCCEEEccCCcCCCCCCCccccccccccccCCcccccCCCCCeeecc
Q 043685 194 SLGNLKLIDLKLSSNQL--TGYIPYSLGNVT--SLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLERLGLM 269 (620)
Q Consensus 194 ~l~~l~L~~L~l~~~~~--~~~~~~~l~~l~--~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~ 269 (620)
.+..+.|++|++++|.+ ++..+..+..+. .+ .+++++|.+.+ ......+..+++|+.++++
T Consensus 165 ~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~--------------~~~~~~~~~l~~L~~L~l~ 229 (562)
T 3a79_B 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFS--------------VQVNMSVNALGHLQLSNIK 229 (562)
T ss_dssp GGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCC--------------CCCEEEESSEEEEEEEEEE
T ss_pred hhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchh--------------hhhhhcccccceEEEeccc
Confidence 22222234445544444 333333333222 11 22333333311 0111122334444444444
Q ss_pred CCcCCCCCCCCCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCcccccc----ccccccccCCCceeecCCCccc
Q 043685 270 DNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGT----IPTSLRNCTSLIRVRLDGNNLT 345 (620)
Q Consensus 270 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~ 345 (620)
+|.... ..+.+ ....+...+.|+.+++.++.+.+. .+..+ ..++|++|++++|.+.
T Consensus 230 ~n~~~~------------------~~l~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~ 289 (562)
T 3a79_B 230 LNDENC------------------QRLMT-FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTIT 289 (562)
T ss_dssp CCSTTH------------------HHHHH-HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEEC
T ss_pred cccccc------------------chHHH-HHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEee
Confidence 442100 00000 011223334444444444433321 11111 1347777777777776
Q ss_pred cccCccc-----CCCCCCCEEECCCCcccCccC-cccc---CCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCee
Q 043685 346 GNISEAL-----GIYPNLTFIDLSRNNFYGEIS-SNWG---KCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQI 416 (620)
Q Consensus 346 ~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~-~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 416 (620)
+..+..+ ..++.|+.+++..+.+ .+| ..+. ...+|++|++++|.+.... ....+++|++|++++|.+
T Consensus 290 ~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l 365 (562)
T 3a79_B 290 ERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVF 365 (562)
T ss_dssp SCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCC
T ss_pred ccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCcc
Confidence 5544444 4444444444444444 122 1111 1245777777777664221 124566777777777777
Q ss_pred cccCChhhhccCCCcEEEccCCccccc--CCccccCCCCCCEEEccCCcCCc-chhhhhhCCCCCCEecCcCCcCcccch
Q 043685 417 VGDIPKELGKSNSLTKLILRGNQLTGR--LPTEIGSLIKLEYLDFSANRFNN-SVPEILGNLLKLHYLGLSNNQFVQELP 493 (620)
Q Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~ls~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~ 493 (620)
++..+..+..+++|++|++++|++++. +|..+..+++|++|++++|.+++ ..+..+..+++|++|++++|.+.+..|
T Consensus 366 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 445 (562)
T 3a79_B 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445 (562)
T ss_dssp CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG
T ss_pred ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh
Confidence 766666667777777777777776642 23456667777777777777765 333345666777777777777665444
Q ss_pred hHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCC
Q 043685 494 KELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVP 565 (620)
Q Consensus 494 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 565 (620)
..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++.+.+..|..+++|+.|++++|++.+..+
T Consensus 446 ~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 446 RCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp SSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred hhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 3332 56777777777776 444444466777777777777764333336666777777777777766554
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.9e-42 Score=369.16 Aligned_cols=444 Identities=18% Similarity=0.146 Sum_probs=297.2
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEECCCCCCCCcCCccccCCCCCCEEECCCCCCcccCCCCCCCCcEEEccC
Q 043685 33 GRVINISLRNTGLSGTLRDLSFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPLELSSIEELFLYS 112 (620)
Q Consensus 33 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~l~~L~~L~ls~ 112 (620)
.++++|++++|.+.+.. +..|.++++|++|++++|.+.+..|++|.++++|++|++++|++....+..+++|++|++++
T Consensus 21 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~~ 99 (520)
T 2z7x_B 21 QKTTILNISQNYISELW-TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSF 99 (520)
T ss_dssp TTCSEEECCSSCCCCCC-HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEECCS
T ss_pred ccccEEECCCCcccccC-hhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCccccCCccEEeccC
Confidence 68999999999998764 56889999999999999999988899999999999999999998732222444455555555
Q ss_pred CcCCC-cCcccccCCCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCCCCCcCCCCcccCCCCCC--cEEEcccccc--
Q 043685 113 NHLNE-SFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSNNQLGGSIPLSFGNLSNL--ARLCLYKNLL-- 187 (620)
Q Consensus 113 ~~~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L--~~L~l~~n~~-- 187 (620)
|.+++ ..|..|+++++|++|++++|. +.+ ..+..+++| ++|++++|.+
T Consensus 100 N~l~~~~~p~~~~~l~~L~~L~L~~n~------------------------l~~---~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 100 NAFDALPICKEFGNMSQLKFLGLSTTH------------------------LEK---SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp SCCSSCCCCGGGGGCTTCCEEEEEESS------------------------CCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred CccccccchhhhccCCcceEEEecCcc------------------------cch---hhccccccceeeEEEeecccccc
Confidence 55444 234444445555555555444 442 223344444 5555555555
Q ss_pred cccCCCCCCcee--ecEEEccCCccccccC-CCCCCCCCCCEEEccCCcCCCCCCCccccccccccccCCcccccCCCCC
Q 043685 188 IGSIPSSLGNLK--LIDLKLSSNQLTGYIP-YSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLE 264 (620)
Q Consensus 188 ~~~~~~~l~~l~--L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~~L~ 264 (620)
.+..|..+..+. ..++++++|.+.+..+ ..+..+++|+.+++++|..... ...+.+.++ .+..+++|+
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--------~~~~~~~~~-~l~~l~~L~ 223 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK--------CSYFLSILA-KLQTNPKLS 223 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTT--------THHHHHHHH-GGGGCTTCC
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccc--------cceeecchh-hhccccchh
Confidence 444455555443 3445566666554333 3456777888887777651100 000123333 566777888
Q ss_pred eeeccCCcCCCCCCCCCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccc-----cccCCCceeec
Q 043685 265 RLGLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSL-----RNCTSLIRVRL 339 (620)
Q Consensus 265 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l 339 (620)
.|+++++.+.+..... ..+. ...++|++|++++|.+.+.+|..+ ..+++|+.+++
T Consensus 224 ~L~l~~~~l~~~~~~~------------------~~~~--~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l 283 (520)
T 2z7x_B 224 NLTLNNIETTWNSFIR------------------ILQL--VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQV 283 (520)
T ss_dssp EEEEEEEEEEHHHHHH------------------HHHH--HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEE
T ss_pred hccccccccCHHHHHH------------------HHHH--hhhCcccEEEeecccccCccccchhhcccccCceeEeccc
Confidence 8887776654211100 0000 012244555555555554455544 55666666666
Q ss_pred CCCccccccCcccCCC---CCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCee
Q 043685 340 DGNNLTGNISEALGIY---PNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQI 416 (620)
Q Consensus 340 ~~~~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 416 (620)
.+|.+ ......+..+ ++|+.|++++|.+.... .+..+++|++|++++|.+.+..+..+..+++|++|++++|++
T Consensus 284 ~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 360 (520)
T 2z7x_B 284 VSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360 (520)
T ss_dssp EECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCC
T ss_pred cccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCcc
Confidence 66655 2221222222 46777888777765432 125678888888888888876777788888888888888888
Q ss_pred cc--cCChhhhccCCCcEEEccCCcccccCCc-cccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccch
Q 043685 417 VG--DIPKELGKSNSLTKLILRGNQLTGRLPT-EIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELP 493 (620)
Q Consensus 417 ~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 493 (620)
++ ..|..+..+++|++|++++|++.+.+|. .+..+++|++|++++|.+++..+..+. ++|++|++++|.+. .+|
T Consensus 361 ~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip 437 (520)
T 2z7x_B 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIP 437 (520)
T ss_dssp CBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCC
T ss_pred CccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccc
Confidence 75 4456688888999999999998864554 477889999999999999876665553 68999999999996 677
Q ss_pred hHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccc
Q 043685 494 KELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGS 539 (620)
Q Consensus 494 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 539 (620)
..+..+++|+.|++++|+++...+..+..+++|+.|++++|++...
T Consensus 438 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 438 KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 7777999999999999999955445588999999999999999764
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1e-39 Score=352.20 Aligned_cols=445 Identities=18% Similarity=0.113 Sum_probs=282.4
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEECCCCCCCCcCCccccCCCCCCEEECCCCCCcccCCCCCCCCcEEEccC
Q 043685 33 GRVINISLRNTGLSGTLRDLSFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPLELSSIEELFLYS 112 (620)
Q Consensus 33 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~l~~L~~L~ls~ 112 (620)
.++++|++++|.+.+.. +..|.++++|++|++++|.+++..|++|.++++|++|++++|.+.......+++|++|++++
T Consensus 52 ~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~ 130 (562)
T 3a79_B 52 PRTKALSLSQNSISELR-MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSF 130 (562)
T ss_dssp TTCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEECCS
T ss_pred CCcCEEECCCCCccccC-hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCCEEECCC
Confidence 58999999999999764 67899999999999999999988899999999999999999998743333455555555555
Q ss_pred CcCCCc-CcccccCCCCCCEEEccCCcCCcccCccCCCCCCC--CEEeCCCCCC--cCCCCcccCCCCCCcEEEcccccc
Q 043685 113 NHLNES-FPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFL--FELDLSNNQL--GGSIPLSFGNLSNLARLCLYKNLL 187 (620)
Q Consensus 113 ~~~~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L--~~L~l~~~~l--~~~~~~~l~~l~~L~~L~l~~n~~ 187 (620)
|++++. .|..|+++++|++|++++|.++.. .+..+++| ++|++++|.+ .+..|..+..+.. +
T Consensus 131 N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~-~--------- 197 (562)
T 3a79_B 131 NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT-T--------- 197 (562)
T ss_dssp SCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE-E---------
T ss_pred CCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCc-c---------
Confidence 555542 235555555555555555555431 23333333 5555555544 3333333333220 0
Q ss_pred cccCCCCCCceeecEEEccCCccccccCC-CCCCCCCCCEEEccCCcCCCCCCCccccccccccccCCcccccCCCCCee
Q 043685 188 IGSIPSSLGNLKLIDLKLSSNQLTGYIPY-SLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLERL 266 (620)
Q Consensus 188 ~~~~~~~l~~l~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~~L~~L 266 (620)
..++++++|.+.+..+. .+..+++|+.+++++|.... ..+.+ ....+..+++++.+
T Consensus 198 ------------~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~----------~~l~~-~~~~l~~l~~L~~L 254 (562)
T 3a79_B 198 ------------VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC----------QRLMT-FLSELTRGPTLLNV 254 (562)
T ss_dssp ------------EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTH----------HHHHH-HHHHHHSCSSCEEE
T ss_pred ------------eEEEEecCccchhhhhhhcccccceEEEeccccccccc----------chHHH-HHHHHhccCcceEE
Confidence 12334444444432221 23455666666666653210 00011 12235556666666
Q ss_pred eccCCcCCCCCCCCCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccc-----cccCCCceeecCC
Q 043685 267 GLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSL-----RNCTSLIRVRLDG 341 (620)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~ 341 (620)
+++++.+.+ +.+.+..+ . ...++|++|++++|.+.+.+|..+ ..++.|+.+++..
T Consensus 255 ~L~~~~l~~------------------~~~~~~~~-~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~ 314 (562)
T 3a79_B 255 TLQHIETTW------------------KCSVKLFQ-F-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKN 314 (562)
T ss_dssp EEEEEEECH------------------HHHHHHHH-H-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEE
T ss_pred EecCCcCcH------------------HHHHHHHH-h-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccc
Confidence 666554431 11111100 0 011244555555555544444443 3344444444444
Q ss_pred CccccccCcccC---CCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecc
Q 043685 342 NNLTGNISEALG---IYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVG 418 (620)
Q Consensus 342 ~~l~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 418 (620)
+.+ ......+. ...+|++|++++|.+.... ....+++|++|++++|.+.+..+..+..+++|++|++++|++++
T Consensus 315 ~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 391 (562)
T 3a79_B 315 QVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391 (562)
T ss_dssp CCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB
T ss_pred cee-ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC
Confidence 433 11101111 1246788888887765332 12567888888888888887777778888888888888888875
Q ss_pred c--CChhhhccCCCcEEEccCCcccccCCc-cccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhH
Q 043685 419 D--IPKELGKSNSLTKLILRGNQLTGRLPT-EIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKE 495 (620)
Q Consensus 419 ~--~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 495 (620)
. .|..+..+++|++|++++|++++.+|. .+..+++|++|++++|.+++..+..+. ++|++|++++|.+. .+|..
T Consensus 392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~ 468 (562)
T 3a79_B 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKD 468 (562)
T ss_dssp TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTT
T ss_pred cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChh
Confidence 2 345677888899999999988864544 477888999999999998766555443 68999999999986 56666
Q ss_pred hhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCcccc
Q 043685 496 LEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSI 540 (620)
Q Consensus 496 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 540 (620)
+..+++|+.|++++|++++..+..+..+++|+.|++++|++....
T Consensus 469 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 469 VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp TTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred hcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 668999999999999999554445889999999999999987543
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.1e-38 Score=332.22 Aligned_cols=396 Identities=20% Similarity=0.162 Sum_probs=249.9
Q ss_pred CEEECCCCCCcccCCCCCCCCcEEEccCCcCCCcCcccccCCCCCCEEEccCCcCCcc-cCccCCCCCCCCEEeCCCCCC
Q 043685 85 SYISLDSNQLFGKIPLELSSIEELFLYSNHLNESFPPFLGNLSNIVRLYINNNSLSSS-IPTNIGNLKFLFELDLSNNQL 163 (620)
Q Consensus 85 ~~L~L~~~~i~~~~~~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~-~~~~~~~l~~L~~L~l~~~~l 163 (620)
+.++.+++.+. .+|...++|++|++++|.+++..|..|+++++|++|++++|.+.+. .+..|.++++|++|++++|.+
T Consensus 13 ~~~~c~~~~l~-~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 13 YNAICINRGLH-QVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp TEEECCSSCCS-SCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred cccCcCCCCcc-cCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 34555666554 3333335566666666666655566666666666666666655422 244566666666666666666
Q ss_pred cCCCCcccCCCCCCcEEEcccccccccCCCCCCceeecEEEccCCccccccCCCCCCCCCCCEEEccCCcCCCCCCCccc
Q 043685 164 GGSIPLSFGNLSNLARLCLYKNLLIGSIPSSLGNLKLIDLKLSSNQLTGYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVD 243 (620)
Q Consensus 164 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 243 (620)
.+..|..|..+++|++|++++|.+.+..+. ...+..+++|++|++++|.++
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------------~~~~~~l~~L~~L~L~~n~l~-------- 142 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLS---------------------GNFFKPLTSLEMLVLRDNNIK-------- 142 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHH---------------------SSTTTTCTTCCEEECCSSBCC--------
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccC---------------------cccccCcccCCEEECCCCccC--------
Confidence 555555566666666666665555432111 122555666666666666552
Q ss_pred cccccccccCCcc-cccCCCCCeeeccCCcCCCCCCCCCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCccccc
Q 043685 244 LSINQFRGFLPPF-VGNLTNLERLGLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQG 322 (620)
Q Consensus 244 l~~~~l~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 322 (620)
+..+.. +..+++|++|++++|.+.+..+..+.. ....+++.|+++++.+.+
T Consensus 143 -------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~---------------------l~~~~L~~L~l~~n~l~~ 194 (455)
T 3v47_A 143 -------KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN---------------------FQGKHFTLLRLSSITLQD 194 (455)
T ss_dssp -------SCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG---------------------GTTCEEEEEECTTCBCTT
T ss_pred -------ccCcccccCCCCcccEEeCCCCcccccChhhhhc---------------------cccccccccccccCcccc
Confidence 233332 556666666666666655433322211 000223333333333222
Q ss_pred cccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccC---CCCCcEEECCCCccccCCCcc
Q 043685 323 TIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGK---CPKLGTLNVSMNNITGGIPRE 399 (620)
Q Consensus 323 ~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~ 399 (620)
..+..+. ......+..+++|++|++++|.+.+..+..+.. .++|+.|++++|...+... .
T Consensus 195 ~~~~~~~----------------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~ 257 (455)
T 3v47_A 195 MNEYWLG----------------WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF-G 257 (455)
T ss_dssp CSTTCTT----------------HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT-T
T ss_pred cchhhcc----------------ccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc-c
Confidence 1111100 000011224456667777776666555544432 3667777777776542211 0
Q ss_pred ccCCCCCCEEecCCCeecccCChhhh--ccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCC
Q 043685 400 IGNSSQLQALDLSLNQIVGDIPKELG--KSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLK 477 (620)
Q Consensus 400 ~~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~ 477 (620)
.+.+.+..+..+. ..++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++
T Consensus 258 -------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 324 (455)
T 3v47_A 258 -------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324 (455)
T ss_dssp -------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred -------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCccc
Confidence 1111111112222 2367888999999888777888888999999999999998888888889999
Q ss_pred CCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccC
Q 043685 478 LHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISD 557 (620)
Q Consensus 478 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 557 (620)
|++|++++|.+.+..+..+..+++|+.|++++|++++..|..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 325 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 404 (455)
T ss_dssp CCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccC
Confidence 99999999999888888899999999999999999988899999999999999999999987778889999999999999
Q ss_pred CcCccCCCCCc
Q 043685 558 NQLQGPVPNST 568 (620)
Q Consensus 558 N~l~~~~~~~~ 568 (620)
|++++.+|...
T Consensus 405 N~l~~~~~~~~ 415 (455)
T 3v47_A 405 NPWDCSCPRID 415 (455)
T ss_dssp SCBCCCTTTTH
T ss_pred CCcccCCCcch
Confidence 99999888554
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.8e-37 Score=326.36 Aligned_cols=352 Identities=18% Similarity=0.152 Sum_probs=270.9
Q ss_pred ecEEEccCCccccccCCCCCCCCCCCEEEccCCcCCCCCCCccccccccccccCCcccccCCCCCeeeccCCcCCCCCCC
Q 043685 200 LIDLKLSSNQLTGYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLERLGLMDNHLSGSIPP 279 (620)
Q Consensus 200 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 279 (620)
+++|++++|.+++..+..+..+++|++|++++|.+. ....+..|..+++|++|++++|.+.
T Consensus 32 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~--------------~~i~~~~~~~l~~L~~L~Ls~n~l~----- 92 (455)
T 3v47_A 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG--------------LVIRNNTFRGLSSLIILKLDYNQFL----- 92 (455)
T ss_dssp CCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT--------------CEECTTTTTTCTTCCEEECTTCTTC-----
T ss_pred cCEEEecCCccCcCChhHhccCccccEEECcCCccc--------------ceECcccccccccCCEEeCCCCccC-----
Confidence 666666666666655666666666666666666552 1222344555666666666665554
Q ss_pred CCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCcccccccccc--ccccCCCceeecCCCccccccCcc-cCCCC
Q 043685 280 SLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTS--LRNCTSLIRVRLDGNNLTGNISEA-LGIYP 356 (620)
Q Consensus 280 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~l~~~~~~~-~~~l~ 356 (620)
+..+..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..+.. +..++
T Consensus 93 ------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 154 (455)
T 3v47_A 93 ------------------QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154 (455)
T ss_dssp ------------------EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred ------------------ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence 445556666777777777777776544443 777788888888888887765554 67788
Q ss_pred CCCEEECCCCcccCccCccccCC--CCCcEEECCCCccccCCCcc--------ccCCCCCCEEecCCCeecccCChhhhc
Q 043685 357 NLTFIDLSRNNFYGEISSNWGKC--PKLGTLNVSMNNITGGIPRE--------IGNSSQLQALDLSLNQIVGDIPKELGK 426 (620)
Q Consensus 357 ~L~~L~l~~n~l~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~l~~n~~~~~~~~~~~~ 426 (620)
+|++|++++|.+.+..+..+..+ .+|+.|++++|.+....+.. +..+++|++|++++|.+++..+..+..
T Consensus 155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234 (455)
T ss_dssp TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence 88888888888887777766655 67888888888877544332 235678889999999888777766655
Q ss_pred c---CCCcEEEccCCcccccC----------Ccccc--CCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCccc
Q 043685 427 S---NSLTKLILRGNQLTGRL----------PTEIG--SLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQE 491 (620)
Q Consensus 427 l---~~L~~L~l~~n~l~~~~----------~~~~~--~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 491 (620)
. ++|+.|++++|...+.. +..+. ..++|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 4 78889998888654221 11122 236899999999999998999999999999999999999988
Q ss_pred chhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCC-ccc
Q 043685 492 LPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNS-TAF 570 (620)
Q Consensus 492 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~ 570 (620)
.|..|..+++|+.|++++|++++..+..|..+++|++|++++|++++..|..|..+++|++|++++|++++..+.. ..+
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 394 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence 8889999999999999999999888999999999999999999999988999999999999999999999866654 458
Q ss_pred CCCCccccCCCCCCCCCC
Q 043685 571 RNAPVEALEGNKGLCGGV 588 (620)
Q Consensus 571 ~~l~~~~l~~Np~~C~~~ 588 (620)
++++.+++.+||+.|+|+
T Consensus 395 ~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 395 TSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCCEEECCSSCBCCCTT
T ss_pred CcccEEEccCCCcccCCC
Confidence 899999999999999986
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.7e-36 Score=314.51 Aligned_cols=403 Identities=23% Similarity=0.252 Sum_probs=186.6
Q ss_pred CCcEEEccCCcCCCcCcccccCCCCCCEEEccCCcCCcccCccCCCCCC-------------CCEEeCCCCCCcCCCCcc
Q 043685 104 SIEELFLYSNHLNESFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKF-------------LFELDLSNNQLGGSIPLS 170 (620)
Q Consensus 104 ~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~-------------L~~L~l~~~~l~~~~~~~ 170 (620)
+|++|++++|.+ +.+|..++++++|++|++++|.+.+..|..++++++ +++|++++|.+++ +|..
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~ 89 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC
Confidence 344444444444 445666666666666666666666666666666654 3777777777664 2321
Q ss_pred cCCCCCCcEEEcccccccccCCCCCCceeecEEEccCCccccccCCCCCCCCCCCEEEccCCcCCCCCCCcccccccccc
Q 043685 171 FGNLSNLARLCLYKNLLIGSIPSSLGNLKLIDLKLSSNQLTGYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFR 250 (620)
Q Consensus 171 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~ 250 (620)
.++|++|++++|.+.+ +|..+. .|++|++++|.+++. +.. .++|++|++++|.++
T Consensus 90 ---~~~L~~L~l~~n~l~~-lp~~~~--~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~--------------- 144 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTE-LPELPQ--SLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLE--------------- 144 (454)
T ss_dssp ---CTTCSEEECCSSCCSS-CCCCCT--TCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCS---------------
T ss_pred ---cCCCCEEEccCCcCCc-cccccC--CCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCC---------------
Confidence 2567777777777664 444321 266777777766642 111 157777777777663
Q ss_pred ccCCcccccCCCCCeeeccCCcCCCCCCCCCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccc
Q 043685 251 GFLPPFVGNLTNLERLGLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRN 330 (620)
Q Consensus 251 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 330 (620)
+ +| .+..+++|++|++++|.+.+ +|... .+|++|++++|.+++ ++ .+..+++|++|++++|.+.+ +|..
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~--~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~--- 213 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP--PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL--- 213 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc--ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---
Confidence 2 33 46777777777777777664 33222 366666666666665 23 45666666666666666653 3322
Q ss_pred cCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEe
Q 043685 331 CTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALD 410 (620)
Q Consensus 331 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 410 (620)
.++|++|++++|.+... + .+..+++|++|++++|++.+. +. .+++|++|++++|.+.+ +|.. +++|++|+
T Consensus 214 ~~~L~~L~l~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ 283 (454)
T 1jl5_A 214 PLSLESIVAGNNILEEL-P-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLD 283 (454)
T ss_dssp CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred cCcccEEECcCCcCCcc-c-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-cCcc---cCcCCEEE
Confidence 14566666666666532 2 255666666666666666542 22 13566666666666653 2322 25566666
Q ss_pred cCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcc
Q 043685 411 LSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQ 490 (620)
Q Consensus 411 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 490 (620)
+++|++++. +. ..++|++|++++|++++ ++. ..++|++|++++|.+++ +|.. +++|++|++++|.+.
T Consensus 284 ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~- 350 (454)
T 1jl5_A 284 VSENIFSGL-SE---LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA- 350 (454)
T ss_dssp CCSSCCSEE-SC---CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-
T ss_pred CcCCccCcc-cC---cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-
Confidence 666665531 11 11456666666666552 111 11356666666666553 2221 345666666666554
Q ss_pred cchhHhhhccCCCEEeCCCCcCcc--ccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCcc--CCCC
Q 043685 491 ELPKELEKLVQLSLLDASHNLFGG--EIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQG--PVPN 566 (620)
Q Consensus 491 ~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~ 566 (620)
.+|. .+++|+.|++++|++++ .+|..+. .| +.|.+.+.+|.. +++|++|++++|++++ .+|
T Consensus 351 ~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~------~L--~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP- 415 (454)
T 1jl5_A 351 EVPE---LPQNLKQLHVEYNPLREFPDIPESVE------DL--RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP- 415 (454)
T ss_dssp CCCC---CCTTCCEEECCSSCCSSCCCCCTTCC------EE--ECCC---------------------------------
T ss_pred cccc---hhhhccEEECCCCCCCcCCCChHHHH------hh--hhcccccccccc---cCcCCEEECCCCcCCccccch-
Confidence 2333 34556666666666554 2333222 12 223333333332 3789999999999987 444
Q ss_pred CcccCCCCccccCCCCCCCC
Q 043685 567 STAFRNAPVEALEGNKGLCG 586 (620)
Q Consensus 567 ~~~~~~l~~~~l~~Np~~C~ 586 (620)
.+++.+.+.+|.+.|.
T Consensus 416 ----~sl~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 416 ----ESVEDLRMNSERVVDP 431 (454)
T ss_dssp --------------------
T ss_pred ----hhHhheeCcCcccCCc
Confidence 4566677777766553
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.9e-36 Score=314.24 Aligned_cols=407 Identities=24% Similarity=0.261 Sum_probs=184.2
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCCEEECCCCCCCCcCCccccCCCCC-------------CEEECCCCCCcccCC
Q 043685 33 GRVINISLRNTGLSGTLRDLSFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKL-------------SYISLDSNQLFGKIP 99 (620)
Q Consensus 33 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~i~~~~~~~l~~l~~L-------------~~L~L~~~~i~~~~~ 99 (620)
.++++|+++++.+ +.+ +..++++++|++|++++|.+.+..|..++++++| ++|++++|.+++ +|
T Consensus 11 ~~L~~L~l~~n~l-~~i-P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred ccchhhhcccCch-hhC-ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 4677777777777 565 5667777777777777777777777777777654 666666666553 33
Q ss_pred CCCCCCcEEEccCCcCCCcCcccccCCCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCCCCCcCCCCcccCCCCCCcE
Q 043685 100 LELSSIEELFLYSNHLNESFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSNNQLGGSIPLSFGNLSNLAR 179 (620)
Q Consensus 100 ~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~ 179 (620)
...++|++|++++|.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|.+.+ +| .++.+++|++
T Consensus 88 ~~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 88 ELPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKI 157 (454)
T ss_dssp SCCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCE
T ss_pred CCcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCE
Confidence 334556666666665554 3322 2455666666555552 2211 1455555555555553 33 3555555555
Q ss_pred EEcccccccccCCCCCCceeecEEEccCCccccccCCCCCCCCCCCEEEccCCcCCCCCCCccccccccccccCCccccc
Q 043685 180 LCLYKNLLIGSIPSSLGNLKLIDLKLSSNQLTGYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGN 259 (620)
Q Consensus 180 L~l~~n~~~~~~~~~l~~l~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~ 259 (620)
|++++|.+.+ +|..+ .+|++|++++|.++ + ++ .+..
T Consensus 158 L~l~~N~l~~-lp~~~--------------------------~~L~~L~L~~n~l~---------------~-l~-~~~~ 193 (454)
T 1jl5_A 158 IDVDNNSLKK-LPDLP--------------------------PSLEFIAAGNNQLE---------------E-LP-ELQN 193 (454)
T ss_dssp EECCSSCCSC-CCCCC--------------------------TTCCEEECCSSCCS---------------S-CC-CCTT
T ss_pred EECCCCcCcc-cCCCc--------------------------ccccEEECcCCcCC---------------c-Cc-cccC
Confidence 5555555442 22221 35555555555542 1 22 3455
Q ss_pred CCCCCeeeccCCcCCCCCCCCCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCceeec
Q 043685 260 LTNLERLGLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRL 339 (620)
Q Consensus 260 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 339 (620)
+++|++|++++|.+.+ ++... . +|++|++++|.+. .+| .+..+++|++|++
T Consensus 194 l~~L~~L~l~~N~l~~-l~~~~--~------------------------~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l 244 (454)
T 1jl5_A 194 LPFLTAIYADNNSLKK-LPDLP--L------------------------SLESIVAGNNILE-ELP-ELQNLPFLTTIYA 244 (454)
T ss_dssp CTTCCEEECCSSCCSS-CCCCC--T------------------------TCCEEECCSSCCS-SCC-CCTTCTTCCEEEC
T ss_pred CCCCCEEECCCCcCCc-CCCCc--C------------------------cccEEECcCCcCC-ccc-ccCCCCCCCEEEC
Confidence 5555666665555542 11110 1 3333333333333 333 2444555555555
Q ss_pred CCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeeccc
Q 043685 340 DGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGD 419 (620)
Q Consensus 340 ~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 419 (620)
++|++.+... .+++|+.|++++|.+.+. +.. +++|++|++++|.+++. +.. .++|++|++++|++++.
T Consensus 245 ~~N~l~~l~~----~~~~L~~L~l~~N~l~~l-~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i 312 (454)
T 1jl5_A 245 DNNLLKTLPD----LPPSLEALNVRDNYLTDL-PEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSL 312 (454)
T ss_dssp CSSCCSSCCS----CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE
T ss_pred CCCcCCcccc----cccccCEEECCCCccccc-Ccc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcc
Confidence 5555553221 135666666666666642 221 35677777777766642 111 25677777777777642
Q ss_pred CChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcc--cchhHhh
Q 043685 420 IPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQ--ELPKELE 497 (620)
Q Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~ 497 (620)
+. ..++|++|++++|++++ +|.. +++|++|++++|.+++ +|. .+++|++|++++|.+.+ .+|..+.
T Consensus 313 -~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~ 380 (454)
T 1jl5_A 313 -CD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVE 380 (454)
T ss_dssp -CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred -cC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHH
Confidence 11 12477788888887774 4433 4678888888888774 333 46778888888888876 4554433
Q ss_pred hccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCcc--ccCccccCCCCCCEEEccCCcCccCCCC
Q 043685 498 KLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSG--SIPNCFDGMHGLSVIDISDNQLQGPVPN 566 (620)
Q Consensus 498 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 566 (620)
.|. .|.+.+.+|. .+++|+.|++++|++++ .+| .+++.|.+.+|.+.+..+.
T Consensus 381 ------~L~--~n~~~~~i~~---~~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 381 ------DLR--MNSHLAEVPE---LPQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPYEF 434 (454)
T ss_dssp ------EEE--CCC---------------------------------------------------------
T ss_pred ------hhh--hccccccccc---ccCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCcccc
Confidence 232 3555555554 25788899999998876 333 3577778888888876653
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.1e-36 Score=315.89 Aligned_cols=327 Identities=15% Similarity=0.115 Sum_probs=267.3
Q ss_pred CCCeeeccCCcCCCCCCCCCCC-CCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCceeecC
Q 043685 262 NLERLGLMDNHLSGSIPPSLGN-STLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLD 340 (620)
Q Consensus 262 ~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 340 (620)
+++.|++++|.+.+..+..+.. ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..|.++++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 4455555555554443444443 455555555555555666777788888888888888876666677888999999999
Q ss_pred CCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccC
Q 043685 341 GNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDI 420 (620)
Q Consensus 341 ~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 420 (620)
+|.+.+..+..+..+++|++|++++|.+.+..+..|.++++|++|++++|.++...+..+..+++|+.|++++|.+.+..
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 192 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence 99988888888889999999999999998888888889999999999999988666667888999999999999998877
Q ss_pred ChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhcc
Q 043685 421 PKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLV 500 (620)
Q Consensus 421 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 500 (620)
+..+..+++|++|++++|...+.++.......+|++|++++|.++...+..+..+++|++|++++|.+.+..+..|..++
T Consensus 193 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (477)
T 2id5_A 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272 (477)
T ss_dssp TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT
T ss_pred hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc
Confidence 77888999999999999887767776666677999999999999877777889999999999999999887777889999
Q ss_pred CCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCCcccCCCCccccCC
Q 043685 501 QLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEG 580 (620)
Q Consensus 501 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~ 580 (620)
+|+.|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|++.+..+..+.+.......+.+
T Consensus 273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~ 352 (477)
T 2id5_A 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNR 352 (477)
T ss_dssp TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTT
T ss_pred cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCc
Confidence 99999999999998889999999999999999999998888888999999999999999987665444444555567788
Q ss_pred CCCCCCCC
Q 043685 581 NKGLCGGV 588 (620)
Q Consensus 581 Np~~C~~~ 588 (620)
+...|..|
T Consensus 353 ~~~~C~~p 360 (477)
T 2id5_A 353 QQPTCATP 360 (477)
T ss_dssp CCCBEEES
T ss_pred cCceeCCc
Confidence 88888654
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-35 Score=312.82 Aligned_cols=323 Identities=19% Similarity=0.170 Sum_probs=291.6
Q ss_pred CeeeccCCcCCCCCCCCCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCceeecCCCc
Q 043685 264 ERLGLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNN 343 (620)
Q Consensus 264 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 343 (620)
+.++.+++.+. .+|..+. ..++.|++++|.+++..+..+..+++|++|++++|.+.+..|..|.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~-~ip~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP-TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcC-cCCCCCC-CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 45666666665 4444332 689999999999999989999999999999999999998889999999999999999999
Q ss_pred cccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChh
Q 043685 344 LTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKE 423 (620)
Q Consensus 344 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 423 (620)
+.......|..+++|++|++++|.+.+..+..|.++++|++|++++|.+....+..|..+++|++|++++|.+++..+..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 99888888999999999999999999888999999999999999999999888888999999999999999999777777
Q ss_pred hhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCC
Q 043685 424 LGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLS 503 (620)
Q Consensus 424 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 503 (620)
+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+..+.......+|++|++++|.+....+..+..+++|+
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccC
Confidence 99999999999999999977777899999999999999988777776666677999999999999876667899999999
Q ss_pred EEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCC-cccCCCCccccCCCC
Q 043685 504 LLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNK 582 (620)
Q Consensus 504 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~l~~Np 582 (620)
.|++++|++++..+..|..+++|+.|++++|++++..|..|..+++|++|++++|++++..+.. ..+++++.+++.+||
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred eeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 9999999999888889999999999999999999999999999999999999999999766644 347889999999999
Q ss_pred CCCCCC
Q 043685 583 GLCGGV 588 (620)
Q Consensus 583 ~~C~~~ 588 (620)
|.|+|.
T Consensus 332 l~c~c~ 337 (477)
T 2id5_A 332 LACDCR 337 (477)
T ss_dssp EECSGG
T ss_pred ccCccc
Confidence 999874
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.4e-34 Score=304.37 Aligned_cols=216 Identities=25% Similarity=0.354 Sum_probs=141.1
Q ss_pred ccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEE
Q 043685 330 NCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQAL 409 (620)
Q Consensus 330 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 409 (620)
++++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|++|
T Consensus 175 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 248 (466)
T 1o6v_A 175 NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDL 248 (466)
T ss_dssp TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred cCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEE
Confidence 344444444444444332 224455566666666665554433 44566666666666666532 245566677777
Q ss_pred ecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCc
Q 043685 410 DLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFV 489 (620)
Q Consensus 410 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 489 (620)
++++|.+.+..+ +..+++|++|++++|++.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 249 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~ 322 (466)
T 1o6v_A 249 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 322 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCS
T ss_pred ECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCC
Confidence 777776664433 6667777777777777764322 6667777777777777765543 667777888888888776
Q ss_pred ccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccC
Q 043685 490 QELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGP 563 (620)
Q Consensus 490 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 563 (620)
+..| +..+++|+.|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 323 ~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 323 DISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred Cchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 6544 66778888888888877754 357777888888888888877666 67778888888888888763
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6e-34 Score=299.66 Aligned_cols=193 Identities=28% Similarity=0.387 Sum_probs=119.6
Q ss_pred ccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEE
Q 043685 330 NCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQAL 409 (620)
Q Consensus 330 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 409 (620)
.+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|++|
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 270 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 270 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEE
Confidence 34444444444444443322 34455555555555555432 234555666666666666654332 5566666666
Q ss_pred ecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCc
Q 043685 410 DLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFV 489 (620)
Q Consensus 410 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 489 (620)
++++|.+.+..+ +..+++|++|++++|++.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+.
T Consensus 271 ~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 271 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC
Confidence 666666654322 5566667777777776664322 5667777777777777766544 566777777777777775
Q ss_pred ccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCcc
Q 043685 490 QELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSG 538 (620)
Q Consensus 490 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 538 (620)
+. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 345 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 345 DV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred Cc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 54 356777777777777777776665 6777777888888777765
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.4e-33 Score=294.35 Aligned_cols=166 Identities=20% Similarity=0.178 Sum_probs=106.0
Q ss_pred CCCCCCCCCEEECCCCCCCCcCCccccCCCCCCEEECCCCCCcccCCCCCCCCcEEEccCCcCCCcCcccccCCCCCCEE
Q 043685 53 SFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPLELSSIEELFLYSNHLNESFPPFLGNLSNIVRL 132 (620)
Q Consensus 53 ~~~~~~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L 132 (620)
.++++++|++|++++|.+++. | ++..+++|++|++++|.+.+.....+++|++|++++|.+++. + ++++++|++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L 111 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL 111 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence 556778888888888888754 4 678888888888888887765445566777777777776653 2 6777777777
Q ss_pred EccCCcCCcccCccCCCCCCCCEEeCCCCCCcCCCCcccCCCCCCcEEEcccccccccCCCCCCcee-ecEEEccCCccc
Q 043685 133 YINNNSLSSSIPTNIGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLYKNLLIGSIPSSLGNLK-LIDLKLSSNQLT 211 (620)
Q Consensus 133 ~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-L~~L~l~~~~~~ 211 (620)
++++|.+++ ++ ++.+++|++|++++|.+.+. .++.+++|++|++++|...+.+ .+..++ |++|++++|.++
T Consensus 112 ~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 112 NCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp ECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence 777777764 32 67777777777777777653 2666777777777766443322 233333 555555555544
Q ss_pred cccCCCCCCCCCCCEEEccCCcC
Q 043685 212 GYIPYSLGNVTSLSSLLLAKNKL 234 (620)
Q Consensus 212 ~~~~~~l~~l~~L~~L~l~~n~~ 234 (620)
+. + +..+++|+.|++++|.+
T Consensus 184 ~l-~--l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 184 EL-D--VSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp CC-C--CTTCTTCCEEECCSSCC
T ss_pred ee-c--cccCCCCCEEECcCCcC
Confidence 32 1 44444555555554444
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.4e-33 Score=294.20 Aligned_cols=352 Identities=20% Similarity=0.175 Sum_probs=176.6
Q ss_pred CCCcEEEccCCcCCCcCcccccCCCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCCCCCcCCCCcccCCCCCCcEEEc
Q 043685 103 SSIEELFLYSNHLNESFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCL 182 (620)
Q Consensus 103 ~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 182 (620)
++|++|++++|.+++. | .++.+++|++|++++|.+++. + ++.+++|++|++++|.+.+. + ++.+++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 4555555555555442 2 355555555555555555432 2 45555555555555555532 1 445555555555
Q ss_pred ccccccccCCCCCCceeecEEEccCCccccccCCCCCCCCCCCEEEccCCcCCCCCCCccccccccccccCCcccccCCC
Q 043685 183 YKNLLIGSIPSSLGNLKLIDLKLSSNQLTGYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTN 262 (620)
Q Consensus 183 ~~n~~~~~~~~~l~~l~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~~ 262 (620)
++|.+. +. + +..+++|++|++++|+++ +. .+..+++
T Consensus 114 ~~N~l~-----------------------~l-~--~~~l~~L~~L~l~~N~l~---------------~l---~l~~l~~ 149 (457)
T 3bz5_A 114 DTNKLT-----------------------KL-D--VSQNPLLTYLNCARNTLT---------------EI---DVSHNTQ 149 (457)
T ss_dssp CSSCCS-----------------------CC-C--CTTCTTCCEEECTTSCCS---------------CC---CCTTCTT
T ss_pred CCCcCC-----------------------ee-c--CCCCCcCCEEECCCCccc---------------ee---ccccCCc
Confidence 555444 32 1 444455555555554442 11 1334444
Q ss_pred CCeeeccCCcCCCCCCCCCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCceeecCCC
Q 043685 263 LERLGLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGN 342 (620)
Q Consensus 263 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 342 (620)
|++|++++|...+.. .....++|+.|++++|.+++. + +..+++|+.|++++|.+.+. .+..+++|+.|++++|
T Consensus 150 L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 150 LTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSN 222 (457)
T ss_dssp CCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSS
T ss_pred CCEEECCCCCccccc-ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCC
Confidence 555555544322211 000113333333333333321 1 33344444455544444432 1444455555555555
Q ss_pred ccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCCh
Q 043685 343 NLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPK 422 (620)
Q Consensus 343 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 422 (620)
++++.. +..+++|+.|++++|.+++.. +..+++|+.|+++.| +|++|++++|...+.+|
T Consensus 223 ~l~~ip---~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~- 281 (457)
T 3bz5_A 223 KLTEID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ- 281 (457)
T ss_dssp CCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE-
T ss_pred cccccC---ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc-
Confidence 554421 444455555555555554432 223444444444432 23444455554444333
Q ss_pred hhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCC
Q 043685 423 ELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQL 502 (620)
Q Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 502 (620)
+..+++|+.|++++|+..+.+|. ..++|+.|++++| ++|++|++++|.+++. + +..+++|
T Consensus 282 -~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L 341 (457)
T 3bz5_A 282 -AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKL 341 (457)
T ss_dssp -CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTC
T ss_pred -ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcC
Confidence 34456666666666655544442 2334444444433 5677777777777653 2 6677777
Q ss_pred CEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCC
Q 043685 503 SLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNS 567 (620)
Q Consensus 503 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 567 (620)
+.|++++|++++ ++.|..|++++|.+.+. ..+..|+.+++++|.+++.+|..
T Consensus 342 ~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 342 KSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp SEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred cEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 777777777774 24555666777777654 23456777888888888888753
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.6e-34 Score=282.06 Aligned_cols=259 Identities=25% Similarity=0.428 Sum_probs=229.7
Q ss_pred CCCceeecCCCcccc--ccCcccCCCCCCCEEECCC-CcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCE
Q 043685 332 TSLIRVRLDGNNLTG--NISEALGIYPNLTFIDLSR-NNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQA 408 (620)
Q Consensus 332 ~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 408 (620)
.+++.|+++++.+.+ ..+..+..+++|++|++++ |.+.+.+|..+.++++|++|++++|.+.+..|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467777777777776 6667788888888888884 7888888888888889999999999888778888888999999
Q ss_pred EecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCC-CCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCc
Q 043685 409 LDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLI-KLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQ 487 (620)
Q Consensus 409 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~ 487 (620)
|++++|.+++..|..+..+++|++|++++|++++.+|..+..++ +|++|++++|.+++..|..+..++ |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999999888888899999999999999999888888888887 899999999999888888888887 9999999999
Q ss_pred CcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCC
Q 043685 488 FVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNS 567 (620)
Q Consensus 488 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 567 (620)
+.+..|..+..+++|+.|++++|++++..+. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9888888999999999999999999976665 888999999999999999999999999999999999999999999988
Q ss_pred cccCCCCccccCCCCCCCCCCCCCCCC
Q 043685 568 TAFRNAPVEALEGNKGLCGGVKGMQPC 594 (620)
Q Consensus 568 ~~~~~l~~~~l~~Np~~C~~~~~~~~c 594 (620)
..+++++.+++.+||+.||.|.. .|
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~p~~--~C 312 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGSPLP--AC 312 (313)
T ss_dssp TTGGGSCGGGTCSSSEEESTTSS--CC
T ss_pred ccccccChHHhcCCCCccCCCCC--CC
Confidence 88999999999999999997653 56
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-32 Score=283.39 Aligned_cols=314 Identities=22% Similarity=0.221 Sum_probs=215.6
Q ss_pred ccccCCCCCeeeccCCcCCCCCCCCCCC-CCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCC
Q 043685 256 FVGNLTNLERLGLMDNHLSGSIPPSLGN-STLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSL 334 (620)
Q Consensus 256 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 334 (620)
.+..+++|++|++++|.+.+..+..+.. ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..|.++++|
T Consensus 64 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 143 (390)
T 3o6n_A 64 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143 (390)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCC
Confidence 3455555555555555555433334433 455555555555555555566667777777777777764444445677778
Q ss_pred ceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCC
Q 043685 335 IRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLN 414 (620)
Q Consensus 335 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 414 (620)
++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+.|++++|.+.. +...++|++|++++|
T Consensus 144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n 215 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHN 215 (390)
T ss_dssp CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSS
T ss_pred cEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCC
Confidence 8888887777777667777778888888888777654 24556778888888877653 233457888888888
Q ss_pred eecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchh
Q 043685 415 QIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPK 494 (620)
Q Consensus 415 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 494 (620)
.+... +. ...++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ ++.
T Consensus 216 ~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~ 289 (390)
T 3o6n_A 216 SINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNL 289 (390)
T ss_dssp CCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EEC
T ss_pred eeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCc
Confidence 77644 22 2246788888888887743 456778888888888888887777778888888888888888854 444
Q ss_pred HhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCCcccCCCC
Q 043685 495 ELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNSTAFRNAP 574 (620)
Q Consensus 495 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~ 574 (620)
.+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++.. + +..+++|+.|++++|++.+.. ....+..+.
T Consensus 290 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~-~~~~~~~~~ 364 (390)
T 3o6n_A 290 YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS-LRALFRNVA 364 (390)
T ss_dssp SSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH-HHHHTTTCC
T ss_pred ccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchh-HHHHHHHHH
Confidence 5567788888888888887 4455677778888888888888754 2 566778888888888887532 223355666
Q ss_pred ccccCCCCCCCCCC
Q 043685 575 VEALEGNKGLCGGV 588 (620)
Q Consensus 575 ~~~l~~Np~~C~~~ 588 (620)
...+.+++..|+++
T Consensus 365 ~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 365 RPAVDDADQHCKID 378 (390)
T ss_dssp TTTBCCCCSCCCTT
T ss_pred hhcccccCceeccc
Confidence 66677787777754
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=8.9e-33 Score=284.07 Aligned_cols=313 Identities=17% Similarity=0.166 Sum_probs=272.5
Q ss_pred cCCCCCeeeccCCcCCCCCCCCCCC-CCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCcee
Q 043685 259 NLTNLERLGLMDNHLSGSIPPSLGN-STLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRV 337 (620)
Q Consensus 259 ~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 337 (620)
.+++++.++++++.+....+..+.. ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 4578899999999887443333444 899999999999998888899999999999999999998888889999999999
Q ss_pred ecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeec
Q 043685 338 RLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIV 417 (620)
Q Consensus 338 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 417 (620)
++++|.+.......|..+++|++|++++|.+.+..+..+.++++|++|++++|.++.. .+..+++|++|++++|.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 9999999987777789999999999999999988888899999999999999999854 3566899999999999887
Q ss_pred ccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhh
Q 043685 418 GDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELE 497 (620)
Q Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 497 (620)
+ +...++|++|++++|.+... +.. ..++|++|++++|.+++. ..+..+++|++|++++|.+.+..|..+.
T Consensus 200 ~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 200 T-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp E-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred c-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 4 33456899999999999843 433 357999999999999865 5688999999999999999988889999
Q ss_pred hccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCCcccCCCCccc
Q 043685 498 KLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEA 577 (620)
Q Consensus 498 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~ 577 (620)
.+++|+.|++++|++++ .+..+..+++|+.|++++|+++ .+|..+..+++|++|++++|+++... ...+++++.++
T Consensus 270 ~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~ 345 (390)
T 3o6n_A 270 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLT 345 (390)
T ss_dssp TCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEE
T ss_pred ccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC--chhhccCCEEE
Confidence 99999999999999995 4566678999999999999998 45666788999999999999998653 45688999999
Q ss_pred cCCCCCCCCCC
Q 043685 578 LEGNKGLCGGV 588 (620)
Q Consensus 578 l~~Np~~C~~~ 588 (620)
+.+|||.|++.
T Consensus 346 l~~N~~~~~~~ 356 (390)
T 3o6n_A 346 LSHNDWDCNSL 356 (390)
T ss_dssp CCSSCEEHHHH
T ss_pred cCCCCccchhH
Confidence 99999999753
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=9.3e-32 Score=291.53 Aligned_cols=314 Identities=22% Similarity=0.209 Sum_probs=231.2
Q ss_pred cccCCCCCeeeccCCcCCCCCCCCCCC-CCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCc
Q 043685 257 VGNLTNLERLGLMDNHLSGSIPPSLGN-STLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLI 335 (620)
Q Consensus 257 l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 335 (620)
+..+++|+.|++++|.+.+..+..+.. ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..|.++++|+
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence 444444444444444444333333333 4455555555555555556667777777777777777755555567788888
Q ss_pred eeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCe
Q 043685 336 RVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQ 415 (620)
Q Consensus 336 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 415 (620)
+|++++|.+.+..+..+..+++|+.|++++|.+++.. +..+++|+.|++++|.+.+ +...++|++|++++|.
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~ 222 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNS 222 (597)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSC
T ss_pred EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCc
Confidence 8888888888777777888888888888888877642 4557788888888887763 3345678888888888
Q ss_pred ecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhH
Q 043685 416 IVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKE 495 (620)
Q Consensus 416 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 495 (620)
+....+. ..++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..|..+++|+.|++++|.+.+ +|..
T Consensus 223 l~~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~ 296 (597)
T 3oja_B 223 INVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLY 296 (597)
T ss_dssp CCEEECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECS
T ss_pred ccccccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcc
Confidence 8744332 236789999999988853 567888999999999999988888889999999999999999865 4556
Q ss_pred hhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCCcccCCCCc
Q 043685 496 LEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNSTAFRNAPV 575 (620)
Q Consensus 496 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~ 575 (620)
+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++.. +..+++|+.|++++|++.+... ...+..+..
T Consensus 297 ~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~ 371 (597)
T 3oja_B 297 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL-RALFRNVAR 371 (597)
T ss_dssp SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCT
T ss_pred cccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhH-HHHHHHHhh
Confidence 677899999999999998 56667788899999999999988652 5677899999999999986532 234666777
Q ss_pred cccCCCCCCCCCCC
Q 043685 576 EALEGNKGLCGGVK 589 (620)
Q Consensus 576 ~~l~~Np~~C~~~~ 589 (620)
..+.+++..|+.+.
T Consensus 372 ~~~~~~~~~C~~~~ 385 (597)
T 3oja_B 372 PAVDDADQHCKIDY 385 (597)
T ss_dssp TTBCCCCCCCCTTC
T ss_pred hccccccccCCcch
Confidence 77889999998643
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.2e-31 Score=266.59 Aligned_cols=306 Identities=23% Similarity=0.322 Sum_probs=179.9
Q ss_pred CCCCCCCCEEEccCCcCCCCCCCccccccccccccCCcccccCCCCCeeeccCCcCCCCCCCCCCC-CCcCeEEecCCcc
Q 043685 218 LGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLERLGLMDNHLSGSIPPSLGN-STLTWLTFSLNHF 296 (620)
Q Consensus 218 l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~ 296 (620)
+..+++|++|+++++.+. .+ ..+..+++|++|++++|.+.+..+ +.. ++|+.|++++|.+
T Consensus 40 ~~~l~~L~~L~l~~~~i~----------------~~-~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i 100 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA----------------SI-QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI 100 (347)
T ss_dssp HHHHTTCSEEECCSSCCC----------------CC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred chhcccccEEEEeCCccc----------------cc-hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcc
Confidence 345677888888877763 12 236677888888888887764322 333 6666666666655
Q ss_pred cccCCCCccCCCCccEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccc
Q 043685 297 TGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNW 376 (620)
Q Consensus 297 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 376 (620)
.+. ..+..+++|++|++++|.+.+. +. +..+++|+.|++++|...... ..+..+++|++|++++|.+.+..+ +
T Consensus 101 ~~~--~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~ 173 (347)
T 4fmz_A 101 TDI--SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--I 173 (347)
T ss_dssp CCC--GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--G
T ss_pred cCc--hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--h
Confidence 542 2455666666666666666532 22 556666666666666443222 225566666666666666554433 5
Q ss_pred cCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCE
Q 043685 377 GKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEY 456 (620)
Q Consensus 377 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 456 (620)
..+++|++|++++|.+.+..+ +..+++|+++++++|.+.+..+ +..+++|++|++++|++++. +. +..+++|++
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~ 247 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTW 247 (347)
T ss_dssp GGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCE
T ss_pred ccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCE
Confidence 556666666666666653322 5556666666666666653322 55666666666666666532 22 556666666
Q ss_pred EEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcC
Q 043685 457 LDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNL 536 (620)
Q Consensus 457 L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 536 (620)
|++++|.+++. ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|++++..+..+..+++|+.|++++|++
T Consensus 248 L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 248 LEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred EECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence 66666666543 3455666666666666666443 2355666666666666666666666666666666666666666
Q ss_pred ccccCccccCCCCCCEEEccCCcCc
Q 043685 537 SGSIPNCFDGMHGLSVIDISDNQLQ 561 (620)
Q Consensus 537 ~~~~~~~~~~l~~L~~L~l~~N~l~ 561 (620)
++..| +..+++|++|++++|+++
T Consensus 324 ~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 324 TDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCGG--GGGCTTCSEESSSCC---
T ss_pred ccccC--hhhhhccceeehhhhccc
Confidence 65544 555666666666666654
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.6e-32 Score=292.71 Aligned_cols=312 Identities=17% Similarity=0.173 Sum_probs=273.7
Q ss_pred cCCCCCeeeccCCcCCCCCCCCCCC-CCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCcee
Q 043685 259 NLTNLERLGLMDNHLSGSIPPSLGN-STLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRV 337 (620)
Q Consensus 259 ~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 337 (620)
.+.+++.++++++.+....+..+.. ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|..|.++++|+.|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 3578899999999887544444444 899999999999999888899999999999999999998888889999999999
Q ss_pred ecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeec
Q 043685 338 RLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIV 417 (620)
Q Consensus 338 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 417 (620)
++++|.+...++..|..+++|+.|++++|.+.+..+..|.++++|++|++++|.+.+. .+..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc
Confidence 9999999988888889999999999999999999898999999999999999999854 2566889999999999887
Q ss_pred ccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhh
Q 043685 418 GDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELE 497 (620)
Q Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 497 (620)
+ +...++|+.|++++|.+.. ++..+ .++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..|..|.
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~-~~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCE-EECSC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred c-----ccCCchhheeeccCCcccc-ccccc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 4 3455689999999999984 33332 36899999999999864 6788999999999999999998899999
Q ss_pred hccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCCcccCCCCccc
Q 043685 498 KLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEA 577 (620)
Q Consensus 498 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~ 577 (620)
.+++|+.|++++|++++ +|..+..+++|+.|++++|.++ .+|..+..+++|++|++++|++++.. ...+++++.++
T Consensus 276 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~ 351 (597)
T 3oja_B 276 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLT 351 (597)
T ss_dssp TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEE
T ss_pred CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEE
Confidence 99999999999999996 4666778999999999999998 56777888999999999999998663 34678999999
Q ss_pred cCCCCCCCCC
Q 043685 578 LEGNKGLCGG 587 (620)
Q Consensus 578 l~~Np~~C~~ 587 (620)
+.+|||.|++
T Consensus 352 l~~N~~~~~~ 361 (597)
T 3oja_B 352 LSHNDWDCNS 361 (597)
T ss_dssp CCSSCEEHHH
T ss_pred eeCCCCCChh
Confidence 9999999975
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=6.3e-31 Score=265.94 Aligned_cols=307 Identities=21% Similarity=0.308 Sum_probs=263.2
Q ss_pred ccccCCCCCeeeccCCcCCCCCCCCCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCc
Q 043685 256 FVGNLTNLERLGLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLI 335 (620)
Q Consensus 256 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 335 (620)
.+..++++++|+++++.+.. ++.....++|+.|++++|.+++..+ +..+++|++|++++|.+.+ + ..+..+++|+
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~-~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~ 113 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS-IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLR 113 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC-CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred cchhcccccEEEEeCCcccc-chhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCC
Confidence 34578999999999999874 3432333999999999999986544 8899999999999999875 3 3688999999
Q ss_pred eeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCe
Q 043685 336 RVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQ 415 (620)
Q Consensus 336 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 415 (620)
+|++++|.+.+... +..+++|+.|++++|......+ .+..+++|++|++++|.+....+ +..+++|++|++++|.
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 99999999986544 8899999999999996554443 48899999999999999885443 7889999999999999
Q ss_pred ecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhH
Q 043685 416 IVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKE 495 (620)
Q Consensus 416 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 495 (620)
+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 260 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NA 260 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GG
T ss_pred cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hh
Confidence 985433 8899999999999999985433 7889999999999999986654 88999999999999999764 46
Q ss_pred hhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCCcccCCCCc
Q 043685 496 LEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNSTAFRNAPV 575 (620)
Q Consensus 496 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~ 575 (620)
+..+++|+.|++++|++++. ..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..| ...+++++.
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 337 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDS 337 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSE
T ss_pred HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccce
Confidence 88999999999999999965 468899999999999999998888999999999999999999998777 667899999
Q ss_pred cccCCCCC
Q 043685 576 EALEGNKG 583 (620)
Q Consensus 576 ~~l~~Np~ 583 (620)
+++.+|+.
T Consensus 338 L~l~~N~i 345 (347)
T 4fmz_A 338 ADFANQVI 345 (347)
T ss_dssp ESSSCC--
T ss_pred eehhhhcc
Confidence 99999975
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=1.8e-32 Score=272.14 Aligned_cols=265 Identities=29% Similarity=0.476 Sum_probs=193.5
Q ss_pred CCCCCcc--ccceeeCCC---CCEEEEEcCCCCCcc--ccCCCCCCCCCCCCEEECCC-CCCCCcCCccccCCCCCCEEE
Q 043685 17 SKISPCA--WYGISCNDA---GRVINISLRNTGLSG--TLRDLSFSSFPQLEYLDLSL-NGLFGTIPSQIGNLSKLSYIS 88 (620)
Q Consensus 17 ~~~~~c~--~~~~~~~~~---~~l~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~Ls~-~~i~~~~~~~l~~l~~L~~L~ 88 (620)
.+.+||. |.|+.|... ++|++|+++++.+.+ .+ +..+.++++|++|++++ |.+.+..|.+|.++++|++|+
T Consensus 29 ~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~-~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~ 107 (313)
T 1ogq_A 29 PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI-PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107 (313)
T ss_dssp TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC-CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEE
T ss_pred CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCccc-ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEE
Confidence 3568898 999999864 799999999999998 66 67889999999999995 888888899999999999999
Q ss_pred CCCCCCcccCCCCCCCCcEEEccCCcCCCcCcccccCCCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCCCCCcCCCC
Q 043685 89 LDSNQLFGKIPLELSSIEELFLYSNHLNESFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSNNQLGGSIP 168 (620)
Q Consensus 89 L~~~~i~~~~~~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 168 (620)
+++|.+. +..|..|.++++|++|++++|.+++..|..+..+++|++|++++|.+.+..|
T Consensus 108 Ls~n~l~---------------------~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 166 (313)
T 1ogq_A 108 ITHTNVS---------------------GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166 (313)
T ss_dssp EEEECCE---------------------EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred CcCCeeC---------------------CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC
Confidence 9888876 3456667777777777777777776677777777777777777777776667
Q ss_pred cccCCCC-CCcEEEcccccccccCCCCCCceeecEEEccCCccccccCCCCCCCCCCCEEEccCCcCCCCCCCccccccc
Q 043685 169 LSFGNLS-NLARLCLYKNLLIGSIPSSLGNLKLIDLKLSSNQLTGYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSIN 247 (620)
Q Consensus 169 ~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~ 247 (620)
..+..++ +|++|++++|.+.+..|..+..++|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 167 ~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~------------ 234 (313)
T 1ogq_A 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA------------ 234 (313)
T ss_dssp GGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC------------
T ss_pred HHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee------------
Confidence 7777776 777777777777766666666666777777777776666666667777777777776653
Q ss_pred cccccCCcccccCCCCCeeeccCCcCCCCCCCCCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCcccccccccc
Q 043685 248 QFRGFLPPFVGNLTNLERLGLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTS 327 (620)
Q Consensus 248 ~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 327 (620)
+..+ .+..+++|++|++++|.+. +..|..+..+++|++|++++|.+.+.+|..
T Consensus 235 ---~~~~-~~~~l~~L~~L~Ls~N~l~-----------------------~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 235 ---FDLG-KVGLSKNLNGLDLRNNRIY-----------------------GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp ---CBGG-GCCCCTTCCEEECCSSCCE-----------------------ECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ---eecC-cccccCCCCEEECcCCccc-----------------------CcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 1222 2444555555555555543 444555566666677777777766666665
Q ss_pred ccccCCCceeecCCCc
Q 043685 328 LRNCTSLIRVRLDGNN 343 (620)
Q Consensus 328 l~~l~~L~~L~l~~~~ 343 (620)
..+++|+.+++.+|.
T Consensus 288 -~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNK 302 (313)
T ss_dssp -TTGGGSCGGGTCSSS
T ss_pred -ccccccChHHhcCCC
Confidence 667778888887776
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.2e-30 Score=257.94 Aligned_cols=287 Identities=17% Similarity=0.192 Sum_probs=145.5
Q ss_pred CCCeeeccCCcCCCCCCCCCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCceeecCC
Q 043685 262 NLERLGLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDG 341 (620)
Q Consensus 262 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 341 (620)
+++.++++++.+. .+|..+. +.++.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+.++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS-PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCcc-ccCCCCC-CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 4666777776665 3333322 4555666666655555555555555566666655555555455555555555555555
Q ss_pred CccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCcccc--CCCccccCCCCCCEEecCCCeeccc
Q 043685 342 NNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITG--GIPREIGNSSQLQALDLSLNQIVGD 419 (620)
Q Consensus 342 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~ 419 (620)
|.+.......+ ++|++|++++|.+....+..|.++++|++|++++|.++. ..+..+..+ +|++|++++|.+++
T Consensus 112 n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 112 NHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 55553322221 455555555555554444445555555555555555532 333444444 55555555555543
Q ss_pred CChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhc
Q 043685 420 IPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKL 499 (620)
Q Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 499 (620)
+|..+. ++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .+|..+..+
T Consensus 187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 263 (332)
T 2ft3_A 187 IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL 263 (332)
T ss_dssp CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence 222221 45555555555555444444555555555555555555444444555555555555555553 344445555
Q ss_pred cCCCEEeCCCCcCccccchhccC------CCCCCEEECCCCcCc--cccCccccCCCCCCEEEccCC
Q 043685 500 VQLSLLDASHNLFGGEIPFQICS------LKSLEMLNLSHNNLS--GSIPNCFDGMHGLSVIDISDN 558 (620)
Q Consensus 500 ~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~N 558 (620)
++|+.|++++|++++..+..|.. ...|+.|++++|++. ...|..|..+++|+.+++++|
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 55555555555555444444432 234455555555544 334444555555555555544
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=6.3e-30 Score=256.51 Aligned_cols=228 Identities=21% Similarity=0.203 Sum_probs=105.2
Q ss_pred cccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCC
Q 043685 327 SLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQL 406 (620)
Q Consensus 327 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 406 (620)
.|.++++|++|++++|.+.+..+..+..+++|++|++++|.++.. +..+ .++|++|++++|.+....+..+..+++|
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L 147 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKM--PKTLQELRVHENEITKVRKSVFNGLNQM 147 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC-CSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTC
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc-Chhh--cccccEEECCCCcccccCHhHhcCCccc
Confidence 334444444444444444443344444444444444444444422 1111 1344444444444443333334444445
Q ss_pred CEEecCCCeecc--cCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCc
Q 043685 407 QALDLSLNQIVG--DIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLS 484 (620)
Q Consensus 407 ~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~ 484 (620)
++|++++|.+.. ..+..+..+++|++|++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|+++
T Consensus 148 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 224 (330)
T 1xku_A 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224 (330)
T ss_dssp CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECC
T ss_pred cEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 555554444432 33344444555555555555544 2332222 445555555555544444445555555555555
Q ss_pred CCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccC------CCCCCEEEccCC
Q 043685 485 NNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDG------MHGLSVIDISDN 558 (620)
Q Consensus 485 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~N 558 (620)
+|.+.+..+..+..+++|+.|++++|+++ .+|..+..+++|++|++++|+++++.+..|.. .+.++.+++++|
T Consensus 225 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N 303 (330)
T 1xku_A 225 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303 (330)
T ss_dssp SSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred CCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecC
Confidence 55554444444555555555555555555 34444455555555555555555444444322 144555555555
Q ss_pred cCc
Q 043685 559 QLQ 561 (620)
Q Consensus 559 ~l~ 561 (620)
++.
T Consensus 304 ~~~ 306 (330)
T 1xku_A 304 PVQ 306 (330)
T ss_dssp SSC
T ss_pred ccc
Confidence 543
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.3e-29 Score=249.74 Aligned_cols=289 Identities=19% Similarity=0.198 Sum_probs=175.0
Q ss_pred CCCeeeccCCcCCCCCCCCCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCceeecCC
Q 043685 262 NLERLGLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDG 341 (620)
Q Consensus 262 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 341 (620)
+++.++++++.+. .+|..+. +.++.|++++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCcc-ccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 5666777666665 3333222 4566666666666665555666666666666666666655566666666666666666
Q ss_pred CccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCcccc--CCCccccCCCCCCEEecCCCeeccc
Q 043685 342 NNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITG--GIPREIGNSSQLQALDLSLNQIVGD 419 (620)
Q Consensus 342 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~ 419 (620)
|.++...... .++|++|++++|.+.+..+..|.++++|++|++++|.+.. ..+..+..+++|++|++++|.++.
T Consensus 110 n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~- 185 (330)
T 1xku_A 110 NQLKELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT- 185 (330)
T ss_dssp SCCSBCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred CcCCccChhh---cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-
Confidence 6666433322 2566666666666665555556666666666666666642 344556666666666666666653
Q ss_pred CChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhc
Q 043685 420 IPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKL 499 (620)
Q Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 499 (620)
+|..+. ++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .+|..+..+
T Consensus 186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 262 (330)
T 1xku_A 186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH 262 (330)
T ss_dssp CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccC
Confidence 333222 56666666666666555566666666666666666666555556666666666666666664 455556666
Q ss_pred cCCCEEeCCCCcCccccchhccC------CCCCCEEECCCCcCcc--ccCccccCCCCCCEEEccCCc
Q 043685 500 VQLSLLDASHNLFGGEIPFQICS------LKSLEMLNLSHNNLSG--SIPNCFDGMHGLSVIDISDNQ 559 (620)
Q Consensus 500 ~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~N~ 559 (620)
++|+.|++++|++++..+..|.. .+.|+.|++++|++.. +.|..|..+.+++.+++++|+
T Consensus 263 ~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 66666666666666555555532 2556666666666643 344566666666666666663
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.2e-29 Score=250.67 Aligned_cols=287 Identities=18% Similarity=0.177 Sum_probs=189.2
Q ss_pred CCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEEC
Q 043685 284 STLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDL 363 (620)
Q Consensus 284 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 363 (620)
.+++.++++++.+. .+|..+ .++++.|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 35677777777766 334433 256777777777777666666777777777777777777666667777777777777
Q ss_pred CCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecc--cCChhhhccCCCcEEEccCCccc
Q 043685 364 SRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVG--DIPKELGKSNSLTKLILRGNQLT 441 (620)
Q Consensus 364 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~l~ 441 (620)
++|.+... +..+. ++|++|++++|.+....+..|..+++|++|++++|.++. ..+..+..+ +|++|++++|+++
T Consensus 110 ~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCCcc-Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 77777643 32222 677777777777775555567777777777777777742 445555555 7777777777776
Q ss_pred ccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhcc
Q 043685 442 GRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQIC 521 (620)
Q Consensus 442 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 521 (620)
.+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|+++ .+|..+.
T Consensus 186 -~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 186 -GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp -SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred -ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 3444433 56777777777777666666777777777777777776666666777777777777777777 5566677
Q ss_pred CCCCCCEEECCCCcCccccCccccCC------CCCCEEEccCCcCc--cCCCCC-cccCCCCccccCCC
Q 043685 522 SLKSLEMLNLSHNNLSGSIPNCFDGM------HGLSVIDISDNQLQ--GPVPNS-TAFRNAPVEALEGN 581 (620)
Q Consensus 522 ~l~~L~~L~l~~n~l~~~~~~~~~~l------~~L~~L~l~~N~l~--~~~~~~-~~~~~l~~~~l~~N 581 (620)
.+++|+.|++++|++++..+..|... ++|+.|++++|++. +..|.. ..+++++.+++.+|
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 77777777777777776655555432 45677777777765 333322 22555666666665
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=8.1e-33 Score=291.39 Aligned_cols=382 Identities=20% Similarity=0.168 Sum_probs=202.3
Q ss_pred CCCcEEEccCCcCCCcCcc-cccCCCCCCEEEccCCcCCcc----cCccCCCCCCCCEEeCCCCCCcCCCCccc-CCCC-
Q 043685 103 SSIEELFLYSNHLNESFPP-FLGNLSNIVRLYINNNSLSSS----IPTNIGNLKFLFELDLSNNQLGGSIPLSF-GNLS- 175 (620)
Q Consensus 103 ~~L~~L~ls~~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~~~l-~~l~- 175 (620)
++|++|+++++++++.... .+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4678888888887664333 367788888888888887642 34556677778888888777764323222 1232
Q ss_pred ---CCcEEEcccccccccCCCCCCceeecEEEccCCccccccCCCCCCCCCCCEEEccCCcCCCCCCCcccccccccccc
Q 043685 176 ---NLARLCLYKNLLIGSIPSSLGNLKLIDLKLSSNQLTGYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGF 252 (620)
Q Consensus 176 ---~L~~L~l~~n~~~~~~~~~l~~l~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~ 252 (620)
+|++|++++|.+..... ..++..+..+++|++|++++|.+. +.
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~-------------------~~l~~~l~~~~~L~~L~Ls~n~i~---------------~~ 128 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGC-------------------GVLSSTLRTLPTLQELHLSDNLLG---------------DA 128 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGH-------------------HHHHHHTTSCTTCCEEECCSSBCH---------------HH
T ss_pred CCCceeEEEccCCCCCHHHH-------------------HHHHHHHccCCceeEEECCCCcCc---------------hH
Confidence 45555555554442100 122334445555555555555542 11
Q ss_pred CCcc-----cccCCCCCeeeccCCcCCCCCCCCCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCcccccccccc
Q 043685 253 LPPF-----VGNLTNLERLGLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTS 327 (620)
Q Consensus 253 ~~~~-----l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 327 (620)
.+.. ....++|++|++++|.+.+... ..++..
T Consensus 129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-------------------------------------------~~l~~~ 165 (461)
T 1z7x_W 129 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASC-------------------------------------------EPLASV 165 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGH-------------------------------------------HHHHHH
T ss_pred HHHHHHHHHhcCCCcceEEECCCCCCCHHHH-------------------------------------------HHHHHH
Confidence 1111 1113345555554444331000 012233
Q ss_pred ccccCCCceeecCCCccccccCcccC-----CCCCCCEEECCCCcccCc----cCccccCCCCCcEEECCCCccccCC--
Q 043685 328 LRNCTSLIRVRLDGNNLTGNISEALG-----IYPNLTFIDLSRNNFYGE----ISSNWGKCPKLGTLNVSMNNITGGI-- 396 (620)
Q Consensus 328 l~~l~~L~~L~l~~~~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~-- 396 (620)
+..+++|++|++++|.+.......+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 34445555555555555432222221 244666666666665543 2344445666666666666654321
Q ss_pred ---CccccCCCCCCEEecCCCeeccc----CChhhhccCCCcEEEccCCcccccCCcccc-----CCCCCCEEEccCCcC
Q 043685 397 ---PREIGNSSQLQALDLSLNQIVGD----IPKELGKSNSLTKLILRGNQLTGRLPTEIG-----SLIKLEYLDFSANRF 464 (620)
Q Consensus 397 ---~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~ls~n~l 464 (620)
+..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 11223456666666666666542 344455566666666666666532222111 224667777777766
Q ss_pred Ccc----hhhhhhCCCCCCEecCcCCcCcccchhHhhh-----ccCCCEEeCCCCcCcc----ccchhccCCCCCCEEEC
Q 043685 465 NNS----VPEILGNLLKLHYLGLSNNQFVQELPKELEK-----LVQLSLLDASHNLFGG----EIPFQICSLKSLEMLNL 531 (620)
Q Consensus 465 ~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-----l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l 531 (620)
++. ++..+..+++|++|++++|.+.+..+..+.. .++|+.|++++|++++ .++..+..+++|++|++
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l 405 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEEC
Confidence 554 3445555667777777777665543333332 4567777777776664 45555666667777777
Q ss_pred CCCcCccccCccc-----cCCCCCCEEEccCCcCc
Q 043685 532 SHNNLSGSIPNCF-----DGMHGLSVIDISDNQLQ 561 (620)
Q Consensus 532 ~~n~l~~~~~~~~-----~~l~~L~~L~l~~N~l~ 561 (620)
++|+++......+ .....|+.|++.++.+.
T Consensus 406 ~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 406 SNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp CSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 7776654321111 12235666666666554
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=4.9e-32 Score=285.42 Aligned_cols=375 Identities=16% Similarity=0.101 Sum_probs=259.8
Q ss_pred ecEEEccCCccccccCCC-CCCCCCCCEEEccCCcCCCCCCCccccccccccccCCcccccCCCCCeeeccCCcCCCCCC
Q 043685 200 LIDLKLSSNQLTGYIPYS-LGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLERLGLMDNHLSGSIP 278 (620)
Q Consensus 200 L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 278 (620)
+++|+++++.++...... +..+++|++|++++|.++... ...++..+..+++|++|++++|.+.+..+
T Consensus 5 l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~-----------~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 73 (461)
T 1z7x_W 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEAR-----------CKDISSALRVNPALAELNLRSNELGDVGV 73 (461)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHH-----------HHHHHHHHHTCTTCCEEECTTCCCHHHHH
T ss_pred ceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHH-----------HHHHHHHHHhCCCcCEEeCCCCcCChHHH
Confidence 444555555444322111 344555666666655542100 00223444555666666666665543222
Q ss_pred CCC----CC--CCcCeEEecCCcccc----cCCCCccCCCCccEEEecCcccccccccccc-----ccCCCceeecCCCc
Q 043685 279 PSL----GN--STLTWLTFSLNHFTG----YLPHDICRGGALEIFIVDEYRFQGTIPTSLR-----NCTSLIRVRLDGNN 343 (620)
Q Consensus 279 ~~~----~~--~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~ 343 (620)
..+ .. .++++|++++|.++. .++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.
T Consensus 74 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence 111 11 146666776666663 3466777888999999999987654333322 24679999999999
Q ss_pred ccccc----CcccCCCCCCCEEECCCCcccCccCcccc-----CCCCCcEEECCCCccccC----CCccccCCCCCCEEe
Q 043685 344 LTGNI----SEALGIYPNLTFIDLSRNNFYGEISSNWG-----KCPKLGTLNVSMNNITGG----IPREIGNSSQLQALD 410 (620)
Q Consensus 344 l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~ 410 (620)
++... +..+..+++|++|++++|.+.+.....+. ..++|++|++++|.++.. ++..+..+++|++|+
T Consensus 154 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 233 (461)
T 1z7x_W 154 LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233 (461)
T ss_dssp CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEe
Confidence 88643 44566789999999999998765444332 367999999999998853 356677889999999
Q ss_pred cCCCeecccCC-----hhhhccCCCcEEEccCCccccc----CCccccCCCCCCEEEccCCcCCcchhhhhhC-----CC
Q 043685 411 LSLNQIVGDIP-----KELGKSNSLTKLILRGNQLTGR----LPTEIGSLIKLEYLDFSANRFNNSVPEILGN-----LL 476 (620)
Q Consensus 411 l~~n~~~~~~~-----~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~-----l~ 476 (620)
+++|.+.+... ..+..+++|++|++++|.++.. ++..+..+++|++|++++|.+++..+..+.. .+
T Consensus 234 Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 313 (461)
T 1z7x_W 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC 313 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTC
T ss_pred ccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCc
Confidence 99999875432 2223578999999999999853 5666777999999999999997655444433 36
Q ss_pred CCCEecCcCCcCccc----chhHhhhccCCCEEeCCCCcCccccchhccC-----CCCCCEEECCCCcCcc----ccCcc
Q 043685 477 KLHYLGLSNNQFVQE----LPKELEKLVQLSLLDASHNLFGGEIPFQICS-----LKSLEMLNLSHNNLSG----SIPNC 543 (620)
Q Consensus 477 ~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~~~~ 543 (620)
+|++|++++|.+.+. ++..+..+++|+.|++++|++++..+..+.. .++|++|++++|.+++ .+|..
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 999999999999765 4566788899999999999998765555542 7899999999999986 67788
Q ss_pred ccCCCCCCEEEccCCcCccCCCCC------cccCCCCccccCCCCCCC
Q 043685 544 FDGMHGLSVIDISDNQLQGPVPNS------TAFRNAPVEALEGNKGLC 585 (620)
Q Consensus 544 ~~~l~~L~~L~l~~N~l~~~~~~~------~~~~~l~~~~l~~Np~~C 585 (620)
+..+++|++|++++|+++...... ....+++.+.+.++.+.+
T Consensus 394 l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 394 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred HHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 888999999999999997531100 112357777777766543
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=7e-29 Score=246.13 Aligned_cols=274 Identities=21% Similarity=0.255 Sum_probs=216.0
Q ss_pred EEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCc--cCccccCCCCCcEEECCC
Q 043685 312 IFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGE--ISSNWGKCPKLGTLNVSM 389 (620)
Q Consensus 312 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~ 389 (620)
.++.+++.++ .+|..+ .+++++|++++|.+.......|..+++|++|++++|.+... .+..+.++++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4555555554 445433 25788888888888877777788888999999988887743 245566788899999999
Q ss_pred CccccCCCccccCCCCCCEEecCCCeecccCC-hhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCc-c
Q 043685 390 NNITGGIPREIGNSSQLQALDLSLNQIVGDIP-KELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNN-S 467 (620)
Q Consensus 390 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~-~ 467 (620)
|.+. .++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 9887 455567888999999999998886544 567888899999999998887777788888999999999998876 5
Q ss_pred hhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCC
Q 043685 468 VPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGM 547 (620)
Q Consensus 468 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 547 (620)
.+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..|..+..+
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 67788888999999999999987778888889999999999999988777788889999999999999988888888888
Q ss_pred C-CCCEEEccCCcCccCCCCCc---ccCCCCccccCCCCCCCCCCC
Q 043685 548 H-GLSVIDISDNQLQGPVPNST---AFRNAPVEALEGNKGLCGGVK 589 (620)
Q Consensus 548 ~-~L~~L~l~~N~l~~~~~~~~---~~~~l~~~~l~~Np~~C~~~~ 589 (620)
+ +|++|++++|++++..+... .+...+.+....+...|..|.
T Consensus 247 ~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 247 PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp CTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred hccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 4 89999999999987654321 233444555666777776543
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=5.6e-28 Score=252.17 Aligned_cols=251 Identities=23% Similarity=0.212 Sum_probs=177.8
Q ss_pred ccEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCC
Q 043685 310 LEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSM 389 (620)
Q Consensus 310 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 389 (620)
...++..+..+. .+|..+. ++++.|++++|++....+..|..+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 456666666665 4555443 5677778877777777777777777788888877777776667777777788888877
Q ss_pred CccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCc-ccccCCccccCCCCCCEEEccCCcCCcch
Q 043685 390 NNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQ-LTGRLPTEIGSLIKLEYLDFSANRFNNSV 468 (620)
Q Consensus 390 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 468 (620)
|.++...+..|..+++|++|++++|++....+..|..+++|++|++++|. +....+..|..+++|++|++++|.++..
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI- 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-
Confidence 77775555567777777777777777776666667777777777777743 3323334567777777777777777643
Q ss_pred hhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCC
Q 043685 469 PEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMH 548 (620)
Q Consensus 469 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 548 (620)
| .+..+++|++|++++|.+.+..|..|.++++|+.|++++|++++..+..|..+++|+.|+|++|+++...+..|..++
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 2 356677777777777777666667777777777777777777777777777777777777777777766666677777
Q ss_pred CCCEEEccCCcCccCCC
Q 043685 549 GLSVIDISDNQLQGPVP 565 (620)
Q Consensus 549 ~L~~L~l~~N~l~~~~~ 565 (620)
+|+.|+|++|++.....
T Consensus 280 ~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 280 HLERIHLHHNPWNCNCD 296 (440)
T ss_dssp TCCEEECCSSCEECSST
T ss_pred CCCEEEcCCCCccCCCC
Confidence 77777777777765544
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=7.3e-28 Score=252.21 Aligned_cols=251 Identities=22% Similarity=0.197 Sum_probs=198.1
Q ss_pred ccEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCC
Q 043685 310 LEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSM 389 (620)
Q Consensus 310 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 389 (620)
...++..+..+. .+|..+. ++++.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 456777776665 4555443 6788888888888887788888888888888888888877778888888888888888
Q ss_pred CccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCC-cccccCCccccCCCCCCEEEccCCcCCcch
Q 043685 390 NNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGN-QLTGRLPTEIGSLIKLEYLDFSANRFNNSV 468 (620)
Q Consensus 390 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 468 (620)
|.++...+..|..+++|++|++++|++....+..|..+++|++|++++| .+....+..|..+++|++|++++|.+++.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 8888666667888888888888888888766677888888888888885 44433344577888888888888888754
Q ss_pred hhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCC
Q 043685 469 PEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMH 548 (620)
Q Consensus 469 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 548 (620)
+ .+..+++|++|++++|.+.+..|..|.++++|+.|++++|++++..+..|..+++|+.|++++|++++..+..|..++
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 2 367778888888888888777778888888888888888888877788888888888888888888877777778888
Q ss_pred CCCEEEccCCcCccCCC
Q 043685 549 GLSVIDISDNQLQGPVP 565 (620)
Q Consensus 549 ~L~~L~l~~N~l~~~~~ 565 (620)
+|+.|++++|++.+...
T Consensus 291 ~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 291 YLVELHLHHNPWNCDCD 307 (452)
T ss_dssp TCCEEECCSSCEECSTT
T ss_pred CCCEEEccCCCcCCCCC
Confidence 88888888888876654
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=249.67 Aligned_cols=275 Identities=17% Similarity=0.145 Sum_probs=183.9
Q ss_pred eEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCc
Q 043685 288 WLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNN 367 (620)
Q Consensus 288 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~ 367 (620)
..+.+++.++. +|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 35 ~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 35555555553 333332 467777777777776555567777777777777777777666677777777777777777
Q ss_pred ccCccCccccCCCCCcEEECCCCccccCCC-ccccCCCCCCEEecCCC-eecccCChhhhccCCCcEEEccCCcccccCC
Q 043685 368 FYGEISSNWGKCPKLGTLNVSMNNITGGIP-REIGNSSQLQALDLSLN-QIVGDIPKELGKSNSLTKLILRGNQLTGRLP 445 (620)
Q Consensus 368 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 445 (620)
+++..+..|.++++|++|++++|.+..... ..+..+++|++|++++| .+.+..+..+..+++|++|++++|++.+..+
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 776555556777777777777777774433 35677777777777777 3555555667777777777777777776666
Q ss_pred ccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHh---hhccCCCEEeCCCCcCcc----ccch
Q 043685 446 TEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKEL---EKLVQLSLLDASHNLFGG----EIPF 518 (620)
Q Consensus 446 ~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~l~~n~l~~----~~~~ 518 (620)
..+..+++|++|++++|.+.......+..+++|++|++++|.+.+..+..+ ...+.++.++++++.+.+ .+|.
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271 (353)
T ss_dssp TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHH
Confidence 777777777777777777764444445556777777777777765433322 234566677777776654 2455
Q ss_pred hccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCC
Q 043685 519 QICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVP 565 (620)
Q Consensus 519 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 565 (620)
.+..+++|++|++++|+++.+.+..|..+++|++|++++|++.+..|
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 66677777777777777774444445677777777777777776655
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=7.2e-28 Score=238.81 Aligned_cols=250 Identities=24% Similarity=0.281 Sum_probs=218.8
Q ss_pred ceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccC--CCccccCCCCCCEEecC
Q 043685 335 IRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGG--IPREIGNSSQLQALDLS 412 (620)
Q Consensus 335 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~ 412 (620)
+.++.+++.++..+.. ..++|++|++++|.+....+..|.++++|++|++++|.+... .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~---~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSC---CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCC---CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 5678888887755442 236899999999999977777789999999999999998733 24566789999999999
Q ss_pred CCeecccCChhhhccCCCcEEEccCCcccccCC-ccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcc-
Q 043685 413 LNQIVGDIPKELGKSNSLTKLILRGNQLTGRLP-TEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQ- 490 (620)
Q Consensus 413 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~- 490 (620)
+|.+. .++..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 99998 456668899999999999999985544 578899999999999999998888889999999999999999976
Q ss_pred cchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCCc-c
Q 043685 491 ELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNST-A 569 (620)
Q Consensus 491 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~-~ 569 (620)
..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..|... .
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 578889999999999999999998889999999999999999999998888889999999999999999998877553 3
Q ss_pred c-CCCCccccCCCCCCCCCC
Q 043685 570 F-RNAPVEALEGNKGLCGGV 588 (620)
Q Consensus 570 ~-~~l~~~~l~~Np~~C~~~ 588 (620)
+ ++++.+++.+||+.|+|.
T Consensus 246 ~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 246 FPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCTTCCEEECTTCCEECSGG
T ss_pred hhccCCEEEccCCCeecccC
Confidence 4 489999999999999874
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=7.2e-28 Score=243.85 Aligned_cols=279 Identities=16% Similarity=0.117 Sum_probs=201.6
Q ss_pred CCCccEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEE
Q 043685 307 GGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLN 386 (620)
Q Consensus 307 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 386 (620)
|+.....+.+++.++ .+|..+. ++|++|++++|.+++.....+..+++|++|++++|.+++..+..|.++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 444455666666666 4555443 5788888888888877766778888888888888888877777788888888888
Q ss_pred CCCCccccCCCccccCCCCCCEEecCCCeecccCC-hhhhccCCCcEEEccCC-cccccCCccccCCCCCCEEEccCCcC
Q 043685 387 VSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIP-KELGKSNSLTKLILRGN-QLTGRLPTEIGSLIKLEYLDFSANRF 464 (620)
Q Consensus 387 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~ls~n~l 464 (620)
+++|.+++..+..+..+++|++|++++|++.+..+ ..+..+++|++|++++| .+.+..+..+..+++|++|++++|.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 88888875555557778888888888888774433 36777888888888887 45545566777788888888888888
Q ss_pred CcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhcc---CCCCCCEEECCCCcCccc--
Q 043685 465 NNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQIC---SLKSLEMLNLSHNNLSGS-- 539 (620)
Q Consensus 465 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~l~~~-- 539 (620)
++..+..+..+++|++|++++|.+....+..+..+++|+.|++++|++++..+..+. ....++.++++++.+.+.
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l 266 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch
Confidence 777777788888888888888887544334455678888888888888765444332 356677788887777652
Q ss_pred --cCccccCCCCCCEEEccCCcCccCCCCC-cccCCCCccccCCCCCCCCCC
Q 043685 540 --IPNCFDGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKGLCGGV 588 (620)
Q Consensus 540 --~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~l~~Np~~C~~~ 588 (620)
+|..+..+++|++|++++|+++...+.. ..+++++.+++.+||+.|+|+
T Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 267 FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 5666777888888888888888544432 357778888888888888764
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=5.7e-28 Score=236.89 Aligned_cols=251 Identities=20% Similarity=0.141 Sum_probs=169.6
Q ss_pred ceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCC
Q 043685 335 IRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLN 414 (620)
Q Consensus 335 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 414 (620)
+.++.+++.++..+. ...++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~---~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCT---TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCc---CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 345555555543322 12356667777777666665566666677777777777666555666666777777777777
Q ss_pred e-ecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccch
Q 043685 415 Q-IVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELP 493 (620)
Q Consensus 415 ~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 493 (620)
+ +....+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 5 554546666677777777777777775556666777777777777777776666667777777777777777766555
Q ss_pred hHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCCcccCCC
Q 043685 494 KELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNSTAFRNA 573 (620)
Q Consensus 494 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l 573 (620)
..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+..+....+..+
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l 250 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL 250 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHH
Confidence 56777778888888888877777777777788888888888877666666777788888888888877655543333334
Q ss_pred CccccCCCCCCCCCC
Q 043685 574 PVEALEGNKGLCGGV 588 (620)
Q Consensus 574 ~~~~l~~Np~~C~~~ 588 (620)
+......+.+.|..|
T Consensus 251 ~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 251 QKFRGSSSEVPCSLP 265 (285)
T ss_dssp HHCCSEECCCBEEES
T ss_pred HhcccccCccccCCc
Confidence 444455666666544
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=8.3e-27 Score=244.17 Aligned_cols=247 Identities=20% Similarity=0.166 Sum_probs=179.3
Q ss_pred cCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCC
Q 043685 286 LTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSR 365 (620)
Q Consensus 286 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 365 (620)
...++..+..++. +|..+. +++++|++++|.+.+..+..|.++++|+.|++++|.+.+..+..|..+++|++|++++
T Consensus 56 ~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 3455555555543 333332 5777788888877777677777778888888888877777777777777888888888
Q ss_pred CcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCC-eecccCChhhhccCCCcEEEccCCcccccC
Q 043685 366 NNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLN-QIVGDIPKELGKSNSLTKLILRGNQLTGRL 444 (620)
Q Consensus 366 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 444 (620)
|.++...+..|.++++|++|++++|.+....+..|..+++|++|++++| .+....+..+..+++|++|++++|++++ +
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-M 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-C
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-c
Confidence 8777666666777778888888888777665666777778888888774 4443444457777778888888887773 3
Q ss_pred CccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCC
Q 043685 445 PTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLK 524 (620)
Q Consensus 445 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 524 (620)
| .+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|++++..+..|..++
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 3 466777788888888887777777777777888888888877777777777777888888888887766667777777
Q ss_pred CCCEEECCCCcCc
Q 043685 525 SLEMLNLSHNNLS 537 (620)
Q Consensus 525 ~L~~L~l~~n~l~ 537 (620)
+|+.|++++|++.
T Consensus 291 ~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 291 YLVELHLHHNPWN 303 (452)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEccCCCcC
Confidence 8888888877764
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1e-26 Score=242.68 Aligned_cols=228 Identities=21% Similarity=0.188 Sum_probs=134.3
Q ss_pred CCccEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEEC
Q 043685 308 GALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNV 387 (620)
Q Consensus 308 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 387 (620)
+.++.|++++|.+.+..+..|.++++|++|++++|.+....+..|..+++|++|++++|.++...+..|.++++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45566666666665555555666666666666666666555555666666666666666666555555566666666666
Q ss_pred CCCccccCCCccccCCCCCCEEecCCC-eecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCc
Q 043685 388 SMNNITGGIPREIGNSSQLQALDLSLN-QIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNN 466 (620)
Q Consensus 388 ~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~ 466 (620)
++|.+....+..|..+++|++|++++| .+....+..|..+++|++|++++|.++ .+| .+..+++|++|++++|.+++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence 666665444445556666666666653 233233334555666666666666665 333 34555666666666666665
Q ss_pred chhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCc
Q 043685 467 SVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLS 537 (620)
Q Consensus 467 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 537 (620)
..+..|..+++|++|++++|.+.+..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 55556666666666666666665555555666666666666666666555555556666666666666553
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=1.2e-29 Score=275.97 Aligned_cols=234 Identities=13% Similarity=0.105 Sum_probs=113.7
Q ss_pred CccCCCCccEEEecCccccccccccccccCCCceeecCCCccccccC-cccCCCCCCCEEECCCCcccC-ccCccccCCC
Q 043685 303 DICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNIS-EALGIYPNLTFIDLSRNNFYG-EISSNWGKCP 380 (620)
Q Consensus 303 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~ 380 (620)
.+..+++|+.+.+.++. .+.+|..+..+++|++|++++|.+..... ..+..+++|+.|+++ +.+.+ .++..+..++
T Consensus 265 ~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~ 342 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCK 342 (592)
T ss_dssp CCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCT
T ss_pred HhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCC
Confidence 44455666666666542 22455556666677777777766543222 224566667777666 22222 1222234456
Q ss_pred CCcEEECCC-----------CccccC-CCccccCCCCCCEEecCCCeecccCChhhhc-cCCCcEEEcc----CCccccc
Q 043685 381 KLGTLNVSM-----------NNITGG-IPREIGNSSQLQALDLSLNQIVGDIPKELGK-SNSLTKLILR----GNQLTGR 443 (620)
Q Consensus 381 ~L~~L~l~~-----------n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~----~n~l~~~ 443 (620)
+|++|++++ +.++.. ....+..+++|++|+++.+.+++..+..+.. +++|++|+++ .+.+++.
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence 666666662 233311 1112234566666666555555444444433 5566666664 3344321
Q ss_pred -----CCccccCCCCCCEEEccCCc--CCcchhhhh-hCCCCCCEecCcCCcCccc-chhHhhhccCCCEEeCCCCcCcc
Q 043685 444 -----LPTEIGSLIKLEYLDFSANR--FNNSVPEIL-GNLLKLHYLGLSNNQFVQE-LPKELEKLVQLSLLDASHNLFGG 514 (620)
Q Consensus 444 -----~~~~~~~~~~L~~L~ls~n~--l~~~~~~~l-~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~ 514 (620)
++..+..+++|++|++++|. +++.....+ ..+++|++|++++|.+++. ++..+.++++|+.|++++|.+++
T Consensus 423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence 11123345555555554332 333322222 2355555555555555432 23333455555555555555543
Q ss_pred cc-chhccCCCCCCEEECCCCcCcc
Q 043685 515 EI-PFQICSLKSLEMLNLSHNNLSG 538 (620)
Q Consensus 515 ~~-~~~~~~l~~L~~L~l~~n~l~~ 538 (620)
.. +..+..+++|+.|++++|+++.
T Consensus 503 ~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 503 RAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHHHHHHhcCccCeeECcCCcCCH
Confidence 31 2222345555555555555543
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1e-26 Score=227.98 Aligned_cols=253 Identities=19% Similarity=0.160 Sum_probs=201.5
Q ss_pred cEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCC
Q 043685 311 EIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMN 390 (620)
Q Consensus 311 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 390 (620)
+.++.++..+. .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 34555555554 344433 368888888888888877778888889999999988888777888888899999999998
Q ss_pred c-cccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchh
Q 043685 391 N-ITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVP 469 (620)
Q Consensus 391 ~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 469 (620)
. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 7 776667788888999999999998887777788888999999999999886666668888999999999999987777
Q ss_pred hhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCC
Q 043685 470 EILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHG 549 (620)
Q Consensus 470 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 549 (620)
..+..+++|++|++++|.+.+..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++....+.. .....
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~ 249 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAW 249 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHH
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHH
Confidence 77888999999999999998887888889999999999999999877778889999999999999887433211 11123
Q ss_pred CCEEEccCCcCccCCCCC
Q 043685 550 LSVIDISDNQLQGPVPNS 567 (620)
Q Consensus 550 L~~L~l~~N~l~~~~~~~ 567 (620)
++.+..+.+.+.+..|..
T Consensus 250 l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 250 LQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp HHHCCSEECCCBEEESGG
T ss_pred HHhcccccCccccCCchH
Confidence 445557778887777754
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.9e-26 Score=230.00 Aligned_cols=225 Identities=18% Similarity=0.228 Sum_probs=156.2
Q ss_pred CCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEec
Q 043685 332 TSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDL 411 (620)
Q Consensus 332 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 411 (620)
+.++.|++++|.+... +..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCSSC-CSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCchhc-ChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 4555666666655532 333444566666666666665 45555566666666666666665 44555666666666666
Q ss_pred CCCeecccCChhhh---------ccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEec
Q 043685 412 SLNQIVGDIPKELG---------KSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLG 482 (620)
Q Consensus 412 ~~n~~~~~~~~~~~---------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ 482 (620)
++|.+.+.+|..+. .+++|++|++++|+++ .+|..+..+++|++|++++|.+++ ++..+..+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEE
Confidence 66555555554443 4777888888888777 667777777888888888887774 444577778888888
Q ss_pred CcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCc
Q 043685 483 LSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQ 561 (620)
Q Consensus 483 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 561 (620)
+++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.+++..+.+.
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 8887777777777778888888888888777777777888888888888888877788888888888888887776655
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=5.3e-26 Score=226.86 Aligned_cols=225 Identities=20% Similarity=0.280 Sum_probs=183.1
Q ss_pred CCccEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEEC
Q 043685 308 GALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNV 387 (620)
Q Consensus 308 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 387 (620)
+.++.|+++++.+. .+|..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+. .+|..+.++++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 45666667666666 56666666777777777777777 44556677777777777777777 55666777777777777
Q ss_pred CCCccccCCCcccc---------CCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEE
Q 043685 388 SMNNITGGIPREIG---------NSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLD 458 (620)
Q Consensus 388 ~~n~l~~~~~~~~~---------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 458 (620)
++|.+.+.+|..+. .+++|++|++++|.++ .+|..+..+++|++|++++|+++ .+|..+..+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEE
Confidence 77766656665544 4889999999999888 77888889999999999999998 5666788899999999
Q ss_pred ccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCc
Q 043685 459 FSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLS 537 (620)
Q Consensus 459 ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 537 (620)
+++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.+++..+.+.
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 9999988888888999999999999999988888988999999999999999999899999999999999999877665
No 62
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=1.5e-28 Score=267.35 Aligned_cols=412 Identities=15% Similarity=0.082 Sum_probs=256.4
Q ss_pred cCcccccCCCCCCEEEccCCcCC---cccCccCC------------CCCCCCEEeCCCCCCcCCCCcccCC-CC-CCcEE
Q 043685 118 SFPPFLGNLSNIVRLYINNNSLS---SSIPTNIG------------NLKFLFELDLSNNQLGGSIPLSFGN-LS-NLARL 180 (620)
Q Consensus 118 ~~~~~l~~l~~L~~L~Ls~n~~~---~~~~~~~~------------~l~~L~~L~l~~~~l~~~~~~~l~~-l~-~L~~L 180 (620)
..+..+..+++|++|+++++... +..|..++ .+++|++|++++|.+.+..+..+.. ++ +|++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 33455677888999999876431 12222222 4566666666666555433333333 22 26666
Q ss_pred EcccccccccCCCCCCceeecEEEccCCccccccCCCCCCCCCCCEEEccCCcCCCCCCCccccccccccccCCcccccC
Q 043685 181 CLYKNLLIGSIPSSLGNLKLIDLKLSSNQLTGYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNL 260 (620)
Q Consensus 181 ~l~~n~~~~~~~~~l~~l~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~ 260 (620)
++++|.... +..+ +.....+++|++|++++|.+++.. ...++..+..+
T Consensus 144 ~L~~~~~~~--~~~l-------------------~~~~~~~~~L~~L~L~~~~~~~~~-----------~~~l~~~~~~~ 191 (592)
T 3ogk_B 144 KLDKCSGFT--TDGL-------------------LSIVTHCRKIKTLLMEESSFSEKD-----------GKWLHELAQHN 191 (592)
T ss_dssp EEESCEEEE--HHHH-------------------HHHHHHCTTCSEEECTTCEEECCC-----------SHHHHHHHHHC
T ss_pred ECcCCCCcC--HHHH-------------------HHHHhhCCCCCEEECccccccCcc-----------hhHHHHHHhcC
Confidence 665543110 0000 011123445555555555432100 00011223344
Q ss_pred CCCCeeeccCCcCCCCCCCC----CC-CCCcCeEEecCCcccccCCCCccCCCCccEEEecCcccc---ccccccccccC
Q 043685 261 TNLERLGLMDNHLSGSIPPS----LG-NSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQ---GTIPTSLRNCT 332 (620)
Q Consensus 261 ~~L~~L~l~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~l~ 332 (620)
++|++|++++|.+.+..... +. .++|+.|+++++.+.+ .+..+..+++|++|.+..+... +..+..+..++
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 55555555555543211111 11 1455555555555543 3355666778888888754322 23445667788
Q ss_pred CCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccC-ccccCCCCCcEEECCCCccccCCCccccCCCCCCEEec
Q 043685 333 SLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEIS-SNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDL 411 (620)
Q Consensus 333 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 411 (620)
+|+.+.+.++... ..+..+..+++|++|++++|.+++... ..+..+++|++|+++++-.....+..+..+++|++|++
T Consensus 271 ~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 271 KLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp TCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred cccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence 9999999875433 345566778999999999998765433 34578999999999944322233344567899999999
Q ss_pred CC-----------Ceeccc-CChhhhccCCCcEEEccCCcccccCCccccC-CCCCCEEEcc----CCcCCcc-----hh
Q 043685 412 SL-----------NQIVGD-IPKELGKSNSLTKLILRGNQLTGRLPTEIGS-LIKLEYLDFS----ANRFNNS-----VP 469 (620)
Q Consensus 412 ~~-----------n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~ls----~n~l~~~-----~~ 469 (620)
++ +.+++. .......+++|++|++..+.+++..+..+.. +++|++|+++ .|.+++. ++
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~ 429 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH
Confidence 94 455533 2223456899999999888888655555554 8899999996 6677753 45
Q ss_pred hhhhCCCCCCEecCcCCc--CcccchhHh-hhccCCCEEeCCCCcCccc-cchhccCCCCCCEEECCCCcCccc-cCccc
Q 043685 470 EILGNLLKLHYLGLSNNQ--FVQELPKEL-EKLVQLSLLDASHNLFGGE-IPFQICSLKSLEMLNLSHNNLSGS-IPNCF 544 (620)
Q Consensus 470 ~~l~~l~~L~~L~l~~n~--l~~~~~~~l-~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~ 544 (620)
..+..+++|++|++++|. +.+..+..+ ..+++|+.|++++|++++. .+..+..+++|+.|++++|+++.. .+...
T Consensus 430 ~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 509 (592)
T 3ogk_B 430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV 509 (592)
T ss_dssp HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH
T ss_pred HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH
Confidence 557789999999997654 555544444 3489999999999999864 344567899999999999998654 33444
Q ss_pred cCCCCCCEEEccCCcCccC
Q 043685 545 DGMHGLSVIDISDNQLQGP 563 (620)
Q Consensus 545 ~~l~~L~~L~l~~N~l~~~ 563 (620)
..+++|++|++++|+++..
T Consensus 510 ~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 510 TKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHCSSCCEEEEESCBCCTT
T ss_pred HhcCccCeeECcCCcCCHH
Confidence 6789999999999998754
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.1e-27 Score=235.73 Aligned_cols=245 Identities=22% Similarity=0.163 Sum_probs=143.7
Q ss_pred cCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccC-ccCcccc-------CCCCCcEEECCCCccccCCCccc--
Q 043685 331 CTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYG-EISSNWG-------KCPKLGTLNVSMNNITGGIPREI-- 400 (620)
Q Consensus 331 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~-- 400 (620)
.++|+.+++.+|.+ ..+..+... |+.|++++|.+.. .++..+. ++++|++|++++|.+.+..|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34455555555555 122222211 5555555555522 2222222 45666666666666665555543
Q ss_pred cCCCCCCEEecCCCeecccCChhhhcc-----CCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcc--hhhhh-
Q 043685 401 GNSSQLQALDLSLNQIVGDIPKELGKS-----NSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNS--VPEIL- 472 (620)
Q Consensus 401 ~~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~~~l- 472 (620)
..+++|++|++++|++++. |..+..+ ++|++|++++|++.+..+..+..+++|++|++++|++.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 5666666666666666654 5555555 6677777777777655556666777777777777766543 22233
Q ss_pred -hCCCCCCEecCcCCcCcc---cchhHhhhccCCCEEeCCCCcCccccc-hhccCCCCCCEEECCCCcCccccCccccCC
Q 043685 473 -GNLLKLHYLGLSNNQFVQ---ELPKELEKLVQLSLLDASHNLFGGEIP-FQICSLKSLEMLNLSHNNLSGSIPNCFDGM 547 (620)
Q Consensus 473 -~~l~~L~~L~l~~n~l~~---~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 547 (620)
..+++|++|++++|.+.+ .....+..+++|+.|++++|++++..| ..+..+++|+.|++++|+++ .+|..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 566777777777777652 112233456777777777777776553 34455677777777777776 4454443
Q ss_pred CCCCEEEccCCcCccCCCCCcccCCCCccccCCCCCC
Q 043685 548 HGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKGL 584 (620)
Q Consensus 548 ~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~Np~~ 584 (620)
++|++||+++|++++. |....+++++.+++.+|++.
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence 6677777777777655 44455666777777777654
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=3.5e-26 Score=227.44 Aligned_cols=257 Identities=18% Similarity=0.210 Sum_probs=205.3
Q ss_pred CccEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECC
Q 043685 309 ALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVS 388 (620)
Q Consensus 309 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 388 (620)
.++..+++.+.+.......+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 45556666666665555556667899999999999998877888999999999999999886654 8889999999999
Q ss_pred CCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcch
Q 043685 389 MNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSV 468 (620)
Q Consensus 389 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 468 (620)
+|.+++.. ..++|++|++++|.+++..+. .+++|++|++++|++++..+..+..+++|++|++++|.+++..
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 99987432 348999999999999865443 3678999999999999777778888999999999999998876
Q ss_pred hhhh-hCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCC
Q 043685 469 PEIL-GNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGM 547 (620)
Q Consensus 469 ~~~l-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 547 (620)
+..+ ..+++|++|++++|.+.+. + ....+++|+.|++++|++++.. ..+..+++|+.|++++|+++ .+|..+..+
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred HHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 6666 4789999999999999765 2 2335889999999999999654 45888999999999999998 467778889
Q ss_pred CCCCEEEccCCcCc-cCCCCC-cccCCCCccccC
Q 043685 548 HGLSVIDISDNQLQ-GPVPNS-TAFRNAPVEALE 579 (620)
Q Consensus 548 ~~L~~L~l~~N~l~-~~~~~~-~~~~~l~~~~l~ 579 (620)
++|+.|++++|++. +.+|.. ..++.++.+.+.
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 99999999999998 333322 235556666666
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.1e-26 Score=230.98 Aligned_cols=266 Identities=18% Similarity=0.138 Sum_probs=209.1
Q ss_pred cCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCC
Q 043685 286 LTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSR 365 (620)
Q Consensus 286 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 365 (620)
++..+++.+.+.......+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 3444555555554444445567789999999999988777888889999999999999886554 88889999999999
Q ss_pred CcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCC
Q 043685 366 NNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLP 445 (620)
Q Consensus 366 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 445 (620)
|.+++.. ..++|++|++++|.+.+..+. .+++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 9887543 347899999999988855433 36789999999999987777788888999999999999886666
Q ss_pred ccc-cCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCC
Q 043685 446 TEI-GSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLK 524 (620)
Q Consensus 446 ~~~-~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 524 (620)
..+ ..+++|++|++++|.+++... ...+++|++|++++|.+.+.. ..+..+++|+.|++++|+++ .+|..+..++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~ 237 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred HHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence 555 468899999999999876522 334789999999999997544 45888899999999999998 4577788889
Q ss_pred CCCEEECCCCcCc-cccCccccCCCCCCEEEccCC-cCccCCC
Q 043685 525 SLEMLNLSHNNLS-GSIPNCFDGMHGLSVIDISDN-QLQGPVP 565 (620)
Q Consensus 525 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N-~l~~~~~ 565 (620)
+|+.|++++|++. +..|..+..++.|+.+++++| .+.+..|
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 9999999999988 667788888888999988844 4454433
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.4e-26 Score=229.69 Aligned_cols=250 Identities=16% Similarity=0.171 Sum_probs=208.8
Q ss_pred ccCCCCccEEEecCccccccccccccccCCCceeecCCCcccc-ccCcccC-------CCCCCCEEECCCCcccCccCcc
Q 043685 304 ICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTG-NISEALG-------IYPNLTFIDLSRNNFYGEISSN 375 (620)
Q Consensus 304 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~ 375 (620)
++...+|+.+++.+|.+ .+|..+... |+.|++++|.+.. ..+..+. .+++|++|++++|.+++..+..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 45567899999999998 667665544 9999999999853 2333333 6899999999999999888887
Q ss_pred c--cCCCCCcEEECCCCccccCCCccccCC-----CCCCEEecCCCeecccCChhhhccCCCcEEEccCCccccc--CCc
Q 043685 376 W--GKCPKLGTLNVSMNNITGGIPREIGNS-----SQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGR--LPT 446 (620)
Q Consensus 376 ~--~~~~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~ 446 (620)
+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..+..+..+++|++|++++|++.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 6 8999999999999999976 7667666 8999999999999988888999999999999999997654 233
Q ss_pred cc--cCCCCCCEEEccCCcCCc---chhhhhhCCCCCCEecCcCCcCcccch-hHhhhccCCCEEeCCCCcCccccchhc
Q 043685 447 EI--GSLIKLEYLDFSANRFNN---SVPEILGNLLKLHYLGLSNNQFVQELP-KELEKLVQLSLLDASHNLFGGEIPFQI 520 (620)
Q Consensus 447 ~~--~~~~~L~~L~ls~n~l~~---~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~ 520 (620)
.+ ..+++|++|++++|.+++ .....+..+++|++|++++|.+.+..| ..+..+++|+.|++++|+++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 33 789999999999999984 233455788999999999999987664 45667899999999999999 666666
Q ss_pred cCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccC
Q 043685 521 CSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGP 563 (620)
Q Consensus 521 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 563 (620)
. ++|+.|++++|++++. |. +..+++|++|++++|++++.
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 5 8999999999999976 66 88999999999999999853
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.4e-28 Score=267.67 Aligned_cols=235 Identities=16% Similarity=0.142 Sum_probs=143.4
Q ss_pred ccccccccCCCceeecCCCcccccc-CcccCCCCCCCEEECCCCcccCc-cCccccCCCCCcEEECCC---------Ccc
Q 043685 324 IPTSLRNCTSLIRVRLDGNNLTGNI-SEALGIYPNLTFIDLSRNNFYGE-ISSNWGKCPKLGTLNVSM---------NNI 392 (620)
Q Consensus 324 ~~~~l~~l~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~---------n~l 392 (620)
++..+..+++|++|++++|.+.... ...+..+++|++|++++| +.+. .+.....+++|++|++.+ +.+
T Consensus 281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence 4444445677777777777755322 122456778888888776 3322 112223467788887733 233
Q ss_pred ccCCCccc-cCCCCCCEEecCCCeecccCChhhh-ccCCCcEEEcc--C----Cccccc-----CCccccCCCCCCEEEc
Q 043685 393 TGGIPREI-GNSSQLQALDLSLNQIVGDIPKELG-KSNSLTKLILR--G----NQLTGR-----LPTEIGSLIKLEYLDF 459 (620)
Q Consensus 393 ~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~--~----n~l~~~-----~~~~~~~~~~L~~L~l 459 (620)
+......+ ..+++|++|.++.+.+++.....+. .+++|+.|+++ + +.++.. ++..+..+++|++|++
T Consensus 360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L 439 (594)
T 2p1m_B 360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence 32211122 2477888888777777654444443 47888888888 3 344411 1112456778888888
Q ss_pred cCCcCCcchhhhhhC-CCCCCEecCcCCcCcccchhHh-hhccCCCEEeCCCCcCccccch-hccCCCCCCEEECCCCcC
Q 043685 460 SANRFNNSVPEILGN-LLKLHYLGLSNNQFVQELPKEL-EKLVQLSLLDASHNLFGGEIPF-QICSLKSLEMLNLSHNNL 536 (620)
Q Consensus 460 s~n~l~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l 536 (620)
++ .+++.....+.. +++|++|++++|.+++..+..+ .++++|+.|++++|.+++.... ....+++|+.|++++|++
T Consensus 440 ~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 440 SG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 77 666555555544 7788888888888765544444 6678888888888888644433 334577888888888887
Q ss_pred ccccCccc-cCCCCCCEEEccCCcC
Q 043685 537 SGSIPNCF-DGMHGLSVIDISDNQL 560 (620)
Q Consensus 537 ~~~~~~~~-~~l~~L~~L~l~~N~l 560 (620)
+......+ ..++.++...+..+.-
T Consensus 519 ~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 519 SFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp BHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred CHHHHHHHHHhCCCCEEEEecCCCc
Confidence 54333333 4567776666665543
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3e-26 Score=241.16 Aligned_cols=246 Identities=20% Similarity=0.226 Sum_probs=190.3
Q ss_pred ccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEE
Q 043685 330 NCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQAL 409 (620)
Q Consensus 330 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 409 (620)
.+++|+.|++++|.+.+..+..|..+++|+.|++++|.+++..+ +..+++|++|++++|.+++.. ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 34578888888888887777788888888888888888876654 778888888888888887432 23788888
Q ss_pred ecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhh-CCCCCCEecCcCCcC
Q 043685 410 DLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILG-NLLKLHYLGLSNNQF 488 (620)
Q Consensus 410 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~-~l~~L~~L~l~~n~l 488 (620)
++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 8888888765443 457888999999998877777888888999999999998887777765 688999999999988
Q ss_pred cccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCc-cCCCC-
Q 043685 489 VQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQ-GPVPN- 566 (620)
Q Consensus 489 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~- 566 (620)
.+..+ ...+++|+.|++++|.+++..+ .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|.
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred ccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 76532 3458899999999999986544 48888999999999999885 6777888889999999999987 32222
Q ss_pred CcccCCCCccccC-------CCCCCCCCCC
Q 043685 567 STAFRNAPVEALE-------GNKGLCGGVK 589 (620)
Q Consensus 567 ~~~~~~l~~~~l~-------~Np~~C~~~~ 589 (620)
...++.+..+.+. +||+.|.++.
T Consensus 258 ~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 258 FSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred HHhCCCCcEEeccccccccCCCcccccCCc
Confidence 1224445555554 8888888754
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=2.7e-24 Score=208.70 Aligned_cols=213 Identities=25% Similarity=0.278 Sum_probs=171.6
Q ss_pred CCCccccceeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCCEEECCCCCCCCcCCccccCCCCCCEEECCCCCCcccC
Q 043685 19 ISPCAWYGISCNDAGRVINISLRNTGLSGTLRDLSFSSFPQLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKI 98 (620)
Q Consensus 19 ~~~c~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L~~~~i~~~~ 98 (620)
.++|.|.|..|...+.+++++++++.++.. +..+. +++++|++++|.+.+..+.+|.++++|++|++++|.+....
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~i--p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLTAI--PSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCSSC--CSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCCcc--CCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 578999999998777889999999998853 33333 68999999999999877789999999999999999987544
Q ss_pred C---CCCCCCcEEEccCCcCCCcCcccccCCCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCCCCCcCCCCcccCCCC
Q 043685 99 P---LELSSIEELFLYSNHLNESFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSNNQLGGSIPLSFGNLS 175 (620)
Q Consensus 99 ~---~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~ 175 (620)
+ ..+++|++|++++|.++...+..|.++++|++|++++|.++...+..|..+++|++|++++|.+.+..+..|..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 3 2467888888888888877777788888888888888888877777788888888888888888876666688888
Q ss_pred CCcEEEcccccccccCCCCCCcee-ecEEEccCCccccccCCCCCCCCCCCEEEccCCcCC
Q 043685 176 NLARLCLYKNLLIGSIPSSLGNLK-LIDLKLSSNQLTGYIPYSLGNVTSLSSLLLAKNKLY 235 (620)
Q Consensus 176 ~L~~L~l~~n~~~~~~~~~l~~l~-L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 235 (620)
+|++|++++|.+....+..+..+. |++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 888888888888766666677666 778888887777666666777777777777777764
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=3.4e-24 Score=208.88 Aligned_cols=212 Identities=26% Similarity=0.213 Sum_probs=175.1
Q ss_pred CCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEc
Q 043685 356 PNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLIL 435 (620)
Q Consensus 356 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 435 (620)
++|++|++++|.+++..+..|.++++|++|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46888888888887777667788888888888888887666667888888888888888888777777888888888888
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCCcc-hhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCC----EEeCCCC
Q 043685 436 RGNQLTGRLPTEIGSLIKLEYLDFSANRFNNS-VPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLS----LLDASHN 510 (620)
Q Consensus 436 ~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~l~~n 510 (620)
++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+.+..+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 88888866666788889999999999988764 578888899999999999999877777787777777 8999999
Q ss_pred cCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCCc
Q 043685 511 LFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNST 568 (620)
Q Consensus 511 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 568 (620)
++++..+..+.. .+|+.|++++|++++..+..|..+++|+.|++++|++.+..+...
T Consensus 188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence 999766655544 589999999999998777778899999999999999998877543
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.2e-25 Score=234.47 Aligned_cols=224 Identities=22% Similarity=0.161 Sum_probs=195.9
Q ss_pred cCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCc
Q 043685 352 LGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLT 431 (620)
Q Consensus 352 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 431 (620)
...+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+ +..+++|++|++++|.+++.. ..++|+
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~ 102 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIE 102 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcC
Confidence 3456689999999999999888899999999999999999986554 889999999999999998543 338999
Q ss_pred EEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhh-hccCCCEEeCCCC
Q 043685 432 KLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELE-KLVQLSLLDASHN 510 (620)
Q Consensus 432 ~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n 510 (620)
+|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..+. .+++|+.|++++|
T Consensus 103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 999999999865443 468899999999999988888899999999999999999988887775 7999999999999
Q ss_pred cCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCCcccCCCCccccCCCCCCCCCC
Q 043685 511 LFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKGLCGGV 588 (620)
Q Consensus 511 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~Np~~C~~~ 588 (620)
.+++..+ +..+++|+.|++++|.+++..| .+..+++|+.|++++|.+++.++....+++++.+++.+|++.|+++
T Consensus 180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 180 FIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp CCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred ccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcch
Confidence 9997643 3468999999999999997555 4889999999999999999866665668899999999999998754
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.6e-24 Score=211.21 Aligned_cols=224 Identities=23% Similarity=0.198 Sum_probs=191.7
Q ss_pred EECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcc
Q 043685 361 IDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQL 440 (620)
Q Consensus 361 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 440 (620)
++..+..+. .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++
T Consensus 12 ~~c~~~~l~-~ip~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 333444444 234333 35799999999999977777899999999999999999988788899999999999999999
Q ss_pred cccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCccc-chhHhhhccCCCEEeCCCCcCccccchh
Q 043685 441 TGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQE-LPKELEKLVQLSLLDASHNLFGGEIPFQ 519 (620)
Q Consensus 441 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 519 (620)
++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|+.|++++|++++..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 977778899999999999999999887777789999999999999999764 5889999999999999999999887777
Q ss_pred ccCCCCCC----EEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCC-cccCCCCccccCCCCCCCCCC
Q 043685 520 ICSLKSLE----MLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKGLCGGV 588 (620)
Q Consensus 520 ~~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~l~~Np~~C~~~ 588 (620)
+..+++|+ .|++++|++++..+..+.. .+|++|++++|++++..+.. ..+++++.+++.+||+.|+|+
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred hhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 87766666 8999999999777766644 58999999999999776654 458899999999999999985
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=1.7e-24 Score=211.90 Aligned_cols=206 Identities=23% Similarity=0.170 Sum_probs=157.6
Q ss_pred cCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCc
Q 043685 352 LGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLT 431 (620)
Q Consensus 352 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 431 (620)
+..++++++++++++.++.. |..+ .++++.|++++|.+.+..+..|..+++|++|++++|.+++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTAL-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSC-CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcC-CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 55677888888888888744 3333 36788888888888876677788888888888888888754332 6778888
Q ss_pred EEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCc
Q 043685 432 KLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNL 511 (620)
Q Consensus 432 ~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 511 (620)
+|++++|++. .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 8888888887 667777778888888888888877777778888888888888888876666667778888888888888
Q ss_pred CccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCC
Q 043685 512 FGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPV 564 (620)
Q Consensus 512 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 564 (620)
+++..+..|..+++|+.|++++|+++ .+|..+...++|+.+++++|++.+..
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 88666666777888888888888887 45656666777888888888876543
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=3.7e-24 Score=207.72 Aligned_cols=206 Identities=21% Similarity=0.252 Sum_probs=155.4
Q ss_pred CCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEcc
Q 043685 357 NLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILR 436 (620)
Q Consensus 357 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 436 (620)
..+.++++++.++. +|..+ .+++++|++++|.+....+..|..+++|++|++++|.++...+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 46788888888774 34433 3578888888888886666678888888888888888876655666778888888888
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCcccc
Q 043685 437 GNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEI 516 (620)
Q Consensus 437 ~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 516 (620)
+|++.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 88887555566677788888888888887777777777888888888888776665556777788888888888887766
Q ss_pred chhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCC
Q 043685 517 PFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVP 565 (620)
Q Consensus 517 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 565 (620)
+..|..+++|+.|++++|++++..+..|..+++|+.|++++|++....+
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 6677777888888888888776666667777778888888887776554
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=2.1e-27 Score=258.43 Aligned_cols=235 Identities=13% Similarity=0.115 Sum_probs=166.4
Q ss_pred ccccccccCCCcee-ecCCCccccccCcccCCCCCCCEEECCCCcccCccC-ccccCCCCCcEEECCCCcccc-CCCccc
Q 043685 324 IPTSLRNCTSLIRV-RLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEIS-SNWGKCPKLGTLNVSMNNITG-GIPREI 400 (620)
Q Consensus 324 ~~~~l~~l~~L~~L-~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~-~~~~~~ 400 (620)
++..+.++++|+.+ .+.+.... ..+..+..+++|++|++++|.+++... ..+..+++|++|++++| +.. ..+...
T Consensus 257 l~~~l~~~~~L~~Ls~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~ 334 (594)
T 2p1m_B 257 LSVALSGCKELRCLSGFWDAVPA-YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLA 334 (594)
T ss_dssp HHHHHHTCTTCCEEECCBTCCGG-GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHH
T ss_pred HHHHHhcCCCcccccCCcccchh-hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHH
Confidence 33456778888888 44333221 223334467899999999998765422 23568899999999998 432 222233
Q ss_pred cCCCCCCEEecCC---------CeecccCChhh-hccCCCcEEEccCCcccccCCcccc-CCCCCCEEEcc--C----Cc
Q 043685 401 GNSSQLQALDLSL---------NQIVGDIPKEL-GKSNSLTKLILRGNQLTGRLPTEIG-SLIKLEYLDFS--A----NR 463 (620)
Q Consensus 401 ~~l~~L~~L~l~~---------n~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~ls--~----n~ 463 (620)
..+++|++|++.+ +.+++.....+ ..+++|++|.+..+.+++.....+. .+++|++|+++ + +.
T Consensus 335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 414 (594)
T 2p1m_B 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY 414 (594)
T ss_dssp HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence 4589999999933 44543322333 3589999999988888754444443 58999999999 4 45
Q ss_pred CCc-----chhhhhhCCCCCCEecCcCCcCcccchhHhhh-ccCCCEEeCCCCcCccccchhc-cCCCCCCEEECCCCcC
Q 043685 464 FNN-----SVPEILGNLLKLHYLGLSNNQFVQELPKELEK-LVQLSLLDASHNLFGGEIPFQI-CSLKSLEMLNLSHNNL 536 (620)
Q Consensus 464 l~~-----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l 536 (620)
+++ .++..+..+++|++|++++ .+.+..+..+.. +++|+.|++++|.+++.....+ ..+++|+.|++++|++
T Consensus 415 l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 415 LTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp TTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred ccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 552 2334467889999999987 666655555554 8999999999999987655555 6789999999999999
Q ss_pred ccccCc-cccCCCCCCEEEccCCcCc
Q 043685 537 SGSIPN-CFDGMHGLSVIDISDNQLQ 561 (620)
Q Consensus 537 ~~~~~~-~~~~l~~L~~L~l~~N~l~ 561 (620)
+..... ....+++|++|++++|+++
T Consensus 494 ~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 494 GDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred cHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 654443 3456899999999999984
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=6.7e-23 Score=219.83 Aligned_cols=260 Identities=24% Similarity=0.258 Sum_probs=162.7
Q ss_pred CCeeeccCCcCCCCCCCCCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCceeecCCC
Q 043685 263 LERLGLMDNHLSGSIPPSLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGN 342 (620)
Q Consensus 263 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 342 (620)
++.|+++++.+. .+|..+. ++++.|++++|.++. +|. .+++|++|++++|.++ .+|. .+++|++|++++|
T Consensus 42 l~~L~ls~n~L~-~lp~~l~-~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC-TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSC
T ss_pred CcEEEecCCCcC-ccChhhC-CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCC
Confidence 444555555444 3333322 455555555555542 222 3456666666666665 3443 4567777777777
Q ss_pred ccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCCh
Q 043685 343 NLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPK 422 (620)
Q Consensus 343 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 422 (620)
.+++... .+++|+.|++++|.++.. +. .+++|++|++++|.+++. +. .+++|+.|++++|.+++ +|
T Consensus 112 ~l~~l~~----~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~- 177 (622)
T 3g06_A 112 PLTHLPA----LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP- 177 (622)
T ss_dssp CCCCCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC-
T ss_pred cCCCCCC----CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc-
Confidence 7665433 456777777777776643 22 246777777777777632 32 24567777777777764 33
Q ss_pred hhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCC
Q 043685 423 ELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQL 502 (620)
Q Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 502 (620)
..+++|+.|++++|.+++ +|. .+++|+.|++++|.++.. +. .+++|+.|++++|.+.+ +| ..+++|
T Consensus 178 --~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l-~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L 243 (622)
T 3g06_A 178 --MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTS-LP---VLPSEL 243 (622)
T ss_dssp --CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTC
T ss_pred --ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccccc-CC---CCCCCCEEEccCCccCc-CC---CCCCcC
Confidence 345677777777777763 433 236777777777777643 22 23677888888877754 34 355778
Q ss_pred CEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCC
Q 043685 503 SLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVP 565 (620)
Q Consensus 503 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 565 (620)
+.|++++|+++. +|. .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++.+|
T Consensus 244 ~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 244 KELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred cEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 888888887774 333 5677888888888877 557777778888888888888776554
No 77
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=2.1e-22 Score=216.05 Aligned_cols=266 Identities=26% Similarity=0.291 Sum_probs=178.2
Q ss_pred ecEEEccCCccccccCCCCCCCCCCCEEEccCCcCCCCCCCccccccccccccCCcccccCCCCCeeeccCCcCCCCCCC
Q 043685 200 LIDLKLSSNQLTGYIPYSLGNVTSLSSLLLAKNKLYGSLPPFVDLSINQFRGFLPPFVGNLTNLERLGLMDNHLSGSIPP 279 (620)
Q Consensus 200 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 279 (620)
++.|+++++.++ .+|..+. ++|+.|++++|.++ .++. .+++|++|++++|.+.+ +
T Consensus 42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~----------------~lp~---~l~~L~~L~Ls~N~l~~-l-- 96 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT----------------SLPA---LPPELRTLEVSGNQLTS-L-- 96 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS----------------CCCC---CCTTCCEEEECSCCCSC-C--
T ss_pred CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC----------------CCCC---cCCCCCEEEcCCCcCCc-C--
Confidence 556666666666 3444333 66666666666553 1222 24556666666665542 2
Q ss_pred CCCCCCcCeEEecCCcccccCCCCccCCCCccEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCC
Q 043685 280 SLGNSTLTWLTFSLNHFTGYLPHDICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLT 359 (620)
Q Consensus 280 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~ 359 (620)
|. .+++|++|++++|.+.+ +|. .+++|+.|++++|.++.... .+++|+
T Consensus 97 ---------------------p~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~----~l~~L~ 144 (622)
T 3g06_A 97 ---------------------PV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPV----LPPGLQ 144 (622)
T ss_dssp ---------------------CC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSCCCC----CCTTCC
T ss_pred ---------------------CC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCcCCC----CCCCCC
Confidence 22 34566666666666553 333 35677777777777765432 247788
Q ss_pred EEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCc
Q 043685 360 FIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQ 439 (620)
Q Consensus 360 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 439 (620)
+|++++|.+++. +. .+++|+.|++++|.++. ++ ..+++|+.|++++|.+++ +|. .+++|+.|++++|.
T Consensus 145 ~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~ 212 (622)
T 3g06_A 145 ELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNR 212 (622)
T ss_dssp EEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred EEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCc
Confidence 888888877753 22 35678888888888874 34 346788888888888874 333 24678888888888
Q ss_pred ccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchh
Q 043685 440 LTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQ 519 (620)
Q Consensus 440 l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 519 (620)
++ .+|. .+++|++|++++|.+++. | ..+++|++|++++|.+. .+|. .+++|+.|++++|+++ .+|..
T Consensus 213 l~-~l~~---~~~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~ 279 (622)
T 3g06_A 213 LT-SLPA---LPSGLKELIVSGNRLTSL-P---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPES 279 (622)
T ss_dssp CS-SCCC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGG
T ss_pred cc-ccCC---CCCCCCEEEccCCccCcC-C---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHH
Confidence 87 4443 247788888888888753 3 45678888888888886 4444 5678888999999888 56777
Q ss_pred ccCCCCCCEEECCCCcCccccCccccCC
Q 043685 520 ICSLKSLEMLNLSHNNLSGSIPNCFDGM 547 (620)
Q Consensus 520 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l 547 (620)
+..+++|+.|++++|++++..|..+..+
T Consensus 280 l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 280 LIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp GGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred HhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 8888889999999998887777666544
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=9.4e-23 Score=199.40 Aligned_cols=203 Identities=26% Similarity=0.205 Sum_probs=139.6
Q ss_pred ccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCC
Q 043685 328 LRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQ 407 (620)
Q Consensus 328 l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 407 (620)
+.++++++++++.++.++..+... .++++.|++++|.+.+..+..|.++++|++|++++|.++...+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 445667777777777776543322 2567777777777776666677777777777777777764332 25677777
Q ss_pred EEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCc
Q 043685 408 ALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQ 487 (620)
Q Consensus 408 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~ 487 (620)
+|++++|++. .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 7777777776 555566677777777777777775555667777777777777777776666666777777777777777
Q ss_pred CcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCc
Q 043685 488 FVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLS 537 (620)
Q Consensus 488 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 537 (620)
+....+..|..+++|+.|++++|+++ .+|..+....+|+.|++++|++.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 76555555667777777777777777 44555556667777777777764
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=2.3e-23 Score=202.22 Aligned_cols=224 Identities=21% Similarity=0.189 Sum_probs=177.6
Q ss_pred cCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEe
Q 043685 331 CTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALD 410 (620)
Q Consensus 331 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 410 (620)
+..+..+.+..+.+... .....+++|+.|++++|.+... ..+..+++|++|++++|.+.+. ..+..+++|++|+
T Consensus 18 ~~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEE
T ss_pred HHHHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEE
Confidence 34555666666655533 2345677888888888877643 3467788888888888888743 3677888888888
Q ss_pred cCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcc
Q 043685 411 LSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQ 490 (620)
Q Consensus 411 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 490 (620)
+++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence 88888887777777888888899998888886666667888889999999998887777778888899999999998887
Q ss_pred cchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCC
Q 043685 491 ELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNS 567 (620)
Q Consensus 491 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 567 (620)
..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+ .++.|+.++++.|.+++.+|..
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCc
Confidence 777777888999999999999988887778889999999999998763 3567888899999998888753
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=9.4e-24 Score=214.09 Aligned_cols=251 Identities=19% Similarity=0.199 Sum_probs=182.4
Q ss_pred EEecCccccccccccccccCCCceeecCCCccccccC----cccCCCC-CCCEEECCCCcccCccCccccCC-----CCC
Q 043685 313 FIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNIS----EALGIYP-NLTFIDLSRNNFYGEISSNWGKC-----PKL 382 (620)
Q Consensus 313 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~-----~~L 382 (620)
+.++.+.+.+.+|..+...++|++|++++|.+..... ..+..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4556666666666666666668888888888876655 5667777 88888888888887666555543 888
Q ss_pred cEEECCCCccccCCCcc----ccCC-CCCCEEecCCCeecccCChhhhc-----cCCCcEEEccCCcccccC----Cccc
Q 043685 383 GTLNVSMNNITGGIPRE----IGNS-SQLQALDLSLNQIVGDIPKELGK-----SNSLTKLILRGNQLTGRL----PTEI 448 (620)
Q Consensus 383 ~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~l~~n~~~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~----~~~~ 448 (620)
++|++++|.++...+.. +..+ ++|++|++++|.+++..+..+.. .++|++|++++|++++.. +..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 99999988887554442 3444 78999999999887655544433 358999999999887433 3334
Q ss_pred cCCC-CCCEEEccCCcCCcchhhh----hhCC-CCCCEecCcCCcCccc----chhHhhh-ccCCCEEeCCCCcCccccc
Q 043685 449 GSLI-KLEYLDFSANRFNNSVPEI----LGNL-LKLHYLGLSNNQFVQE----LPKELEK-LVQLSLLDASHNLFGGEIP 517 (620)
Q Consensus 449 ~~~~-~L~~L~ls~n~l~~~~~~~----l~~l-~~L~~L~l~~n~l~~~----~~~~l~~-l~~L~~L~l~~n~l~~~~~ 517 (620)
...+ +|++|++++|.+++..+.. +..+ ++|++|++++|.+.+. ++..+.. .++|+.|++++|.+++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 4554 8999999999987765543 4445 5899999999988663 4455555 3589999999999886544
Q ss_pred ----hhccCCCCCCEEECCCCcCccc-------cCccccCCCCCCEEEccCCcCccC
Q 043685 518 ----FQICSLKSLEMLNLSHNNLSGS-------IPNCFDGMHGLSVIDISDNQLQGP 563 (620)
Q Consensus 518 ----~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~N~l~~~ 563 (620)
..+..+++|+.|++++|.+..+ ++..+..+++|++||+++|++...
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3356778999999999985433 334677888899999999998765
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=1.7e-22 Score=196.07 Aligned_cols=210 Identities=20% Similarity=0.203 Sum_probs=174.9
Q ss_pred ccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCC
Q 043685 328 LRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQ 407 (620)
Q Consensus 328 l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 407 (620)
...+++|+.|++.++.+... ..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 44567888888888887643 3477788899999998888764 4677888999999999988877777788889999
Q ss_pred EEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCc
Q 043685 408 ALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQ 487 (620)
Q Consensus 408 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~ 487 (620)
+|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 99999999887777778888999999999999886666667889999999999999988777778889999999999999
Q ss_pred CcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCC
Q 043685 488 FVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMH 548 (620)
Q Consensus 488 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 548 (620)
+.+..+..+..+++|+.|++++|.+.+ .+++|+.|++..|.+++.+|..+..++
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 988777778899999999999998773 356788999999999999888776543
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.3e-23 Score=215.41 Aligned_cols=243 Identities=20% Similarity=0.236 Sum_probs=181.2
Q ss_pred cccccccccCCCceeecCCCccccccC----cccCCCCCCCEEECCCCcc---cCccCccc-------cCCCCCcEEECC
Q 043685 323 TIPTSLRNCTSLIRVRLDGNNLTGNIS----EALGIYPNLTFIDLSRNNF---YGEISSNW-------GKCPKLGTLNVS 388 (620)
Q Consensus 323 ~~~~~l~~l~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~l~~n~l---~~~~~~~~-------~~~~~L~~L~l~ 388 (620)
.++..+..+++|++|++++|.+....+ ..+..+++|+.|++++|.+ .+.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 345556667788888888887765422 3466788888888888643 33334333 678889999999
Q ss_pred CCcccc----CCCccccCCCCCCEEecCCCeecccCChhh----hcc---------CCCcEEEccCCccc-ccCC---cc
Q 043685 389 MNNITG----GIPREIGNSSQLQALDLSLNQIVGDIPKEL----GKS---------NSLTKLILRGNQLT-GRLP---TE 447 (620)
Q Consensus 389 ~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~----~~l---------~~L~~L~l~~n~l~-~~~~---~~ 447 (620)
+|.+.. .++..+..+++|++|++++|.++...+..+ ..+ ++|++|++++|+++ ..++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 998875 355567788899999999998864433333 334 88999999999886 2333 35
Q ss_pred ccCCCCCCEEEccCCcCCc-----chhhhhhCCCCCCEecCcCCcCc----ccchhHhhhccCCCEEeCCCCcCccc---
Q 043685 448 IGSLIKLEYLDFSANRFNN-----SVPEILGNLLKLHYLGLSNNQFV----QELPKELEKLVQLSLLDASHNLFGGE--- 515 (620)
Q Consensus 448 ~~~~~~L~~L~ls~n~l~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~l~~n~l~~~--- 515 (620)
+..+++|++|++++|.++. ..+..+..+++|++|++++|.+. ..+|..+..+++|+.|++++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 6678899999999998873 23336778899999999999985 55677788889999999999998865
Q ss_pred -cchhccC--CCCCCEEECCCCcCcc----ccCccc-cCCCCCCEEEccCCcCccCCC
Q 043685 516 -IPFQICS--LKSLEMLNLSHNNLSG----SIPNCF-DGMHGLSVIDISDNQLQGPVP 565 (620)
Q Consensus 516 -~~~~~~~--l~~L~~L~l~~n~l~~----~~~~~~-~~l~~L~~L~l~~N~l~~~~~ 565 (620)
++..+.. +++|+.|++++|.++. .+|..+ ..+++|++|++++|++++..+
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 4555533 8899999999999987 366665 567999999999999986654
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=7.5e-23 Score=205.65 Aligned_cols=202 Identities=17% Similarity=0.187 Sum_probs=92.8
Q ss_pred CCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCc-cCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEe
Q 043685 332 TSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGE-ISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALD 410 (620)
Q Consensus 332 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 410 (620)
+.++.+++.+|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4555555555554443332 23445555555555554433 333444455555555555554433344444455555555
Q ss_pred cCCC-eeccc-CChhhhccCCCcEEEccCC-ccccc-CCccccCCC-CCCEEEccCC--cCC-cchhhhhhCCCCCCEec
Q 043685 411 LSLN-QIVGD-IPKELGKSNSLTKLILRGN-QLTGR-LPTEIGSLI-KLEYLDFSAN--RFN-NSVPEILGNLLKLHYLG 482 (620)
Q Consensus 411 l~~n-~~~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~-~L~~L~ls~n--~l~-~~~~~~l~~l~~L~~L~ 482 (620)
+++| .+++. .+..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 5555 33321 3333444555555555555 44422 233344444 5555555555 232 22334444455555555
Q ss_pred CcCCc-CcccchhHhhhccCCCEEeCCCCc-CccccchhccCCCCCCEEECCCC
Q 043685 483 LSNNQ-FVQELPKELEKLVQLSLLDASHNL-FGGEIPFQICSLKSLEMLNLSHN 534 (620)
Q Consensus 483 l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 534 (620)
+++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++|
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 55554 333334444455555555555552 22111123444555555555554
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=5.2e-22 Score=188.87 Aligned_cols=196 Identities=14% Similarity=0.142 Sum_probs=116.0
Q ss_pred CCCEEECCCCcccCccCccccCCCCCcEEECCCCc-cccCCCccccCCCCCCEEecCC-CeecccCChhhhccCCCcEEE
Q 043685 357 NLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNN-ITGGIPREIGNSSQLQALDLSL-NQIVGDIPKELGKSNSLTKLI 434 (620)
Q Consensus 357 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~ 434 (620)
+|++|++++|++++..+..|.++++|++|++++|. ++...+..|..+++|++|++++ |.+++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666665555566666666666666665 5544444566666666666666 666655555566666666666
Q ss_pred ccCCcccccCCccccCCCCCC---EEEccCC-cCCcchhhhhhCCCCCC-EecCcCCcCcccchhHhhhccCCCEEeCCC
Q 043685 435 LRGNQLTGRLPTEIGSLIKLE---YLDFSAN-RFNNSVPEILGNLLKLH-YLGLSNNQFVQELPKELEKLVQLSLLDASH 509 (620)
Q Consensus 435 l~~n~l~~~~~~~~~~~~~L~---~L~ls~n-~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 509 (620)
+++|++++ +|. +..+++|+ +|++++| .+++..+..|..+++|+ +|++++|.+....+..+.. ++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 66666663 443 55556665 6666666 66555555566666666 6666666665333333333 5666666666
Q ss_pred Cc-CccccchhccCC-CCCCEEECCCCcCccccCccccCCCCCCEEEccCC
Q 043685 510 NL-FGGEIPFQICSL-KSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDN 558 (620)
Q Consensus 510 n~-l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 558 (620)
|+ +++..+..|..+ ++|+.|++++|+++.+.+. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 63 655555556666 6666666666666533222 3455666666554
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=3e-21 Score=184.93 Aligned_cols=181 Identities=22% Similarity=0.214 Sum_probs=132.9
Q ss_pred CcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccC
Q 043685 382 LGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSA 461 (620)
Q Consensus 382 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~ 461 (620)
.++++++++.++ .+|..+. +.+++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 455666666655 3333332 4666777777766666666666677777777777777665566667777777777777
Q ss_pred CcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccC
Q 043685 462 NRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIP 541 (620)
Q Consensus 462 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 541 (620)
|.+++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|++++..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 77776666677777888888888888876666667788888888888888887777778888888888888888887777
Q ss_pred ccccCCCCCCEEEccCCcCccCCC
Q 043685 542 NCFDGMHGLSVIDISDNQLQGPVP 565 (620)
Q Consensus 542 ~~~~~l~~L~~L~l~~N~l~~~~~ 565 (620)
..|..+++|++|++++|++.+...
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTTST
T ss_pred HHHhCCCCCCEEEeeCCceeCCcc
Confidence 788888888888888888886633
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=8.3e-22 Score=195.25 Aligned_cols=201 Identities=22% Similarity=0.199 Sum_probs=140.4
Q ss_pred CCCCcEEECCCCccccCCCccc--cCCCCCCEEecCCCeecccCC----hhhhccCCCcEEEccCCcccccCCccccCCC
Q 043685 379 CPKLGTLNVSMNNITGGIPREI--GNSSQLQALDLSLNQIVGDIP----KELGKSNSLTKLILRGNQLTGRLPTEIGSLI 452 (620)
Q Consensus 379 ~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 452 (620)
+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|++.+..+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3457777777777666655555 667777777777777665333 2334577888888888888766667777888
Q ss_pred CCCEEEccCCcCCcc--h--hhhhhCCCCCCEecCcCCcCcccchh----HhhhccCCCEEeCCCCcCccccchhccCC-
Q 043685 453 KLEYLDFSANRFNNS--V--PEILGNLLKLHYLGLSNNQFVQELPK----ELEKLVQLSLLDASHNLFGGEIPFQICSL- 523 (620)
Q Consensus 453 ~L~~L~ls~n~l~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l~~~~~~~~~~l- 523 (620)
+|++|++++|++.+. . +..+..+++|++|++++|.++. ++. .+..+++|++|++++|++++..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 888888888876542 1 1223567788888888888753 222 24677888888888888887766666655
Q ss_pred --CCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCCcccCCCCccccCCCCCC
Q 043685 524 --KSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKGL 584 (620)
Q Consensus 524 --~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~Np~~ 584 (620)
++|++|++++|+++ .+|..+. ++|++|++++|++++. |....+++++.+++.+|++.
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTS
T ss_pred CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCC
Confidence 68888888888888 4565543 6888888888888864 33455778888888888764
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=2.6e-21 Score=185.36 Aligned_cols=180 Identities=23% Similarity=0.277 Sum_probs=162.5
Q ss_pred CCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecC
Q 043685 404 SQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGL 483 (620)
Q Consensus 404 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l 483 (620)
...++++++++.++ .+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 35678999999988 5555443 68999999999999888888999999999999999999988888999999999999
Q ss_pred cCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccC
Q 043685 484 SNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGP 563 (620)
Q Consensus 484 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 563 (620)
++|.+.+..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|+++++.+..|..+++|++|++++|++++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99999887778899999999999999999988888889999999999999999988888899999999999999999987
Q ss_pred CCCC-cccCCCCccccCCCCCCCC
Q 043685 564 VPNS-TAFRNAPVEALEGNKGLCG 586 (620)
Q Consensus 564 ~~~~-~~~~~l~~~~l~~Np~~C~ 586 (620)
.+.. ..+++++.+++.+|||.|+
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 7643 4578999999999999997
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=8.2e-22 Score=187.53 Aligned_cols=199 Identities=16% Similarity=0.207 Sum_probs=173.5
Q ss_pred CCCCcEEECCCCccccCCCccccCCCCCCEEecCCCe-ecccCChhhhccCCCcEEEccC-CcccccCCccccCCCCCCE
Q 043685 379 CPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQ-IVGDIPKELGKSNSLTKLILRG-NQLTGRLPTEIGSLIKLEY 456 (620)
Q Consensus 379 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~ 456 (620)
.++|++|++++|.+++..+..|..+++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|..+++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 3489999999999997777789999999999999997 8877777899999999999999 9999666678899999999
Q ss_pred EEccCCcCCcchhhhhhCCCCCC---EecCcCC-cCcccchhHhhhccCCC-EEeCCCCcCccccchhccCCCCCCEEEC
Q 043685 457 LDFSANRFNNSVPEILGNLLKLH---YLGLSNN-QFVQELPKELEKLVQLS-LLDASHNLFGGEIPFQICSLKSLEMLNL 531 (620)
Q Consensus 457 L~ls~n~l~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l 531 (620)
|++++|.+++ +|. +..+++|+ +|++++| .+.+..+..|.++++|+ .|++++|+++...+..|.. ++|+.|++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence 9999999986 444 88888998 9999999 89877777899999999 9999999999655556655 89999999
Q ss_pred CCCc-CccccCccccCC-CCCCEEEccCCcCccCCCCCcccCCCCccccCCCC
Q 043685 532 SHNN-LSGSIPNCFDGM-HGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNK 582 (620)
Q Consensus 532 ~~n~-l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~Np 582 (620)
++|+ ++.+.+..|..+ ++|+.|++++|++++..+. .+++++.+.+.+++
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 9995 997778889999 9999999999999965443 68888888888764
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=5.3e-21 Score=188.89 Aligned_cols=193 Identities=24% Similarity=0.328 Sum_probs=114.3
Q ss_pred CCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEE
Q 043685 354 IYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKL 433 (620)
Q Consensus 354 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 433 (620)
.+++|+.|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|++.+. ..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 345555555555555432 2 34555566666666665553322 55566666666666665532 245556666666
Q ss_pred EccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCc
Q 043685 434 ILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFG 513 (620)
Q Consensus 434 ~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 513 (620)
++++|++++ ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|+++
T Consensus 113 ~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 666666653 22 25666666666666666654433 5566666666666666654322 666667777777777666
Q ss_pred cccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCcc
Q 043685 514 GEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQG 562 (620)
Q Consensus 514 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 562 (620)
+..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 4433 5666677777777777665442 5666777777777777664
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1e-21 Score=194.66 Aligned_cols=203 Identities=17% Similarity=0.177 Sum_probs=154.4
Q ss_pred CCCCCEEECCCCcccCccCccc--cCCCCCcEEECCCCccccCCC----ccccCCCCCCEEecCCCeecccCChhhhccC
Q 043685 355 YPNLTFIDLSRNNFYGEISSNW--GKCPKLGTLNVSMNNITGGIP----REIGNSSQLQALDLSLNQIVGDIPKELGKSN 428 (620)
Q Consensus 355 l~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 428 (620)
+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3457777777777776666666 677777777777777765333 2334677888888888888777777778888
Q ss_pred CCcEEEccCCccccc--C--CccccCCCCCCEEEccCCcCCcchh--h-hhhCCCCCCEecCcCCcCcccchhHhhhc--
Q 043685 429 SLTKLILRGNQLTGR--L--PTEIGSLIKLEYLDFSANRFNNSVP--E-ILGNLLKLHYLGLSNNQFVQELPKELEKL-- 499 (620)
Q Consensus 429 ~L~~L~l~~n~l~~~--~--~~~~~~~~~L~~L~ls~n~l~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l-- 499 (620)
+|++|++++|++.+. + +..+..+++|++|++++|.++.... . .+..+++|++|++++|.+.+..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 888888888886532 1 2234678899999999999864322 1 35778999999999999987767666666
Q ss_pred -cCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCcc
Q 043685 500 -VQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQG 562 (620)
Q Consensus 500 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 562 (620)
++|+.|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|+.|++++|+++.
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 69999999999999 5566553 7999999999999965 43 6788999999999999974
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=1.8e-22 Score=204.66 Aligned_cols=251 Identities=21% Similarity=0.237 Sum_probs=196.1
Q ss_pred eeecCCCccccccCcccCCCCCCCEEECCCCcccCccC----ccccCCC-CCcEEECCCCccccCCCccccCC-----CC
Q 043685 336 RVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEIS----SNWGKCP-KLGTLNVSMNNITGGIPREIGNS-----SQ 405 (620)
Q Consensus 336 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l-----~~ 405 (620)
.+.++.+.+++..+..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+....+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35678888888777777777789999999999987766 6778888 99999999999987666555554 89
Q ss_pred CCEEecCCCeecccCChhhhc----c-CCCcEEEccCCcccccCCcc----ccC-CCCCCEEEccCCcCCcc----hhhh
Q 043685 406 LQALDLSLNQIVGDIPKELGK----S-NSLTKLILRGNQLTGRLPTE----IGS-LIKLEYLDFSANRFNNS----VPEI 471 (620)
Q Consensus 406 L~~L~l~~n~~~~~~~~~~~~----l-~~L~~L~l~~n~l~~~~~~~----~~~-~~~L~~L~ls~n~l~~~----~~~~ 471 (620)
|++|++++|.+++..+..+.. + ++|++|++++|++++..+.. +.. .++|++|++++|.+++. ++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999998766654443 4 89999999999998655443 333 36999999999999864 3445
Q ss_pred hhCCC-CCCEecCcCCcCcccchhHhh----hc-cCCCEEeCCCCcCccc----cchhccC-CCCCCEEECCCCcCcccc
Q 043685 472 LGNLL-KLHYLGLSNNQFVQELPKELE----KL-VQLSLLDASHNLFGGE----IPFQICS-LKSLEMLNLSHNNLSGSI 540 (620)
Q Consensus 472 l~~l~-~L~~L~l~~n~l~~~~~~~l~----~l-~~L~~L~l~~n~l~~~----~~~~~~~-l~~L~~L~l~~n~l~~~~ 540 (620)
+...+ +|++|++++|.+.+..+..+. .+ ++|+.|++++|.+++. ++..+.. .++|++|++++|.++...
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 56665 999999999999877665544 44 6999999999999863 3445554 469999999999998764
Q ss_pred C----ccccCCCCCCEEEccCCcCccCCCC--------CcccCCCCccccCCCCCCCC
Q 043685 541 P----NCFDGMHGLSVIDISDNQLQGPVPN--------STAFRNAPVEALEGNKGLCG 586 (620)
Q Consensus 541 ~----~~~~~l~~L~~L~l~~N~l~~~~~~--------~~~~~~l~~~~l~~Np~~C~ 586 (620)
+ ..+..+++|++|++++|++....+. ....++++.+++.+|+....
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 4 4457789999999999995543332 22355678899999987654
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=1.4e-22 Score=207.50 Aligned_cols=258 Identities=16% Similarity=0.156 Sum_probs=193.7
Q ss_pred CCCCccCCCCccEEEecCccccccc----cccccccCCCceeecCCCccc---cccCcc-------cCCCCCCCEEECCC
Q 043685 300 LPHDICRGGALEIFIVDEYRFQGTI----PTSLRNCTSLIRVRLDGNNLT---GNISEA-------LGIYPNLTFIDLSR 365 (620)
Q Consensus 300 ~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~l~---~~~~~~-------~~~l~~L~~L~l~~ 365 (620)
++..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+. +..+.. +..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 3445556777888888888776543 334667888999988886443 222222 46789999999999
Q ss_pred CcccC----ccCccccCCCCCcEEECCCCccccCCCcc----ccCC---------CCCCEEecCCCeecc-cCC---hhh
Q 043685 366 NNFYG----EISSNWGKCPKLGTLNVSMNNITGGIPRE----IGNS---------SQLQALDLSLNQIVG-DIP---KEL 424 (620)
Q Consensus 366 n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l---------~~L~~L~l~~n~~~~-~~~---~~~ 424 (620)
|.+.+ .++..+..+++|++|++++|.+....+.. +..+ ++|++|++++|+++. ..+ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 99987 35667788999999999999986433323 3333 899999999999873 333 456
Q ss_pred hccCCCcEEEccCCcccc-----cCCccccCCCCCCEEEccCCcCC----cchhhhhhCCCCCCEecCcCCcCccc----
Q 043685 425 GKSNSLTKLILRGNQLTG-----RLPTEIGSLIKLEYLDFSANRFN----NSVPEILGNLLKLHYLGLSNNQFVQE---- 491 (620)
Q Consensus 425 ~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~ls~n~l~----~~~~~~l~~l~~L~~L~l~~n~l~~~---- 491 (620)
..+++|++|++++|+++. ..+..+..+++|++|++++|.++ ..++..+..+++|++|++++|.+.+.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 788999999999999872 23447788999999999999996 45778889999999999999999765
Q ss_pred chhHhhh--ccCCCEEeCCCCcCcc----ccchhc-cCCCCCCEEECCCCcCccccC--ccc-cCCCCCCEEEccC
Q 043685 492 LPKELEK--LVQLSLLDASHNLFGG----EIPFQI-CSLKSLEMLNLSHNNLSGSIP--NCF-DGMHGLSVIDISD 557 (620)
Q Consensus 492 ~~~~l~~--l~~L~~L~l~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~l~~~~~--~~~-~~l~~L~~L~l~~ 557 (620)
++..+.. +++|+.|++++|.+++ .++..+ ..+++|+.|++++|++++..+ ..+ ..++.++.+++..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 4556644 8999999999999997 366666 568999999999999987653 222 2234444444543
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1.6e-21 Score=195.91 Aligned_cols=245 Identities=18% Similarity=0.188 Sum_probs=197.4
Q ss_pred CCceeecCCCccccccCcccCCC--CCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccC-CCccccCCCCCCEE
Q 043685 333 SLIRVRLDGNNLTGNISEALGIY--PNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGG-IPREIGNSSQLQAL 409 (620)
Q Consensus 333 ~L~~L~l~~~~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L 409 (620)
.++.++++++.+. +..+..+ ++++.+++++|.+.+..+. +..+++|++|++++|.+... .+..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4678888887765 2334455 7899999999999877665 45799999999999998754 66778899999999
Q ss_pred ecCCCeecccCChhhhccCCCcEEEccCC-ccccc-CCccccCCCCCCEEEccCC-cCCcc-hhhhhhCCC-CCCEecCc
Q 043685 410 DLSLNQIVGDIPKELGKSNSLTKLILRGN-QLTGR-LPTEIGSLIKLEYLDFSAN-RFNNS-VPEILGNLL-KLHYLGLS 484 (620)
Q Consensus 410 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~~L~~L~ls~n-~l~~~-~~~~l~~l~-~L~~L~l~ 484 (620)
++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. .+..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 99999998878888899999999999999 67642 5666788999999999999 88764 577788999 99999999
Q ss_pred CC--cCc-ccchhHhhhccCCCEEeCCCCc-CccccchhccCCCCCCEEECCCCc-CccccCccccCCCCCCEEEccCCc
Q 043685 485 NN--QFV-QELPKELEKLVQLSLLDASHNL-FGGEIPFQICSLKSLEMLNLSHNN-LSGSIPNCFDGMHGLSVIDISDNQ 559 (620)
Q Consensus 485 ~n--~l~-~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 559 (620)
+| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 99 555 4567778899999999999999 777778889999999999999996 33332236788999999999999
Q ss_pred CccCCCCCccc-CCCCccccCCCCCC
Q 043685 560 LQGPVPNSTAF-RNAPVEALEGNKGL 584 (620)
Q Consensus 560 l~~~~~~~~~~-~~l~~~~l~~Np~~ 584 (620)
++.. ....+ ..++.+.+.+|...
T Consensus 283 i~~~--~~~~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 283 VPDG--TLQLLKEALPHLQINCSHFT 306 (336)
T ss_dssp SCTT--CHHHHHHHSTTSEESCCCSC
T ss_pred cCHH--HHHHHHhhCcceEEecccCc
Confidence 3211 11123 34777788777653
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.4e-20 Score=185.88 Aligned_cols=195 Identities=23% Similarity=0.300 Sum_probs=163.1
Q ss_pred ccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCC
Q 043685 328 LRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQ 407 (620)
Q Consensus 328 l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 407 (620)
+..+++|++|++.+|.+.... .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 445788899999988887542 57788999999999998886654 88899999999999998753 3678899999
Q ss_pred EEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCc
Q 043685 408 ALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQ 487 (620)
Q Consensus 408 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~ 487 (620)
+|++++|.+++. + .+..+++|++|++++|++++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 999999998753 3 38889999999999999984433 7889999999999999986544 8889999999999999
Q ss_pred CcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCcc
Q 043685 488 FVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSG 538 (620)
Q Consensus 488 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 538 (620)
+.+..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 976543 8899999999999999996653 8899999999999999974
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2.4e-19 Score=180.58 Aligned_cols=240 Identities=19% Similarity=0.148 Sum_probs=156.7
Q ss_pred cEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCcc-CccccCCCCCcE-EECC
Q 043685 311 EIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEI-SSNWGKCPKLGT-LNVS 388 (620)
Q Consensus 311 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~-L~l~ 388 (620)
++++.++++++ .+|..+ .+++++|++++|+++.+...+|..+++|++|+|++|++.+.+ +..|.+++++.+ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34555555555 455544 256777888888877777777777888888888888775543 345677777665 4455
Q ss_pred CCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccC-CcccccCCccccCCC-CCCEEEccCCcCCc
Q 043685 389 MNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRG-NQLTGRLPTEIGSLI-KLEYLDFSANRFNN 466 (620)
Q Consensus 389 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~-~L~~L~ls~n~l~~ 466 (620)
+|++....+..|..+++|++|++++|++....+..+....++..+++.+ +.+....+..|..+. .++.|++++|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 6777766677777788888888888877765555566666777777765 455533344455543 57778888888875
Q ss_pred chhhhhhCCCCCCEecCcC-CcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCcccc
Q 043685 467 SVPEILGNLLKLHYLGLSN-NQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFD 545 (620)
Q Consensus 467 ~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 545 (620)
..+..+ ...+|+++++.+ |.+....+..|.++++|+.|++++|+|+...+.. +.+|+.|.+.++.-...+| .+.
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTT
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cch
Confidence 444444 445778888765 4454333456778888888888888887554433 4455666655554333555 366
Q ss_pred CCCCCCEEEccCC
Q 043685 546 GMHGLSVIDISDN 558 (620)
Q Consensus 546 ~l~~L~~L~l~~N 558 (620)
.+++|+.++++++
T Consensus 244 ~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 244 KLVALMEASLTYP 256 (350)
T ss_dssp TCCSCCEEECSCH
T ss_pred hCcChhhCcCCCC
Confidence 7778888887654
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=1.8e-19 Score=168.44 Aligned_cols=156 Identities=21% Similarity=0.280 Sum_probs=118.2
Q ss_pred CEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCC
Q 043685 407 QALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNN 486 (620)
Q Consensus 407 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n 486 (620)
+.++++++.++ .+|..+. +++++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56777777776 4444333 57888888888887666667777888888888888887777777888888888888888
Q ss_pred cCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCC
Q 043685 487 QFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVP 565 (620)
Q Consensus 487 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 565 (620)
.+....+..|.++++|+.|++++|++++..+..|..+++|+.|++++|+++++.+..|..+++|+.|++++|++.+..+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 8876655667778888888888888887777778888888888888888877777777777888888888888775443
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=1.2e-19 Score=182.87 Aligned_cols=244 Identities=13% Similarity=0.054 Sum_probs=192.3
Q ss_pred ceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCC-CccccCCCCCCE-EecC
Q 043685 335 IRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGI-PREIGNSSQLQA-LDLS 412 (620)
Q Consensus 335 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~-L~l~ 412 (620)
++++.++++++.++.. + .+++++|+|++|+++.+.+..|.++++|++|++++|.+.+.+ +..|.+++++++ +.++
T Consensus 12 ~~v~C~~~~Lt~iP~~-l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSD-L--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTT-C--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcC-c--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 5677778888765433 2 468999999999999877788999999999999999986544 457889998876 5666
Q ss_pred CCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccC-CcCCcchhhhhhCCC-CCCEecCcCCcCcc
Q 043685 413 LNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSA-NRFNNSVPEILGNLL-KLHYLGLSNNQFVQ 490 (620)
Q Consensus 413 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~-n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~ 490 (620)
.|+++...+..|..+++|++|++++|++....+..+....++..+++.+ +.+....+..|..+. .++.|++++|.+..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 7899888888999999999999999999866666666777888999966 567666666676664 68999999999976
Q ss_pred cchhHhhhccCCCEEeCCC-CcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCCCcc
Q 043685 491 ELPKELEKLVQLSLLDASH-NLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNSTA 569 (620)
Q Consensus 491 ~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 569 (620)
..+..| ...+|+.|++.+ |.++.+.+.+|..+++|+.|++++|+|+.+.+..| ..|+.|.+.++.-...+|....
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~l~~ 244 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPTLEK 244 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCCTTT
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCCchh
Confidence 555444 457899999975 67776666789999999999999999996655544 5677777766655557777777
Q ss_pred cCCCCccccCCCCCCCC
Q 043685 570 FRNAPVEALEGNKGLCG 586 (620)
Q Consensus 570 ~~~l~~~~l~~Np~~C~ 586 (620)
+++++.+.+. +|+.|.
T Consensus 245 l~~L~~l~l~-~~~~c~ 260 (350)
T 4ay9_X 245 LVALMEASLT-YPSHCC 260 (350)
T ss_dssp CCSCCEEECS-CHHHHH
T ss_pred CcChhhCcCC-CCcccc
Confidence 8888888874 677774
No 98
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1.3e-19 Score=183.31 Aligned_cols=179 Identities=24% Similarity=0.236 Sum_probs=124.3
Q ss_pred cEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhh-ccCCCcEEEccCCcccccCCccccCCCCCCEEEccC
Q 043685 383 GTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELG-KSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSA 461 (620)
Q Consensus 383 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~ 461 (620)
+.++++++.++. +|..+ .+.++.|++++|.+++..+..+. .+++|++|++++|++++..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 577778777773 44443 23577888888887766666666 777788888888777766566677777777777777
Q ss_pred CcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhc---cCCCCCCEEECCCCcCcc
Q 043685 462 NRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQI---CSLKSLEMLNLSHNNLSG 538 (620)
Q Consensus 462 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~ 538 (620)
|.++...+..|..+++|++|++++|.+....+..|..+++|+.|+|++|++++..+..| ..+++|+.|+|++|+++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 77776666667777777777777777766666677777777777777777775554445 457777777777777775
Q ss_pred ccCccccCCCC--CCEEEccCCcCccCC
Q 043685 539 SIPNCFDGMHG--LSVIDISDNQLQGPV 564 (620)
Q Consensus 539 ~~~~~~~~l~~--L~~L~l~~N~l~~~~ 564 (620)
+.+..+..++. ++.|++++|++....
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred cCHHHhhhccHhhcceEEecCCCccCCc
Confidence 55556666655 366777777776543
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=7.1e-19 Score=164.41 Aligned_cols=157 Identities=20% Similarity=0.242 Sum_probs=136.2
Q ss_pred CEEecCCCeecccCChhhhccCCCcEEEccCCcccccCC-ccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcC
Q 043685 407 QALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLP-TEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSN 485 (620)
Q Consensus 407 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~ 485 (620)
+.+++++|.++ .+|..+ .+.+++|++++|++++..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 58999999887 455544 3467899999999986644 4578899999999999999888888899999999999999
Q ss_pred CcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCC
Q 043685 486 NQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVP 565 (620)
Q Consensus 486 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 565 (620)
|.+.+..+..|..+++|+.|++++|++++..|..|..+++|+.|++++|++++..|..|..+++|+.|++++|++.+..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99988888889999999999999999998888899999999999999999998888999999999999999999987766
Q ss_pred C
Q 043685 566 N 566 (620)
Q Consensus 566 ~ 566 (620)
.
T Consensus 171 l 171 (220)
T 2v70_A 171 L 171 (220)
T ss_dssp G
T ss_pred h
Confidence 4
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=2.1e-19 Score=168.01 Aligned_cols=153 Identities=22% Similarity=0.199 Sum_probs=106.9
Q ss_pred cEEECCCCccccCCCccccCCCCCCEEecCCCeecccCC-hhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccC
Q 043685 383 GTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIP-KELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSA 461 (620)
Q Consensus 383 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~ 461 (620)
+.+++++|.++. +|..+ .+.+++|++++|.+++..+ ..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 467777777763 34433 2345677777777765533 3466777777777777777755555677777777777777
Q ss_pred CcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCcc
Q 043685 462 NRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSG 538 (620)
Q Consensus 462 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 538 (620)
|.+++..+..|..+++|++|++++|.+.+..|..|..+++|+.|++++|++++..|..|..+++|+.|++++|++..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 77776666667777777777777777766666677777777777777777776667777777777777777777654
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=2.1e-19 Score=168.03 Aligned_cols=151 Identities=19% Similarity=0.262 Sum_probs=76.9
Q ss_pred EEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCc
Q 043685 384 TLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANR 463 (620)
Q Consensus 384 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~ 463 (620)
.++++++.++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|++++..+..|..+++|++|++++|.
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 4455555544 2232221 345555555555554444445555555555555555554444555555555555555555
Q ss_pred CCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCc
Q 043685 464 FNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLS 537 (620)
Q Consensus 464 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 537 (620)
++...+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|++.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 55444444455555555555555555444445555555555555555555444444555555555555555543
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.2e-18 Score=161.76 Aligned_cols=130 Identities=22% Similarity=0.257 Sum_probs=53.5
Q ss_pred CCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEcc
Q 043685 357 NLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILR 436 (620)
Q Consensus 357 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 436 (620)
+|++|++++|.+.+..+..|.++++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44555555554444444444444444444444444443333334444444444444444443333333344444444444
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCC
Q 043685 437 GNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNN 486 (620)
Q Consensus 437 ~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n 486 (620)
+|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 44443222222333333444444443333333333333333333333333
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=2.7e-18 Score=161.57 Aligned_cols=156 Identities=24% Similarity=0.286 Sum_probs=117.9
Q ss_pred CCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcC
Q 043685 406 LQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSN 485 (620)
Q Consensus 406 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~ 485 (620)
.+.++.+++.+. .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 456777777776 444433 26788888888888866677777888888888888888766666777788888888888
Q ss_pred CcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCC
Q 043685 486 NQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVP 565 (620)
Q Consensus 486 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 565 (620)
|.+.+..+..|..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..|..+++|+.|++++|++.+..+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 8887666666777888888888888887 556677778888888888888876666777778888888888888776554
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=7.5e-18 Score=156.32 Aligned_cols=132 Identities=29% Similarity=0.277 Sum_probs=85.7
Q ss_pred CCcEEEccCCcCCCcCcccccCCCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCCCCCcCCCCcccCCCCCCcEEEcc
Q 043685 104 SIEELFLYSNHLNESFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLY 183 (620)
Q Consensus 104 ~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 183 (620)
+|++|++++|.+++..+..|+++++|++|++++|.++...+..|..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444444444444445556666777777777776665444556666777777777776665555556667777777777
Q ss_pred cccccccCCCCCCcee-ecEEEccCCccccccCCCCCCCCCCCEEEccCCcCC
Q 043685 184 KNLLIGSIPSSLGNLK-LIDLKLSSNQLTGYIPYSLGNVTSLSSLLLAKNKLY 235 (620)
Q Consensus 184 ~n~~~~~~~~~l~~l~-L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 235 (620)
+|.+.+..+..+..+. |++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 7766655555566665 777777777777665556777888888888888764
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.8e-18 Score=167.80 Aligned_cols=190 Identities=22% Similarity=0.288 Sum_probs=98.0
Q ss_pred CCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecC
Q 043685 333 SLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLS 412 (620)
Q Consensus 333 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 412 (620)
.+..+.+..+.+.... .+..+++|+.|++++|.+... ..+..+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 25 ~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence 3444445554444321 233456666666666666543 235556666666666666653322 5555666666666
Q ss_pred CCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccc
Q 043685 413 LNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQEL 492 (620)
Q Consensus 413 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 492 (620)
+|.+.+ . ..+..+++|++|++++|++. +. ..+..+++|++|++++|.+.+.
T Consensus 99 ~n~l~~-~-~~l~~l~~L~~L~L~~n~i~------------------------~~--~~l~~l~~L~~L~l~~n~l~~~- 149 (291)
T 1h6t_A 99 ENKVKD-L-SSLKDLKKLKSLSLEHNGIS------------------------DI--NGLVHLPQLESLYLGNNKITDI- 149 (291)
T ss_dssp SSCCCC-G-GGGTTCTTCCEEECTTSCCC------------------------CC--GGGGGCTTCCEEECCSSCCCCC-
T ss_pred CCcCCC-C-hhhccCCCCCEEECCCCcCC------------------------CC--hhhcCCCCCCEEEccCCcCCcc-
Confidence 655543 1 12444455555555555444 32 2244445555555555555433
Q ss_pred hhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCcc
Q 043685 493 PKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQG 562 (620)
Q Consensus 493 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 562 (620)
..+..+++|+.|++++|++++..+ +..+++|+.|++++|.+++. + .+..+++|+.|++++|+++.
T Consensus 150 -~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 150 -TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred -hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 345555555555555555554433 55555555555555555543 2 25555566666666665553
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=1.7e-18 Score=175.18 Aligned_cols=176 Identities=22% Similarity=0.144 Sum_probs=150.8
Q ss_pred CEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCcccc-CCCCCCEEecCCCeecccCChhhhccCCCcEEEccC
Q 043685 359 TFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIG-NSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRG 437 (620)
Q Consensus 359 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 437 (620)
+.++++++.+.. +|..+ .+.++.|++++|.++...+..|. .+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 578999988885 44443 35689999999999977777777 899999999999999988888899999999999999
Q ss_pred CcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHh---hhccCCCEEeCCCCcCcc
Q 043685 438 NQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKEL---EKLVQLSLLDASHNLFGG 514 (620)
Q Consensus 438 n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~l~~n~l~~ 514 (620)
|++++..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+....+..| ..+++|+.|+|++|++++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99997767778999999999999999998888899999999999999999976555555 678999999999999997
Q ss_pred ccchhccCCCC--CCEEECCCCcCc
Q 043685 515 EIPFQICSLKS--LEMLNLSHNNLS 537 (620)
Q Consensus 515 ~~~~~~~~l~~--L~~L~l~~n~l~ 537 (620)
..+..+..++. ++.|++++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 77778888877 488999999986
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=5.4e-18 Score=179.51 Aligned_cols=185 Identities=26% Similarity=0.354 Sum_probs=96.4
Q ss_pred CCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecC
Q 043685 333 SLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLS 412 (620)
Q Consensus 333 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 412 (620)
+++.|++++|.+++++.. + +++|+.|++++|.++. +| ..+++|+.|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~-l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDN-L--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSC-C--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHh-H--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 566666666666553222 2 2556666666666653 33 235566666666666654 333 333 56666666
Q ss_pred CCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccc
Q 043685 413 LNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQEL 492 (620)
Q Consensus 413 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 492 (620)
+|.+++ +|. .+++|+.|++++|++++ +|. .+++|++|++++|.+++ +|. +. ++|++|++++|.+. .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 666654 333 45566666666666653 333 34556666666666554 333 33 55566666665554 33
Q ss_pred hhHhhhccCC-------CEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCcccc
Q 043685 493 PKELEKLVQL-------SLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFD 545 (620)
Q Consensus 493 ~~~l~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 545 (620)
|. +.. +| +.|++++|+|+ .+|..+..+++|+.|++++|++++..|..+.
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 33 322 44 55555555555 2344444455555555555555555544443
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.1e-17 Score=157.46 Aligned_cols=152 Identities=26% Similarity=0.261 Sum_probs=85.3
Q ss_pred CcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccC
Q 043685 382 LGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSA 461 (620)
Q Consensus 382 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~ 461 (620)
-+.++.+++.+. .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|++....+..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 345555555555 233322 24566666666666555555555566666666666665533334455556666666666
Q ss_pred CcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCc
Q 043685 462 NRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLS 537 (620)
Q Consensus 462 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 537 (620)
|.+++..+..|..+++|++|++++|.+. .+|..+..+++|+.|++++|++++..+..|..+++|+.|++++|++.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 6665555555555666666666666654 44455555666666666666665554455555666666666666554
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=1e-17 Score=163.76 Aligned_cols=172 Identities=24% Similarity=0.283 Sum_probs=130.1
Q ss_pred ccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCC
Q 043685 328 LRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQ 407 (620)
Q Consensus 328 l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 407 (620)
+..+++|+.|++++|.+... ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+... + .+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-h-hhccCCCCC
Confidence 45688999999999999865 347889999999999999987655 88999999999999999853 3 488999999
Q ss_pred EEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCc
Q 043685 408 ALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQ 487 (620)
Q Consensus 408 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~ 487 (620)
+|++++|.+.+. ..+..+++|++|++++|++++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 999999999853 4577888888888888888743 456667777777777777665443 5566666666666666
Q ss_pred CcccchhHhhhccCCCEEeCCCCcCc
Q 043685 488 FVQELPKELEKLVQLSLLDASHNLFG 513 (620)
Q Consensus 488 l~~~~~~~l~~l~~L~~L~l~~n~l~ 513 (620)
+.+. + .+..+++|+.|++++|+++
T Consensus 190 i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 190 ISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred CCCC-h-hhccCCCCCEEECcCCccc
Confidence 6432 2 2555556666666665554
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=1.1e-17 Score=177.03 Aligned_cols=181 Identities=28% Similarity=0.418 Sum_probs=105.8
Q ss_pred CCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEcc
Q 043685 357 NLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILR 436 (620)
Q Consensus 357 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 436 (620)
+++.|++++|.+++ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 56666666666665 33333 256666666666666 334 335666666666666664 444 333 66666666
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCcccc
Q 043685 437 GNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEI 516 (620)
Q Consensus 437 ~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 516 (620)
+|++++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+.+ +|. +. ++|+.|++++|+|+ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 666664 443 45666666666666654 232 35566666666666654 444 43 66666666666666 33
Q ss_pred chhccCCCCC-------CEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCC
Q 043685 517 PFQICSLKSL-------EMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVP 565 (620)
Q Consensus 517 ~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 565 (620)
|. +.. +| +.|++++|+|+ .+|..+..+++|+.|+|++|++++.+|
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 33 333 45 66666666666 345555556666666666666665544
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.3e-17 Score=178.79 Aligned_cols=192 Identities=23% Similarity=0.274 Sum_probs=120.8
Q ss_pred cCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEe
Q 043685 331 CTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALD 410 (620)
Q Consensus 331 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 410 (620)
+..+..+.+..+.+.... .+..+++|+.|++++|.+.... .+..+++|+.|+|++|.+.+..+ +..+++|+.|+
T Consensus 20 l~~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 345566666666655432 2456677788888877776442 46677777777777777765433 66777777777
Q ss_pred cCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcc
Q 043685 411 LSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQ 490 (620)
Q Consensus 411 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 490 (620)
+++|.+.+ ++ .+..+++|+.|++++|++.+ + ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+
T Consensus 94 Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 94 LDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred CcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 77777763 22 46666777777777776663 2 3456666666666666666544 445666666666666666654
Q ss_pred cchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCcc
Q 043685 491 ELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSG 538 (620)
Q Consensus 491 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 538 (620)
..| +..+++|+.|+|++|++++. ..+..+++|+.|+|++|++..
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred chh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 444 56666666666666666643 245566666666666666653
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=6.6e-18 Score=180.94 Aligned_cols=188 Identities=22% Similarity=0.256 Sum_probs=137.9
Q ss_pred EEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCc
Q 043685 312 IFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNN 391 (620)
Q Consensus 312 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 391 (620)
.+.+..+.+.+.. .+..+++|+.|++++|.+.... .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.
T Consensus 25 ~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 25 KDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred HHhccCCCccccc--chhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence 3444444444322 2456778888888888877542 47778888888888888876554 7778888888888888
Q ss_pred cccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhh
Q 043685 392 ITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEI 471 (620)
Q Consensus 392 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~ 471 (620)
+... + .+..+++|++|++++|.+.+. ..+..+++|+.|+|++|++.+. ..+..+++|+.|+|++|.+.+..+
T Consensus 99 l~~l-~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-- 170 (605)
T 1m9s_A 99 IKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-- 170 (605)
T ss_dssp CCCC-T-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--
T ss_pred CCCC-h-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--
Confidence 7742 3 577788888888888888743 3577788888888888888744 567778888888888888876655
Q ss_pred hhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccc
Q 043685 472 LGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGE 515 (620)
Q Consensus 472 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 515 (620)
+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++.+.
T Consensus 171 l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 77788888888888888654 3577888888888888887754
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.7e-17 Score=152.28 Aligned_cols=149 Identities=17% Similarity=0.232 Sum_probs=70.7
Q ss_pred CCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCc
Q 043685 405 QLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLS 484 (620)
Q Consensus 405 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~ 484 (620)
+|++|++++|.+. .++ .+..+++|++|++++|.+. .+ ..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 3444444444433 222 2344444444444444332 11 234444555555555555544344444555555555555
Q ss_pred CCcCcccchhHhhhccCCCEEeCCCCc-CccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCc
Q 043685 485 NNQFVQELPKELEKLVQLSLLDASHNL-FGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQ 561 (620)
Q Consensus 485 ~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 561 (620)
+|.+.+..+..+..+++|+.|++++|+ ++. .+ .+..+++|+.|++++|++++. + .+..+++|++|++++|++.
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 555544444455555555555555554 432 22 355555555666665555532 2 4555566666666666554
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=8.2e-18 Score=153.60 Aligned_cols=132 Identities=22% Similarity=0.331 Sum_probs=86.8
Q ss_pred cEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhh-hhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCC
Q 043685 431 TKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPE-ILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASH 509 (620)
Q Consensus 431 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 509 (620)
+.++++++.++ .+|..+. .++++|++++|.+++..+. .+..+++|++|++++|.+.+..|..|..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45666666664 4444332 2666666666666554443 366666777777777777666666677777777777777
Q ss_pred CcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCC
Q 043685 510 NLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVP 565 (620)
Q Consensus 510 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 565 (620)
|++++..+..|..+++|+.|++++|++++..|..|..+++|++|++++|++.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 77776666666777777777777777776667677777777777777777766554
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=5.5e-17 Score=148.90 Aligned_cols=154 Identities=18% Similarity=0.245 Sum_probs=111.4
Q ss_pred CCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEE
Q 043685 378 KCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYL 457 (620)
Q Consensus 378 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 457 (620)
.+++|++|++++|.+. .++ .+..+++|++|++++|.+. .+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3455666666666665 333 4566667777777777554 22356677788888888888876667778888888888
Q ss_pred EccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCc
Q 043685 458 DFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLS 537 (620)
Q Consensus 458 ~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 537 (620)
++++|.+++..+..+..+++|++|++++|...+.++ .+..+++|+.|++++|++++.. .+..+++|+.|++++|++.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence 888888887777888888888999998887324454 5888889999999999888543 6778889999999999876
Q ss_pred c
Q 043685 538 G 538 (620)
Q Consensus 538 ~ 538 (620)
+
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 3
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=4.3e-17 Score=156.71 Aligned_cols=168 Identities=23% Similarity=0.272 Sum_probs=82.6
Q ss_pred CCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEcc
Q 043685 357 NLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILR 436 (620)
Q Consensus 357 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 436 (620)
++..++++++.+.+.. .+..+++|+.|++++|.+.. ++ .+..+++|++|++++|++++..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3444455555554332 34445555555555555542 22 34445555555555555543222 4455555555555
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCcccc
Q 043685 437 GNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEI 516 (620)
Q Consensus 437 ~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 516 (620)
+|++++ ++. + .. ++|++|++++|.+.+. ..+..+++|+.|++++|++++.
T Consensus 94 ~N~l~~-l~~-~------------------------~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~- 143 (263)
T 1xeu_A 94 RNRLKN-LNG-I------------------------PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI- 143 (263)
T ss_dssp SSCCSC-CTT-C------------------------CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-
T ss_pred CCccCC-cCc-c------------------------cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-
Confidence 555542 221 1 11 4455555555555332 1345555555555555555533
Q ss_pred chhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccC
Q 043685 517 PFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGP 563 (620)
Q Consensus 517 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 563 (620)
+ .+..+++|+.|++++|++++. ..+..+++|+.|++++|+++..
T Consensus 144 ~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 144 V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 1 345555555555555555544 3455555566666666655533
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=1.1e-16 Score=159.82 Aligned_cols=263 Identities=11% Similarity=0.010 Sum_probs=158.6
Q ss_pred CCcCeEEecCCccc--ccCCCCccCCCCccEEEecCccccccccccccc--------cCCCceeecCCCccccccCcccC
Q 043685 284 STLTWLTFSLNHFT--GYLPHDICRGGALEIFIVDEYRFQGTIPTSLRN--------CTSLIRVRLDGNNLTGNISEALG 353 (620)
Q Consensus 284 ~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~--------l~~L~~L~l~~~~l~~~~~~~~~ 353 (620)
++|+.|++++|.+. ......+ +.+..+....+.+. +..|.+ +++|+++.+.+ .++.+...+|.
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~ 121 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK 121 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred ccCeEEecCcceeEEecCccccc---cccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence 56778888877776 2221111 11333333333221 233444 77777777777 66666677777
Q ss_pred CCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCcc----ccCCCccccCCCCCC-EEecCCCeecc-cCChhhhcc
Q 043685 354 IYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNI----TGGIPREIGNSSQLQ-ALDLSLNQIVG-DIPKELGKS 427 (620)
Q Consensus 354 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l----~~~~~~~~~~l~~L~-~L~l~~n~~~~-~~~~~~~~l 427 (620)
.+++|+++++.+|.+..+.+..|.++.++..+....... .......|..+..|+ .+.+....... .....-...
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~ 201 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQP 201 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCG
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCc
Confidence 777777777777777666666777766666666555321 112233455555555 34443221110 000001123
Q ss_pred CCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCC-EEe
Q 043685 428 NSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLS-LLD 506 (620)
Q Consensus 428 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~ 506 (620)
.+++.+.+.++-...........+++|+++++++|+++.....+|.++++|+.+++.+| +..+.+.+|.++++|+ .++
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~ 280 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLE 280 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEE
Confidence 45555655554221111111123677888888887777777777888888888888776 6556666778888888 888
Q ss_pred CCCCcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEc
Q 043685 507 ASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDI 555 (620)
Q Consensus 507 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 555 (620)
+.+ .++.+.+.+|.++++|+.+++++|.++.+.+.+|.++++|+.++.
T Consensus 281 l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 281 LPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred Ecc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 877 677677778888888888888888887777778888888887763
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=9.3e-17 Score=154.37 Aligned_cols=170 Identities=19% Similarity=0.266 Sum_probs=127.3
Q ss_pred ccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEE
Q 043685 330 NCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQAL 409 (620)
Q Consensus 330 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 409 (620)
++.++..+++.++.+++.. .+..+++|+.|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 4677888999999988654 577899999999999999854 3 68889999999999999986544 8899999999
Q ss_pred ecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCc
Q 043685 410 DLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFV 489 (620)
Q Consensus 410 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 489 (620)
++++|++++. +. +.. ++|++|++++|++++ ++ .+..+++|++|++++|.+++. + .+..+++|++|++++|.+.
T Consensus 91 ~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCCc-Cc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 9999999853 33 233 889999999998874 33 467777777777777777654 2 4556666666666666665
Q ss_pred ccchhHhhhccCCCEEeCCCCcCcc
Q 043685 490 QELPKELEKLVQLSLLDASHNLFGG 514 (620)
Q Consensus 490 ~~~~~~l~~l~~L~~L~l~~n~l~~ 514 (620)
+. ..+..+++|+.|++++|++..
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred ch--HHhccCCCCCEEeCCCCcccC
Confidence 44 345555666666666665553
No 119
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=4.1e-15 Score=151.40 Aligned_cols=241 Identities=12% Similarity=0.092 Sum_probs=142.6
Q ss_pred CccEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECC
Q 043685 309 ALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVS 388 (620)
Q Consensus 309 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 388 (620)
+|+.+.+..+ +...-..+|.++ +|+.+.+.. .+..+...+|..+++|+.+++.+|.+..+....|. ..+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 3444444433 222333444443 466666654 45555556666666677777766666655555554 4666777666
Q ss_pred CCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCC---
Q 043685 389 MNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFN--- 465 (620)
Q Consensus 389 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~--- 465 (620)
.+ +..+...+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+.+ .++..-..+|..+++|+.+++.++.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 43 44445556666777777776653 34344455555 5677777633 344344556667777777777666543
Q ss_pred --cchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCcc
Q 043685 466 --NSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNC 543 (620)
Q Consensus 466 --~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 543 (620)
.....+|.++++|+.+++.+ .+......+|.++++|+.+++..+ ++.+...+|.++ +|+.+++.+|.+..+.+..
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~ 364 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKV 364 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSS
T ss_pred ccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccc
Confidence 34456666677777777763 355555566677777777777444 555556667666 7777777777666555666
Q ss_pred ccCCC-CCCEEEccCCcC
Q 043685 544 FDGMH-GLSVIDISDNQL 560 (620)
Q Consensus 544 ~~~l~-~L~~L~l~~N~l 560 (620)
|.+++ .++.|++..+.+
T Consensus 365 F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 365 WYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CCCSCTTCCEEEECGGGH
T ss_pred ccCCCCCccEEEeCHHHH
Confidence 66663 566666665554
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=3.4e-16 Score=156.18 Aligned_cols=222 Identities=13% Similarity=0.034 Sum_probs=168.2
Q ss_pred CCCccEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCc----ccCccCccccCCCCC
Q 043685 307 GGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNN----FYGEISSNWGKCPKL 382 (620)
Q Consensus 307 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~~~~L 382 (620)
+++|+.+.+.+ .+...-+.+|.+|++|+++.+.+|.+..+...+|..+.++..+...... ........|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 89999999998 7776677789999999999999999988888899888888877776532 222334556677777
Q ss_pred c-EEECCCCcc-ccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEcc
Q 043685 383 G-TLNVSMNNI-TGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFS 460 (620)
Q Consensus 383 ~-~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls 460 (620)
+ .+.+..... ............++..+.+.++-...........+++|+.+++++|+++...+.+|..+++|++|++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 7 555544321 11111111235567777776542221111112348899999999999986666789999999999999
Q ss_pred CCcCCcchhhhhhCCCCCC-EecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEEC
Q 043685 461 ANRFNNSVPEILGNLLKLH-YLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNL 531 (620)
Q Consensus 461 ~n~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 531 (620)
+| ++.....+|.++++|+ .+++.+ .+..+.+.+|.++++|+.|++++|+++.+.+.+|.++++|+.++.
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 98 7778888999999999 999988 777777789999999999999999999888899999999999874
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=2.8e-18 Score=182.78 Aligned_cols=200 Identities=19% Similarity=0.167 Sum_probs=131.8
Q ss_pred CCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEE
Q 043685 354 IYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKL 433 (620)
Q Consensus 354 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 433 (620)
..+.|+.|++++|.+. .+|..++.+++|+.|++++|......+..+ ..+...+..|..+..+++|+.|
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHHH
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhcccC
Confidence 3455555555555554 345555555555555554442100000000 0001233444555556666666
Q ss_pred E-ccCC-------------cccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhc
Q 043685 434 I-LRGN-------------QLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKL 499 (620)
Q Consensus 434 ~-l~~n-------------~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 499 (620)
+ ++.| .+.. ++ ...|+.|++++|.+++ +|. +..+++|+.|++++|.+. .+|..+..+
T Consensus 415 ~~l~~n~~~~L~~l~l~~n~i~~-l~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 485 (567)
T 1dce_A 415 DPMRAAYLDDLRSKFLLENSVLK-ME-----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL 485 (567)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHH-HH-----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred cchhhcccchhhhhhhhcccccc-cC-----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcC
Confidence 5 3433 3331 11 1258889999998876 455 888889999999999886 677888899
Q ss_pred cCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCcccc-CccccCCCCCCEEEccCCcCccCCCCCcc----cCCCC
Q 043685 500 VQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSI-PNCFDGMHGLSVIDISDNQLQGPVPNSTA----FRNAP 574 (620)
Q Consensus 500 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~----~~~l~ 574 (620)
++|+.|+|++|++++ +| .++.+++|+.|++++|++++.. |..+..+++|+.|++++|++++.+|.... +++++
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~ 563 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence 999999999999986 45 7888999999999999998776 88888999999999999999887765432 55565
Q ss_pred cc
Q 043685 575 VE 576 (620)
Q Consensus 575 ~~ 576 (620)
.+
T Consensus 564 ~L 565 (567)
T 1dce_A 564 SI 565 (567)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=5.7e-16 Score=138.23 Aligned_cols=134 Identities=23% Similarity=0.260 Sum_probs=81.8
Q ss_pred CCCcEEEccCCccc-ccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEe
Q 043685 428 NSLTKLILRGNQLT-GRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLD 506 (620)
Q Consensus 428 ~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 506 (620)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555554 34444455555566666666655543 4455566666666666666555555566666777777
Q ss_pred CCCCcCccccc-hhccCCCCCCEEECCCCcCccccC---ccccCCCCCCEEEccCCcCccC
Q 043685 507 ASHNLFGGEIP-FQICSLKSLEMLNLSHNNLSGSIP---NCFDGMHGLSVIDISDNQLQGP 563 (620)
Q Consensus 507 l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~N~l~~~ 563 (620)
+++|++++... ..+..+++|+.|++++|++++..+ ..+..+++|++|++++|.+...
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 77776664322 566667777777777777765444 3566777777777777776643
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=3.5e-16 Score=142.73 Aligned_cols=176 Identities=21% Similarity=0.262 Sum_probs=106.4
Q ss_pred CEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCc-cccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcC
Q 043685 407 QALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPT-EIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSN 485 (620)
Q Consensus 407 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~ 485 (620)
++++++++.++ .+|..+. .++++|++++|++.+..+. .+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45555555554 3333222 2566666666666544332 356666777777777777666666677777777777777
Q ss_pred CcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCc-cccCCCCCCEEEccCCcCccCC
Q 043685 486 NQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPN-CFDGMHGLSVIDISDNQLQGPV 564 (620)
Q Consensus 486 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~ 564 (620)
|.+.+..+..|.++++|+.|++++|++++..|..|..+++|+.|++++|++....+. .+.. .++...+..+......
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~~ 165 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCGA 165 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCCC
Confidence 777666666677777777777777777777777777778888888888877654331 1110 1111223334444333
Q ss_pred CCCcccCCCCccccCCCCCCCCCCC
Q 043685 565 PNSTAFRNAPVEALEGNKGLCGGVK 589 (620)
Q Consensus 565 ~~~~~~~~l~~~~l~~Np~~C~~~~ 589 (620)
|. .+......++..+.+.|....
T Consensus 166 P~--~l~~~~l~~l~~~~~~C~~~~ 188 (192)
T 1w8a_A 166 PS--KVRDVQIKDLPHSEFKCSSEN 188 (192)
T ss_dssp ST--TTTTSBGGGSCTTTCCCCCC-
T ss_pred Ch--HHcCCChhhCcHhhcCcCCCC
Confidence 42 244455567777888887643
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=7.9e-16 Score=140.30 Aligned_cols=131 Identities=28% Similarity=0.307 Sum_probs=107.9
Q ss_pred cEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCC
Q 043685 431 TKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHN 510 (620)
Q Consensus 431 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 510 (620)
+.++++++.++ .+|..+. ++|++|++++|.++ .+|..|..+++|++|++++|.+.+..+..|.++++|+.|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57888888887 6665543 58889999999887 45577888888999999999888777778888889999999999
Q ss_pred cCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCC
Q 043685 511 LFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVP 565 (620)
Q Consensus 511 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 565 (620)
++++..+..|..+++|+.|++++|+++.+.+..|..+++|+.|++++|++.+..+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 8888888888888889999999988887777778888888888888888876544
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=3.4e-16 Score=142.74 Aligned_cols=129 Identities=24% Similarity=0.301 Sum_probs=80.4
Q ss_pred CEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCC
Q 043685 455 EYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHN 534 (620)
Q Consensus 455 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 534 (620)
+.++++++.++.. |..+ .++|++|++++|.+. .+|..|..+++|+.|++++|++++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVL-PKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSC-CSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcC-CCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 4566666666533 3222 245666666666664 44556666666666777666666666666666666666777666
Q ss_pred cCccccCccccCCCCCCEEEccCCcCccCCCCC-cccCCCCccccCCCCCCCCC
Q 043685 535 NLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKGLCGG 587 (620)
Q Consensus 535 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~l~~Np~~C~~ 587 (620)
+++++.|..|..+++|++|+|++|+++...+.. ..+++++.+++.+|||.|+|
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 666666666666666666777666666544432 23556666666666666665
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=4e-18 Score=181.62 Aligned_cols=204 Identities=20% Similarity=0.152 Sum_probs=149.7
Q ss_pred cccCCCceeecCCCccccccCcccCCCCCCCEEECCCCc-------------ccCccCccccCCCCCcEEE-CCCCcccc
Q 043685 329 RNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNN-------------FYGEISSNWGKCPKLGTLN-VSMNNITG 394 (620)
Q Consensus 329 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~~~~~~~L~~L~-l~~n~l~~ 394 (620)
..++.|+.|++++|.+.. .+..++.+++|+.|++++|. ..+..+..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~-Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV-LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHHh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 557899999999999974 56778899999999997764 2233333444444455544 3333221
Q ss_pred CCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhC
Q 043685 395 GIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGN 474 (620)
Q Consensus 395 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~ 474 (620)
.|+.+.+.+|.+.... ...|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..
T Consensus 424 ----------~L~~l~l~~n~i~~l~------~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLKME------YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHH------HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ----------hhhhhhhhcccccccC------ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 1222333334433211 1358889999998884 665 888899999999999988 66778889
Q ss_pred CCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCcccc-chhccCCCCCCEEECCCCcCccccCcc---ccCCCCC
Q 043685 475 LLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEI-PFQICSLKSLEMLNLSHNNLSGSIPNC---FDGMHGL 550 (620)
Q Consensus 475 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L 550 (620)
+++|+.|++++|.+++ +| .+..+++|+.|++++|++++.. |..+..+++|+.|++++|++++..|.. +..+++|
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L 562 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence 9999999999999975 56 7889999999999999999776 888999999999999999998765532 3447889
Q ss_pred CEEEc
Q 043685 551 SVIDI 555 (620)
Q Consensus 551 ~~L~l 555 (620)
+.|++
T Consensus 563 ~~L~l 567 (567)
T 1dce_A 563 SSILT 567 (567)
T ss_dssp SEEEC
T ss_pred CccCC
Confidence 88874
No 127
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.63 E-value=2.3e-14 Score=146.64 Aligned_cols=65 Identities=9% Similarity=-0.010 Sum_probs=43.6
Q ss_pred CcCcccccCCCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCCCCCcCCCCcccCCCCCCcEEEcc
Q 043685 117 ESFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLY 183 (620)
Q Consensus 117 ~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 183 (620)
.....+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+++..+ +..+...+|..+..|+.+.+.
T Consensus 61 sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp EECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred EhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 344567778888888888644 55455667778888888887654 554556667777777665544
No 128
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.63 E-value=2.3e-14 Score=145.90 Aligned_cols=244 Identities=12% Similarity=0.070 Sum_probs=194.9
Q ss_pred CCccEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEEC
Q 043685 308 GALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNV 387 (620)
Q Consensus 308 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 387 (620)
..++.+.+.+. ++..-..+|.++ +|+.+.+..+ ++.+...+|..+ +|+.+.+.. .+..+...+|.++++|+.+++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 45566666542 333445567775 7999998766 777777888884 799999986 677677788999999999999
Q ss_pred CCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcc
Q 043685 388 SMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNS 467 (620)
Q Consensus 388 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ 467 (620)
.+|.++......|. ..+|+.+.+..+ +......+|.++++|+.+.+.++ ++..-..+|.. .+|+.+++ .+.++..
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEE
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEE
Confidence 99998866666676 689999999855 66677788999999999999875 44345566766 78999999 4556667
Q ss_pred hhhhhhCCCCCCEecCcCCcCc-----ccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCCCcCccccCc
Q 043685 468 VPEILGNLLKLHYLGLSNNQFV-----QELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPN 542 (620)
Q Consensus 468 ~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 542 (620)
...+|.++++|+.+++.++.+. ...+.+|.++++|+.+++. +.++.+...+|.++++|+.+++..+ ++.+.+.
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 7889999999999999887764 3556789999999999999 4588788899999999999999655 7777888
Q ss_pred cccCCCCCCEEEccCCcCccCC
Q 043685 543 CFDGMHGLSVIDISDNQLQGPV 564 (620)
Q Consensus 543 ~~~~l~~L~~L~l~~N~l~~~~ 564 (620)
+|.++ +|+.+++++|.+....
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCC
T ss_pred hCCCC-CCCEEEEcCCCCcccc
Confidence 99999 9999999999876543
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=1.1e-15 Score=133.31 Aligned_cols=129 Identities=24% Similarity=0.248 Sum_probs=89.6
Q ss_pred cCCCcEEEccCCccc-ccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEE
Q 043685 427 SNSLTKLILRGNQLT-GRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLL 505 (620)
Q Consensus 427 l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 505 (620)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|+.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356677777777666 45666666677777777777777654 556667777777777777766566666677777777
Q ss_pred eCCCCcCccc-cchhccCCCCCCEEECCCCcCccccC---ccccCCCCCCEEEccC
Q 043685 506 DASHNLFGGE-IPFQICSLKSLEMLNLSHNNLSGSIP---NCFDGMHGLSVIDISD 557 (620)
Q Consensus 506 ~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~ 557 (620)
++++|++++. .+..+..+++|+.|++++|++++..+ ..+..+++|++||+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 7777777753 23667777777777777777776554 4667777777777753
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=3.1e-15 Score=133.42 Aligned_cols=134 Identities=22% Similarity=0.139 Sum_probs=104.1
Q ss_pred CCCCCEEecCCCeec-ccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEe
Q 043685 403 SSQLQALDLSLNQIV-GDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYL 481 (620)
Q Consensus 403 l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L 481 (620)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.++..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 466777777777776 45666677778888888888887744 667778888888888888877677777778888888
Q ss_pred cCcCCcCcccc-hhHhhhccCCCEEeCCCCcCccccc---hhccCCCCCCEEECCCCcCcc
Q 043685 482 GLSNNQFVQEL-PKELEKLVQLSLLDASHNLFGGEIP---FQICSLKSLEMLNLSHNNLSG 538 (620)
Q Consensus 482 ~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~ 538 (620)
++++|.+.+.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 88888886542 2677888888888888888886655 478888889999998888763
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=4.5e-15 Score=133.59 Aligned_cols=134 Identities=24% Similarity=0.262 Sum_probs=108.8
Q ss_pred CcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCC
Q 043685 430 LTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASH 509 (620)
Q Consensus 430 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 509 (620)
.+.+++++++++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 466777777776 445433 36788888888888877777778888889999988888766666678889999999999
Q ss_pred CcCccccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCCCC
Q 043685 510 NLFGGEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPN 566 (620)
Q Consensus 510 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 566 (620)
|++++..+..+..+++|+.|++++|++++..+..|..+++|++|++++|++.+..|.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 999877777788899999999999999877777778889999999999999877663
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.61 E-value=3.7e-16 Score=171.78 Aligned_cols=179 Identities=24% Similarity=0.287 Sum_probs=74.9
Q ss_pred CccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCC
Q 043685 373 SSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLI 452 (620)
Q Consensus 373 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 452 (620)
+..+..++.|+.|+|++|.+. .++..+..+++|++|++++|.++ .+|..+..+++|++|+|++|+++ .+|..+..++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 444555555555555555555 33333345555555666555555 45555555555666666666555 4455555555
Q ss_pred CCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccC-CCEEeCCCCcCccccchhccCCCCCCEEEC
Q 043685 453 KLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQ-LSLLDASHNLFGGEIPFQICSLKSLEMLNL 531 (620)
Q Consensus 453 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 531 (620)
+|++|+|++|.++ .+|..|..+++|+.|+|++|.+.+.+|..+..+.. +..+++++|.+++.+|. .|+.|++
T Consensus 294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l 366 (727)
T 4b8c_D 294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEI 366 (727)
T ss_dssp TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C------
T ss_pred CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEe
Confidence 5666666655554 33444555556666666666555555544433211 12245555555544443 2334444
Q ss_pred CCC--------cCccccCccccCCCCCCEEEccCCcCc
Q 043685 532 SHN--------NLSGSIPNCFDGMHGLSVIDISDNQLQ 561 (620)
Q Consensus 532 ~~n--------~l~~~~~~~~~~l~~L~~L~l~~N~l~ 561 (620)
++| .+.+..+..+..+..+....+++|-+.
T Consensus 367 ~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 367 NTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -----------------------------------CCC
T ss_pred ecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 444 222223333344445555556666554
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.60 E-value=1.5e-13 Score=140.66 Aligned_cols=145 Identities=12% Similarity=0.115 Sum_probs=75.3
Q ss_pred ccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCC
Q 043685 328 LRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQ 407 (620)
Q Consensus 328 l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 407 (620)
+.++..++.+.+..+.. .....+|..+..++.+......+ ....|.++.+|+.+.+..+ ++.+...+|.++++|+
T Consensus 249 f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~ 323 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLV 323 (394)
T ss_dssp TTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred ccccccceeEEcCCCcc-eeeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCC
Confidence 44445555555544322 23344455555555555544322 2234555666666666543 3333444566666666
Q ss_pred EEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEe
Q 043685 408 ALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYL 481 (620)
Q Consensus 408 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L 481 (620)
.+++.++ ++.....+|.++.+|+.+.+..+ ++..-..+|.++++|+.+++..+ +. .....|.++++|+.+
T Consensus 324 ~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 324 SIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp EECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred EEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 6666533 44344556666666666666555 44344456666666766666543 21 223455556555543
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=4.4e-15 Score=129.51 Aligned_cols=127 Identities=23% Similarity=0.158 Sum_probs=82.5
Q ss_pred CCCCEEecCCCeec-ccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEec
Q 043685 404 SQLQALDLSLNQIV-GDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLG 482 (620)
Q Consensus 404 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ 482 (620)
++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45566666666655 44555555666666666666666533 4566667777777777777665666666677777777
Q ss_pred CcCCcCccc-chhHhhhccCCCEEeCCCCcCccccc---hhccCCCCCCEEECC
Q 043685 483 LSNNQFVQE-LPKELEKLVQLSLLDASHNLFGGEIP---FQICSLKSLEMLNLS 532 (620)
Q Consensus 483 l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~ 532 (620)
+++|.+.+. .+..+..+++|+.|++++|++++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777777543 23566777777777777777775554 456677777777765
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.58 E-value=1.5e-15 Score=166.89 Aligned_cols=181 Identities=27% Similarity=0.301 Sum_probs=121.6
Q ss_pred ccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhc
Q 043685 347 NISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGK 426 (620)
Q Consensus 347 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 426 (620)
..+..+..++.|+.|+|++|.+. .++..+..+++|++|+|++|.++ .+|..+..+++|++|++++|.++ .+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 44667888999999999999988 45555668999999999999999 77888999999999999999998 77888999
Q ss_pred cCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCC-CCEecCcCCcCcccchhHhhhccCCCEE
Q 043685 427 SNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLK-LHYLGLSNNQFVQELPKELEKLVQLSLL 505 (620)
Q Consensus 427 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L 505 (620)
+++|++|+|++|.++ .+|..|..+++|++|+|++|.+++.+|..+..... ...+++++|.+.+.+|. .|+.|
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l 364 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFI 364 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C----
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------cccee
Confidence 999999999999998 77888999999999999999999888887765422 23478999999877764 45566
Q ss_pred eCCCC--------cCccccchhccCCCCCCEEECCCCcCc
Q 043685 506 DASHN--------LFGGEIPFQICSLKSLEMLNLSHNNLS 537 (620)
Q Consensus 506 ~l~~n--------~l~~~~~~~~~~l~~L~~L~l~~n~l~ 537 (620)
++++| .+.+..+..+..+..+....+++|-+.
T Consensus 365 ~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 365 EINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -------------------------------------CCC
T ss_pred EeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 67766 344444444556666677778888764
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=1.8e-14 Score=129.67 Aligned_cols=132 Identities=19% Similarity=0.135 Sum_probs=115.1
Q ss_pred CCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCC
Q 043685 454 LEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSH 533 (620)
Q Consensus 454 L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 533 (620)
.+.++++++.++... ..+ .++|++|++++|.+.+..+..+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p-~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP-TGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCC-TTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCC-CCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 578999999987543 322 36899999999999877777789999999999999999988778889999999999999
Q ss_pred CcCccccCccccCCCCCCEEEccCCcCccCCCCC-cccCCCCccccCCCCCCCCCC
Q 043685 534 NNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKGLCGGV 588 (620)
Q Consensus 534 n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~l~~Np~~C~~~ 588 (620)
|++++..+..|..+++|++|++++|++++..+.. ..+++++.+++.+||+.|+++
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999888888899999999999999999776654 347899999999999999874
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=2.3e-14 Score=128.67 Aligned_cols=132 Identities=21% Similarity=0.212 Sum_probs=78.8
Q ss_pred hccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCE
Q 043685 425 GKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSL 504 (620)
Q Consensus 425 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 504 (620)
..+.+|++|++++|.++ .++......++|++|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|+.
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 34455566666666555 2333222223666666666666543 34556666666666666665544444566677777
Q ss_pred EeCCCCcCccccch--hccCCCCCCEEECCCCcCccccCc----cccCCCCCCEEEccCCcCc
Q 043685 505 LDASHNLFGGEIPF--QICSLKSLEMLNLSHNNLSGSIPN----CFDGMHGLSVIDISDNQLQ 561 (620)
Q Consensus 505 L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~ 561 (620)
|++++|+++. .|. .+..+++|+.|++++|++.. .|. .+..+++|+.||+++|.+.
T Consensus 93 L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 7777777653 333 56667777777777777763 343 3666777777777777664
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=1.1e-15 Score=140.30 Aligned_cols=132 Identities=23% Similarity=0.258 Sum_probs=83.1
Q ss_pred hhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCC
Q 043685 423 ELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQL 502 (620)
Q Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 502 (620)
.+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 55566666666666666653 44 5556666666666666665 344455555667777777776654 33 46667777
Q ss_pred CEEeCCCCcCccccc-hhccCCCCCCEEECCCCcCccccCc----------cccCCCCCCEEEccCCcCc
Q 043685 503 SLLDASHNLFGGEIP-FQICSLKSLEMLNLSHNNLSGSIPN----------CFDGMHGLSVIDISDNQLQ 561 (620)
Q Consensus 503 ~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~----------~~~~l~~L~~L~l~~N~l~ 561 (620)
+.|++++|++++..+ ..+..+++|+.|++++|++.+..|. .+..+++|+.|| +|+++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 777777777764332 4566777777777777777655443 266677777776 56655
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=2.5e-13 Score=121.94 Aligned_cols=132 Identities=19% Similarity=0.107 Sum_probs=64.9
Q ss_pred CCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccCCCcE
Q 043685 353 GIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTK 432 (620)
Q Consensus 353 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 432 (620)
..+++|++|++++|.+... +......++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 3445555555555555532 22222223555555555555533 34555556666666666555443333455555555
Q ss_pred EEccCCcccccCCc--cccCCCCCCEEEccCCcCCcchhh---hhhCCCCCCEecCcCCcC
Q 043685 433 LILRGNQLTGRLPT--EIGSLIKLEYLDFSANRFNNSVPE---ILGNLLKLHYLGLSNNQF 488 (620)
Q Consensus 433 L~l~~n~l~~~~~~--~~~~~~~L~~L~ls~n~l~~~~~~---~l~~l~~L~~L~l~~n~l 488 (620)
|++++|++. .++. .+..+++|++|++++|++...... .+..+++|+.|++++|..
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 555555554 3332 444555555555555555432211 244455555555555443
No 140
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.44 E-value=4.7e-11 Score=121.95 Aligned_cols=135 Identities=10% Similarity=0.075 Sum_probs=79.8
Q ss_pred CCCCCCCCC-CCCEEECCCCCCCCcCCccccCCCCCCEEECCCCCCcccCCCCCCCCcEEEccCCcCCCcCcccccCCCC
Q 043685 50 RDLSFSSFP-QLEYLDLSLNGLFGTIPSQIGNLSKLSYISLDSNQLFGKIPLELSSIEELFLYSNHLNESFPPFLGNLSN 128 (620)
Q Consensus 50 ~~~~~~~~~-~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~l~~L~~L~ls~~~~~~~~~~~l~~l~~ 128 (620)
...+|.+++ .|+.+.+... ++..-..+|.++.+|+.+.+..+... .++.....+|..|.+
T Consensus 55 g~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~------------------~l~~Ig~~aF~~c~~ 115 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPS------------------CVKKIGRQAFMFCSE 115 (394)
T ss_dssp CTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCC------------------CCCEECTTTTTTCTT
T ss_pred CHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCC------------------eeeEechhhchhccc
Confidence 355666664 4777777643 44455667777777777776654311 112234456777777
Q ss_pred CCEEEccCCcCCcccCccCCCCCCCCEEeCCCCCCcCCCCcccCCCCCCcEEEcccccccccCCCCCCceeecEEEcc
Q 043685 129 IVRLYINNNSLSSSIPTNIGNLKFLFELDLSNNQLGGSIPLSFGNLSNLARLCLYKNLLIGSIPSSLGNLKLIDLKLS 206 (620)
Q Consensus 129 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~L~~L~l~ 206 (620)
|+.+.+..+ ++......|..+.+|+.+.+..+ +......+|..+..|+.+.+..+ +.......|....|+.+.+.
T Consensus 116 L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip 190 (394)
T 4gt6_A 116 LTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIP 190 (394)
T ss_dssp CCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEEC
T ss_pred ceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEEC
Confidence 777776654 34355566777788888877653 33355566777777777777554 22233334443335555443
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=3.9e-13 Score=119.67 Aligned_cols=111 Identities=23% Similarity=0.249 Sum_probs=95.9
Q ss_pred CCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECC
Q 043685 453 KLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLS 532 (620)
Q Consensus 453 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 532 (620)
..+++++++|.++. +|..+ .++|++|++++|.+.+..|..|..+++|+.|++++|++++..+..|..+++|+.|+++
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 35789999999975 44433 3789999999999988888889999999999999999998888888999999999999
Q ss_pred CCcCccccCccccCCCCCCEEEccCCcCccCCCC
Q 043685 533 HNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPN 566 (620)
Q Consensus 533 ~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 566 (620)
+|+++++.+..|..+++|++|+|++|++.+..+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~ 120 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD 120 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence 9999988778899999999999999999877653
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=3e-15 Score=137.38 Aligned_cols=132 Identities=23% Similarity=0.181 Sum_probs=66.7
Q ss_pred cccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCC
Q 043685 399 EIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKL 478 (620)
Q Consensus 399 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L 478 (620)
.+..+++|++|++++|.+.+ +| .+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++ ++ .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 34445555555555555543 33 4455555555555555554 344444444555555555555543 22 34555555
Q ss_pred CEecCcCCcCcccch-hHhhhccCCCEEeCCCCcCccccch----------hccCCCCCCEEECCCCcCc
Q 043685 479 HYLGLSNNQFVQELP-KELEKLVQLSLLDASHNLFGGEIPF----------QICSLKSLEMLNLSHNNLS 537 (620)
Q Consensus 479 ~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~----------~~~~l~~L~~L~l~~n~l~ 537 (620)
++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|. .+..+++|+.|| +|.++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 555555555543221 2455555666666666655443332 245566666665 44443
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=6.5e-13 Score=118.21 Aligned_cols=107 Identities=26% Similarity=0.261 Sum_probs=83.7
Q ss_pred CcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCC
Q 043685 430 LTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASH 509 (620)
Q Consensus 430 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 509 (620)
.+.+++++|+++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 567888888887 5665543 6788888888888877777788888888888888888766666678888888888888
Q ss_pred CcCccccchhccCCCCCCEEECCCCcCccc
Q 043685 510 NLFGGEIPFQICSLKSLEMLNLSHNNLSGS 539 (620)
Q Consensus 510 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 539 (620)
|++++..+..|..+++|+.|++++|++...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 888877777788888888888888887643
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=7.6e-13 Score=118.16 Aligned_cols=109 Identities=23% Similarity=0.244 Sum_probs=93.6
Q ss_pred CCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECCC
Q 043685 454 LEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLSH 533 (620)
Q Consensus 454 L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 533 (620)
-+.+++++|.++. +|..+. ++|++|++++|.+.+..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++
T Consensus 14 ~~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 3689999999864 444443 7899999999999888888899999999999999999987777788999999999999
Q ss_pred CcCccccCccccCCCCCCEEEccCCcCccCCC
Q 043685 534 NNLSGSIPNCFDGMHGLSVIDISDNQLQGPVP 565 (620)
Q Consensus 534 n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 565 (620)
|+++++.+..|..+++|++|++++|++....+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99997777779999999999999999986654
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.38 E-value=1.1e-10 Score=119.23 Aligned_cols=244 Identities=13% Similarity=0.112 Sum_probs=98.2
Q ss_pred CccCCCCccEEEecCccccccccccccccCCCceeecCCCccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCC
Q 043685 303 DICRGGALEIFIVDEYRFQGTIPTSLRNCTSLIRVRLDGNNLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKL 382 (620)
Q Consensus 303 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 382 (620)
.+..+.+|+.+.+.... .......|..+..|+.+.+..+ +..+...+|.. ..|+.+.+..+ +.......|.++..+
T Consensus 132 aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~af~~c~~l 207 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK-VTRIGTNAFSECFAL 207 (394)
T ss_dssp TTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT-CCEECTTTTTTCTTC
T ss_pred hhhhhccccccccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc-ccccccchhhhcccc
Confidence 44445555555554321 1122334555555555555433 33333344432 34555555432 122333445555555
Q ss_pred cEEECCCCccccCCCcc-------------ccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCcccc
Q 043685 383 GTLNVSMNNITGGIPRE-------------IGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIG 449 (620)
Q Consensus 383 ~~L~l~~n~l~~~~~~~-------------~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 449 (620)
+................ +.....+..+.+.. .+......+|..+..|+.+.+.++... .-..+|.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~ 285 (394)
T 4gt6_A 208 STITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFM 285 (394)
T ss_dssp CEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTT
T ss_pred ceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccc
Confidence 55554433322110000 11112222333321 122223334445555555555443322 2333444
Q ss_pred CCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEE
Q 043685 450 SLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEML 529 (620)
Q Consensus 450 ~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 529 (620)
++++|+.+.+. +.++.....+|.++.+|+.+++..+ +..+...+|.++.+|+.+.+..+ ++.+...+|.++++|+.+
T Consensus 286 ~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 286 NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI 362 (394)
T ss_dssp TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred cccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence 55555555553 2233333444455555555555432 33333344555555555555332 333444445555555555
Q ss_pred ECCCCcCccccCccccCCCCCCEEEccCC
Q 043685 530 NLSHNNLSGSIPNCFDGMHGLSVIDISDN 558 (620)
Q Consensus 530 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 558 (620)
++.++... ...+..+..|+.+.+..|
T Consensus 363 ~~~~~~~~---~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 363 EYSGSRSQ---WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp EESSCHHH---HHTCBCCCCC--------
T ss_pred EECCceee---hhhhhccCCCCEEEeCCC
Confidence 55444321 123334444444444433
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=1.8e-12 Score=115.73 Aligned_cols=106 Identities=23% Similarity=0.243 Sum_probs=85.9
Q ss_pred CcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCCC
Q 043685 430 LTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDASH 509 (620)
Q Consensus 430 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 509 (620)
-+.+++++++++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|+.|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367888888886 6666553 7888888888888887788888888888888888888776666678888888888888
Q ss_pred CcCccccchhccCCCCCCEEECCCCcCcc
Q 043685 510 NLFGGEIPFQICSLKSLEMLNLSHNNLSG 538 (620)
Q Consensus 510 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 538 (620)
|++++..+..|..+++|+.|++++|++..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 88887666678888888888888888874
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=4.4e-13 Score=135.06 Aligned_cols=183 Identities=21% Similarity=0.164 Sum_probs=110.9
Q ss_pred CCCCcEEECCCCccccCCCccc----c-CCCCCCEEecCCCeecccCChhh-hccCCCcEEEccCCcccccCCccc----
Q 043685 379 CPKLGTLNVSMNNITGGIPREI----G-NSSQLQALDLSLNQIVGDIPKEL-GKSNSLTKLILRGNQLTGRLPTEI---- 448 (620)
Q Consensus 379 ~~~L~~L~l~~n~l~~~~~~~~----~-~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~---- 448 (620)
++.|++|++++|.++......+ . ..++|++|++++|.++......+ ..+++|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4568888888888764322222 2 23678888888888764332222 345678888888888763322222
Q ss_pred -cCCCCCCEEEccCCcCCcc----hhhhhhCCCCCCEecCcCCcCccc----chhHhhhccCCCEEeCCCCcCcccc---
Q 043685 449 -GSLIKLEYLDFSANRFNNS----VPEILGNLLKLHYLGLSNNQFVQE----LPKELEKLVQLSLLDASHNLFGGEI--- 516 (620)
Q Consensus 449 -~~~~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~--- 516 (620)
...++|++|++++|.+++. +...+..+++|++|++++|.+.+. ++..+...++|+.|+|++|.|++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2456788888888887653 334456677788888888877543 2445566677888888888777532
Q ss_pred -chhccCCCCCCEEECCCCcCccccCccccCC---CC--CCEEE--ccCCcCc
Q 043685 517 -PFQICSLKSLEMLNLSHNNLSGSIPNCFDGM---HG--LSVID--ISDNQLQ 561 (620)
Q Consensus 517 -~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~--L~~L~--l~~N~l~ 561 (620)
...+...++|++|+|++|.|+......+... .. ++.+. +..|.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 2334456778888888887765544333322 11 55555 5555543
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=3e-13 Score=136.27 Aligned_cols=183 Identities=17% Similarity=0.140 Sum_probs=115.3
Q ss_pred CCCCCEEECCCCcccCccCcccc-----CCCCCcEEECCCCccccCCCcc-ccCCCCCCEEecCCCeecccCChhh----
Q 043685 355 YPNLTFIDLSRNNFYGEISSNWG-----KCPKLGTLNVSMNNITGGIPRE-IGNSSQLQALDLSLNQIVGDIPKEL---- 424 (620)
Q Consensus 355 l~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~---- 424 (620)
.+.|+.|++++|.++......+. ..++|++|++++|.++...... ...+++|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35688888888887654333222 2367888888888876332222 2335578888888888765433333
Q ss_pred -hccCCCcEEEccCCcccc----cCCccccCCCCCCEEEccCCcCCcc----hhhhhhCCCCCCEecCcCCcCccc----
Q 043685 425 -GKSNSLTKLILRGNQLTG----RLPTEIGSLIKLEYLDFSANRFNNS----VPEILGNLLKLHYLGLSNNQFVQE---- 491 (620)
Q Consensus 425 -~~l~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~---- 491 (620)
...++|++|++++|.++. .++..+...++|++|++++|.+++. +...+...++|++|++++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 235678888888888763 2334446677888888888887653 245566777888888888888653
Q ss_pred chhHhhhccCCCEEeCCCCcCccccchhccCC---C--CCCEEE--CCCCcCc
Q 043685 492 LPKELEKLVQLSLLDASHNLFGGEIPFQICSL---K--SLEMLN--LSHNNLS 537 (620)
Q Consensus 492 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l---~--~L~~L~--l~~n~l~ 537 (620)
+...+...++|+.|+|++|.|+......+..+ . .|+.+. +..+.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 33445566888888888888876554444432 1 155665 5555554
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=2.1e-11 Score=122.39 Aligned_cols=132 Identities=19% Similarity=0.162 Sum_probs=106.3
Q ss_pred CEEEccCC-cCCcchhhhhhCCCCCCEecCcC-CcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECC
Q 043685 455 EYLDFSAN-RFNNSVPEILGNLLKLHYLGLSN-NQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLS 532 (620)
Q Consensus 455 ~~L~ls~n-~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 532 (620)
..++.+++ .++. +|. +..+++|++|+|++ |.+.+..+..|.++++|+.|+|++|+|++..+..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35788888 8874 666 89999999999996 99988888889999999999999999999999999999999999999
Q ss_pred CCcCccccCccccCCCCCCEEEccCCcCccCCCCCcc--cCCCCccccCCCCCCCCCCC
Q 043685 533 HNNLSGSIPNCFDGMHGLSVIDISDNQLQGPVPNSTA--FRNAPVEALEGNKGLCGGVK 589 (620)
Q Consensus 533 ~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~--~~~l~~~~l~~Np~~C~~~~ 589 (620)
+|+|+++.+..|..++ |+.|+|++|++....+.... +.......+..+...|..+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~ 146 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG 146 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh
Confidence 9999987777777666 99999999999876542211 11223344556778886543
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.22 E-value=2.7e-09 Score=108.31 Aligned_cols=130 Identities=12% Similarity=0.108 Sum_probs=54.9
Q ss_pred cccCCCCCCEEecCCCeecccCChhhhccCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCC
Q 043685 399 EIGNSSQLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKL 478 (620)
Q Consensus 399 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L 478 (620)
.+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++..-..+|..+.+|+.+++..+ +......+|.++.+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3444444444444332 22233334444445555554443 22222334444444555444322 222333344444444
Q ss_pred CEecCcCCcCcccchhHhhhccCCCEEeCCCCcCccccchhccCCCCCCEEECC
Q 043685 479 HYLGLSNNQFVQELPKELEKLVQLSLLDASHNLFGGEIPFQICSLKSLEMLNLS 532 (620)
Q Consensus 479 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 532 (620)
+.+.+.++.+......+|.++.+|+.+++..+ ++.+...+|.++++|+.+.+.
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 44444444443333344444444444444332 333333444444444444443
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=2.5e-11 Score=121.92 Aligned_cols=105 Identities=21% Similarity=0.130 Sum_probs=93.9
Q ss_pred cEEEccCC-cccccCCccccCCCCCCEEEccC-CcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhccCCCEEeCC
Q 043685 431 TKLILRGN-QLTGRLPTEIGSLIKLEYLDFSA-NRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLVQLSLLDAS 508 (620)
Q Consensus 431 ~~L~l~~n-~l~~~~~~~~~~~~~L~~L~ls~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 508 (620)
..++.+++ +++ .+|. +..+++|++|+|++ |.+++..+..|..+++|+.|+|++|.+.+..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45688887 888 6787 99999999999996 99998888899999999999999999999888899999999999999
Q ss_pred CCcCccccchhccCCCCCCEEECCCCcCcc
Q 043685 509 HNLFGGEIPFQICSLKSLEMLNLSHNNLSG 538 (620)
Q Consensus 509 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 538 (620)
+|+|++..+..|..++ |+.|++++|++..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999987777777766 9999999999874
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.17 E-value=3.6e-09 Score=107.47 Aligned_cols=147 Identities=12% Similarity=0.076 Sum_probs=87.4
Q ss_pred CcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhhccC
Q 043685 349 SEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELGKSN 428 (620)
Q Consensus 349 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 428 (620)
..++....+|+.+.+..+ +.......|.++..|+.+.+..+ ++.+...+|..+.+|+.+.+..+ +.......|.++.
T Consensus 210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~ 286 (379)
T 4h09_A 210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS 286 (379)
T ss_dssp TTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred ecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc
Confidence 344555556666665433 33344455666666666666554 33344456666667777766543 3334445666777
Q ss_pred CCcEEEccCCcccccCCccccCCCCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCcCcccchhHhhhcc
Q 043685 429 SLTKLILRGNQLTGRLPTEIGSLIKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQFVQELPKELEKLV 500 (620)
Q Consensus 429 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 500 (620)
+|+.+.+.++.++..-..+|.++.+|+.++|..+ ++.....+|.++.+|+.+.+..+ +..+-..+|.++.
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 7777777766666444566777777777777543 44455566777777777777553 4444445566554
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=2e-09 Score=107.30 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=29.1
Q ss_pred ccCCCCCcEEECCCCccccCCCccccCCCCCCEEecCCCeecccCChhhh--ccCCCcEEEcc
Q 043685 376 WGKCPKLGTLNVSMNNITGGIPREIGNSSQLQALDLSLNQIVGDIPKELG--KSNSLTKLILR 436 (620)
Q Consensus 376 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~ 436 (620)
+..+|+|+.|.+++|.-. ..+. + .+++|+.|++..|.+.......+. .+|+|++|+|+
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 345566666666665211 1111 2 256666666666655433222232 45666666654
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=1.8e-09 Score=107.63 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=18.2
Q ss_pred CCCCEEECCCCcccC-c-------cCccccCCCCCcEEECCCC
Q 043685 356 PNLTFIDLSRNNFYG-E-------ISSNWGKCPKLGTLNVSMN 390 (620)
Q Consensus 356 ~~L~~L~l~~n~l~~-~-------~~~~~~~~~~L~~L~l~~n 390 (620)
..++.|.+......+ . +......+++|+.|.+...
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~ 149 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDI 149 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCc
Confidence 346667766544331 1 1122345677788777554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.64 E-value=3.4e-08 Score=88.77 Aligned_cols=112 Identities=17% Similarity=0.130 Sum_probs=52.5
Q ss_pred CCCCCCEEEccCC-cCCcc----hhhhhhCCCCCCEecCcCCcCccc----chhHhhhccCCCEEeCCCCcCccc----c
Q 043685 450 SLIKLEYLDFSAN-RFNNS----VPEILGNLLKLHYLGLSNNQFVQE----LPKELEKLVQLSLLDASHNLFGGE----I 516 (620)
Q Consensus 450 ~~~~L~~L~ls~n-~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~ 516 (620)
..+.|++|++++| .+... +...+...++|++|+|++|.+.+. +...+...++|++|+|++|.|... +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 3444444444444 44321 222333344555555555554332 122333445555555555555432 2
Q ss_pred chhccCCCCCCEEEC--CCCcCccc----cCccccCCCCCCEEEccCCcCc
Q 043685 517 PFQICSLKSLEMLNL--SHNNLSGS----IPNCFDGMHGLSVIDISDNQLQ 561 (620)
Q Consensus 517 ~~~~~~l~~L~~L~l--~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~ 561 (620)
...+...++|++|++ ++|.+... +.+.+...++|++|++++|.+.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 233444555666666 55555433 2233444456666666666553
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=5.3e-08 Score=87.46 Aligned_cols=114 Identities=14% Similarity=0.135 Sum_probs=66.9
Q ss_pred hhccCCCcEEEccCC-cccc----cCCccccCCCCCCEEEccCCcCCcc----hhhhhhCCCCCCEecCcCCcCccc---
Q 043685 424 LGKSNSLTKLILRGN-QLTG----RLPTEIGSLIKLEYLDFSANRFNNS----VPEILGNLLKLHYLGLSNNQFVQE--- 491 (620)
Q Consensus 424 ~~~l~~L~~L~l~~n-~l~~----~~~~~~~~~~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~--- 491 (620)
+...+.|++|++++| .+.. .+...+...++|++|+|++|.+.+. +...+...+.|++|++++|.+.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344555666666655 5442 1223344556677777777766543 234445556777777777777543
Q ss_pred -chhHhhhccCCCEEeC--CCCcCccc----cchhccCCCCCCEEECCCCcCc
Q 043685 492 -LPKELEKLVQLSLLDA--SHNLFGGE----IPFQICSLKSLEMLNLSHNNLS 537 (620)
Q Consensus 492 -~~~~l~~l~~L~~L~l--~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 537 (620)
+...+...++|++|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2344555667777777 66777643 2234445577777777777764
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.36 E-value=1.4e-07 Score=88.93 Aligned_cols=65 Identities=32% Similarity=0.357 Sum_probs=33.0
Q ss_pred hCCCCCCEecCcCCcCcc--cchhHhhhccCCCEEeCCCCcCcccc-chhccCCCCCCEEECCCCcCcc
Q 043685 473 GNLLKLHYLGLSNNQFVQ--ELPKELEKLVQLSLLDASHNLFGGEI-PFQICSLKSLEMLNLSHNNLSG 538 (620)
Q Consensus 473 ~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~ 538 (620)
..+++|+.|+|++|.+.+ .++..+..+++|+.|+|++|+|++.. ...+..+ +|++|+|++|++.+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence 345556666666665544 23344455566666666666655431 1122222 55556666655554
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.25 E-value=5.6e-07 Score=78.51 Aligned_cols=84 Identities=12% Similarity=0.078 Sum_probs=50.7
Q ss_pred CCCCEEEccCCcCCcchhhhhhCCCCCCEecCcCCc-CcccchhHhhhc----cCCCEEeCCCCc-CccccchhccCCCC
Q 043685 452 IKLEYLDFSANRFNNSVPEILGNLLKLHYLGLSNNQ-FVQELPKELEKL----VQLSLLDASHNL-FGGEIPFQICSLKS 525 (620)
Q Consensus 452 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l----~~L~~L~l~~n~-l~~~~~~~~~~l~~ 525 (620)
..|++||+++|.+++.....+..+++|++|+|++|. +++.--..+..+ ++|++|+|++|. |++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356677777776666555556667777777777764 443322333332 357777777763 66554455566677
Q ss_pred CCEEECCCCc
Q 043685 526 LEMLNLSHNN 535 (620)
Q Consensus 526 L~~L~l~~n~ 535 (620)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777665
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.22 E-value=4.7e-07 Score=85.38 Aligned_cols=85 Identities=21% Similarity=0.209 Sum_probs=63.0
Q ss_pred ecCcCCcCc---ccchhHhhhccCCCEEeCCCCcCccc--cchhccCCCCCCEEECCCCcCccccC-ccccCCCCCCEEE
Q 043685 481 LGLSNNQFV---QELPKELEKLVQLSLLDASHNLFGGE--IPFQICSLKSLEMLNLSHNNLSGSIP-NCFDGMHGLSVID 554 (620)
Q Consensus 481 L~l~~n~l~---~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ 554 (620)
++++.|... ..++.....+++|+.|+|++|+|++. ++..+..+++|+.|+|++|++++... ..+..+ +|++|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence 556666431 12222336789999999999999974 45667789999999999999987621 233333 999999
Q ss_pred ccCCcCccCCCC
Q 043685 555 ISDNQLQGPVPN 566 (620)
Q Consensus 555 l~~N~l~~~~~~ 566 (620)
|++|++.+.+|.
T Consensus 227 L~~Npl~~~~~~ 238 (267)
T 3rw6_A 227 LDGNSLCDTFRD 238 (267)
T ss_dssp CTTSTTGGGCSS
T ss_pred ccCCcCccccCc
Confidence 999999987663
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.07 E-value=2.5e-06 Score=74.35 Aligned_cols=82 Identities=16% Similarity=0.116 Sum_probs=35.9
Q ss_pred CCCEEecCCCeecccCChhhhccCCCcEEEccCCc-ccccCCccccCC----CCCCEEEccCCc-CCcchhhhhhCCCCC
Q 043685 405 QLQALDLSLNQIVGDIPKELGKSNSLTKLILRGNQ-LTGRLPTEIGSL----IKLEYLDFSANR-FNNSVPEILGNLLKL 478 (620)
Q Consensus 405 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~----~~L~~L~ls~n~-l~~~~~~~l~~l~~L 478 (620)
.|++||+++|.++......+..+++|++|++++|. ++..--..+..+ ++|++|+|++|. +++.....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555544333334445555555555553 332111122221 234455554442 444333334444444
Q ss_pred CEecCcCC
Q 043685 479 HYLGLSNN 486 (620)
Q Consensus 479 ~~L~l~~n 486 (620)
++|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 44444444
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.67 E-value=5.8e-05 Score=62.74 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=38.1
Q ss_pred EEeCCCCcCc-cccchhccCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcCccCC
Q 043685 504 LLDASHNLFG-GEIPFQICSLKSLEMLNLSHNNLSGSIPNCFDGMHGLSVIDISDNQLQGPV 564 (620)
Q Consensus 504 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 564 (620)
.++.+++.++ ..+|..+ .++|+.|+|++|+|+.+.+..|..+++|+.|+|++|++....
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence 6677777765 2333322 235777777777777666667777777777777777766433
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.66 E-value=7.4e-05 Score=66.38 Aligned_cols=110 Identities=15% Similarity=0.174 Sum_probs=54.8
Q ss_pred CCCCCEEEccCC-cCCcc----hhhhhhCCCCCCEecCcCCcCccc----chhHhhhccCCCEEeCCCCcCccc----cc
Q 043685 451 LIKLEYLDFSAN-RFNNS----VPEILGNLLKLHYLGLSNNQFVQE----LPKELEKLVQLSLLDASHNLFGGE----IP 517 (620)
Q Consensus 451 ~~~L~~L~ls~n-~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~ 517 (620)
-+.|++|++++| .+.+. +...+...+.|+.|+|++|.+.+. +.+.+..-+.|+.|+|++|.|... +.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 344555555543 44321 233444455566666666655432 223344445666666666666533 22
Q ss_pred hhccCCCCCCEEECCCCc---Cccc----cCccccCCCCCCEEEccCCcC
Q 043685 518 FQICSLKSLEMLNLSHNN---LSGS----IPNCFDGMHGLSVIDISDNQL 560 (620)
Q Consensus 518 ~~~~~l~~L~~L~l~~n~---l~~~----~~~~~~~l~~L~~L~l~~N~l 560 (620)
.++...+.|++|+|++|. +... +.+.+..-++|+.|+++.|.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 334445566666666542 2211 223445556677777766653
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.41 E-value=0.00017 Score=64.02 Aligned_cols=111 Identities=14% Similarity=0.218 Sum_probs=59.8
Q ss_pred ccCCCcEEEccCC-cccc----cCCccccCCCCCCEEEccCCcCCcc----hhhhhhCCCCCCEecCcCCcCccc----c
Q 043685 426 KSNSLTKLILRGN-QLTG----RLPTEIGSLIKLEYLDFSANRFNNS----VPEILGNLLKLHYLGLSNNQFVQE----L 492 (620)
Q Consensus 426 ~l~~L~~L~l~~n-~l~~----~~~~~~~~~~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~ 492 (620)
.-+.|++|+++++ .+.. .+...+..-..|++|+|++|.+.+. +...+...+.|++|+|++|.+... +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3445555666553 4431 1223344455666666666666542 344455566677777777766543 2
Q ss_pred hhHhhhccCCCEEeCCCC---cCccc----cchhccCCCCCCEEECCCCcC
Q 043685 493 PKELEKLVQLSLLDASHN---LFGGE----IPFQICSLKSLEMLNLSHNNL 536 (620)
Q Consensus 493 ~~~l~~l~~L~~L~l~~n---~l~~~----~~~~~~~l~~L~~L~l~~n~l 536 (620)
.+.+..-+.|+.|+|++| .+... +...+..-+.|+.|+++.|.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 233444456777777654 23321 233455566777777766654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.72 E-value=0.0029 Score=52.30 Aligned_cols=36 Identities=19% Similarity=0.101 Sum_probs=17.8
Q ss_pred CCCEEeCCCCcCccccchhccCCCCCCEEECCCCcC
Q 043685 501 QLSLLDASHNLFGGEIPFQICSLKSLEMLNLSHNNL 536 (620)
Q Consensus 501 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 536 (620)
+|+.|+|++|+|+.+.+..|..+++|+.|+|++|++
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 345555555555544444444455555555555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=66.63 E-value=16 Score=27.86 Aligned_cols=47 Identities=13% Similarity=0.072 Sum_probs=25.4
Q ss_pred ccccccCcccCCCCCCCEEECCCCcccCccCccccCCCCCcEEECCCC
Q 043685 343 NLTGNISEALGIYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMN 390 (620)
Q Consensus 343 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 390 (620)
.++.+...+|..+.+|+.+.|-.+ ++.+...+|.++.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344444555666666666666442 33344455666666666665543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=65.32 E-value=16 Score=27.80 Aligned_cols=44 Identities=11% Similarity=0.017 Sum_probs=28.2
Q ss_pred CCcCcccccCCCCCCEEEccCCcCCcccCccCCCCCCCCEEeCCC
Q 043685 116 NESFPPFLGNLSNIVRLYINNNSLSSSIPTNIGNLKFLFELDLSN 160 (620)
Q Consensus 116 ~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~l~~ 160 (620)
+.+...+|.+|..|+.+.+-.+ ++.+...+|.+|.+|+.+.+..
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3444566777777777777654 3335556677777777776654
Done!