BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043686
         (282 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4EWP|A Chain A, Crystal Structure Of Fabh From Micrococcus Luteus
 pdb|4EWP|B Chain B, Crystal Structure Of Fabh From Micrococcus Luteus
 pdb|4EWP|C Chain C, Crystal Structure Of Fabh From Micrococcus Luteus
 pdb|4EWP|D Chain D, Crystal Structure Of Fabh From Micrococcus Luteus
 pdb|4EWP|E Chain E, Crystal Structure Of Fabh From Micrococcus Luteus
 pdb|4EWP|F Chain F, Crystal Structure Of Fabh From Micrococcus Luteus
          Length = 350

 Score = 31.2 bits (69), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 127 SAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKV-HVFGTGDVSC-PRSEGIFW 178
           S E  I  S W +   +W  ++  +S +E R+ V H   TGD S    +EG+ W
Sbjct: 180 SDEPGISPSVWGSDGERWSTISMTHSQLELRDAVEHARTTGDASAITGAEGMLW 233


>pdb|2HSN|A Chain A, Structural Basis Of Yeast Aminoacyl-Trna Synthetase
           Complex Formation Revealed By Crystal Structures Of Two
           Binary Sub- Complexes
          Length = 160

 Score = 30.0 bits (66), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 102 EGCRIHVQVKTGKRVIDQLCELK-PLSAENYIMLSNWYA 139
           E  + HV+V T K + + L ELK PL+  + I+ +N YA
Sbjct: 95  ELPQQHVEVLTNKAIENYLVELKEPLTTTDLILFANVYA 133


>pdb|2EPG|A Chain A, Crystal Structure Of Ttha1785
 pdb|2EPG|B Chain B, Crystal Structure Of Ttha1785
          Length = 487

 Score = 28.9 bits (63), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 198 FSLHYVDEERKWTQIGHSEILALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMV 256
             + YVDE        + E  AL+FGL   QV   IH         +C D+ +   K+ 
Sbjct: 217 LEVQYVDEV-------YDEEAALAFGLFKGQVTVLIHTGSRGLGHQVCQDYVERFLKVA 268


>pdb|3ALZ|B Chain B, Crystal Structure Of The Measles Virus Hemagglutinin Bound
           To Its Cellular Receptor Slam (Form I)
          Length = 149

 Score = 28.5 bits (62), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 9/56 (16%)

Query: 211 QIGHSEILALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPS 266
           Q+G   +L L+   I+T +  +IH+   +         AK++   VE +I+  DPS
Sbjct: 38  QLGSDVLLPLTHERINTSMNKSIHIVVTM---------AKSLENSVENKIVSLDPS 84


>pdb|3ALW|A Chain A, Crystal Structure Of The Measles Virus Hemagglutinin Bound
           To Its Cellular Receptor Slam (Form I,
           Mv-H-Slam(N102hR108Y) FUSION)
          Length = 559

 Score = 27.7 bits (60), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 9/56 (16%)

Query: 211 QIGHSEILALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPS 266
           Q+G   +L L+   I+T +  +IH+   +         AK++   VE +I+  DPS
Sbjct: 448 QLGSDVLLPLTHERINTSMNKSIHIVVTM---------AKSLENSVENKIVSLDPS 494


>pdb|3ALX|A Chain A, Crystal Structure Of The Measles Virus Hemagglutinin Bound
           To Its Cellular Receptor Slam
           (Mv-H(L482r)-Slam(N102hR108Y) FUSION)
 pdb|3ALX|B Chain B, Crystal Structure Of The Measles Virus Hemagglutinin Bound
           To Its Cellular Receptor Slam
           (Mv-H(L482r)-Slam(N102hR108Y) FUSION)
 pdb|3ALX|C Chain C, Crystal Structure Of The Measles Virus Hemagglutinin Bound
           To Its Cellular Receptor Slam
           (Mv-H(L482r)-Slam(N102hR108Y) FUSION)
 pdb|3ALX|D Chain D, Crystal Structure Of The Measles Virus Hemagglutinin Bound
           To Its Cellular Receptor Slam
           (Mv-H(L482r)-Slam(N102hR108Y) FUSION)
          Length = 559

 Score = 27.7 bits (60), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 9/56 (16%)

Query: 211 QIGHSEILALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPS 266
           Q+G   +L L+   I+T +  +IH+   +         AK++   VE +I+  DPS
Sbjct: 448 QLGSDVLLPLTHERINTSMNKSIHIVVTM---------AKSLENSVENKIVSLDPS 494


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.138    0.446 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,114,788
Number of Sequences: 62578
Number of extensions: 299725
Number of successful extensions: 692
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 689
Number of HSP's gapped (non-prelim): 7
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)