Query 043686
Match_columns 282
No_of_seqs 215 out of 2472
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 07:21:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 2E-54 4.3E-59 413.1 29.6 281 1-282 397-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 3.9E-50 8.5E-55 391.5 30.2 278 1-280 560-857 (857)
3 PLN03218 maturation of RBCL 1; 100.0 6.3E-44 1.4E-48 347.0 8.8 273 1-281 443-735 (1060)
4 PLN03081 pentatricopeptide (PP 100.0 6.4E-43 1.4E-47 334.0 10.3 269 1-280 195-509 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 2.2E-42 4.8E-47 337.2 12.4 268 1-280 158-470 (857)
6 PLN03218 maturation of RBCL 1; 100.0 9.8E-43 2.1E-47 338.7 8.9 273 1-281 478-770 (1060)
7 PRK11788 tetratricopeptide rep 99.6 3.1E-15 6.8E-20 133.8 10.6 255 3-266 77-354 (389)
8 PRK11788 tetratricopeptide rep 99.5 5.7E-14 1.2E-18 125.7 10.4 259 5-276 45-326 (389)
9 PF13041 PPR_2: PPR repeat fam 99.5 2.2E-14 4.9E-19 89.6 5.2 47 60-106 1-50 (50)
10 TIGR02917 PEP_TPR_lipo putativ 99.5 3.7E-13 8E-18 131.5 12.7 248 4-259 542-800 (899)
11 PF13041 PPR_2: PPR repeat fam 99.5 1.3E-13 2.9E-18 86.1 5.5 48 92-140 1-50 (50)
12 TIGR02917 PEP_TPR_lipo putativ 99.4 1.1E-12 2.3E-17 128.2 12.7 268 2-280 608-886 (899)
13 PF14432 DYW_deaminase: DYW fa 99.3 6.4E-12 1.4E-16 92.4 8.8 98 161-272 9-116 (116)
14 PF12854 PPR_1: PPR repeat 99.3 4.7E-12 1E-16 71.9 4.2 34 56-89 1-34 (34)
15 KOG4422 Uncharacterized conser 99.1 5.1E-10 1.1E-14 97.1 8.8 150 1-151 213-379 (625)
16 PF12854 PPR_1: PPR repeat 99.1 1.8E-10 3.9E-15 65.4 3.5 32 90-121 3-34 (34)
17 TIGR00990 3a0801s09 mitochondr 99.0 2.9E-09 6.3E-14 101.1 12.2 242 9-257 308-570 (615)
18 PRK15174 Vi polysaccharide exp 99.0 3E-09 6.4E-14 101.5 11.5 245 4-258 119-381 (656)
19 TIGR02521 type_IV_pilW type IV 99.0 4.6E-08 9.9E-13 80.1 16.3 144 3-149 39-190 (234)
20 PRK15174 Vi polysaccharide exp 99.0 1.1E-08 2.3E-13 97.7 13.8 173 5-178 187-373 (656)
21 KOG4626 O-linked N-acetylgluco 99.0 6.3E-09 1.4E-13 94.2 11.3 184 4-196 295-489 (966)
22 PF13429 TPR_15: Tetratricopep 98.9 4.4E-09 9.5E-14 90.1 9.6 150 2-151 117-271 (280)
23 KOG4422 Uncharacterized conser 98.9 2.7E-08 5.9E-13 86.6 14.2 172 5-211 125-327 (625)
24 TIGR00990 3a0801s09 mitochondr 98.9 5.7E-08 1.2E-12 92.4 16.3 147 4-153 340-492 (615)
25 KOG4626 O-linked N-acetylgluco 98.9 1.5E-08 3.2E-13 91.8 9.8 243 4-255 125-380 (966)
26 PRK09782 bacteriophage N4 rece 98.8 1.9E-07 4.1E-12 92.1 17.0 141 6-149 520-664 (987)
27 TIGR02521 type_IV_pilW type IV 98.8 3.4E-07 7.3E-12 74.9 16.2 146 3-150 73-225 (234)
28 PRK09782 bacteriophage N4 rece 98.8 7.7E-08 1.7E-12 94.9 13.4 148 4-154 551-703 (987)
29 PRK12370 invasion protein regu 98.8 1.1E-07 2.4E-12 89.1 13.8 176 8-188 317-504 (553)
30 PRK11447 cellulose synthase su 98.8 1.1E-07 2.4E-12 96.5 13.8 147 4-153 360-554 (1157)
31 KOG4318 Bicoid mRNA stability 98.8 2.8E-08 6.1E-13 93.1 8.6 180 16-208 11-283 (1088)
32 PF13429 TPR_15: Tetratricopep 98.7 4.7E-09 1E-13 89.9 1.7 198 7-213 56-265 (280)
33 PRK11447 cellulose synthase su 98.6 1.9E-07 4.2E-12 94.7 11.5 244 4-257 278-557 (1157)
34 COG3063 PilF Tfp pilus assembl 98.6 2.9E-06 6.3E-11 68.5 13.8 141 4-147 44-192 (250)
35 PRK12370 invasion protein regu 98.6 5.7E-07 1.2E-11 84.4 11.4 172 9-187 275-467 (553)
36 KOG1126 DNA-binding cell divis 98.5 1.4E-07 3E-12 86.1 6.4 196 3-204 361-598 (638)
37 PRK15359 type III secretion sy 98.5 2.9E-06 6.2E-11 65.2 12.5 118 15-137 13-135 (144)
38 PRK10049 pgaA outer membrane p 98.5 5.5E-06 1.2E-10 80.8 15.9 181 3-189 245-455 (765)
39 KOG1840 Kinesin light chain [C 98.4 6.3E-07 1.4E-11 81.8 8.0 150 2-151 206-390 (508)
40 PRK10049 pgaA outer membrane p 98.4 1.4E-05 3E-10 78.0 16.1 148 3-153 23-175 (765)
41 PRK11189 lipoprotein NlpI; Pro 98.3 2.1E-05 4.6E-10 67.9 14.9 143 8-151 39-188 (296)
42 KOG1126 DNA-binding cell divis 98.3 5.2E-06 1.1E-10 76.1 11.3 115 40-154 498-617 (638)
43 TIGR00756 PPR pentatricopeptid 98.3 8.1E-07 1.8E-11 50.3 3.3 30 96-125 2-33 (35)
44 KOG1155 Anaphase-promoting com 98.3 3.1E-06 6.7E-11 74.6 8.3 188 5-192 272-501 (559)
45 PRK11189 lipoprotein NlpI; Pro 98.2 6E-05 1.3E-09 65.1 15.4 176 4-190 73-265 (296)
46 PRK15359 type III secretion sy 98.2 1.1E-05 2.4E-10 62.0 9.5 96 56-153 20-117 (144)
47 PRK10747 putative protoheme IX 98.2 1.2E-05 2.6E-10 72.5 11.0 240 8-259 97-358 (398)
48 PRK10370 formate-dependent nit 98.2 6.5E-05 1.4E-09 60.9 14.0 88 62-149 73-165 (198)
49 TIGR03302 OM_YfiO outer membra 98.2 3.9E-05 8.5E-10 63.8 13.1 146 3-151 41-226 (235)
50 PRK10747 putative protoheme IX 98.2 3.7E-05 7.9E-10 69.3 13.8 147 2-151 194-351 (398)
51 PF04733 Coatomer_E: Coatomer 98.2 1E-05 2.2E-10 69.5 9.3 140 10-152 81-225 (290)
52 TIGR00756 PPR pentatricopeptid 98.2 1.7E-06 3.7E-11 48.9 3.1 31 63-93 1-34 (35)
53 PRK14574 hmsH outer membrane p 98.2 7.4E-05 1.6E-09 72.8 16.0 150 2-153 299-475 (822)
54 PRK10370 formate-dependent nit 98.2 6.5E-05 1.4E-09 60.9 13.4 127 8-137 52-186 (198)
55 PF13812 PPR_3: Pentatricopept 98.1 2.9E-06 6.2E-11 47.8 3.5 27 95-121 2-28 (34)
56 COG5010 TadD Flp pilus assembl 98.1 0.00013 2.8E-09 60.1 14.3 151 27-177 62-222 (257)
57 PF01535 PPR: PPR repeat; Int 98.1 2.3E-06 5E-11 47.0 2.8 26 96-121 2-27 (31)
58 PRK14574 hmsH outer membrane p 98.1 0.00014 3E-09 70.9 16.6 150 2-151 334-507 (822)
59 PRK15179 Vi polysaccharide bio 98.1 6.9E-05 1.5E-09 71.6 14.2 121 29-149 84-209 (694)
60 KOG4318 Bicoid mRNA stability 98.1 9.5E-07 2.1E-11 83.1 1.5 56 56-112 19-101 (1088)
61 KOG1155 Anaphase-promoting com 98.1 9.9E-05 2.1E-09 65.4 13.7 145 5-152 340-490 (559)
62 PF04733 Coatomer_E: Coatomer 98.1 5.9E-05 1.3E-09 64.8 12.3 51 72-125 112-162 (290)
63 PF01535 PPR: PPR repeat; Int 98.1 3.7E-06 8E-11 46.2 2.8 27 63-89 1-27 (31)
64 COG2956 Predicted N-acetylgluc 98.1 3E-05 6.5E-10 65.7 9.2 117 6-125 46-172 (389)
65 TIGR02552 LcrH_SycD type III s 98.0 0.00017 3.7E-09 54.3 12.5 109 17-128 5-119 (135)
66 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.0001 2.2E-09 65.7 12.2 121 35-157 173-297 (395)
67 TIGR00540 hemY_coli hemY prote 98.0 3E-05 6.6E-10 70.1 9.0 200 5-212 163-386 (409)
68 PRK15363 pathogenicity island 98.0 7.3E-05 1.6E-09 57.5 9.6 123 57-188 28-154 (157)
69 PF13812 PPR_3: Pentatricopept 98.0 8.4E-06 1.8E-10 45.8 3.2 28 62-89 1-28 (34)
70 cd05804 StaR_like StaR_like; a 97.9 0.0004 8.6E-09 61.3 14.6 146 5-153 53-211 (355)
71 KOG1840 Kinesin light chain [C 97.9 0.00019 4.1E-09 65.9 12.5 147 3-149 291-471 (508)
72 KOG2003 TPR repeat-containing 97.9 0.00043 9.3E-09 61.4 14.1 135 7-143 570-709 (840)
73 KOG0547 Translocase of outer m 97.9 8.4E-05 1.8E-09 66.2 9.5 144 6-152 337-486 (606)
74 cd00189 TPR Tetratricopeptide 97.9 0.00013 2.7E-09 50.0 8.6 86 65-150 3-90 (100)
75 COG3071 HemY Uncharacterized e 97.9 0.00075 1.6E-08 58.8 14.8 146 2-149 194-382 (400)
76 COG5010 TadD Flp pilus assembl 97.9 0.00041 8.9E-09 57.2 12.5 145 5-151 76-225 (257)
77 KOG1128 Uncharacterized conser 97.9 8.6E-05 1.9E-09 69.0 9.3 185 2-194 431-623 (777)
78 TIGR02552 LcrH_SycD type III s 97.9 0.00015 3.2E-09 54.6 9.4 97 57-153 11-110 (135)
79 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00046 1E-08 50.4 11.6 101 33-133 4-115 (119)
80 PRK15179 Vi polysaccharide bio 97.9 0.00049 1.1E-08 65.9 14.6 126 4-132 95-226 (694)
81 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00022 4.7E-09 63.6 11.4 115 2-121 176-295 (395)
82 COG4783 Putative Zn-dependent 97.8 0.00022 4.8E-09 63.6 11.2 126 43-180 318-448 (484)
83 cd00189 TPR Tetratricopeptide 97.7 0.00033 7.1E-09 47.8 8.9 92 34-125 3-99 (100)
84 KOG1070 rRNA processing protei 97.7 0.00051 1.1E-08 68.2 11.9 191 2-196 1465-1669(1710)
85 COG3063 PilF Tfp pilus assembl 97.7 0.001 2.2E-08 54.0 11.7 90 64-153 37-128 (250)
86 KOG1129 TPR repeat-containing 97.7 0.00047 1E-08 58.8 9.9 142 3-147 231-377 (478)
87 PF13432 TPR_16: Tetratricopep 97.6 0.00027 5.8E-09 46.1 6.7 60 68-127 3-64 (65)
88 PF12569 NARP1: NMDA receptor- 97.6 0.001 2.2E-08 61.6 12.4 172 3-180 46-285 (517)
89 PRK02603 photosystem I assembl 97.6 0.0019 4.1E-08 51.1 12.3 109 32-143 36-166 (172)
90 PLN03088 SGT1, suppressor of 97.6 0.001 2.2E-08 59.0 11.9 96 41-136 12-112 (356)
91 KOG1129 TPR repeat-containing 97.6 0.00012 2.6E-09 62.4 5.4 216 37-258 229-458 (478)
92 KOG1173 Anaphase-promoting com 97.6 0.0012 2.7E-08 59.9 12.1 120 5-127 390-522 (611)
93 PF10037 MRP-S27: Mitochondria 97.6 0.00036 7.7E-09 62.7 8.6 125 17-141 50-186 (429)
94 KOG0553 TPR repeat-containing 97.6 0.00052 1.1E-08 57.8 8.8 96 41-136 91-191 (304)
95 CHL00033 ycf3 photosystem I as 97.6 0.002 4.3E-08 50.7 11.8 131 11-144 15-167 (168)
96 PF08579 RPM2: Mitochondrial r 97.6 0.00076 1.6E-08 48.7 8.3 71 2-73 32-115 (120)
97 KOG0547 Translocase of outer m 97.5 0.00063 1.4E-08 60.8 9.5 142 8-153 407-562 (606)
98 KOG2076 RNA polymerase III tra 97.5 0.0016 3.5E-08 62.1 12.6 118 5-125 150-272 (895)
99 TIGR00540 hemY_coli hemY prote 97.5 0.0028 6.2E-08 57.3 13.5 186 2-188 194-401 (409)
100 PF12895 Apc3: Anaphase-promot 97.5 7.5E-05 1.6E-09 51.6 2.4 75 75-150 2-80 (84)
101 KOG3081 Vesicle coat complex C 97.5 0.0031 6.8E-08 52.4 11.8 134 5-146 118-259 (299)
102 PF13414 TPR_11: TPR repeat; P 97.4 0.00048 1E-08 45.4 6.0 64 62-125 3-69 (69)
103 COG4783 Putative Zn-dependent 97.4 0.0029 6.2E-08 56.7 12.3 115 5-122 316-436 (484)
104 KOG1173 Anaphase-promoting com 97.4 0.0018 4E-08 58.8 10.9 113 41-153 390-514 (611)
105 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.002 4.4E-08 46.9 9.6 90 63-152 3-100 (119)
106 TIGR03302 OM_YfiO outer membra 97.4 0.0021 4.5E-08 53.3 10.8 120 3-125 78-234 (235)
107 PF12921 ATP13: Mitochondrial 97.4 0.0018 3.9E-08 48.4 9.0 26 30-55 1-26 (126)
108 PF10037 MRP-S27: Mitochondria 97.4 0.0032 6.9E-08 56.7 12.0 103 4-107 75-186 (429)
109 cd05804 StaR_like StaR_like; a 97.4 0.012 2.7E-07 51.7 15.9 180 5-188 16-213 (355)
110 PF13414 TPR_11: TPR repeat; P 97.3 0.00078 1.7E-08 44.3 5.7 59 93-151 2-61 (69)
111 PF14559 TPR_19: Tetratricopep 97.3 0.00045 9.8E-09 45.3 4.5 60 73-133 2-63 (68)
112 PLN03088 SGT1, suppressor of 97.3 0.0013 2.9E-08 58.3 8.8 85 69-153 9-95 (356)
113 KOG1125 TPR repeat-containing 97.3 0.0049 1.1E-07 56.3 11.9 90 60-149 428-519 (579)
114 PRK02603 photosystem I assembl 97.3 0.0033 7.3E-08 49.6 9.8 87 62-148 35-126 (172)
115 PF09976 TPR_21: Tetratricopep 97.3 0.017 3.6E-07 44.2 13.4 79 70-149 56-139 (145)
116 CHL00033 ycf3 photosystem I as 97.2 0.0041 8.8E-08 48.9 10.2 82 62-143 35-121 (168)
117 PF05843 Suf: Suppressor of fo 97.2 0.0053 1.1E-07 52.6 11.3 134 2-138 8-150 (280)
118 PF12895 Apc3: Anaphase-promot 97.2 0.00095 2.1E-08 46.0 5.5 76 8-86 2-82 (84)
119 KOG2003 TPR repeat-containing 97.2 0.012 2.5E-07 52.6 13.1 115 39-154 566-686 (840)
120 PF12569 NARP1: NMDA receptor- 97.2 0.017 3.6E-07 53.7 14.6 142 13-158 129-292 (517)
121 PF09976 TPR_21: Tetratricopep 97.2 0.01 2.3E-07 45.3 11.3 111 7-120 23-144 (145)
122 PF14559 TPR_19: Tetratricopep 97.1 0.00093 2E-08 43.8 4.2 50 105-154 2-51 (68)
123 KOG0495 HAT repeat protein [RN 97.1 0.021 4.6E-07 53.2 13.9 144 7-153 596-744 (913)
124 COG2956 Predicted N-acetylgluc 97.0 0.018 3.9E-07 49.3 12.2 188 4-195 78-283 (389)
125 KOG2076 RNA polymerase III tra 97.0 0.014 3.1E-07 55.9 12.4 113 43-155 391-510 (895)
126 KOG1915 Cell cycle control pro 97.0 0.016 3.4E-07 52.1 12.0 110 44-153 154-269 (677)
127 PRK10153 DNA-binding transcrip 97.0 0.012 2.6E-07 54.7 11.9 66 62-127 420-486 (517)
128 KOG1125 TPR repeat-containing 96.9 0.013 2.7E-07 53.7 11.1 139 11-149 410-563 (579)
129 PLN02789 farnesyltranstransfer 96.9 0.046 9.9E-07 47.8 14.3 135 4-141 46-189 (320)
130 KOG1915 Cell cycle control pro 96.9 0.019 4.2E-07 51.6 11.8 76 9-87 155-232 (677)
131 PF13371 TPR_9: Tetratricopept 96.9 0.0056 1.2E-07 40.6 6.8 60 70-129 3-64 (73)
132 PRK14720 transcript cleavage f 96.8 0.016 3.6E-07 56.7 11.9 121 27-149 26-170 (906)
133 PRK15363 pathogenicity island 96.8 0.013 2.8E-07 45.2 8.9 88 36-123 40-132 (157)
134 COG3071 HemY Uncharacterized e 96.8 0.028 6.1E-07 49.3 11.7 112 3-121 271-388 (400)
135 KOG1128 Uncharacterized conser 96.8 0.003 6.5E-08 59.1 6.1 176 3-196 406-588 (777)
136 KOG0495 HAT repeat protein [RN 96.7 0.018 3.8E-07 53.7 10.6 140 8-149 563-706 (913)
137 PF13432 TPR_16: Tetratricopep 96.7 0.0028 6E-08 41.2 4.2 53 100-152 3-55 (65)
138 KOG3616 Selective LIM binding 96.7 0.008 1.7E-07 56.6 8.5 106 3-118 740-848 (1636)
139 KOG1174 Anaphase-promoting com 96.7 0.0089 1.9E-07 52.7 8.3 142 5-149 206-389 (564)
140 PF13431 TPR_17: Tetratricopep 96.7 0.0023 5E-08 35.9 3.2 33 117-149 2-34 (34)
141 PF13428 TPR_14: Tetratricopep 96.7 0.0068 1.5E-07 36.1 5.3 40 96-135 3-42 (44)
142 PF12688 TPR_5: Tetratrico pep 96.7 0.039 8.4E-07 40.8 10.3 82 5-87 11-100 (120)
143 PF06239 ECSIT: Evolutionarily 96.6 0.022 4.8E-07 46.2 9.1 111 28-155 44-166 (228)
144 PF05843 Suf: Suppressor of fo 96.6 0.023 5E-07 48.7 9.9 117 32-149 2-128 (280)
145 PF12921 ATP13: Mitochondrial 96.5 0.043 9.2E-07 41.0 9.9 81 61-141 1-101 (126)
146 KOG2002 TPR-containing nuclear 96.5 0.04 8.8E-07 53.4 11.8 147 4-153 208-367 (1018)
147 KOG0548 Molecular co-chaperone 96.5 0.019 4E-07 52.2 9.1 99 40-138 11-114 (539)
148 KOG1174 Anaphase-promoting com 96.5 0.11 2.3E-06 46.2 13.3 141 4-149 343-492 (564)
149 PF13424 TPR_12: Tetratricopep 96.5 0.012 2.6E-07 39.6 6.2 61 62-122 5-74 (78)
150 PRK10153 DNA-binding transcrip 96.5 0.06 1.3E-06 50.2 12.6 125 26-151 332-476 (517)
151 PF08579 RPM2: Mitochondrial r 96.4 0.049 1.1E-06 39.5 9.2 73 67-140 30-116 (120)
152 KOG0553 TPR repeat-containing 96.4 0.027 5.9E-07 47.7 9.1 92 5-99 91-187 (304)
153 KOG3616 Selective LIM binding 96.4 0.048 1E-06 51.7 11.2 131 3-149 773-929 (1636)
154 KOG4162 Predicted calmodulin-b 96.4 0.049 1.1E-06 51.6 11.3 115 35-149 654-775 (799)
155 PF13371 TPR_9: Tetratricopept 96.4 0.0063 1.4E-07 40.3 4.3 52 102-153 3-54 (73)
156 PF06239 ECSIT: Evolutionarily 96.3 0.029 6.2E-07 45.6 8.3 97 6-121 63-162 (228)
157 KOG3785 Uncharacterized conser 96.3 0.04 8.6E-07 47.9 9.6 147 4-154 294-454 (557)
158 PRK10803 tol-pal system protei 96.3 0.065 1.4E-06 45.4 10.7 96 32-127 144-250 (263)
159 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.018 3.9E-07 51.8 7.4 64 61-124 74-142 (453)
160 KOG1070 rRNA processing protei 96.1 0.1 2.2E-06 52.8 12.4 144 8-154 1510-1660(1710)
161 PRK10803 tol-pal system protei 96.0 0.042 9.1E-07 46.6 8.5 92 62-153 143-242 (263)
162 KOG2053 Mitochondrial inherita 96.0 0.17 3.6E-06 48.9 13.0 133 5-141 19-157 (932)
163 PRK15331 chaperone protein Sic 96.0 0.1 2.3E-06 40.5 9.8 99 56-154 30-131 (165)
164 KOG3081 Vesicle coat complex C 96.0 0.21 4.6E-06 41.8 12.0 110 39-151 116-230 (299)
165 KOG1156 N-terminal acetyltrans 96.0 0.11 2.4E-06 48.4 11.3 168 4-177 228-459 (700)
166 PF03704 BTAD: Bacterial trans 96.0 0.16 3.4E-06 38.7 10.8 57 95-151 63-119 (146)
167 KOG1127 TPR repeat-containing 95.9 0.095 2.1E-06 51.2 10.8 141 11-154 474-622 (1238)
168 COG4235 Cytochrome c biogenesi 95.9 0.15 3.2E-06 43.3 10.8 105 30-135 155-267 (287)
169 KOG3785 Uncharacterized conser 95.8 0.11 2.4E-06 45.3 10.0 88 37-125 399-492 (557)
170 PLN02789 farnesyltranstransfer 95.8 0.22 4.7E-06 43.6 12.0 122 33-154 39-168 (320)
171 KOG3060 Uncharacterized conser 95.7 0.31 6.7E-06 40.6 11.9 129 7-138 64-198 (289)
172 PF04840 Vps16_C: Vps16, C-ter 95.7 0.13 2.7E-06 45.0 10.3 106 63-178 178-283 (319)
173 KOG1156 N-terminal acetyltrans 95.7 0.23 4.9E-06 46.5 11.9 221 32-257 144-399 (700)
174 COG4700 Uncharacterized protei 95.6 0.95 2.1E-05 36.1 13.6 122 26-148 84-213 (251)
175 KOG2002 TPR-containing nuclear 95.5 0.22 4.8E-06 48.6 11.9 132 5-137 280-423 (1018)
176 PF03704 BTAD: Bacterial trans 95.5 0.073 1.6E-06 40.6 7.4 58 64-121 64-123 (146)
177 PRK14720 transcript cleavage f 95.5 0.14 3.1E-06 50.4 10.8 116 1-121 37-176 (906)
178 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.13 2.8E-06 46.4 9.5 60 30-89 74-139 (453)
179 KOG1914 mRNA cleavage and poly 95.4 0.64 1.4E-05 42.8 13.7 137 7-145 378-527 (656)
180 PF04840 Vps16_C: Vps16, C-ter 95.4 0.27 5.9E-06 42.9 11.2 106 32-150 178-284 (319)
181 PRK10866 outer membrane biogen 95.3 0.85 1.8E-05 38.2 13.7 143 5-150 42-234 (243)
182 PF00515 TPR_1: Tetratricopept 95.3 0.042 9.2E-07 30.3 4.0 32 95-126 2-33 (34)
183 KOG0624 dsRNA-activated protei 95.3 1.8 4E-05 37.8 16.5 180 4-186 115-336 (504)
184 PF12688 TPR_5: Tetratrico pep 95.2 0.22 4.8E-06 36.8 8.7 80 41-120 11-101 (120)
185 KOG4162 Predicted calmodulin-b 95.2 0.36 7.9E-06 46.0 11.8 122 4-128 659-788 (799)
186 PF13424 TPR_12: Tetratricopep 95.2 0.046 9.9E-07 36.7 4.7 56 32-87 6-71 (78)
187 KOG4340 Uncharacterized conser 95.2 0.95 2.1E-05 38.8 13.1 249 4-271 19-283 (459)
188 COG5107 RNA14 Pre-mRNA 3'-end 95.1 0.36 7.7E-06 43.5 11.0 132 7-141 409-548 (660)
189 KOG2376 Signal recognition par 95.0 0.77 1.7E-05 42.7 13.1 114 2-121 19-137 (652)
190 smart00299 CLH Clathrin heavy 95.0 1.1 2.4E-05 33.7 13.1 123 2-140 14-137 (140)
191 PRK04841 transcriptional regul 94.8 0.86 1.9E-05 45.6 14.3 146 5-151 462-635 (903)
192 KOG3060 Uncharacterized conser 94.7 2.1 4.7E-05 35.8 14.0 138 8-149 25-175 (289)
193 PF13512 TPR_18: Tetratricopep 94.7 0.3 6.4E-06 37.1 8.2 112 72-195 20-137 (142)
194 COG4235 Cytochrome c biogenesi 94.6 0.25 5.5E-06 42.0 8.6 93 61-153 155-252 (287)
195 PF07719 TPR_2: Tetratricopept 94.5 0.12 2.7E-06 28.2 4.6 33 95-127 2-34 (34)
196 KOG4340 Uncharacterized conser 94.5 1.4 3E-05 37.8 12.5 145 6-153 155-335 (459)
197 PF00637 Clathrin: Region in C 94.3 0.0052 1.1E-07 46.8 -2.1 128 1-143 13-140 (143)
198 KOG0624 dsRNA-activated protei 94.1 1.3 2.8E-05 38.7 11.7 141 4-149 47-210 (504)
199 KOG2796 Uncharacterized conser 94.0 1.4 3.1E-05 37.1 11.3 117 9-126 191-318 (366)
200 COG5107 RNA14 Pre-mRNA 3'-end 93.7 0.71 1.5E-05 41.7 9.6 118 31-149 397-523 (660)
201 KOG0985 Vesicle coat protein c 93.6 0.59 1.3E-05 46.2 9.6 101 5-118 1114-1218(1666)
202 COG3898 Uncharacterized membra 93.5 3.7 8E-05 36.6 13.5 139 7-149 132-284 (531)
203 KOG0548 Molecular co-chaperone 93.4 0.2 4.4E-06 45.7 6.0 85 69-153 9-95 (539)
204 KOG1914 mRNA cleavage and poly 93.4 0.56 1.2E-05 43.2 8.7 98 56-155 361-462 (656)
205 PF07035 Mic1: Colon cancer-as 93.4 3.1 6.7E-05 32.6 13.4 101 15-121 14-116 (167)
206 KOG2376 Signal recognition par 93.2 2.8 6E-05 39.2 12.8 137 10-149 356-512 (652)
207 KOG2047 mRNA splicing factor [ 93.1 4.2 9.1E-05 38.5 13.9 130 7-142 150-295 (835)
208 KOG3617 WD40 and TPR repeat-co 93.1 0.31 6.7E-06 47.1 6.8 136 7-153 812-992 (1416)
209 KOG0543 FKBP-type peptidyl-pro 93.0 1.4 3.1E-05 39.1 10.5 81 63-143 258-340 (397)
210 KOG3617 WD40 and TPR repeat-co 93.0 0.49 1.1E-05 45.8 8.0 162 5-178 836-1056(1416)
211 PF13181 TPR_8: Tetratricopept 92.9 0.21 4.6E-06 27.3 3.6 32 95-126 2-33 (34)
212 KOG1127 TPR repeat-containing 92.7 0.89 1.9E-05 44.9 9.4 135 10-149 507-651 (1238)
213 PF13176 TPR_7: Tetratricopept 92.4 0.3 6.5E-06 27.4 3.8 27 96-122 1-27 (36)
214 PF14938 SNAP: Soluble NSF att 92.3 0.64 1.4E-05 39.8 7.5 131 7-139 86-246 (282)
215 PF13281 DUF4071: Domain of un 92.3 3.2 7E-05 36.9 11.8 123 4-127 188-338 (374)
216 KOG0985 Vesicle coat protein c 92.2 3.6 7.8E-05 41.1 12.7 128 5-149 1058-1187(1666)
217 COG4700 Uncharacterized protei 92.1 5.2 0.00011 32.0 11.8 113 3-121 97-220 (251)
218 PRK04841 transcriptional regul 92.0 4.3 9.3E-05 40.7 14.0 144 5-149 583-752 (903)
219 KOG2041 WD40 repeat protein [G 92.0 1.7 3.6E-05 41.5 10.0 123 8-150 747-874 (1189)
220 PRK10866 outer membrane biogen 91.9 1 2.2E-05 37.7 8.1 73 67-139 37-115 (243)
221 COG3629 DnrI DNA-binding trans 91.7 1.6 3.4E-05 37.3 8.8 74 63-137 154-236 (280)
222 KOG2047 mRNA splicing factor [ 91.6 2.3 5E-05 40.2 10.4 147 5-153 112-273 (835)
223 PRK11906 transcriptional regul 91.5 3.5 7.5E-05 37.6 11.3 140 11-151 274-430 (458)
224 COG3629 DnrI DNA-binding trans 91.4 1.9 4E-05 36.8 9.0 57 95-151 154-210 (280)
225 PF09613 HrpB1_HrpK: Bacterial 91.4 3.4 7.4E-05 32.0 9.7 63 63-125 8-75 (160)
226 PF10300 DUF3808: Protein of u 91.3 3.6 7.8E-05 38.0 11.6 142 3-144 196-356 (468)
227 PF13525 YfiO: Outer membrane 91.3 6.8 0.00015 31.7 13.1 144 4-147 14-197 (203)
228 KOG3941 Intermediate in Toll s 91.2 0.85 1.8E-05 38.7 6.7 36 9-45 86-121 (406)
229 COG3947 Response regulator con 91.2 9 0.0002 32.9 12.7 134 11-147 149-332 (361)
230 PF13525 YfiO: Outer membrane 91.1 0.8 1.7E-05 37.1 6.5 74 68-141 11-90 (203)
231 PF14938 SNAP: Soluble NSF att 91.1 0.53 1.2E-05 40.3 5.7 119 34-153 38-180 (282)
232 COG4105 ComL DNA uptake lipopr 90.7 1.3 2.8E-05 37.0 7.2 119 62-200 35-159 (254)
233 COG3898 Uncharacterized membra 90.7 8.8 0.00019 34.3 12.5 144 2-149 195-350 (531)
234 PF13176 TPR_7: Tetratricopept 90.6 0.48 1E-05 26.6 3.4 24 64-87 1-24 (36)
235 PRK15331 chaperone protein Sic 90.5 1.3 2.9E-05 34.5 6.7 81 42-122 48-133 (165)
236 PF13428 TPR_14: Tetratricopep 90.3 0.71 1.5E-05 27.1 4.1 38 64-101 3-42 (44)
237 KOG3941 Intermediate in Toll s 89.8 2.2 4.7E-05 36.4 7.9 101 57-158 62-189 (406)
238 PF13431 TPR_17: Tetratricopep 89.8 0.63 1.4E-05 25.8 3.4 24 91-114 9-33 (34)
239 TIGR02561 HrpB1_HrpK type III 89.2 3 6.6E-05 31.9 7.6 79 63-145 8-93 (153)
240 PF04053 Coatomer_WDAD: Coatom 88.9 13 0.00028 34.2 12.9 98 7-119 273-372 (443)
241 COG1729 Uncharacterized protei 88.8 5.5 0.00012 33.6 9.6 94 33-127 144-248 (262)
242 PF13374 TPR_10: Tetratricopep 88.8 1.1 2.4E-05 25.4 4.2 28 94-121 2-29 (42)
243 KOG0543 FKBP-type peptidyl-pro 88.8 2.2 4.8E-05 37.9 7.6 81 70-150 216-313 (397)
244 smart00299 CLH Clathrin heavy 88.7 8.4 0.00018 28.8 10.5 82 34-120 10-95 (140)
245 KOG4555 TPR repeat-containing 88.5 3.5 7.6E-05 31.0 7.3 83 71-153 52-140 (175)
246 PF10602 RPN7: 26S proteasome 87.7 4.9 0.00011 31.8 8.5 19 5-23 46-64 (177)
247 KOG2053 Mitochondrial inherita 87.6 3.3 7.3E-05 40.5 8.5 99 5-107 53-157 (932)
248 PF13512 TPR_18: Tetratricopep 87.6 3.7 7.9E-05 31.2 7.2 86 42-127 21-132 (142)
249 PRK11906 transcriptional regul 87.0 10 0.00022 34.7 10.7 121 32-152 252-396 (458)
250 KOG2280 Vacuolar assembly/sort 86.9 4.2 9.2E-05 39.1 8.6 127 12-149 665-791 (829)
251 PF13174 TPR_6: Tetratricopept 86.9 1.3 2.9E-05 23.6 3.5 28 99-126 5-32 (33)
252 COG0457 NrfG FOG: TPR repeat [ 86.7 13 0.00028 28.8 14.5 43 104-146 177-220 (291)
253 smart00028 TPR Tetratricopepti 86.6 1.6 3.6E-05 22.1 3.8 30 96-125 3-32 (34)
254 PF06552 TOM20_plant: Plant sp 86.6 4.7 0.0001 31.9 7.5 50 90-140 64-125 (186)
255 PF10300 DUF3808: Protein of u 86.4 9.6 0.00021 35.3 10.8 111 8-121 246-374 (468)
256 COG0457 NrfG FOG: TPR repeat [ 86.2 14 0.0003 28.6 14.8 143 5-149 105-257 (291)
257 KOG0550 Molecular chaperone (D 86.1 11 0.00023 34.0 10.1 53 73-125 260-318 (486)
258 COG3118 Thioredoxin domain-con 85.8 17 0.00036 31.3 10.8 110 39-149 142-257 (304)
259 COG1729 Uncharacterized protei 84.1 7.3 0.00016 32.9 8.0 89 64-153 144-240 (262)
260 cd00923 Cyt_c_Oxidase_Va Cytoc 83.9 5 0.00011 28.3 5.8 47 56-102 36-84 (103)
261 KOG0550 Molecular chaperone (D 83.8 19 0.00041 32.5 10.6 133 7-143 215-372 (486)
262 KOG4555 TPR repeat-containing 83.7 2.5 5.3E-05 31.8 4.5 47 103-149 52-98 (175)
263 PF13374 TPR_10: Tetratricopep 83.6 2.1 4.6E-05 24.1 3.5 27 62-88 2-28 (42)
264 KOG2659 LisH motif-containing 83.6 22 0.00048 29.3 10.3 102 15-119 13-128 (228)
265 KOG4570 Uncharacterized conser 83.3 6 0.00013 34.3 7.2 78 8-88 77-161 (418)
266 PF09205 DUF1955: Domain of un 83.1 18 0.00039 27.4 10.6 112 6-121 13-147 (161)
267 PF09613 HrpB1_HrpK: Bacterial 82.8 20 0.00044 27.8 11.6 114 33-148 9-129 (160)
268 PF10602 RPN7: 26S proteasome 82.7 5.1 0.00011 31.7 6.4 60 63-122 37-101 (177)
269 COG4455 ImpE Protein of avirul 82.5 3.4 7.5E-05 33.8 5.2 72 65-136 4-80 (273)
270 PF02284 COX5A: Cytochrome c o 82.3 5.8 0.00013 28.3 5.7 47 56-102 39-87 (108)
271 KOG1538 Uncharacterized conser 82.2 5.9 0.00013 37.7 7.3 46 11-60 616-662 (1081)
272 PF00515 TPR_1: Tetratricopept 82.2 1.8 3.8E-05 23.5 2.6 31 63-93 2-33 (34)
273 PF13929 mRNA_stabil: mRNA sta 81.8 12 0.00027 32.0 8.5 59 91-149 199-259 (292)
274 KOG4648 Uncharacterized conser 81.2 2.8 6.1E-05 36.7 4.6 86 41-126 107-197 (536)
275 PF04184 ST7: ST7 protein; In 81.0 25 0.00055 32.5 10.7 14 10-23 215-228 (539)
276 PF14853 Fis1_TPR_C: Fis1 C-te 79.9 7 0.00015 24.2 4.9 28 100-127 7-34 (53)
277 smart00386 HAT HAT (Half-A-TPR 79.7 5.1 0.00011 20.9 4.0 29 108-136 1-29 (33)
278 COG4785 NlpI Lipoprotein NlpI, 79.3 13 0.00028 30.7 7.4 70 56-126 92-165 (297)
279 PF11846 DUF3366: Domain of un 79.0 10 0.00022 30.3 7.0 59 67-125 113-175 (193)
280 PF13281 DUF4071: Domain of un 79.0 16 0.00035 32.6 8.7 74 67-140 146-229 (374)
281 KOG4570 Uncharacterized conser 78.7 4 8.7E-05 35.3 4.7 44 78-121 116-162 (418)
282 PF02284 COX5A: Cytochrome c o 78.7 5 0.00011 28.6 4.4 46 90-136 41-87 (108)
283 KOG2796 Uncharacterized conser 78.6 40 0.00086 28.8 10.3 116 36-153 182-311 (366)
284 cd00923 Cyt_c_Oxidase_Va Cytoc 78.3 9.2 0.0002 27.0 5.6 32 90-121 38-69 (103)
285 KOG2280 Vacuolar assembly/sort 77.9 4.8 0.0001 38.7 5.4 113 56-177 678-790 (829)
286 PF07079 DUF1347: Protein of u 77.5 44 0.00096 30.7 10.9 136 6-145 17-184 (549)
287 TIGR01503 MthylAspMut_E methyl 77.4 22 0.00049 32.5 9.2 184 77-274 69-294 (480)
288 PF07719 TPR_2: Tetratricopept 77.2 3.2 6.9E-05 22.2 2.6 29 64-92 3-32 (34)
289 KOG4648 Uncharacterized conser 76.9 9 0.0002 33.7 6.3 44 5-51 107-151 (536)
290 COG2976 Uncharacterized protei 76.8 33 0.00072 27.7 9.0 87 38-125 96-190 (207)
291 KOG2610 Uncharacterized conser 76.7 41 0.0009 29.7 10.2 110 7-118 115-233 (491)
292 PF00637 Clathrin: Region in C 76.2 0.9 1.9E-05 34.3 0.2 78 37-118 13-94 (143)
293 KOG1585 Protein required for f 75.9 36 0.00079 28.6 9.3 55 97-152 193-251 (308)
294 PF11207 DUF2989: Protein of u 75.7 23 0.0005 28.7 8.0 73 41-114 117-198 (203)
295 PF07721 TPR_4: Tetratricopept 75.4 5.3 0.00011 20.4 3.0 18 68-85 7-24 (26)
296 KOG2610 Uncharacterized conser 74.9 60 0.0013 28.7 10.8 107 44-150 116-231 (491)
297 PF10366 Vps39_1: Vacuolar sor 74.5 24 0.00052 25.4 7.2 40 77-122 28-67 (108)
298 PF04184 ST7: ST7 protein; In 73.7 78 0.0017 29.5 12.3 69 67-135 264-338 (539)
299 PF11207 DUF2989: Protein of u 72.6 33 0.00072 27.8 8.2 74 73-148 118-198 (203)
300 KOG1538 Uncharacterized conser 72.2 23 0.00049 34.0 8.1 83 33-121 749-844 (1081)
301 PF10366 Vps39_1: Vacuolar sor 72.0 14 0.0003 26.7 5.5 27 63-89 40-66 (108)
302 COG4455 ImpE Protein of avirul 71.9 20 0.00044 29.5 6.8 51 2-55 8-59 (273)
303 PF13170 DUF4003: Protein of u 71.1 69 0.0015 27.7 13.0 137 31-199 60-220 (297)
304 PF09205 DUF1955: Domain of un 67.9 51 0.0011 25.0 8.7 76 7-88 68-146 (161)
305 PF04053 Coatomer_WDAD: Coatom 67.7 2.2 4.8E-05 39.1 0.7 72 41-120 328-399 (443)
306 PF07079 DUF1347: Protein of u 67.3 31 0.00066 31.7 7.6 101 2-107 53-180 (549)
307 PF08631 SPO22: Meiosis protei 66.7 80 0.0017 26.8 15.1 133 6-138 4-165 (278)
308 TIGR02561 HrpB1_HrpK type III 66.0 14 0.00031 28.3 4.6 55 105-159 21-75 (153)
309 COG4105 ComL DNA uptake lipopr 65.9 81 0.0018 26.6 15.5 143 6-149 45-225 (254)
310 KOG4234 TPR repeat-containing 65.7 33 0.00072 28.0 6.8 82 70-151 103-191 (271)
311 PF13934 ELYS: Nuclear pore co 64.2 81 0.0018 26.0 10.5 107 25-139 73-183 (226)
312 COG3118 Thioredoxin domain-con 63.5 98 0.0021 26.7 13.5 140 4-146 143-290 (304)
313 PF14689 SPOB_a: Sensor_kinase 63.4 9.2 0.0002 24.4 2.8 44 78-121 6-50 (62)
314 PF11848 DUF3368: Domain of un 62.9 20 0.00043 21.6 4.0 36 4-40 11-46 (48)
315 PF13929 mRNA_stabil: mRNA sta 62.2 55 0.0012 28.1 7.9 113 7-119 140-263 (292)
316 KOG1920 IkappaB kinase complex 61.7 45 0.00097 34.2 8.2 116 28-155 932-1053(1265)
317 PRK10941 hypothetical protein; 61.3 48 0.001 28.2 7.5 55 95-149 182-236 (269)
318 PF11846 DUF3366: Domain of un 60.4 34 0.00073 27.3 6.3 50 43-92 120-175 (193)
319 PF13170 DUF4003: Protein of u 60.1 1.1E+02 0.0025 26.4 9.9 119 47-197 38-179 (297)
320 PRK10941 hypothetical protein; 57.3 49 0.0011 28.2 6.9 67 64-130 183-251 (269)
321 KOG2041 WD40 repeat protein [G 54.2 1.9E+02 0.0041 28.4 10.6 94 56-155 846-950 (1189)
322 PF14853 Fis1_TPR_C: Fis1 C-te 53.2 33 0.00071 21.2 3.9 35 3-40 9-43 (53)
323 COG5108 RPO41 Mitochondrial DN 52.8 58 0.0013 31.5 7.0 69 36-104 33-113 (1117)
324 COG3947 Response regulator con 52.3 44 0.00095 28.9 5.7 107 11-121 227-340 (361)
325 KOG1586 Protein required for f 51.8 78 0.0017 26.5 6.8 24 97-120 96-119 (288)
326 PF11663 Toxin_YhaV: Toxin wit 51.4 74 0.0016 24.0 6.1 27 166-196 104-130 (140)
327 TIGR03504 FimV_Cterm FimV C-te 51.0 21 0.00046 21.1 2.7 23 3-26 7-29 (44)
328 KOG2908 26S proteasome regulat 50.9 1.1E+02 0.0023 27.1 7.9 83 67-149 80-178 (380)
329 PF14689 SPOB_a: Sensor_kinase 50.6 14 0.00029 23.7 2.0 23 1-23 29-51 (62)
330 PF06368 Met_asp_mut_E: Methyl 49.9 89 0.0019 28.5 7.5 73 166-246 139-218 (441)
331 KOG1585 Protein required for f 49.9 1.6E+02 0.0035 24.9 9.8 83 35-118 154-251 (308)
332 COG4785 NlpI Lipoprotein NlpI, 49.2 52 0.0011 27.3 5.4 58 90-149 94-154 (297)
333 KOG1920 IkappaB kinase complex 49.0 77 0.0017 32.7 7.5 98 42-149 919-1020(1265)
334 KOG1941 Acetylcholine receptor 48.9 43 0.00093 29.9 5.2 113 37-149 128-267 (518)
335 PRK15180 Vi polysaccharide bio 48.8 56 0.0012 30.3 6.1 114 8-126 302-423 (831)
336 KOG2396 HAT (Half-A-TPR) repea 48.5 1.9E+02 0.0041 27.1 9.3 82 56-137 99-183 (568)
337 KOG0276 Vesicle coat complex C 48.2 30 0.00066 32.8 4.4 126 33-177 616-741 (794)
338 KOG4507 Uncharacterized conser 47.6 1.2E+02 0.0025 29.1 8.0 96 44-139 620-721 (886)
339 PF07163 Pex26: Pex26 protein; 46.9 1.1E+02 0.0025 26.2 7.2 79 37-117 89-181 (309)
340 KOG4077 Cytochrome c oxidase, 46.5 94 0.002 23.3 5.9 48 56-103 78-127 (149)
341 PF11817 Foie-gras_1: Foie gra 46.2 75 0.0016 26.5 6.3 70 79-149 162-239 (247)
342 KOG0403 Neoplastic transformat 46.0 1.2E+02 0.0026 28.0 7.6 75 65-142 512-588 (645)
343 COG2178 Predicted RNA-binding 45.5 1.4E+02 0.003 24.2 7.2 17 105-121 132-148 (204)
344 PF02184 HAT: HAT (Half-A-TPR) 45.3 29 0.00063 19.0 2.4 24 10-36 2-25 (32)
345 KOG0687 26S proteasome regulat 45.1 1.7E+02 0.0037 25.8 8.2 110 5-117 114-244 (393)
346 KOG2066 Vacuolar assembly/sort 44.4 3.3E+02 0.0072 27.0 11.3 141 2-149 363-526 (846)
347 KOG2396 HAT (Half-A-TPR) repea 44.0 1.1E+02 0.0024 28.6 7.2 60 90-149 101-161 (568)
348 PF07163 Pex26: Pex26 protein; 42.9 1.4E+02 0.0029 25.8 7.1 81 68-151 89-181 (309)
349 PRK11619 lytic murein transgly 42.1 3.4E+02 0.0073 26.5 13.9 139 5-148 43-183 (644)
350 PF04910 Tcf25: Transcriptiona 41.7 2.2E+02 0.0047 25.4 8.8 43 100-142 109-152 (360)
351 PF13934 ELYS: Nuclear pore co 41.6 2E+02 0.0043 23.7 10.9 126 14-149 29-161 (226)
352 cd00280 TRFH Telomeric Repeat 41.5 1.6E+02 0.0034 23.7 6.9 39 69-107 118-156 (200)
353 PRK10564 maltose regulon perip 40.9 99 0.0021 26.8 6.2 36 90-125 252-288 (303)
354 COG4976 Predicted methyltransf 40.8 61 0.0013 27.0 4.7 56 72-127 5-62 (287)
355 KOG4334 Uncharacterized conser 40.6 50 0.0011 30.4 4.5 114 26-141 410-573 (650)
356 KOG1130 Predicted G-alpha GTPa 39.3 25 0.00054 31.8 2.4 51 4-55 26-79 (639)
357 COG5108 RPO41 Mitochondrial DN 39.2 1.8E+02 0.004 28.3 8.0 68 67-136 33-111 (1117)
358 KOG2114 Vacuolar assembly/sort 38.7 2.3E+02 0.005 28.3 8.8 116 33-153 336-456 (933)
359 PF08631 SPO22: Meiosis protei 38.3 2.5E+02 0.0054 23.8 10.3 112 42-153 4-146 (278)
360 KOG4642 Chaperone-dependent E3 38.2 82 0.0018 26.5 5.1 111 41-151 20-140 (284)
361 PF07035 Mic1: Colon cancer-as 37.1 2E+02 0.0044 22.5 10.6 90 55-151 22-112 (167)
362 KOG0276 Vesicle coat complex C 36.5 2.3E+02 0.005 27.3 8.1 101 41-154 647-747 (794)
363 PF10255 Paf67: RNA polymerase 35.8 2.7E+02 0.0059 25.3 8.5 92 30-121 74-191 (404)
364 KOG4077 Cytochrome c oxidase, 35.6 1.1E+02 0.0025 22.9 5.0 46 90-136 80-126 (149)
365 PF07720 TPR_3: Tetratricopept 35.5 83 0.0018 17.5 4.0 29 97-125 4-34 (36)
366 KOG2300 Uncharacterized conser 35.1 3.9E+02 0.0084 25.1 11.1 143 6-149 334-506 (629)
367 PF08311 Mad3_BUB1_I: Mad3/BUB 34.2 1.9E+02 0.0041 21.3 7.0 40 112-151 81-122 (126)
368 PF11768 DUF3312: Protein of u 33.9 3E+02 0.0064 26.1 8.5 67 56-122 401-472 (545)
369 KOG1130 Predicted G-alpha GTPa 33.8 53 0.0012 29.8 3.6 117 33-149 197-336 (639)
370 PF04090 RNA_pol_I_TF: RNA pol 33.6 2.6E+02 0.0056 22.7 8.3 27 97-123 142-168 (199)
371 cd07229 Pat_TGL3_like Triacylg 32.4 2.1E+02 0.0044 26.0 7.1 39 16-55 100-141 (391)
372 COG5159 RPN6 26S proteasome re 32.1 3.4E+02 0.0074 23.6 9.9 146 3-149 11-186 (421)
373 PHA02875 ankyrin repeat protei 31.9 1.1E+02 0.0024 27.4 5.6 80 4-88 8-91 (413)
374 PRK15180 Vi polysaccharide bio 31.8 2.2E+02 0.0048 26.6 7.1 48 74-121 335-384 (831)
375 PF12968 DUF3856: Domain of Un 31.3 1.9E+02 0.0041 21.6 5.4 57 93-149 54-121 (144)
376 PF04097 Nic96: Nup93/Nic96; 30.5 1.7E+02 0.0037 28.3 6.7 23 104-127 515-537 (613)
377 KOG2114 Vacuolar assembly/sort 30.4 5.7E+02 0.012 25.8 9.9 38 107-146 503-556 (933)
378 PF11817 Foie-gras_1: Foie gra 30.2 2.2E+02 0.0048 23.7 6.7 15 135-149 185-199 (247)
379 PF10579 Rapsyn_N: Rapsyn N-te 30.1 1.3E+02 0.0028 20.4 4.1 23 63-85 44-66 (80)
380 PF11768 DUF3312: Protein of u 30.0 2.3E+02 0.005 26.8 7.1 22 2-23 415-436 (545)
381 PF06552 TOM20_plant: Plant sp 30.0 2.2E+02 0.0049 22.7 6.1 94 95-212 29-129 (186)
382 cd00280 TRFH Telomeric Repeat 29.7 1.7E+02 0.0036 23.6 5.3 62 78-141 85-156 (200)
383 PF13762 MNE1: Mitochondrial s 29.7 2.6E+02 0.0056 21.4 8.8 84 57-141 32-128 (145)
384 KOG2908 26S proteasome regulat 29.4 3.1E+02 0.0068 24.3 7.4 77 37-113 81-176 (380)
385 KOG4814 Uncharacterized conser 29.1 2E+02 0.0044 27.8 6.6 77 73-149 365-449 (872)
386 KOG0376 Serine-threonine phosp 28.0 49 0.0011 30.4 2.5 106 101-208 11-117 (476)
387 cd07153 Fur_like Ferric uptake 28.0 1E+02 0.0022 22.0 3.9 46 2-48 7-52 (116)
388 PF12796 Ank_2: Ankyrin repeat 27.3 78 0.0017 21.0 3.0 19 43-61 35-53 (89)
389 PRK10564 maltose regulon perip 26.9 76 0.0017 27.4 3.3 34 56-89 250-284 (303)
390 PF07443 HARP: HepA-related pr 26.0 50 0.0011 20.6 1.5 27 182-208 13-39 (55)
391 PF12862 Apc5: Anaphase-promot 25.7 2.3E+02 0.0049 19.4 7.4 50 73-122 9-69 (94)
392 PRK02287 hypothetical protein; 25.6 3.4E+02 0.0073 21.4 7.2 59 62-120 107-166 (171)
393 smart00544 MA3 Domain in DAP-5 25.4 2.5E+02 0.0054 19.8 9.0 58 65-123 5-66 (113)
394 PF13637 Ank_4: Ankyrin repeat 25.2 1.5E+02 0.0032 17.6 3.7 23 39-61 6-28 (54)
395 KOG0818 GTPase-activating prot 25.0 1E+02 0.0022 28.6 3.9 85 2-88 137-223 (669)
396 PF14669 Asp_Glu_race_2: Putat 24.9 1.4E+02 0.003 24.3 4.1 26 62-87 181-206 (233)
397 KOG2297 Predicted translation 24.7 4.9E+02 0.011 22.9 10.3 20 129-148 322-341 (412)
398 PF02847 MA3: MA3 domain; Int 24.2 2.6E+02 0.0057 19.6 6.9 24 66-89 6-29 (113)
399 KOG4507 Uncharacterized conser 23.7 3.5E+02 0.0075 26.1 7.0 95 8-105 620-721 (886)
400 KOG4567 GTPase-activating prot 23.6 5.1E+02 0.011 22.8 9.3 40 15-55 263-302 (370)
401 PF11663 Toxin_YhaV: Toxin wit 23.5 32 0.00068 25.9 0.4 25 238-262 104-128 (140)
402 smart00804 TAP_C C-terminal do 23.5 42 0.00091 21.6 0.9 22 244-265 40-61 (63)
403 cd04449 DEP_DEPDC5-like DEP (D 23.5 80 0.0017 21.4 2.4 33 243-276 47-79 (83)
404 PF13762 MNE1: Mitochondrial s 23.4 1.5E+02 0.0032 22.7 4.0 47 29-75 77-128 (145)
405 COG2231 Uncharacterized protei 22.5 1.8E+02 0.0039 23.7 4.4 51 56-107 139-193 (215)
406 COG4003 Uncharacterized protei 22.4 32 0.00068 23.4 0.2 30 234-263 36-65 (98)
407 PF08967 DUF1884: Domain of un 22.3 70 0.0015 21.7 1.8 27 173-199 7-33 (85)
408 PF14840 DNA_pol3_delt_C: Proc 21.9 71 0.0015 23.7 2.0 29 7-36 9-37 (125)
409 PF13646 HEAT_2: HEAT repeats; 21.4 2.5E+02 0.0054 18.4 8.0 61 60-122 12-72 (88)
410 cd08318 Death_NMPP84 Death dom 21.3 1.3E+02 0.0027 20.6 3.0 22 63-84 64-85 (86)
411 cd08780 Death_TRADD Death Doma 21.2 2.1E+02 0.0045 19.9 3.9 53 34-86 35-89 (90)
412 PF12583 TPPII_N: Tripeptidyl 20.9 2.5E+02 0.0054 21.1 4.5 33 107-139 89-121 (139)
413 PF02607 B12-binding_2: B12 bi 20.9 1.2E+02 0.0027 19.8 2.9 40 5-45 11-50 (79)
414 cd08819 CARD_MDA5_2 Caspase ac 20.6 3E+02 0.0065 19.1 6.8 37 43-81 48-85 (88)
415 PF14044 NETI: NETI protein 20.6 77 0.0017 19.9 1.6 18 180-197 10-27 (57)
416 PRK02287 hypothetical protein; 20.1 4.4E+02 0.0096 20.8 6.2 79 8-87 69-165 (171)
417 COG2976 Uncharacterized protei 20.0 4.8E+02 0.011 21.2 7.9 83 3-89 97-186 (207)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2e-54 Score=413.11 Aligned_cols=281 Identities=33% Similarity=0.605 Sum_probs=272.5
Q ss_pred ChhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-----ccCCCChhHHHHHHHHHHcc
Q 043686 1 MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-----RIRSPKVTHHALMVSVLARA 75 (282)
Q Consensus 1 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-----~g~~p~~~~~~~li~~~~~~ 75 (282)
||.+|+++|+.++|+++|++|.+ .|+.||.+||+++|++|++.|++++|.++|+ .|+.|+..+|++||++|+++
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~-~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~ 475 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIA-EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence 68999999999999999999999 9999999999999999999999999999998 69999999999999999999
Q ss_pred CChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc------
Q 043686 76 GLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ------ 149 (282)
Q Consensus 76 g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~------ 149 (282)
|++++|.++|++|++.||..+|++||.+|+++|+++.|.++++++.++.|++..+|+.|+++|++.|++++|.+
T Consensus 476 G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 476 GLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999998
Q ss_pred --------ccceeeecCeEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhhhhhh-hhHHHHH
Q 043686 150 --------AYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIG-HSEILAL 220 (282)
Q Consensus 150 --------~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~~~-~~~~l~~ 220 (282)
.++|++..+.++.|+.+...|++.++.++.++++..+|++.|+.||+....+.++...|+..+. |+|++++
T Consensus 556 ~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~ 635 (697)
T PLN03081 556 RKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAI 635 (697)
T ss_pred HcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHH
Confidence 5567777788899999999999999999999999999999999999999999999999998888 9999999
Q ss_pred HhhhccCCCCCeEEEeeccccccchHHHHHHHHHhhcceEEeecCCccccccCCccCCCCCC
Q 043686 221 SFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDFW 282 (282)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (282)
+||++.++++.+++|+|+++.|||||+|.|+++++..|+|++||..|||||++|-|||||||
T Consensus 636 a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 636 AFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred HhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.9e-50 Score=391.55 Aligned_cols=278 Identities=40% Similarity=0.630 Sum_probs=267.6
Q ss_pred ChhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-----ccCCCChhHHHHHHHHHHcc
Q 043686 1 MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-----RIRSPKVTHHALMVSVLARA 75 (282)
Q Consensus 1 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-----~g~~p~~~~~~~li~~~~~~ 75 (282)
||.+|+++|+.++|+++|++|.+ .|+.||.+||+++|.+|++.|++++|.++|+ .|+.|+..+|++||++|+++
T Consensus 560 lI~~~~~~G~~~~A~~lf~~M~~-~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~ 638 (857)
T PLN03077 560 LLTGYVAHGKGSMAVELFNRMVE-SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Confidence 58999999999999999999999 9999999999999999999999999999999 79999999999999999999
Q ss_pred CChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc------
Q 043686 76 GLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ------ 149 (282)
Q Consensus 76 g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~------ 149 (282)
|++++|++++++|++.||..+|++|+.+|..+|+.+.|+.+.+++.+++|+++.+|..|.+.|+..|++++|.+
T Consensus 639 G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 639 GKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --------ccceeeecCeEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhhhhhh-hhHHHHH
Q 043686 150 --------AYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIG-HSEILAL 220 (282)
Q Consensus 150 --------~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~~~-~~~~l~~ 220 (282)
.++|++.++.+|.|+.+...|.+.++.+..++.+..+|++.|+.||+.... ..+...|+..+. |+|+|++
T Consensus 719 ~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~ 797 (857)
T PLN03077 719 ENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAI 797 (857)
T ss_pred HcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHH
Confidence 678999999999999999999999999999999999999999999987655 446677888888 9999999
Q ss_pred HhhhccCCCCCeEEEeeccccccchHHHHHHHHHhhcceEEeecCCccccccCCccCCCC
Q 043686 221 SFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRD 280 (282)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (282)
+||++.++++++++|+|+++.|+|||+|.|+++++..|+|++||..+||||++|.|||||
T Consensus 798 a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 798 AFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999999999997
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.3e-44 Score=347.00 Aligned_cols=273 Identities=13% Similarity=0.122 Sum_probs=240.6
Q ss_pred ChhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh----ccCCCChhHHHHHHHHHHccC
Q 043686 1 MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN----RIRSPKVTHHALMVSVLARAG 76 (282)
Q Consensus 1 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~----~g~~p~~~~~~~li~~~~~~g 76 (282)
||.+|++.|++++|+++|++|.+ .|+.||..+|++||++|++.|++++|.++|+ .|+.||.+||++||++|++.|
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~-~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQE-AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 57899999999999999999999 9999999999999999999999999999999 899999999999999999999
Q ss_pred ChHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh----cCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 77 LFDEARIFIQEYH---MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCE----LKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 77 ~~~~A~~l~~~m~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
++++|.++|++|. +.||.++||+||.+|++.|++++|.++|++|.+ +.| +..+|++||++|++.|++++|.+
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999996 789999999999999999999999999999973 577 55999999999999999999999
Q ss_pred ccceeeecCeE------EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhhhhhhhhHH---HHH
Q 043686 150 AYSWIEFRNKV------HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGHSEI---LAL 220 (282)
Q Consensus 150 ~~~~~~~~~~~------~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~~~~~~~---l~~ 220 (282)
+|..|...+.. +.+|.+|++.|+.++|. ++|++|.+.|+.||..||..+++++++.+.+..+.. .+.
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl----~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL----SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHH----HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99988877642 78999999999999998 999999999999999999999999999888763222 233
Q ss_pred HhhhccCCCCCeEEEeeccccccchHHHHHHHHHhhcceEEeecCCccccccCCccCCCCC
Q 043686 221 SFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDF 281 (282)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (282)
..|+.++...++ .++++|+++|++++|.++|++|.+.++. ||...|+.+++|+|+.|++
T Consensus 677 k~G~~pd~~tyn-sLI~ay~k~G~~eeA~~lf~eM~~~g~~-PdvvtyN~LI~gy~k~G~~ 735 (1060)
T PLN03218 677 KQGIKLGTVSYS-SLMGACSNAKNWKKALELYEDIKSIKLR-PTVSTMNALITALCEGNQL 735 (1060)
T ss_pred HcCCCCCHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCCCH
Confidence 445554444555 4899999999999999999999888754 6889999999999998864
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.4e-43 Score=334.01 Aligned_cols=269 Identities=12% Similarity=0.121 Sum_probs=226.7
Q ss_pred ChhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh----ccCCCChhHHHHHHHHHHccC
Q 043686 1 MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN----RIRSPKVTHHALMVSVLARAG 76 (282)
Q Consensus 1 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~----~g~~p~~~~~~~li~~~~~~g 76 (282)
||.+|++.|++++|+++|++|.+ .|+.||..||++++.+|++.|..+.+.+++. .|+.||..+||+||++|+++|
T Consensus 195 li~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 195 IIGGLVDAGNYREAFALFREMWE-DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHH-hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 58899999999999999999999 9999999999888888888888888888877 788888888888888888888
Q ss_pred ChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH--hcCCC----------------------------
Q 043686 77 LFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLC--ELKPL---------------------------- 126 (282)
Q Consensus 77 ~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~p~---------------------------- 126 (282)
++++|.++|++|+ .||+++||+||++|++.|++++|.++|++|. ++.|+
T Consensus 274 ~~~~A~~vf~~m~-~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~ 352 (697)
T PLN03081 274 DIEDARCVFDGMP-EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352 (697)
T ss_pred CHHHHHHHHHhCC-CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 8888888888887 7888888888888888888888888888886 34442
Q ss_pred ------ChhHHHHHHHHHHHcCchhhhhcccceeeecCeE--EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCc
Q 043686 127 ------SAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKV--HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDF 198 (282)
Q Consensus 127 ------~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~--~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t 198 (282)
+..+|++||++|+++|++++|.++|+.|...+.+ |+||.+|+++|+.++|. ++|++|.+.|+.||..|
T Consensus 353 ~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~----~lf~~M~~~g~~Pd~~T 428 (697)
T PLN03081 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAV----EMFERMIAEGVAPNHVT 428 (697)
T ss_pred HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHH----HHHHHHHHhCCCCCHHH
Confidence 3456678888999999999999999999888877 89999999999999998 99999999999999999
Q ss_pred ccccchhhhhhhhhhh----hHHHHHHhhhccCCCCCeEEEeeccccccchHHHHHHHHHhhcceEEeecCCccccccCC
Q 043686 199 SLHYVDEERKWTQIGH----SEILALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYG 274 (282)
Q Consensus 199 ~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ 274 (282)
|..++.+|.+.+.+.. ...+...+|+.++..+++ .+++.|+++|++++|.++|++|+. .|+...|+.++.+
T Consensus 429 ~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~-~li~~l~r~G~~~eA~~~~~~~~~----~p~~~~~~~Ll~a 503 (697)
T PLN03081 429 FLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA-CMIELLGREGLLDEAYAMIRRAPF----KPTVNMWAALLTA 503 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH-hHHHHHHhcCCHHHHHHHHHHCCC----CCCHHHHHHHHHH
Confidence 9999999999998862 222334467777766777 599999999999999999998853 3566777777777
Q ss_pred ccCCCC
Q 043686 275 FCSCRD 280 (282)
Q Consensus 275 ~~~~~~ 280 (282)
++..|+
T Consensus 504 ~~~~g~ 509 (697)
T PLN03081 504 CRIHKN 509 (697)
T ss_pred HHHcCC
Confidence 766654
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.2e-42 Score=337.20 Aligned_cols=268 Identities=16% Similarity=0.171 Sum_probs=239.9
Q ss_pred ChhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh----ccCCCChhHHHHHHHHHHccC
Q 043686 1 MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN----RIRSPKVTHHALMVSVLARAG 76 (282)
Q Consensus 1 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~----~g~~p~~~~~~~li~~~~~~g 76 (282)
||.+|++.|++++|+++|++|.. .|+.||..||+++|++|++.++++.+.+++. .|+.||..+||+||++|+++|
T Consensus 158 li~~~~~~g~~~~A~~~f~~M~~-~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g 236 (857)
T PLN03077 158 LVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG 236 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC
Confidence 58999999999999999999999 9999999999999999999999999999998 899999999999999999999
Q ss_pred ChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH--hcCCC----------------------------
Q 043686 77 LFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLC--ELKPL---------------------------- 126 (282)
Q Consensus 77 ~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~p~---------------------------- 126 (282)
++++|.++|++|+ .||+++||+||++|++.|++++|.++|++|. ++.|+
T Consensus 237 ~~~~A~~lf~~m~-~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~ 315 (857)
T PLN03077 237 DVVSARLVFDRMP-RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV 315 (857)
T ss_pred CHHHHHHHHhcCC-CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 9999999999999 8999999999999999999999999999997 34554
Q ss_pred ------ChhHHHHHHHHHHHcCchhhhhcccceeeecCeE--EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCc
Q 043686 127 ------SAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKV--HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDF 198 (282)
Q Consensus 127 ------~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~--~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t 198 (282)
++.+||+|+++|+++|++++|.++|+.|+..+.+ ++++.+|++.|+.++|. ++|++|++.|+.||..|
T Consensus 316 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~----~lf~~M~~~g~~Pd~~t 391 (857)
T PLN03077 316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKAL----ETYALMEQDNVSPDEIT 391 (857)
T ss_pred HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHH----HHHHHHHHhCCCCCcee
Confidence 5678888999999999999999999999988777 89999999999999998 99999999999999999
Q ss_pred ccccchhhhhhhhhhhhH---HHHHHhhhccCCCCCeEEEeeccccccchHHHHHHHHHhhcceEEeecCCccccccCCc
Q 043686 199 SLHYVDEERKWTQIGHSE---ILALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGF 275 (282)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~ 275 (282)
|..++.++++.+.+.... ..+...|+.+....++ .++++|++||++++|.++|++|.+++++ .|+.++.|+
T Consensus 392 ~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n-~Li~~y~k~g~~~~A~~vf~~m~~~d~v-----s~~~mi~~~ 465 (857)
T PLN03077 392 IASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN-ALIEMYSKCKCIDKALEVFHNIPEKDVI-----SWTSIIAGL 465 (857)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHH-HHHHHHHHcCCHHHHHHHHHhCCCCCee-----eHHHHHHHH
Confidence 999999999988886222 2345566665555555 4899999999999999999999887554 678888888
Q ss_pred cCCCC
Q 043686 276 CSCRD 280 (282)
Q Consensus 276 ~~~~~ 280 (282)
|+.|+
T Consensus 466 ~~~g~ 470 (857)
T PLN03077 466 RLNNR 470 (857)
T ss_pred HHCCC
Confidence 88775
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.8e-43 Score=338.70 Aligned_cols=273 Identities=15% Similarity=0.187 Sum_probs=246.3
Q ss_pred ChhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh----ccCCCChhHHHHHHHHHHccC
Q 043686 1 MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN----RIRSPKVTHHALMVSVLARAG 76 (282)
Q Consensus 1 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~----~g~~p~~~~~~~li~~~~~~g 76 (282)
||.+|++.|++++|.++|++|.+ .|+.||..||++||.+|++.|++++|.++|+ .|+.||.+||++||.+|++.|
T Consensus 478 LI~~y~k~G~vd~A~~vf~eM~~-~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 478 LISTCAKSGKVDAMFEVFHEMVN-AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG 556 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 58999999999999999999999 9999999999999999999999999999998 899999999999999999999
Q ss_pred ChHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh--cCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 77 LFDEARIFIQEYH-----MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCE--LKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 77 ~~~~A~~l~~~m~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
++++|.++|++|. +.||.++||+||.+|++.|++++|.++|++|.+ +.| ++.+|++||++|++.|++++|.+
T Consensus 557 ~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p-~~~tynsLI~ay~k~G~~deAl~ 635 (1060)
T PLN03218 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG-TPEVYTIAVNSCSQKGDWDFALS 635 (1060)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHH
Confidence 9999999999994 689999999999999999999999999999995 455 66999999999999999999999
Q ss_pred ccceeeecCeE------EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhhhhhhhhHHH---HH
Q 043686 150 AYSWIEFRNKV------HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGHSEIL---AL 220 (282)
Q Consensus 150 ~~~~~~~~~~~------~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~~~~~~~l---~~ 220 (282)
+|..|...+.. ++++.+|++.|+.++|. .+|++|.+.|+.||..+|..++.++++.+.+..+..+ +.
T Consensus 636 lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~----~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF----EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH----HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99998876543 78999999999999998 9999999999999999999999999999988733332 23
Q ss_pred HhhhccCCCCCeEEEeeccccccchHHHHHHHHHhhcceEEeecCCccccccCCccCCCCC
Q 043686 221 SFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDF 281 (282)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (282)
..|+.++...++ .++++|+++|++++|.++|++|...|+. ||..+|+.++.++|+.|++
T Consensus 712 ~~g~~PdvvtyN-~LI~gy~k~G~~eeAlelf~eM~~~Gi~-Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 712 SIKLRPTVSTMN-ALITALCEGNQLPKALEVLSEMKRLGLC-PNTITYSILLVASERKDDA 770 (1060)
T ss_pred HcCCCCCHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCCCH
Confidence 345555555555 4899999999999999999999998865 7999999999999998864
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.61 E-value=3.1e-15 Score=133.83 Aligned_cols=255 Identities=8% Similarity=0.069 Sum_probs=152.1
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCC---HHHHHHHHHHHhcCCCHHHHHHHhh--ccCC-CChhHHHHHHHHHHccC
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEID---PLTFAAVLHACSTAGMVEEGWLCFN--RIRS-PKVTHHALMVSVLARAG 76 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~---~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~-p~~~~~~~li~~~~~~g 76 (282)
..|.+.|++++|..+++.+.. .+-.++ ..++..+...+.+.|++++|..+|+ .... ++..+++.++..|.+.|
T Consensus 77 ~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 155 (389)
T PRK11788 77 NLFRRRGEVDRAIRIHQNLLS-RPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEK 155 (389)
T ss_pred HHHHHcCcHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhc
Confidence 345667777777777777665 432222 2345666667777777777777777 2222 34566777777777777
Q ss_pred ChHHHHHHHHhcC-CCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 77 LFDEARIFIQEYH-MERY------PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 77 ~~~~A~~l~~~m~-~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
++++|.+.|+.+. ..|+ ...|..+...+.+.|++++|.+.|+++.+..|++...+..+...|.+.|++++|.+
T Consensus 156 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 235 (389)
T PRK11788 156 DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIE 235 (389)
T ss_pred hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 7777777777764 2222 12345566667777777777777777777777666677777788888888888877
Q ss_pred ccceeeecCe------EEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhhhhhhhhH-HHHHHh
Q 043686 150 AYSWIEFRNK------VHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGHSE-ILALSF 222 (282)
Q Consensus 150 ~~~~~~~~~~------~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~~~~~~-~l~~~~ 222 (282)
.+..+...+. .+.+...+...|+.++|. ..++++.+. .|+...+..+...+.+.+....+. .+....
T Consensus 236 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~----~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l 309 (389)
T PRK11788 236 ALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL----EFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQL 309 (389)
T ss_pred HHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH----HHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6555442211 134455667778888877 666666554 466544444455555555544222 222222
Q ss_pred hhccCCCCCeEEEeecccc---ccchHHHHHHHHHhhcceEEeecCC
Q 043686 223 GLISTQVGATIHVTKNLRM---RHICHDFAKAISKMVEGEIIIKDPS 266 (282)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~ 266 (282)
...++..... .++..+.. .|+..+|..+|++|.++++. +|+.
T Consensus 310 ~~~P~~~~~~-~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~-~~p~ 354 (389)
T PRK11788 310 RRHPSLRGFH-RLLDYHLAEAEEGRAKESLLLLRDLVGEQLK-RKPR 354 (389)
T ss_pred HhCcCHHHHH-HHHHHhhhccCCccchhHHHHHHHHHHHHHh-CCCC
Confidence 2222221111 12333332 45788888888888877654 4554
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.52 E-value=5.7e-14 Score=125.67 Aligned_cols=259 Identities=14% Similarity=0.077 Sum_probs=184.5
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccC--CC---ChhHHHHHHHHHHccC
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIR--SP---KVTHHALMVSVLARAG 76 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~--~p---~~~~~~~li~~~~~~g 76 (282)
+...|++++|++.|.++.+ . .|+ ..++..+...+...|++++|..+++ ... .+ ....+..+...|.+.|
T Consensus 45 ~~~~~~~~~A~~~~~~al~-~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLK-V--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHhcCChHHHHHHHHHHHh-c--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 4577999999999999988 3 454 4588889899999999999999998 221 11 1256889999999999
Q ss_pred ChHHHHHHHHhcC-CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh-----hHHHHHHHHHHHcCchhhhhc
Q 043686 77 LFDEARIFIQEYH-ME-RYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSA-----ENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 77 ~~~~A~~l~~~m~-~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~-----~~~~~Li~~y~~~g~~~~A~~ 149 (282)
++++|.++|+++. .. ++..+++.++..|.+.|++++|.+.++.+.+..|.+. ..+..+...|.+.|++++|..
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999986 33 4588999999999999999999999999997766432 245678888999999999998
Q ss_pred ccceeeecC--eE---EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCC--Ccccccchhhhhhhhhh-hhHHHHHH
Q 043686 150 AYSWIEFRN--KV---HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKP--DFSLHYVDEERKWTQIG-HSEILALS 221 (282)
Q Consensus 150 ~~~~~~~~~--~~---~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~--~t~~~~~~~~~~~~~~~-~~~~l~~~ 221 (282)
.+....... .. ..+...+.+.|+.++|. .+++++.+.+ |+. .++..+...+.+.+... ....+...
T Consensus 202 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~----~~~~~~~~~~--p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 202 LLKKALAADPQCVRASILLGDLALAQGDYAAAI----EALERVEEQD--PEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHH----HHHHHHHHHC--hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666543211 11 23445677899999998 7777777543 332 33444555555655555 22223333
Q ss_pred hhhccCCCCCeEEEeeccccccchHHHHHHHHHhhcceEEeecCCccccccCCcc
Q 043686 222 FGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFC 276 (282)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 276 (282)
....+..... ..+...+.+.|+.+.|.++++++.+.. |+...++++..+.+
T Consensus 276 ~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~---P~~~~~~~l~~~~~ 326 (389)
T PRK11788 276 LEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRH---PSLRGFHRLLDYHL 326 (389)
T ss_pred HHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhC---cCHHHHHHHHHHhh
Confidence 3333322222 235677889999999999999887653 34444554444433
No 9
>PF13041 PPR_2: PPR repeat family
Probab=99.52 E-value=2.2e-14 Score=89.65 Aligned_cols=47 Identities=23% Similarity=0.341 Sum_probs=28.5
Q ss_pred CChhHHHHHHHHHHccCChHHHHHHHHhcC---CCCCHHHHHHHHHHHHh
Q 043686 60 PKVTHHALMVSVLARAGLFDEARIFIQEYH---MERYPEVLRALLEGCRI 106 (282)
Q Consensus 60 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~p~~~~~~~li~~~~~ 106 (282)
||+++||+||++|++.|++++|.++|++|. +.||..||++||++|||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 556666666666666666666666666654 55666666666666553
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.47 E-value=3.7e-13 Score=131.51 Aligned_cols=248 Identities=10% Similarity=0.040 Sum_probs=135.6
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHHHHHHHccCChHH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALMVSVLARAGLFDE 80 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~li~~~~~~g~~~~ 80 (282)
.|.+.|+.++|..+|.++.. .+ ..+...+..+...+.+.|++++|.++++ ...+.+..+|..+...|.+.|++++
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAE-LN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHH-hC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34445555555555555544 21 1233445555555666666666666665 2233345566666666666666666
Q ss_pred HHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecC
Q 043686 81 ARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRN 158 (282)
Q Consensus 81 A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~ 158 (282)
|.+.|+++. ..| +...|..+...|.+.|++++|...|+++.+..|++..++..+...|.+.|++++|...++.+....
T Consensus 620 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 699 (899)
T TIGR02917 620 AVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH 699 (899)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 666666653 233 355666666666666666666666666666666666666666666777777766666554443222
Q ss_pred eE-----EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhhhhhhh-hHHHHHHhhhccCCCCCe
Q 043686 159 KV-----HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGH-SEILALSFGLISTQVGAT 232 (282)
Q Consensus 159 ~~-----~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~ 232 (282)
.. ..+...+...|+.++|. ..|+++.+.+ |+..++..+...+.+.+.... ...+.......+......
T Consensus 700 ~~~~~~~~~~~~~~~~~g~~~~A~----~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 773 (899)
T TIGR02917 700 PKAALGFELEGDLYLRQKDYPAAI----QAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLR 773 (899)
T ss_pred cCChHHHHHHHHHHHHCCCHHHHH----HHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 11 12223345667777776 6666665543 444444444444444444431 112222222222211111
Q ss_pred EEEeeccccccchHHHHHHHHHhhcce
Q 043686 233 IHVTKNLRMRHICHDFAKAISKMVEGE 259 (282)
Q Consensus 233 ~~~~~~~~~~g~~~~a~~~~~~m~~~~ 259 (282)
..+...+.+.|+.+.|.+.|+++....
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 123445667888888888888887654
No 11
>PF13041 PPR_2: PPR repeat family
Probab=99.46 E-value=1.3e-13 Score=86.14 Aligned_cols=48 Identities=15% Similarity=0.202 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHH--hcCCCChhHHHHHHHHHHH
Q 043686 92 RYPEVLRALLEGCRIHVQVKTGKRVIDQLC--ELKPLSAENYIMLSNWYAA 140 (282)
Q Consensus 92 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~p~~~~~~~~Li~~y~~ 140 (282)
||+++||+||++|++.|++++|.++|++|. ++.| |..||++||++|+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P-~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKP-DSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHcC
Confidence 899999999999999999999999999999 5778 66999999999985
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.43 E-value=1.1e-12 Score=128.22 Aligned_cols=268 Identities=9% Similarity=-0.050 Sum_probs=176.8
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCCh
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLF 78 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~ 78 (282)
...|.+.|++++|++.|+++.+ .. +.+...+..+..++.+.|+.++|...++ ....| +..++..+...+.+.|++
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 685 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLA-LQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRT 685 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-hC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Confidence 4567888999999999999876 32 2345677888888888999999999998 44555 477888889999999999
Q ss_pred HHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeee
Q 043686 79 DEARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEF 156 (282)
Q Consensus 79 ~~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~ 156 (282)
++|.++++.+. ..++..+|..+...|.+.|++++|.+.|+++....|++ .++..+..+|.+.|++++|...+.....
T Consensus 686 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 686 ESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999998876 33457788888888888999999999999888888866 6777888888888888888874433221
Q ss_pred cC----eE-EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCC-CcccccchhhhhhhhhhhhHHHHHHhhhccCCCC
Q 043686 157 RN----KV-HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKP-DFSLHYVDEERKWTQIGHSEILALSFGLISTQVG 230 (282)
Q Consensus 157 ~~----~~-~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~-~t~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (282)
.. .+ +.+...+...|+.++|. .+|+++.+.. |+. ..+..+...+.+.+.-.....+.....+.+..+.
T Consensus 765 ~~~~~~~~~~~la~~~~~~g~~~~A~----~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 838 (899)
T TIGR02917 765 THPNDAVLRTALAELYLAQKDYDKAI----KHYRTVVKKA--PDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPA 838 (899)
T ss_pred hCCCCHHHHHHHHHHHHHCcCHHHHH----HHHHHHHHhC--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcH
Confidence 11 11 33334456678888887 7777776543 443 3333322222222221111122222333333222
Q ss_pred CeEEEeeccccccchHHHHHHHHHhhcceEEeecCCccccccCCccCCCC
Q 043686 231 ATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRD 280 (282)
Q Consensus 231 ~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (282)
....+...+...|+.+.|.++++++.+.+. .++..+.+....++..|+
T Consensus 839 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 839 ILDTLGWLLVEKGEADRALPLLRKAVNIAP--EAAAIRYHLALALLATGR 886 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHHcCC
Confidence 211223445677888888888888887654 255666555555655554
No 13
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.34 E-value=6.4e-12 Score=92.42 Aligned_cols=98 Identities=48% Similarity=0.710 Sum_probs=83.9
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhh--------hhhhh-hhHHHHHHhhhccCCCCC
Q 043686 161 HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERK--------WTQIG-HSEILALSFGLISTQVGA 231 (282)
Q Consensus 161 ~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~--------~~~~~-~~~~l~~~~~~~~~~~~~ 231 (282)
+.++++...+++. .+..+|...|+.|+.....+.+....+ ...+. |+|+++++||++..
T Consensus 9 h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgli~~---- 76 (116)
T PF14432_consen 9 HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGLINT---- 76 (116)
T ss_pred EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhcccce----
Confidence 7899999999886 566788888999998777665555443 44556 99999999999876
Q ss_pred eEEEeecc-ccccchHHHHHHHHHhhcceEEeecCCcccccc
Q 043686 232 TIHVTKNL-RMRHICHDFAKAISKMVEGEIIIKDPSCFHHFE 272 (282)
Q Consensus 232 ~~~~~~~~-~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 272 (282)
++++++ +.|+||+++.+++++...|.++++|+.+||||+
T Consensus 77 --~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 77 --RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred --eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 588998 999999999999999999999999999999985
No 14
>PF12854 PPR_1: PPR repeat
Probab=99.29 E-value=4.7e-12 Score=71.95 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=29.4
Q ss_pred ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC
Q 043686 56 RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH 89 (282)
Q Consensus 56 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 89 (282)
.|+.||.+|||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4788888899999999999999999999888885
No 15
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=5.1e-10 Score=97.05 Aligned_cols=150 Identities=14% Similarity=0.161 Sum_probs=121.5
Q ss_pred ChhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHH
Q 043686 1 MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDE 80 (282)
Q Consensus 1 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~ 80 (282)
||.|+|+-...++|.+++++-.. ...+.+..+||.+|.+-+-.-.-+-.-+.......||..|+|+++++.++.|+++.
T Consensus 213 mI~Gl~K~~~~ERA~~L~kE~~~-~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ 291 (625)
T KOG4422|consen 213 MIAGLCKFSSLERARELYKEHRA-AKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFED 291 (625)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH-hhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHH
Confidence 68999999999999999999998 88899999999999986654443333333338899999999999999999999987
Q ss_pred HHH----HHHhcC---CCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHH----h-----cCCCChhHHHHHHHHHHHcCc
Q 043686 81 ARI----FIQEYH---MERYPEVLRALLEGCRIHVQVKT-GKRVIDQLC----E-----LKPLSAENYIMLSNWYAAEAK 143 (282)
Q Consensus 81 A~~----l~~~m~---~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~----~-----~~p~~~~~~~~Li~~y~~~g~ 143 (282)
|.+ ++.+|+ ++|...+|..+|.-+++.++..+ |..++.++. | ..|++...|.+.++.+....+
T Consensus 292 ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d 371 (625)
T KOG4422|consen 292 ARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRD 371 (625)
T ss_pred HHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhh
Confidence 665 455676 89999999999999999988755 666666665 2 345555677888888888888
Q ss_pred hhhhhccc
Q 043686 144 WDVVNQAY 151 (282)
Q Consensus 144 ~~~A~~~~ 151 (282)
.+-|.++.
T Consensus 372 ~~LA~~v~ 379 (625)
T KOG4422|consen 372 LELAYQVH 379 (625)
T ss_pred HHHHHHHH
Confidence 88888843
No 16
>PF12854 PPR_1: PPR repeat
Probab=99.06 E-value=1.8e-10 Score=65.39 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 90 MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 90 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
+.||++|||+||.+||+.|++++|.++|++|+
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 58999999999999999999999999999984
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.02 E-value=2.9e-09 Score=101.11 Aligned_cols=242 Identities=10% Similarity=-0.020 Sum_probs=166.8
Q ss_pred CChHHHHHHHHHhHHhCC-CCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHH
Q 043686 9 GQRELGLSLFSELEKKSS-IEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARI 83 (282)
Q Consensus 9 g~~~~A~~lf~~m~~~~g-~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~ 83 (282)
+++++|++.|++..+ .+ ..|+. ..|..+-..+...|++++|...++ ..+.|+ ...|..+...|...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~-~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALD-LGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHh-cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 678999999999887 54 34543 466667777888999999999999 666776 5688899999999999999999
Q ss_pred HHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeec----
Q 043686 84 FIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFR---- 157 (282)
Q Consensus 84 l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~---- 157 (282)
.|++.. ..|+ ..+|..+...|...|++++|.+.|++..++.|++...+..+...|.+.|++++|...+......
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~ 466 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA 466 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 999854 5564 7889999999999999999999999999999998888999999999999999999866543221
Q ss_pred CeE-EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCC-cccc---cch---h-hhhhhhhhhhH-HHHHHhhhccC
Q 043686 158 NKV-HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPD-FSLH---YVD---E-ERKWTQIGHSE-ILALSFGLIST 227 (282)
Q Consensus 158 ~~~-~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~-t~~~---~~~---~-~~~~~~~~~~~-~l~~~~~~~~~ 227 (282)
..+ +.+-..+...|+.++|. ..|++-.+. .|+.. ++.. .+. . +...+.+..+. .+.....+.+.
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~----~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAI----EKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHH----HHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 111 23334456678888888 555554432 23321 1111 110 0 11112222111 12222233222
Q ss_pred CCCCeEEEeeccccccchHHHHHHHHHhhc
Q 043686 228 QVGATIHVTKNLRMRHICHDFAKAISKMVE 257 (282)
Q Consensus 228 ~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~ 257 (282)
.......+...+...|+.++|.++|++..+
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 222222346667799999999999988754
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.00 E-value=3e-09 Score=101.50 Aligned_cols=245 Identities=8% Similarity=-0.059 Sum_probs=123.4
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFD 79 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~ 79 (282)
.+.+.|++++|+..|++... +.|+ ...+..+..++...|+.++|...++ ....|+ ...+..+ ..+.+.|+++
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~---l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~ 194 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWL---AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLP 194 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHH
Confidence 34555666666666666554 3343 2344555555666666666666555 223332 2222222 2355566666
Q ss_pred HHHHHHHhcC-CC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhh----hhcccc
Q 043686 80 EARIFIQEYH-ME--RYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDV----VNQAYS 152 (282)
Q Consensus 80 ~A~~l~~~m~-~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~----A~~~~~ 152 (282)
+|.+.++.+. .. ++...+..+...+.+.|++++|.+.|+++.+..|+++..+..|...|...|++++ |...+.
T Consensus 195 eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 195 EDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 6666666543 11 2233344445566777777777777777777777777777777777777777775 444332
Q ss_pred ee----eecCeE-EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcc-cccchhhhhhhhhh-hhHHHHHHhhhc
Q 043686 153 WI----EFRNKV-HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFS-LHYVDEERKWTQIG-HSEILALSFGLI 225 (282)
Q Consensus 153 ~~----~~~~~~-~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~-~~~~~~~~~~~~~~-~~~~l~~~~~~~ 225 (282)
.. |..... ..+-..+...|+.++|. ..+++..+ ..|+.... ..+...+.+.+... ....+.......
T Consensus 275 ~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~----~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 275 HALQFNSDNVRIVTLYADALIRTGQNEKAI----PLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHH----HHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 21 111001 22333455667777776 44444443 24554322 22222223333332 111111111111
Q ss_pred cCCCCCeEEEeeccccccchHHHHHHHHHhhcc
Q 043686 226 STQVGATIHVTKNLRMRHICHDFAKAISKMVEG 258 (282)
Q Consensus 226 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~ 258 (282)
+............+...|+.++|.+.|++....
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 111111111223466788888888888876654
No 19
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.97 E-value=4.6e-08 Score=80.11 Aligned_cols=144 Identities=14% Similarity=0.143 Sum_probs=115.9
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCCh
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLF 78 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~ 78 (282)
..|...|++++|.+.|++..+ . .|+ ...+..+...+...|++++|.+.++ ....| +...+..+...|...|++
T Consensus 39 ~~~~~~~~~~~A~~~~~~~l~-~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~ 115 (234)
T TIGR02521 39 LGYLEQGDLEVAKENLDKALE-H--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKY 115 (234)
T ss_pred HHHHHCCCHHHHHHHHHHHHH-h--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccH
Confidence 457788999999999999876 3 344 5677778888899999999999998 33344 466788888999999999
Q ss_pred HHHHHHHHhcC-C--CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 79 DEARIFIQEYH-M--ER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 79 ~~A~~l~~~m~-~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
++|.+.|++.. . .| +...|..+...+...|++++|.+.|.+.....|++...+..+...|...|++++|..
T Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 99999998864 1 12 355777788889999999999999999998888887888888888888888777743
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.96 E-value=1.1e-08 Score=97.74 Aligned_cols=173 Identities=8% Similarity=-0.052 Sum_probs=122.3
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHH-
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDE- 80 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~- 80 (282)
+.+.|++++|+.+++++.. ..-.++...+..+..++.+.|+.++|...++ ....| +...+..+...|.+.|+.++
T Consensus 187 l~~~g~~~eA~~~~~~~l~-~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLP-FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHHcCCHHHHHHHHHHHHh-cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhh
Confidence 5567777778777777665 3323344455555667778888888888888 44445 36677778888888888885
Q ss_pred ---HHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceee
Q 043686 81 ---ARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIE 155 (282)
Q Consensus 81 ---A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~ 155 (282)
|...|++.. ..|+ ..++..+...+.+.|++++|...+++.....|+++..+..+...|.+.|++++|...+....
T Consensus 266 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 266 KLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 788887754 5665 67888888888888888888888888888888887788888888888888888888655433
Q ss_pred ecCeEE-----EEecCCCCCCChHHHHH
Q 043686 156 FRNKVH-----VFGTGDVSCPRSEGIFW 178 (282)
Q Consensus 156 ~~~~~~-----~~i~~~~~~~~~~~a~~ 178 (282)
..+--+ .....+...|+.++|..
T Consensus 346 ~~~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 346 REKGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred HhCccchHHHHHHHHHHHHCCCHHHHHH
Confidence 211111 11223566777777773
No 21
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.96 E-value=6.3e-09 Score=94.16 Aligned_cols=184 Identities=13% Similarity=0.131 Sum_probs=152.7
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFD 79 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~ 79 (282)
.|-..|+++-|++.|++-.+ +.|+- ..|+.|-+|+-..|++.+|.+.+. ..+.|+ ..+.+.|-..|...|.++
T Consensus 295 iYyeqG~ldlAI~~Ykral~---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e 371 (966)
T KOG4626|consen 295 IYYEQGLLDLAIDTYKRALE---LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIE 371 (966)
T ss_pred EEeccccHHHHHHHHHHHHh---cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccch
Confidence 46678999999999999877 77875 589999999999999999999999 667776 778999999999999999
Q ss_pred HHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce-eee
Q 043686 80 EARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW-IEF 156 (282)
Q Consensus 80 ~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~-~~~ 156 (282)
+|.++|...- +.|. ...+|.|-+.|-+.|++++|...|++...+.|.-..+|+.+-..|-..|+++.|..-... +..
T Consensus 372 ~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 372 EATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 9999999854 7787 778999999999999999999999999999998889999999999999999999883332 222
Q ss_pred cCeE----EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCC
Q 043686 157 RNKV----HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKP 196 (282)
Q Consensus 157 ~~~~----~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~ 196 (282)
+... +.+-+.|...|...+|+ .-+++-. .++||-
T Consensus 452 nPt~AeAhsNLasi~kDsGni~~AI----~sY~~aL--klkPDf 489 (966)
T KOG4626|consen 452 NPTFAEAHSNLASIYKDSGNIPEAI----QSYRTAL--KLKPDF 489 (966)
T ss_pred CcHHHHHHhhHHHHhhccCCcHHHH----HHHHHHH--ccCCCC
Confidence 2222 45667788899999887 4444333 356664
No 22
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.95 E-value=4.4e-09 Score=90.10 Aligned_cols=150 Identities=13% Similarity=0.114 Sum_probs=92.5
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCCh
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLF 78 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~ 78 (282)
+..+.+.|+++++.+++++........++...|..+-..+.+.|+.++|.+.++ ....|+ ....+.++..+...|+.
T Consensus 117 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~ 196 (280)
T PF13429_consen 117 LQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDY 196 (280)
T ss_dssp -H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCh
Confidence 345667777888888887765512344566666777777777888888888887 556664 66677778888888888
Q ss_pred HHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686 79 DEARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 79 ~~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
+++.++++... ..+|...|..+..+|...|+.++|...|++.....|+|+.....+.+++...|+.++|..+.
T Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 197 DEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp HHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 87777776653 23345567777777888888888888888877777777777777888888888877776643
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=2.7e-08 Score=86.56 Aligned_cols=172 Identities=12% Similarity=0.146 Sum_probs=128.0
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHH--HHhcCCCHH--HHHHHhh---------------------ccCC
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLH--ACSTAGMVE--EGWLCFN---------------------RIRS 59 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~--a~~~~g~~~--~a~~l~~---------------------~g~~ 59 (282)
....|.+.++.-+|+.|+. +|+.-....--.|+. .|-++.++- +=.+... ....
T Consensus 125 mIS~~EvKDs~ilY~~m~~-e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~ 203 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRS-ENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETL 203 (625)
T ss_pred HHhhcccchhHHHHHHHHh-cCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhc
Confidence 4567899999999999999 988777665555554 233333321 1111111 2234
Q ss_pred C-ChhHHHHHHHHHHccCChHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH--hcCCCChhHHHH
Q 043686 60 P-KVTHHALMVSVLARAGLFDEARIFIQEYH---MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC--ELKPLSAENYIM 133 (282)
Q Consensus 60 p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~p~~~~~~~~ 133 (282)
| +..||.+||.++||--..+.|.+++++-. .+-+..+||.+|.+-.-. ...++..+|. ++.| |..|+|+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~P-nl~TfNa 278 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTP-NLFTFNA 278 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCC-chHhHHH
Confidence 4 67899999999999999999999999864 677889999999874322 2378899998 5788 6699999
Q ss_pred HHHHHHHcCchhhhhcccceeeecCeEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhhhh
Q 043686 134 LSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQ 211 (282)
Q Consensus 134 Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~ 211 (282)
+++.-.+.|+++.| ...+..++.+|++-|+.|...+|..++...++++.
T Consensus 279 lL~c~akfg~F~~a-----------------------------r~aalqil~EmKeiGVePsLsSyh~iik~f~re~d 327 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDA-----------------------------RKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESD 327 (625)
T ss_pred HHHHHHHhcchHHH-----------------------------HHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCC
Confidence 99999999998777 22233899999999999999999877766555443
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.90 E-value=5.7e-08 Score=92.37 Aligned_cols=147 Identities=10% Similarity=-0.028 Sum_probs=128.8
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFD 79 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~ 79 (282)
.+...|++++|+..|++..+ ..|+ ..+|..+...+...|++++|...|+ ....|+ ..+|..+...|...|+++
T Consensus 340 ~~~~~g~~~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 416 (615)
T TIGR00990 340 FKCLKGKHLEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFA 416 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 45678999999999999877 5676 4478888888999999999999999 555564 788999999999999999
Q ss_pred HHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686 80 EARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 80 ~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
+|.+.|++.. ..|+ ...|..+...+.+.|++++|...|++..+..|+++..|+.+...|...|++++|...+..
T Consensus 417 ~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 417 QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred HHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999864 6675 778888999999999999999999999999999999999999999999999999985444
No 25
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.86 E-value=1.5e-08 Score=91.81 Aligned_cols=243 Identities=14% Similarity=0.077 Sum_probs=167.0
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHH-HHHHHHccCChH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHAL-MVSVLARAGLFD 79 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~-li~~~~~~g~~~ 79 (282)
.+-..|+.++|+.+|+.|.+ ++|+- ..|..+-.++...|+.+.|.+.|. ..+.|+.+...+ +-..+-..|+++
T Consensus 125 ~~kerg~~~~al~~y~~aie---l~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ 201 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIE---LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLE 201 (966)
T ss_pred HHHHhchHHHHHHHHHHHHh---cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccc
Confidence 45578999999999999998 77865 488899999999999999999998 778887665543 444444579999
Q ss_pred HHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccc----e
Q 043686 80 EARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYS----W 153 (282)
Q Consensus 80 ~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~----~ 153 (282)
+|...+.+.. .+|. .+.|+.|-..+-..|+...|..-|++...++|.-...|..|-..|...+.+|+|..... .
T Consensus 202 ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 202 EAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred hhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 9999988743 5888 78999999999999999999999999999999888999999999999999999987222 1
Q ss_pred eeecCeE-EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCC-CcccccchhhhhhhhhhhhH-HHHHHhhhccCCCC
Q 043686 154 IEFRNKV-HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKP-DFSLHYVDEERKWTQIGHSE-ILALSFGLISTQVG 230 (282)
Q Consensus 154 ~~~~~~~-~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~-~t~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~ 230 (282)
-+....+ -.+-.-|-..|..+-|+ .-+++-.+ ..|+- ..|..+..+....|.+..++ .-..+..+.++-..
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI----~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~had 355 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAI----DTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHAD 355 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHH----HHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHH
Confidence 2222222 23444567788888887 55555443 34442 33444444444444443111 11222222222221
Q ss_pred CeEEEeeccccccchHHHHHHHHHh
Q 043686 231 ATIHVTKNLRMRHICHDFAKAISKM 255 (282)
Q Consensus 231 ~~~~~~~~~~~~g~~~~a~~~~~~m 255 (282)
..-.+-+.++..|.++.|..++..-
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~a 380 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKA 380 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHH
Confidence 1112333455666666666666544
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.82 E-value=1.9e-07 Score=92.15 Aligned_cols=141 Identities=10% Similarity=-0.043 Sum_probs=69.4
Q ss_pred hhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHH
Q 043686 6 SLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEAR 82 (282)
Q Consensus 6 ~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~ 82 (282)
.+.|++++|+..|+++.. ..|+...+..+..++.+.|++++|...++ ....|+ ...+..+.....+.|++++|.
T Consensus 520 ~~~Gr~eeAi~~~rka~~---~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 520 YQVEDYATALAAWQKISL---HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHCCCHHHHHHHHHHHhc---cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHH
Confidence 355666666666666543 23333344444445555555555555555 222232 112222222233335555555
Q ss_pred HHHHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 83 IFIQEYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 83 ~l~~~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
..|++.. ..|+...|..+...+.+.|+.++|...|++..+..|+++..++.+...+...|+.++|..
T Consensus 597 ~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 597 NDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 5555432 445545555555555555555555555555555555555555555555555555555544
No 27
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.82 E-value=3.4e-07 Score=74.90 Aligned_cols=146 Identities=16% Similarity=0.084 Sum_probs=120.5
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--cc--CCC-ChhHHHHHHHHHHccCC
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RI--RSP-KVTHHALMVSVLARAGL 77 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g--~~p-~~~~~~~li~~~~~~g~ 77 (282)
..|...|++++|.+.|++..+ .. +.+...+..+...+...|++++|.+.++ .. ..| ....+..+...|.+.|+
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~-~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (234)
T TIGR02521 73 LYYQQLGELEKAEDSFRRALT-LN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD 150 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-hC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC
Confidence 457788999999999999876 32 2345677778888999999999999999 11 122 34577788899999999
Q ss_pred hHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcc
Q 043686 78 FDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQA 150 (282)
Q Consensus 78 ~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~ 150 (282)
+++|.+.|++.. ..|+ ...|..+...+.+.|++++|.+.+++.....|+++..+..+...+...|+.++|...
T Consensus 151 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 225 (234)
T TIGR02521 151 FDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRY 225 (234)
T ss_pred HHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999854 4454 678889999999999999999999999987887778888899999999998888654
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.80 E-value=7.7e-08 Score=94.86 Aligned_cols=148 Identities=7% Similarity=-0.053 Sum_probs=126.8
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCHH-HHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDPL-TFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDE 80 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~-ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~ 80 (282)
.+.+.|+.++|...|++..+ .. |+.. .+..+.....+.|++++|...++ ..+.|+...|..+...+.+.|+.++
T Consensus 551 all~~Gd~~eA~~~l~qAL~-l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQ-RG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHh-cC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHH
Confidence 46789999999999999887 43 5443 33334445556799999999999 6677888899999999999999999
Q ss_pred HHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccccee
Q 043686 81 ARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWI 154 (282)
Q Consensus 81 A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~ 154 (282)
|++.|++.. ..|+ ...++.+-..+...|+.++|...|++..+..|+++..+..+..+|...|++++|+..++..
T Consensus 628 A~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 628 AVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999865 6776 7788888889999999999999999999999999999999999999999999999866554
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=98.79 E-value=1.1e-07 Score=89.15 Aligned_cols=176 Identities=13% Similarity=0.037 Sum_probs=130.4
Q ss_pred cCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHH
Q 043686 8 HGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARI 83 (282)
Q Consensus 8 ~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~ 83 (282)
.+++++|...+++..+ +.|+ ...+..+-..+...|++++|...|+ ..+.|+ ...+..+...|...|+.++|..
T Consensus 317 ~~~~~~A~~~~~~Al~---ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 317 QNAMIKAKEHAIKATE---LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred chHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4568999999999887 5564 4566667667888999999999999 667775 6678889999999999999999
Q ss_pred HHHhcC-CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCChhHHHHHHHHHHHcCchhhhhcccceeeecCeE
Q 043686 84 FIQEYH-MERYP-EVLRALLEGCRIHVQVKTGKRVIDQLCEL-KPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKV 160 (282)
Q Consensus 84 l~~~m~-~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~ 160 (282)
.+++.. ..|+. ..+..+...+...|++++|.+.+++.... .|+++..+..+...|...|+.++|...+.........
T Consensus 394 ~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 394 TINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 999964 67763 34444555677789999999999998865 4667677888999999999999999976654332211
Q ss_pred -----EEEecCCCCCCChHHHHHHHHHHHHHHH
Q 043686 161 -----HVFGTGDVSCPRSEGIFWELQSLMKKME 188 (282)
Q Consensus 161 -----~~~i~~~~~~~~~~~a~~~~~~l~~~M~ 188 (282)
+.+...+...| +++...++.+++...
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 22222334444 466655556555544
No 30
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.76 E-value=1.1e-07 Score=96.45 Aligned_cols=147 Identities=8% Similarity=0.038 Sum_probs=95.8
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHH--------
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSV-------- 71 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~-------- 71 (282)
.+.+.|++++|+..|++..+ ..|+ ...+..+-..+...|+.++|.+.|+ ....|+ ...+..+...
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~---~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQ---VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHH
Confidence 35678999999999999887 3454 4566677788999999999999999 444454 3344434333
Q ss_pred ----------------------------------HHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHH
Q 043686 72 ----------------------------------LARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKR 115 (282)
Q Consensus 72 ----------------------------------~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~ 115 (282)
+...|++++|.+.|++.. ..|+ ...+..+...|.+.|++++|..
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 344566666666666643 4554 4556666666777777777777
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686 116 VIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 116 ~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
.+++.....|+++..+..+...+.+.|+.++|...+..
T Consensus 517 ~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~ 554 (1157)
T PRK11447 517 LMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNT 554 (1157)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 77766666666655554444445555555555554433
No 31
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.76 E-value=2.8e-08 Score=93.05 Aligned_cols=180 Identities=12% Similarity=0.087 Sum_probs=117.8
Q ss_pred HHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh----------------------------ccCCCChhHHHH
Q 043686 16 SLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN----------------------------RIRSPKVTHHAL 67 (282)
Q Consensus 16 ~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~----------------------------~g~~p~~~~~~~ 67 (282)
.++..|+. .|+.||.+||.++|.-||..|+++.|. +|. ..-.|...||++
T Consensus 11 nfla~~e~-~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~ 88 (1088)
T KOG4318|consen 11 NFLALHEI-SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTN 88 (1088)
T ss_pred hHHHHHHH-hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHH
Confidence 46778888 999999999999999999999999888 665 122455678888
Q ss_pred HHHHHHccCChH---HHHHHHHhcC--------------------C----CCCHHHHHHHHHHHHhcCChhHHHHHHH--
Q 043686 68 MVSVLARAGLFD---EARIFIQEYH--------------------M----ERYPEVLRALLEGCRIHVQVKTGKRVID-- 118 (282)
Q Consensus 68 li~~~~~~g~~~---~A~~l~~~m~--------------------~----~p~~~~~~~li~~~~~~g~~~~A~~~~~-- 118 (282)
|..+|...||+. ..++.+.... + -||.. +.|.-....|.++.+.++..
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhC
Confidence 888888888754 3333111110 1 12321 12222233333444443331
Q ss_pred --------------HHH--------------h-c-CCCChhHHHHHHHHHHHcCchhhhhcccceeeecCeE------EE
Q 043686 119 --------------QLC--------------E-L-KPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKV------HV 162 (282)
Q Consensus 119 --------------~m~--------------~-~-~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~------~~ 162 (282)
++. . . .| ++.+|.++++.-.-+|+++-|......|...+.. +.
T Consensus 166 Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~-~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwp 244 (1088)
T KOG4318|consen 166 PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAP-TSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWP 244 (1088)
T ss_pred CcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCC-ChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchh
Confidence 111 1 1 24 4588889999999999999999988888777655 34
Q ss_pred EecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhh
Q 043686 163 FGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERK 208 (282)
Q Consensus 163 ~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~ 208 (282)
++.| .+.... ++.++..|++.|+.|++.|+.-.+..+.+
T Consensus 245 Ll~g---~~~~q~----~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 245 LLLG---INAAQV----FEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred hhhc---CccchH----HHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 5554 333333 34888999999999999998654444444
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.71 E-value=4.7e-09 Score=89.94 Aligned_cols=198 Identities=16% Similarity=0.144 Sum_probs=85.8
Q ss_pred hcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHHHHHH
Q 043686 7 LHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDEARIF 84 (282)
Q Consensus 7 ~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~l 84 (282)
..++.++|++.++++.. .+-. +...|..++.. ...+++++|.+++. ..-.++...+..++..|.+.|+++++.++
T Consensus 56 ~~~~~~~A~~ay~~l~~-~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 132 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLA-SDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEEL 132 (280)
T ss_dssp -----------------------------------------------------------------H-HHHTT-HHHHHHH
T ss_pred ccccccccccccccccc-cccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHH
Confidence 46778888888888876 4322 34456666665 67888888888887 22335666777888888888889888888
Q ss_pred HHhcC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccccee----ee
Q 043686 85 IQEYH----MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWI----EF 156 (282)
Q Consensus 85 ~~~m~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~----~~ 156 (282)
+++.. ..++...|..+...+.+.|+.++|.+.+++..+..|+++...+.++..+...|+.+++...+... +.
T Consensus 133 l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~ 212 (280)
T PF13429_consen 133 LEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD 212 (280)
T ss_dssp HHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT
T ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC
Confidence 88743 34567788888888888899999999999888888888888888888888888888866633332 22
Q ss_pred cCeE-EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCC-Ccccccchhhhhhhhhh
Q 043686 157 RNKV-HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKP-DFSLHYVDEERKWTQIG 213 (282)
Q Consensus 157 ~~~~-~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~-~t~~~~~~~~~~~~~~~ 213 (282)
...+ ..+-.++...|+.++|. ..|++... ..|+. .......+.....|...
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al----~~~~~~~~--~~p~d~~~~~~~a~~l~~~g~~~ 265 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEAL----EYLEKALK--LNPDDPLWLLAYADALEQAGRKD 265 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHH----HHHHHHHH--HSTT-HHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHhcccccccccc----cccccccc--ccccccccccccccccccccccc
Confidence 2222 34445566678888887 55555443 34543 33344444444444443
No 33
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.65 E-value=1.9e-07 Score=94.72 Aligned_cols=244 Identities=10% Similarity=0.026 Sum_probs=157.3
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChh---HHH-----------
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVT---HHA----------- 66 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~---~~~----------- 66 (282)
.+...|++++|+..|++..+ ..| |...+..+-.++.+.|+.++|...|+ ....|+.. .|.
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~---~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVR---ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 45678999999999999877 446 66788888889999999999999998 44445421 122
Q ss_pred -HHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCc
Q 043686 67 -LMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAK 143 (282)
Q Consensus 67 -~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~ 143 (282)
.+...+.+.|++++|.+.|++.. ..|+ ...+..|...|.+.|++++|.+.|++.....|++...+..|...|. .++
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcC
Confidence 22456778999999999999865 5564 7788889999999999999999999999999988888888888885 467
Q ss_pred hhhhhcccceeeecCe--------------EEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcc-cccchhhhh
Q 043686 144 WDVVNQAYSWIEFRNK--------------VHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFS-LHYVDEERK 208 (282)
Q Consensus 144 ~~~A~~~~~~~~~~~~--------------~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~-~~~~~~~~~ 208 (282)
.++|...+...+.... .......+...|+.++|. ..+++..+ ..|+.... ..+...+.+
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~----~~~~~Al~--~~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAA----ELQRQRLA--LDPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHH----HHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 7888775544322110 000112234578888887 66665554 34664322 222333333
Q ss_pred hhhhhhhHH-HHHHhhhccCCCCCeEEEeeccccccchHHHHHHHHHhhc
Q 043686 209 WTQIGHSEI-LALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVE 257 (282)
Q Consensus 209 ~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~ 257 (282)
.+....+.. +.......+..+.......--+...|+.+.|...++++..
T Consensus 508 ~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~ 557 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPR 557 (1157)
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCc
Confidence 333332211 1111222221111100001123356788888888887653
No 34
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.57 E-value=2.9e-06 Score=68.52 Aligned_cols=141 Identities=12% Similarity=0.042 Sum_probs=123.2
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCHH-HHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDPL-TFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFD 79 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~-ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~ 79 (282)
+|.+.|+...|..-+++-.+ ..|+.. ++.++-..|.+.|..+.|.+-|+ ..+.|+ ..+.|.....+|..|+++
T Consensus 44 ~YL~~gd~~~A~~nlekAL~---~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~ 120 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALE---HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPE 120 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChH
Confidence 68899999999999999887 557654 88888889999999999999999 777784 778899999999999999
Q ss_pred HHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhh
Q 043686 80 EARIFIQEYHMERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVV 147 (282)
Q Consensus 80 ~A~~l~~~m~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A 147 (282)
+|...|++..-.|+ ..||..+.-+-.+.|+.+.|.+.|++..+.+|+.+.+.-.+.+...+.|++-.|
T Consensus 121 eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 121 EAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 99999998532443 578999999999999999999999999999999888888998888888886666
No 35
>PRK12370 invasion protein regulator; Provisional
Probab=98.56 E-value=5.7e-07 Score=84.42 Aligned_cols=172 Identities=8% Similarity=-0.047 Sum_probs=127.6
Q ss_pred CChHHHHHHHHHhHHhCCCCCCHH-HHHHHHHHHh---------cCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHcc
Q 043686 9 GQRELGLSLFSELEKKSSIEIDPL-TFAAVLHACS---------TAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARA 75 (282)
Q Consensus 9 g~~~~A~~lf~~m~~~~g~~p~~~-ty~~ll~a~~---------~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~ 75 (282)
+..++|+.+|++..+ ..|+.. .|..+-.++. ..++.++|...++ ..+.|+ ...+..+-..+...
T Consensus 275 ~~~~~A~~~~~~Al~---ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVN---MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 346789999999877 667654 3433333322 3355889999998 667774 77888888899999
Q ss_pred CChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686 76 GLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 76 g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
|++++|.+.|++.. ..|+ ...|..+...|...|++++|...+++..+++|.++..+..+...+...|++++|...+..
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999999999854 6776 778898999999999999999999999999998765655566667778999999886544
Q ss_pred eeec---CeE---EEEecCCCCCCChHHHHHHHHHHHHHH
Q 043686 154 IEFR---NKV---HVFGTGDVSCPRSEGIFWELQSLMKKM 187 (282)
Q Consensus 154 ~~~~---~~~---~~~i~~~~~~~~~~~a~~~~~~l~~~M 187 (282)
.... +.. ..+-..+...|+.++|. ..+.++
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~----~~~~~~ 467 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELAR----KLTKEI 467 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHH----HHHHHh
Confidence 3211 111 12233456789999998 555554
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=1.4e-07 Score=86.06 Aligned_cols=196 Identities=12% Similarity=0.056 Sum_probs=116.5
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCC-------------------------------C-CHHHHHHHHHHHhcCCCHHHH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIE-------------------------------I-DPLTFAAVLHACSTAGMVEEG 50 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~-------------------------------p-~~~ty~~ll~a~~~~g~~~~a 50 (282)
.+|..-+++++|.++|+..++....+ | .+.||.++-+.|+-.++.+.|
T Consensus 361 rayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~A 440 (638)
T KOG1126|consen 361 RAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTA 440 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHH
Confidence 36777888999999999987721111 1 234556666666666666666
Q ss_pred HHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 043686 51 WLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKP 125 (282)
Q Consensus 51 ~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p 125 (282)
...|+ .-+.| ...+|+-+..=+.....+|.|...|+... +.|+ -.+|..|...|.|.++++.|+-.|+++.+++|
T Consensus 441 ik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP 520 (638)
T KOG1126|consen 441 IKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP 520 (638)
T ss_pred HHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc
Confidence 66666 34444 35555555555666666666666666643 3333 34566666667777777777777777777777
Q ss_pred CChhHHHHHHHHHHHcCchhhhhccccee---eecCeE--EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCccc
Q 043686 126 LSAENYIMLSNWYAAEAKWDVVNQAYSWI---EFRNKV--HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSL 200 (282)
Q Consensus 126 ~~~~~~~~Li~~y~~~g~~~~A~~~~~~~---~~~~~~--~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~ 200 (282)
.+.+.-..+...|-+.|+.|+|...++.- +..+.. ......+...++.++|+ ..+++++ -+.|+..+..
T Consensus 521 ~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal----~~LEeLk--~~vP~es~v~ 594 (638)
T KOG1126|consen 521 SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEAL----QELEELK--ELVPQESSVF 594 (638)
T ss_pred cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHH----HHHHHHH--HhCcchHHHH
Confidence 77666667777777777777777744431 111111 01111123345566666 4455544 3567776665
Q ss_pred ccch
Q 043686 201 HYVD 204 (282)
Q Consensus 201 ~~~~ 204 (282)
+++.
T Consensus 595 ~llg 598 (638)
T KOG1126|consen 595 ALLG 598 (638)
T ss_pred HHHH
Confidence 5544
No 37
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.52 E-value=2.9e-06 Score=65.24 Aligned_cols=118 Identities=11% Similarity=0.050 Sum_probs=97.7
Q ss_pred HHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-C
Q 043686 15 LSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-M 90 (282)
Q Consensus 15 ~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~ 90 (282)
..+|++-.+ +.|+. +...-.++...|++++|...|+ ..+.| +...|..+..++.+.|++++|...|+... .
T Consensus 13 ~~~~~~al~---~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLS---VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHH---cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456666666 55664 5556677889999999999999 66777 57788999999999999999999999965 5
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHH
Q 043686 91 ER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNW 137 (282)
Q Consensus 91 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~ 137 (282)
.| +..+|..+..++.+.|+.++|...|+......|+++..|...-..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 66 488999999999999999999999999999999887777655443
No 38
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.47 E-value=5.5e-06 Score=80.78 Aligned_cols=181 Identities=8% Similarity=-0.118 Sum_probs=131.2
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCC-CCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-----hhHHHHHHHHHHc
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSI-EIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-----VTHHALMVSVLAR 74 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~-~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-----~~~~~~li~~~~~ 74 (282)
.++...|+.++|+..|+++.+ .+- .|+..-. .+..++...|++++|..+|+ ....|+ ...+..|..++..
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~-~~~~~P~~a~~-~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKA-EGQIIPPWAQR-WVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhc-cCCCCCHHHHH-HHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 345677999999999999988 553 2443222 24668899999999999998 223332 2456677778899
Q ss_pred cCChHHHHHHHHhcC-CCC-------------C---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHH
Q 043686 75 AGLFDEARIFIQEYH-MER-------------Y---PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNW 137 (282)
Q Consensus 75 ~g~~~~A~~l~~~m~-~~p-------------~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~ 137 (282)
.|++++|.++++.+. ..| | ...+..+...+...|+.++|.++++++....|+++..+..+...
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l 402 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASV 402 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999998875 333 2 23556677789999999999999999999999999999999999
Q ss_pred HHHcCchhhhhcccceeeecCeE-----EEEecCCCCCCChHHHHHHHHHHHHHHHh
Q 043686 138 YAAEAKWDVVNQAYSWIEFRNKV-----HVFGTGDVSCPRSEGIFWELQSLMKKMEG 189 (282)
Q Consensus 138 y~~~g~~~~A~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~a~~~~~~l~~~M~~ 189 (282)
|...|+.++|+..++......-- ..........+++++|. .+++++.+
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~----~~~~~ll~ 455 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMD----VLTDDVVA 455 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHH----HHHHHHHH
Confidence 99999999999855543322111 12222345667788877 66666654
No 39
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.44 E-value=6.3e-07 Score=81.79 Aligned_cols=150 Identities=14% Similarity=0.147 Sum_probs=112.0
Q ss_pred hhhhhhcCChHHHHHHHHHhHHh----CC-CCCCHHHH-HHHHHHHhcCCCHHHHHHHhh---------c-cCCCC-hhH
Q 043686 2 ILGYSLHGQRELGLSLFSELEKK----SS-IEIDPLTF-AAVLHACSTAGMVEEGWLCFN---------R-IRSPK-VTH 64 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~----~g-~~p~~~ty-~~ll~a~~~~g~~~~a~~l~~---------~-g~~p~-~~~ 64 (282)
-..|+..|+++.|+.+|++-.+. .| -.|...+- +.+-..|...+++++|..+|+ . .-.|. ..+
T Consensus 206 a~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~ 285 (508)
T KOG1840|consen 206 AEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAAT 285 (508)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 35789999999999999997651 13 13444333 335557888999999999998 2 23333 457
Q ss_pred HHHHHHHHHccCChHHHHHHHHhc-C--------CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCC--
Q 043686 65 HALMVSVLARAGLFDEARIFIQEY-H--------MERYPE-VLRALLEGCRIHVQVKTGKRVIDQLCE-----LKPLS-- 127 (282)
Q Consensus 65 ~~~li~~~~~~g~~~~A~~l~~~m-~--------~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~p~~-- 127 (282)
++.|-.+|++.|++++|...+++. . ..|.+. .++.+...|+..+++++|..++....+ ..+++
T Consensus 286 l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~ 365 (508)
T KOG1840|consen 286 LNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVN 365 (508)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchH
Confidence 778888999999999999988773 2 234544 457777789999999999999998773 23333
Q ss_pred -hhHHHHHHHHHHHcCchhhhhccc
Q 043686 128 -AENYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 128 -~~~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
..+++.|-..|-+.|++++|++.+
T Consensus 366 ~a~~~~nl~~l~~~~gk~~ea~~~~ 390 (508)
T KOG1840|consen 366 LAKIYANLAELYLKMGKYKEAEELY 390 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHH
Confidence 578999999999999999887644
No 40
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.38 E-value=1.4e-05 Score=78.02 Aligned_cols=148 Identities=14% Similarity=0.020 Sum_probs=125.0
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFD 79 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~ 79 (282)
......|+.++|+++|.+... .. ..+...+..+-.++.+.|++++|.++|+ ....|+ ...+..+...+...|+.+
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~-~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRV-HM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 455678999999999999875 22 2344468899999999999999999999 556664 666778999999999999
Q ss_pred HHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686 80 EARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 80 ~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
+|...+++.. ..|+ .. |..+...+...|+.++|...++++.+..|+++..+..+...+.+.|..++|...++.
T Consensus 101 eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 101 EALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 9999999964 4565 56 888999999999999999999999999999988888899999999999988875543
No 41
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.35 E-value=2.1e-05 Score=67.94 Aligned_cols=143 Identities=9% Similarity=-0.030 Sum_probs=98.8
Q ss_pred cCChHHHHHHHHHhHHhCCCCCCH--HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHH
Q 043686 8 HGQRELGLSLFSELEKKSSIEIDP--LTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEAR 82 (282)
Q Consensus 8 ~g~~~~A~~lf~~m~~~~g~~p~~--~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~ 82 (282)
.+..+.++.-+.++.......|+. ..|..+-..+...|+.++|...|+ ..+.|+ ...|+.+...|...|++++|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 355567777777776412233332 346666667788888888888888 566664 678888888888889999998
Q ss_pred HHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686 83 IFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 83 ~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
+.|++.. ..|+ ..+|..+...+...|++++|.+.|+...+..|+++ ........+...++.++|...+
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-~~~~~~~l~~~~~~~~~A~~~l 188 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-YRALWLYLAESKLDPKQAKENL 188 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHccCCHHHHHHHH
Confidence 8888854 6676 67888888888888899999988888888888764 2222222233344555554433
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=5.2e-06 Score=76.06 Aligned_cols=115 Identities=13% Similarity=0.085 Sum_probs=67.8
Q ss_pred HHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHH
Q 043686 40 ACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGK 114 (282)
Q Consensus 40 a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~ 114 (282)
.|.+.++++.|.-.|+ ..+.| +.+....+...+-+.|+.|+|+++|++.- .+| |..+--.-+..+.-.++.++|+
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal 577 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEAL 577 (638)
T ss_pred heeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHH
Confidence 3555555555555555 44555 34555555555566666666666666532 222 3333333444455556666666
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccccee
Q 043686 115 RVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWI 154 (282)
Q Consensus 115 ~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~ 154 (282)
+.+++.+++.|++...|..|...|.+.|+.+.|..-|.|+
T Consensus 578 ~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 578 QELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 6666666677766677777777777777777777766664
No 43
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.29 E-value=8.1e-07 Score=50.26 Aligned_cols=30 Identities=13% Similarity=0.324 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH--hcCC
Q 043686 96 VLRALLEGCRIHVQVKTGKRVIDQLC--ELKP 125 (282)
Q Consensus 96 ~~~~li~~~~~~g~~~~A~~~~~~m~--~~~p 125 (282)
+||+||++|++.|++++|.++|++|. ++.|
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 68888888888888888888888887 4555
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=3.1e-06 Score=74.65 Aligned_cols=188 Identities=14% Similarity=0.058 Sum_probs=132.5
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHH-------------------------------HhcCCCHHHHHH
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHA-------------------------------CSTAGMVEEGWL 52 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a-------------------------------~~~~g~~~~a~~ 52 (282)
.-...++++|+.+|+++.++...+. |..||+.++-. |+-.+..++|..
T Consensus 272 ~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~ 351 (559)
T KOG1155|consen 272 SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVM 351 (559)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHH
Confidence 3346789999999999988322332 44577665522 223334666666
Q ss_pred Hhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686 53 CFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-M-ERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS 127 (282)
Q Consensus 53 l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~ 127 (282)
.|+ ..+.|. ...|+-|.+=|....+...|.+-++... + +.|-..|-.|-.+|.-.+...=|+-.|++...+.|+|
T Consensus 352 YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD 431 (559)
T KOG1155|consen 352 YFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPND 431 (559)
T ss_pred HHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence 676 666775 5678888888999999999999998854 4 4478899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCchhhhhcccceeeecCeE-----EEEecCCCCCCChHHHHHHHHHHHHHHHhCCC
Q 043686 128 AENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKV-----HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSL 192 (282)
Q Consensus 128 ~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~ 192 (282)
+..|.+|.+.|.+.+++++|++-+...-..+.+ ..+-..|.+.++.++|....++..+.+...|.
T Consensus 432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~ 501 (559)
T KOG1155|consen 432 SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGE 501 (559)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999955543322222 11122233344444554444444444444443
No 45
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.24 E-value=6e-05 Score=65.13 Aligned_cols=176 Identities=13% Similarity=-0.011 Sum_probs=116.9
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFD 79 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~ 79 (282)
.|.+.|+.++|+..|.+..+ ..|+ ...|+.+-..+...|++++|.+.|+ ..+.|+ ...|..+...|...|+++
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~ 149 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALA---LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYE 149 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 46778999999999999887 4564 5788888899999999999999999 667785 678888999999999999
Q ss_pred HHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCChhHHHHHHHHHHHcCchhhh--h----ccc
Q 043686 80 EARIFIQEYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC-ELKPLSAENYIMLSNWYAAEAKWDVV--N----QAY 151 (282)
Q Consensus 80 ~A~~l~~~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~p~~~~~~~~Li~~y~~~g~~~~A--~----~~~ 151 (282)
+|.+.|+..- ..|+-.........+...++.++|.+.|.+.. ...|+. .. ..+.. ...|+++++ . +.+
T Consensus 150 eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~-~~-~~~~~--~~lg~~~~~~~~~~~~~~~ 225 (296)
T PRK11189 150 LAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ-WG-WNIVE--FYLGKISEETLMERLKAGA 225 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc-cH-HHHHH--HHccCCCHHHHHHHHHhcC
Confidence 9999999843 56653222222222345678999999997755 344422 22 22322 234554433 1 111
Q ss_pred ceeeecC-----eEEEEecCCCCCCChHHHHHHHHHHHHHHHhC
Q 043686 152 SWIEFRN-----KVHVFGTGDVSCPRSEGIFWELQSLMKKMEGD 190 (282)
Q Consensus 152 ~~~~~~~-----~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~ 190 (282)
+..+... ....+-..+.+.|+.++|. ..|++-.+.
T Consensus 226 ~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~----~~~~~Al~~ 265 (296)
T PRK11189 226 TDNTELAERLCETYFYLAKYYLSLGDLDEAA----ALFKLALAN 265 (296)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHCCCHHHHH----HHHHHHHHh
Confidence 1111000 0011223456788889988 777766543
No 46
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.24 E-value=1.1e-05 Score=62.02 Aligned_cols=96 Identities=10% Similarity=-0.074 Sum_probs=82.9
Q ss_pred ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHH
Q 043686 56 RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIM 133 (282)
Q Consensus 56 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~ 133 (282)
..+.|+. +..+...+...|++++|.+.|+... ..| +...|..+...+.+.|++++|...|+....+.|+++.++..
T Consensus 20 l~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~ 97 (144)
T PRK15359 20 LSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQ 97 (144)
T ss_pred HHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3455653 5567888899999999999999865 566 48899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCchhhhhcccce
Q 043686 134 LSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 134 Li~~y~~~g~~~~A~~~~~~ 153 (282)
+...|.+.|+.++|...+..
T Consensus 98 lg~~l~~~g~~~eAi~~~~~ 117 (144)
T PRK15359 98 TGVCLKMMGEPGLAREAFQT 117 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999775543
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.23 E-value=1.2e-05 Score=72.50 Aligned_cols=240 Identities=8% Similarity=-0.031 Sum_probs=134.9
Q ss_pred cCChHHHHHHHHHhHHhCCCCCCHHH-HHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHH--HHHHHHHccCChHHHH
Q 043686 8 HGQRELGLSLFSELEKKSSIEIDPLT-FAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHA--LMVSVLARAGLFDEAR 82 (282)
Q Consensus 8 ~g~~~~A~~lf~~m~~~~g~~p~~~t-y~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~--~li~~~~~~g~~~~A~ 82 (282)
.|++++|++.+..-.+ . .+++.. |-....+..+.|+++.|.+.+. ....|+...+- .....+...|+.+.|.
T Consensus 97 eGd~~~A~k~l~~~~~-~--~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNAD-H--AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHh-c--ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 5999999988887655 3 223333 3333334467899999999998 66777765443 3467888899999999
Q ss_pred HHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChh--------HHHHHHHHHHHcCchhhhhcccc
Q 043686 83 IFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAE--------NYIMLSNWYAAEAKWDVVNQAYS 152 (282)
Q Consensus 83 ~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~--------~~~~Li~~y~~~g~~~~A~~~~~ 152 (282)
+.+++.. ..|+ ......+...|.+.|++++|.+++..+.+..+.++. +|..++.-.....+.+...+...
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999876 5665 778888999999999999999999999865443322 22233333223322233322222
Q ss_pred eeee----cC-eEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCC--cccccchhhhhhhhhhhhHHHHHHhhhc
Q 043686 153 WIEF----RN-KVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPD--FSLHYVDEERKWTQIGHSEILALSFGLI 225 (282)
Q Consensus 153 ~~~~----~~-~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~--t~~~~~~~~~~~~~~~~~~~l~~~~~~~ 225 (282)
..+. .. ..-.+...+...|+.++|. .++++-.+. .||.. .....+....-...+...+.+.. --
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~----~~L~~~l~~--~~~~~l~~l~~~l~~~~~~~al~~~e~~lk---~~ 324 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQ----QIILDGLKR--QYDERLVLLIPRLKTNNPEQLEKVLRQQIK---QH 324 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHH----HHHHHHHhc--CCCHHHHHHHhhccCCChHHHHHHHHHHHh---hC
Confidence 2221 11 1123445556677777776 444444442 33331 11111111000111112222111 11
Q ss_pred cCCCCCeEEEeeccccccchHHHHHHHHHhhcce
Q 043686 226 STQVGATIHVTKNLRMRHICHDFAKAISKMVEGE 259 (282)
Q Consensus 226 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~ 259 (282)
+..+...+.+-..+.+.+++..|.+.|++.....
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 1111111123444557788888888888776653
No 48
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.21 E-value=6.5e-05 Score=60.95 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHH-HHhcCC--hhHHHHHHHHHHhcCCCChhHHHHHHH
Q 043686 62 VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEG-CRIHVQ--VKTGKRVIDQLCELKPLSAENYIMLSN 136 (282)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~-~~~~g~--~~~A~~~~~~m~~~~p~~~~~~~~Li~ 136 (282)
...|..|...|...|++++|...|++.. ..|+ ...|..+-.+ |.+.|+ .++|.+++++..+.+|+++.++..|..
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~ 152 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLAS 152 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 4455555555555555555555555432 3332 4444444444 234444 255555555555555555555555555
Q ss_pred HHHHcCchhhhhc
Q 043686 137 WYAAEAKWDVVNQ 149 (282)
Q Consensus 137 ~y~~~g~~~~A~~ 149 (282)
.+.+.|++++|..
T Consensus 153 ~~~~~g~~~~Ai~ 165 (198)
T PRK10370 153 DAFMQADYAQAIE 165 (198)
T ss_pred HHHHcCCHHHHHH
Confidence 5555555555555
No 49
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.21 E-value=3.9e-05 Score=63.77 Aligned_cols=146 Identities=14% Similarity=-0.079 Sum_probs=106.0
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCH----HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChh----HHHHHHHHH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDP----LTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVT----HHALMVSVL 72 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~----~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~----~~~~li~~~ 72 (282)
..|.+.|++++|...|++... ..|+. .++..+-.++-+.|++++|...++ ....|+.. .+..+..++
T Consensus 41 ~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~ 117 (235)
T TIGR03302 41 KEALDSGDYTEAIKYFEALES---RYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSN 117 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHH
Confidence 457788999999999999876 33542 356667778889999999999999 44555422 344455555
Q ss_pred Hcc--------CChHHHHHHHHhcC-CCCC-HHHHH-----------------HHHHHHHhcCChhHHHHHHHHHHhcCC
Q 043686 73 ARA--------GLFDEARIFIQEYH-MERY-PEVLR-----------------ALLEGCRIHVQVKTGKRVIDQLCELKP 125 (282)
Q Consensus 73 ~~~--------g~~~~A~~l~~~m~-~~p~-~~~~~-----------------~li~~~~~~g~~~~A~~~~~~m~~~~p 125 (282)
.+. |+.++|.+.|++.. ..|+ ...+. .+...|.+.|++++|...+++.....|
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 197 (235)
T TIGR03302 118 YNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYP 197 (235)
T ss_pred HHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC
Confidence 544 78899999998864 3454 22221 344567888999999999999987655
Q ss_pred C---ChhHHHHHHHHHHHcCchhhhhccc
Q 043686 126 L---SAENYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 126 ~---~~~~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
+ .+..+..+...|.+.|+.++|...+
T Consensus 198 ~~~~~~~a~~~l~~~~~~lg~~~~A~~~~ 226 (235)
T TIGR03302 198 DTPATEEALARLVEAYLKLGLKDLAQDAA 226 (235)
T ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4 3467889999999999988886643
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.21 E-value=3.7e-05 Score=69.32 Aligned_cols=147 Identities=13% Similarity=0.089 Sum_probs=105.3
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCCCH-------HHHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHHHHH
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEIDP-------LTFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALMVSV 71 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~-------~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~li~~ 71 (282)
...|.+.|++++|.+++.++.+ .+..++. .+|..++..-....+.+...++++ ...+.+.....++...
T Consensus 194 ~~~~~~~gdw~~a~~~l~~l~k-~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~ 272 (398)
T PRK10747 194 EQAYIRTGAWSSLLDILPSMAK-AHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEH 272 (398)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHH
Confidence 4578889999999999999988 6654332 233444444444455566666666 3344467788888999
Q ss_pred HHccCChHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcc
Q 043686 72 LARAGLFDEARIFIQEYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQA 150 (282)
Q Consensus 72 ~~~~g~~~~A~~l~~~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~ 150 (282)
+.+.|+.++|.+++++.. ..||.. -.++.+....++.+++.+..+...+..|+|+..+.++...+.+.+++++|.+.
T Consensus 273 l~~~g~~~~A~~~L~~~l~~~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~ 350 (398)
T PRK10747 273 LIECDDHDTAQQIILDGLKRQYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLA 350 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999988743 344431 12344455668889999999988888998888888899999998888888554
Q ss_pred c
Q 043686 151 Y 151 (282)
Q Consensus 151 ~ 151 (282)
|
T Consensus 351 l 351 (398)
T PRK10747 351 F 351 (398)
T ss_pred H
Confidence 4
No 51
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.19 E-value=1e-05 Score=69.48 Aligned_cols=140 Identities=11% Similarity=0.036 Sum_probs=94.3
Q ss_pred ChHHHHHHHHHhHHhCCCCCCHHHHHHHH-HHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHHHhc
Q 043686 10 QRELGLSLFSELEKKSSIEIDPLTFAAVL-HACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEY 88 (282)
Q Consensus 10 ~~~~A~~lf~~m~~~~g~~p~~~ty~~ll-~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 88 (282)
+-+.++.-+++... ....++..++..+. ..+...|++++|.+++..+ .+.......|..|.+.+++|.|.+.++.|
T Consensus 81 ~~e~~l~~l~~~~~-~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 81 DKESALEELKELLA-DQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp THHCHHHHHHHCCC-TS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH-hccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555555443 33332333333333 3577789999999998855 45677778899999999999999999999
Q ss_pred C-CCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccc
Q 043686 89 H-MERYPEVL---RALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYS 152 (282)
Q Consensus 89 ~-~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~ 152 (282)
+ +..|.... .+.+..+.-.+.+.+|..+|+++....|.++.+.|.+.-++...|++++|++...
T Consensus 158 ~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~ 225 (290)
T PF04733_consen 158 QQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLE 225 (290)
T ss_dssp HCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8 66664433 3333333334579999999999886655577888889999999999999998443
No 52
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.19 E-value=1.7e-06 Score=48.89 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHhcC---CCCC
Q 043686 63 THHALMVSVLARAGLFDEARIFIQEYH---MERY 93 (282)
Q Consensus 63 ~~~~~li~~~~~~g~~~~A~~l~~~m~---~~p~ 93 (282)
++||+||.+|++.|++++|.++|++|. +.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 479999999999999999999999986 6676
No 53
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.18 E-value=7.4e-05 Score=72.78 Aligned_cols=150 Identities=14% Similarity=0.071 Sum_probs=109.6
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCC-CCHHHHHHHHHHHhcCCCHHHHHHHhh-----cc----CCCChhHHHHHHHH
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIE-IDPLTFAAVLHACSTAGMVEEGWLCFN-----RI----RSPKVTHHALMVSV 71 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~-p~~~ty~~ll~a~~~~g~~~~a~~l~~-----~g----~~p~~~~~~~li~~ 71 (282)
+-++.+.|+..++++.|+.|+. .|.. |+ .+--.+-++|...+.+++|..++. .+ ..++......|.-+
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~-~~~~~P~-y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA 376 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEA-EGYKMPD-YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS 376 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhh-cCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence 3467778888888888888887 7754 44 477788888888888888888888 11 12234445678888
Q ss_pred HHccCChHHHHHHHHhcC----------------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHH
Q 043686 72 LARAGLFDEARIFIQEYH----------------MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIML 134 (282)
Q Consensus 72 ~~~~g~~~~A~~l~~~m~----------------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~L 134 (282)
|...+++++|..+++++. ..|| ...+..++..+...|+..+|++.++++....|.|......+
T Consensus 377 ~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~ 456 (822)
T PRK14574 377 LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIAL 456 (822)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 888888888888887763 1123 34455566677888888888888888888888888888888
Q ss_pred HHHHHHcCchhhhhcccce
Q 043686 135 SNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 135 i~~y~~~g~~~~A~~~~~~ 153 (282)
.+.+...|...+|+..++.
T Consensus 457 A~v~~~Rg~p~~A~~~~k~ 475 (822)
T PRK14574 457 ASIYLARDLPRKAEQELKA 475 (822)
T ss_pred HHHHHhcCCHHHHHHHHHH
Confidence 8888888888888875433
No 54
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.18 E-value=6.5e-05 Score=60.93 Aligned_cols=127 Identities=11% Similarity=0.077 Sum_probs=97.9
Q ss_pred cCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHH-HHccCC--hHHH
Q 043686 8 HGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSV-LARAGL--FDEA 81 (282)
Q Consensus 8 ~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~-~~~~g~--~~~A 81 (282)
.++.++++..+++..+ . -..|...|..+-..+...|++++|...|+ ..+.| +...+..+..+ |...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~-~-~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR-A-NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH-H-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4556677777777555 2 23456677778788999999999999999 66677 47788888886 467777 5999
Q ss_pred HHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHH
Q 043686 82 RIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNW 137 (282)
Q Consensus 82 ~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~ 137 (282)
.+++++.. ..|+ ..++..+-..+.+.|++++|...|+++....|++..- ..+|..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r-~~~i~~ 186 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR-TQLVES 186 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH-HHHHHH
Confidence 99999965 6674 8889999999999999999999999999888777433 344443
No 55
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.15 E-value=2.9e-06 Score=47.79 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 95 EVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 95 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
.+||++|.+|++.|+++.|.++|++|+
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 467777777777777777777777776
No 56
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.14 E-value=0.00013 Score=60.12 Aligned_cols=151 Identities=13% Similarity=-0.039 Sum_probs=97.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHhh-ccCC--CChhHHHHHHHHHHccCChHHHHHHHHhcC--CCCCHHHHHHHH
Q 043686 27 IEIDPLTFAAVLHACSTAGMVEEGWLCFN-RIRS--PKVTHHALMVSVLARAGLFDEARIFIQEYH--MERYPEVLRALL 101 (282)
Q Consensus 27 ~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-~g~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~--~~p~~~~~~~li 101 (282)
..|+...-..+-+++--.|+-+....+.. ..+. .|...-+..+....+.|++..|...|.+.. -.||..+||-+-
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence 44544333444445666676666666665 2222 234455567777788888888888887754 244577888888
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccccee----eecCeE-EEEecCCCCCCChHHH
Q 043686 102 EGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWI----EFRNKV-HVFGTGDVSCPRSEGI 176 (282)
Q Consensus 102 ~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~----~~~~~~-~~~i~~~~~~~~~~~a 176 (282)
-+|.+.|++++|...|.+..++.|.++...|.|.-.|.-.|++++|...+..- .....+ +.+.-.....|++++|
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 88888888888888888888887777777777777777788888887733321 112222 3333334566777666
Q ss_pred H
Q 043686 177 F 177 (282)
Q Consensus 177 ~ 177 (282)
.
T Consensus 222 ~ 222 (257)
T COG5010 222 E 222 (257)
T ss_pred H
Confidence 5
No 57
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.13 E-value=2.3e-06 Score=47.04 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 96 VLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 96 ~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
|||+||++|++.|++++|.++|++|.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHh
Confidence 56666666666666666666666665
No 58
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.13 E-value=0.00014 Score=70.89 Aligned_cols=150 Identities=11% Similarity=0.028 Sum_probs=124.4
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCC----CCCCHHHHHHHHHHHhcCCCHHHHHHHhh--c---------------cCCC
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSS----IEIDPLTFAAVLHACSTAGMVEEGWLCFN--R---------------IRSP 60 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g----~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~---------------g~~p 60 (282)
-++|...+++++|+.+|++.....+ ..++......|.-++...+++++|..+++ . ...|
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 3678899999999999999865122 23344556889999999999999999999 1 1223
Q ss_pred Ch-hHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHH
Q 043686 61 KV-THHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNW 137 (282)
Q Consensus 61 ~~-~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~ 137 (282)
|- ..+..++..+...|+..+|++.++++. ..| |...+..+-+.+...|+..+|++.++....+.|++..+...+...
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET 493 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence 32 234567888999999999999999986 556 588999999999999999999999988889999998999999999
Q ss_pred HHHcCchhhhhccc
Q 043686 138 YAAEAKWDVVNQAY 151 (282)
Q Consensus 138 y~~~g~~~~A~~~~ 151 (282)
+-..|++.+|..+.
T Consensus 494 al~l~e~~~A~~~~ 507 (822)
T PRK14574 494 AMALQEWHQMELLT 507 (822)
T ss_pred HHhhhhHHHHHHHH
Confidence 99999999997754
No 59
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.12 E-value=6.9e-05 Score=71.64 Aligned_cols=121 Identities=15% Similarity=0.099 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHH
Q 043686 29 IDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEG 103 (282)
Q Consensus 29 p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~ 103 (282)
.++..+--|-.+..+.|+.++|..+++ ..+.|| ......+...+.+.+++++|...+++.- ..|+ ....+.+-.+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 345555555556666666666666666 556665 3445566666666666666666666643 4555 4455555556
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 104 CRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 104 ~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
+.+.|+.++|.++|++.....|++..++..+-..+-+.|+.++|..
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~ 209 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARD 209 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666666666666656666666666666666666665
No 60
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.11 E-value=9.5e-07 Score=83.14 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=46.3
Q ss_pred ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC---------------------------CCCCHHHHHHHHHHHHhcC
Q 043686 56 RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH---------------------------MERYPEVLRALLEGCRIHV 108 (282)
Q Consensus 56 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~---------------------------~~p~~~~~~~li~~~~~~g 108 (282)
.|+.||.+||..+|.-||..|+++.|- +|.-|+ -.|...||+.|..+|.++|
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hG 97 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHG 97 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhcc
Confidence 799999999999999999999999998 776653 1345678888888888888
Q ss_pred ChhH
Q 043686 109 QVKT 112 (282)
Q Consensus 109 ~~~~ 112 (282)
++.-
T Consensus 98 Dli~ 101 (1088)
T KOG4318|consen 98 DLIL 101 (1088)
T ss_pred chHH
Confidence 7654
No 61
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=9.9e-05 Score=65.39 Aligned_cols=145 Identities=13% Similarity=0.099 Sum_probs=124.3
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCHHH-HHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHH
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDPLT-FAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDE 80 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~t-y~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~ 80 (282)
|+-.++.++|+..|++-.+ +-|.... |+-+-.-|....+...|.+-++ ..+.| |-..|-.|..+|.-.+...-
T Consensus 340 YSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~Y 416 (559)
T KOG1155|consen 340 YSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFY 416 (559)
T ss_pred HHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHH
Confidence 5667889999999999887 5576654 4445558999999999999999 56666 77899999999999999999
Q ss_pred HHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccc
Q 043686 81 ARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYS 152 (282)
Q Consensus 81 A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~ 152 (282)
|.-.|++.. +.|+ ...|.+|-.+|.+.++.++|.+.|+......-.+...+.-|.+.|-+-++..+|...+.
T Consensus 417 aLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~ye 490 (559)
T KOG1155|consen 417 ALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYE 490 (559)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999976 7775 99999999999999999999999999986654455899999999999999999987443
No 62
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.10 E-value=5.9e-05 Score=64.79 Aligned_cols=51 Identities=12% Similarity=0.125 Sum_probs=24.2
Q ss_pred HHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 043686 72 LARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKP 125 (282)
Q Consensus 72 ~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p 125 (282)
|...|++++|.+++++- .+.......+..|.+.+|++.|.+.++.|.+...
T Consensus 112 ~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e 162 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE 162 (290)
T ss_dssp HCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC
T ss_pred HHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 44445555555554432 2333444445555555555555555555554444
No 63
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.07 E-value=3.7e-06 Score=46.19 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHhcC
Q 043686 63 THHALMVSVLARAGLFDEARIFIQEYH 89 (282)
Q Consensus 63 ~~~~~li~~~~~~g~~~~A~~l~~~m~ 89 (282)
+|||+||++|++.|++++|.++|++|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHh
Confidence 589999999999999999999999997
No 64
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.06 E-value=3e-05 Score=65.72 Aligned_cols=117 Identities=18% Similarity=0.192 Sum_probs=87.7
Q ss_pred hhcCChHHHHHHHHHhHHhCCCCCCHH-HHHHHHHHHhcCCCHHHHHHHhh-ccCCCCh------hHHHHHHHHHHccCC
Q 043686 6 SLHGQRELGLSLFSELEKKSSIEIDPL-TFAAVLHACSTAGMVEEGWLCFN-RIRSPKV------THHALMVSVLARAGL 77 (282)
Q Consensus 6 ~~~g~~~~A~~lf~~m~~~~g~~p~~~-ty~~ll~a~~~~g~~~~a~~l~~-~g~~p~~------~~~~~li~~~~~~g~ 77 (282)
--+.+.++|.++|-+|.+ ..|..+ +--+|-+-|-+.|.+|.|++++. .--+||. ...--|-.-|-++|-
T Consensus 46 LLs~Q~dKAvdlF~e~l~---~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQ---EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred HhhcCcchHHHHHHHHHh---cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhh
Confidence 346789999999999987 334333 33456667778899999999999 4455653 223345566889999
Q ss_pred hHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 043686 78 FDEARIFIQEYHMERY--PEVLRALLEGCRIHVQVKTGKRVIDQLCELKP 125 (282)
Q Consensus 78 ~~~A~~l~~~m~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p 125 (282)
+|.|+++|....-.|. ...--.|+.-|-+..+|++|.++-++...+.|
T Consensus 123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG 172 (389)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 9999999999762344 45667788889999999999988888876665
No 65
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.04 E-value=0.00017 Score=54.30 Aligned_cols=109 Identities=11% Similarity=0.027 Sum_probs=84.2
Q ss_pred HHHHhHHhCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CC
Q 043686 17 LFSELEKKSSIEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-ME 91 (282)
Q Consensus 17 lf~~m~~~~g~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~ 91 (282)
+|++... ..|+. .....+...+.+.|+.++|.+.|+ ....| +...+..+...|.+.|++++|...|+... ..
T Consensus 5 ~~~~~l~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG---LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc---CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4555444 45544 345556667788899999999998 34445 57788889999999999999999998853 44
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh
Q 043686 92 R-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSA 128 (282)
Q Consensus 92 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~ 128 (282)
| +..+|..+-..|...|++++|...|+...+..|++.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 5 477888888899999999999999999999988763
No 66
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.01 E-value=0.0001 Score=65.72 Aligned_cols=121 Identities=18% Similarity=0.130 Sum_probs=101.2
Q ss_pred HHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCh
Q 043686 35 AAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQV 110 (282)
Q Consensus 35 ~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~ 110 (282)
.+|+..+...+++++|..+|+ ..-.|++ ...|...|-..++-.+|.+++++.- -.| |....+.....|.+.++.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 456677777899999999999 4445654 4457888888888899999998853 344 577777777889999999
Q ss_pred hHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeec
Q 043686 111 KTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFR 157 (282)
Q Consensus 111 ~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~ 157 (282)
+.|+++.+++..+.|++..+|..|...|.+.|+++.|....+.+|..
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 99999999999999999899999999999999999999988777653
No 67
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.00 E-value=3e-05 Score=70.10 Aligned_cols=200 Identities=6% Similarity=-0.150 Sum_probs=108.1
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh----ccCCCChhHH--------HHHHHH
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN----RIRSPKVTHH--------ALMVSV 71 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~----~g~~p~~~~~--------~~li~~ 71 (282)
+.+.|+++.|...++++.+ . .| +......+...+...|+.++|.+++. .+.. +...+ ..+++.
T Consensus 163 ~l~~~~~~~Al~~l~~l~~-~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLE-M--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHCCCHHHHHHHHHHHHH-h--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888877 3 35 44466777778888888888888887 3222 22222 111211
Q ss_pred HHccCChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH--cCchhhh
Q 043686 72 LARAGLFDEARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAA--EAKWDVV 147 (282)
Q Consensus 72 ~~~~g~~~~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~--~g~~~~A 147 (282)
-......+...+.++..+ .+.+...+..+...+...|+.++|.+++++..+..|++......++..+.. .++.+.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHH
Confidence 112222333344444443 123667777777777777888888877777777777553211113333332 3444444
Q ss_pred hcccce----eeecC--eE-EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhhhhh
Q 043686 148 NQAYSW----IEFRN--KV-HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQI 212 (282)
Q Consensus 148 ~~~~~~----~~~~~--~~-~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~~ 212 (282)
.+.++. -|... .+ .++-.-+.+.|++++|. +.|+.-......||...+.++..-+.+.+.-
T Consensus 319 ~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~----~~le~a~a~~~~p~~~~~~~La~ll~~~g~~ 386 (409)
T TIGR00540 319 EKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAA----DAFKNVAACKEQLDANDLAMAADAFDQAGDK 386 (409)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHH----HHHHHhHHhhcCCCHHHHHHHHHHHHHcCCH
Confidence 442221 11111 11 12222345667777776 6666434444567776665555544444443
No 68
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.00 E-value=7.3e-05 Score=57.49 Aligned_cols=123 Identities=9% Similarity=-0.007 Sum_probs=94.2
Q ss_pred cCC-CC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHH
Q 043686 57 IRS-PK-VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYI 132 (282)
Q Consensus 57 g~~-p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ 132 (282)
++. ++ ....-++-.-+...|++++|+++|+-.- +.|. ..-|-.|-.+|-..|++++|...|.....+.|+++.++-
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 444 43 4455566777788999999999999865 6776 667888999999999999999999999999999999999
Q ss_pred HHHHHHHHcCchhhhhcccceeeecCeEEEEecCCCCCCChHHHHHHHHHHHHHHH
Q 043686 133 MLSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKME 188 (282)
Q Consensus 133 ~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~ 188 (282)
.+-..|.+.|+.+.|.+.|... |.-+..+++..+..+.++..++.+.
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~A---------i~~~~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAV---------VRICGEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH---------HHHhccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999999977653 1112233444454555556665554
No 69
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=8.4e-06 Score=45.82 Aligned_cols=28 Identities=25% Similarity=0.231 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHhcC
Q 043686 62 VTHHALMVSVLARAGLFDEARIFIQEYH 89 (282)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~ 89 (282)
+.+|+++|++|++.|+++.|.++|++|.
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3688889999999999999999998886
No 70
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.93 E-value=0.0004 Score=61.32 Aligned_cols=146 Identities=14% Similarity=0.148 Sum_probs=73.7
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCH-HHHHH---HHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCC
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDP-LTFAA---VLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGL 77 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~-~ty~~---ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~ 77 (282)
+...|++++|.+++++..+ . .|+. ..+.. ........|..+.+.+.+. ....|+ ......+...+...|+
T Consensus 53 ~~~~g~~~~A~~~~~~~l~-~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 53 AWIAGDLPKALALLEQLLD-D--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHcCCHHHHHHHHHHHHH-H--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC
Confidence 3455666666666666554 2 2332 22221 1111112344444444444 223333 2233344455666666
Q ss_pred hHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHcCchhhhhccc
Q 043686 78 FDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSA----ENYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 78 ~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~----~~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
+++|.+.+++.- ..|+ ...+..+-..|...|++++|...+++.....|.++ ..|..+...|...|+.++|...+
T Consensus 130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 666666666643 3343 45556666666666666666666666665443211 12335566666666666666644
Q ss_pred ce
Q 043686 152 SW 153 (282)
Q Consensus 152 ~~ 153 (282)
+.
T Consensus 210 ~~ 211 (355)
T cd05804 210 DT 211 (355)
T ss_pred HH
Confidence 44
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.92 E-value=0.00019 Score=65.88 Aligned_cols=147 Identities=11% Similarity=0.099 Sum_probs=111.6
Q ss_pred hhhhhcCChHHHHHHHHHhHH----hCC-CCCCHH-HHHHHHHHHhcCCCHHHHHHHhh-------ccCCC---C-hhHH
Q 043686 3 LGYSLHGQRELGLSLFSELEK----KSS-IEIDPL-TFAAVLHACSTAGMVEEGWLCFN-------RIRSP---K-VTHH 65 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~----~~g-~~p~~~-ty~~ll~a~~~~g~~~~a~~l~~-------~g~~p---~-~~~~ 65 (282)
..|.+.|++++|...+++..+ ..| ..|.+. -++.+...|+..+.+++|..++. .-+.+ + ..+|
T Consensus 291 ~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~ 370 (508)
T KOG1840|consen 291 VLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIY 370 (508)
T ss_pred HHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 368899999998888877432 022 234444 35556667888999999999998 11222 2 4589
Q ss_pred HHHHHHHHccCChHHHHHHHHhcC---------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH----hcCC---CCh
Q 043686 66 ALMVSVLARAGLFDEARIFIQEYH---------MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLC----ELKP---LSA 128 (282)
Q Consensus 66 ~~li~~~~~~g~~~~A~~l~~~m~---------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~p---~~~ 128 (282)
+.|-..|-+.|++++|+++|++.. ..+. -...|.|-..|.+.++.++|.++|.+.. .+.| +..
T Consensus 371 ~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~ 450 (508)
T KOG1840|consen 371 ANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVT 450 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchH
Confidence 999999999999999999998842 2333 4567889999999999999999999876 3444 445
Q ss_pred hHHHHHHHHHHHcCchhhhhc
Q 043686 129 ENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 129 ~~~~~Li~~y~~~g~~~~A~~ 149 (282)
.+|..|...|-..|++++|..
T Consensus 451 ~~~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 451 YTYLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred HHHHHHHHHHHHcccHHHHHH
Confidence 778899999999999999865
No 72
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.00043 Score=61.39 Aligned_cols=135 Identities=9% Similarity=0.111 Sum_probs=102.1
Q ss_pred hcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHHHHHHHccCChHHHHH
Q 043686 7 LHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALMVSVLARAGLFDEARI 83 (282)
Q Consensus 7 ~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~ 83 (282)
.-.+...|++++.+... -++.|+...+-|-..|-+.|+-.+|.+.+- +-++.|..|...|-.-|....-+++|..
T Consensus 570 ~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~ 647 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAIN 647 (840)
T ss_pred HhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHH
Confidence 33455566666655432 233355677777788888888888888776 4444577888888888888888889999
Q ss_pred HHHhcC-CCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCc
Q 043686 84 FIQEYH-MERYPEVLRALLEG-CRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAK 143 (282)
Q Consensus 84 l~~~m~-~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~ 143 (282)
.|++.. ++|++.-|-.||.. +-+.|++.+|.++|+..-.--|.+....-.|++..+..|.
T Consensus 648 y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 648 YFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 998865 78999999888875 4566999999999999888888888888888888777664
No 73
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=8.4e-05 Score=66.25 Aligned_cols=144 Identities=13% Similarity=0.076 Sum_probs=120.6
Q ss_pred hhcCChHHHHHHHHHhHHhCCCCCCHHH-HHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHH
Q 043686 6 SLHGQRELGLSLFSELEKKSSIEIDPLT-FAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEA 81 (282)
Q Consensus 6 ~~~g~~~~A~~lf~~m~~~~g~~p~~~t-y~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A 81 (282)
.-.|+..+|...|+.... . .|.... |--+-.+|....+.++.+..|. ..+.| |..+|-.-...+.-.+++++|
T Consensus 337 fL~g~~~~a~~d~~~~I~-l--~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIK-L--DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhcCCchhhhhhHHHHHh-c--CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHH
Confidence 346888999999999887 3 343333 7777778999999999999999 77777 577888888888888899999
Q ss_pred HHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccc
Q 043686 82 RIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYS 152 (282)
Q Consensus 82 ~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~ 152 (282)
..=|++.. +.|. +..|--+--+..|.+++++++..|++.++--|.-+..|+.....+...+++++|.+.++
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 99999866 6775 77777777778888999999999999998888888999999999999999999988544
No 74
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.88 E-value=0.00013 Score=49.98 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=57.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 043686 65 HALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEA 142 (282)
Q Consensus 65 ~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g 142 (282)
+..+...+.+.|++++|.+.|++.. ..|+ ..++..+...+...|++++|.+.|+......|.+..++..+...|...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4455666667777777777777643 3343 4566667777777777777777777777666666556667777777777
Q ss_pred chhhhhcc
Q 043686 143 KWDVVNQA 150 (282)
Q Consensus 143 ~~~~A~~~ 150 (282)
+.++|...
T Consensus 83 ~~~~a~~~ 90 (100)
T cd00189 83 KYEEALEA 90 (100)
T ss_pred hHHHHHHH
Confidence 76666543
No 75
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.88 E-value=0.00075 Score=58.79 Aligned_cols=146 Identities=18% Similarity=0.173 Sum_probs=114.6
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCCCH-------HHHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHHHHH
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEIDP-------LTFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALMVSV 71 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~-------~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~li~~ 71 (282)
..+|.+.|++.....+...|.+ .|+--|+ .+|..+++=....+..+.-...|+ ...+-+...-.+++.-
T Consensus 194 ~r~y~~~g~~~~ll~~l~~L~k-a~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~ 272 (400)
T COG3071 194 LRAYIRLGAWQALLAILPKLRK-AGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAER 272 (400)
T ss_pred HHHHHHhccHHHHHHHHHHHHH-ccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHH
Confidence 4679999999999999999999 8876665 478899998888888888777887 5566667777888999
Q ss_pred HHccCChHHHHHHHHhc-C--CC-----------------------------C-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 043686 72 LARAGLFDEARIFIQEY-H--ME-----------------------------R-YPEVLRALLEGCRIHVQVKTGKRVID 118 (282)
Q Consensus 72 ~~~~g~~~~A~~l~~~m-~--~~-----------------------------p-~~~~~~~li~~~~~~g~~~~A~~~~~ 118 (282)
+.++|+.++|.++..+- + .. | +...+.+|-.-|.+++.|.+|...|+
T Consensus 273 li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred HHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999987652 1 11 2 23457777777888888888888888
Q ss_pred HHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 119 QLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 119 ~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
......| +..+|+-+.+.|.+.|+..+|..
T Consensus 353 aAl~~~~-s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 353 AALKLRP-SASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred HHHhcCC-ChhhHHHHHHHHHHcCChHHHHH
Confidence 7777777 44788888888888888777754
No 76
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.87 E-value=0.00041 Score=57.24 Aligned_cols=145 Identities=14% Similarity=0.107 Sum_probs=100.0
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHHHHHHHccCChHHH
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALMVSVLARAGLFDEA 81 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~li~~~~~~g~~~~A 81 (282)
+-..|+-+.+..+...... .-.-|....+...+...+.|++.+|...|. ..-+||...|+.+--+|-+.|++++|
T Consensus 76 ~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~A 153 (257)
T COG5010 76 LYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEA 153 (257)
T ss_pred HHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHH
Confidence 3344555555555555332 122233344557777778888888888887 44445678888888888888888888
Q ss_pred HHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686 82 RIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 82 ~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
..-|.+.. +.|+ ....|.|.-.|.-.|+.+.|..++.......|.+...-..|.-..+..|++++|+.+-
T Consensus 154 r~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 154 RRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 88887743 4454 6677777777888888888888888877666656567777777888888888887644
No 77
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.87 E-value=8.6e-05 Score=69.04 Aligned_cols=185 Identities=15% Similarity=0.099 Sum_probs=131.4
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-ccCCCChhHHHHHHHHHHccCChHH
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-RIRSPKVTHHALMVSVLARAGLFDE 80 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-~g~~p~~~~~~~li~~~~~~g~~~~ 80 (282)
|-+|+..|+..+|..+..+-.+ =.||+.-|..+.+..-+..-+++|.++++ .... .--.+-....+.+++++
T Consensus 431 i~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar----A~r~~~~~~~~~~~fs~ 503 (777)
T KOG1128|consen 431 ILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR----AQRSLALLILSNKDFSE 503 (777)
T ss_pred HHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH----HHHhhccccccchhHHH
Confidence 5678888888888887777554 45788888888888888888888888887 1111 11111112233688999
Q ss_pred HHHHHHh-cCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecC
Q 043686 81 ARIFIQE-YHMERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRN 158 (282)
Q Consensus 81 A~~l~~~-m~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~ 158 (282)
+.+.|+. +.+.|- ..+|-.+-.+.-+.++++.|.+.|..-..++|++..+||.|-.+|.+.|+-.+|...+..--..+
T Consensus 504 ~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 504 ADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999987 445554 67999999999999999999999999999999999999999999999999999988433322111
Q ss_pred ----eE-EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCcc
Q 043686 159 ----KV-HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRP 194 (282)
Q Consensus 159 ----~~-~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~p 194 (282)
.+ -.++.-..+.|.+++|+....++. .|++.+-.|
T Consensus 584 ~~~w~iWENymlvsvdvge~eda~~A~~rll-~~~~~~~d~ 623 (777)
T KOG1128|consen 584 YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL-DLRKKYKDD 623 (777)
T ss_pred CCCCeeeechhhhhhhcccHHHHHHHHHHHH-Hhhhhcccc
Confidence 11 223333467888999985554443 344444433
No 78
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.87 E-value=0.00015 Score=54.65 Aligned_cols=97 Identities=13% Similarity=0.115 Sum_probs=82.2
Q ss_pred cCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHH
Q 043686 57 IRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIM 133 (282)
Q Consensus 57 g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~ 133 (282)
...|+ ......+...+.+.|+.++|.+.|+... ..| +...|..+...|.+.|++++|...++...+..|+++.++..
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 45564 4556778888999999999999999864 455 57889999999999999999999999999999988899999
Q ss_pred HHHHHHHcCchhhhhcccce
Q 043686 134 LSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 134 Li~~y~~~g~~~~A~~~~~~ 153 (282)
+...|...|+.++|...+..
T Consensus 91 la~~~~~~g~~~~A~~~~~~ 110 (135)
T TIGR02552 91 AAECLLALGEPESALKALDL 110 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 99999999999988765543
No 79
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.85 E-value=0.00046 Score=50.37 Aligned_cols=101 Identities=15% Similarity=0.099 Sum_probs=75.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhh--ccCCCC----hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHHH
Q 043686 33 TFAAVLHACSTAGMVEEGWLCFN--RIRSPK----VTHHALMVSVLARAGLFDEARIFIQEYH-MERY----PEVLRALL 101 (282)
Q Consensus 33 ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~li 101 (282)
++-.+...+.+.|+.++|.+.|. ....|+ ...+..+...|.+.|+++.|.+.|+... ..|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 45556666777888888888887 222333 2456668888999999999999998864 3344 45678888
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCChhHHHH
Q 043686 102 EGCRIHVQVKTGKRVIDQLCELKPLSAENYIM 133 (282)
Q Consensus 102 ~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~ 133 (282)
..+.+.|+.++|.+.++++....|++..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 88999999999999999999888877555544
No 80
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.85 E-value=0.00049 Score=65.95 Aligned_cols=126 Identities=10% Similarity=0.044 Sum_probs=106.2
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCHH-HHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDPL-TFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFD 79 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~-ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~ 79 (282)
...+.|++++|+.+++...+ +.||.. ....+..++.+.+++++|....+ ....|+ ....+.+-.++.+.|+.+
T Consensus 95 i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSE 171 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchH
Confidence 45678999999999999988 889887 45567778999999999999999 667775 667788999999999999
Q ss_pred HHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHH
Q 043686 80 EARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYI 132 (282)
Q Consensus 80 ~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ 132 (282)
+|.++|++.- ..|| ..+|.++-..+.+.|+.++|...|+.......+.+..|+
T Consensus 172 ~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 172 QADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 9999999965 4666 789999999999999999999999999854433445554
No 81
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.85 E-value=0.00022 Score=63.63 Aligned_cols=115 Identities=10% Similarity=0.001 Sum_probs=93.9
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHHHHHHHccCCh
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALMVSVLARAGLF 78 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~li~~~~~~g~~ 78 (282)
+..+...++++.|+.+|+++.+ .. |+. ...+...+...++-.+|.++.. ...+-|......-.+.+.+.++.
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~-~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRE-RD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHh-cC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 4556778899999999999988 43 664 4457777777888899999998 33333566666677788999999
Q ss_pred HHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 79 DEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 79 ~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
+.|.++.+++. ..|+ ..+|..|..+|.+.|++++|+..+..+.
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999976 7887 6699999999999999999999988765
No 82
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.84 E-value=0.00022 Score=63.62 Aligned_cols=126 Identities=17% Similarity=0.089 Sum_probs=104.0
Q ss_pred cCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHH
Q 043686 43 TAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVI 117 (282)
Q Consensus 43 ~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 117 (282)
..|..++|...+. ..-.|| ..-.....+.+.+.++..+|.+.++++. ..|+ ...+-++-.+|.+.|+..+|.+++
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L 397 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRIL 397 (484)
T ss_pred HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHH
Confidence 4566777777777 666676 4455688899999999999999999976 6788 667777889999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecCeEEEEecCCCCCCChHHHHHHH
Q 043686 118 DQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFWEL 180 (282)
Q Consensus 118 ~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~ 180 (282)
+.-..-.|+++..|..|..+|...|+..+|...... ++...|.++.|+..+
T Consensus 398 ~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------~~~~~G~~~~A~~~l 448 (484)
T COG4783 398 NRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE------------GYALAGRLEQAIIFL 448 (484)
T ss_pred HHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH------------HHHhCCCHHHHHHHH
Confidence 999999999999999999999999999998765433 256678888887333
No 83
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.74 E-value=0.00033 Score=47.82 Aligned_cols=92 Identities=11% Similarity=0.063 Sum_probs=67.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcC
Q 043686 34 FAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHV 108 (282)
Q Consensus 34 y~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g 108 (282)
+..+...+...|++++|...++ ....|+ ...+..+...|...|++++|.+.|+... ..| +..+|..+...+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 3445555666777888887777 333443 4667778888888888999999888743 334 4567888888888999
Q ss_pred ChhHHHHHHHHHHhcCC
Q 043686 109 QVKTGKRVIDQLCELKP 125 (282)
Q Consensus 109 ~~~~A~~~~~~m~~~~p 125 (282)
+.++|...+.+.....|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 99999998888876666
No 84
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.69 E-value=0.00051 Score=68.16 Aligned_cols=191 Identities=10% Similarity=-0.004 Sum_probs=144.6
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCCCH---HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccC
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEIDP---LTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAG 76 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~---~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g 76 (282)
|+-..+.++.++|++++++...+-+++-.. -.|.++++.-..-|.-+...++|+ .-..--..+|..|...|.+.+
T Consensus 1465 Maf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~e 1544 (1710)
T KOG1070|consen 1465 MAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSE 1544 (1710)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhh
Confidence 344567788999999999976522222221 357777777777778888999999 222223568899999999999
Q ss_pred ChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCchhhhhcccc
Q 043686 77 LFDEARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPL--SAENYIMLSNWYAAEAKWDVVNQAYS 152 (282)
Q Consensus 77 ~~~~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~--~~~~~~~Li~~y~~~g~~~~A~~~~~ 152 (282)
++++|-++|+.|- +.-...+|...+..+.+..+-+.|.+++.++.++-|. ++..-.-.+.+-.+.|+-+++..+|+
T Consensus 1545 k~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfE 1624 (1710)
T KOG1070|consen 1545 KNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFE 1624 (1710)
T ss_pred cchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHH
Confidence 9999999999996 6655789999999999999999999999999988885 44444556666678899888776554
Q ss_pred e----eeecC-eEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCC
Q 043686 153 W----IEFRN-KVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKP 196 (282)
Q Consensus 153 ~----~~~~~-~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~ 196 (282)
. .|.+. ..+.++..-.+++..+.+. .||++....++.|-.
T Consensus 1625 gll~ayPKRtDlW~VYid~eik~~~~~~vR----~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1625 GLLSAYPKRTDLWSVYIDMEIKHGDIKYVR----DLFERVIELKLSIKK 1669 (1710)
T ss_pred HHHhhCccchhHHHHHHHHHHccCCHHHHH----HHHHHHHhcCCChhH
Confidence 4 33333 3377888778888887776 999999999987765
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.68 E-value=0.001 Score=54.05 Aligned_cols=90 Identities=7% Similarity=-0.018 Sum_probs=72.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 043686 64 HHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAE 141 (282)
Q Consensus 64 ~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~ 141 (282)
+..-|--+|-..|+...|.+-+++.. +.|+ ..+|..+-..|-+.|..+.|.+.|++...+.|++-...|..--.+|..
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 45567778889999999999988854 7777 668888888899999999999999999899998878888888888888
Q ss_pred Cchhhhhcccce
Q 043686 142 AKWDVVNQAYSW 153 (282)
Q Consensus 142 g~~~~A~~~~~~ 153 (282)
|++++|..-|+.
T Consensus 117 g~~~eA~q~F~~ 128 (250)
T COG3063 117 GRPEEAMQQFER 128 (250)
T ss_pred CChHHHHHHHHH
Confidence 887777664443
No 86
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.66 E-value=0.00047 Score=58.82 Aligned_cols=142 Identities=11% Similarity=0.007 Sum_probs=111.6
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHH-HHHHHHHccCChH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHA-LMVSVLARAGLFD 79 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~-~li~~~~~~g~~~ 79 (282)
.+|.+-|.+.+|.+.|+.-.. -.|-+.||--|-++|.+...++.|..++. ....|-.+||- -+-..+-..++.+
T Consensus 231 kCylrLgm~r~AekqlqssL~---q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~ 307 (478)
T KOG1129|consen 231 KCYLRLGMPRRAEKQLQSSLT---QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQE 307 (478)
T ss_pred HHHHHhcChhhhHHHHHHHhh---cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHH
Confidence 478888999999999988665 35777789889999999999999999998 44556555553 5666777788999
Q ss_pred HHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhh
Q 043686 80 EARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVV 147 (282)
Q Consensus 80 ~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A 147 (282)
+|.++++..- ..| |+.+...+-.+|.-.++.|-|++.|+.+.++...++..|+.+--.|.-++.+|-+
T Consensus 308 ~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 308 DALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence 9999998853 344 5777888888898999999999999999877665668888777666666666655
No 87
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.64 E-value=0.00027 Score=46.07 Aligned_cols=60 Identities=18% Similarity=0.134 Sum_probs=50.7
Q ss_pred HHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686 68 MVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS 127 (282)
Q Consensus 68 li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~ 127 (282)
+...+.+.|++++|.+.|++.. ..|+ ...|..+-..+.+.|++++|...|+++.+..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4567888999999999999965 5675 7889999999999999999999999999999976
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.62 E-value=0.001 Score=61.64 Aligned_cols=172 Identities=12% Similarity=0.013 Sum_probs=116.2
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHh-cC-----CCHHHHHHHhh---------------------
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACS-TA-----GMVEEGWLCFN--------------------- 55 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~-~~-----g~~~~a~~l~~--------------------- 55 (282)
..|.+.|+.++|..+|..+.+ .+ |+...|-..+..+. -. ...+.-.++++
T Consensus 46 ~ll~kLg~~~eA~~~y~~Li~-rN--Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~ 122 (517)
T PF12569_consen 46 ELLLKLGRKEEAEKIYRELID-RN--PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLE 122 (517)
T ss_pred HHHHHcCCHHHHHHHHHHHHH-HC--CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCC
Confidence 357788999999999999987 43 66665555444433 21 24555555555
Q ss_pred -----------------ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC--------C---------CCCHHHH--HH
Q 043686 56 -----------------RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH--------M---------ERYPEVL--RA 99 (282)
Q Consensus 56 -----------------~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~--------~---------~p~~~~~--~~ 99 (282)
.|++ .+|+.|-..|....+.+-..+++.+.. + .|....| .-
T Consensus 123 g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~ 199 (517)
T PF12569_consen 123 GDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYF 199 (517)
T ss_pred HHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHH
Confidence 3332 256666666666666666666666531 1 2444344 55
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecCeE----E-EEecCCCCCCChH
Q 043686 100 LLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKV----H-VFGTGDVSCPRSE 174 (282)
Q Consensus 100 li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~----~-~~i~~~~~~~~~~ 174 (282)
|-..|...|+.++|++.+++..+..|..+..|..-.+.|-..|++.+|.+..+.-..-+.. | -...-+-++|+.+
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e 279 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIE 279 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHH
Confidence 5667899999999999999999999988999999999999999999998855443322222 1 1222235688899
Q ss_pred HHHHHH
Q 043686 175 GIFWEL 180 (282)
Q Consensus 175 ~a~~~~ 180 (282)
+|...+
T Consensus 280 ~A~~~~ 285 (517)
T PF12569_consen 280 EAEKTA 285 (517)
T ss_pred HHHHHH
Confidence 987433
No 89
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.60 E-value=0.0019 Score=51.07 Aligned_cols=109 Identities=15% Similarity=0.142 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC----hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHH
Q 043686 32 LTFAAVLHACSTAGMVEEGWLCFN--RIRSPK----VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEG 103 (282)
Q Consensus 32 ~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~ 103 (282)
..|..+-..+...|++++|...|+ ....|+ ...+..+...|.+.|++++|.+.+++.. ..|+ ...+..+...
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 356666777888999999999998 333343 3578889999999999999999998854 5564 6677777778
Q ss_pred HHhcCC--------------hhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCc
Q 043686 104 CRIHVQ--------------VKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAK 143 (282)
Q Consensus 104 ~~~~g~--------------~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~ 143 (282)
|...|+ +++|.+++++..+..|++ |..++..+...|+
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 888776 466777777777788844 7777777777765
No 90
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.60 E-value=0.001 Score=59.01 Aligned_cols=96 Identities=11% Similarity=0.022 Sum_probs=62.7
Q ss_pred HhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHH
Q 043686 41 CSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKR 115 (282)
Q Consensus 41 ~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~ 115 (282)
+...|++++|.+.|+ ....| +...|..+..+|.+.|++++|...+++.. +.|+ ...|..+..+|.+.|++++|..
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 444566666666666 33444 34566666677777777777777777654 4554 6667777777777777777777
Q ss_pred HHHHHHhcCCCChhHHHHHHH
Q 043686 116 VIDQLCELKPLSAENYIMLSN 136 (282)
Q Consensus 116 ~~~~m~~~~p~~~~~~~~Li~ 136 (282)
.|++..++.|++......+-.
T Consensus 92 ~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 92 ALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHhCCCCHHHHHHHHH
Confidence 777777777766554444433
No 91
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.59 E-value=0.00012 Score=62.35 Aligned_cols=216 Identities=12% Similarity=-0.009 Sum_probs=118.2
Q ss_pred HHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhH
Q 043686 37 VLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKT 112 (282)
Q Consensus 37 ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~ 112 (282)
+-+.|.+.|.+.+|...|+ ..-.|-+.||--|-..|.+..+.+.|..+|.+-. .-|- +.....+...+-..++.++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~ 308 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQED 308 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHH
Confidence 5556777777777777777 4455666677777777777777777777777633 3443 3333555556667777777
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecCeE-----EEEecCCCCCCChHHHHHHHHHHHHHH
Q 043686 113 GKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKV-----HVFGTGDVSCPRSEGIFWELQSLMKKM 187 (282)
Q Consensus 113 A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~a~~~~~~l~~~M 187 (282)
|.++|+...+.+|.++.+-.++...|.-.++.+-|.+-..++-.-+.. +.+-.++...++++-++.-+++-+.-|
T Consensus 309 a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlsta 388 (478)
T KOG1129|consen 309 ALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTA 388 (478)
T ss_pred HHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhc
Confidence 777777777777777666666666666777777776644333322222 122222334455555553333444444
Q ss_pred HhCCCccCCC-cccccchhhhhhhhhhhhHHHHHHhhhccCCCCCeEEEeeccc----cccchHHHHHHHHHhhcc
Q 043686 188 EGDSLRPKPD-FSLHYVDEERKWTQIGHSEILALSFGLISTQVGATIHVTKNLR----MRHICHDFAKAISKMVEG 258 (282)
Q Consensus 188 ~~~g~~pd~~-t~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~a~~~~~~m~~~ 258 (282)
.+.|...|.= -+.+..-..+.......+.+++ +..++.+.. -.+++. +.|+++.|..+++...+.
T Consensus 389 t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrla----L~~d~~h~e--alnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 389 TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLA----LTSDAQHGE--ALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred cCcchhhhhhhccceeEEeccchHHHHHHHHHH----hccCcchHH--HHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 4444444330 0000000000110111222222 222222221 123333 789999999999987664
No 92
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0012 Score=59.90 Aligned_cols=120 Identities=13% Similarity=0.056 Sum_probs=61.5
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh------ccCC----CChhHHHHHHHHHH
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN------RIRS----PKVTHHALMVSVLA 73 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~------~g~~----p~~~~~~~li~~~~ 73 (282)
|.+.++.+.|.++|.+-.. +-| |+...+-+--..-..+.+.+|..+|. ..+. --..+++.|..+|.
T Consensus 390 y~~t~n~kLAe~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHhccHHHHHHHHHHHHh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 3444555556666555432 333 23333333322333455555555555 0011 12234555666666
Q ss_pred ccCChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686 74 RAGLFDEARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS 127 (282)
Q Consensus 74 ~~g~~~~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~ 127 (282)
|.++.++|...|++.- .+.|+.+|+++--.|...|+++.|.+.|.+...+.|++
T Consensus 467 kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 6666666666665522 23455566666666666666666666666666666655
No 93
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.58 E-value=0.00036 Score=62.69 Aligned_cols=125 Identities=13% Similarity=0.050 Sum_probs=95.0
Q ss_pred HHHHhHHh--CCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-c-----cCCCChhHHHHHHHHHHccCChHHHHHHHHhc
Q 043686 17 LFSELEKK--SSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-R-----IRSPKVTHHALMVSVLARAGLFDEARIFIQEY 88 (282)
Q Consensus 17 lf~~m~~~--~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-~-----g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 88 (282)
++..|.+. .+..-+.++...+++.+....+++++..++- . ...--..|..++|..|-+.|..+++.++++.=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 66666542 3456678899999999999999999888876 1 11111234569999999999999999999873
Q ss_pred C---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCChhHHHHHHHHHHHc
Q 043686 89 H---MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC-ELKPLSAENYIMLSNWYAAE 141 (282)
Q Consensus 89 ~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~p~~~~~~~~Li~~y~~~ 141 (282)
. +=||..|+|.||+.+.+.|++..|.++..+|. +-..+++.|+..-+.++.+.
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 3 77999999999999999999999999999987 32334557777666655555
No 94
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.57 E-value=0.00052 Score=57.78 Aligned_cols=96 Identities=9% Similarity=-0.025 Sum_probs=80.8
Q ss_pred HhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHH
Q 043686 41 CSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKR 115 (282)
Q Consensus 41 ~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~ 115 (282)
..+.+++.+|...|. .-+.| |.+-|+.--.+|++.|.++.|.+=-+.-. +.|. ..+|..|-.+|...|++++|.+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 566788999999998 77888 57777888999999999999998777644 7887 7899999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHH
Q 043686 116 VIDQLCELKPLSAENYIMLSN 136 (282)
Q Consensus 116 ~~~~m~~~~p~~~~~~~~Li~ 136 (282)
.|++...++|++.+..+.|=-
T Consensus 171 aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 171 AYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHhhhccCCCcHHHHHHHHH
Confidence 999999999998544444433
No 95
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.55 E-value=0.002 Score=50.67 Aligned_cols=131 Identities=13% Similarity=0.126 Sum_probs=84.2
Q ss_pred hHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC----hhHHHHHHHHHHccCChHHHHHH
Q 043686 11 RELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK----VTHHALMVSVLARAGLFDEARIF 84 (282)
Q Consensus 11 ~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~----~~~~~~li~~~~~~g~~~~A~~l 84 (282)
+..+...+..+.+..+-.-....|..+...+...|++++|...|+ ..+.|+ ..+|..+-..|.+.|+.++|.+.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444555555553202222234456666667778899999999998 333343 34788899999999999999999
Q ss_pred HHhcC-CCCC-HHHHHHHHHHHH-------hcCChhHH-------HHHHHHHHhcCCCChhHHHHHHHHHHHcCch
Q 043686 85 IQEYH-MERY-PEVLRALLEGCR-------IHVQVKTG-------KRVIDQLCELKPLSAENYIMLSNWYAAEAKW 144 (282)
Q Consensus 85 ~~~m~-~~p~-~~~~~~li~~~~-------~~g~~~~A-------~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~ 144 (282)
+++.. ..|+ ..+++.+...|. +.|++++| ..+|++..+..|++ +......+...|++
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN---YIEAQNWLKITGRF 167 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc---HHHHHHHHHHhcCC
Confidence 98854 4554 566777777777 77787744 44444555677743 34444444444443
No 96
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.55 E-value=0.00076 Score=48.66 Aligned_cols=71 Identities=11% Similarity=0.109 Sum_probs=45.4
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCC-CCCHHHHHHHHHHHhcCCCH--------HHHHHHhh----ccCCCChhHHHHH
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSI-EIDPLTFAAVLHACSTAGMV--------EEGWLCFN----RIRSPKVTHHALM 68 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~-~p~~~ty~~ll~a~~~~g~~--------~~a~~l~~----~g~~p~~~~~~~l 68 (282)
|.-+...+++.....+|+.+++ .|+ .|+..+|+.++.+.++...- -+...+++ .+++|+..||+.+
T Consensus 32 I~~~~~~~d~N~I~~lYqslkR-N~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKR-NGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 4455666888888888888888 888 88888888888877764321 11122222 5555555555555
Q ss_pred HHHHH
Q 043686 69 VSVLA 73 (282)
Q Consensus 69 i~~~~ 73 (282)
|..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 55543
No 97
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.00063 Score=60.84 Aligned_cols=142 Identities=17% Similarity=0.177 Sum_probs=88.3
Q ss_pred cCChHHHHHHHHHhHHhCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHHHHHHHccCChHHHHH
Q 043686 8 HGQRELGLSLFSELEKKSSIEIDP-LTFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALMVSVLARAGLFDEARI 83 (282)
Q Consensus 8 ~g~~~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~ 83 (282)
.+++++|..=|++-.+ +.|+. ..|--+--+.-+.+.++++...|+ ..++-.+.+||-.-..+.-.+++++|.+
T Consensus 407 L~q~e~A~aDF~Kai~---L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k 483 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAIS---LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVK 483 (606)
T ss_pred HHHHHHHHHHHHHHhh---cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHH
Confidence 3456667777766655 44543 244444444456677777777777 5554456677777777777777777777
Q ss_pred HHHhcC-CCCC---------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686 84 FIQEYH-MERY---------PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 84 l~~~m~-~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
.|+... ..|+ ..+--+++-.- -.+++.+|.+++++..+++|.....|.+|...-.+.|++++|+..|+.
T Consensus 484 ~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 484 QYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred HHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 777632 3333 11222222221 236777777777777777776667777777777777777777665543
No 98
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.54 E-value=0.0016 Score=62.10 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=94.7
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHH
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEA 81 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A 81 (282)
|++ |+.++|.+++.+..+ . -..+...|-+|-..|-+.|+.+++...+- .-+.| |..-|..+-+...+.|+++.|
T Consensus 150 far-g~~eeA~~i~~EvIk-q-dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIK-Q-DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHh-CCHHHHHHHHHHHHH-h-CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 455 999999999999886 3 23466789999999999999999998887 55556 578899999999999999999
Q ss_pred HHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 043686 82 RIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKP 125 (282)
Q Consensus 82 ~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p 125 (282)
.-.|.+.. ..| |...+--=.+-|-+.|+...|.+-|.++....|
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 99998843 444 433333346678889999999999999988777
No 99
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.49 E-value=0.0028 Score=57.33 Aligned_cols=186 Identities=9% Similarity=-0.031 Sum_probs=119.3
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCC-CCCCHH------HHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHHHHH
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSS-IEIDPL------TFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALMVSV 71 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g-~~p~~~------ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~li~~ 71 (282)
...|.+.|++++|.+++....+ .+ ..|... .+..++..-......+.....+. ...+.+...+.++...
T Consensus 194 ~~~~~~~~d~~~a~~~l~~l~k-~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~ 272 (409)
T TIGR00540 194 EEAYIRSGAWQALDDIIDNMAK-AGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEH 272 (409)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHH
Confidence 3568889999999999999987 64 445543 23333332222223344444444 2222377888888899
Q ss_pred HHccCChHHHHHHHHhcC-CCCCHHH---HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh--hHHHHHHHHHHHcCchh
Q 043686 72 LARAGLFDEARIFIQEYH-MERYPEV---LRALLEGCRIHVQVKTGKRVIDQLCELKPLSA--ENYIMLSNWYAAEAKWD 145 (282)
Q Consensus 72 ~~~~g~~~~A~~l~~~m~-~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~--~~~~~Li~~y~~~g~~~ 145 (282)
+.+.|+.++|.+++++.. ..||... +..........++.+++.+.++...+..|+++ ....+|...|.+.|+++
T Consensus 273 l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~ 352 (409)
T TIGR00540 273 LIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFI 352 (409)
T ss_pred HHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHH
Confidence 999999999999998854 4565332 12222233445778888888888888889887 66778888899999999
Q ss_pred hhhcccce--e-ee---cCeEEEEecCCCCCCChHHHHHHHHHHHHHHH
Q 043686 146 VVNQAYSW--I-EF---RNKVHVFGTGDVSCPRSEGIFWELQSLMKKME 188 (282)
Q Consensus 146 ~A~~~~~~--~-~~---~~~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~ 188 (282)
+|.+.|+. . .. ......+-..+.+.|+.++|.+...+-+..|.
T Consensus 353 ~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~ 401 (409)
T TIGR00540 353 EAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGLML 401 (409)
T ss_pred HHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 99987772 2 11 11113334445677888888744433333333
No 100
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.47 E-value=7.5e-05 Score=51.58 Aligned_cols=75 Identities=12% Similarity=0.190 Sum_probs=41.2
Q ss_pred cCChHHHHHHHHhcC-CCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcc
Q 043686 75 AGLFDEARIFIQEYH-MER---YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQA 150 (282)
Q Consensus 75 ~g~~~~A~~l~~~m~-~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~ 150 (282)
.|+++.|..+|+++. ..| +...|-.+..+|.+.|++++|..+++. .+..|.+......+..+|.+.|++++|.+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 356666666666653 223 333444466666666666666666666 444443434444456666666666666543
No 101
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.0031 Score=52.38 Aligned_cols=134 Identities=9% Similarity=0.005 Sum_probs=77.0
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHH----HHHHHHHccCCh
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHA----LMVSVLARAGLF 78 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~----~li~~~~~~g~~ 78 (282)
|+..|++++|++..+.... + +....+ +..+.+.-+++-|....+ ..+. +..|.+ ++|......+.+
T Consensus 118 ~~~~~~~deAl~~~~~~~~---l--E~~Al~--VqI~lk~~r~d~A~~~lk~mq~id-ed~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 118 YMHDGDFDEALKALHLGEN---L--EAAALN--VQILLKMHRFDLAEKELKKMQQID-EDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hhcCCChHHHHHHHhccch---H--HHHHHH--HHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHhccchhh
Confidence 5556666666666655221 1 222222 222344455555555555 2222 223333 444444445667
Q ss_pred HHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhh
Q 043686 79 DEARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDV 146 (282)
Q Consensus 79 ~~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~ 146 (282)
.+|.-+|++|. ..|+.-+-|.+..++...|++++|+.++++...-+|.++.+...+|-.---.|.-.+
T Consensus 190 qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 190 QDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred hhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence 77777777775 567777777777777777777777777777776666666666555554444554433
No 102
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.44 E-value=0.00048 Score=45.36 Aligned_cols=64 Identities=11% Similarity=0.088 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCC
Q 043686 62 VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHV-QVKTGKRVIDQLCELKP 125 (282)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~p 125 (282)
..+|..+-..+.+.|++++|+..|++.. ..|+ ...|..+-.+|.+.| ++++|.+.|++..+++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3455666666666666666666666632 4454 556666666666666 56666666666665555
No 103
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.44 E-value=0.0029 Score=56.70 Aligned_cols=115 Identities=15% Similarity=0.061 Sum_probs=98.0
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHH-HHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHH
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLH-ACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDE 80 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~-a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~ 80 (282)
+-..|++++|+..++.+.. -.||..-|..+.. .+.+.++.++|.+.++ ....|+ ....-.+-++|-+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~---~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA---AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 4568999999999999877 5688887777666 6888999999999999 778887 5667788999999999999
Q ss_pred HHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043686 81 ARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCE 122 (282)
Q Consensus 81 A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 122 (282)
|.++++.-. -.| |...|..|-.+|...|+..+|.....++-.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999865 244 588999999999999999999988887653
No 104
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0018 Score=58.84 Aligned_cols=113 Identities=12% Similarity=0.030 Sum_probs=88.9
Q ss_pred HhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-----CCC----CHHHHHHHHHHHHhcC
Q 043686 41 CSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-----MER----YPEVLRALLEGCRIHV 108 (282)
Q Consensus 41 ~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-----~~p----~~~~~~~li~~~~~~g 108 (282)
|.+.++++-|.+.|. .++.| |+.+.+-+.-..-+.+.+.+|...|..-. ..+ -..+++.|-.+|-+.+
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 555666777777776 77777 57777877777778888999999987742 111 1346788888899999
Q ss_pred ChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686 109 QVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 109 ~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
..++|...|++...+.|.++.+|.++.-.|...|+++.|...|..
T Consensus 470 ~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred hHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 999999999999999999999999999999999999999875544
No 105
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.41 E-value=0.002 Score=46.85 Aligned_cols=90 Identities=11% Similarity=0.029 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---hhHHHHH
Q 043686 63 THHALMVSVLARAGLFDEARIFIQEYH-MERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS---AENYIML 134 (282)
Q Consensus 63 ~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~---~~~~~~L 134 (282)
.++-.+...+.+.|++++|.+.|+.+. ..|+ ...+..+...+.+.|++++|...|+......|++ ..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 356778888999999999999999874 3443 3567778999999999999999999999877764 3567778
Q ss_pred HHHHHHcCchhhhhcccc
Q 043686 135 SNWYAAEAKWDVVNQAYS 152 (282)
Q Consensus 135 i~~y~~~g~~~~A~~~~~ 152 (282)
...|.+.|+.++|...+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~ 100 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQ 100 (119)
T ss_pred HHHHHHhCChHHHHHHHH
Confidence 888888888877765443
No 106
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.41 E-value=0.0021 Score=53.31 Aligned_cols=120 Identities=12% Similarity=0.048 Sum_probs=87.9
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHH----HHHHHHHHHhcC--------CCHHHHHHHhh--ccCCCChh-HH--
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPL----TFAAVLHACSTA--------GMVEEGWLCFN--RIRSPKVT-HH-- 65 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~----ty~~ll~a~~~~--------g~~~~a~~l~~--~g~~p~~~-~~-- 65 (282)
..|.+.|++++|+..|++..+ ..|+.. ++..+-.++.+. |+.++|.+.|+ ....|+.. .+
T Consensus 78 ~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a 154 (235)
T TIGR03302 78 YAYYKSGDYAEAIAAADRFIR---LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDA 154 (235)
T ss_pred HHHHhcCCHHHHHHHHHHHHH---HCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHH
Confidence 467789999999999999987 334322 333333444443 78899999998 44455432 22
Q ss_pred ---------------HHHHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 043686 66 ---------------ALMVSVLARAGLFDEARIFIQEYH-MERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKP 125 (282)
Q Consensus 66 ---------------~~li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p 125 (282)
-.+...|.+.|+.++|...|++.. ..|+ ...|..+..++.+.|+.++|...++.+....|
T Consensus 155 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 155 KKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 145567889999999999999864 2332 57899999999999999999999998876555
No 107
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.39 E-value=0.0018 Score=48.37 Aligned_cols=26 Identities=12% Similarity=0.127 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHhh
Q 043686 30 DPLTFAAVLHACSTAGMVEEGWLCFN 55 (282)
Q Consensus 30 ~~~ty~~ll~a~~~~g~~~~a~~l~~ 55 (282)
|..++.++|-++++.|+++....+.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~ 26 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIK 26 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 45677777777777777777777766
No 108
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.38 E-value=0.0032 Score=56.67 Aligned_cols=103 Identities=15% Similarity=0.112 Sum_probs=75.8
Q ss_pred hhhhcCChHHHHHHHHHhHHhC--CCCCCHHHHHHHHHHHhcCCCHHHHHHHhh----ccCCCChhHHHHHHHHHHccCC
Q 043686 4 GYSLHGQRELGLSLFSELEKKS--SIEIDPLTFAAVLHACSTAGMVEEGWLCFN----RIRSPKVTHHALMVSVLARAGL 77 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~--g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~----~g~~p~~~~~~~li~~~~~~g~ 77 (282)
.....-+++++..++.+.+. . ...--..|..++|..|-+.|..+++.+++. .|+-||.+|+|.|++.+-+.|+
T Consensus 75 ~~~~~~~~d~~~~~L~k~R~-s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~ 153 (429)
T PF10037_consen 75 NVESKDDLDEVEDVLYKFRH-SPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGN 153 (429)
T ss_pred hcCCHhHHHHHHHHHHHHHc-CcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhccc
Confidence 33444567778888888776 3 121222355699999999999999999998 9999999999999999999999
Q ss_pred hHHHHHHHHhcC---CCCCHHHHHHHHHHHHhc
Q 043686 78 FDEARIFIQEYH---MERYPEVLRALLEGCRIH 107 (282)
Q Consensus 78 ~~~A~~l~~~m~---~~p~~~~~~~li~~~~~~ 107 (282)
+..|.++..+|. .-.+..|+.--+.+|.+-
T Consensus 154 ~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 154 YKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999998865 223445555555555444
No 109
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.37 E-value=0.012 Score=51.75 Aligned_cols=180 Identities=12% Similarity=0.005 Sum_probs=117.6
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHH-HHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHH---HHHHHHccCC
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAV-LHACSTAGMVEEGWLCFN--RIRSPK-VTHHAL---MVSVLARAGL 77 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~l-l~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~---li~~~~~~g~ 77 (282)
+...|+.++|.+-+.+.....-..++...-..+ ...+...|++++|.++++ ....|+ ...+.. ........|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~ 95 (355)
T cd05804 16 LLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGM 95 (355)
T ss_pred HHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccC
Confidence 344567777777776654412223343323222 224567899999999998 334554 444442 2222233566
Q ss_pred hHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceee
Q 043686 78 FDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIE 155 (282)
Q Consensus 78 ~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~ 155 (282)
.+.+.+.+.... ..|+ ......+...+...|++++|.+.+++..+..|+++..+..+...|...|++++|...+....
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l 175 (355)
T cd05804 96 RDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWR 175 (355)
T ss_pred chhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 677777766532 3454 44556667789999999999999999999999998889999999999999999998554422
Q ss_pred ecC----eE--E---EEecCCCCCCChHHHHHHHHHHHHHHH
Q 043686 156 FRN----KV--H---VFGTGDVSCPRSEGIFWELQSLMKKME 188 (282)
Q Consensus 156 ~~~----~~--~---~~i~~~~~~~~~~~a~~~~~~l~~~M~ 188 (282)
... .. + .+-..+...|+.++|. .++++..
T Consensus 176 ~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~----~~~~~~~ 213 (355)
T cd05804 176 DTWDCSSMLRGHNWWHLALFYLERGDYEAAL----AIYDTHI 213 (355)
T ss_pred hccCCCcchhHHHHHHHHHHHHHCCCHHHHH----HHHHHHh
Confidence 211 11 0 1233456788999988 6776664
No 110
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.30 E-value=0.00078 Score=44.33 Aligned_cols=59 Identities=17% Similarity=0.149 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC-chhhhhccc
Q 043686 93 YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEA-KWDVVNQAY 151 (282)
Q Consensus 93 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g-~~~~A~~~~ 151 (282)
+..+|..+-..+.+.|++++|...|++..+++|+++..|..+..+|.+.| ++++|.+.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~ 61 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDF 61 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999 788887643
No 111
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.30 E-value=0.00045 Score=45.32 Aligned_cols=60 Identities=18% Similarity=0.233 Sum_probs=44.8
Q ss_pred HccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHH
Q 043686 73 ARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIM 133 (282)
Q Consensus 73 ~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~ 133 (282)
.+.|++++|.++|++.. ..| |..++-.+..+|.+.|++++|.++++.+....|++ ..|..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~-~~~~~ 63 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN-PEYQQ 63 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH-HHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH-HHHHH
Confidence 35688888888888864 455 57777788888888888888888888888888865 34433
No 112
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.30 E-value=0.0013 Score=58.26 Aligned_cols=85 Identities=11% Similarity=0.003 Sum_probs=75.5
Q ss_pred HHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhh
Q 043686 69 VSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDV 146 (282)
Q Consensus 69 i~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~ 146 (282)
...+.+.|++++|.++|++.. ..|+ ...|..+..+|.+.|++++|...++++..+.|++...|..+..+|...|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 345667899999999999864 5665 78889999999999999999999999999999999999999999999999999
Q ss_pred hhcccce
Q 043686 147 VNQAYSW 153 (282)
Q Consensus 147 A~~~~~~ 153 (282)
|...+..
T Consensus 89 A~~~~~~ 95 (356)
T PLN03088 89 AKAALEK 95 (356)
T ss_pred HHHHHHH
Confidence 9986655
No 113
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.27 E-value=0.0049 Score=56.29 Aligned_cols=90 Identities=9% Similarity=-0.052 Sum_probs=50.8
Q ss_pred CChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHH
Q 043686 60 PKVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNW 137 (282)
Q Consensus 60 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~ 137 (282)
+|..+++.|-=.|--.|++++|.+.|+..- ++|+ -..||-|-..+++..+.++|...|.+..++.|.-+.+...|.=.
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS 507 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS 507 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence 444555555555555666666666666532 4554 55566666666666666666666666666666544444444444
Q ss_pred HHHcCchhhhhc
Q 043686 138 YAAEAKWDVVNQ 149 (282)
Q Consensus 138 y~~~g~~~~A~~ 149 (282)
|.+.|.+.+|.+
T Consensus 508 ~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 508 CMNLGAYKEAVK 519 (579)
T ss_pred hhhhhhHHHHHH
Confidence 555555555544
No 114
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.25 E-value=0.0033 Score=49.61 Aligned_cols=87 Identities=13% Similarity=-0.051 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHH
Q 043686 62 VTHHALMVSVLARAGLFDEARIFIQEYH-MERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSN 136 (282)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~ 136 (282)
...|..+...|.+.|++++|...|++.. ..|+ ...|..+...|.+.|++++|.+.+++.....|.+...+..+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4567888889999999999999999854 3333 4688999999999999999999999999999988888888889
Q ss_pred HHHHcCchhhhh
Q 043686 137 WYAAEAKWDVVN 148 (282)
Q Consensus 137 ~y~~~g~~~~A~ 148 (282)
.|...|+...+.
T Consensus 115 ~~~~~g~~~~a~ 126 (172)
T PRK02603 115 IYHKRGEKAEEA 126 (172)
T ss_pred HHHHcCChHhHh
Confidence 998888866654
No 115
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.25 E-value=0.017 Score=44.23 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=39.5
Q ss_pred HHHHccCChHHHHHHHHhcC-CCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCch
Q 043686 70 SVLARAGLFDEARIFIQEYH-MERYP----EVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKW 144 (282)
Q Consensus 70 ~~~~~~g~~~~A~~l~~~m~-~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~ 144 (282)
+.+...|++++|...|+... -.||. ...-.|...+...|++++|+..++.... .|..+..+..+-+.|.+.|+.
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDY 134 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCH
Confidence 45555666666666665543 12221 2333345555566666666666544221 111224444555666666666
Q ss_pred hhhhc
Q 043686 145 DVVNQ 149 (282)
Q Consensus 145 ~~A~~ 149 (282)
++|..
T Consensus 135 ~~A~~ 139 (145)
T PF09976_consen 135 DEARA 139 (145)
T ss_pred HHHHH
Confidence 66654
No 116
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.24 E-value=0.0041 Score=48.88 Aligned_cols=82 Identities=11% Similarity=-0.108 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHH
Q 043686 62 VTHHALMVSVLARAGLFDEARIFIQEYH-MERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSN 136 (282)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~ 136 (282)
...|..+...+...|++++|...|++.. ..|+ ..+|..+-..|.+.|+.++|.+.++....+.|....++..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4567778888889999999999999853 3333 3589999999999999999999999999999988888888888
Q ss_pred HHHHcCc
Q 043686 137 WYAAEAK 143 (282)
Q Consensus 137 ~y~~~g~ 143 (282)
.|...|+
T Consensus 115 i~~~~~~ 121 (168)
T CHL00033 115 ICHYRGE 121 (168)
T ss_pred HHHHhhH
Confidence 8885554
No 117
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.22 E-value=0.0053 Score=52.60 Aligned_cols=134 Identities=11% Similarity=0.061 Sum_probs=97.8
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCC-CCCCHHHHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHHHHHHHccCC
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSS-IEIDPLTFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALMVSVLARAGL 77 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g-~~p~~~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~li~~~~~~g~ 77 (282)
|...-+.+..+.|..+|.+.++ .+ +..+.....+++.-+ ..++.+.|..+|+ .-+..+...|..-|+.+.+.|+
T Consensus 8 m~~~~r~~g~~~aR~vF~~a~~-~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d 85 (280)
T PF05843_consen 8 MRFMRRTEGIEAARKVFKRARK-DKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLND 85 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-CCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHhCChHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCc
Confidence 3455566778999999999986 43 445555555555433 3467788999999 4455567888899999999999
Q ss_pred hHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686 78 FDEARIFIQEYH-MERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY 138 (282)
Q Consensus 78 ~~~A~~l~~~m~-~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y 138 (282)
.+.|..+|++.. ..|. ...|...|.-=.+.|+++.+.++.+.+.+..|.+ .+...+++=|
T Consensus 86 ~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~-~~~~~f~~ry 150 (280)
T PF05843_consen 86 INNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED-NSLELFSDRY 150 (280)
T ss_dssp HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh-hHHHHHHHHh
Confidence 999999999854 2333 3599999999999999999999999999888865 5555566655
No 118
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.21 E-value=0.00095 Score=45.96 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=32.7
Q ss_pred cCChHHHHHHHHHhHHhCCCCC---CHHHHHHHHHHHhcCCCHHHHHHHhh-ccCCCC-hhHHHHHHHHHHccCChHHHH
Q 043686 8 HGQRELGLSLFSELEKKSSIEI---DPLTFAAVLHACSTAGMVEEGWLCFN-RIRSPK-VTHHALMVSVLARAGLFDEAR 82 (282)
Q Consensus 8 ~g~~~~A~~lf~~m~~~~g~~p---~~~ty~~ll~a~~~~g~~~~a~~l~~-~g~~p~-~~~~~~li~~~~~~g~~~~A~ 82 (282)
.|++++|+.+|+++.+ ..| +...+-.+-.++.+.|+.++|.++++ ....|+ ....-.+..+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~---~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE---LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHH---HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHH---HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4566666666666655 223 22222224444555555555555554 112221 112222334444445555555
Q ss_pred HHHH
Q 043686 83 IFIQ 86 (282)
Q Consensus 83 ~l~~ 86 (282)
++|+
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 119
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.19 E-value=0.012 Score=52.58 Aligned_cols=115 Identities=8% Similarity=0.040 Sum_probs=77.4
Q ss_pred HHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHh-cC-CCCCHHHHHHHHHHHHhcCChhHH
Q 043686 39 HACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQE-YH-MERYPEVLRALLEGCRIHVQVKTG 113 (282)
Q Consensus 39 ~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~-m~-~~p~~~~~~~li~~~~~~g~~~~A 113 (282)
+.|--..+..+|.+++- ..+.| |..+.+-|-+.|-+.|+-..|.+..-+ -. +.-|..|-.-|-+-|....-+++|
T Consensus 566 niye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~eka 645 (840)
T KOG2003|consen 566 NIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKA 645 (840)
T ss_pred HHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHH
Confidence 33333444444444444 45555 467777888888888888888877654 23 444666666677777777788888
Q ss_pred HHHHHHHHhcCCCChhHHHHHH-HHHHHcCchhhhhccccee
Q 043686 114 KRVIDQLCELKPLSAENYIMLS-NWYAAEAKWDVVNQAYSWI 154 (282)
Q Consensus 114 ~~~~~~m~~~~p~~~~~~~~Li-~~y~~~g~~~~A~~~~~~~ 154 (282)
...|++..=+.| +..-|..+| +.+-+.|++.+|...+..+
T Consensus 646 i~y~ekaaliqp-~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 646 INYFEKAALIQP-NQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred HHHHHHHHhcCc-cHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 888888877788 557888777 4556678888888755443
No 120
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.16 E-value=0.017 Score=53.69 Aligned_cols=142 Identities=8% Similarity=-0.006 Sum_probs=106.7
Q ss_pred HHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--------c----------cCCCChhHH--HHHHHHH
Q 043686 13 LGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--------R----------IRSPKVTHH--ALMVSVL 72 (282)
Q Consensus 13 ~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--------~----------g~~p~~~~~--~~li~~~ 72 (282)
.+...+..+.. .|++ .+|+.|-.-|......+-..+++. . .-.|+...| .-+-..|
T Consensus 129 ~~~~yl~~~l~-KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhy 204 (517)
T PF12569_consen 129 RLDEYLRPQLR-KGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHY 204 (517)
T ss_pred HHHHHHHHHHh-cCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHH
Confidence 34455555666 6764 356667666776666555555555 1 123444344 5567778
Q ss_pred HccCChHHHHHHHHhc-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcc
Q 043686 73 ARAGLFDEARIFIQEY-HMERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQA 150 (282)
Q Consensus 73 ~~~g~~~~A~~l~~~m-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~ 150 (282)
-..|+.++|.+.+++. ...|+ +..|.+-...|...|++++|.+.+++.+++++.|-..-+-.+..+.++|++++|.+.
T Consensus 205 d~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~ 284 (517)
T PF12569_consen 205 DYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKT 284 (517)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8999999999999974 47888 678888888999999999999999999999998877788889999999999999996
Q ss_pred cceeeecC
Q 043686 151 YSWIEFRN 158 (282)
Q Consensus 151 ~~~~~~~~ 158 (282)
++.....+
T Consensus 285 ~~~Ftr~~ 292 (517)
T PF12569_consen 285 ASLFTRED 292 (517)
T ss_pred HHhhcCCC
Confidence 55544433
No 121
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.15 E-value=0.01 Score=45.35 Aligned_cols=111 Identities=13% Similarity=0.090 Sum_probs=81.1
Q ss_pred hcCChHHHHHHHHHhHHhCCCCCCH-H-HH--HHHHHHHhcCCCHHHHHHHhh--ccCCCCh----hHHHHHHHHHHccC
Q 043686 7 LHGQRELGLSLFSELEKKSSIEIDP-L-TF--AAVLHACSTAGMVEEGWLCFN--RIRSPKV----THHALMVSVLARAG 76 (282)
Q Consensus 7 ~~g~~~~A~~lf~~m~~~~g~~p~~-~-ty--~~ll~a~~~~g~~~~a~~l~~--~g~~p~~----~~~~~li~~~~~~g 76 (282)
..++...+...++.+.. .. |+. . .. -.+-..+...|++++|...|+ ..-.||. ...-.|...+...|
T Consensus 23 ~~~~~~~~~~~~~~l~~-~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~ 99 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAK-DY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQG 99 (145)
T ss_pred HCCCHHHHHHHHHHHHH-HC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC
Confidence 47889999999999987 32 333 2 22 224467888999999999999 2222443 23345678888999
Q ss_pred ChHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043686 77 LFDEARIFIQEYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQL 120 (282)
Q Consensus 77 ~~~~A~~l~~~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 120 (282)
++++|...++..+ -......+..+-..|.+.|+.++|...|+..
T Consensus 100 ~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 100 QYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred CHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 9999999998865 1223456667777899999999999999864
No 122
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.07 E-value=0.00093 Score=43.79 Aligned_cols=50 Identities=10% Similarity=0.238 Sum_probs=44.8
Q ss_pred HhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccccee
Q 043686 105 RIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWI 154 (282)
Q Consensus 105 ~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~ 154 (282)
.+.|++++|.+.|+++....|++...+..|...|.+.|++++|...+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999998877664
No 123
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.06 E-value=0.021 Score=53.25 Aligned_cols=144 Identities=9% Similarity=-0.036 Sum_probs=79.5
Q ss_pred hcCChHHHHHHHHHhHHhCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHHHHH
Q 043686 7 LHGQRELGLSLFSELEKKSSIEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDEARI 83 (282)
Q Consensus 7 ~~g~~~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~ 83 (282)
..|++..|..++.+.-+ .-|+. ..|-.-++.-.....+++|+.+|. .+..|+..+|.-=+..---.+++++|.+
T Consensus 596 ~agdv~~ar~il~~af~---~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFE---ANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred hcCCcHHHHHHHHHHHH---hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 44666666666666544 22332 345555555566666666666666 5555555555544444444556666666
Q ss_pred HHHhc-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686 84 FIQEY-HMERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 84 l~~~m-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
++++- +.-|+ .-.|-.+-..+-+.++++.|.+.|..=.+..|..+..|.+|.+.=-+.|.+-+|..+++.
T Consensus 673 llEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 673 LLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred HHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 66552 23444 334555555566666666666655554455555555555555555555555555554444
No 124
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.02 E-value=0.018 Score=49.28 Aligned_cols=188 Identities=7% Similarity=0.099 Sum_probs=120.5
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCHH--HHHHHHHHHhcCCCHHHHHHHhh-ccCCC--ChhHHHHHHHHHHccCCh
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDPL--TFAAVLHACSTAGMVEEGWLCFN-RIRSP--KVTHHALMVSVLARAGLF 78 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~--ty~~ll~a~~~~g~~~~a~~l~~-~g~~p--~~~~~~~li~~~~~~g~~ 78 (282)
-|-+.|.+++|+++-..+.+..+..-+.. ..--|-.-|..+|.+|.|..+|. .--.| -....--|+..|-...++
T Consensus 78 LfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW 157 (389)
T COG2956 78 LFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREW 157 (389)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHH
Confidence 46677888888888887665122322222 23345556778888888888887 11112 133455677888888888
Q ss_pred HHHHHHHHhcC-CCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686 79 DEARIFIQEYH-MERY------PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 79 ~~A~~l~~~m~-~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
++|.++-++.. ..|. ..-|.-|-..+....++++|..++++..+.+|..+..-..|-+.+...|++..|.+..
T Consensus 158 ~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~ 237 (389)
T COG2956 158 EKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEAL 237 (389)
T ss_pred HHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHH
Confidence 88888777643 2222 1235555556666677888888888888778877777777778888888888888766
Q ss_pred ceeeecCeE------EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccC
Q 043686 152 SWIEFRNKV------HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPK 195 (282)
Q Consensus 152 ~~~~~~~~~------~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd 195 (282)
..+...+.- ..+..+|...|+.++.. ..+.++.+.--.|+
T Consensus 238 e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~----~fL~~~~~~~~g~~ 283 (389)
T COG2956 238 ERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL----NFLRRAMETNTGAD 283 (389)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH----HHHHHHHHccCCcc
Confidence 655544432 45666777777777765 55566555443333
No 125
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.98 E-value=0.014 Score=55.94 Aligned_cols=113 Identities=14% Similarity=0.053 Sum_probs=94.3
Q ss_pred cCCCHHHHHHHhh--ccCCC--ChhHHHHHHHHHHccCChHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCChhHHHH
Q 043686 43 TAGMVEEGWLCFN--RIRSP--KVTHHALMVSVLARAGLFDEARIFIQEYH---MERYPEVLRALLEGCRIHVQVKTGKR 115 (282)
Q Consensus 43 ~~g~~~~a~~l~~--~g~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~p~~~~~~~li~~~~~~g~~~~A~~ 115 (282)
+.+...++..-|- ..+.| ++..|.-+.++|-+.|++.+|.++|..+. ..-+...|--+-.+|...|..++|.+
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 3444555555444 44333 56788999999999999999999999976 23357899999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceee
Q 043686 116 VIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIE 155 (282)
Q Consensus 116 ~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~ 155 (282)
.|+......|++...-.+|-..|-+.|+.|+|.+..+.+.
T Consensus 471 ~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 471 FYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999999999999999999777754
No 126
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.98 E-value=0.016 Score=52.08 Aligned_cols=110 Identities=10% Similarity=0.105 Sum_probs=60.4
Q ss_pred CCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043686 44 AGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQL 120 (282)
Q Consensus 44 ~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 120 (282)
.|++..|+++|+ ....|+...|.+.|+.=-+-..++.|..+++... +.|++.+|---..-=-++|++.-|..+|+..
T Consensus 154 LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 455666666666 5666666666666666666666666666666644 5566666655555555666666666666665
Q ss_pred HhcCCCC---hhHHHHHHHHHHHcCchhhhhcccce
Q 043686 121 CELKPLS---AENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 121 ~~~~p~~---~~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
...-.++ ...++++...=.++...+.|.-++..
T Consensus 234 ie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyky 269 (677)
T KOG1915|consen 234 IEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKY 269 (677)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5321111 23334443333444445555444443
No 127
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.97 E-value=0.012 Score=54.74 Aligned_cols=66 Identities=14% Similarity=-0.016 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686 62 VTHHALMVSVLARAGLFDEARIFIQEYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS 127 (282)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~ 127 (282)
...|.++--.....|++++|...|++.. ..|+...|..+...|...|+.++|.+.|++...++|.+
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 4455555444445566666666666644 55666666666666666666666666666666666644
No 128
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.92 E-value=0.013 Score=53.67 Aligned_cols=139 Identities=16% Similarity=0.086 Sum_probs=109.1
Q ss_pred hHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHh
Q 043686 11 RELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQE 87 (282)
Q Consensus 11 ~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~ 87 (282)
..+..++|-++-...+.++|...++.|--.|--.|.+++|...|+ .-+.| |...||-|...+++..+-++|...|.+
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~r 489 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNR 489 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHH
Confidence 445667777775535655666666666666888899999999999 88888 578999999999999999999999998
Q ss_pred cC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHcCchhhhhc
Q 043686 88 YH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPL----------SAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 88 m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~----------~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
.. ++|+ +.++..|--+|.+.|.+++|.+.|-....+.+. +-..|.+|=.++.-.++.|-+.+
T Consensus 490 ALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 490 ALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 65 8998 778888999999999999999999987743221 12578888777777777664443
No 129
>PLN02789 farnesyltranstransferase
Probab=96.90 E-value=0.046 Score=47.76 Aligned_cols=135 Identities=9% Similarity=-0.056 Sum_probs=100.4
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCHH-HHHHHHHHHhcCC-CHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCCh
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDPL-TFAAVLHACSTAG-MVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLF 78 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~-ty~~ll~a~~~~g-~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~ 78 (282)
.+...++.++|+.++.+... +.|+.. .|+.--..+...| .++++...++ ....| +..+|+..--.+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~---lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIR---LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch
Confidence 45667889999999999887 567665 3443333455556 5789999988 44445 456777665556666653
Q ss_pred --HHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 043686 79 --DEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAE 141 (282)
Q Consensus 79 --~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~ 141 (282)
+++.++++++- ..| |..+|+...-.+.+.|++++|++.++++.+.+|.+...|+-....+.+.
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 67788887765 455 5889999999999999999999999999999998888888766555544
No 130
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.89 E-value=0.019 Score=51.55 Aligned_cols=76 Identities=14% Similarity=0.139 Sum_probs=34.7
Q ss_pred CChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHHHHHHHH
Q 043686 9 GQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDEARIFIQ 86 (282)
Q Consensus 9 g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 86 (282)
|++..|.++|.+-.+ ..|+.-.|.+.|+-=.+-...+.|+++++ .-+.|++.+|--....=-++|++.-|.++|+
T Consensus 155 gNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 155 GNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred cccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 444444444444333 34444444444444444444444444444 3333444444444444444444444444444
Q ss_pred h
Q 043686 87 E 87 (282)
Q Consensus 87 ~ 87 (282)
.
T Consensus 232 r 232 (677)
T KOG1915|consen 232 R 232 (677)
T ss_pred H
Confidence 3
No 131
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.88 E-value=0.0056 Score=40.59 Aligned_cols=60 Identities=12% Similarity=0.112 Sum_probs=51.3
Q ss_pred HHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChh
Q 043686 70 SVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAE 129 (282)
Q Consensus 70 ~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~ 129 (282)
..|.+.+++++|.++++.+. ..|+ ...|...-..|.+.|++++|.+.|+...+..|+++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 56888999999999999875 5665 778888888999999999999999999999996643
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.83 E-value=0.016 Score=56.73 Aligned_cols=121 Identities=12% Similarity=0.063 Sum_probs=90.4
Q ss_pred CCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCCh-hHHHHHHHHHHccCChHHHHHHHHhcC-CCCCH-------
Q 043686 27 IEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKV-THHALMVSVLARAGLFDEARIFIQEYH-MERYP------- 94 (282)
Q Consensus 27 ~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~~------- 94 (282)
..|+ ...+..|+..+-..+++++|.++.+ ....|+. ..|-.+...|.+.++.++|..+ .-.. +..+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-hhhhhcccccchhHHHH
Confidence 4443 4567778888888888888888888 4555553 2333333366666766666665 2221 22233
Q ss_pred ------------HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 95 ------------EVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 95 ------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
..+-+|..+|-+.|+.++|..++++..+.+|.|+...|-+.-.|... ++++|..
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence 56777888899999999999999999999999999999999999999 9999988
No 133
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.81 E-value=0.013 Score=45.19 Aligned_cols=88 Identities=9% Similarity=-0.064 Sum_probs=73.9
Q ss_pred HHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCh
Q 043686 36 AVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQV 110 (282)
Q Consensus 36 ~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~ 110 (282)
.+-.-+...|++++|..+|+ .-+.|. ..-|-.|--++-..|++++|.+.|...- ..|| ..++-.+-.++.+.|+.
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 33445677899999999999 777885 4556689999999999999999999854 5676 78888899999999999
Q ss_pred hHHHHHHHHHHhc
Q 043686 111 KTGKRVIDQLCEL 123 (282)
Q Consensus 111 ~~A~~~~~~m~~~ 123 (282)
+.|.+.|+.....
T Consensus 120 ~~A~~aF~~Ai~~ 132 (157)
T PRK15363 120 CYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998854
No 134
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.78 E-value=0.028 Score=49.26 Aligned_cols=112 Identities=9% Similarity=-0.004 Sum_probs=91.8
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-----ccCCCChhHHHHHHHHHHccCC
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-----RIRSPKVTHHALMVSVLARAGL 77 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-----~g~~p~~~~~~~li~~~~~~g~ 77 (282)
.-+.+.|+.++|.++..+-.+ .+..|+.. .+-.+.+.++.+.-....+ .+-.| -.+.+|...|.+.+.
T Consensus 271 ~~li~l~~~~~A~~~i~~~Lk-~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~ 343 (400)
T COG3071 271 ERLIRLGDHDEAQEIIEDALK-RQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKL 343 (400)
T ss_pred HHHHHcCChHHHHHHHHHHHH-hccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhH
Confidence 346788999999999999888 77777732 2335666677666665555 44444 788899999999999
Q ss_pred hHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 78 FDEARIFIQEY-HMERYPEVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 78 ~~~A~~l~~~m-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
+.+|.+.|+.. +..|+..+|+-+-.++.+.|+.++|.+++++..
T Consensus 344 w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 344 WGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 99999999974 479999999999999999999999999999977
No 135
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.76 E-value=0.003 Score=59.11 Aligned_cols=176 Identities=14% Similarity=0.078 Sum_probs=134.4
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDE 80 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~ 80 (282)
..+.+.|-..+|+.+|++... |--+|-.|...|+..+|.++.. ..-.||..-|..+.|....-.-+++
T Consensus 406 ell~slGitksAl~I~Erlem----------w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEk 475 (777)
T KOG1128|consen 406 ELLLSLGITKSALVIFERLEM----------WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEK 475 (777)
T ss_pred HHHHHcchHHHHHHHHHhHHH----------HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHH
Confidence 346677888889888888654 6667888889999999988888 3456788999999999998888999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceee----e
Q 043686 81 ARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIE----F 156 (282)
Q Consensus 81 A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~----~ 156 (282)
|.++++... ..-...|+. -..+.++++++.+.|+.-.+++|-...+|-.+--++-+.+++..|.+.|..-. .
T Consensus 476 awElsn~~s-arA~r~~~~---~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd 551 (777)
T KOG1128|consen 476 AWELSNYIS-ARAQRSLAL---LILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD 551 (777)
T ss_pred HHHHhhhhh-HHHHHhhcc---ccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 999998754 111112222 22337899999999999999999888999999999999999999998665422 1
Q ss_pred cC-eEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCC
Q 043686 157 RN-KVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKP 196 (282)
Q Consensus 157 ~~-~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~ 196 (282)
+. ..|.+-.+|.+.++..+|+ ..+.+-.+....|..
T Consensus 552 ~~eaWnNls~ayi~~~~k~ra~----~~l~EAlKcn~~~w~ 588 (777)
T KOG1128|consen 552 NAEAWNNLSTAYIRLKKKKRAF----RKLKEALKCNYQHWQ 588 (777)
T ss_pred chhhhhhhhHHHHHHhhhHHHH----HHHHHHhhcCCCCCe
Confidence 11 1277788888899999998 777777776665543
No 136
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.74 E-value=0.018 Score=53.74 Aligned_cols=140 Identities=14% Similarity=0.097 Sum_probs=89.8
Q ss_pred cCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHH
Q 043686 8 HGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIF 84 (282)
Q Consensus 8 ~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l 84 (282)
+|..++-..+|++... .++-...-|-...+-.-.+|++..|+.++. ....| +..+|-+-+..-....+++.|..+
T Consensus 563 hgt~Esl~Allqkav~--~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVE--QCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred cCcHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHH
Confidence 4666666777777654 132233344444455666777777777776 33444 355677777777777777777777
Q ss_pred HHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 85 IQEYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 85 ~~~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
|.+.. ..|...+|.-=+.----.+++++|.+++++..+.-|+-...|-.+-..|-..++++.|..
T Consensus 641 lakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~ 706 (913)
T KOG0495|consen 641 LAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMARE 706 (913)
T ss_pred HHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHH
Confidence 77654 456666665555544445677777777777777777666667777777777777777776
No 137
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.73 E-value=0.0028 Score=41.16 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=46.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccc
Q 043686 100 LLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYS 152 (282)
Q Consensus 100 li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~ 152 (282)
+...+.+.|++++|.+.|++..+..|.++..+..+...|...|++++|...+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 55 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYE 55 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999976544
No 138
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.73 E-value=0.008 Score=56.64 Aligned_cols=106 Identities=11% Similarity=0.084 Sum_probs=79.3
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-ccCCCChhHHHHHHHHHHccCChHHH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-RIRSPKVTHHALMVSVLARAGLFDEA 81 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-~g~~p~~~~~~~li~~~~~~g~~~~A 81 (282)
.+-.+...|.+|+.+++.++. .... +--|.-+-+-|++.|+++.|.++|- .+ .++--|++|+++|++++|
T Consensus 740 eaai~akew~kai~ildniqd-qk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQD-QKTA--SGYYGEIADHYANKGDFEIAEELFTEAD------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhh-hccc--cccchHHHHHhccchhHHHHHHHHHhcc------hhHHHHHHHhccccHHHH
Confidence 445667788899999998877 4332 2346777788999999999999998 33 456678999999999999
Q ss_pred HHHHHhcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHH
Q 043686 82 RIFIQEYHMERY--PEVLRALLEGCRIHVQVKTGKRVID 118 (282)
Q Consensus 82 ~~l~~~m~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~ 118 (282)
.++-.+.. .|. ...|-+-..-.-++|++.+|+++|-
T Consensus 811 ~kla~e~~-~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 811 FKLAEECH-GPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHhc-CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 99988855 443 5566666666778888877777654
No 139
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.0089 Score=52.74 Aligned_cols=142 Identities=14% Similarity=0.069 Sum_probs=88.0
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChh----HHHHHHHHHHccCCh
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVT----HHALMVSVLARAGLF 78 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~----~~~~li~~~~~~g~~ 78 (282)
.+-.++...|..+|--.....-++-|+.-..++-+.+...|+.++|...|+ ..+.|+.+ .|..|+. +.|+.
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~---~eg~~ 282 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLG---QEGGC 282 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHH---hccCH
Confidence 344555566666665555423356667777888888888888888888888 66666533 2333332 23333
Q ss_pred HHHH----------------------------------HHHHhc-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043686 79 DEAR----------------------------------IFIQEY-HMERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCE 122 (282)
Q Consensus 79 ~~A~----------------------------------~l~~~m-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 122 (282)
++.. .+-++- ...|+ +..|-.=-..+.+.|+.++|.=.|+..+.
T Consensus 283 e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 283 EQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred hhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 3322 222221 12232 22232222346677888888888888888
Q ss_pred cCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 123 LKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 123 ~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
+.|.+..+|--|+..|.-.|++.+|.-
T Consensus 363 Lap~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 363 LAPYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred cchhhHHHHHHHHHHHHhhchHHHHHH
Confidence 888777888888888888888888765
No 140
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.71 E-value=0.0023 Score=35.88 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=29.0
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 117 IDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 117 ~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
|++..+++|+++.+|+.|-..|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 566778899999999999999999999999863
No 141
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.67 E-value=0.0068 Score=36.09 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHH
Q 043686 96 VLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLS 135 (282)
Q Consensus 96 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li 135 (282)
+|..+-..|.+.|++++|.++|++..+..|+++..+..|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 6778889999999999999999999999999988877664
No 142
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.65 E-value=0.039 Score=40.80 Aligned_cols=82 Identities=13% Similarity=0.140 Sum_probs=42.7
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCH--HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC----hhHHHHHHHHHHccC
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDP--LTFAAVLHACSTAGMVEEGWLCFN--RIRSPK----VTHHALMVSVLARAG 76 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~--~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~----~~~~~~li~~~~~~g 76 (282)
+-..|+.++|+.+|++-.. .|+.+.. ..+-.+-+.+...|++++|..+++ ..-.|+ ......+-.++...|
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~-~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALA-AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHhcCCHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 4456777777777777666 6655442 233344445556666666666666 111122 111122233455556
Q ss_pred ChHHHHHHHHh
Q 043686 77 LFDEARIFIQE 87 (282)
Q Consensus 77 ~~~~A~~l~~~ 87 (282)
+.++|.+.+-.
T Consensus 90 r~~eAl~~~l~ 100 (120)
T PF12688_consen 90 RPKEALEWLLE 100 (120)
T ss_pred CHHHHHHHHHH
Confidence 66666665544
No 143
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.58 E-value=0.022 Score=46.17 Aligned_cols=111 Identities=18% Similarity=0.203 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHHhcC-----CCHH---HHHHHhh-ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHHHH
Q 043686 28 EIDPLTFAAVLHACSTA-----GMVE---EGWLCFN-RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLR 98 (282)
Q Consensus 28 ~p~~~ty~~ll~a~~~~-----g~~~---~a~~l~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~~~ 98 (282)
..|..+|..+|..+.+. |-++ .|..-.. .|+.-|..+|+.|++.+=| |.+- -..+|+.+- +
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------~ 113 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------M 113 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh--------c
Confidence 45667777777776654 2222 2222222 6777777777777776655 2211 111111110 0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH--hcCCCChhHHHHHHHHHHHcCchh-hhhcccceee
Q 043686 99 ALLEGCRIHVQVKTGKRVIDQLC--ELKPLSAENYIMLSNWYAAEAKWD-VVNQAYSWIE 155 (282)
Q Consensus 99 ~li~~~~~~g~~~~A~~~~~~m~--~~~p~~~~~~~~Li~~y~~~g~~~-~A~~~~~~~~ 155 (282)
-.-.+-+-|.+++++|. ++-|+. .++..|++.+++.+..- +..+..-||+
T Consensus 114 ------hyp~Qq~c~i~lL~qME~~gV~Pd~-Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 114 ------HYPRQQECAIDLLEQMENNGVMPDK-ETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred ------cCcHHHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 00112345666666666 456643 66666666666665432 3333444443
No 144
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.56 E-value=0.023 Score=48.68 Aligned_cols=117 Identities=9% Similarity=0.055 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhh-----ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC--CCCCHHHHHHHHHHH
Q 043686 32 LTFAAVLHACSTAGMVEEGWLCFN-----RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH--MERYPEVLRALLEGC 104 (282)
Q Consensus 32 ~ty~~ll~a~~~~g~~~~a~~l~~-----~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~--~~p~~~~~~~li~~~ 104 (282)
.+|..+++..-+.+.++.|+.+|. ..+..++....+++..+ ..++.+.|.++|+... +..+...|..-|.-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 578889999999888999999999 22334444445555443 3467777999999853 666788899999999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCchhhhhc
Q 043686 105 RIHVQVKTGKRVIDQLCELKPLSA---ENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 105 ~~~g~~~~A~~~~~~m~~~~p~~~---~~~~~Li~~y~~~g~~~~A~~ 149 (282)
.+.++.+.|..+|+.....-|... ..|...++.=.+.|+++.+.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~ 128 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRK 128 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999985544332 478888888888888877766
No 145
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.53 E-value=0.043 Score=40.97 Aligned_cols=81 Identities=15% Similarity=0.253 Sum_probs=66.5
Q ss_pred ChhHHHHHHHHHHccCChHHHHHHHHhc--------------C----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043686 61 KVTHHALMVSVLARAGLFDEARIFIQEY--------------H----MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCE 122 (282)
Q Consensus 61 ~~~~~~~li~~~~~~g~~~~A~~l~~~m--------------~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 122 (282)
|..++.++|-++++.|+++....+++.. + ..|+..+..+++.+|+.+|++..|.++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4578999999999999999999999763 1 458899999999999999999999999999884
Q ss_pred cC--CCChhHHHHHHHHHHHc
Q 043686 123 LK--PLSAENYIMLSNWYAAE 141 (282)
Q Consensus 123 ~~--p~~~~~~~~Li~~y~~~ 141 (282)
.- |....+|..|+......
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHh
Confidence 32 22347888888765444
No 146
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.52 E-value=0.04 Score=53.43 Aligned_cols=147 Identities=7% Similarity=0.005 Sum_probs=90.7
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHH----HHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccC
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLH----ACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAG 76 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~----a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g 76 (282)
++.+-|+.+.|+..|.+..+ +.|+.+.-...|. ..-.+..+..|..++. ....| |++..+.|-..|.-.|
T Consensus 208 Cf~kl~~~~~a~~a~~ralq---Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~ 284 (1018)
T KOG2002|consen 208 CFWKLGMSEKALLAFERALQ---LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKK 284 (1018)
T ss_pred HHHhccchhhHHHHHHHHHh---cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcc
Confidence 44566777777777777665 4554433222222 1222334555555555 33333 4556666777777778
Q ss_pred ChHHHHHHHHhcC----CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHcCchhhhhcc
Q 043686 77 LFDEARIFIQEYH----MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS-AENYIMLSNWYAAEAKWDVVNQA 150 (282)
Q Consensus 77 ~~~~A~~l~~~m~----~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~-~~~~~~Li~~y~~~g~~~~A~~~ 150 (282)
+...++.+...+. ..+- ..+|.-+-.+|...|++++|...|-+..+..|++ +-.+.-|..+|.+.|+++.|..-
T Consensus 285 dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~ 364 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFC 364 (1018)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHH
Confidence 8888777776653 1111 3456667778888888888888888877777766 44455677778888887777764
Q ss_pred cce
Q 043686 151 YSW 153 (282)
Q Consensus 151 ~~~ 153 (282)
|+.
T Consensus 365 fEk 367 (1018)
T KOG2002|consen 365 FEK 367 (1018)
T ss_pred HHH
Confidence 433
No 147
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.019 Score=52.17 Aligned_cols=99 Identities=13% Similarity=-0.001 Sum_probs=59.5
Q ss_pred HHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHH
Q 043686 40 ACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGK 114 (282)
Q Consensus 40 a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~ 114 (282)
+...+|+++.|...|- ..+.| |-+.|+.-..+|.+.|++++|.+=-.+-. ..|+ .-.|+-+-.+..-.|++++|.
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 3445566666666665 44444 45556666666666666666655443322 4566 456666666666666666666
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHH
Q 043686 115 RVIDQLCELKPLSAENYIMLSNWY 138 (282)
Q Consensus 115 ~~~~~m~~~~p~~~~~~~~Li~~y 138 (282)
..|.+-.+.+|++...++-|.+++
T Consensus 91 ~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 91 LAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHhhcCCchHHHHHhHHHhh
Confidence 666666666666666666666665
No 148
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.11 Score=46.20 Aligned_cols=141 Identities=11% Similarity=0.090 Sum_probs=79.2
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHH---HHHHHccC
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALM---VSVLARAG 76 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~l---i~~~~~~g 76 (282)
.+...|++++|.-.|+..+. +.| +...|-.|+..|...|.+++|.-.-. .-+..+..+.+-+ +...--.
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~---Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~- 418 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQM---LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPR- 418 (564)
T ss_pred HHHhccchHHHHHHHHHHHh---cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCch-
Confidence 34567888888888888766 554 45688888888888888888776555 1111122222211 1111111
Q ss_pred ChHHHHHHHHh-cCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 77 LFDEARIFIQE-YHMERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 77 ~~~~A~~l~~~-m~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
--++|.+++++ ..++|+ .-.-+.+-.-+...|..+.+..+++.-....||. ...+.|.+.+.-...+.+|..
T Consensus 419 ~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 419 MREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred hHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHH
Confidence 12455555554 224555 3344444455555566666666666665555533 555556666555555555555
No 149
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.48 E-value=0.012 Score=39.58 Aligned_cols=61 Identities=13% Similarity=0.065 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHhcC-----CC---CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043686 62 VTHHALMVSVLARAGLFDEARIFIQEYH-----ME---RY-PEVLRALLEGCRIHVQVKTGKRVIDQLCE 122 (282)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-----~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 122 (282)
..+|+.+-..|...|++++|++.|++.. .. |+ ..+++.|-..|...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3467777778888888888888777632 22 22 56677777888888888888888877653
No 150
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.47 E-value=0.06 Score=50.21 Aligned_cols=125 Identities=12% Similarity=0.133 Sum_probs=90.1
Q ss_pred CCCCCHHHHHHHHHHHhc--CC---CHHHHHHHhh--ccCCCC-hhHHHHHHHHHHcc--------CChHHHHHHHHhcC
Q 043686 26 SIEIDPLTFAAVLHACST--AG---MVEEGWLCFN--RIRSPK-VTHHALMVSVLARA--------GLFDEARIFIQEYH 89 (282)
Q Consensus 26 g~~p~~~ty~~ll~a~~~--~g---~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~--------g~~~~A~~l~~~m~ 89 (282)
+...|...|...+.|... .+ ..+.|.++|+ ....|| ...|..+..+|... .++..+.+...+..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 355777899999998554 22 3779999999 778887 55666554444322 12344455554421
Q ss_pred ----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686 90 ----MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 90 ----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
...+..+|.++--.....|++++|...++++..++| +..+|..+...|...|+.++|...+
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 123457788776666678999999999999999999 5789999999999999988886533
No 151
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.45 E-value=0.049 Score=39.49 Aligned_cols=73 Identities=12% Similarity=0.096 Sum_probs=41.9
Q ss_pred HHHHHHHccCChHHHHHHHHhcC---C-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHH--hcCCCChhHHH
Q 043686 67 LMVSVLARAGLFDEARIFIQEYH---M-ERYPEVLRALLEGCRIHV--------QVKTGKRVIDQLC--ELKPLSAENYI 132 (282)
Q Consensus 67 ~li~~~~~~g~~~~A~~l~~~m~---~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~--~~~p~~~~~~~ 132 (282)
..|.-+...+++.....+|...+ + .|.+.+||.++.+-++.. .+-+.+.+|+.|. ++.|++ .||+
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~-etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPND-ETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcH-HHHH
Confidence 33444444466666666665554 4 566666666666554442 2335566666666 567744 7777
Q ss_pred HHHHHHHH
Q 043686 133 MLSNWYAA 140 (282)
Q Consensus 133 ~Li~~y~~ 140 (282)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77776654
No 152
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.43 E-value=0.027 Score=47.68 Aligned_cols=92 Identities=11% Similarity=0.066 Sum_probs=76.8
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCHHHH-HHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHH
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDPLTF-AAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDE 80 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty-~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~ 80 (282)
+.+.+++++|+..|.+-.. +.|+-.+| ..=-.||++.|..+.|.+--+ ..+.|. ..+|..|--+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 5688999999999999988 77765554 455568999999999988777 667775 6799999999999999999
Q ss_pred HHHHHHhcC-CCCCHHHHHH
Q 043686 81 ARIFIQEYH-MERYPEVLRA 99 (282)
Q Consensus 81 A~~l~~~m~-~~p~~~~~~~ 99 (282)
|.+.|++.. +.|+-.+|-.
T Consensus 168 A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKS 187 (304)
T ss_pred HHHHHHhhhccCCCcHHHHH
Confidence 999999855 8998666643
No 153
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.39 E-value=0.048 Score=51.70 Aligned_cols=131 Identities=19% Similarity=0.222 Sum_probs=91.2
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDE 80 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~ 80 (282)
.-|+..|+++.|.++|-+--. ++--|..|.+.|+.++|..+-+ .|-......|-+--.-+-+.|++.+
T Consensus 773 dhyan~~dfe~ae~lf~e~~~----------~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~e 842 (1636)
T KOG3616|consen 773 DHYANKGDFEIAEELFTEADL----------FKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAE 842 (1636)
T ss_pred HHhccchhHHHHHHHHHhcch----------hHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhh
Confidence 457788888888888876432 4556778888888888888887 6666667777777777788888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-------------cC--C---------CChhHHHHHHH
Q 043686 81 ARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCE-------------LK--P---------LSAENYIMLSN 136 (282)
Q Consensus 81 A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------------~~--p---------~~~~~~~~Li~ 136 (282)
|++++-... .|+. -|..|-++|..+...++.++--+ ++ . -...-|.+-++
T Consensus 843 aeqlyiti~-~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavn 916 (1636)
T KOG3616|consen 843 AEQLYITIG-EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVN 916 (1636)
T ss_pred hhheeEEcc-CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHH
Confidence 888877766 6663 34566777777766666543210 00 0 01234567888
Q ss_pred HHHHcCchhhhhc
Q 043686 137 WYAAEAKWDVVNQ 149 (282)
Q Consensus 137 ~y~~~g~~~~A~~ 149 (282)
+|-..+.|++|.+
T Consensus 917 myk~s~lw~dayr 929 (1636)
T KOG3616|consen 917 MYKASELWEDAYR 929 (1636)
T ss_pred HhhhhhhHHHHHH
Confidence 8888888888887
No 154
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.38 E-value=0.049 Score=51.63 Aligned_cols=115 Identities=15% Similarity=0.131 Sum_probs=96.0
Q ss_pred HHHHHHHhcCCCHHHHHHHh-h-ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCC
Q 043686 35 AAVLHACSTAGMVEEGWLCF-N-RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQ 109 (282)
Q Consensus 35 ~~ll~a~~~~g~~~~a~~l~-~-~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~ 109 (282)
...-..+.+.+..++|...+ + .++.| ...+|.-....+-..|+.++|.+.|...- +.|| +.+-+++-..+.+.|+
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~ 733 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS 733 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 34455677888888888444 4 66667 45677777788888999999999998865 7887 7889999999999998
Q ss_pred hhHHHH--HHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 110 VKTGKR--VIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 110 ~~~A~~--~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
-.-|.. ++.++.+++|.+...|--|-..+-+.|+.++|-.
T Consensus 734 ~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 734 PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 888888 9999999999999999999999999999998865
No 155
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.38 E-value=0.0063 Score=40.35 Aligned_cols=52 Identities=10% Similarity=0.107 Sum_probs=47.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686 102 EGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 102 ~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
..|.+.+++++|.++++.+..+.|+++..|.....+|.+.|++++|.+.++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~ 54 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLER 54 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHH
Confidence 5688999999999999999999999999999999999999999999775554
No 156
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.33 E-value=0.029 Score=45.56 Aligned_cols=97 Identities=13% Similarity=0.138 Sum_probs=70.4
Q ss_pred hhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHH
Q 043686 6 SLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFI 85 (282)
Q Consensus 6 ~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 85 (282)
.+.|+++=-...++.|.+ .|+.-|..+|+.||+.+=+ |.+ .|......... -| -.+-+-|.+++
T Consensus 63 ~RRGHVeFI~aAL~~M~e-fgv~kDL~~Y~~LLDvFPK-g~f-----------vp~n~fQ~~F~-hy--p~Qq~c~i~lL 126 (228)
T PF06239_consen 63 RRRGHVEFIYAALKKMDE-FGVEKDLEVYKALLDVFPK-GKF-----------VPRNFFQAEFM-HY--PRQQECAIDLL 126 (228)
T ss_pred CCcChHHHHHHHHHHHHH-cCCcccHHHHHHHHHhCCC-CCc-----------ccccHHHHHhc-cC--cHHHHHHHHHH
Confidence 356888888889999999 9999999999999998776 332 23222222222 12 23667899999
Q ss_pred HhcC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 86 QEYH---MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 86 ~~m~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
++|. +.||..|+..|+..+++.+. +.+-+.+|.
T Consensus 127 ~qME~~gV~Pd~Et~~~ll~iFG~~s~---p~~K~~rmm 162 (228)
T PF06239_consen 127 EQMENNGVMPDKETEQMLLNIFGRKSH---PMKKYRRMM 162 (228)
T ss_pred HHHHHcCCCCcHHHHHHHHHHhccccH---HHHHHHHHH
Confidence 9997 88999999999999966654 444455443
No 157
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.04 Score=47.89 Aligned_cols=147 Identities=12% Similarity=0.050 Sum_probs=101.4
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHH-HHhcC----CCHHHHHHHhh----ccCCCChh-HHHHHHHHHH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLH-ACSTA----GMVEEGWLCFN----RIRSPKVT-HHALMVSVLA 73 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~-a~~~~----g~~~~a~~l~~----~g~~p~~~-~~~~li~~~~ 73 (282)
=|.+.+++.+|..+.+++.- ..|-......++. ++++. ..++.|.+.|. .+...|.. ---++-..+.
T Consensus 294 YyL~q~dVqeA~~L~Kdl~P---ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF 370 (557)
T KOG3785|consen 294 YYLNQNDVQEAISLCKDLDP---TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF 370 (557)
T ss_pred eecccccHHHHHHHHhhcCC---CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence 36788999999999888643 5565555555544 23332 23667888887 44444433 3346666666
Q ss_pred ccCChHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHH-HHHHHHHHcCchhhhhc
Q 043686 74 RAGLFDEARIFIQEYH---MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYI-MLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 74 ~~g~~~~A~~l~~~m~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~-~Li~~y~~~g~~~~A~~ 149 (282)
-.-++|++.-.++.+. ..-|...|| +..+++-.|+..+|+++|-...+.+-.+..+|- .|.+.|.++++..-|+.
T Consensus 371 L~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHH
Confidence 6678899888888876 345566666 788899999999999999888754423446664 56688999999888887
Q ss_pred cccee
Q 043686 150 AYSWI 154 (282)
Q Consensus 150 ~~~~~ 154 (282)
.+-.+
T Consensus 450 ~~lk~ 454 (557)
T KOG3785|consen 450 MMLKT 454 (557)
T ss_pred HHHhc
Confidence 55443
No 158
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.26 E-value=0.065 Score=45.42 Aligned_cols=96 Identities=10% Similarity=0.073 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCCh----hHHHHHHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHH
Q 043686 32 LTFAAVLHACSTAGMVEEGWLCFN--RIRSPKV----THHALMVSVLARAGLFDEARIFIQEYH-MERY----PEVLRAL 100 (282)
Q Consensus 32 ~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~l 100 (282)
..|..-+....+.|++++|...|+ ....|+. ..+-.+...|...|++++|...|+.+. ..|+ ...+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 355555555566688888888887 4444543 356677778888888888888887763 2233 3445555
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686 101 LEGCRIHVQVKTGKRVIDQLCELKPLS 127 (282)
Q Consensus 101 i~~~~~~g~~~~A~~~~~~m~~~~p~~ 127 (282)
...|...|+.++|.++|++.....|++
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 666777888888888888888777754
No 159
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.23 E-value=0.018 Score=51.79 Aligned_cols=64 Identities=8% Similarity=-0.038 Sum_probs=54.9
Q ss_pred ChhHHHHHHHHHHccCChHHHHHHHHh-cCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 043686 61 KVTHHALMVSVLARAGLFDEARIFIQE-YHMERYP----EVLRALLEGCRIHVQVKTGKRVIDQLCELK 124 (282)
Q Consensus 61 ~~~~~~~li~~~~~~g~~~~A~~l~~~-m~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 124 (282)
+...++.+..+|.+.|++++|...|++ +.+.||. .+|+.+-.+|.+.|+.++|.+.+++..++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 366788999999999999999999988 4478873 468999999999999999999999998763
No 160
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.12 E-value=0.1 Score=52.77 Aligned_cols=144 Identities=10% Similarity=0.054 Sum_probs=113.7
Q ss_pred cCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHHHHHHHccCChHHHHHH
Q 043686 8 HGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALMVSVLARAGLFDEARIF 84 (282)
Q Consensus 8 ~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~l 84 (282)
.|.-+...++|++..+ . +. -...|..|..-|.+.+..++|-++++ ..+.-...+|...++.+-+..+-+.|..+
T Consensus 1510 yG~eesl~kVFeRAcq-y-cd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~l 1586 (1710)
T KOG1070|consen 1510 YGTEESLKKVFERACQ-Y-CD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAAREL 1586 (1710)
T ss_pred hCcHHHHHHHHHHHHH-h-cc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHH
Confidence 4556777888988876 2 22 23568889999999999999999999 44555678899999999999999999999
Q ss_pred HHh-cCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccccee
Q 043686 85 IQE-YHMERY---PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWI 154 (282)
Q Consensus 85 ~~~-m~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~ 154 (282)
+.+ |++-|. +..-.-.+.-=.+.|+.+++..+|+....-.|.-...|+..|++=.+.|+.+.++.+|++.
T Consensus 1587 L~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1587 LKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred HHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 987 445554 2233333344467799999999999998888887889999999999999999999888775
No 161
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.04 E-value=0.042 Score=46.58 Aligned_cols=92 Identities=9% Similarity=-0.031 Sum_probs=71.8
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHH---HH
Q 043686 62 VTHHALMVSVLARAGLFDEARIFIQEYH-MERYP----EVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENY---IM 133 (282)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~---~~ 133 (282)
...|..-+..+.+.|++++|...|+.+. ..|+. .++-.+...|...|++++|...|+.+....|+++... --
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3457777777777899999999999965 45653 5778888999999999999999999998877654444 44
Q ss_pred HHHHHHHcCchhhhhcccce
Q 043686 134 LSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 134 Li~~y~~~g~~~~A~~~~~~ 153 (282)
+...|.+.|+.++|...+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~ 242 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQ 242 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 46668788888888775544
No 162
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.02 E-value=0.17 Score=48.94 Aligned_cols=133 Identities=18% Similarity=0.086 Sum_probs=106.6
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHh--cCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACS--TAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD 79 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~--~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~ 79 (282)
....++...|+....+..+ =-||. .|..+++|+. +.|+.++|..+++ .+..| |..|..++..+|...|+.|
T Consensus 19 ~ld~~qfkkal~~~~kllk---k~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLK---KHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHH---HCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence 4457888999999998766 23665 4666777655 7899999999999 55555 6889999999999999999
Q ss_pred HHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 043686 80 EARIFIQEYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAE 141 (282)
Q Consensus 80 ~A~~l~~~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~ 141 (282)
+|..+++... ..|+..-...+-.+|.|.+++.+-.++--++-+..|.++..+=+.++.+...
T Consensus 95 ~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs 157 (932)
T KOG2053|consen 95 EAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQS 157 (932)
T ss_pred HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHh
Confidence 9999999864 6788888888999999999998877777677677887766666677766554
No 163
>PRK15331 chaperone protein SicA; Provisional
Probab=96.01 E-value=0.1 Score=40.50 Aligned_cols=99 Identities=12% Similarity=0.076 Sum_probs=75.5
Q ss_pred ccCCCCh-hHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHH
Q 043686 56 RIRSPKV-THHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYI 132 (282)
Q Consensus 56 ~g~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ 132 (282)
.|++++. ...-+.---+-..|++++|+.+|.-.- ..| |..-|..|-.+|-..+++++|...|....-+.++|+..+-
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 4666652 222334444557899999999999854 344 4556788888888899999999999998877777777777
Q ss_pred HHHHHHHHcCchhhhhccccee
Q 043686 133 MLSNWYAAEAKWDVVNQAYSWI 154 (282)
Q Consensus 133 ~Li~~y~~~g~~~~A~~~~~~~ 154 (282)
-+-..|...|+.+.|...|...
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a 131 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELV 131 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHH
Confidence 8888999999999998876654
No 164
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.00 E-value=0.21 Score=41.83 Aligned_cols=110 Identities=13% Similarity=0.090 Sum_probs=79.4
Q ss_pred HHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCCCC-HHHHHHHHHHH----HhcCChhHH
Q 043686 39 HACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERY-PEVLRALLEGC----RIHVQVKTG 113 (282)
Q Consensus 39 ~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~-~~~~~~li~~~----~~~g~~~~A 113 (282)
..|.+.|++++|......+- +......=+..+-|..++|-|++.+++|. .-| -.|.+-|-+++ ...+.+.+|
T Consensus 116 ~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq-~ided~tLtQLA~awv~la~ggek~qdA 192 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQ-QIDEDATLTQLAQAWVKLATGGEKIQDA 192 (299)
T ss_pred HHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHhccchhhhhH
Confidence 35889999999999998433 23333334455667788999999999998 333 44555444444 334668999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686 114 KRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 114 ~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
.-+|++|.+-.|+++.+-+-+.......|++++|..+.
T Consensus 193 fyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL 230 (299)
T KOG3081|consen 193 FYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLL 230 (299)
T ss_pred HHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence 99999999744447788888888888889988887644
No 165
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.98 E-value=0.11 Score=48.43 Aligned_cols=168 Identities=11% Similarity=0.014 Sum_probs=108.9
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHH-Hhc-CCCHHHHHHHhh--------------------------
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHA-CST-AGMVEEGWLCFN-------------------------- 55 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a-~~~-~g~~~~a~~l~~-------------------------- 55 (282)
-+.+.|++++|..+|..+.. --||..-|.-.+.. +.+ .+..+....+|.
T Consensus 228 l~~kl~~lEeA~~~y~~Ll~---rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~ 304 (700)
T KOG1156|consen 228 LLMKLGQLEEAVKVYRRLLE---RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELK 304 (700)
T ss_pred HHHHHhhHHhHHHHHHHHHh---hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhH
Confidence 35678999999999999987 45888877776654 433 333333335554
Q ss_pred ------------ccCCCChhHHHHHHHHHHccCChHHHHHHHHhc----C------------C-CCCHHHH--HHHHHHH
Q 043686 56 ------------RIRSPKVTHHALMVSVLARAGLFDEARIFIQEY----H------------M-ERYPEVL--RALLEGC 104 (282)
Q Consensus 56 ------------~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m----~------------~-~p~~~~~--~~li~~~ 104 (282)
.|+.| ++..+...|-.-...+--+++.-++ . + .|....| --++..|
T Consensus 305 ~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~ 381 (700)
T KOG1156|consen 305 EIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHY 381 (700)
T ss_pred HHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHH
Confidence 22222 4444444443322333222222222 1 1 4554444 4567779
Q ss_pred HhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecCeEEEEecCC-----CCCCChHHHH
Q 043686 105 RIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGD-----VSCPRSEGIF 177 (282)
Q Consensus 105 ~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~a~ 177 (282)
-+.|+++.|+..++...+..|.-+.-|.+=.+++...|.+++|...++....-+..+.+|++- .+..+.++|.
T Consensus 382 D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~ 459 (700)
T KOG1156|consen 382 DKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAE 459 (700)
T ss_pred HHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHH
Confidence 999999999999999999888767777777899999999999988776655555555555532 2356677776
No 166
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.95 E-value=0.16 Score=38.70 Aligned_cols=57 Identities=21% Similarity=0.277 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686 95 EVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 95 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
.+...++..+...|++++|.++.+.+...+|.+...|..||.+|...|+..+|.+.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y 119 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVY 119 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 356667777888889999999999888888888888889999998888877775443
No 167
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=95.87 E-value=0.095 Score=51.23 Aligned_cols=141 Identities=10% Similarity=0.073 Sum_probs=104.6
Q ss_pred hHHHHHHHHHhHHhCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHH
Q 043686 11 RELGLSLFSELEKKSSIEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQ 86 (282)
Q Consensus 11 ~~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~ 86 (282)
...|+..|-+-.+ +.|+- ..|+.|-.-|...-+...|+..|+ ..+.|+ .....+..+.|++..+++.|..+.-
T Consensus 474 ~~~al~ali~alr---ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALR---LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHh---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 5667766666554 33443 467778778888778888888888 667774 6678899999999999999998843
Q ss_pred hcC-CCCC-HHHHHHHHHH--HHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccccee
Q 043686 87 EYH-MERY-PEVLRALLEG--CRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWI 154 (282)
Q Consensus 87 ~m~-~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~ 154 (282)
.-. ..|- ...||.+-.| |-+.++..+|..-|+......|.+...|..|..+|-.+|+..-|.++|+..
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 322 1221 3344444443 777788888888888888888988888999999999999999998888554
No 168
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.15 Score=43.35 Aligned_cols=105 Identities=12% Similarity=0.061 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHcc--C-ChHHHHHHHHhcC-CCCC-HHHHHHHH
Q 043686 30 DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARA--G-LFDEARIFIQEYH-MERY-PEVLRALL 101 (282)
Q Consensus 30 ~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~--g-~~~~A~~l~~~m~-~~p~-~~~~~~li 101 (282)
|...|-.|-.+|.+.|+.+.|..-|. ..+.| |...+..+-.++... + ...+|.++|+++- .+|+ +.+-.-|-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 44556666666666666666666665 33333 233333333333221 1 2335666666643 3443 44444455
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHH
Q 043686 102 EGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLS 135 (282)
Q Consensus 102 ~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li 135 (282)
..+...|++.+|...++.|....|.+ ..+..+|
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL~~lp~~-~~rr~~i 267 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLLDLLPAD-DPRRSLI 267 (287)
T ss_pred HHHHHcccHHHHHHHHHHHHhcCCCC-CchHHHH
Confidence 55666666666666666666555544 4444444
No 169
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.11 Score=45.25 Aligned_cols=88 Identities=15% Similarity=0.032 Sum_probs=45.7
Q ss_pred HHHHHhcCCCHHHHHHHhh--ccCC-CChhHHHH-HHHHHHccCChHHHHHHHHhcCCCCC-HHHHHHHHH-HHHhcCCh
Q 043686 37 VLHACSTAGMVEEGWLCFN--RIRS-PKVTHHAL-MVSVLARAGLFDEARIFIQEYHMERY-PEVLRALLE-GCRIHVQV 110 (282)
Q Consensus 37 ll~a~~~~g~~~~a~~l~~--~g~~-p~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~p~-~~~~~~li~-~~~~~g~~ 110 (282)
+-.|.+..|+..+|.++|- .|.. .|..+|.+ |-.+|.++++..-|++++-++. .|. ..+.--||. -|.+.+.+
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~-t~~e~fsLLqlIAn~CYk~~eF 477 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN-TPSERFSLLQLIANDCYKANEF 477 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666665 3333 34455543 3355566666666666665555 332 233322332 35555665
Q ss_pred hHHHHHHHHHHhcCC
Q 043686 111 KTGKRVIDQLCELKP 125 (282)
Q Consensus 111 ~~A~~~~~~m~~~~p 125 (282)
--|-+.|++...++|
T Consensus 478 yyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 478 YYAAKAFDELEILDP 492 (557)
T ss_pred HHHHHhhhHHHccCC
Confidence 556666666555555
No 170
>PLN02789 farnesyltranstransferase
Probab=95.78 E-value=0.22 Score=43.55 Aligned_cols=122 Identities=6% Similarity=-0.098 Sum_probs=93.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccC-ChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHh
Q 043686 33 TFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAG-LFDEARIFIQEYH-MERY-PEVLRALLEGCRI 106 (282)
Q Consensus 33 ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g-~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~ 106 (282)
+++.+-..+...++.++|..+.+ ..+.|+ ..+|+..-..+.+.| ++++|.+.++++. ..|+ ..+|+.---.+.+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~ 118 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH
Confidence 44455556667788999999988 566674 456666666777777 6899999998865 4554 6788877666667
Q ss_pred cCCh--hHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccccee
Q 043686 107 HVQV--KTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWI 154 (282)
Q Consensus 107 ~g~~--~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~ 154 (282)
.|+. +++..+++++.+.+|.+..+|+-..-.+.+.|++++|...++.+
T Consensus 119 l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~ 168 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQL 168 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7763 77899999999999999999999888888999999998855443
No 171
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.31 Score=40.58 Aligned_cols=129 Identities=14% Similarity=0.136 Sum_probs=66.5
Q ss_pred hcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHH-HhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHH
Q 043686 7 LHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHA-CSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEAR 82 (282)
Q Consensus 7 ~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a-~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~ 82 (282)
..|+.+.|...++++.. . + |++.--..|=.. +-..|+.++|.++++ ..-.| |.++|---|-..--.|+--+|.
T Consensus 64 d~~~~~lAq~C~~~L~~-~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aI 140 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRD-R-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAI 140 (289)
T ss_pred HhcchHHHHHHHHHHHH-h-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHH
Confidence 35566666666666554 1 2 443222221111 222456666666666 22223 4555554444444445555555
Q ss_pred HHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686 83 IFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY 138 (282)
Q Consensus 83 ~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y 138 (282)
+-+.+.- +.-|...|.-|-.-|...|++++|.-.++++.=+.|.++..+--+.+.+
T Consensus 141 k~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~ 198 (289)
T KOG3060|consen 141 KELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVL 198 (289)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 5555432 4456666666666666666666666666666666665544444444443
No 172
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.72 E-value=0.13 Score=44.96 Aligned_cols=106 Identities=8% Similarity=-0.036 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 043686 63 THHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEA 142 (282)
Q Consensus 63 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g 142 (282)
.+.+.-|.-+...|+...|.++-++.+ .||..-|..-|.+|+..++|++-.++... +-.| +-|-.++..+.+.|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsP---IGyepFv~~~~~~~ 251 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK-VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSP---IGYEPFVEACLKYG 251 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCC---CChHHHHHHHHHCC
Confidence 344444555666788888888888888 68888888888888888888866654332 2223 77888888888888
Q ss_pred chhhhhcccceeeecCeEEEEecCCCCCCChHHHHH
Q 043686 143 KWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFW 178 (282)
Q Consensus 143 ~~~~A~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~ 178 (282)
...+|......++.... +..|.+.|.+.+|.+
T Consensus 252 ~~~eA~~yI~k~~~~~r----v~~y~~~~~~~~A~~ 283 (319)
T PF04840_consen 252 NKKEASKYIPKIPDEER----VEMYLKCGDYKEAAQ 283 (319)
T ss_pred CHHHHHHHHHhCChHHH----HHHHHHCCCHHHHHH
Confidence 88888775555443222 333566777777763
No 173
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.65 E-value=0.23 Score=46.48 Aligned_cols=221 Identities=12% Similarity=-0.024 Sum_probs=126.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhh-----ccCCCChhHHHHHH------HHHHccCChHHHHHHHHhcC-CCCC-HHHHH
Q 043686 32 LTFAAVLHACSTAGMVEEGWLCFN-----RIRSPKVTHHALMV------SVLARAGLFDEARIFIQEYH-MERY-PEVLR 98 (282)
Q Consensus 32 ~ty~~ll~a~~~~g~~~~a~~l~~-----~g~~p~~~~~~~li------~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~ 98 (282)
..|..+.-+.--.|+...|..+.+ ..-.|+...|.-.. ....++|.+++|.+.+..-+ ..-| +..--
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e 223 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEE 223 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhh
Confidence 356666666666788888888888 22246666665333 33467888999998887765 1223 33334
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhh-ccc---ceeeecCeEEEEecCCCCCCChH
Q 043686 99 ALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVN-QAY---SWIEFRNKVHVFGTGDVSCPRSE 174 (282)
Q Consensus 99 ~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~-~~~---~~~~~~~~~~~~i~~~~~~~~~~ 174 (282)
+-..-+.+.+++++|..++.......|++...|-.+..++++.-+..++. .++ +....+...-.-+.-...+| +
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~--e 301 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNG--E 301 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCc--c
Confidence 55566889999999999999999999999888888888887554444444 222 22222111100111111122 3
Q ss_pred HHHHHHHHHHHHHHhCCCccCCCcccccchhhhhhhhhhhhHHHHHH--hhhccC------------CCCC----eEEEe
Q 043686 175 GIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGHSEILALS--FGLIST------------QVGA----TIHVT 236 (282)
Q Consensus 175 ~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~------------~~~~----~~~~~ 236 (282)
+-.+.+...+..+.+.|+.|--..+.++...-.|.. ..++++.. ..+.++ ++++ ...+.
T Consensus 302 el~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~---~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~la 378 (700)
T KOG1156|consen 302 ELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVA---FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLA 378 (700)
T ss_pred hhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhH---HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHH
Confidence 334445688888889997654444333322211222 12222211 112211 1111 11245
Q ss_pred eccccccchHHHHHHHHHhhc
Q 043686 237 KNLRMRHICHDFAKAISKMVE 257 (282)
Q Consensus 237 ~~~~~~g~~~~a~~~~~~m~~ 257 (282)
..+-++|+++.|..+++.-.+
T Consensus 379 qh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 379 QHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred HHHHHcccHHHHHHHHHHHhc
Confidence 556688888888888876554
No 174
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.55 E-value=0.95 Score=36.13 Aligned_cols=122 Identities=9% Similarity=0.029 Sum_probs=81.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHhh---ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhc-CCCCC---HHHH
Q 043686 26 SIEIDPLTFAAVLHACSTAGMVEEGWLCFN---RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEY-HMERY---PEVL 97 (282)
Q Consensus 26 g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m-~~~p~---~~~~ 97 (282)
...|++-.---|-.+..+.|+..||...|. .|+-. |....-.+-.+....+++..|...++.. ...|+ ..+-
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 355776666677788888888888888888 66555 4556666777777778888888888774 22222 1123
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhh
Q 043686 98 RALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVN 148 (282)
Q Consensus 98 ~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~ 148 (282)
-.+-..|...|...+|+..|+.....-| ++..-.---.++.+.|+.++|.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHH
Confidence 3344567778888888888888887766 3333333445566777766653
No 175
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.55 E-value=0.22 Score=48.57 Aligned_cols=132 Identities=11% Similarity=0.108 Sum_probs=84.8
Q ss_pred hhhcCChHHHHHHHHHhHHhCC-CCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHH--HHHHHHHHccCCh
Q 043686 5 YSLHGQRELGLSLFSELEKKSS-IEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHH--ALMVSVLARAGLF 78 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g-~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~--~~li~~~~~~g~~ 78 (282)
|.-.|++..++.+...+.. .- ..| -..+|=-+-.++-..|++++|...|- .+..||-+++ --|...|-+.|++
T Consensus 280 fyfK~dy~~v~~la~~ai~-~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dl 358 (1018)
T KOG2002|consen 280 FYFKKDYERVWHLAEHAIK-NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDL 358 (1018)
T ss_pred HhhcccHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchH
Confidence 4556788888888887766 22 111 12346666777778888888888887 6666665444 4677888888888
Q ss_pred HHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcC----ChhHHHHHHHHHHhcCCCChhHHHHHHHH
Q 043686 79 DEARIFIQEYH-MERY-PEVLRALLEGCRIHV----QVKTGKRVIDQLCELKPLSAENYIMLSNW 137 (282)
Q Consensus 79 ~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~p~~~~~~~~Li~~ 137 (282)
+.|...|+..- ..|| ..|...|-.-|...+ ..++|..+..+..+..|.++..|..+..+
T Consensus 359 e~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 359 EESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 88888888753 4565 555555655566554 45566666666555566665555543333
No 176
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.54 E-value=0.073 Score=40.55 Aligned_cols=58 Identities=19% Similarity=0.217 Sum_probs=47.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 64 HHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 64 ~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
....++..+...|++++|.++.+... ..| |...|-.+|.+|.+.|+..+|.++|+.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 44566677788999999999999865 555 58899999999999999999999999986
No 177
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=95.52 E-value=0.14 Score=50.43 Aligned_cols=116 Identities=10% Similarity=0.059 Sum_probs=85.6
Q ss_pred ChhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHH-HHhcCCCHHHHHHHhh-cc-CCCCh---------------
Q 043686 1 MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLH-ACSTAGMVEEGWLCFN-RI-RSPKV--------------- 62 (282)
Q Consensus 1 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~-a~~~~g~~~~a~~l~~-~g-~~p~~--------------- 62 (282)
||..|-..+++++|.++.++-.+ ..|+...+-.+.. .+.+.++.+++..+ . .+ +..+.
T Consensus 37 Li~~~~~~~~~deai~i~~~~l~---~~P~~i~~yy~~G~l~~q~~~~~~~~lv-~~l~~~~~~~~~~~ve~~~~~i~~~ 112 (906)
T PRK14720 37 LIDAYKSENLTDEAKDICEEHLK---EHKKSISALYISGILSLSRRPLNDSNLL-NLIDSFSQNLKWAIVEHICDKILLY 112 (906)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH---hCCcceehHHHHHHHHHhhcchhhhhhh-hhhhhcccccchhHHHHHHHHHHhh
Confidence 46778899999999999997666 5677654444333 45566777766666 5 11 22222
Q ss_pred ----hHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 63 ----THHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 63 ----~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
..+-+|..+|-+.|+.++|.+++++.- ..|+ ..+.|.+-..|... ++++|.+++.+..
T Consensus 113 ~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 113 GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 556677788888899999999999965 6664 88888888888888 8888888888764
No 178
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.46 E-value=0.13 Score=46.45 Aligned_cols=60 Identities=10% Similarity=-0.083 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCCh----hHHHHHHHHHHccCChHHHHHHHHhcC
Q 043686 30 DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKV----THHALMVSVLARAGLFDEARIFIQEYH 89 (282)
Q Consensus 30 ~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~ 89 (282)
+...++.+-.+|.+.|++++|...|+ ..+.|+. ..|..+-.+|.+.|++++|.+.+++..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45688888889999999999999999 7778874 358999999999999999999998854
No 179
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.43 E-value=0.64 Score=42.80 Aligned_cols=137 Identities=9% Similarity=0.048 Sum_probs=97.8
Q ss_pred hcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhhcc--CCCChhHH-HHHHHHHHccCChHHHH
Q 043686 7 LHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFNRI--RSPKVTHH-ALMVSVLARAGLFDEAR 82 (282)
Q Consensus 7 ~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~~g--~~p~~~~~-~~li~~~~~~g~~~~A~ 82 (282)
+..=++-|..+|.+.++ .+..| ++..++++|.-+|. ++.+.|.++|+.| --+|...| ..-++-+...++-+.|.
T Consensus 378 R~eGlkaaR~iF~kaR~-~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R 455 (656)
T KOG1914|consen 378 RAEGLKAARKIFKKARE-DKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNAR 455 (656)
T ss_pred HhhhHHHHHHHHHHHhh-ccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHH
Confidence 44456778899999988 88888 77788888876664 6778899999933 23444444 58888888899999999
Q ss_pred HHHHhcC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHcCchh
Q 043686 83 IFIQEYH---MERY--PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS----AENYIMLSNWYAAEAKWD 145 (282)
Q Consensus 83 ~l~~~m~---~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~----~~~~~~Li~~y~~~g~~~ 145 (282)
.+|++.. ..|| ..+|..+|+-=.+.|++..+.++-+++...-|.+ -.+-..+++.|.-.+...
T Consensus 456 ~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 456 ALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred HHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 9998854 3444 6789999998888899999988888877332211 123445667776555533
No 180
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.40 E-value=0.27 Score=42.89 Aligned_cols=106 Identities=16% Similarity=0.174 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhh-ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 043686 32 LTFAAVLHACSTAGMVEEGWLCFN-RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQV 110 (282)
Q Consensus 32 ~ty~~ll~a~~~~g~~~~a~~l~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~ 110 (282)
.+.+..|.-|...|....|..+-. ..+ ||..-|-..|.+|++.++|++-+++...= ...+-|-..+..|.+.|+.
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~sk---KsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFKV-PDKRFWWLKIKALAENKDWDELEKFAKSK---KSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhCC---CCCCChHHHHHHHHHCCCH
Confidence 355666777778888888888877 555 78888889999999999999888876542 2347788889999999999
Q ss_pred hHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcc
Q 043686 111 KTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQA 150 (282)
Q Consensus 111 ~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~ 150 (282)
.+|..+...+ | . .--+.+|.++|++.+|.+.
T Consensus 254 ~eA~~yI~k~----~----~-~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 254 KEASKYIPKI----P----D-EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHhC----C----h-HHHHHHHHHCCCHHHHHHH
Confidence 9888887762 2 1 5567788899999888774
No 181
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.34 E-value=0.85 Score=38.19 Aligned_cols=143 Identities=8% Similarity=-0.069 Sum_probs=90.9
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCHH-HH---HHHHHHHhcCCCHHHHHHHhh--ccCCCC--hhHHHHHHHHHHc--
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDPL-TF---AAVLHACSTAGMVEEGWLCFN--RIRSPK--VTHHALMVSVLAR-- 74 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~-ty---~~ll~a~~~~g~~~~a~~l~~--~g~~p~--~~~~~~li~~~~~-- 74 (282)
+.+.|++++|++.|++... .-|+.. .- -.+..++-+.++.++|...++ ....|+ ..-|.-.+.+.+.
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~---~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDN---RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 4568999999999999987 334442 22 234567889999999999998 333333 2233333444331
Q ss_pred c---------------CChH---HHHHHHHhcC-CCCC------HHH-----HH-------HHHHHHHhcCChhHHHHHH
Q 043686 75 A---------------GLFD---EARIFIQEYH-MERY------PEV-----LR-------ALLEGCRIHVQVKTGKRVI 117 (282)
Q Consensus 75 ~---------------g~~~---~A~~l~~~m~-~~p~------~~~-----~~-------~li~~~~~~g~~~~A~~~~ 117 (282)
. .+.. +|.+.|++.. --|| ... -+ .+..-|.+.|.+.-|..-|
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~ 198 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRV 198 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 1 1223 4445555432 2233 111 11 1233488999999999999
Q ss_pred HHHHhcCCCC---hhHHHHHHHHHHHcCchhhhhcc
Q 043686 118 DQLCELKPLS---AENYIMLSNWYAAEAKWDVVNQA 150 (282)
Q Consensus 118 ~~m~~~~p~~---~~~~~~Li~~y~~~g~~~~A~~~ 150 (282)
+.+..--|++ ......|+.+|.+.|..++|...
T Consensus 199 ~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~ 234 (243)
T PRK10866 199 EQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKV 234 (243)
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Confidence 9999766644 34556888999999999988653
No 182
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.30 E-value=0.042 Score=30.31 Aligned_cols=32 Identities=16% Similarity=0.014 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 043686 95 EVLRALLEGCRIHVQVKTGKRVIDQLCELKPL 126 (282)
Q Consensus 95 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~ 126 (282)
.+|..+...|...|++++|+..|++..+++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 57888999999999999999999999999985
No 183
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=95.28 E-value=1.8 Score=37.80 Aligned_cols=180 Identities=11% Similarity=0.012 Sum_probs=121.2
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCH----HH------------HHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDP----LT------------FAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTH 64 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~----~t------------y~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~ 64 (282)
.+.+.|.+++|..=|+.... .. |+. .. ....+..+.-.|+...|.+... ..+.| |...
T Consensus 115 vllK~Gele~A~~DF~~vl~-~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l 191 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQ-HE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASL 191 (504)
T ss_pred hhhhcccHHHHHHHHHHHHh-cC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHH
Confidence 46789999999999999876 32 321 11 1223445566788888888777 66677 7788
Q ss_pred HHHHHHHHHccCChHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHH---H------
Q 043686 65 HALMVSVLARAGLFDEARIFIQEYH-M-ERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYI---M------ 133 (282)
Q Consensus 65 ~~~li~~~~~~g~~~~A~~l~~~m~-~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~---~------ 133 (282)
|-.--++|...|++..|..=++... . .-|..+..-+-.-+.+.|+.+.++...++-.+++|++-..|. .
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHH
Confidence 8889999999999999988776644 2 445677777778899999999999999999999998744433 1
Q ss_pred -HHHH--HHHcCchhhhhc----ccceeee-----cCeEEEEecCCCCCCChHHHHHHHHHHHHH
Q 043686 134 -LSNW--YAAEAKWDVVNQ----AYSWIEF-----RNKVHVFGTGDVSCPRSEGIFWELQSLMKK 186 (282)
Q Consensus 134 -Li~~--y~~~g~~~~A~~----~~~~~~~-----~~~~~~~i~~~~~~~~~~~a~~~~~~l~~~ 186 (282)
|.++ -.+.++|-++.+ +...-|. .+....+..++..-+++.+|+..-.++++-
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~ 336 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI 336 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc
Confidence 2111 223334433333 2221111 122245667788889999998666666653
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.23 E-value=0.22 Score=36.78 Aligned_cols=80 Identities=16% Similarity=0.002 Sum_probs=39.7
Q ss_pred HhcCCCHHHHHHHhh----ccCCCC--hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCC
Q 043686 41 CSTAGMVEEGWLCFN----RIRSPK--VTHHALMVSVLARAGLFDEARIFIQEYH-MERY----PEVLRALLEGCRIHVQ 109 (282)
Q Consensus 41 ~~~~g~~~~a~~l~~----~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~li~~~~~~g~ 109 (282)
+-..|+.++|..+|+ .|+.+. ...+-.+-..|...|+.++|..+|++.. -.|+ ......+--++...|+
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr 90 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGR 90 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC
Confidence 334566666666666 444433 2233345555666666666666665532 1132 1111222234555566
Q ss_pred hhHHHHHHHHH
Q 043686 110 VKTGKRVIDQL 120 (282)
Q Consensus 110 ~~~A~~~~~~m 120 (282)
.++|.+.+-..
T Consensus 91 ~~eAl~~~l~~ 101 (120)
T PF12688_consen 91 PKEALEWLLEA 101 (120)
T ss_pred HHHHHHHHHHH
Confidence 66666665443
No 185
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=95.19 E-value=0.36 Score=45.99 Aligned_cols=122 Identities=16% Similarity=0.100 Sum_probs=96.3
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCHH-HHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDPL-TFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFD 79 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~-ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~ 79 (282)
.+.+.+..++|...+.+... +.|-.+ .|.-.-..+-..|..++|.+.|. .-+.|| +.+-+++-.++-+.|+-.
T Consensus 659 ~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~ 735 (799)
T KOG4162|consen 659 LFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPR 735 (799)
T ss_pred HHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcc
Confidence 45667778888877777654 445443 34333345667899999999999 778886 778999999999999888
Q ss_pred HHHH--HHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh
Q 043686 80 EARI--FIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSA 128 (282)
Q Consensus 80 ~A~~--l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~ 128 (282)
-|.+ ++.++. +.|+ ...|-.|-..+-+.|+.++|.+.|.-..++++.+|
T Consensus 736 la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 736 LAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 7777 888765 7775 78999999999999999999999999987765443
No 186
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.19 E-value=0.046 Score=36.70 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhh--------cc-CCCC-hhHHHHHHHHHHccCChHHHHHHHHh
Q 043686 32 LTFAAVLHACSTAGMVEEGWLCFN--------RI-RSPK-VTHHALMVSVLARAGLFDEARIFIQE 87 (282)
Q Consensus 32 ~ty~~ll~a~~~~g~~~~a~~l~~--------~g-~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~ 87 (282)
.+|+.+-..+...|++++|...|+ .| -.|+ ..+++.|...|.+.|+.++|++.+++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467778888889999999999998 22 1233 56788999999999999999999876
No 187
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.16 E-value=0.95 Score=38.76 Aligned_cols=249 Identities=11% Similarity=0.047 Sum_probs=120.7
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHH-HHHHHHHccCChH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHA-LMVSVLARAGLFD 79 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~-~li~~~~~~g~~~ 79 (282)
-+.+..++++|++++..-.+ -.| +....+.|-..|-...++..|-+.++ .-..|-..-|. ---..+-+++.+.
T Consensus 19 ~lI~d~ry~DaI~~l~s~~E---r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELE---RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHh---cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccH
Confidence 34677788888888877655 235 55566666667777888888888887 44455544443 2234455666677
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeec
Q 043686 80 EARIFIQEYHMERYPEVLRALLEG--CRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFR 157 (282)
Q Consensus 80 ~A~~l~~~m~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~ 157 (282)
+|.++...|.-.|+...-..-+.+ ....+++-.+..+.++..+- ++..+-+......-+.|+.+.|.+.|..-..-
T Consensus 96 DALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gCllykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 96 DALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCLLYKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--CccchhccchheeeccccHHHHHHHHHHHHhh
Confidence 777776666522332222222221 22334444444443333210 11122222333333444444444433221111
Q ss_pred CeEEE-----EecCCCCCCChHHHHHHHHHHHHHHHhCCCc--cCC--Ccccccchhhhhhhhhh-hhHHHHHHhhhccC
Q 043686 158 NKVHV-----FGTGDVSCPRSEGIFWELQSLMKKMEGDSLR--PKP--DFSLHYVDEERKWTQIG-HSEILALSFGLIST 227 (282)
Q Consensus 158 ~~~~~-----~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~--pd~--~t~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~ 227 (282)
+-.+. +-.+.-+.++...|+ ++..++.++|++ |.- ....-.++.-.-..-+. |.--+..++.+.-
T Consensus 174 sGyqpllAYniALaHy~~~qyasAL----k~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa- 248 (459)
T KOG4340|consen 174 SGYQPLLAYNLALAHYSSRQYASAL----KHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA- 248 (459)
T ss_pred cCCCchhHHHHHHHHHhhhhHHHHH----HHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh-
Confidence 11100 001112233444455 666666666664 221 11111111111111111 2222333333221
Q ss_pred CCCCeEEEeeccccccchHHHHHHHHHhhcceEEeecCCccccc
Q 043686 228 QVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHF 271 (282)
Q Consensus 228 ~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 271 (282)
.-+-+-|+.+.|.+.+..|+-|.-..-|+.+.|.+
T Consensus 249 ---------AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~ 283 (459)
T KOG4340|consen 249 ---------AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQ 283 (459)
T ss_pred ---------hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHH
Confidence 11335688899999999999997777788887754
No 188
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.13 E-value=0.36 Score=43.51 Aligned_cols=132 Identities=17% Similarity=0.200 Sum_probs=87.7
Q ss_pred hcCChHHHHHHHHHhHHhCC-CCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHH-HHHHHHHHccCChHHHH
Q 043686 7 LHGQRELGLSLFSELEKKSS-IEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHH-ALMVSVLARAGLFDEAR 82 (282)
Q Consensus 7 ~~g~~~~A~~lf~~m~~~~g-~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~-~~li~~~~~~g~~~~A~ 82 (282)
+..-++.|..+|-+.++ .| +.|++..|+++|.-++. |+...|..+|+ ...-||...| +-.++.+.+.++-+.|.
T Consensus 409 r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~nar 486 (660)
T COG5107 409 RKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENAR 486 (660)
T ss_pred HHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHH
Confidence 44445677778888777 77 66777777777775553 66677788887 2233554444 35666777777888888
Q ss_pred HHHHhcC--CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 043686 83 IFIQEYH--MERY--PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAE 141 (282)
Q Consensus 83 ~l~~~m~--~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~ 141 (282)
.+|+.-. +..+ ..+|-.+|+-=.+-|++..|..+-+.|.++-|.. .+-..+.+.|+-.
T Consensus 487 aLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe-n~~evF~Sry~ik 548 (660)
T COG5107 487 ALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE-NLIEVFTSRYAIK 548 (660)
T ss_pred HHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH-hHHHHHHHHHhhh
Confidence 8887532 3333 5677888877777788888877777777777733 4555555555543
No 189
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.04 E-value=0.77 Score=42.66 Aligned_cols=114 Identities=10% Similarity=-0.019 Sum_probs=81.8
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-ccCCCChhHHHH--HHHHHH--ccC
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-RIRSPKVTHHAL--MVSVLA--RAG 76 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-~g~~p~~~~~~~--li~~~~--~~g 76 (282)
++-+.+.|++++|...-.++.. .+ +-|...+..=+-+..+.+.+++|..+.+ .+. ..+++. +=.+|| +.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~-~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILS-IV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHh-cC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhHHHHHHHHHcc
Confidence 4557789999999999999987 44 3334466666667888999999998887 221 122332 466776 679
Q ss_pred ChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 77 LFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 77 ~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
..|+|...++... +-|..+-.-=-.-+.+.|++++|..+|+...
T Consensus 94 k~Dealk~~~~~~-~~~~~ll~L~AQvlYrl~~ydealdiY~~L~ 137 (652)
T KOG2376|consen 94 KLDEALKTLKGLD-RLDDKLLELRAQVLYRLERYDEALDIYQHLA 137 (652)
T ss_pred cHHHHHHHHhccc-ccchHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999998554 2233344444455889999999999999883
No 190
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.99 E-value=1.1 Score=33.68 Aligned_cols=123 Identities=7% Similarity=-0.007 Sum_probs=77.0
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHH
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEA 81 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A 81 (282)
|..+.+.+.......+++.+.. .+. .+....|.++..|++.. ..+..+.+.. .++.....-.+..+-+.+.++++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~-~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~ 88 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALK-LNS-ENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEA 88 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHc-cCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHH
Confidence 5566667788888888888776 553 56667888888887654 3344444441 13334444567777777777777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 043686 82 RIFIQEYHMERYPEVLRALLEGCRIH-VQVKTGKRVIDQLCELKPLSAENYIMLSNWYAA 140 (282)
Q Consensus 82 ~~l~~~m~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~ 140 (282)
.-++.++. -|.-.++.+... ++++.|.+.+++ +.++..|..++..+..
T Consensus 89 ~~l~~k~~------~~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 89 VELYKKDG------NFKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHhhc------CHHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 77777776 222233333344 677777777664 2344678777776643
No 191
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.79 E-value=0.86 Score=45.61 Aligned_cols=146 Identities=11% Similarity=-0.019 Sum_probs=97.9
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCH----HHHHHHHHHHhcCCCHHHHHHHhh------ccC-CCC--hhHHHHHHHH
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDP----LTFAAVLHACSTAGMVEEGWLCFN------RIR-SPK--VTHHALMVSV 71 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~----~ty~~ll~a~~~~g~~~~a~~l~~------~g~-~p~--~~~~~~li~~ 71 (282)
+...|++++|...+++... .--..+. ...+.+-..+...|++++|...+. ... .+. ..++..+...
T Consensus 462 ~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 462 AINDGDPEEAERLAELALA-ELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHhCCCHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 4578999999999998765 3111121 234455556778999999999988 111 111 3355566777
Q ss_pred HHccCChHHHHHHHHhcC-----C-C---C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCC-ChhHHHHHHH
Q 043686 72 LARAGLFDEARIFIQEYH-----M-E---R-YPEVLRALLEGCRIHVQVKTGKRVIDQLCEL----KPL-SAENYIMLSN 136 (282)
Q Consensus 72 ~~~~g~~~~A~~l~~~m~-----~-~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~p~-~~~~~~~Li~ 136 (282)
+...|++++|...+++.. . . | ...++..+...+...|++++|...+.+.... .|. ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 888999999999987742 1 1 1 2334555666677789999999999988642 221 2344555677
Q ss_pred HHHHcCchhhhhccc
Q 043686 137 WYAAEAKWDVVNQAY 151 (282)
Q Consensus 137 ~y~~~g~~~~A~~~~ 151 (282)
.+...|+.++|...+
T Consensus 621 ~~~~~G~~~~A~~~l 635 (903)
T PRK04841 621 ISLARGDLDNARRYL 635 (903)
T ss_pred HHHHcCCHHHHHHHH
Confidence 888899999887733
No 192
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.74 E-value=2.1 Score=35.76 Aligned_cols=138 Identities=15% Similarity=0.138 Sum_probs=100.8
Q ss_pred cCChHHHHHHHHHhHHh--CC-CCCCHHH-HHHHHHHHhcCCCHHHHHHHhh---ccCCCChh----HHHHHHHHHHccC
Q 043686 8 HGQRELGLSLFSELEKK--SS-IEIDPLT-FAAVLHACSTAGMVEEGWLCFN---RIRSPKVT----HHALMVSVLARAG 76 (282)
Q Consensus 8 ~g~~~~A~~lf~~m~~~--~g-~~p~~~t-y~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~----~~~~li~~~~~~g 76 (282)
..+.++.++++.+|... .| ..|+..+ |--++-|....|+.+.|...++ ..+ |... .+..++. -.|
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lE---a~~ 100 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLE---ATG 100 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHH---Hhh
Confidence 46788888888887644 45 6677653 4555667777788888888887 334 4322 2223333 357
Q ss_pred ChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 77 LFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 77 ~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
+.++|.++++..- -.| |.++|--=+...-..|+--+|.+-+.+-.+.-|.|...|.-|...|...|++++|.-
T Consensus 101 ~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred chhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 8999999998864 345 578887777777777777788888888777778888999999999999999999876
No 193
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.67 E-value=0.3 Score=37.10 Aligned_cols=112 Identities=11% Similarity=0.120 Sum_probs=73.2
Q ss_pred HHccCChHHHHHHHHhcC----CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHcCchh
Q 043686 72 LARAGLFDEARIFIQEYH----MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSA-ENYIMLSNWYAAEAKWD 145 (282)
Q Consensus 72 ~~~~g~~~~A~~l~~~m~----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~-~~~~~Li~~y~~~g~~~ 145 (282)
.-+.|++++|.+.|+.+. ..| ..-+-=.|+.+|.+.+++++|...+++..+++|.++ +-|...+.+++.-...+
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 345789999999999875 222 244566689999999999999999999999999765 45777777766655433
Q ss_pred hhhcccceeeecCeEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccC
Q 043686 146 VVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPK 195 (282)
Q Consensus 146 ~A~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd 195 (282)
.+...+- ..-...+...+|...++.|.++-.++-..||
T Consensus 100 ~~~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 100 GSLQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred hHHhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 3222111 1122334456677555566655544444443
No 194
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.25 Score=41.98 Aligned_cols=93 Identities=14% Similarity=0.152 Sum_probs=74.5
Q ss_pred ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhc-C--ChhHHHHHHHHHHhcCCCChhHHHHHH
Q 043686 61 KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIH-V--QVKTGKRVIDQLCELKPLSAENYIMLS 135 (282)
Q Consensus 61 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~-g--~~~~A~~~~~~m~~~~p~~~~~~~~Li 135 (282)
|...|--|-..|.+.|++++|..-|.+.. +.| |...+..+-.++... | .-.+|..+|+++.+.+|.++.+-..|-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 67889999999999999999999998854 444 477777777764333 2 345799999999999999988888898
Q ss_pred HHHHHcCchhhhhcccce
Q 043686 136 NWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 136 ~~y~~~g~~~~A~~~~~~ 153 (282)
-.+...|++.+|...+..
T Consensus 235 ~~afe~g~~~~A~~~Wq~ 252 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQM 252 (287)
T ss_pred HHHHHcccHHHHHHHHHH
Confidence 999999998888664444
No 195
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.55 E-value=0.12 Score=28.18 Aligned_cols=33 Identities=15% Similarity=0.062 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686 95 EVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS 127 (282)
Q Consensus 95 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~ 127 (282)
..|..+-..|.+.|++++|.+.|++...+.|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 357778888999999999999999999998854
No 196
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.51 E-value=1.4 Score=37.79 Aligned_cols=145 Identities=16% Similarity=0.139 Sum_probs=99.2
Q ss_pred hhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh----ccC-------------CCC-------
Q 043686 6 SLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN----RIR-------------SPK------- 61 (282)
Q Consensus 6 ~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~----~g~-------------~p~------- 61 (282)
.+.|+++.|++=|....+-.|..|- ..||.-+.-|. .|+.+.|..... +|+ -||
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqpl-lAYniALaHy~-~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt 232 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQPL-LAYNLALAHYS-SRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT 232 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCch-hHHHHHHHHHh-hhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch
Confidence 5789999999999987663677775 56887775554 466777776654 111 112
Q ss_pred -hhHHHHHHHH-------HHccCChHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChh
Q 043686 62 -VTHHALMVSV-------LARAGLFDEARIFIQEYH----MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAE 129 (282)
Q Consensus 62 -~~~~~~li~~-------~~~~g~~~~A~~l~~~m~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~ 129 (282)
...-++++.+ +.+.|+++.|.+-+-.|| .+.|.+|...+.-.-. .+++-+..+-+.-..++.|--..
T Consensus 233 ~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~E 311 (459)
T KOG4340|consen 233 LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPE 311 (459)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChH
Confidence 1234455555 467899999999999998 3456677655433322 34555566666666688886679
Q ss_pred HHHHHHHHHHHcCchhhhhcccce
Q 043686 130 NYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 130 ~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
||..|+-.|||..-++-|-.+...
T Consensus 312 TFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhh
Confidence 999999999999999988775544
No 197
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.29 E-value=0.0052 Score=46.79 Aligned_cols=128 Identities=13% Similarity=0.091 Sum_probs=75.7
Q ss_pred ChhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHH
Q 043686 1 MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDE 80 (282)
Q Consensus 1 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~ 80 (282)
+|+.|-+.+.++.....++.+.. .+-.-+....+.++..|++.+..++..++++ ..+..-...++..+-+.|.+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~-~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~~~~yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVK-ENKENNPDLHTLLLELYIKYDPYEKLLEFLK---TSNNYDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHH-TSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---SSSSS-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHh-cccccCHHHHHHHHHHHHhcCCchHHHHHcc---cccccCHHHHHHHHHhcchHHH
Confidence 46677778888888888888887 6656667788888888888887778888777 1111222346666666677777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCc
Q 043686 81 ARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAK 143 (282)
Q Consensus 81 A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~ 143 (282)
|.-++.++. . |...+..+.+.++++.|.+.+.+. +++..|..+++.|...+.
T Consensus 89 a~~Ly~~~~-~-----~~~al~i~~~~~~~~~a~e~~~~~-----~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLG-N-----HDEALEILHKLKDYEEAIEYAKKV-----DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCT-T-----HTTCSSTSSSTHCSCCCTTTGGGC-----SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcc-c-----HHHHHHHHHHHccHHHHHHHHHhc-----CcHHHHHHHHHHHHhcCc
Confidence 777666654 1 000111122334444444332211 234677777777655443
No 198
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=94.09 E-value=1.3 Score=38.68 Aligned_cols=141 Identities=17% Similarity=0.146 Sum_probs=101.4
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHH---HHhcCCCHHHHHHHhh--ccCCCChhHH-HHHHHHHHccCC
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLH---ACSTAGMVEEGWLCFN--RIRSPKVTHH-ALMVSVLARAGL 77 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~---a~~~~g~~~~a~~l~~--~g~~p~~~~~-~~li~~~~~~g~ 77 (282)
.+.-.|++.+|+.-|....+ -|+..|-++.. .|...|+..-|..=+. ..++||-..- ----..+-|.|.
T Consensus 47 ~lla~~Q~sDALt~yHaAve-----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 47 ELLARGQLSDALTHYHAAVE-----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHc-----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 35567889999999998776 45556666554 4556666666666565 5677763211 122345678999
Q ss_pred hHHHHHHHHhcC-CCCCH----HH------------HHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 043686 78 FDEARIFIQEYH-MERYP----EV------------LRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAA 140 (282)
Q Consensus 78 ~~~A~~l~~~m~-~~p~~----~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~ 140 (282)
++.|..=|+... ..|+. .. .-..+..+...|+...|.+....+.++.|=++..|..=.++|..
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh
Confidence 999999998853 44531 11 22345567778999999999999999999888888888999999
Q ss_pred cCchhhhhc
Q 043686 141 EAKWDVVNQ 149 (282)
Q Consensus 141 ~g~~~~A~~ 149 (282)
.|.+.+|+.
T Consensus 202 ~~e~k~AI~ 210 (504)
T KOG0624|consen 202 EGEPKKAIH 210 (504)
T ss_pred cCcHHHHHH
Confidence 999999987
No 199
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.99 E-value=1.4 Score=37.08 Aligned_cols=117 Identities=13% Similarity=0.069 Sum_probs=62.3
Q ss_pred CChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh---------ccCCCChhHHHHHHHHHHccCChH
Q 043686 9 GQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN---------RIRSPKVTHHALMVSVLARAGLFD 79 (282)
Q Consensus 9 g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~---------~g~~p~~~~~~~li~~~~~~g~~~ 79 (282)
|.+.-...++++..+ ..-+-++.-.+.|...-.+.|+.+.|...|+ .++.-+..+.-..-..|.-+.++.
T Consensus 191 kEy~iS~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a 269 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA 269 (366)
T ss_pred hhhhhhHHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence 344445555555555 4444455555556666666677777776666 233333223333334445556666
Q ss_pred HHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 043686 80 EARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPL 126 (282)
Q Consensus 80 ~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~ 126 (282)
.|.+.|++.+ ..| |.+.-|+=.-+..-.|+...|.+..+.|.+..|.
T Consensus 270 ~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 270 EAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 6777776655 222 2333333333333346667777777777766663
No 200
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.68 E-value=0.71 Score=41.68 Aligned_cols=118 Identities=10% Similarity=-0.021 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHhh----cc-CCCChhHHHHHHHHHHccCChHHHHHHHHh-cCCCCCHHHH-HHHHHH
Q 043686 31 PLTFAAVLHACSTAGMVEEGWLCFN----RI-RSPKVTHHALMVSVLARAGLFDEARIFIQE-YHMERYPEVL-RALLEG 103 (282)
Q Consensus 31 ~~ty~~ll~a~~~~g~~~~a~~l~~----~g-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~-m~~~p~~~~~-~~li~~ 103 (282)
...|...|++--+..-++.|+.+|. .| +.+++.+++++|.-|| .|+...|.++|+- |..-||+..| +--+.-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3567888888888888999999998 55 6778999999999888 5788899999985 6656776555 556777
Q ss_pred HHhcCChhHHHHHHHHHH-hcCCC-ChhHHHHHHHHHHHcCchhhhhc
Q 043686 104 CRIHVQVKTGKRVIDQLC-ELKPL-SAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 104 ~~~~g~~~~A~~~~~~m~-~~~p~-~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
+.+.++-+.|..+|+... ++..+ -...|-.+|+.=.+.|++..|..
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~s 523 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYS 523 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHh
Confidence 888899999999999665 22211 12688888888888888766654
No 201
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.58 E-value=0.59 Score=46.22 Aligned_cols=101 Identities=15% Similarity=0.182 Sum_probs=70.5
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh----ccCCCChhHHHHHHHHHHccCChHH
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN----RIRSPKVTHHALMVSVLARAGLFDE 80 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~----~g~~p~~~~~~~li~~~~~~g~~~~ 80 (282)
=.+.|.+.+|++-|-+. -|+..|.-+++++.+.|.+++-...+. ..-+| .+=+.||-+|+|.+++.+
T Consensus 1114 QL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1114 QLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIFAYAKTNRLTE 1184 (1666)
T ss_pred HHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHHHHHhchHHH
Confidence 34668888888877664 345689999999999999998888887 33444 445689999999999888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043686 81 ARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVID 118 (282)
Q Consensus 81 A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 118 (282)
-++++. .||+.---.+-+-|...|.++.|.-+|.
T Consensus 1185 lE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1185 LEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 777642 4555544555555555555555555554
No 202
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.51 E-value=3.7 Score=36.61 Aligned_cols=139 Identities=12% Similarity=0.094 Sum_probs=84.3
Q ss_pred hcCChHHHHHHHHHhHHhCCCCCCHH--HHHHHHHHHhcCCCHHHHHHHhh--ccCCCCh-hHHHHHHHHHHccCChHHH
Q 043686 7 LHGQRELGLSLFSELEKKSSIEIDPL--TFAAVLHACSTAGMVEEGWLCFN--RIRSPKV-THHALMVSVLARAGLFDEA 81 (282)
Q Consensus 7 ~~g~~~~A~~lf~~m~~~~g~~p~~~--ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~-~~~~~li~~~~~~g~~~~A 81 (282)
-.|++++|.+-|+.|.. . |... -...|.-.--+.|.-+-|++.-+ .+..|.. -.+.+.+...|..|+++.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~-d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLD-D---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhc-C---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHH
Confidence 46889999999999976 1 3221 23334444456788887877777 7777763 4677899999999999999
Q ss_pred HHHHHhcC----CCCCHH--HHHHHHHHHHhc---CChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 82 RIFIQEYH----MERYPE--VLRALLEGCRIH---VQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 82 ~~l~~~m~----~~p~~~--~~~~li~~~~~~---g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
+++++.-. +.||+. .-..|+.+-... -+...|...-.+..++.|+-+..-..-..+|.+.|++-++-.
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhh
Confidence 99988743 556632 233344332111 223344444444445555444444444555566665555544
No 203
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.2 Score=45.71 Aligned_cols=85 Identities=13% Similarity=-0.001 Sum_probs=73.7
Q ss_pred HHHHHccCChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhh
Q 043686 69 VSVLARAGLFDEARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDV 146 (282)
Q Consensus 69 i~~~~~~g~~~~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~ 146 (282)
-++.+..|++++|..+|-+.. -++|-+-|+.=..+|.+.|++++|++=-.+-++++|+-+.-|+-+-.+..-.|++++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 356678999999999998743 355788999999999999999999998888889999999999999999999999999
Q ss_pred hhcccce
Q 043686 147 VNQAYSW 153 (282)
Q Consensus 147 A~~~~~~ 153 (282)
|...++.
T Consensus 89 A~~ay~~ 95 (539)
T KOG0548|consen 89 AILAYSE 95 (539)
T ss_pred HHHHHHH
Confidence 9885443
No 204
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=93.41 E-value=0.56 Score=43.16 Aligned_cols=98 Identities=13% Similarity=0.013 Sum_probs=61.3
Q ss_pred ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC---CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHH
Q 043686 56 RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH---MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENY 131 (282)
Q Consensus 56 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~ 131 (282)
..+.|+ .+|...++.-.|..-+..|..+|.+.. ..+ .+.++++++.-||.. +.+-|.++|+-=..-.|+++..-
T Consensus 361 ~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~csk-D~~~AfrIFeLGLkkf~d~p~yv 438 (656)
T KOG1914|consen 361 EDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSK-DKETAFRIFELGLKKFGDSPEYV 438 (656)
T ss_pred hccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcC-ChhHHHHHHHHHHHhcCCChHHH
Confidence 334443 367777777777777777777777754 233 577777777777654 56677777776554455554555
Q ss_pred HHHHHHHHHcCchhhhhcccceee
Q 043686 132 IMLSNWYAAEAKWDVVNQAYSWIE 155 (282)
Q Consensus 132 ~~Li~~y~~~g~~~~A~~~~~~~~ 155 (282)
..-++.+...++=..|..+|+...
T Consensus 439 ~~YldfL~~lNdd~N~R~LFEr~l 462 (656)
T KOG1914|consen 439 LKYLDFLSHLNDDNNARALFERVL 462 (656)
T ss_pred HHHHHHHHHhCcchhHHHHHHHHH
Confidence 556666666666555555555443
No 205
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.40 E-value=3.1 Score=32.63 Aligned_cols=101 Identities=12% Similarity=0.074 Sum_probs=76.7
Q ss_pred HHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccC--ChHHHHHHHHhcCCCC
Q 043686 15 LSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAG--LFDEARIFIQEYHMER 92 (282)
Q Consensus 15 ~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~p 92 (282)
.+..+.+.+ .++.|+...|.-+++.+.+.|.+..-..+...++-||.......+-.+.... -..-|.+.+.++.
T Consensus 14 lEYirSl~~-~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~--- 89 (167)
T PF07035_consen 14 LEYIRSLNQ-HNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG--- 89 (167)
T ss_pred HHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh---
Confidence 455666677 8999999999999999999999999999999777787766666665544321 1334555555554
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 93 YPEVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 93 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
..+..++..+-..|++-+|.++.+...
T Consensus 90 --~~~~~iievLL~~g~vl~ALr~ar~~~ 116 (167)
T PF07035_consen 90 --TAYEEIIEVLLSKGQVLEALRYARQYH 116 (167)
T ss_pred --hhHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 356778889999999999999998764
No 206
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.19 E-value=2.8 Score=39.18 Aligned_cols=137 Identities=10% Similarity=0.044 Sum_probs=93.8
Q ss_pred ChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh----------ccCCCChhHHHHHHHHHHccCCh
Q 043686 10 QRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN----------RIRSPKVTHHALMVSVLARAGLF 78 (282)
Q Consensus 10 ~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~----------~g~~p~~~~~~~li~~~~~~g~~ 78 (282)
....|.+++...-+ +.+-+ .+.--..+.-....|+++.|.+++. ..+.-..-+-++++..|-+.++-
T Consensus 356 ~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCC
Confidence 45566677666543 22222 2344455556677899999998887 12222235667788889999888
Q ss_pred HHHHHHHHhcC--------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 79 DEARIFIQEYH--------MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 79 ~~A~~l~~~m~--------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
+.|..++++.. ..+. ..+|.-+..-=-++|+-++|..+++++.+..|+++.+..-++.+|++. +.++|+.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHH
Confidence 88888887632 2222 233333444456779999999999999999998999999999999887 4555555
No 207
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.12 E-value=4.2 Score=38.55 Aligned_cols=130 Identities=8% Similarity=0.027 Sum_probs=71.9
Q ss_pred hcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh----------ccCCCChhHHHHHHHHHHccC
Q 043686 7 LHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN----------RIRSPKVTHHALMVSVLARAG 76 (282)
Q Consensus 7 ~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~----------~g~~p~~~~~~~li~~~~~~g 76 (282)
.+|-++-++.+|++-.+ +.|.. -.-.|.-+++.++.++|.+.+. ...+.+-..|.-+-+..++.-
T Consensus 150 ~~~lPets~rvyrRYLk---~~P~~--~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p 224 (835)
T KOG2047|consen 150 SHGLPETSIRVYRRYLK---VAPEA--REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNP 224 (835)
T ss_pred hCCChHHHHHHHHHHHh---cCHHH--HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCc
Confidence 34555566666666554 33332 4555666666666666666665 112223344444444444332
Q ss_pred ---ChHHHHHHHHhcC-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 043686 77 ---LFDEARIFIQEYH-MERY--PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEA 142 (282)
Q Consensus 77 ---~~~~A~~l~~~m~-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g 142 (282)
.--...++++.+. .-|| -..|++|..-|.+.|++|+|..+|++.....- .+.-|+.+.+.|+...
T Consensus 225 ~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~-tvrDFt~ifd~Ya~FE 295 (835)
T KOG2047|consen 225 DKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM-TVRDFTQIFDAYAQFE 295 (835)
T ss_pred chhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe-ehhhHHHHHHHHHHHH
Confidence 2223444555543 3455 34688888888888888888888887663221 2244555566665543
No 208
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.08 E-value=0.31 Score=47.07 Aligned_cols=136 Identities=9% Similarity=0.018 Sum_probs=74.6
Q ss_pred hcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHHHHHH
Q 043686 7 LHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDEARIF 84 (282)
Q Consensus 7 ~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~l 84 (282)
.-|.+++|+.+|++-++ |.-|=+-|...|++++|.++-+ -.+.. ..||-.--.-+-..++++.|++.
T Consensus 812 eLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL-r~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHL-RNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceeh-hhhHHHHHHHHHhhccHHHHHHH
Confidence 45777777777777665 3333345666778888887777 11111 12444444444445666666666
Q ss_pred HHhcC----------------------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh------c-------------
Q 043686 85 IQEYH----------------------MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCE------L------------- 123 (282)
Q Consensus 85 ~~~m~----------------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~------------- 123 (282)
|++-. -..|...|.-.-.-.-..|++|.|+.+|+..+. +
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~i 960 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARI 960 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHH
Confidence 65532 011222233333334455777777777776541 0
Q ss_pred --CCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686 124 --KPLSAENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 124 --~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
+..|....--|.++|-+.|++-+|...|..
T Consensus 961 A~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 961 AEESGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 011223344567777777777777775544
No 209
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=1.4 Score=39.10 Aligned_cols=81 Identities=9% Similarity=-0.011 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 043686 63 THHALMVSVLARAGLFDEARIFIQEYH-M-ERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAA 140 (282)
Q Consensus 63 ~~~~~li~~~~~~g~~~~A~~l~~~m~-~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~ 140 (282)
.++..|.-+|-|.+++..|.+.-++.- + .+|+-..--=-.+|...|+++.|...|+++++++|.|-..-+-|+.+--+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 467788888999999999999887743 3 45576766677889999999999999999999999996666667666555
Q ss_pred cCc
Q 043686 141 EAK 143 (282)
Q Consensus 141 ~g~ 143 (282)
..+
T Consensus 338 ~~~ 340 (397)
T KOG0543|consen 338 IRE 340 (397)
T ss_pred HHH
Confidence 544
No 210
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.01 E-value=0.49 Score=45.78 Aligned_cols=162 Identities=9% Similarity=-0.013 Sum_probs=87.5
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-----------------------ccCCCC
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-----------------------RIRSPK 61 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-----------------------~g~~p~ 61 (282)
|-..|++++|+++-+.-.+ -.++- ||-.--.-+-..++.+.|.+.|+ ..-..|
T Consensus 836 yQs~g~w~eA~eiAE~~DR-iHLr~---Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d 911 (1416)
T KOG3617|consen 836 YQSQGMWSEAFEIAETKDR-IHLRN---TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRD 911 (1416)
T ss_pred HHhcccHHHHHHHHhhccc-eehhh---hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccc
Confidence 5567888888887766443 33333 34333344444567777777777 111223
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHhcC----------C-------------CCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043686 62 VTHHALMVSVLARAGLFDEARIFIQEYH----------M-------------ERYPEVLRALLEGCRIHVQVKTGKRVID 118 (282)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~----------~-------------~p~~~~~~~li~~~~~~g~~~~A~~~~~ 118 (282)
...|.....-+-..|++|.|+.++...+ + .-|......|-.-|-+.|++.+|...|.
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3444445555556788888777776643 0 1234444556666666677777776666
Q ss_pred HHHhcCCCChhHHHHHHHHHHHcCchhhhhcccc------------eeeecC-eEEEEecCCCCCCChHHHHH
Q 043686 119 QLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYS------------WIEFRN-KVHVFGTGDVSCPRSEGIFW 178 (282)
Q Consensus 119 ~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~------------~~~~~~-~~~~~i~~~~~~~~~~~a~~ 178 (282)
+. .++...|+.+-..+.-|+-..+.. ..+..+ ..+.-+.-|-+.|.+.+|++
T Consensus 992 rA--------qafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALe 1056 (1416)
T KOG3617|consen 992 RA--------QAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALE 1056 (1416)
T ss_pred HH--------HHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHH
Confidence 55 355556665544444333332111 111112 22333444677777777763
No 211
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.88 E-value=0.21 Score=27.32 Aligned_cols=32 Identities=16% Similarity=0.042 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 043686 95 EVLRALLEGCRIHVQVKTGKRVIDQLCELKPL 126 (282)
Q Consensus 95 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~ 126 (282)
.+|..+-..|.+.|++++|.+.|++..++.|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 36777788888999999999999988888773
No 212
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=92.66 E-value=0.89 Score=44.86 Aligned_cols=135 Identities=13% Similarity=0.039 Sum_probs=89.5
Q ss_pred ChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHH--HHHHHHccCChHHHHH
Q 043686 10 QRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHAL--MVSVLARAGLFDEARI 83 (282)
Q Consensus 10 ~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~--li~~~~~~g~~~~A~~ 83 (282)
+..+|.+.|+..-+ +.|+ ........+.|++....+.|.++.- ....| -...+|. .--.|-+.++..+|..
T Consensus 507 Dm~RA~kCf~KAFe---LDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~ 583 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFE---LDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVC 583 (1238)
T ss_pred HHHHHHHHHHHHhc---CCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHH
Confidence 55677888887655 4443 3466778888999999998888854 11111 1222232 3334667888888888
Q ss_pred HHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHH--HHHHHHHcCchhhhhc
Q 043686 84 FIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIM--LSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 84 l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~--Li~~y~~~g~~~~A~~ 149 (282)
-|+..- ..| |...|-.|..+|...|++..|.++|.+...++|.+ +|.- ..-+-|-.|...+|..
T Consensus 584 ~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s--~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 584 EFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS--KYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh--HHHHHHHHHHHHHhhhHHHHHH
Confidence 887743 556 58889999999999999999999999988888854 3331 2223344455555544
No 213
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.41 E-value=0.3 Score=27.42 Aligned_cols=27 Identities=15% Similarity=0.010 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043686 96 VLRALLEGCRIHVQVKTGKRVIDQLCE 122 (282)
Q Consensus 96 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 122 (282)
+|+.|-..|.+.|++++|.++|++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 577888889999999999999988653
No 214
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=92.30 E-value=0.64 Score=39.79 Aligned_cols=131 Identities=12% Similarity=0.143 Sum_probs=72.6
Q ss_pred hcCChHHHHHHHHHhHHh---CCCCCCH--HHHHHHHHHHhcC-CCHHHHHHHhh--------ccCCCC--hhHHHHHHH
Q 043686 7 LHGQRELGLSLFSELEKK---SSIEIDP--LTFAAVLHACSTA-GMVEEGWLCFN--------RIRSPK--VTHHALMVS 70 (282)
Q Consensus 7 ~~g~~~~A~~lf~~m~~~---~g~~p~~--~ty~~ll~a~~~~-g~~~~a~~l~~--------~g~~p~--~~~~~~li~ 70 (282)
+.+++++|++.|.+..+- .|- |+. ..+..+-..|-+. |++++|.+.|. .+ .|. ..++.-+..
T Consensus 86 k~~~~~~Ai~~~~~A~~~y~~~G~-~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 86 KKGDPDEAIECYEKAIEIYREAGR-FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HhhCHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 444666666666664330 221 222 2455566667776 78888888777 23 222 345566777
Q ss_pred HHHccCChHHHHHHHHhcC--------CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh-----hHHHHHHH
Q 043686 71 VLARAGLFDEARIFIQEYH--------MERYPE-VLRALLEGCRIHVQVKTGKRVIDQLCELKPLSA-----ENYIMLSN 136 (282)
Q Consensus 71 ~~~~~g~~~~A~~l~~~m~--------~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~-----~~~~~Li~ 136 (282)
.+.+.|++++|.++|++.. ..+++. .|-..+-++...|+...|.+.|++..+..|.-. ..-..|+.
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 7888888888888887742 112222 222233355566788888888888877666321 22345666
Q ss_pred HHH
Q 043686 137 WYA 139 (282)
Q Consensus 137 ~y~ 139 (282)
+|-
T Consensus 244 A~~ 246 (282)
T PF14938_consen 244 AYE 246 (282)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
No 215
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.28 E-value=3.2 Score=36.95 Aligned_cols=123 Identities=16% Similarity=0.146 Sum_probs=79.8
Q ss_pred hhhh---cCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHh----c-----CCCHHHHHHHhh--ccCCCChhHHHHHH
Q 043686 4 GYSL---HGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACS----T-----AGMVEEGWLCFN--RIRSPKVTHHALMV 69 (282)
Q Consensus 4 ~~~~---~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~----~-----~g~~~~a~~l~~--~g~~p~~~~~~~li 69 (282)
++.+ .|+.++|++++..... ..-.+++.||..+-..|- . ...+++|.+.+. ..+.||..+--.+.
T Consensus 188 ALnRrn~~gdre~Al~il~~~l~-~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~A 266 (374)
T PF13281_consen 188 ALNRRNKPGDREKALQILLPVLE-SDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAA 266 (374)
T ss_pred HHhhcccCCCHHHHHHHHHHHHh-ccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHH
Confidence 4555 8999999999999665 556677778877655432 2 234788888888 44556544433333
Q ss_pred HHHHccCC-hHH---HHHHH---Hhc---C----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686 70 SVLARAGL-FDE---ARIFI---QEY---H----MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS 127 (282)
Q Consensus 70 ~~~~~~g~-~~~---A~~l~---~~m---~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~ 127 (282)
-.+--+|. ++. ..++- ... + -..|-.-+.++..++.-.|+.++|.+..++|..+.|+.
T Consensus 267 tLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 267 TLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 33333333 222 22222 111 1 13455677889999999999999999999999888754
No 216
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.21 E-value=3.6 Score=41.10 Aligned_cols=128 Identities=10% Similarity=0.104 Sum_probs=92.8
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHH
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIF 84 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 84 (282)
...++-+++|+.+|++.. .+....+.||. +.+.++.|.+.-+.--.| .+|+-+-.+--+.|.+.+|.+-
T Consensus 1058 ai~~~LyEEAF~ifkkf~------~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD------MNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc------ccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHH
Confidence 345677888888888754 34445555554 346677777776633334 5788888888888999999888
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh--cCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 85 IQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCE--LKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 85 ~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
|=+.. |...|--+|....+.|.||+-.+.+...++ -+| ..=+.||-+|++.+++.+-+.
T Consensus 1127 yikad---Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~---~id~eLi~AyAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1127 YIKAD---DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP---YIDSELIFAYAKTNRLTELEE 1187 (1666)
T ss_pred HHhcC---CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc---cchHHHHHHHHHhchHHHHHH
Confidence 76654 455888899999999999988888776663 244 455678889999998888766
No 217
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=92.11 E-value=5.2 Score=32.05 Aligned_cols=113 Identities=12% Similarity=0.107 Sum_probs=82.4
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-------ccCCCChhHHHHHHHHHHcc
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-------RIRSPKVTHHALMVSVLARA 75 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-------~g~~p~~~~~~~li~~~~~~ 75 (282)
.++...|+..||...|.+-.. --+.-|....-.+-++.-..+++..|...++ .+-.||. --.+-..|.-.
T Consensus 97 ~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~Ll~aR~laa~ 173 (251)
T COG4700 97 NALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HLLFARTLAAQ 173 (251)
T ss_pred HHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hHHHHHHHHhc
Confidence 567889999999999999875 4456677888888899999999999999998 3444443 33455678889
Q ss_pred CChHHHHHHHHhcC-CCCCH--HH-HHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 76 GLFDEARIFIQEYH-MERYP--EV-LRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 76 g~~~~A~~l~~~m~-~~p~~--~~-~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
|+.++|+.-|+... +.|+. .+ |.-+ +.+.|+.++|..-+.+..
T Consensus 174 g~~a~Aesafe~a~~~ypg~~ar~~Y~e~---La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 174 GKYADAESAFEVAISYYPGPQARIYYAEM---LAKQGRLREANAQYVAVV 220 (251)
T ss_pred CCchhHHHHHHHHHHhCCCHHHHHHHHHH---HHHhcchhHHHHHHHHHH
Confidence 99999999999854 66763 33 4433 456666666555444443
No 218
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.03 E-value=4.3 Score=40.67 Aligned_cols=144 Identities=10% Similarity=0.030 Sum_probs=93.9
Q ss_pred hhhcCChHHHHHHHHHhHHhC--CCCCC--HHHHHHHHHHHhcCCCHHHHHHHhh--ccC---CCChhHH-----HHHHH
Q 043686 5 YSLHGQRELGLSLFSELEKKS--SIEID--PLTFAAVLHACSTAGMVEEGWLCFN--RIR---SPKVTHH-----ALMVS 70 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~--g~~p~--~~ty~~ll~a~~~~g~~~~a~~l~~--~g~---~p~~~~~-----~~li~ 70 (282)
+...|++++|...+.+... . ...|. ..++..+-......|+.++|.+.++ ..+ ......+ ...+.
T Consensus 583 ~~~~G~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLE-VLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHhcCHHHHHHHHHHhHH-hhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence 4456999999999988654 2 11122 2344445556778899999998887 111 1111111 11234
Q ss_pred HHHccCChHHHHHHHHhcC-CC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhc------CCCChhHHHHHHHHH
Q 043686 71 VLARAGLFDEARIFIQEYH-ME-RY----PEVLRALLEGCRIHVQVKTGKRVIDQLCEL------KPLSAENYIMLSNWY 138 (282)
Q Consensus 71 ~~~~~g~~~~A~~l~~~m~-~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~p~~~~~~~~Li~~y 138 (282)
.+...|+.+.|.+++.... .. .. ...+..+..++...|+.++|...+.+.... .+....+...+..+|
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~ 741 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY 741 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 5566899999999987754 11 11 112455667789999999999999998732 122234667788889
Q ss_pred HHcCchhhhhc
Q 043686 139 AAEAKWDVVNQ 149 (282)
Q Consensus 139 ~~~g~~~~A~~ 149 (282)
.+.|+.++|..
T Consensus 742 ~~~G~~~~A~~ 752 (903)
T PRK04841 742 WQQGRKSEAQR 752 (903)
T ss_pred HHcCCHHHHHH
Confidence 99999998877
No 219
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=91.97 E-value=1.7 Score=41.49 Aligned_cols=123 Identities=10% Similarity=0.023 Sum_probs=74.8
Q ss_pred cCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccC-CCC----hhHHHHHHHHHHccCChHHHH
Q 043686 8 HGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIR-SPK----VTHHALMVSVLARAGLFDEAR 82 (282)
Q Consensus 8 ~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~ 82 (282)
-|++++|.++|-+|.+ ..+ -|....+.|+.-...++++.|- ..| ...|+.+-+-++....+++|.
T Consensus 747 ~g~feeaek~yld~dr-rDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~ 816 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADR-RDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAA 816 (1189)
T ss_pred hcchhHhhhhhhccch-hhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777766 221 2344556677766666666221 111 345677777777777777777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcc
Q 043686 83 IFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQA 150 (282)
Q Consensus 83 ~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~ 150 (282)
+.+..-. | -...+.+|.+..++++-+.+-+ .-|.+....--+.+++...|+-++|...
T Consensus 817 ~yY~~~~---~---~e~~~ecly~le~f~~LE~la~----~Lpe~s~llp~~a~mf~svGMC~qAV~a 874 (1189)
T KOG2041|consen 817 KYYSYCG---D---TENQIECLYRLELFGELEVLAR----TLPEDSELLPVMADMFTSVGMCDQAVEA 874 (1189)
T ss_pred HHHHhcc---c---hHhHHHHHHHHHhhhhHHHHHH----hcCcccchHHHHHHHHHhhchHHHHHHH
Confidence 7776643 1 1124555555544444333322 2355656777888999999999988653
No 220
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=91.89 E-value=1 Score=37.68 Aligned_cols=73 Identities=12% Similarity=0.188 Sum_probs=53.5
Q ss_pred HHHHHHHccCChHHHHHHHHhcC-CCCC-HHH---HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh-hHHHHHHHHHH
Q 043686 67 LMVSVLARAGLFDEARIFIQEYH-MERY-PEV---LRALLEGCRIHVQVKTGKRVIDQLCELKPLSA-ENYIMLSNWYA 139 (282)
Q Consensus 67 ~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~-~~~~~Li~~y~ 139 (282)
....-+.+.|++++|.+.|++.. ..|+ ..+ .-.+..+|.+.+++++|...|++..+..|+++ .-|...+.+++
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 34555567899999999999975 4554 222 23466788999999999999999999988764 34555555544
No 221
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.67 E-value=1.6 Score=37.29 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH-------hcCCCChhHHHH
Q 043686 63 THHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLC-------ELKPLSAENYIM 133 (282)
Q Consensus 63 ~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~~p~~~~~~~~ 133 (282)
.++..++..+..+|+++.+.+.+++.- ..| |...|-.|+.+|.+.|+...|.+.|+.+. ++.| .+.+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P-~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDP-APELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCc-cHHHHHH
Confidence 356678888899999999999999865 555 68899999999999999999999999987 3566 3356655
Q ss_pred HHHH
Q 043686 134 LSNW 137 (282)
Q Consensus 134 Li~~ 137 (282)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5444
No 222
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.62 E-value=2.3 Score=40.20 Aligned_cols=147 Identities=12% Similarity=0.079 Sum_probs=94.8
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHHHH
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDEAR 82 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~A~ 82 (282)
+.+.|++..-...|++-.....+.-....|.-.+.-.-..|.++-+.++++ ..+.| ..-+--|.-+++.+++++|-
T Consensus 112 l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P--~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 112 LIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP--EAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred HHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH--HHHHHHHHHHHhccchHHHH
Confidence 345677777777777754413344444567777777777788888888888 44444 34667788888888888888
Q ss_pred HHHHhcC---------CCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHcCchhhhhc
Q 043686 83 IFIQEYH---------MERYPEVLRALLEGCRIH---VQVKTGKRVIDQLCELKPLSA-ENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 83 ~l~~~m~---------~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~p~~~-~~~~~Li~~y~~~g~~~~A~~ 149 (282)
+.+.... .+.+--.|+-+-.-..++ +.--....+++.+.+.-||.. ..|++|.+.|.+.|++++|..
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 8777643 122334455443333333 233334456666655555432 578999999999999999988
Q ss_pred ccce
Q 043686 150 AYSW 153 (282)
Q Consensus 150 ~~~~ 153 (282)
++..
T Consensus 270 vyee 273 (835)
T KOG2047|consen 270 VYEE 273 (835)
T ss_pred HHHH
Confidence 5443
No 223
>PRK11906 transcriptional regulator; Provisional
Probab=91.50 E-value=3.5 Score=37.56 Aligned_cols=140 Identities=13% Similarity=0.096 Sum_probs=90.4
Q ss_pred hHHHHHHHHHhHHhCCCCCCHHH-HHH-----H---HHHHhc-CCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCC
Q 043686 11 RELGLSLFSELEKKSSIEIDPLT-FAA-----V---LHACST-AGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGL 77 (282)
Q Consensus 11 ~~~A~~lf~~m~~~~g~~p~~~t-y~~-----l---l~a~~~-~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~ 77 (282)
.+.|+.+|.+-.....+.|+-.. |.. + +.++.. .....+|.++-+ ..+.| |......+-.++.-.|+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 35788899998731347776542 222 1 112222 344556666666 55666 46666677777777888
Q ss_pred hHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh--hHHHHHHHHHHHcCchhhhhccc
Q 043686 78 FDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSA--ENYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 78 ~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~--~~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
++.|..+|++.. ..|| ..+|...--...-.|+.++|.+.+++..++.|.-. ...-..+++|+.. .+|+|.+.+
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 999999999865 6888 45555555556668999999999999888988532 2233455667654 355555533
No 224
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.40 E-value=1.9 Score=36.82 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686 95 EVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 95 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
.++..++..+...|+.+.+.+.+++....+|-+...|..|+.+|.+.|+...|+..+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y 210 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAY 210 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHH
Confidence 346667888889999999999999999999999999999999999999988875443
No 225
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.39 E-value=3.4 Score=32.05 Aligned_cols=63 Identities=17% Similarity=0.114 Sum_probs=37.4
Q ss_pred hHHHHHHHHH---HccCChHHHHHHHHhcC-CCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHhcCC
Q 043686 63 THHALMVSVL---ARAGLFDEARIFIQEYH-MERYPEVLRAL-LEGCRIHVQVKTGKRVIDQLCELKP 125 (282)
Q Consensus 63 ~~~~~li~~~---~~~g~~~~A~~l~~~m~-~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~p 125 (282)
.+.+.||+.+ .+.++.++++.+++.+. .+|.....-.+ ..-+.+.|+|.+|.++|+++.+-.|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~ 75 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAP 75 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 3445555444 35567777777777766 56653332221 1225677777777777777765555
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.30 E-value=3.6 Score=38.04 Aligned_cols=142 Identities=17% Similarity=0.057 Sum_probs=79.5
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCH-----HHHHHHHHHHhc----CCCHHHHHHHhh--ccCCCChhHHHHH-HH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDP-----LTFAAVLHACST----AGMVEEGWLCFN--RIRSPKVTHHALM-VS 70 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~-----~ty~~ll~a~~~----~g~~~~a~~l~~--~g~~p~~~~~~~l-i~ 70 (282)
+...=.|+-+.+++++.+-.+..+++-.. .+|..++..++. ....+.|.++++ ..--|+...|.-. -.
T Consensus 196 ~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR 275 (468)
T PF10300_consen 196 SFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGR 275 (468)
T ss_pred hhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 33444677777887777755413333222 234455543332 456777777777 5555776666533 24
Q ss_pred HHHccCChHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHH-HHHHHHcCc
Q 043686 71 VLARAGLFDEARIFIQEYH------MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIML-SNWYAAEAK 143 (282)
Q Consensus 71 ~~~~~g~~~~A~~l~~~m~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~L-i~~y~~~g~ 143 (282)
.+...|++++|.+.|++.. -+-....+--+.-++.-..+|++|.+.|..+.+...-+..+|.-+ ...|...|+
T Consensus 276 ~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~ 355 (468)
T PF10300_consen 276 LERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGR 355 (468)
T ss_pred HHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc
Confidence 4556688888888887532 022233444455567777788888888888875443232334322 233444444
Q ss_pred h
Q 043686 144 W 144 (282)
Q Consensus 144 ~ 144 (282)
.
T Consensus 356 ~ 356 (468)
T PF10300_consen 356 E 356 (468)
T ss_pred c
Confidence 4
No 227
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=91.29 E-value=6.8 Score=31.66 Aligned_cols=144 Identities=15% Similarity=0.012 Sum_probs=85.8
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCCh--hHHHHHHHHHHc----
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSPKV--THHALMVSVLAR---- 74 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~--~~~~~li~~~~~---- 74 (282)
.+.+.|++++|++.|+++.....-.|-. ...-.+..++-+.|+.++|...++ ...-|+. .-+.-.+.+.+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~ 93 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQI 93 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhC
Confidence 3567899999999999998722222222 244556778899999999999999 2222321 122222222221
Q ss_pred ---------cCChHHHHHHHHhcC-CCCC------H-----HHHH-------HHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 043686 75 ---------AGLFDEARIFIQEYH-MERY------P-----EVLR-------ALLEGCRIHVQVKTGKRVIDQLCELKPL 126 (282)
Q Consensus 75 ---------~g~~~~A~~l~~~m~-~~p~------~-----~~~~-------~li~~~~~~g~~~~A~~~~~~m~~~~p~ 126 (282)
.+...+|...|+... --|| + ...+ .+..-|.+.|.+..|..-++.+.+--|+
T Consensus 94 ~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~ 173 (203)
T PF13525_consen 94 PGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPD 173 (203)
T ss_dssp HHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTT
T ss_pred ccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 123446666666643 1232 1 1111 1344588999999999999999988886
Q ss_pred Ch---hHHHHHHHHHHHcCchhhh
Q 043686 127 SA---ENYIMLSNWYAAEAKWDVV 147 (282)
Q Consensus 127 ~~---~~~~~Li~~y~~~g~~~~A 147 (282)
+. .....|+.+|-+.|..+.|
T Consensus 174 t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 174 TPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp SHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred CchHHHHHHHHHHHHHHhCChHHH
Confidence 53 3345788889999887754
No 228
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.22 E-value=0.85 Score=38.75 Aligned_cols=36 Identities=11% Similarity=0.157 Sum_probs=22.6
Q ss_pred CChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCC
Q 043686 9 GQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAG 45 (282)
Q Consensus 9 g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g 45 (282)
++++=-...++.|++ .|+..|..+|+.||+.+=+..
T Consensus 86 ~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgk 121 (406)
T KOG3941|consen 86 THVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGK 121 (406)
T ss_pred chHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccc
Confidence 444444555666766 777777777777776665543
No 229
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.16 E-value=9 Score=32.87 Aligned_cols=134 Identities=12% Similarity=0.041 Sum_probs=96.1
Q ss_pred hHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh------------------------------ccCCC
Q 043686 11 RELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN------------------------------RIRSP 60 (282)
Q Consensus 11 ~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~------------------------------~g~~p 60 (282)
..+|++||.-+.. .. --+++-+-++.++...-+..+|...+. .+..-
T Consensus 149 s~KA~ELFayLv~-hk--gk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~ 225 (361)
T COG3947 149 SRKALELFAYLVE-HK--GKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKY 225 (361)
T ss_pred hhHHHHHHHHHHH-hc--CCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccc
Confidence 3579999998877 22 234566677777777777777776665 44555
Q ss_pred ChhHHHHHHHHHHcc-CChHHHHHHHHhcC----------CCCC-----HHHHHH----HHHHHHhcCChhHHHHHHHHH
Q 043686 61 KVTHHALMVSVLARA-GLFDEARIFIQEYH----------MERY-----PEVLRA----LLEGCRIHVQVKTGKRVIDQL 120 (282)
Q Consensus 61 ~~~~~~~li~~~~~~-g~~~~A~~l~~~m~----------~~p~-----~~~~~~----li~~~~~~g~~~~A~~~~~~m 120 (282)
|+.-|-..+.-.-+. -.++++.++....+ ..-| ..+|.. .-+.|..+|.+.+|.++.+..
T Consensus 226 Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ 305 (361)
T COG3947 226 DVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRA 305 (361)
T ss_pred cHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 777777777665544 34788888887763 1112 123444 445799999999999999999
Q ss_pred HhcCCCChhHHHHHHHHHHHcCchhhh
Q 043686 121 CELKPLSAENYIMLSNWYAAEAKWDVV 147 (282)
Q Consensus 121 ~~~~p~~~~~~~~Li~~y~~~g~~~~A 147 (282)
..++|-+...|-.|+..|...|+=-.|
T Consensus 306 ltldpL~e~~nk~lm~~la~~gD~is~ 332 (361)
T COG3947 306 LTLDPLSEQDNKGLMASLATLGDEISA 332 (361)
T ss_pred hhcChhhhHHHHHHHHHHHHhccchhh
Confidence 999998888888999999999984333
No 230
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=91.08 E-value=0.8 Score=37.10 Aligned_cols=74 Identities=12% Similarity=0.068 Sum_probs=50.2
Q ss_pred HHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHc
Q 043686 68 MVSVLARAGLFDEARIFIQEYH-MERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSA-ENYIMLSNWYAAE 141 (282)
Q Consensus 68 li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~-~~~~~Li~~y~~~ 141 (282)
....+.+.|++++|.+.|+++. --|+ ..+.-.++.+|.+.|++++|...|++.....|.++ ..+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 3445667899999999999875 1222 45666788899999999999999999998888664 3344444444433
No 231
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=91.05 E-value=0.53 Score=40.28 Aligned_cols=119 Identities=13% Similarity=0.040 Sum_probs=65.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHhh--------ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC------CCCC--HHH
Q 043686 34 FAAVLHACSTAGMVEEGWLCFN--------RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH------MERY--PEV 96 (282)
Q Consensus 34 y~~ll~a~~~~g~~~~a~~l~~--------~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~------~~p~--~~~ 96 (282)
|.-.-+.|-..|++++|.+.|. .+-..+ ...|......|-+. ++++|.+.+++.. -.|+ ..+
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~ 116 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKC 116 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3444445556666766666666 111111 23444445555444 6666666665532 1333 345
Q ss_pred HHHHHHHHHhc-CChhHHHHHHHHHHhc---CCCC---hhHHHHHHHHHHHcCchhhhhcccce
Q 043686 97 LRALLEGCRIH-VQVKTGKRVIDQLCEL---KPLS---AENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 97 ~~~li~~~~~~-g~~~~A~~~~~~m~~~---~p~~---~~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
+..+-..|-+. |++++|.+.|++..++ .... ...+.-+...+.+.|++++|...++.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 66667778787 8999999999988742 1110 23455677778888888877665544
No 232
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.69 E-value=1.3 Score=37.04 Aligned_cols=119 Identities=13% Similarity=0.134 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh-hHHHHHH
Q 043686 62 VTHHALMVSVLARAGLFDEARIFIQEYH-MER----YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSA-ENYIMLS 135 (282)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~-~~~~~Li 135 (282)
...|+.-+.-+ +.|++++|.+.|+.+. -.| ..-+--.++-++.+.++.++|...+++.....|.++ .-|..-|
T Consensus 35 ~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 34555544443 5799999999999985 122 244556677789999999999999999998877543 5577777
Q ss_pred HHHHHcCchhhhhcccceeeecCeEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCccc
Q 043686 136 NWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSL 200 (282)
Q Consensus 136 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~ 200 (282)
.+.+..-.++...+ ......+|+..+..+..+-..+...||+..-+
T Consensus 114 kgLs~~~~i~~~~r-------------------Dq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i 159 (254)
T COG4105 114 KGLSYFFQIDDVTR-------------------DQSAARAAFAAFKELVQRYPNSRYAPDAKARI 159 (254)
T ss_pred HHHHHhccCCcccc-------------------CHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 77774443333321 12225677777778888888888888875543
No 233
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=90.68 E-value=8.8 Score=34.35 Aligned_cols=144 Identities=16% Similarity=0.114 Sum_probs=86.2
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCCCHH--HHHHHHHHHhcC---CCHHHHHHHhh--ccCCCChhHHH-HHHHHHH
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPL--TFAAVLHACSTA---GMVEEGWLCFN--RIRSPKVTHHA-LMVSVLA 73 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~--ty~~ll~a~~~~---g~~~~a~~l~~--~g~~p~~~~~~-~li~~~~ 73 (282)
+...|..|+++.|++|.+.-+...-+.||+. .-..|+.+-+.+ .+...|+..-. ..+.||.+--. .--.+|.
T Consensus 195 Le~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf 274 (531)
T COG3898 195 LEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALF 274 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHH
Confidence 4567888999999999888665344667664 334455443221 23444444433 66777754333 3346788
Q ss_pred ccCChHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH---hcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 74 RAGLFDEARIFIQEYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC---ELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 74 ~~g~~~~A~~l~~~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
+.|++-++-.+++.+- -.|-..+|. +..+.+.|+ .++.=++... .+.|++..+--++..+-...|++..|..
T Consensus 275 ~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa 350 (531)
T COG3898 275 RDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARA 350 (531)
T ss_pred hccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHH
Confidence 8899999988888763 233322221 222445554 3333344333 6788887777777777777777776654
No 234
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.57 E-value=0.48 Score=26.57 Aligned_cols=24 Identities=8% Similarity=0.194 Sum_probs=20.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHh
Q 043686 64 HHALMVSVLARAGLFDEARIFIQE 87 (282)
Q Consensus 64 ~~~~li~~~~~~g~~~~A~~l~~~ 87 (282)
+|+.|-..|.+.|++++|.++|++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 478889999999999999999987
No 235
>PRK15331 chaperone protein SicA; Provisional
Probab=90.50 E-value=1.3 Score=34.47 Aligned_cols=81 Identities=10% Similarity=-0.036 Sum_probs=51.0
Q ss_pred hcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CC-CCHHHHHHHHHHHHhcCChhHHHHH
Q 043686 42 STAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-ME-RYPEVLRALLEGCRIHVQVKTGKRV 116 (282)
Q Consensus 42 ~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~-p~~~~~~~li~~~~~~g~~~~A~~~ 116 (282)
-..|++++|..+|. .-..|. ..-+..|-.++-..+++++|...|...- +. -|...+-..-.+|...|+.++|...
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHH
Confidence 35677777777777 334442 2334466666666777777777776632 12 2344455566777777888888887
Q ss_pred HHHHHh
Q 043686 117 IDQLCE 122 (282)
Q Consensus 117 ~~~m~~ 122 (282)
|+...+
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 777665
No 236
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.33 E-value=0.71 Score=27.13 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=29.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHH
Q 043686 64 HHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALL 101 (282)
Q Consensus 64 ~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li 101 (282)
++..+-..|.+.|++++|+++|++.. ..|| ...|..|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 56778889999999999999999865 5665 66666543
No 237
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=89.84 E-value=2.2 Score=36.36 Aligned_cols=101 Identities=14% Similarity=0.073 Sum_probs=61.5
Q ss_pred cCCCChhHHHHHHHHHHc-----cCChHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCC----------------hhH
Q 043686 57 IRSPKVTHHALMVSVLAR-----AGLFDEARIFIQEYH---MERYPEVLRALLEGCRIHVQ----------------VKT 112 (282)
Q Consensus 57 g~~p~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~---~~p~~~~~~~li~~~~~~g~----------------~~~ 112 (282)
+-..|..+|-+.|.-+.. .++++=-...++.|. +..|..+|+.||..+=|..- -+-
T Consensus 62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C 141 (406)
T KOG3941|consen 62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNC 141 (406)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhH
Confidence 334455566666655532 244443333333333 66666777776666544332 235
Q ss_pred HHHHHHHHH--hcCCCChhHHHHHHHHHHHcCc-hhhhhcccceeeecC
Q 043686 113 GKRVIDQLC--ELKPLSAENYIMLSNWYAAEAK-WDVVNQAYSWIEFRN 158 (282)
Q Consensus 113 A~~~~~~m~--~~~p~~~~~~~~Li~~y~~~g~-~~~A~~~~~~~~~~~ 158 (282)
+..++++|. |+.|+. .+-..|++++++.+- ..+..+..-||+.-.
T Consensus 142 ~I~vLeqME~hGVmPdk-E~e~~lvn~FGr~~~p~~K~~Rm~yWmPkfk 189 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDK-EIEDILVNAFGRWNFPTKKVKRMLYWMPKFK 189 (406)
T ss_pred HHHHHHHHHHcCCCCch-HHHHHHHHHhccccccHHHHHHHHHhhhhhc
Confidence 788999998 778955 888899999988875 344455566665533
No 238
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.78 E-value=0.63 Score=25.79 Aligned_cols=24 Identities=8% Similarity=-0.086 Sum_probs=17.5
Q ss_pred CCC-HHHHHHHHHHHHhcCChhHHH
Q 043686 91 ERY-PEVLRALLEGCRIHVQVKTGK 114 (282)
Q Consensus 91 ~p~-~~~~~~li~~~~~~g~~~~A~ 114 (282)
.|+ ..+|+.|-..|.+.|++++|.
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 554 777777777777777777775
No 239
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.24 E-value=3 Score=31.91 Aligned_cols=79 Identities=14% Similarity=0.096 Sum_probs=49.9
Q ss_pred hHHHHHHHHHH---ccCChHHHHHHHHhcC-CCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHH
Q 043686 63 THHALMVSVLA---RAGLFDEARIFIQEYH-MERYP---EVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLS 135 (282)
Q Consensus 63 ~~~~~li~~~~---~~g~~~~A~~l~~~m~-~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li 135 (282)
.+-+.||+... ..++.++++.+++.|. ..|+. .++-..| +.+.|+|++|.++|++..+-.| . ..|..-+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~-~-~p~~kAL 83 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAG-A-PPYGKAL 83 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCC-C-chHHHHH
Confidence 34455555443 3688889999888886 56663 3333333 6778899999999988876555 2 3555555
Q ss_pred HHHHHcCchh
Q 043686 136 NWYAAEAKWD 145 (282)
Q Consensus 136 ~~y~~~g~~~ 145 (282)
-++|-...-|
T Consensus 84 ~A~CL~al~D 93 (153)
T TIGR02561 84 LALCLNAKGD 93 (153)
T ss_pred HHHHHHhcCC
Confidence 5555544333
No 240
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.90 E-value=13 Score=34.18 Aligned_cols=98 Identities=15% Similarity=0.101 Sum_probs=45.4
Q ss_pred hcCChHHHHHHHHH--hHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHH
Q 043686 7 LHGQRELGLSLFSE--LEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIF 84 (282)
Q Consensus 7 ~~g~~~~A~~lf~~--m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 84 (282)
-.|+++++.+..+. +. ..+ | ..-.+.++.-+-+.|..+.|.++-. |. ..-.+..-++|+++.|.++
T Consensus 273 ~~~d~~~v~~~i~~~~ll--~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~-----D~---~~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLL--PNI-P-KDQGQSIARFLEKKGYPELALQFVT-----DP---DHRFELALQLGNLDIALEI 340 (443)
T ss_dssp HTT-HHH-----HHHHTG--GG----HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHH
T ss_pred HcCChhhhhhhhhhhhhc--ccC-C-hhHHHHHHHHHHHCCCHHHHHhhcC-----Ch---HHHhHHHHhcCCHHHHHHH
Confidence 45677776666652 11 112 2 3447778888888888888887765 11 1223333344444444444
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043686 85 IQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQ 119 (282)
Q Consensus 85 ~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 119 (282)
-++.. +...|..|-....+.|+++-|++.|.+
T Consensus 341 a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 341 AKELD---DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp CCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 33322 334455555555555555555544443
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.79 E-value=5.5 Score=33.60 Aligned_cols=94 Identities=14% Similarity=0.099 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhh---ccCCCCh---hHHHHHHHHHHccCChHHHHHHHHhcC----CCCC-HHHHHHHH
Q 043686 33 TFAAVLHACSTAGMVEEGWLCFN---RIRSPKV---THHALMVSVLARAGLFDEARIFIQEYH----MERY-PEVLRALL 101 (282)
Q Consensus 33 ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~----~~p~-~~~~~~li 101 (282)
-|+.-++.+ ++|++.+|...|. .+.+-+. -.+-.|...+...|+.++|..+|..+. -.|- ..+.--|-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 466655543 4455777777777 2221122 234457777777788887777776653 1121 35666667
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686 102 EGCRIHVQVKTGKRVIDQLCELKPLS 127 (282)
Q Consensus 102 ~~~~~~g~~~~A~~~~~~m~~~~p~~ 127 (282)
.+..+.|+.++|...|++..+--|.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 77777777788888887777666654
No 242
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.79 E-value=1.1 Score=25.42 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 94 PEVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 94 ~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
..+++.|-..|...|++++|..++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3578888899999999999999999877
No 243
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.76 E-value=2.2 Score=37.92 Aligned_cols=81 Identities=15% Similarity=0.076 Sum_probs=57.9
Q ss_pred HHHHccCChHHHHHHHHhcC-----------------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHH
Q 043686 70 SVLARAGLFDEARIFIQEYH-----------------MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYI 132 (282)
Q Consensus 70 ~~~~~~g~~~~A~~l~~~m~-----------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ 132 (282)
+.|.|.|++..|..-|++.. -..-+.+++.|..+|.|.+++.+|.+.-.+..+++|+|+...-
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 46788888888888876621 1122467888999999999999999999999999998865444
Q ss_pred HHHHHHHHcCchhhhhcc
Q 043686 133 MLSNWYAAEAKWDVVNQA 150 (282)
Q Consensus 133 ~Li~~y~~~g~~~~A~~~ 150 (282)
==-.+|...|+++.|+..
T Consensus 296 RrG~A~l~~~e~~~A~~d 313 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDD 313 (397)
T ss_pred HHHHHHHhhccHHHHHHH
Confidence 334445555555555443
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=88.68 E-value=8.4 Score=28.81 Aligned_cols=82 Identities=7% Similarity=0.019 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHhh----ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 043686 34 FAAVLHACSTAGMVEEGWLCFN----RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQ 109 (282)
Q Consensus 34 y~~ll~a~~~~g~~~~a~~l~~----~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~ 109 (282)
...++..+.+.+........++ .+ ..+...+|.+|..|++.. -++..+.++. .++.+....+++-|-+.+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---ccccCCHHHHHHHHHHcCc
Confidence 4567777777788888888887 32 356778889999998763 3455566652 1223334446667777777
Q ss_pred hhHHHHHHHHH
Q 043686 110 VKTGKRVIDQL 120 (282)
Q Consensus 110 ~~~A~~~~~~m 120 (282)
++++..++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 77777777665
No 245
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=88.49 E-value=3.5 Score=30.98 Aligned_cols=83 Identities=13% Similarity=0.123 Sum_probs=56.8
Q ss_pred HHHccCChHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCChh---HHHHHHHHHHHcCch
Q 043686 71 VLARAGLFDEARIFIQEYH-M-ERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELK-PLSAE---NYIMLSNWYAAEAKW 144 (282)
Q Consensus 71 ~~~~~g~~~~A~~l~~~m~-~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-p~~~~---~~~~Li~~y~~~g~~ 144 (282)
+++..|+++.|.+.|.+.. + ..+...||.=-.++--.|+.++|+.=+.+..++. |.... +|.-=-..|-..|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 4567888888888888754 3 3457788888888888888888888888887653 32212 233333457777777
Q ss_pred hhhhcccce
Q 043686 145 DVVNQAYSW 153 (282)
Q Consensus 145 ~~A~~~~~~ 153 (282)
|+|..-|..
T Consensus 132 d~AR~DFe~ 140 (175)
T KOG4555|consen 132 DAARADFEA 140 (175)
T ss_pred HHHHHhHHH
Confidence 777664433
No 246
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.72 E-value=4.9 Score=31.83 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=9.5
Q ss_pred hhhcCChHHHHHHHHHhHH
Q 043686 5 YSLHGQRELGLSLFSELEK 23 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~ 23 (282)
|++.|+.++|++.|.++.+
T Consensus 46 ~~~~Gd~~~A~k~y~~~~~ 64 (177)
T PF10602_consen 46 YCKIGDLEEALKAYSRARD 64 (177)
T ss_pred HHHhhhHHHHHHHHHHHhh
Confidence 4445555555555555444
No 247
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=87.65 E-value=3.3 Score=40.45 Aligned_cols=99 Identities=12% Similarity=0.119 Sum_probs=76.7
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHH--
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDE-- 80 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~-- 80 (282)
+.|.|+.++|..+++.... .+.. |..|..++-..|.+.|..++|..+++ .+-.|+..-...+..+|.|.+.+.+
T Consensus 53 l~r~gk~~ea~~~Le~~~~-~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYG-LKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHHhcCchhHHHHHhhhcc-CCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999998765 4443 77899999999999999999999999 7788887788889999999887764
Q ss_pred --HHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 043686 81 --ARIFIQEYHMERYPEVLRALLEGCRIH 107 (282)
Q Consensus 81 --A~~l~~~m~~~p~~~~~~~li~~~~~~ 107 (282)
|.++++..+ .+.+.+-++++-+.+.
T Consensus 131 kaa~~LyK~~p--k~~yyfWsV~Slilqs 157 (932)
T KOG2053|consen 131 KAALQLYKNFP--KRAYYFWSVISLILQS 157 (932)
T ss_pred HHHHHHHHhCC--cccchHHHHHHHHHHh
Confidence 555665443 3355556666665544
No 248
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=87.64 E-value=3.7 Score=31.24 Aligned_cols=86 Identities=15% Similarity=0.076 Sum_probs=52.1
Q ss_pred hcCCCHHHHHHHhh-----ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC--HHHHHHHHHHHHhcCC---
Q 043686 42 STAGMVEEGWLCFN-----RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY--PEVLRALLEGCRIHVQ--- 109 (282)
Q Consensus 42 ~~~g~~~~a~~l~~-----~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~--~~~~~~li~~~~~~g~--- 109 (282)
.+.|++++|.+.|+ ....| .....--|+.+|.+.|++++|...+++.. ..|+ -+-|--.+.|++....
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~ 100 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEG 100 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhh
Confidence 45577888888887 22222 23455567888888888888888888743 3443 2334444444333222
Q ss_pred --------------hhHHHHHHHHHHhcCCCC
Q 043686 110 --------------VKTGKRVIDQLCELKPLS 127 (282)
Q Consensus 110 --------------~~~A~~~~~~m~~~~p~~ 127 (282)
..+|..-|+.....-|++
T Consensus 101 ~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 101 SLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 456777777777777744
No 249
>PRK11906 transcriptional regulator; Provisional
Probab=86.95 E-value=10 Score=34.68 Aligned_cols=121 Identities=9% Similarity=-0.040 Sum_probs=84.3
Q ss_pred HHH--HHHHHHHhcC-----CCHHHHHHHhh--c---cCCCC-hhHHHHHHHHHHc---------cCChHHHHHHHHhcC
Q 043686 32 LTF--AAVLHACSTA-----GMVEEGWLCFN--R---IRSPK-VTHHALMVSVLAR---------AGLFDEARIFIQEYH 89 (282)
Q Consensus 32 ~ty--~~ll~a~~~~-----g~~~~a~~l~~--~---g~~p~-~~~~~~li~~~~~---------~g~~~~A~~l~~~m~ 89 (282)
..| ..++.|.... -..+.|..+|. . .+.|+ ...|..+-.++.. .....+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 345 5566666552 23567788888 3 67776 5555555444322 234556666666543
Q ss_pred -CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccc
Q 043686 90 -MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYS 152 (282)
Q Consensus 90 -~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~ 152 (282)
+.| |..+...+-....-.++++.|...|++...++|+.+.+|...--...-+|+.++|.+..+
T Consensus 332 eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 332 DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555 467777777767777889999999999999999998888888777888999998877443
No 250
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.89 E-value=4.2 Score=39.06 Aligned_cols=127 Identities=14% Similarity=0.082 Sum_probs=91.5
Q ss_pred HHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCC
Q 043686 12 ELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHME 91 (282)
Q Consensus 12 ~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 91 (282)
.+-+++++.+....|..-.-.|.+-.+.-+...|...+|.++-..=--||...|=-=+.+++..+++++-+++-+.++ .
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk-s 743 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK-S 743 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC-C
Confidence 344555666554244444555666677777778888888888772233787888888888999999999888887776 2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 92 RYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 92 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
..-|--.+.+|.+.|+.++|.+++-.. .+ . .-.+.+|.+.|++.+|..
T Consensus 744 --PIGy~PFVe~c~~~~n~~EA~KYiprv---~~-l----~ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 744 --PIGYLPFVEACLKQGNKDEAKKYIPRV---GG-L----QEKVKAYLRVGDVKEAAD 791 (829)
T ss_pred --CCCchhHHHHHHhcccHHHHhhhhhcc---CC-h----HHHHHHHHHhccHHHHHH
Confidence 345667788899999999998887643 22 2 167888899999888877
No 251
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.86 E-value=1.3 Score=23.57 Aligned_cols=28 Identities=11% Similarity=-0.048 Sum_probs=22.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 043686 99 ALLEGCRIHVQVKTGKRVIDQLCELKPL 126 (282)
Q Consensus 99 ~li~~~~~~g~~~~A~~~~~~m~~~~p~ 126 (282)
.+..+|.+.|++++|.+.|++.....|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4566778888999999999988887774
No 252
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=86.69 E-value=13 Score=28.76 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=18.5
Q ss_pred HHhcCChhHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHcCchhh
Q 043686 104 CRIHVQVKTGKRVIDQLCELKPL-SAENYIMLSNWYAAEAKWDV 146 (282)
Q Consensus 104 ~~~~g~~~~A~~~~~~m~~~~p~-~~~~~~~Li~~y~~~g~~~~ 146 (282)
+...++.++|...+.+.....|. ....+..+...|...+..++
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE 220 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHH
Confidence 34444444444444444444443 23334444444444443333
No 253
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.61 E-value=1.6 Score=22.11 Aligned_cols=30 Identities=17% Similarity=0.084 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 043686 96 VLRALLEGCRIHVQVKTGKRVIDQLCELKP 125 (282)
Q Consensus 96 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~p 125 (282)
+|..+...|...|++++|...|+...+..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 566677778888888888888887776666
No 254
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.56 E-value=4.7 Score=31.93 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=28.8
Q ss_pred CCCC-HHHHHHHHHHHHhcC----C-------hhHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 043686 90 MERY-PEVLRALLEGCRIHV----Q-------VKTGKRVIDQLCELKPLSAENYIMLSNWYAA 140 (282)
Q Consensus 90 ~~p~-~~~~~~li~~~~~~g----~-------~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~ 140 (282)
+.|+ ..++..+-.+|...+ + +++|.+.|+.....+|.+ ..|..-+.+..+
T Consensus 64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~~k 125 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMAAK 125 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHT
T ss_pred cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHh
Confidence 6787 456655665554433 2 445555555666789977 888877776644
No 255
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=86.41 E-value=9.6 Score=35.28 Aligned_cols=111 Identities=13% Similarity=-0.006 Sum_probs=79.0
Q ss_pred cCChHHHHHHHHHhHHhCCCCCCHHHHHHHHH-HHhcCCCHHHHHHHhhccCC--C-----ChhHHHHHHHHHHccCChH
Q 043686 8 HGQRELGLSLFSELEKKSSIEIDPLTFAAVLH-ACSTAGMVEEGWLCFNRIRS--P-----KVTHHALMVSVLARAGLFD 79 (282)
Q Consensus 8 ~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~-a~~~~g~~~~a~~l~~~g~~--p-----~~~~~~~li~~~~~~g~~~ 79 (282)
....+.|.+++..+.. --|+..-|...-. .+...|++++|.+.|+..+. . ....+--+.-.+.-.++++
T Consensus 246 ~~~~~~a~~lL~~~~~---~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK---RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 5677889999999987 5699888777666 45567999999999992111 1 1223334556677789999
Q ss_pred HHHHHHHhcC-C-CCCHHHHHHHHHH-HHhcCCh-------hHHHHHHHHHH
Q 043686 80 EARIFIQEYH-M-ERYPEVLRALLEG-CRIHVQV-------KTGKRVIDQLC 121 (282)
Q Consensus 80 ~A~~l~~~m~-~-~p~~~~~~~li~~-~~~~g~~-------~~A~~~~~~m~ 121 (282)
+|.+.|..+. . .-...+|.-+..+ +...|+. ++|.++|++..
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 9999999986 1 2234455555443 5566777 88888888876
No 256
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=86.19 E-value=14 Score=28.59 Aligned_cols=143 Identities=17% Similarity=0.107 Sum_probs=97.4
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHH-HHhcCCCHHHHHHHhh--ccCCC----ChhHHHHHHHHHHccCC
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLH-ACSTAGMVEEGWLCFN--RIRSP----KVTHHALMVSVLARAGL 77 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~-a~~~~g~~~~a~~l~~--~g~~p----~~~~~~~li~~~~~~g~ 77 (282)
+...++..++.+.+..... ....+. ........ .+...|++++|...+. ....| ....+......+...++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (291)
T COG0457 105 LEALGKYEEALELLEKALA-LDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR 182 (291)
T ss_pred HHHHhhHHHHHHHHHHHHc-CCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcC
Confidence 3445566778888888765 333221 22222222 6888999999999999 22444 23444455555778899
Q ss_pred hHHHHHHHHhcC-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 78 FDEARIFIQEYH-MERY--PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 78 ~~~A~~l~~~m~-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
.+.|...+.+.. ..|+ ...+..+-..+...++.++|...+.......|.....+..+...+...+..+++..
T Consensus 183 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (291)
T COG0457 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALE 257 (291)
T ss_pred HHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHH
Confidence 999999998865 3444 67888899999999999999999999998888533455555555555555555544
No 257
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.09 E-value=11 Score=34.02 Aligned_cols=53 Identities=6% Similarity=-0.056 Sum_probs=29.3
Q ss_pred HccCChHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 043686 73 ARAGLFDEARIFIQEYH------MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKP 125 (282)
Q Consensus 73 ~~~g~~~~A~~l~~~m~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p 125 (282)
.|.|++.+|.+.+.+-. ..|++..|-..-....+.|+.++|..--++..+++|
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~ 318 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS 318 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence 45566666666665532 233344455555555666666666666665555555
No 258
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.80 E-value=17 Score=31.29 Aligned_cols=110 Identities=12% Similarity=0.089 Sum_probs=76.3
Q ss_pred HHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHHHHH---HHHHHHhcCChhH
Q 043686 39 HACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRA---LLEGCRIHVQVKT 112 (282)
Q Consensus 39 ~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~---li~~~~~~g~~~~ 112 (282)
......|++.+|..+|+ .-..| +...--.|..+|...|+++.|..++..++-.-...-|.. -|.-+.+.....+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 35667889999999888 33333 355667888999999999999999999983222223332 3444555555554
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 113 GKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 113 A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
...+-.+. .-+|+|...-..|...|.-.|+.++|..
T Consensus 222 ~~~l~~~~-aadPdd~~aa~~lA~~~~~~g~~e~Ale 257 (304)
T COG3118 222 IQDLQRRL-AADPDDVEAALALADQLHLVGRNEAALE 257 (304)
T ss_pred HHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 44443332 4578888888889999999999888866
No 259
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.12 E-value=7.3 Score=32.87 Aligned_cols=89 Identities=12% Similarity=0.070 Sum_probs=66.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---hhHHHHHH
Q 043686 64 HHALMVSVLARAGLFDEARIFIQEYH-MERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS---AENYIMLS 135 (282)
Q Consensus 64 ~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~---~~~~~~Li 135 (282)
-|+.-++.| +.|++.+|...|.... --|+ ...+--|..++...|++++|..+|..+.+-.|++ +.+.--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 588777665 5788999999998853 2232 3466679999999999999999999999655543 45666667
Q ss_pred HHHHHcCchhhhhcccce
Q 043686 136 NWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 136 ~~y~~~g~~~~A~~~~~~ 153 (282)
....+.|+-|+|...+..
T Consensus 223 ~~~~~l~~~d~A~atl~q 240 (262)
T COG1729 223 VSLGRLGNTDEACATLQQ 240 (262)
T ss_pred HHHHHhcCHHHHHHHHHH
Confidence 777788888888764443
No 260
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.94 E-value=5 Score=28.32 Aligned_cols=47 Identities=13% Similarity=0.054 Sum_probs=23.4
Q ss_pred ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC--CCCCHHHHHHHHH
Q 043686 56 RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH--MERYPEVLRALLE 102 (282)
Q Consensus 56 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~--~~p~~~~~~~li~ 102 (282)
..+.|+..+..+-+.++.|.+++..|.++|+..+ +..+..+|..++.
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 4455555555555555555555555555555433 3333334444443
No 261
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=83.76 E-value=19 Score=32.47 Aligned_cols=133 Identities=9% Similarity=-0.000 Sum_probs=84.9
Q ss_pred hcCChHHHHHHHHHhHHhCCCCCCHHHHHHHH-------------HHHhcCCCHHHHHHHhh--ccCC-----CChhHHH
Q 043686 7 LHGQRELGLSLFSELEKKSSIEIDPLTFAAVL-------------HACSTAGMVEEGWLCFN--RIRS-----PKVTHHA 66 (282)
Q Consensus 7 ~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll-------------~a~~~~g~~~~a~~l~~--~g~~-----p~~~~~~ 66 (282)
-.++.+.|...|.+-.+ +-|+...-.+.- +-..+.|++..|.+.+. .++. |+...|.
T Consensus 215 y~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~ 291 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYG 291 (486)
T ss_pred cccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHH
Confidence 35667788888888766 557665443322 23467899999999998 4444 4455566
Q ss_pred HHHHHHHccCChHHHHHHHHhcCCCCC-HHHHHHHHHH--HHhcCChhHHHHHHHHHHhcC--CCChhHHHHHHHHHHHc
Q 043686 67 LMVSVLARAGLFDEARIFIQEYHMERY-PEVLRALLEG--CRIHVQVKTGKRVIDQLCELK--PLSAENYIMLSNWYAAE 141 (282)
Q Consensus 67 ~li~~~~~~g~~~~A~~l~~~m~~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~--p~~~~~~~~Li~~y~~~ 141 (282)
..-....+.|+..+|..--++.. .-| ..++.-+..+ +.-.+.|++|.+-|+...+.. +..-.++.-...++-+.
T Consensus 292 nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkS 370 (486)
T KOG0550|consen 292 NRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKS 370 (486)
T ss_pred HhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 66677788999999998877754 333 4455555554 445588999999998876443 32334444444444444
Q ss_pred Cc
Q 043686 142 AK 143 (282)
Q Consensus 142 g~ 143 (282)
.+
T Consensus 371 kR 372 (486)
T KOG0550|consen 371 KR 372 (486)
T ss_pred hh
Confidence 33
No 262
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=83.66 E-value=2.5 Score=31.78 Aligned_cols=47 Identities=11% Similarity=-0.024 Sum_probs=42.7
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 103 GCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 103 ~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
+.+..|+++.|++.|.+...+.|..+..||.=..+|--.|+.++|..
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALd 98 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALD 98 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHH
Confidence 47788999999999999999999999999999999999999888865
No 263
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.61 E-value=2.1 Score=24.14 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHhc
Q 043686 62 VTHHALMVSVLARAGLFDEARIFIQEY 88 (282)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~l~~~m 88 (282)
..+++.|...|...|++++|.+++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHH
Confidence 357888999999999999999998874
No 264
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=83.60 E-value=22 Score=29.30 Aligned_cols=102 Identities=11% Similarity=0.042 Sum_probs=65.1
Q ss_pred HHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC---ChhHHH--HHHHHHHccCChHHHHHHHHh
Q 043686 15 LSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP---KVTHHA--LMVSVLARAGLFDEARIFIQE 87 (282)
Q Consensus 15 ~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p---~~~~~~--~li~~~~~~g~~~~A~~l~~~ 87 (282)
.+.-+++.. +.++..-+|.||--|.-.-.+.+|-+.|. .|+.| |..+++ .-|....+.|++++|.+....
T Consensus 13 ~~w~~~~~~---~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~ 89 (228)
T KOG2659|consen 13 EEWEEQLMK---VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQ 89 (228)
T ss_pred hhhHHHHhc---cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHH
Confidence 334444433 66777778887776666555666777776 67666 344444 566777888999999998888
Q ss_pred cC---CCCCHHHHHHHHH----HHHhcCChhHHHHHHHH
Q 043686 88 YH---MERYPEVLRALLE----GCRIHVQVKTGKRVIDQ 119 (282)
Q Consensus 88 m~---~~p~~~~~~~li~----~~~~~g~~~~A~~~~~~ 119 (282)
.. +.-|...+-.|.. -..|.|..++|++..+.
T Consensus 90 l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 90 LNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 64 4445434443332 25666777777776664
No 265
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.25 E-value=6 Score=34.29 Aligned_cols=78 Identities=8% Similarity=-0.038 Sum_probs=45.2
Q ss_pred cCChHHHHHHHHHhHHhC---CCCCCHHHHHHHHHHHhcCCCHHHHHHHhh----ccCCCChhHHHHHHHHHHccCChHH
Q 043686 8 HGQRELGLSLFSELEKKS---SIEIDPLTFAAVLHACSTAGMVEEGWLCFN----RIRSPKVTHHALMVSVLARAGLFDE 80 (282)
Q Consensus 8 ~g~~~~A~~lf~~m~~~~---g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~----~g~~p~~~~~~~li~~~~~~g~~~~ 80 (282)
..++++++..+-+++. . -..|+...|+ ++.-|- .=+.+++..+.. .|+-||.++++.+||.+-+.++..+
T Consensus 77 ~~~idd~~~~LyKlRh-s~~a~~~~~~~~~~-~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~ 153 (418)
T KOG4570|consen 77 REEIDDAEYYLYKLRH-SPNAWYLRNWTIHT-WIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKD 153 (418)
T ss_pred ccchhHHHHHHHHHhc-CcchhhhccccHHH-HHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHH
Confidence 4456666666666554 2 1333332222 222222 234556666665 7777777777777777777777777
Q ss_pred HHHHHHhc
Q 043686 81 ARIFIQEY 88 (282)
Q Consensus 81 A~~l~~~m 88 (282)
|.++.-.|
T Consensus 154 aa~vvt~~ 161 (418)
T KOG4570|consen 154 AASVVTEV 161 (418)
T ss_pred HHHHHHHH
Confidence 77766554
No 266
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=83.07 E-value=18 Score=27.36 Aligned_cols=112 Identities=14% Similarity=0.178 Sum_probs=47.7
Q ss_pred hhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-ccCCCCh--------------------hH
Q 043686 6 SLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-RIRSPKV--------------------TH 64 (282)
Q Consensus 6 ~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-~g~~p~~--------------------~~ 64 (282)
.-.|.+++..++..+... + .+..-||-+|--...+-+-+-..+.++ -|--.|. ..
T Consensus 13 ildG~V~qGveii~k~v~-S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~ 88 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVN-S---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEY 88 (161)
T ss_dssp HHTT-HHHHHHHHHHHHH-H---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HH
T ss_pred HHhchHHHHHHHHHHHcC-c---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHH
Confidence 346778888888888766 2 334445554433333333333333333 1111111 11
Q ss_pred HHHHHHHHHccCChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 65 HALMVSVLARAGLFDEARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 65 ~~~li~~~~~~g~~~~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
...-++.+.+.|+-|.-.++..+.. -+|+....-.+-++|.+.|+..+|.+++.+..
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 2222333444444444444444421 23444444455555555555555555555544
No 267
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.79 E-value=20 Score=27.82 Aligned_cols=114 Identities=15% Similarity=0.132 Sum_probs=65.0
Q ss_pred HHHHHHHH---HhcCCCHHHHHHHhh--ccCCCChhHHH-HHHHHHHccCChHHHHHHHHhcC-CCCCHHHHHHHHHHHH
Q 043686 33 TFAAVLHA---CSTAGMVEEGWLCFN--RIRSPKVTHHA-LMVSVLARAGLFDEARIFIQEYH-MERYPEVLRALLEGCR 105 (282)
Q Consensus 33 ty~~ll~a---~~~~g~~~~a~~l~~--~g~~p~~~~~~-~li~~~~~~g~~~~A~~l~~~m~-~~p~~~~~~~li~~~~ 105 (282)
+.+.||.. -.+.++.+++..++. +-+.|.....- .-.-.+.+.|++++|.++|+++. -.|....-.+|+..|-
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 44455443 345678999999998 77777643332 23344668899999999999986 3344344455555444
Q ss_pred hcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhh
Q 043686 106 IHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVN 148 (282)
Q Consensus 106 ~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~ 148 (282)
+..+=..=...-.++.+..| + ..-..|++.+-...+...|.
T Consensus 89 ~~~~D~~Wr~~A~evle~~~-d-~~a~~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 89 YALGDPSWRRYADEVLESGA-D-PDARALVRALLARADLEPAH 129 (160)
T ss_pred HHcCChHHHHHHHHHHhcCC-C-hHHHHHHHHHHHhccccchh
Confidence 44322222222333444444 3 34445666665555555443
No 268
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.69 E-value=5.1 Score=31.73 Aligned_cols=60 Identities=7% Similarity=-0.036 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHhcC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043686 63 THHALMVSVLARAGLFDEARIFIQEYH---MERY--PEVLRALLEGCRIHVQVKTGKRVIDQLCE 122 (282)
Q Consensus 63 ~~~~~li~~~~~~g~~~~A~~l~~~m~---~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 122 (282)
..+..+.+.|++.|+.+.|.+.|.++. ..|. +..+-.+|......+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 467789999999999999999999986 2333 56788899999999999999999998874
No 269
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.47 E-value=3.4 Score=33.85 Aligned_cols=72 Identities=13% Similarity=0.029 Sum_probs=47.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHh-cCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---hhHHHHHHH
Q 043686 65 HALMVSVLARAGLFDEARIFIQE-YHMER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS---AENYIMLSN 136 (282)
Q Consensus 65 ~~~li~~~~~~g~~~~A~~l~~~-m~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~---~~~~~~Li~ 136 (282)
.+.-|+.+-+.+.+.+|.....+ .+-+| |..+-..++.-||-.|+|++|..-++-.-.+.|.. ...|..+|+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34455666677778888877765 33344 46667778888888888888887777766777643 234544544
No 270
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.29 E-value=5.8 Score=28.28 Aligned_cols=47 Identities=13% Similarity=0.054 Sum_probs=23.9
Q ss_pred ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC--CCCCHHHHHHHHH
Q 043686 56 RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH--MERYPEVLRALLE 102 (282)
Q Consensus 56 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~--~~p~~~~~~~li~ 102 (282)
..+.|+..+..+-+.++.|.+++..|.++|+..+ +.+...+|..++.
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 5555666666666666666666666666666554 3333335555544
No 271
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=82.24 E-value=5.9 Score=37.66 Aligned_cols=46 Identities=17% Similarity=0.047 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-ccCCC
Q 043686 11 RELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-RIRSP 60 (282)
Q Consensus 11 ~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-~g~~p 60 (282)
+-+-+.-+++|++ .|-.||..-.. ..|+-.|.+.+|-++|. .|.+.
T Consensus 616 ~L~li~EL~~~k~-rge~P~~iLlA---~~~Ay~gKF~EAAklFk~~G~en 662 (1081)
T KOG1538|consen 616 YLELISELEERKK-RGETPNDLLLA---DVFAYQGKFHEAAKLFKRSGHEN 662 (1081)
T ss_pred HHHHHHHHHHHHh-cCCCchHHHHH---HHHHhhhhHHHHHHHHHHcCchh
Confidence 3455556777888 88889876433 34677788999999888 55443
No 272
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=82.16 E-value=1.8 Score=23.48 Aligned_cols=31 Identities=13% Similarity=0.076 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHhcC-CCCC
Q 043686 63 THHALMVSVLARAGLFDEARIFIQEYH-MERY 93 (282)
Q Consensus 63 ~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~ 93 (282)
.+|..+...|...|++++|.+.|++.. +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 467788888899999999999888753 5554
No 273
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=81.79 E-value=12 Score=31.97 Aligned_cols=59 Identities=10% Similarity=0.018 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CC-CChhHHHHHHHHHHHcCchhhhhc
Q 043686 91 ERYPEVLRALLEGCRIHVQVKTGKRVIDQLCEL-KP-LSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 91 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~p-~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
.++..+--++|..++..++|.+-.++++.-... .| .|...|..+|+.-.+.|+..-..+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence 344555566666666666766665555554421 22 234666777777777776665555
No 274
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.17 E-value=2.8 Score=36.66 Aligned_cols=86 Identities=14% Similarity=0.123 Sum_probs=46.6
Q ss_pred HhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CC-CCHHHHHHHHHHHHhcCChhHHHH
Q 043686 41 CSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-ME-RYPEVLRALLEGCRIHVQVKTGKR 115 (282)
Q Consensus 41 ~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~-p~~~~~~~li~~~~~~g~~~~A~~ 115 (282)
|-+.|.+++|...+. ..+.| |.++|..--.+|.+...+..|+.=-.... .. .-+-.|+-=..+-...|..++|.+
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKk 186 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKK 186 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 556677777777776 44555 66667666667777666665554333322 01 112334433444344445555555
Q ss_pred HHHHHHhcCCC
Q 043686 116 VIDQLCELKPL 126 (282)
Q Consensus 116 ~~~~m~~~~p~ 126 (282)
=++...+++|.
T Consensus 187 D~E~vL~LEP~ 197 (536)
T KOG4648|consen 187 DCETVLALEPK 197 (536)
T ss_pred hHHHHHhhCcc
Confidence 55555566774
No 275
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=81.01 E-value=25 Score=32.50 Aligned_cols=14 Identities=14% Similarity=-0.035 Sum_probs=9.5
Q ss_pred ChHHHHHHHHHhHH
Q 043686 10 QRELGLSLFSELEK 23 (282)
Q Consensus 10 ~~~~A~~lf~~m~~ 23 (282)
-+.+|.++|++-.+
T Consensus 215 Ti~Eae~l~rqAvk 228 (539)
T PF04184_consen 215 TIVEAEELLRQAVK 228 (539)
T ss_pred CHHHHHHHHHHHHH
Confidence 35677777777654
No 276
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.88 E-value=7 Score=24.18 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=23.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686 100 LLEGCRIHVQVKTGKRVIDQLCELKPLS 127 (282)
Q Consensus 100 li~~~~~~g~~~~A~~~~~~m~~~~p~~ 127 (282)
|--|+.+.|++++|.+..+.+.+++|+|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 5567899999999999999999999987
No 277
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=79.67 E-value=5.1 Score=20.94 Aligned_cols=29 Identities=14% Similarity=0.296 Sum_probs=21.7
Q ss_pred CChhHHHHHHHHHHhcCCCChhHHHHHHH
Q 043686 108 VQVKTGKRVIDQLCELKPLSAENYIMLSN 136 (282)
Q Consensus 108 g~~~~A~~~~~~m~~~~p~~~~~~~~Li~ 136 (282)
|+.++|..+|+.+....|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888777777777776554
No 278
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=79.32 E-value=13 Score=30.67 Aligned_cols=70 Identities=16% Similarity=0.064 Sum_probs=39.4
Q ss_pred ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHhcCCC
Q 043686 56 RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MERYPEVLRALLEG--CRIHVQVKTGKRVIDQLCELKPL 126 (282)
Q Consensus 56 ~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~p~ 126 (282)
..+.|+ ..+||-|.--+...|++|.|.+.|+..- ..|. .-|..+=.| +.-.|+++-|.+=|...-+-+|.
T Consensus 92 Lai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~ 165 (297)
T COG4785 92 LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN 165 (297)
T ss_pred hhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHHHHHHHhcCCC
Confidence 456666 5567777777777777777777777643 3342 223333222 33346666666655554444443
No 279
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.03 E-value=10 Score=30.35 Aligned_cols=59 Identities=8% Similarity=0.064 Sum_probs=43.1
Q ss_pred HHHHHHHccCChHHHHHHHH---hcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 043686 67 LMVSVLARAGLFDEARIFIQ---EYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKP 125 (282)
Q Consensus 67 ~li~~~~~~g~~~~A~~l~~---~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p 125 (282)
..+.......+.+......+ +.. ..|+..+|..++..+...|+.++|.+...++...-|
T Consensus 113 ~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 113 ALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33333334444443333333 322 689999999999999999999999999999999988
No 280
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=78.96 E-value=16 Score=32.64 Aligned_cols=74 Identities=4% Similarity=-0.040 Sum_probs=53.3
Q ss_pred HHHHHHHccCChHHHHHHHHhcCCCCC------HHHHHHHHHHHHh---cCChhHHHHHHHHHH-hcCCCChhHHHHHHH
Q 043686 67 LMVSVLARAGLFDEARIFIQEYHMERY------PEVLRALLEGCRI---HVQVKTGKRVIDQLC-ELKPLSAENYIMLSN 136 (282)
Q Consensus 67 ~li~~~~~~g~~~~A~~l~~~m~~~p~------~~~~~~li~~~~~---~g~~~~A~~~~~~m~-~~~p~~~~~~~~Li~ 136 (282)
.|+-.|....+++...++++.++-.|+ ..+---..-++.+ .|+.++|.+++..+. ...+.++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 555679999999999999999872332 1111123335566 899999999999954 556667789988887
Q ss_pred HHHH
Q 043686 137 WYAA 140 (282)
Q Consensus 137 ~y~~ 140 (282)
.|..
T Consensus 226 IyKD 229 (374)
T PF13281_consen 226 IYKD 229 (374)
T ss_pred HHHH
Confidence 7754
No 281
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.69 E-value=4 Score=35.32 Aligned_cols=44 Identities=9% Similarity=0.024 Sum_probs=25.0
Q ss_pred hHHHHHHHHh-cC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 78 FDEARIFIQE-YH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 78 ~~~A~~l~~~-m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
.+++.-++.. ++ +-||..+++.||+.+.+.+++.+|.++...|.
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3444444443 22 45666666666666666666666666665554
No 282
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.65 E-value=5 Score=28.62 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCChhHHHHHHH
Q 043686 90 MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC-ELKPLSAENYIMLSN 136 (282)
Q Consensus 90 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~p~~~~~~~~Li~ 136 (282)
..|+..+..+.+.+|-|.+++.-|.++|+-.+ ++.+ ....|.-++.
T Consensus 41 lVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~-~~~~Y~~~lq 87 (108)
T PF02284_consen 41 LVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN-KKEIYPYILQ 87 (108)
T ss_dssp B---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT--TTHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-hHHHHHHHHH
Confidence 56777777777777777777777777777776 4443 2235554443
No 283
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.62 E-value=40 Score=28.76 Aligned_cols=116 Identities=9% Similarity=-0.020 Sum_probs=67.7
Q ss_pred HHHHHHhcCCCHHHHHHHhh----ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC--------CCCCHHHHHHHHHH
Q 043686 36 AVLHACSTAGMVEEGWLCFN----RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH--------MERYPEVLRALLEG 103 (282)
Q Consensus 36 ~ll~a~~~~g~~~~a~~l~~----~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~--------~~p~~~~~~~li~~ 103 (282)
++++.+--.|.+.-...++. ..-+-+...-+.|...-.+.|+++.|...|+... ++-+..+--..-..
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 34444333444444444444 2223355666677777778899999999998542 22222222233344
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCChhHHH--HHHHHHHHcCchhhhhcccce
Q 043686 104 CRIHVQVKTGKRVIDQLCELKPLSAENYI--MLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 104 ~~~~g~~~~A~~~~~~m~~~~p~~~~~~~--~Li~~y~~~g~~~~A~~~~~~ 153 (282)
|.-..++-.|.+.|.+....+|.++..-| +|+-+| .|++.+|.+..+.
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY--lg~l~DAiK~~e~ 311 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY--LGKLKDALKQLEA 311 (366)
T ss_pred eecccchHHHHHHHhhccccCCCchhhhchHHHHHHH--HHHHHHHHHHHHH
Confidence 66667788888888888888877755444 555555 4566666654443
No 284
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.35 E-value=9.2 Score=27.02 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 90 MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 90 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
..|+..+-.+-+.+|-|.+++--|.++|+-.+
T Consensus 38 lVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 38 LVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45555556666666666666666666666555
No 285
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.91 E-value=4.8 Score=38.69 Aligned_cols=113 Identities=8% Similarity=-0.104 Sum_probs=81.7
Q ss_pred ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHH
Q 043686 56 RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLS 135 (282)
Q Consensus 56 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li 135 (282)
.|..-...|.+--|.-+...|+..+|.++-.+.+ .||-..|--=+.+++..++|++-+++-+.++. | .-|--++
T Consensus 678 ~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~~kweeLekfAkskks--P---IGy~PFV 751 (829)
T KOG2280|consen 678 FGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADIKKWEELEKFAKSKKS--P---IGYLPFV 751 (829)
T ss_pred hccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC--C---CCchhHH
Confidence 4444444444444455566799999999999999 89999999999999999999976665554431 4 7888899
Q ss_pred HHHHHcCchhhhhcccceeeecCeEEEEecCCCCCCChHHHH
Q 043686 136 NWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIF 177 (282)
Q Consensus 136 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~ 177 (282)
.++.+.|+.++|.+-+....... .-..+|...|.+.+|.
T Consensus 752 e~c~~~~n~~EA~KYiprv~~l~---ekv~ay~~~~~~~eAa 790 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGGLQ---EKVKAYLRVGDVKEAA 790 (829)
T ss_pred HHHHhcccHHHHhhhhhccCChH---HHHHHHHHhccHHHHH
Confidence 99999999999988665543322 2334455666666665
No 286
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=77.53 E-value=44 Score=30.67 Aligned_cols=136 Identities=9% Similarity=-0.009 Sum_probs=83.4
Q ss_pred hhcCChHHHHHHHHHhHHhCCCCCC------HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHH--Hcc
Q 043686 6 SLHGQRELGLSLFSELEKKSSIEID------PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVL--ARA 75 (282)
Q Consensus 6 ~~~g~~~~A~~lf~~m~~~~g~~p~------~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~--~~~ 75 (282)
-+.++..+|.++|.+.-. + ...+ .+--+-+|+||--.. ++.-..... ....| ...|-.|..++ -+.
T Consensus 17 qkq~~~~esEkifskI~~-e-~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYD-E-KESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHH-H-hhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHh
Confidence 467889999999999865 2 2222 233445777776543 222222222 23333 22344444443 467
Q ss_pred CChHHHHHHHHhcC-----------------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-cCC----CChhHHHH
Q 043686 76 GLFDEARIFIQEYH-----------------MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCE-LKP----LSAENYIM 133 (282)
Q Consensus 76 g~~~~A~~l~~~m~-----------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~p----~~~~~~~~ 133 (282)
+++++|.+.+.... .-+|..-=+..+.++...|++.++..++.+|.. +-| =++.+|+-
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 88888888876532 112233346777889999999999999999982 322 25688988
Q ss_pred HHHHHHHcCchh
Q 043686 134 LSNWYAAEAKWD 145 (282)
Q Consensus 134 Li~~y~~~g~~~ 145 (282)
++-+|++.=-++
T Consensus 173 ~vlmlsrSYfLE 184 (549)
T PF07079_consen 173 AVLMLSRSYFLE 184 (549)
T ss_pred HHHHHhHHHHHH
Confidence 877777764443
No 287
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=77.44 E-value=22 Score=32.49 Aligned_cols=184 Identities=10% Similarity=0.005 Sum_probs=91.6
Q ss_pred ChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc-----
Q 043686 77 LFDEARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ----- 149 (282)
Q Consensus 77 ~~~~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~----- 149 (282)
.+++-.++++... -.+| .-.+-|++|-|.+++++|.+.+++-.+.+++--.-|=.+-.++..+.++-++..
T Consensus 69 ~~~e~i~lL~~l~~~g~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQv 146 (480)
T TIGR01503 69 LLDEHIELLRTLQEEGGAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQI 146 (480)
T ss_pred cHHHHHHHHHHHHHccCCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeec
Confidence 4555555555544 1233 334456777777777777777776653222110011111111112222111111
Q ss_pred -----------------ccceeeecCeEEEEecCCCCCCChHHHHHHH---HHHHHHHHhCCCccCCCcccccchhhhhh
Q 043686 150 -----------------AYSWIEFRNKVHVFGTGDVSCPRSEGIFWEL---QSLMKKMEGDSLRPKPDFSLHYVDEERKW 209 (282)
Q Consensus 150 -----------------~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~---~~l~~~M~~~g~~pd~~t~~~~~~~~~~~ 209 (282)
.++.++-..+ ++..-|++.--.++++..+ ++|...-.+.|+..|.-+|-.+....+-.
T Consensus 147 RHGtpDarlL~e~~~a~G~~a~EGG~I--SYnlPYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtLvPP 224 (480)
T TIGR01503 147 RHGTPDARLLAEIILAGGFTSFEGGGI--SYNIPYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTLVPP 224 (480)
T ss_pred cCCCCcHHHHHHHHHHcCCCccCCCcc--eeccccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCccCh
Confidence 3344433333 3344566666677766555 46666667789998998886554443333
Q ss_pred hhhh---hhH-HHHHHhhhccCCCCCeEEEeeccccccchH---H--------HHHHHHHhhcceEEeecCCccccccCC
Q 043686 210 TQIG---HSE-ILALSFGLISTQVGATIHVTKNLRMRHICH---D--------FAKAISKMVEGEIIIKDPSCFHHFEYG 274 (282)
Q Consensus 210 ~~~~---~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~--------a~~~~~~m~~~~~~~~~~~~~~~~~~~ 274 (282)
.... -.| .++..+|+- .|.=+|..||++. . +.+++.++.-.++.+- ..||++.-|
T Consensus 225 sisiav~ilE~Lla~eqGVk--------sisvgy~Q~Gn~~QDiaai~aL~~l~~eYl~~~g~~Dv~i~--tV~hqwMG~ 294 (480)
T TIGR01503 225 SISNAIGIIEGLLAAEQGVK--------NITVGYGQVGNLTQDIAALRALEEQTNEYLKAYGYNDVFVT--TVFHQWMGG 294 (480)
T ss_pred HHHHHHHHHHHHHHHHcCCe--------EEEeccccCCChHHHHHHHHHHHHHHHHHHHhCCCCceEEE--EEeeeccCC
Confidence 2221 111 233445544 4677888999874 3 3444444433444332 345665543
No 288
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=77.21 E-value=3.2 Score=22.24 Aligned_cols=29 Identities=10% Similarity=0.185 Sum_probs=20.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHhcC-CCC
Q 043686 64 HHALMVSVLARAGLFDEARIFIQEYH-MER 92 (282)
Q Consensus 64 ~~~~li~~~~~~g~~~~A~~l~~~m~-~~p 92 (282)
.|..+-..|.+.|++++|.+.|++.. +.|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 46667778888888888888888743 344
No 289
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=76.88 E-value=9 Score=33.67 Aligned_cols=44 Identities=14% Similarity=0.099 Sum_probs=25.4
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHH
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGW 51 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~ 51 (282)
|.+.|.+++|++.|..-.. +.| |.++|..=-.||.+...+..|.
T Consensus 107 yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE 151 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAE 151 (536)
T ss_pred hhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHH
Confidence 5566666666666665433 445 6666666666666655554443
No 290
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.75 E-value=33 Score=27.68 Aligned_cols=87 Identities=9% Similarity=-0.054 Sum_probs=57.6
Q ss_pred HHHHhcCCCHHHHHHHhhccC-CCChhHHHHHH-----HHHHccCChHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCC
Q 043686 38 LHACSTAGMVEEGWLCFNRIR-SPKVTHHALMV-----SVLARAGLFDEARIFIQEYHMERYPEV--LRALLEGCRIHVQ 109 (282)
Q Consensus 38 l~a~~~~g~~~~a~~l~~~g~-~p~~~~~~~li-----~~~~~~g~~~~A~~l~~~m~~~p~~~~--~~~li~~~~~~g~ 109 (282)
-+++...+++++|..-++..+ .|....+.+++ ......|.+|+|.++++..+ .++-.. .-.--+.+...|+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~kg~ 174 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHHcCc
Confidence 346777888888888888222 34444555554 34566788888888888876 555333 2222345888888
Q ss_pred hhHHHHHHHHHHhcCC
Q 043686 110 VKTGKRVIDQLCELKP 125 (282)
Q Consensus 110 ~~~A~~~~~~m~~~~p 125 (282)
-++|...|++..+..+
T Consensus 175 k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 175 KQEARAAYEKALESDA 190 (207)
T ss_pred hHHHHHHHHHHHHccC
Confidence 8888888888886654
No 291
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.66 E-value=41 Score=29.67 Aligned_cols=110 Identities=14% Similarity=0.046 Sum_probs=61.9
Q ss_pred hcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHH----HHHHHHHccCChH
Q 043686 7 LHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHA----LMVSVLARAGLFD 79 (282)
Q Consensus 7 ~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~----~li~~~~~~g~~~ 79 (282)
.+|+..+|-..++++.+ ..+.|...++-.=.+|...|+.+.-+..++ -.-.||...|+ ..--++-.+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 35666666667777654 255566667766777777777766666666 22244443333 3333445677777
Q ss_pred HHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 043686 80 EARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVID 118 (282)
Q Consensus 80 ~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 118 (282)
+|++.-++-- +.| |.-+-.++-..+--.|+..++.+...
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 7777776632 333 23333444444445555555555544
No 292
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=76.19 E-value=0.9 Score=34.30 Aligned_cols=78 Identities=14% Similarity=0.160 Sum_probs=42.6
Q ss_pred HHHHHhcCCCHHHHHHHhh----ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhH
Q 043686 37 VLHACSTAGMVEEGWLCFN----RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKT 112 (282)
Q Consensus 37 ll~a~~~~g~~~~a~~l~~----~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~ 112 (282)
++..+.+.+.++.....++ .+...+....+.++..|++.++.++..++++... . .-...++.-|.+.|.+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-N---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-S---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-c---cCHHHHHHHHHhcchHHH
Confidence 4555555666666655555 2233456677777777777777777777766433 1 122334445555555554
Q ss_pred HHHHHH
Q 043686 113 GKRVID 118 (282)
Q Consensus 113 A~~~~~ 118 (282)
|.-++.
T Consensus 89 a~~Ly~ 94 (143)
T PF00637_consen 89 AVYLYS 94 (143)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 293
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.92 E-value=36 Score=28.61 Aligned_cols=55 Identities=13% Similarity=0.080 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh----cCCCChhHHHHHHHHHHHcCchhhhhcccc
Q 043686 97 LRALLEGCRIHVQVKTGKRVIDQLCE----LKPLSAENYIMLSNWYAAEAKWDVVNQAYS 152 (282)
Q Consensus 97 ~~~li~~~~~~g~~~~A~~~~~~m~~----~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~ 152 (282)
|-+.|-.|--..++..|++.+++-.+ +.|.+..+...|+.+| ..|+.+++.++.+
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 44444445555567777777776432 3455666777777777 5566666555443
No 294
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.74 E-value=23 Score=28.65 Aligned_cols=73 Identities=10% Similarity=-0.034 Sum_probs=49.5
Q ss_pred HhcCCCHHHHHHHhh---ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCChh
Q 043686 41 CSTAGMVEEGWLCFN---RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH------MERYPEVLRALLEGCRIHVQVK 111 (282)
Q Consensus 41 ~~~~g~~~~a~~l~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~------~~p~~~~~~~li~~~~~~g~~~ 111 (282)
+++.|+-+.-.+++. .+.--++...-+|-..|. ..+.++|..++...- -.+|...+.+|.+.|-+.|+.+
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 566666544444444 333345566666666666 567888888887632 2567888999999999999988
Q ss_pred HHH
Q 043686 112 TGK 114 (282)
Q Consensus 112 ~A~ 114 (282)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 875
No 295
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.44 E-value=5.3 Score=20.37 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=8.1
Q ss_pred HHHHHHccCChHHHHHHH
Q 043686 68 MVSVLARAGLFDEARIFI 85 (282)
Q Consensus 68 li~~~~~~g~~~~A~~l~ 85 (282)
+-..+...|+.++|+.++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 334444444444444443
No 296
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.91 E-value=60 Score=28.72 Aligned_cols=107 Identities=6% Similarity=-0.081 Sum_probs=80.7
Q ss_pred CCCHHHHHHHhh---ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC--CCCCHHHHHH----HHHHHHhcCChhHHH
Q 043686 44 AGMVEEGWLCFN---RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH--MERYPEVLRA----LLEGCRIHVQVKTGK 114 (282)
Q Consensus 44 ~g~~~~a~~l~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~--~~p~~~~~~~----li~~~~~~g~~~~A~ 114 (282)
.|...+|...++ ...+-|...++--=+++...|+.+.-...++++- ..||...|.. .--++...|-+++|+
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 455666666665 5555577888888889999999999999998864 5677543332 233566779999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcc
Q 043686 115 RVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQA 150 (282)
Q Consensus 115 ~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~ 150 (282)
+.-++..+++|.+.=+-.++.+.+--.|+..++.+.
T Consensus 196 k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eF 231 (491)
T KOG2610|consen 196 KQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEF 231 (491)
T ss_pred HHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHH
Confidence 999999999998766666777888888888888773
No 297
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=74.52 E-value=24 Score=25.41 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=29.4
Q ss_pred ChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043686 77 LFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCE 122 (282)
Q Consensus 77 ~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 122 (282)
+++++++.+.+-. -|..|+.-|...|..++|++++.+...
T Consensus 28 ~~~~~e~~L~~~~------~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 28 DLEEVEEVLKEHG------KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHHcC------CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4455555554443 588888889999999999999888764
No 298
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=73.74 E-value=78 Score=29.48 Aligned_cols=69 Identities=12% Similarity=0.104 Sum_probs=47.4
Q ss_pred HHHHHHHccCChHHHHHHHHhcC--CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCC-hhHHHHHH
Q 043686 67 LMVSVLARAGLFDEARIFIQEYH--MER--YPEVLRALLEGCRIHVQVKTGKRVIDQLCEL-KPLS-AENYIMLS 135 (282)
Q Consensus 67 ~li~~~~~~g~~~~A~~l~~~m~--~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~p~~-~~~~~~Li 135 (282)
-|-.+.-+.|+.++|.+.|++|. ..+ +..+...||.++-..+++.+++.++.+-..+ -|.+ ...|+..+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 45555667799999999988864 222 2457777899999999999999888876543 2433 34565433
No 299
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=72.57 E-value=33 Score=27.77 Aligned_cols=74 Identities=18% Similarity=0.134 Sum_probs=52.7
Q ss_pred HccCChHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CC---CChhHHHHHHHHHHHcCchh
Q 043686 73 ARAGLFDEARIFIQEYHMER---YPEVLRALLEGCRIHVQVKTGKRVIDQLCEL-KP---LSAENYIMLSNWYAAEAKWD 145 (282)
Q Consensus 73 ~~~g~~~~A~~l~~~m~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~p---~~~~~~~~Li~~y~~~g~~~ 145 (282)
.+.|+ +.|.+.|-.+.-.| ++.....|.+-|. ..+.++|..++-+..++ .| .|+..+.+|.+.|-+.|+.+
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 44555 56777777765222 3445555554454 66899999999999853 22 26789999999999999999
Q ss_pred hhh
Q 043686 146 VVN 148 (282)
Q Consensus 146 ~A~ 148 (282)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 884
No 300
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=72.23 E-value=23 Score=33.96 Aligned_cols=83 Identities=10% Similarity=-0.003 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhh-ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCCHHH-----------HHH
Q 043686 33 TFAAVLHACSTAGMVEEGWLCFN-RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH-MERYPEV-----------LRA 99 (282)
Q Consensus 33 ty~~ll~a~~~~g~~~~a~~l~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~~~~-----------~~~ 99 (282)
+.-.+-.-+-+...+.-|-++|. .| -...+++.....+++++|..+-+..| ..||+.. |--
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~g------D~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeE 822 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMG------DLKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEE 822 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhc------cHHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHH
Confidence 33333333445566677777777 22 23468899999999999999999988 6777543 222
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 043686 100 LLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 100 li~~~~~~g~~~~A~~~~~~m~ 121 (282)
--.+|.+.|+-.+|.+++++..
T Consensus 823 AqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 823 AQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred HHHHHHHhcchHHHHHHHHHhh
Confidence 3346777777777777777665
No 301
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=72.00 E-value=14 Score=26.68 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHhcC
Q 043686 63 THHALMVSVLARAGLFDEARIFIQEYH 89 (282)
Q Consensus 63 ~~~~~li~~~~~~g~~~~A~~l~~~m~ 89 (282)
.-|..|+..|...|..++|.+++.+..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLA 66 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHh
Confidence 358999999999999999999998865
No 302
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.85 E-value=20 Score=29.54 Aligned_cols=51 Identities=14% Similarity=-0.010 Sum_probs=28.8
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN 55 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~ 55 (282)
|+.+.+.++..+|+.+.++-.+ -+|+ .-+-..+++-+|-.|+.++|..-++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVk---akPtda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVK---AKPTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHh---cCCccccchhHHHHHHhhcchHHHHHHHHH
Confidence 3455566666666666666544 2333 2344455566666666666665555
No 303
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=71.09 E-value=69 Score=27.73 Aligned_cols=137 Identities=10% Similarity=0.026 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhc--CCCHHHHHHHhh----ccCCCChhHHHH--HHHHHHccC----ChHHHHHHHHhcC------CCC
Q 043686 31 PLTFAAVLHACST--AGMVEEGWLCFN----RIRSPKVTHHAL--MVSVLARAG----LFDEARIFIQEYH------MER 92 (282)
Q Consensus 31 ~~ty~~ll~a~~~--~g~~~~a~~l~~----~g~~p~~~~~~~--li~~~~~~g----~~~~A~~l~~~m~------~~p 92 (282)
..++.+++..-.. ...+++..++++ .|+.-+..+|-+ +|.-..... ...+|.++|+.|+ -.|
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~ 139 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP 139 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc
Confidence 4566666666555 234556666665 667777666654 222222222 4568899999997 346
Q ss_pred CHHHHHHHHHHHHhcCC----hhHHHHHHHHHHh--cCCCChhHHHHHHHHHHHcCchhhhhcccceeeecCeEEEEecC
Q 043686 93 YPEVLRALLEGCRIHVQ----VKTGKRVIDQLCE--LKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGTG 166 (282)
Q Consensus 93 ~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~--~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~i~~ 166 (282)
+-+++.+|+.. +.++ .++++.+|+.+.+ ..+.|..-+.+-+-+++...
T Consensus 140 ~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~------------------------ 193 (297)
T PF13170_consen 140 EDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGD------------------------ 193 (297)
T ss_pred cchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhcccc------------------------
Confidence 67888888877 3333 3456666666663 44434222222222221111
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhCCCccCCCcc
Q 043686 167 DVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFS 199 (282)
Q Consensus 167 ~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~ 199 (282)
.-+. .+.+.++++.+++.|+++....|
T Consensus 194 -----~~~~-v~r~~~l~~~l~~~~~kik~~~y 220 (297)
T PF13170_consen 194 -----DQEK-VARVIELYNALKKNGVKIKYMHY 220 (297)
T ss_pred -----chHH-HHHHHHHHHHHHHcCCccccccc
Confidence 1112 34445999999999999887665
No 304
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=67.85 E-value=51 Score=24.99 Aligned_cols=76 Identities=12% Similarity=0.062 Sum_probs=50.4
Q ss_pred hcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHHHHHHHccCChHHHHH
Q 043686 7 LHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALMVSVLARAGLFDEARI 83 (282)
Q Consensus 7 ~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~ 83 (282)
..|++.+.+.-+..+-. +..-...-++.+.+.|+-++--++.. ..-.|++...-.+-.+|.+.|+..+|.+
T Consensus 68 ~C~NlKrVi~C~~~~n~------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~e 141 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRNK------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANE 141 (161)
T ss_dssp G-S-THHHHHHHHHTT---------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred hhcchHHHHHHHHHhcc------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHH
Confidence 45566666666655433 45567778888889998888777777 2456777888889999999999999999
Q ss_pred HHHhc
Q 043686 84 FIQEY 88 (282)
Q Consensus 84 l~~~m 88 (282)
++++.
T Consensus 142 ll~~A 146 (161)
T PF09205_consen 142 LLKEA 146 (161)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 305
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=67.73 E-value=2.2 Score=39.09 Aligned_cols=72 Identities=10% Similarity=-0.050 Sum_probs=40.0
Q ss_pred HhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043686 41 CSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQL 120 (282)
Q Consensus 41 ~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 120 (282)
..+.|+++.|.++-+ -.++...|..|-+..-+.|+++-|++.|.+.+ -|..|+--|.-.|+.++-.++-+..
T Consensus 328 Al~lg~L~~A~~~a~--~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 328 ALQLGNLDIALEIAK--ELDDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHCT-HHHHHHHCC--CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHH--hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHH
Confidence 335566666666655 11245566666666666666666666666655 3555555566666655544444433
No 306
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=67.28 E-value=31 Score=31.65 Aligned_cols=101 Identities=11% Similarity=0.080 Sum_probs=62.7
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHH--HhcCCCHHHHHHHhh------ccC------------CCC
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHA--CSTAGMVEEGWLCFN------RIR------------SPK 61 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a--~~~~g~~~~a~~l~~------~g~------------~p~ 61 (282)
|++|.. .+.+.......+.++ ..|. ..|-.+..+ +-+.+..++|.+.+. .+- -+|
T Consensus 53 lnAffl-~nld~Me~~l~~l~~---~~~~-s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~d 127 (549)
T PF07079_consen 53 LNAFFL-NNLDLMEKQLMELRQ---QFGK-SAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSD 127 (549)
T ss_pred HHHHHH-hhHHHHHHHHHHHHH---hcCC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhH
Confidence 445543 244555555555554 3343 345555554 336788888888877 122 222
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHhcC-------CCCCHHHHHHHHHHHHhc
Q 043686 62 VTHHALMVSVLARAGLFDEARIFIQEYH-------MERYPEVLRALLEGCRIH 107 (282)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-------~~p~~~~~~~li~~~~~~ 107 (282)
-+-=+..++.+...|.+++++.++++|. +.-|+.+||.++-.+.++
T Consensus 128 f~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 128 FFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 2333566788889999999999998874 446788888866666554
No 307
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=66.72 E-value=80 Score=26.83 Aligned_cols=133 Identities=14% Similarity=0.089 Sum_probs=86.5
Q ss_pred hhcCChHHHHHHHHHhHHhC-CCCCCH------HHHHHHHHHHhcCCCHHHHHHHhh------------ccCCCCh----
Q 043686 6 SLHGQRELGLSLFSELEKKS-SIEIDP------LTFAAVLHACSTAGMVEEGWLCFN------------RIRSPKV---- 62 (282)
Q Consensus 6 ~~~g~~~~A~~lf~~m~~~~-g~~p~~------~ty~~ll~a~~~~g~~~~a~~l~~------------~g~~p~~---- 62 (282)
.+.|+.+.|..+|.+..... ...|+. ..|+.-...+.+..++++|..+++ ....|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 57899999999999987622 344544 346666666666547777777766 2334443
Q ss_pred -hHHHHHHHHHHccCChH---HHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHH
Q 043686 63 -THHALMVSVLARAGLFD---EARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSN 136 (282)
Q Consensus 63 -~~~~~li~~~~~~g~~~---~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~ 136 (282)
.+...|+.+|-..+..+ +|.++++.+. -.|+ ..++--=+..+.+.++.+++.+.+.+|...-+-....+...++
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 45667788888777655 4555665554 2344 5555555667777899999999999998533211256666666
Q ss_pred HH
Q 043686 137 WY 138 (282)
Q Consensus 137 ~y 138 (282)
.+
T Consensus 164 ~i 165 (278)
T PF08631_consen 164 HI 165 (278)
T ss_pred HH
Confidence 55
No 308
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=66.05 E-value=14 Score=28.31 Aligned_cols=55 Identities=13% Similarity=0.046 Sum_probs=44.9
Q ss_pred HhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecCe
Q 043686 105 RIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNK 159 (282)
Q Consensus 105 ~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~ 159 (282)
...++.++++.+++.|.-+.|..+..-..-.-.+...|++++|.+++........
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 4478999999999999999997766666666678899999999988888766553
No 309
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=65.91 E-value=81 Score=26.57 Aligned_cols=143 Identities=12% Similarity=0.052 Sum_probs=85.6
Q ss_pred hhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh-----ccCCCChhHHHHHHHHHHc-----
Q 043686 6 SLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN-----RIRSPKVTHHALMVSVLAR----- 74 (282)
Q Consensus 6 ~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~-----~g~~p~~~~~~~li~~~~~----- 74 (282)
.+.|++++|.+-|+.+.+.....|= .-+--.++-++-+.++.++|....+ .+-.||. -|-.-|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccCC
Confidence 4678888999999888762223232 2344455667778888888888888 4444542 23333333332
Q ss_pred --cCChHHHHHHHHhcC----------CCCCHHH-----------HHH-HHHHHHhcCChhHHHHHHHHHHhcCCCChh-
Q 043686 75 --AGLFDEARIFIQEYH----------MERYPEV-----------LRA-LLEGCRIHVQVKTGKRVIDQLCELKPLSAE- 129 (282)
Q Consensus 75 --~g~~~~A~~l~~~m~----------~~p~~~~-----------~~~-li~~~~~~g~~~~A~~~~~~m~~~~p~~~~- 129 (282)
..+...+.+-|..|+ ..||+.. ++. +..-|.+.|.+..|..-+++|.+--|+...
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~ 203 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAV 203 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccch
Confidence 234444555554443 3344321 222 233478888888888888888866554433
Q ss_pred --HHHHHHHHHHHcCchhhhhc
Q 043686 130 --NYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 130 --~~~~Li~~y~~~g~~~~A~~ 149 (282)
..-.|..+|-..|-.++|..
T Consensus 204 ~eaL~~l~eaY~~lgl~~~a~~ 225 (254)
T COG4105 204 REALARLEEAYYALGLTDEAKK 225 (254)
T ss_pred HHHHHHHHHHHHHhCChHHHHH
Confidence 34456677878887777765
No 310
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=65.72 E-value=33 Score=27.97 Aligned_cols=82 Identities=15% Similarity=0.085 Sum_probs=54.3
Q ss_pred HHHHccCChHHHHHHHHhcC--CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 043686 70 SVLARAGLFDEARIFIQEYH--MERY-----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEA 142 (282)
Q Consensus 70 ~~~~~~g~~~~A~~l~~~m~--~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g 142 (282)
+-+.+.|++++|..-|.+.. |+|. .+.|..=..++.+.+.++.|.+-..+..++.|.......-=..+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 34667888888888887743 2322 3456666667888888888888888888888833222222234677777
Q ss_pred chhhhhccc
Q 043686 143 KWDVVNQAY 151 (282)
Q Consensus 143 ~~~~A~~~~ 151 (282)
.+++|..-+
T Consensus 183 k~eealeDy 191 (271)
T KOG4234|consen 183 KYEEALEDY 191 (271)
T ss_pred hHHHHHHHH
Confidence 788777633
No 311
>PF13934 ELYS: Nuclear pore complex assembly
Probab=64.23 E-value=81 Score=26.01 Aligned_cols=107 Identities=13% Similarity=0.038 Sum_probs=65.6
Q ss_pred CCCCCCHHHHHHHHHHHhc--CCCHHHHHHHhh-ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCCC-CHHHHHHH
Q 043686 25 SSIEIDPLTFAAVLHACST--AGMVEEGWLCFN-RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMER-YPEVLRAL 100 (282)
Q Consensus 25 ~g~~p~~~ty~~ll~a~~~--~g~~~~a~~l~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p-~~~~~~~l 100 (282)
.++.|+ |...+.|+.- .+++++|.+.+- -.+.|+-.. -++..+...|+.+.|.++++.++..+ +...-..+
T Consensus 73 f~ip~~---~~~~~~g~W~LD~~~~~~A~~~L~~ps~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~ 147 (226)
T PF13934_consen 73 FGIPPK---YIKFIQGFWLLDHGDFEEALELLSHPSLIPWFPD--KILQALLRRGDPKLALRYLRAVGPPLSSPEALTLY 147 (226)
T ss_pred hCCCHH---HHHHHHHHHHhChHhHHHHHHHhCCCCCCcccHH--HHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHH
Confidence 456543 6667777664 578888988887 334343222 37777777899999999999886222 23333444
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 043686 101 LEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYA 139 (282)
Q Consensus 101 i~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~ 139 (282)
+.. ..++.+.+|...-+....-. ....+..++..+.
T Consensus 148 ~~~-La~~~v~EAf~~~R~~~~~~--~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 148 FVA-LANGLVTEAFSFQRSYPDEL--RRRLFEQLLEHCL 183 (226)
T ss_pred HHH-HHcCCHHHHHHHHHhCchhh--hHHHHHHHHHHHH
Confidence 444 45578888887766544211 1245666665555
No 312
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.53 E-value=98 Score=26.73 Aligned_cols=140 Identities=11% Similarity=-0.023 Sum_probs=94.5
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh-ccCCCC---hhHHHHHHHHHHccCCh
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN-RIRSPK---VTHHALMVSVLARAGLF 78 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~-~g~~p~---~~~~~~li~~~~~~g~~ 78 (282)
.....|+..+|..+|+.... . .|+ ...--.+..++...|+++.|..++. ....-. .....+-|..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~-~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ-A--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHH-h--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 45678999999999999876 2 232 3455667778999999999999999 222111 22223456666666666
Q ss_pred HHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCChhHHHHHHHHHHHcCchhh
Q 043686 79 DEARIFIQEYHMER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCEL--KPLSAENYIMLSNWYAAEAKWDV 146 (282)
Q Consensus 79 ~~A~~l~~~m~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~p~~~~~~~~Li~~y~~~g~~~~ 146 (282)
.+..++-.+.--.| |...=-.|-..|...|+.++|.+.+-.+... .-.+...-..|++.+.-.|.-|.
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 66666555544367 5777777888899999999998887776632 22233666677777766664443
No 313
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=63.40 E-value=9.2 Score=24.45 Aligned_cols=44 Identities=14% Similarity=0.071 Sum_probs=27.4
Q ss_pred hHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 78 FDEARIFIQEYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 78 ~~~A~~l~~~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
++...++++.+. .+-|-.-.=.+|.||...|++++|.++.+++.
T Consensus 6 ~~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 6 LEELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444443 22333344457888999999999998888876
No 314
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=62.88 E-value=20 Score=21.56 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=29.8
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHA 40 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a 40 (282)
..-+.|.+.++..++++|++ .|+.-+...|..++.-
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~-~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQ-AGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHcCChhhHHHHHHHHHH-cCcccCHHHHHHHHHH
Confidence 34578888999999999988 9998888888887753
No 315
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=62.22 E-value=55 Score=28.13 Aligned_cols=113 Identities=12% Similarity=0.100 Sum_probs=85.5
Q ss_pred hcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhc-CC-CHHHHHHHhh-----ccCCCChhHHHHHHHHHHccCChH
Q 043686 7 LHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACST-AG-MVEEGWLCFN-----RIRSPKVTHHALMVSVLARAGLFD 79 (282)
Q Consensus 7 ~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~-~g-~~~~a~~l~~-----~g~~p~~~~~~~li~~~~~~g~~~ 79 (282)
++..+.+|+++|+....++.+.-|..+-.-+++.... .+ ....-.++.+ .|-.++..+..++|..+++.+++.
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 3455678999999654313477888888888887766 22 2322333333 667888889999999999999999
Q ss_pred HHHHHHHhcC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043686 80 EARIFIQEYH----MERYPEVLRALLEGCRIHVQVKTGKRVIDQ 119 (282)
Q Consensus 80 ~A~~l~~~m~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 119 (282)
+-.++++.-. ..-|...|...|..-...|+.+-...+..+
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 9999998743 234788999999999999999877777664
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=61.69 E-value=45 Score=34.22 Aligned_cols=116 Identities=11% Similarity=0.076 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHhc----CCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHH--HHHHH
Q 043686 28 EIDPLTFAAVLHACST----AGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEV--LRALL 101 (282)
Q Consensus 28 ~p~~~ty~~ll~a~~~----~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~--~~~li 101 (282)
+|+...+..+..+|++ ..+.++|--.|+....- .--+.+|-.+|++.+|..+-.++....|... --.|+
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-----ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~ 1006 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL-----EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELV 1006 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-----HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 3555555555544432 34455555554411100 1124556666666666666666653334322 25577
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceee
Q 043686 102 EGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIE 155 (282)
Q Consensus 102 ~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~ 155 (282)
+-+...++.-+|-++..+-.+ ...-.+..||++..+++|.++...-.
T Consensus 1007 s~L~e~~kh~eAa~il~e~~s-------d~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1007 SRLVEQRKHYEAAKILLEYLS-------DPEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHcccchhHHHHHHHHhc-------CHHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 777777777777777665532 12234456777778888888554443
No 317
>PRK10941 hypothetical protein; Provisional
Probab=61.35 E-value=48 Score=28.21 Aligned_cols=55 Identities=16% Similarity=0.059 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 95 EVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 95 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
...+.|-.+|.+.++++.|+++.+.+..+.|+++.-+-----.|.+.|.+..|..
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~ 236 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALS 236 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 4567788889999999999999999999999876555555556888888888876
No 318
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=60.36 E-value=34 Score=27.25 Aligned_cols=50 Identities=18% Similarity=0.011 Sum_probs=39.1
Q ss_pred cCCCHHHHHHHhh-----ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC
Q 043686 43 TAGMVEEGWLCFN-----RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH-MER 92 (282)
Q Consensus 43 ~~g~~~~a~~l~~-----~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p 92 (282)
...+.+......+ ....|+..+|..++..+...|+.++|.++..++. .-|
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4455444443333 6778999999999999999999999999999987 455
No 319
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=60.11 E-value=1.1e+02 Score=26.36 Aligned_cols=119 Identities=10% Similarity=0.080 Sum_probs=69.8
Q ss_pred HHHHHHHhh------ccCCCC-hhHHHHHHHHHHc--cCChHHHHHHHHhcC---CCCCHHHHHH--HHHHHHhcC----
Q 043686 47 VEEGWLCFN------RIRSPK-VTHHALMVSVLAR--AGLFDEARIFIQEYH---MERYPEVLRA--LLEGCRIHV---- 108 (282)
Q Consensus 47 ~~~a~~l~~------~g~~p~-~~~~~~li~~~~~--~g~~~~A~~l~~~m~---~~p~~~~~~~--li~~~~~~g---- 108 (282)
+++.....+ ..++.+ ..++.+++..-.. -..+++..++++.|. +..+..+|-+ +|.......
T Consensus 38 ~~~~~~~IK~~t~~fS~lr~~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~ 117 (297)
T PF13170_consen 38 FKEISKYIKKNTGWFSPLRGNHRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDE 117 (297)
T ss_pred HHHHHHHHHHcccccccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHH
Confidence 455555555 445544 5566666666544 112444455556664 5556555544 333332222
Q ss_pred ChhHHHHHHHHHHhcCC-----CChhHHHHHHHHHHHcCchhhhhcccceeeecCeEEEEecCCCCCCChHHHHHHHHHH
Q 043686 109 QVKTGKRVIDQLCELKP-----LSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSL 183 (282)
Q Consensus 109 ~~~~A~~~~~~m~~~~p-----~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~l 183 (282)
...+|..+|+.|++-.| +| .++.+|+.+ .....++..+.++..
T Consensus 118 ~~~ra~~iy~~mKk~H~fLTs~~D-~~~a~lLA~-------------------------------~~~~~e~l~~~~E~~ 165 (297)
T PF13170_consen 118 IIQRAKEIYKEMKKKHPFLTSPED-YPFAALLAM-------------------------------TSEDVEELAERMEQC 165 (297)
T ss_pred HHHHHHHHHHHHHHhCccccCccc-hhHHHHHhc-------------------------------ccccHHHHHHHHHHH
Confidence 35689999999997554 34 455555432 223355666778899
Q ss_pred HHHHHhCCCccCCC
Q 043686 184 MKKMEGDSLRPKPD 197 (282)
Q Consensus 184 ~~~M~~~g~~pd~~ 197 (282)
++.+.+.|+.+...
T Consensus 166 Y~~L~~~~f~kgn~ 179 (297)
T PF13170_consen 166 YQKLADAGFKKGND 179 (297)
T ss_pred HHHHHHhCCCCCcH
Confidence 99999999988764
No 320
>PRK10941 hypothetical protein; Provisional
Probab=57.34 E-value=49 Score=28.15 Aligned_cols=67 Identities=9% Similarity=-0.095 Sum_probs=50.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhH
Q 043686 64 HHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAEN 130 (282)
Q Consensus 64 ~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~ 130 (282)
..+.|-.+|-+.++++.|.++.+.+- +.|+ ..-+-----.|.+.|.+..|..=++...+..|+++.+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 34566677888899999999988865 6666 4445544555888899999988888888888866544
No 321
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=54.22 E-value=1.9e+02 Score=28.40 Aligned_cols=94 Identities=12% Similarity=0.049 Sum_probs=58.3
Q ss_pred ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH--hcCCCCh-----
Q 043686 56 RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLC--ELKPLSA----- 128 (282)
Q Consensus 56 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~p~~~----- 128 (282)
..++-|....-.|-+++.+.|.-++|.+.|-+-. .|.. -+.+|....+|.+|.++-+..+ ++..--.
T Consensus 846 ~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s-~pka-----Av~tCv~LnQW~~avelaq~~~l~qv~tliak~aaq 919 (1189)
T KOG2041|consen 846 RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS-LPKA-----AVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQ 919 (1189)
T ss_pred HhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc-CcHH-----HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 4455566777788888888888888888887766 5542 3456777778888887766543 1111000
Q ss_pred ----hHHHHHHHHHHHcCchhhhhcccceee
Q 043686 129 ----ENYIMLSNWYAAEAKWDVVNQAYSWIE 155 (282)
Q Consensus 129 ----~~~~~Li~~y~~~g~~~~A~~~~~~~~ 155 (282)
.-.---|..+-++|+.-+|.++.+.|-
T Consensus 920 ll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 920 LLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 011124556777777666666555543
No 322
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=53.20 E-value=33 Score=21.17 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=24.7
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHA 40 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a 40 (282)
-|+.+.|++++|.+..+.+.+ +.|+-.-...|-..
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~---~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLE---IEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH---HTTS-HHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh---hCCCcHHHHHHHHH
Confidence 367888888999988888887 77887666555443
No 323
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=52.84 E-value=58 Score=31.50 Aligned_cols=69 Identities=13% Similarity=0.188 Sum_probs=46.6
Q ss_pred HHHHHHhcCCCHHHHHHHhh------ccCCCChhHHHHHHHHHHccCChH------HHHHHHHhcCCCCCHHHHHHHHHH
Q 043686 36 AVLHACSTAGMVEEGWLCFN------RIRSPKVTHHALMVSVLARAGLFD------EARIFIQEYHMERYPEVLRALLEG 103 (282)
Q Consensus 36 ~ll~a~~~~g~~~~a~~l~~------~g~~p~~~~~~~li~~~~~~g~~~------~A~~l~~~m~~~p~~~~~~~li~~ 103 (282)
+|+.||...|++..+.++++ .|-+-=...||--|.-+.+.|.++ .|.++++...+.-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 78889999999988888888 222222345666677777777654 455566555456677777777665
Q ss_pred H
Q 043686 104 C 104 (282)
Q Consensus 104 ~ 104 (282)
-
T Consensus 113 s 113 (1117)
T COG5108 113 S 113 (1117)
T ss_pred h
Confidence 4
No 324
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=52.33 E-value=44 Score=28.87 Aligned_cols=107 Identities=10% Similarity=0.031 Sum_probs=61.3
Q ss_pred hHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCC---C--hhHHHHHHHHHHccCChHHHHHHH
Q 043686 11 RELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSP---K--VTHHALMVSVLARAGLFDEARIFI 85 (282)
Q Consensus 11 ~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p---~--~~~~~~li~~~~~~g~~~~A~~l~ 85 (282)
+.+-+...++..+ ..-+...+.-++.-| +.+.+.++.-.|..+-+- + ..+.+-.-..|-.+|.+.+|.++-
T Consensus 227 v~e~es~~rqi~~---inltide~kelv~~y-kgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~ 302 (361)
T COG3947 227 VQEYESLARQIEA---INLTIDELKELVGQY-KGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLH 302 (361)
T ss_pred HHHHHHHhhhhhc---cccCHHHHHHHHHHh-cCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 4444555555544 224444555565544 223344443333311100 0 123334446677888888888888
Q ss_pred HhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 86 QEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 86 ~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
+... ..| +...|-.|+..+...|+--.|.+-++.+.
T Consensus 303 qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 303 QRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 8755 444 56778888888888888766776666664
No 325
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.82 E-value=78 Score=26.52 Aligned_cols=24 Identities=8% Similarity=-0.053 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 043686 97 LRALLEGCRIHVQVKTGKRVIDQL 120 (282)
Q Consensus 97 ~~~li~~~~~~g~~~~A~~~~~~m 120 (282)
...-|.-|...|++..|-+...++
T Consensus 96 L~~aieIyt~~Grf~~aAk~~~~i 119 (288)
T KOG1586|consen 96 LEKAIEIYTDMGRFTMAAKHHIEI 119 (288)
T ss_pred HHHHHHHHHhhhHHHHHHhhhhhH
Confidence 333444455555555444443333
No 326
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=51.36 E-value=74 Score=24.02 Aligned_cols=27 Identities=11% Similarity=0.135 Sum_probs=22.6
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhCCCccCC
Q 043686 166 GDVSCPRSEGIFWELQSLMKKMEGDSLRPKP 196 (282)
Q Consensus 166 ~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~ 196 (282)
..-+.|...+++ .+|..|.++|-.||.
T Consensus 104 tlR~ygsk~DaY----~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 104 TLRAYGSKTDAY----AVFRKMLERGNPPDD 130 (140)
T ss_pred chhhhccCCcHH----HHHHHHHhCCCCCcc
Confidence 345567778899 999999999999986
No 327
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=51.01 E-value=21 Score=21.06 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=18.1
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCC
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSS 26 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g 26 (282)
.+|...|+.+.|.+++++... .|
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl~-~~ 29 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVIE-EG 29 (44)
T ss_pred HHHHHcCChHHHHHHHHHHHH-cC
Confidence 578888888888888888776 44
No 328
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=50.95 E-value=1.1e+02 Score=27.07 Aligned_cols=83 Identities=16% Similarity=0.164 Sum_probs=56.5
Q ss_pred HHHHHHHccCChHHHHHHHHhcC------CCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHh-------cCCCChhHH
Q 043686 67 LMVSVLARAGLFDEARIFIQEYH------MERYPEVL--RALLEGCRIHVQVKTGKRVIDQLCE-------LKPLSAENY 131 (282)
Q Consensus 67 ~li~~~~~~g~~~~A~~l~~~m~------~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~-------~~p~~~~~~ 131 (282)
.++...-+.++.++|.+.++++. -.|+.+.| +.+...+-..|+..++.+.+++.+. +.|.-...|
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 45555666779999999999875 46786665 5566678888999999999988773 233122345
Q ss_pred HHHH-HHHHHcCchhhhhc
Q 043686 132 IMLS-NWYAAEAKWDVVNQ 149 (282)
Q Consensus 132 ~~Li-~~y~~~g~~~~A~~ 149 (282)
..+- ..|-+.|++....+
T Consensus 160 Y~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred HHHHHHHHHHHHhHHHHHH
Confidence 5554 44555577776665
No 329
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.64 E-value=14 Score=23.66 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=18.6
Q ss_pred ChhhhhhcCChHHHHHHHHHhHH
Q 043686 1 MILGYSLHGQRELGLSLFSELEK 23 (282)
Q Consensus 1 li~~~~~~g~~~~A~~lf~~m~~ 23 (282)
+|.||.+.|++++|.+...++..
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 37889999999999998888765
No 330
>PF06368 Met_asp_mut_E: Methylaspartate mutase E chain (MutE); InterPro: IPR006396 Glutamate mutase (methylaspartate mutase) catalyses the reversible interconversion of L-glutamate and L-threo-3-methylaspartate, the first step in the pathway of glutamate fermentation []. Catalysis is initiated using the cobalamin cofactor. The E subunit is the catalytic subunit (MutE) []. ; GO: 0016866 intramolecular transferase activity, 0031419 cobalamin binding, 0019670 anaerobic glutamate catabolic process; PDB: 1CB7_D 1I9C_B 1CCW_D.
Probab=49.94 E-value=89 Score=28.47 Aligned_cols=73 Identities=10% Similarity=-0.128 Sum_probs=34.3
Q ss_pred CCCCCCChHHHH---HHHHHHHHHHHhCCCccCCCcccccchhhhhhhhhh---hhH-HHHHHhhhccCCCCCeEEEeec
Q 043686 166 GDVSCPRSEGIF---WELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIG---HSE-ILALSFGLISTQVGATIHVTKN 238 (282)
Q Consensus 166 ~~~~~~~~~~a~---~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~~~---~~~-~l~~~~~~~~~~~~~~~~~~~~ 238 (282)
-|++.--.++++ ....+|+-.-.+.|+.||.-+|--+....+-..... -.| .++..+|+- .|.=+
T Consensus 139 PY~k~vpLe~si~~Wqy~drl~g~y~e~Gv~inrE~FGpLtgtLvPPsisiav~ilE~Lla~eqGVk--------siSv~ 210 (441)
T PF06368_consen 139 PYSKNVPLEKSIRDWQYVDRLCGYYEENGVEINREPFGPLTGTLVPPSISIAVSILEALLAAEQGVK--------SISVG 210 (441)
T ss_dssp TT-SS--HHHHHHHHHHHHHHHHHHHHTT---EEE--TTTTSSS--HHHHHHHHHHHHHHHHHTT----------EEEEE
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCcCccCcHHHHHHHHHHHHHHHHcCCe--------EEEec
Confidence 355544455544 444678888889999999988876555444433321 111 234445554 46778
Q ss_pred cccccchH
Q 043686 239 LRMRHICH 246 (282)
Q Consensus 239 ~~~~g~~~ 246 (282)
|..||++.
T Consensus 211 Y~Q~gn~~ 218 (441)
T PF06368_consen 211 YAQQGNLI 218 (441)
T ss_dssp EE--S-HH
T ss_pred ccccCChH
Confidence 99999874
No 331
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.88 E-value=1.6e+02 Score=24.95 Aligned_cols=83 Identities=12% Similarity=0.033 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCCHHHHHHHhh--------ccCCCCh-hHHHHHHHHHHccCChHHHHHHHHh---cC--CCC-CHHHHHH
Q 043686 35 AAVLHACSTAGMVEEGWLCFN--------RIRSPKV-THHALMVSVLARAGLFDEARIFIQE---YH--MER-YPEVLRA 99 (282)
Q Consensus 35 ~~ll~a~~~~g~~~~a~~l~~--------~g~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~---m~--~~p-~~~~~~~ 99 (282)
..+-..+.+..++++|-..|. ..-.|+. ..|-+.|-.|--..++-.|++.++. .+ ..| |..+...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 334444555555555555444 1112221 2355556666667799999999988 44 334 4788999
Q ss_pred HHHHHHhcCChhHHHHHHH
Q 043686 100 LLEGCRIHVQVKTGKRVID 118 (282)
Q Consensus 100 li~~~~~~g~~~~A~~~~~ 118 (282)
||.+|- .|+.|++..+..
T Consensus 234 LL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 234 LLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred HHHHhc-cCCHHHHHHHHc
Confidence 999985 467777776643
No 332
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=49.21 E-value=52 Score=27.26 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=38.2
Q ss_pred CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHH--HHHcCchhhhhc
Q 043686 90 MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNW--YAAEAKWDVVNQ 149 (282)
Q Consensus 90 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~--y~~~g~~~~A~~ 149 (282)
+.|+ ..+||-|---+...|+++.|.+.|+...+++|.. -|..+-++ +--.|++.-|.+
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y--~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--NYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc--hHHHhccceeeeecCchHhhHH
Confidence 5777 5678888777888888888888888888888843 34333222 112455555544
No 333
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=49.04 E-value=77 Score=32.67 Aligned_cols=98 Identities=15% Similarity=0.127 Sum_probs=55.9
Q ss_pred hcCCCHHHHHHHhhccCCCChhHHHHH----HHHHHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043686 42 STAGMVEEGWLCFNRIRSPKVTHHALM----VSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVI 117 (282)
Q Consensus 42 ~~~g~~~~a~~l~~~g~~p~~~~~~~l----i~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 117 (282)
-+.|.+.+|..++. ||...+.-. -+-+.....+++|--.|+.-. -----+.+|-..|+|.+|+.+-
T Consensus 919 ~kh~Ly~~aL~ly~----~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~G------klekAl~a~~~~~dWr~~l~~a 988 (1265)
T KOG1920|consen 919 KKHGLYDEALALYK----PDSEKQKVIYEAYADHLREELMSDEAALMYERCG------KLEKALKAYKECGDWREALSLA 988 (1265)
T ss_pred Hhcccchhhhheec----cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhc------cHHHHHHHHHHhccHHHHHHHH
Confidence 34455555555554 555544444 444455677777777766643 1112466777788888888887
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 118 DQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 118 ~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
.++..-.-.-..+--.|+.-+...++.-+|-+
T Consensus 989 ~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~ 1020 (1265)
T KOG1920|consen 989 AQLSEGKDELVILAEELVSRLVEQRKHYEAAK 1020 (1265)
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHcccchhHHH
Confidence 76641110011223566677777777666655
No 334
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=48.86 E-value=43 Score=29.88 Aligned_cols=113 Identities=10% Similarity=0.100 Sum_probs=76.7
Q ss_pred HHHHHhcCCCHHHHHHHhh-------ccCCC--ChhHHHHHHHHHHccCChHHHHHHHHhcC-----C-CCCHH-HH---
Q 043686 37 VLHACSTAGMVEEGWLCFN-------RIRSP--KVTHHALMVSVLARAGLFDEARIFIQEYH-----M-ERYPE-VL--- 97 (282)
Q Consensus 37 ll~a~~~~g~~~~a~~l~~-------~g~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~-----~-~p~~~-~~--- 97 (282)
+-.|..-.+.++++.+-|+ ..-.| ...+|.+|-..|++..+.++|.-+..+.- + ..|+. -|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4445555667888888888 22222 35689999999999999998776554421 1 12321 22
Q ss_pred --HHHHHHHHhcCChhHHHHHHHHHHh--c----CCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 98 --RALLEGCRIHVQVKTGKRVIDQLCE--L----KPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 98 --~~li~~~~~~g~~~~A~~~~~~m~~--~----~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
-.|--++-..|+.-.|.+.-++..+ + .|..+...-.+.+.|-..|++|.|+.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~ 267 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFR 267 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHH
Confidence 2344568888999999999998663 2 23333444578899999999999887
No 335
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=48.77 E-value=56 Score=30.33 Aligned_cols=114 Identities=11% Similarity=0.067 Sum_probs=76.2
Q ss_pred cCChHHH-HHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--cc-CCCChhHHHHHHHHHHccCChHHHHH
Q 043686 8 HGQRELG-LSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RI-RSPKVTHHALMVSVLARAGLFDEARI 83 (282)
Q Consensus 8 ~g~~~~A-~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g-~~p~~~~~~~li~~~~~~g~~~~A~~ 83 (282)
.|++..| .++|.-+++ ..-.|+.+-.-+.| ....|+++.+...+. .| +.....+--+++....+.|++++|..
T Consensus 302 ~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAALRN-QQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHHHh-CCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 4555444 456666666 65668877776666 567789999988887 33 33456678888999999999999998
Q ss_pred HHHhcC---C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 043686 84 FIQEYH---M-ERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPL 126 (282)
Q Consensus 84 l~~~m~---~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~ 126 (282)
+-..|- + .|.+++-. .-.--..|-++++.-.+++...+.|+
T Consensus 379 ~a~~~l~~eie~~ei~~ia--a~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVA--AGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHhccccCChhheeee--cccHHHHhHHHHHHHHHHHHhccCCh
Confidence 887764 2 23332211 11223446788888888888766654
No 336
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=48.47 E-value=1.9e+02 Score=27.10 Aligned_cols=82 Identities=7% Similarity=0.057 Sum_probs=60.3
Q ss_pred ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHH-HHHHhcCChhHHHHHHHHHHhcCCCChhHHH
Q 043686 56 RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALL-EGCRIHVQVKTGKRVIDQLCELKPLSAENYI 132 (282)
Q Consensus 56 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ 132 (282)
..+.-|+..|...|.-.-+.+...+...+|.+|- ..|| +..|-.-- --|-.+-+++.|..+|-.-.+.+|+++..|.
T Consensus 99 ~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 99 NRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred HhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 5566688899999888777788999999999985 4554 34442222 2355566699999999999999999888777
Q ss_pred HHHHH
Q 043686 133 MLSNW 137 (282)
Q Consensus 133 ~Li~~ 137 (282)
...++
T Consensus 179 eyfrm 183 (568)
T KOG2396|consen 179 EYFRM 183 (568)
T ss_pred HHHHH
Confidence 54444
No 337
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.16 E-value=30 Score=32.82 Aligned_cols=126 Identities=13% Similarity=-0.010 Sum_probs=72.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhH
Q 043686 33 TFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKT 112 (282)
Q Consensus 33 ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~ 112 (282)
.-+.+..-+-+.|..++|.++- ||... -....-+.|+++.|.++..+.. +..-|..|-.+..+.|++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s-----~D~d~---rFelal~lgrl~iA~~la~e~~---s~~Kw~~Lg~~al~~~~l~l 684 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS-----TDPDQ---RFELALKLGRLDIAFDLAVEAN---SEVKWRQLGDAALSAGELPL 684 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC-----CChhh---hhhhhhhcCcHHHHHHHHHhhc---chHHHHHHHHHHhhcccchh
Confidence 3455566666777777776543 23211 1223346688888888776644 56678888888888888888
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecCeEEEEecCCCCCCChHHHH
Q 043686 113 GKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIF 177 (282)
Q Consensus 113 A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~ 177 (282)
|.+.|.... -|..|+-.|...|+-+.-..+-+.-...+..|.-..++-..|+.+++.
T Consensus 685 A~EC~~~a~--------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 685 ASECFLRAR--------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECL 741 (794)
T ss_pred HHHHHHhhc--------chhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHH
Confidence 888888663 344444444444443322221122222222333333455667777766
No 338
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=47.59 E-value=1.2e+02 Score=29.12 Aligned_cols=96 Identities=14% Similarity=0.076 Sum_probs=68.8
Q ss_pred CCCHHHHHHHhh--ccCCC--ChhHHHHHHHHHHccCChHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043686 44 AGMVEEGWLCFN--RIRSP--KVTHHALMVSVLARAGLFDEARIFIQEYH-M-ERYPEVLRALLEGCRIHVQVKTGKRVI 117 (282)
Q Consensus 44 ~g~~~~a~~l~~--~g~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~-~p~~~~~~~li~~~~~~g~~~~A~~~~ 117 (282)
.|+...|...+. ....| ..+..-.|.+..-+.|.+.+|..++.+-- + .....++-++-.+|.-..++++|.+.|
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 466666666665 33333 23344456666677788889999887733 2 222456777888888889999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHH
Q 043686 118 DQLCELKPLSAENYIMLSNWYA 139 (282)
Q Consensus 118 ~~m~~~~p~~~~~~~~Li~~y~ 139 (282)
++.....|++++.-+.|...-|
T Consensus 700 ~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 700 RQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHhcCCCChhhHHHHHHHHH
Confidence 9999999988888888877666
No 339
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=46.87 E-value=1.1e+02 Score=26.22 Aligned_cols=79 Identities=8% Similarity=-0.015 Sum_probs=49.6
Q ss_pred HHHHHhcCCCHHHHHHHhh------ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCCC---CHHHHHHHHHHHHh-
Q 043686 37 VLHACSTAGMVEEGWLCFN------RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMER---YPEVLRALLEGCRI- 106 (282)
Q Consensus 37 ll~a~~~~g~~~~a~~l~~------~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p---~~~~~~~li~~~~~- 106 (282)
=|.|++..++..++..+.- ..++|.+. ---|-.|.|.|....+.++-...--.| +...|.++..-|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 4567777777777665544 45555433 334556778888887777776632123 24557777666554
Q ss_pred ----cCChhHHHHHH
Q 043686 107 ----HVQVKTGKRVI 117 (282)
Q Consensus 107 ----~g~~~~A~~~~ 117 (282)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 48888888776
No 340
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=46.46 E-value=94 Score=23.30 Aligned_cols=48 Identities=10% Similarity=0.013 Sum_probs=34.6
Q ss_pred ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC--CCCCHHHHHHHHHH
Q 043686 56 RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH--MERYPEVLRALLEG 103 (282)
Q Consensus 56 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~--~~p~~~~~~~li~~ 103 (282)
..+.|+..+..+-+.++.+.+++..|.++|+..+ +.+--..|-.++.-
T Consensus 78 yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v~e 127 (149)
T KOG4077|consen 78 YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYVKE 127 (149)
T ss_pred cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 7788888888888888888888888888888776 33333356555543
No 341
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=46.25 E-value=75 Score=26.52 Aligned_cols=70 Identities=9% Similarity=-0.054 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHhc------CCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 79 DEARIFIQEYHMERYPEV--LRALLEGCRIHVQVKTGKRVIDQLCEL------KPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 79 ~~A~~l~~~m~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~------~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
+.|.+.|.... .+-... ---|-.-|.+.|++++|.++|+.+... .+....+...|..++.+.|+.++...
T Consensus 162 ~~A~~~f~~~~-~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 162 EKAYEQFKKYG-QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHHhc-cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666666655 222222 223445577788888888888877521 11122445566666667777665543
No 342
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=45.99 E-value=1.2e+02 Score=27.98 Aligned_cols=75 Identities=11% Similarity=-0.002 Sum_probs=53.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 043686 65 HALMVSVLARAGLFDEARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEA 142 (282)
Q Consensus 65 ~~~li~~~~~~g~~~~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g 142 (282)
...|+.-|--.|++.+|.+.++++. +-.-.+++-+++.+.-+.|+-..-..++++..+- ..+|-+-+-++|.+..
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s---glIT~nQMtkGf~RV~ 588 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS---GLITTNQMTKGFERVY 588 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---CceeHHHhhhhhhhhh
Confidence 3467778888999999999999844 3334788999999999988877555555544432 3377777878876654
No 343
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=45.54 E-value=1.4e+02 Score=24.18 Aligned_cols=17 Identities=6% Similarity=0.024 Sum_probs=10.9
Q ss_pred HhcCChhHHHHHHHHHH
Q 043686 105 RIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 105 ~~~g~~~~A~~~~~~m~ 121 (282)
.+.|++++|.+.++-|.
T Consensus 132 l~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 132 LRKGSFEEAERFLKFME 148 (204)
T ss_pred HHhccHHHHHHHHHHHH
Confidence 34566666666666665
No 344
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=45.33 E-value=29 Score=19.00 Aligned_cols=24 Identities=4% Similarity=0.122 Sum_probs=17.7
Q ss_pred ChHHHHHHHHHhHHhCCCCCCHHHHHH
Q 043686 10 QRELGLSLFSELEKKSSIEIDPLTFAA 36 (282)
Q Consensus 10 ~~~~A~~lf~~m~~~~g~~p~~~ty~~ 36 (282)
.+++|..+|++... +.|++.+|..
T Consensus 2 E~dRAR~IyeR~v~---~hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVL---VHPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHH---hCCCchHHHH
Confidence 46788888888877 5687777654
No 345
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=45.06 E-value=1.7e+02 Score=25.78 Aligned_cols=110 Identities=15% Similarity=0.084 Sum_probs=65.8
Q ss_pred hhhcCChHHHHHHHHHhHHh---CCCCCCHHHHHHHHHHHhc-----CCCHHHHHHHhhccCCCC----hhHHHHHHHHH
Q 043686 5 YSLHGQRELGLSLFSELEKK---SSIEIDPLTFAAVLHACST-----AGMVEEGWLCFNRIRSPK----VTHHALMVSVL 72 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~---~g~~p~~~ty~~ll~a~~~-----~g~~~~a~~l~~~g~~p~----~~~~~~li~~~ 72 (282)
||+.|+.+.|++.+++.-+. -|.+.|++-+..=+.-+-. ...++.|..+++.|..-+ ..+|-.|-..-
T Consensus 114 ycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~ms 193 (393)
T KOG0687|consen 114 YCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMS 193 (393)
T ss_pred HHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHH
Confidence 78999999999888875431 4777887766554443222 234778888888554433 34555554443
Q ss_pred HccCChHHHHHHHHh-cC------C--CCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043686 73 ARAGLFDEARIFIQE-YH------M--ERYPEVLRALLEGCRIHVQVKTGKRVI 117 (282)
Q Consensus 73 ~~~g~~~~A~~l~~~-m~------~--~p~~~~~~~li~~~~~~g~~~~A~~~~ 117 (282)
. .++.+|-.+|-+ ++ + -++.+.|+ ++.+.....+.+--.++.
T Consensus 194 v--R~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Yt-v~~g~i~leR~dlktKVi 244 (393)
T KOG0687|consen 194 V--RNFKEAADLFLDSVSTFTSYELMSYETFVRYT-VITGLIALERVDLKTKVI 244 (393)
T ss_pred H--HhHHHHHHHHHHHcccccceecccHHHHHHHH-HHHhhheeccchHHhhhc
Confidence 3 478888888866 33 1 23455555 455555555555433333
No 346
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.41 E-value=3.3e+02 Score=27.02 Aligned_cols=141 Identities=14% Similarity=0.031 Sum_probs=85.7
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCC---CHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCCh
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEI---DPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLF 78 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p---~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~ 78 (282)
|..+.+.+.+++|++.-+.- .|..| -.......|+.+.-.|+.++|-.+--.-..-+..-|--.+.-+...++.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~---~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKAS---IGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhc---cCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccccc
Confidence 56678889999999888774 34555 3456778888888888888887766533333455666666666666665
Q ss_pred HHHHHHHHhcC-CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHH---H--------hcCCC------ChhHHHHHHHHH
Q 043686 79 DEARIFIQEYH-MER--YPEVLRALLEGCRIHVQVKTGKRVIDQL---C--------ELKPL------SAENYIMLSNWY 138 (282)
Q Consensus 79 ~~A~~l~~~m~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m---~--------~~~p~------~~~~~~~Li~~y 138 (282)
.+...+ +| ..| +...|..+|-.|.. .+...=.++.++- . ...|. +...--.|...|
T Consensus 440 ~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LY 515 (846)
T KOG2066|consen 440 TDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLY 515 (846)
T ss_pred chhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHH
Confidence 544333 44 222 35577777777766 2322222222211 0 11110 112233589999
Q ss_pred HHcCchhhhhc
Q 043686 139 AAEAKWDVVNQ 149 (282)
Q Consensus 139 ~~~g~~~~A~~ 149 (282)
...+++.+|.+
T Consensus 516 l~d~~Y~~Al~ 526 (846)
T KOG2066|consen 516 LYDNKYEKALP 526 (846)
T ss_pred HHccChHHHHH
Confidence 99999999988
No 347
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=43.96 E-value=1.1e+02 Score=28.58 Aligned_cols=60 Identities=8% Similarity=0.161 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCc-hhhhhc
Q 043686 90 MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAK-WDVVNQ 149 (282)
Q Consensus 90 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~-~~~A~~ 149 (282)
+.-|+..|..-|.-+-+.+...+...+|.+|...+|+++..|..-.......+. ++.|..
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRa 161 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARA 161 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHH
Confidence 556999999999988888889999999999999999999999866555544444 555544
No 348
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=42.92 E-value=1.4e+02 Score=25.77 Aligned_cols=81 Identities=11% Similarity=0.097 Sum_probs=53.3
Q ss_pred HHHHHHccCChHHHHHHHHh-cC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--hhHHHHHHHHHH-
Q 043686 68 MVSVLARAGLFDEARIFIQE-YH----MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS--AENYIMLSNWYA- 139 (282)
Q Consensus 68 li~~~~~~g~~~~A~~l~~~-m~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~--~~~~~~Li~~y~- 139 (282)
=|.+++..+++.++....-+ .+ +.|.+.-.. |--|.|.+....+.++-..-.. +|+| ..-|.++...|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~-~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQ-DPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHh-CcccCCchhhHHHHHHHHH
Confidence 37889999999998876543 22 445543333 4458889988888887776553 2222 234776665554
Q ss_pred ----HcCchhhhhccc
Q 043686 140 ----AEAKWDVVNQAY 151 (282)
Q Consensus 140 ----~~g~~~~A~~~~ 151 (282)
-.|.+++|++..
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 569999999844
No 349
>PRK11619 lytic murein transglycosylase; Provisional
Probab=42.14 E-value=3.4e+02 Score=26.46 Aligned_cols=139 Identities=11% Similarity=-0.042 Sum_probs=87.8
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-ccCCCC-hhHHHHHHHHHHccCChHHHH
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-RIRSPK-VTHHALMVSVLARAGLFDEAR 82 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-~g~~p~-~~~~~~li~~~~~~g~~~~A~ 82 (282)
..+.|++.++.++-.++.. ..+ ..-..|-.+...+.. ...++....+. ..-.|- ...=...+..+.+.+++.+..
T Consensus 43 a~~~g~~~~~~~~~~~l~d-~pL-~~yl~y~~L~~~l~~-~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~ 119 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKD-YPL-YPYLEYRQLTQDLMN-QPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLL 119 (644)
T ss_pred HHHCCCHHHHHHHHHhccC-CCc-HhHHHHHHHHhcccc-CCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHH
Confidence 4567888888888888764 333 344566666554442 24566666666 333332 333345566677888888888
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhh
Q 043686 83 IFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVN 148 (282)
Q Consensus 83 ~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~ 148 (282)
+ |..-+ ..+...-.....+....|+.++|....+.+--.....+...+.|++.+.+.|.+....
T Consensus 120 ~-~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d 183 (644)
T PRK11619 120 A-FSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLA 183 (644)
T ss_pred H-hcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHH
Confidence 7 33222 3455566777788888899888877777766322223377888888888777765543
No 350
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=41.70 E-value=2.2e+02 Score=25.43 Aligned_cols=43 Identities=14% Similarity=0.174 Sum_probs=34.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHcC
Q 043686 100 LLEGCRIHVQVKTGKRVIDQLCELKPL-SAENYIMLSNWYAAEA 142 (282)
Q Consensus 100 li~~~~~~g~~~~A~~~~~~m~~~~p~-~~~~~~~Li~~y~~~g 142 (282)
-|....+.|.+..|.+..+-+..++|. |+..--.+|+.|+-..
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs 152 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRS 152 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhc
Confidence 366789999999999999999999998 7666667777776443
No 351
>PF13934 ELYS: Nuclear pore complex assembly
Probab=41.64 E-value=2e+02 Score=23.70 Aligned_cols=126 Identities=14% Similarity=0.024 Sum_probs=71.5
Q ss_pred HHHHHHHhHHhCCCCC---CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHc--cCChHHHHHHHH
Q 043686 14 GLSLFSELEKKSSIEI---DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLAR--AGLFDEARIFIQ 86 (282)
Q Consensus 14 A~~lf~~m~~~~g~~p---~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~--~g~~~~A~~l~~ 86 (282)
-..+++.+.. .+..- ....|=.|++.-...+ ..+.+-|. .++.| .|..+++||-- .+++++|.+.+-
T Consensus 29 L~~Ll~~i~~-~~~~~~~K~~l~~YlLlD~~~~~~--~~~~~~Fa~~f~ip~---~~~~~~~g~W~LD~~~~~~A~~~L~ 102 (226)
T PF13934_consen 29 LRALLDLILS-SNVSLLKKHSLFYYLLLDLDDTRP--SELAESFARAFGIPP---KYIKFIQGFWLLDHGDFEEALELLS 102 (226)
T ss_pred HHHHHHHHhc-CCcCHHHhHHHHHHHHHhcCcccc--ccHHHHHHHHhCCCH---HHHHHHHHHHHhChHhHHHHHHHhC
Confidence 4556666665 44321 1233333443311111 33344343 67766 56667777654 478889988875
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 87 EYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 87 ~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
.-.+.|+-.. -++.++...|+.+.|.++++-+.. .+.+...-..++.. ..++.+.+|..
T Consensus 103 ~ps~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p-~l~s~~~~~~~~~~-La~~~v~EAf~ 161 (226)
T PF13934_consen 103 HPSLIPWFPD--KILQALLRRGDPKLALRYLRAVGP-PLSSPEALTLYFVA-LANGLVTEAFS 161 (226)
T ss_pred CCCCCcccHH--HHHHHHHHCCChhHHHHHHHhcCC-CCCCHHHHHHHHHH-HHcCCHHHHHH
Confidence 5433344333 378888888999999999886642 11122333444444 56688888887
No 352
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=41.49 E-value=1.6e+02 Score=23.66 Aligned_cols=39 Identities=21% Similarity=0.167 Sum_probs=18.5
Q ss_pred HHHHHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 043686 69 VSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIH 107 (282)
Q Consensus 69 i~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~ 107 (282)
+-.|.+.|.+++|.++++..--.|+....-.-+....+.
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHHc
Confidence 344555566666666665532244444444444433333
No 353
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.90 E-value=99 Score=26.77 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=29.6
Q ss_pred CCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 043686 90 MERYPEV-LRALLEGCRIHVQVKTGKRVIDQLCELKP 125 (282)
Q Consensus 90 ~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~p 125 (282)
+.||..+ ||.-|..-.+.|++++|+++.+|.+++.-
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 5677555 57999999999999999999999986654
No 354
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=40.82 E-value=61 Score=27.03 Aligned_cols=56 Identities=16% Similarity=0.086 Sum_probs=41.6
Q ss_pred HHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686 72 LARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS 127 (282)
Q Consensus 72 ~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~ 127 (282)
..+.|+-+.|-+++.+.- ..|. ...|--+-..--+.|+++.|.+.+++..+++|++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345677778888887754 4454 7778888888888888888888888887777754
No 355
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=40.63 E-value=50 Score=30.41 Aligned_cols=114 Identities=11% Similarity=0.082 Sum_probs=67.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHH-HHHHH-HccCChHHHHHHHHhcCC-CCCHH-------
Q 043686 26 SIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHAL-MVSVL-ARAGLFDEARIFIQEYHM-ERYPE------- 95 (282)
Q Consensus 26 g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~-li~~~-~~~g~~~~A~~l~~~m~~-~p~~~------- 95 (282)
|+.||-++|.+=..+--+.-+...|++-++ -+-||...-.+ .-+.- ...|.-..-+++|+.+++ .|+++
T Consensus 410 ~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLe-iLIPd~~~~~~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~ctk~~ 488 (650)
T KOG4334|consen 410 GVLPDLFPYGSGVGASKKTAKLVAARDTLE-ILIPDLRVSEDNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEMCTKCA 488 (650)
T ss_pred cccccccccccccccchHHHHHHHHHHHHH-HhcchhhhcccccccccccccccchhHHHHhhcccccCchHHHHhhhcC
Confidence 677888888776665555556666666665 23344332222 00110 112344455678887762 34432
Q ss_pred ---HHHHHHHHHHhcCChh-----------------------------------HHHHHHHHHH--hcCCCChhHHHHHH
Q 043686 96 ---VLRALLEGCRIHVQVK-----------------------------------TGKRVIDQLC--ELKPLSAENYIMLS 135 (282)
Q Consensus 96 ---~~~~li~~~~~~g~~~-----------------------------------~A~~~~~~m~--~~~p~~~~~~~~Li 135 (282)
.|+.|..++.|+-.|. ++.++-.+-. .+.| +.-||-+|+
T Consensus 489 ~psPy~iL~~cl~Rn~g~~d~~ik~E~i~~~nqkse~im~~Gkht~~~~cknkr~gkQlASQ~ilq~lHP-h~~twGSlL 567 (650)
T KOG4334|consen 489 IPSPYNILRDCLSRNLGWNDLVIKKEMIGNGNQKSEVIMILGKHTEEAECKNKRQGKQLASQRILQKLHP-HLLTWGSLL 567 (650)
T ss_pred CCCHHHHHHHHHHhhcCCcceeeeeeccCCCCccceeEeeeccceeeeeeechhHHHHHHHHHHHHHhCH-HhhhHHHHH
Confidence 3788888877665441 4444444322 4678 779999999
Q ss_pred HHHHHc
Q 043686 136 NWYAAE 141 (282)
Q Consensus 136 ~~y~~~ 141 (282)
++|++.
T Consensus 568 riYGr~ 573 (650)
T KOG4334|consen 568 RIYGRL 573 (650)
T ss_pred HHhhhh
Confidence 999987
No 356
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=39.33 E-value=25 Score=31.83 Aligned_cols=51 Identities=10% Similarity=0.045 Sum_probs=39.9
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCC---CCCHHHHHHHHHHHhcCCCHHHHHHHhh
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSI---EIDPLTFAAVLHACSTAGMVEEGWLCFN 55 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~---~p~~~ty~~ll~a~~~~g~~~~a~~l~~ 55 (282)
-+|+.|+....+.+|+...+ -|- +.=+..|+-|-+||.-.+++++|.+.+.
T Consensus 26 RLck~gdcraGv~ff~aA~q-vGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQ-VGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHhccchhhhHHHHHHHHH-hcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 37899999999999999887 653 2223456667778888889999999887
No 357
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=39.23 E-value=1.8e+02 Score=28.35 Aligned_cols=68 Identities=12% Similarity=0.146 Sum_probs=48.2
Q ss_pred HHHHHHHccCChHHHHHHHHhcCCCC--C---HHHHHHHHHHHHhcCChh------HHHHHHHHHHhcCCCChhHHHHHH
Q 043686 67 LMVSVLARAGLFDEARIFIQEYHMER--Y---PEVLRALLEGCRIHVQVK------TGKRVIDQLCELKPLSAENYIMLS 135 (282)
Q Consensus 67 ~li~~~~~~g~~~~A~~l~~~m~~~p--~---~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~~p~~~~~~~~Li 135 (282)
+|..++...|++-.+.++++..-..| | ...||.-|....+.|.++ .|.++++... ++-++ .||..|+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~-ln~d~-~t~all~ 110 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR-LNGDS-LTYALLC 110 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh-cCCcc-hHHHHHH
Confidence 89999999999999999999864111 2 567899999999999876 4455555443 34433 5665544
Q ss_pred H
Q 043686 136 N 136 (282)
Q Consensus 136 ~ 136 (282)
.
T Consensus 111 ~ 111 (1117)
T COG5108 111 Q 111 (1117)
T ss_pred H
Confidence 3
No 358
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.68 E-value=2.3e+02 Score=28.31 Aligned_cols=116 Identities=14% Similarity=0.055 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhh-ccCCCCh--hHHHHHHHHHHccCChHHHHHHHHh-cC-CCCCHHHHHHHHHHHHhc
Q 043686 33 TFAAVLHACSTAGMVEEGWLCFN-RIRSPKV--THHALMVSVLARAGLFDEARIFIQE-YH-MERYPEVLRALLEGCRIH 107 (282)
Q Consensus 33 ty~~ll~a~~~~g~~~~a~~l~~-~g~~p~~--~~~~~li~~~~~~g~~~~A~~l~~~-m~-~~p~~~~~~~li~~~~~~ 107 (282)
+.-+-|+.+.+...++-|..+-+ .+..|+. ...-.-.+-+.+.|++++|..-+-+ ++ ++|.. +|.-|-..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~-----Vi~kfLda 410 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE-----VIKKFLDA 410 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH-----HHHHhcCH
Confidence 34455666666667777777766 4444432 1222233445567778877777655 33 34432 33334444
Q ss_pred CChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686 108 VQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 108 g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
.++.+-..+++...+-.-.+...-+.|+..|.|.++.++-.+..+.
T Consensus 411 q~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred HHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 4444444444444433323445667888888888887776663333
No 359
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=38.30 E-value=2.5e+02 Score=23.81 Aligned_cols=112 Identities=11% Similarity=0.064 Sum_probs=72.7
Q ss_pred hcCCCHHHHHHHhh-----c-cCCCCh------hHHHHHHHHHHccCChHHHHHHHHh----------cC-CCCC-----
Q 043686 42 STAGMVEEGWLCFN-----R-IRSPKV------THHALMVSVLARAGLFDEARIFIQE----------YH-MERY----- 93 (282)
Q Consensus 42 ~~~g~~~~a~~l~~-----~-g~~p~~------~~~~~li~~~~~~g~~~~A~~l~~~----------m~-~~p~----- 93 (282)
.+.|+++.|...+. . ...|+. ..||.=.+.+.+..++++|...+++ +. ..|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888888888 2 445543 3455555556555477777666654 21 3444
Q ss_pred HHHHHHHHHHHHhcCChh---HHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686 94 PEVLRALLEGCRIHVQVK---TGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 94 ~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
..+...|+.+|...+..+ +|.++.+.+.+-.|+.+..+..=++.+.+.++.+.+.+.+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~ 146 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMR 146 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHH
Confidence 356788888888877655 566666667666676667887777887776666666654333
No 360
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=38.18 E-value=82 Score=26.47 Aligned_cols=111 Identities=7% Similarity=0.002 Sum_probs=64.7
Q ss_pred HhcCCCHHHHHHHhh--ccCCCChhHH-HHHHHHHHccCChHHHHHHHHh-cCCCCCHH-HHHHHHHHHHhcCChhHHHH
Q 043686 41 CSTAGMVEEGWLCFN--RIRSPKVTHH-ALMVSVLARAGLFDEARIFIQE-YHMERYPE-VLRALLEGCRIHVQVKTGKR 115 (282)
Q Consensus 41 ~~~~g~~~~a~~l~~--~g~~p~~~~~-~~li~~~~~~g~~~~A~~l~~~-m~~~p~~~-~~~~li~~~~~~g~~~~A~~ 115 (282)
|-...+++.|...+. .-+.|++.+| +.=+.+|-+..+++.+..=-.. .++.||.+ ....|-.+......+++|..
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 445556777777665 6677777554 4566677777777766654443 33677744 34445556777777888888
Q ss_pred HHHHHHh---cCC--CChhHHHHHHHHHHHcCchhhhhccc
Q 043686 116 VIDQLCE---LKP--LSAENYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 116 ~~~~m~~---~~p--~~~~~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
.+.+... ..| .-...+..|.++=-+-=.+.++.+..
T Consensus 100 ~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~ 140 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIR 140 (284)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHH
Confidence 8887752 222 12355666655433333333333333
No 361
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=37.15 E-value=2e+02 Score=22.51 Aligned_cols=90 Identities=12% Similarity=0.020 Sum_probs=58.7
Q ss_pred hccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCChhHHHH
Q 043686 55 NRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLC-ELKPLSAENYIM 133 (282)
Q Consensus 55 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~p~~~~~~~~ 133 (282)
..++.|+...|.-+|+.+.+.|++..-..++.-=. -||...-...+-.+.. ....+.++=-.|. .++ ..+..
T Consensus 22 ~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V-i~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~----~~~~~ 94 (167)
T PF07035_consen 22 QHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV-IPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLG----TAYEE 94 (167)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc-cCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhh----hhHHH
Confidence 37899999999999999999999998888877644 4443333333322222 2344444444444 222 35666
Q ss_pred HHHHHHHcCchhhhhccc
Q 043686 134 LSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 134 Li~~y~~~g~~~~A~~~~ 151 (282)
+++.+-..|++-+|.+..
T Consensus 95 iievLL~~g~vl~ALr~a 112 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYA 112 (167)
T ss_pred HHHHHHhCCCHHHHHHHH
Confidence 777777888888887744
No 362
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.46 E-value=2.3e+02 Score=27.30 Aligned_cols=101 Identities=8% Similarity=-0.086 Sum_probs=73.4
Q ss_pred HhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043686 41 CSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQL 120 (282)
Q Consensus 41 ~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 120 (282)
..+.|+++.|.++... .-+..-|..|-++..+.|++..|.+.|.... -|.+|+-.+...|+-+.-..+-...
T Consensus 647 al~lgrl~iA~~la~e--~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~ 718 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVE--ANSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLA 718 (794)
T ss_pred hhhcCcHHHHHHHHHh--hcchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHH
Confidence 3467999999988761 1245789999999999999999999998865 4677888888888877666665555
Q ss_pred HhcCCCChhHHHHHHHHHHHcCchhhhhccccee
Q 043686 121 CELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWI 154 (282)
Q Consensus 121 ~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~ 154 (282)
++-.-.| ..| -+|...|++++..++....
T Consensus 719 ~~~g~~N-~AF----~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 719 KKQGKNN-LAF----LAYFLSGDYEECLELLIST 747 (794)
T ss_pred Hhhcccc-hHH----HHHHHcCCHHHHHHHHHhc
Confidence 5443333 333 4567788888888755443
No 363
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=35.80 E-value=2.7e+02 Score=25.30 Aligned_cols=92 Identities=11% Similarity=0.018 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHhhccCCCCh----------------hHHHHHHHHHHccCChHHHHHHHHhcCC---
Q 043686 30 DPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKV----------------THHALMVSVLARAGLFDEARIFIQEYHM--- 90 (282)
Q Consensus 30 ~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~----------------~~~~~li~~~~~~g~~~~A~~l~~~m~~--- 90 (282)
+..+--.++.++....++.+-.+..+.|..|+. ++...|+..+|=.||+..|.++++.+.+
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Confidence 444444456666666667666555553333322 3445667777888999999998887641
Q ss_pred -----CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 91 -----ER--YPEVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 91 -----~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
.| .+.+|-.+-=+|.=.+++.+|.+.|....
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 24566667777777788888888888765
No 364
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=35.59 E-value=1.1e+02 Score=22.86 Aligned_cols=46 Identities=20% Similarity=0.334 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCChhHHHHHHH
Q 043686 90 MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC-ELKPLSAENYIMLSN 136 (282)
Q Consensus 90 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~p~~~~~~~~Li~ 136 (282)
+.|+..+--.-+.+|-+.+++-.|.++|+-.+ ++.+.. ..|-.+++
T Consensus 80 lVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k-~~Y~y~v~ 126 (149)
T KOG4077|consen 80 LVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQK-QVYPYYVK 126 (149)
T ss_pred cCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHH-HHHHHHHH
Confidence 67888888999999999999999999999988 555533 45655443
No 365
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=35.47 E-value=83 Score=17.53 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHH--HHHhcCC
Q 043686 97 LRALLEGCRIHVQVKTGKRVID--QLCELKP 125 (282)
Q Consensus 97 ~~~li~~~~~~g~~~~A~~~~~--~m~~~~p 125 (282)
|-++--.+-..|+.++|..+|+ -..-+.|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 4445556777788888888844 5444444
No 366
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.11 E-value=3.9e+02 Score=25.13 Aligned_cols=143 Identities=11% Similarity=0.042 Sum_probs=89.6
Q ss_pred hhcCChHHHHHHHHHhHHhCCCCCC--H-----HHHHHHHHHHhc-CCCHHHHHHHhh----ccCCCC--hhHHHHHHHH
Q 043686 6 SLHGQRELGLSLFSELEKKSSIEID--P-----LTFAAVLHACST-AGMVEEGWLCFN----RIRSPK--VTHHALMVSV 71 (282)
Q Consensus 6 ~~~g~~~~A~~lf~~m~~~~g~~p~--~-----~ty~~ll~a~~~-~g~~~~a~~l~~----~g~~p~--~~~~~~li~~ 71 (282)
.-.|++.+|++-...|+++..-.|. . .....++.-|+. .+.++.|..-|. .--.-| ...-..+--.
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 3479999999999999886555565 2 223446666655 588888888887 111112 2222345566
Q ss_pred HHccCChHHHHHHHHhcCCCCCHHHHHHH--------HHH--HHhcCChhHHHHHHHHHHhcC-CC-----ChhHHHHHH
Q 043686 72 LARAGLFDEARIFIQEYHMERYPEVLRAL--------LEG--CRIHVQVKTGKRVIDQLCELK-PL-----SAENYIMLS 135 (282)
Q Consensus 72 ~~~~g~~~~A~~l~~~m~~~p~~~~~~~l--------i~~--~~~~g~~~~A~~~~~~m~~~~-p~-----~~~~~~~Li 135 (282)
|-+.|+.++-.++++... .||..++.+. +.| -.+.+++.||.+..++-.++. .. ..-....|-
T Consensus 414 YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs 492 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLS 492 (629)
T ss_pred HHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Confidence 888999999999999887 5554443321 222 245679999999999877432 10 112233444
Q ss_pred HHHHHcCchhhhhc
Q 043686 136 NWYAAEAKWDVVNQ 149 (282)
Q Consensus 136 ~~y~~~g~~~~A~~ 149 (282)
..+--.|+.-++.+
T Consensus 493 ~v~lslgn~~es~n 506 (629)
T KOG2300|consen 493 HVFLSLGNTVESRN 506 (629)
T ss_pred HHHHHhcchHHHHh
Confidence 55556677666655
No 367
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=34.23 E-value=1.9e+02 Score=21.30 Aligned_cols=40 Identities=10% Similarity=0.194 Sum_probs=26.9
Q ss_pred HHHHHHHHHH--hcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686 112 TGKRVIDQLC--ELKPLSAENYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 112 ~A~~~~~~m~--~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
.+.++|+.|. ++.-..+..|......+...|++.+|.+++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~ 122 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIY 122 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777 455555567777777777777777776543
No 368
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=33.92 E-value=3e+02 Score=26.08 Aligned_cols=67 Identities=9% Similarity=-0.028 Sum_probs=46.4
Q ss_pred ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcCCCC--C--HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043686 56 RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYHMER--Y--PEVLRALLEGCRIHVQVKTGKRVIDQLCE 122 (282)
Q Consensus 56 ~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p--~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 122 (282)
.|+... ......|+.-|-+.+++++|..++..|.... . ..+.+.+.+..-+..--++.+..++.+.+
T Consensus 401 ~G~~~~G~l~~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 401 LGVFTRGDLGLVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred eccccCCcccHHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 344443 3455678999999999999999999998332 2 23445555566666656677777777775
No 369
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=33.84 E-value=53 Score=29.83 Aligned_cols=117 Identities=11% Similarity=-0.005 Sum_probs=82.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhh--------ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-----C-CCC--HH
Q 043686 33 TFAAVLHACSTAGMVEEGWLCFN--------RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-----M-ERY--PE 95 (282)
Q Consensus 33 ty~~ll~a~~~~g~~~~a~~l~~--------~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-----~-~p~--~~ 95 (282)
.|..|-+.|--.|+++.|...++ .|-+.. ...++.|-+++.-.|+++.|.+.++.-- + ... .-
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45566666666778999988887 333332 4567788888888999999999887621 1 222 34
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH----hcC--CCChhHHHHHHHHHHHcCchhhhhc
Q 043686 96 VLRALLEGCRIHVQVKTGKRVIDQLC----ELK--PLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 96 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~~--p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
+..+|-.+|.-...+++|..++.+=. +++ .-...+|-+|-.+|...|.-++|..
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 56778888888888899988887643 221 1123677788889988888888876
No 370
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=33.61 E-value=2.6e+02 Score=22.66 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhc
Q 043686 97 LRALLEGCRIHVQVKTGKRVIDQLCEL 123 (282)
Q Consensus 97 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 123 (282)
|..|+..-.+....+++.++.++|.++
T Consensus 142 W~~l~~~~~~~~~~~~~~~l~~ri~El 168 (199)
T PF04090_consen 142 WILLIQEEDRESELDSYQQLIERIDEL 168 (199)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 555666555556677788888888864
No 371
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=32.36 E-value=2.1e+02 Score=25.97 Aligned_cols=39 Identities=13% Similarity=0.002 Sum_probs=26.7
Q ss_pred HHHHHhHHhCCCCCCHH---HHHHHHHHHhcCCCHHHHHHHhh
Q 043686 16 SLFSELEKKSSIEIDPL---TFAAVLHACSTAGMVEEGWLCFN 55 (282)
Q Consensus 16 ~lf~~m~~~~g~~p~~~---ty~~ll~a~~~~g~~~~a~~l~~ 55 (282)
.+++.+.+ .|+.|+.+ +-.+++.|+.-.+..++-.+++.
T Consensus 100 Gv~kaL~e-~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~ 141 (391)
T cd07229 100 GVVKALWL-RGLLPRIITGTATGALIAALVGVHTDEELLRFLD 141 (391)
T ss_pred HHHHHHHH-cCCCCceEEEecHHHHHHHHHHcCCHHHHHHHHh
Confidence 45666677 88888875 45567776666666677777665
No 372
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=32.13 E-value=3.4e+02 Score=23.61 Aligned_cols=146 Identities=8% Similarity=-0.016 Sum_probs=89.5
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHH-------HHHHHHhcCCCHHHHHHHhh-------ccCCC-ChhHHHH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFA-------AVLHACSTAGMVEEGWLCFN-------RIRSP-KVTHHAL 67 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~-------~ll~a~~~~g~~~~a~~l~~-------~g~~p-~~~~~~~ 67 (282)
+...+..++++|+.++.+... .|+..|..|.| .+.+.|...|+...-.+... .=-.| .+.+..+
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~-kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILG-KGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhc-CCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 345678899999999999998 99888776544 46677888887655444443 11122 3455667
Q ss_pred HHHHHHcc-CChHHHHHHHHhcC---CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHH----hc--CCCChhHHH
Q 043686 68 MVSVLARA-GLFDEARIFIQEYH---MERY-----PEVLRALLEGCRIHVQVKTGKRVIDQLC----EL--KPLSAENYI 132 (282)
Q Consensus 68 li~~~~~~-g~~~~A~~l~~~m~---~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~--~p~~~~~~~ 132 (282)
||+-+-.. ..+++-.++..... .+-+ ...=.-+|..+.+.|.+.+|..+..-.. +. .|+-+..+.
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhl 169 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHL 169 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhh
Confidence 77776544 33555555554421 0111 1223557889999999999998876554 32 232223333
Q ss_pred HHHHHHHHcCchhhhhc
Q 043686 133 MLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 133 ~Li~~y~~~g~~~~A~~ 149 (282)
.=-..|-+...+.++..
T Consensus 170 lESKvyh~irnv~Kska 186 (421)
T COG5159 170 LESKVYHEIRNVSKSKA 186 (421)
T ss_pred hhHHHHHHHHhhhhhhh
Confidence 33455666666666554
No 373
>PHA02875 ankyrin repeat protein; Provisional
Probab=31.91 E-value=1.1e+02 Score=27.40 Aligned_cols=80 Identities=11% Similarity=-0.009 Sum_probs=49.8
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCHHH--HHHHHHHHhcCCCHHHHHHHhhccCCCChh--HHHHHHHHHHccCChH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDPLT--FAAVLHACSTAGMVEEGWLCFNRIRSPKVT--HHALMVSVLARAGLFD 79 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~t--y~~ll~a~~~~g~~~~a~~l~~~g~~p~~~--~~~~li~~~~~~g~~~ 79 (282)
.-++.|+.+-+..++ + .|..|+... ..+.+...+..|+.+-+.-+++.|..|+.. ...+-+...++.|+.+
T Consensus 8 ~A~~~g~~~iv~~Ll----~-~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~ 82 (413)
T PHA02875 8 DAILFGELDIARRLL----D-IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVK 82 (413)
T ss_pred HHHHhCCHHHHHHHH----H-CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHH
Confidence 345566665544443 4 566666533 344556666778888777777777666533 2234566667788888
Q ss_pred HHHHHHHhc
Q 043686 80 EARIFIQEY 88 (282)
Q Consensus 80 ~A~~l~~~m 88 (282)
.+..+++.-
T Consensus 83 ~v~~Ll~~~ 91 (413)
T PHA02875 83 AVEELLDLG 91 (413)
T ss_pred HHHHHHHcC
Confidence 888887654
No 374
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=31.80 E-value=2.2e+02 Score=26.64 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=22.8
Q ss_pred ccCChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 74 RAGLFDEARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 74 ~~g~~~~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
..|+++.+...+.... +.....+--.++....+.|++++|..+-..|.
T Consensus 335 ~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l 384 (831)
T PRK15180 335 HLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMML 384 (831)
T ss_pred HhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 3445555555544432 22333444445555555555555555555444
No 375
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=31.32 E-value=1.9e+02 Score=21.57 Aligned_cols=57 Identities=9% Similarity=-0.112 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHH-------hcCCCChhHHHHHH----HHHHHcCchhhhhc
Q 043686 93 YPEVLRALLEGCRIHVQVKTGKRVIDQLC-------ELKPLSAENYIMLS----NWYAAEAKWDVVNQ 149 (282)
Q Consensus 93 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~~p~~~~~~~~Li----~~y~~~g~~~~A~~ 149 (282)
|...+..|-.++.+.|++++++..-+... +++.+.-.-|...+ -++-..|+.++|..
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~ 121 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALK 121 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHH
Confidence 46778888889999999998777666654 45554445555433 23444555555543
No 376
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=30.50 E-value=1.7e+02 Score=28.26 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=11.0
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCC
Q 043686 104 CRIHVQVKTGKRVIDQLCELKPLS 127 (282)
Q Consensus 104 ~~~~g~~~~A~~~~~~m~~~~p~~ 127 (282)
+...|++++|++.+++. ++-|.+
T Consensus 515 ~~~~g~~~~AL~~i~~L-~liP~~ 537 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKL-DLIPLD 537 (613)
T ss_dssp HHHTT-HHHHHHHHHHT-T-S-S-
T ss_pred HHHcCCHHHHHHHHHhC-CCCCCC
Confidence 45566666666666655 345533
No 377
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.44 E-value=5.7e+02 Score=25.76 Aligned_cols=38 Identities=18% Similarity=0.122 Sum_probs=24.1
Q ss_pred cCChhHHHHHHHHHH----------------hcCCCChhHHHHHHHHHHHcCchhh
Q 043686 107 HVQVKTGKRVIDQLC----------------ELKPLSAENYIMLSNWYAAEAKWDV 146 (282)
Q Consensus 107 ~g~~~~A~~~~~~m~----------------~~~p~~~~~~~~Li~~y~~~g~~~~ 146 (282)
.+++++|.+.++.+. .-.| + .|-..|+..|...++.++
T Consensus 503 ~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~h~P-~-~t~~ili~~~t~~~~~~~ 556 (933)
T KOG2114|consen 503 LHNYEEALRYISSLPISELLRTLNKYGKILLEHDP-E-ETMKILIELITELNSQGK 556 (933)
T ss_pred hcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhCh-H-HHHHHHHHHHhhcCCCCC
Confidence 467888888877553 1234 3 577778887777665433
No 378
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.16 E-value=2.2e+02 Score=23.66 Aligned_cols=15 Identities=13% Similarity=0.147 Sum_probs=7.4
Q ss_pred HHHHHHcCchhhhhc
Q 043686 135 SNWYAAEAKWDVVNQ 149 (282)
Q Consensus 135 i~~y~~~g~~~~A~~ 149 (282)
..-|.+.|++++|.+
T Consensus 185 A~ey~~~g~~~~A~~ 199 (247)
T PF11817_consen 185 AEEYFRLGDYDKALK 199 (247)
T ss_pred HHHHHHCCCHHHHHH
Confidence 344445555555554
No 379
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=30.05 E-value=1.3e+02 Score=20.43 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHccCChHHHHHHH
Q 043686 63 THHALMVSVLARAGLFDEARIFI 85 (282)
Q Consensus 63 ~~~~~li~~~~~~g~~~~A~~l~ 85 (282)
.+...|+.+|+..|++.++.+.-
T Consensus 44 ~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 44 RVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777766543
No 380
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=30.01 E-value=2.3e+02 Score=26.79 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=15.6
Q ss_pred hhhhhhcCChHHHHHHHHHhHH
Q 043686 2 ILGYSLHGQRELGLSLFSELEK 23 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~ 23 (282)
+.-|.+.+++++|+.++..|.-
T Consensus 415 ~~~yl~~~qi~eAi~lL~smnW 436 (545)
T PF11768_consen 415 ISQYLRCDQIEEAINLLLSMNW 436 (545)
T ss_pred HHHHHhcCCHHHHHHHHHhCCc
Confidence 4557777777777777777754
No 381
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=29.99 E-value=2.2e+02 Score=22.71 Aligned_cols=94 Identities=15% Similarity=0.133 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHH-------HHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecCeEEEEecCC
Q 043686 95 EVLRALLEGCRIHVQVKTGKRVID-------QLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGD 167 (282)
Q Consensus 95 ~~~~~li~~~~~~g~~~~A~~~~~-------~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~i~~~ 167 (282)
.-|...+.-+++.....++.++++ +...++|+...++..|-.+|...+.+-.-.
T Consensus 29 ~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~------------------- 89 (186)
T PF06552_consen 29 TNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDT------------------- 89 (186)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---H-------------------
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCCh-------------------
Confidence 446555555655555445544444 445789988889999999988776521110
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhhhhh
Q 043686 168 VSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQI 212 (282)
Q Consensus 168 ~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~~ 212 (282)
.+.++-+++...-|+.-. ...|+..+|...+.-..|.-.+
T Consensus 90 ---~~A~~~F~kA~~~FqkAv--~~~P~ne~Y~ksLe~~~kap~l 129 (186)
T PF06552_consen 90 ---AEAEEYFEKATEYFQKAV--DEDPNNELYRKSLEMAAKAPEL 129 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHH--HH-TT-HHHHHHHHHHHTHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHH--hcCCCcHHHHHHHHHHHhhHHH
Confidence 001111122224444332 3578888887777766666555
No 382
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=29.73 E-value=1.7e+02 Score=23.58 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=37.2
Q ss_pred hHHHHHHHHhcC--C-CCC--HHH-----HHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 043686 78 FDEARIFIQEYH--M-ERY--PEV-----LRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAE 141 (282)
Q Consensus 78 ~~~A~~l~~~m~--~-~p~--~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~ 141 (282)
++.|..+++.+. . .|. ... --..+..|.+.|.+++|.++++...+ +|++ ...-.-+....+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~-~~~r~kL~~II~~ 156 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPES-QKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCc-hhHHHHHHHHHHc
Confidence 456777776654 1 221 111 22335569999999999999999887 6654 3334333333333
No 383
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=29.73 E-value=2.6e+02 Score=21.41 Aligned_cols=84 Identities=11% Similarity=0.072 Sum_probs=57.4
Q ss_pred cCCCCh--hHHHHHHHHHHccCChHHHHHHHHhcC-CC-------CCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHh--c
Q 043686 57 IRSPKV--THHALMVSVLARAGLFDEARIFIQEYH-ME-------RYPEVLRALLEGCRIHVQ-VKTGKRVIDQLCE--L 123 (282)
Q Consensus 57 g~~p~~--~~~~~li~~~~~~g~~~~A~~l~~~m~-~~-------p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~--~ 123 (282)
+..++. ...|+++.-...-+++.....+++.+. +. .|-.+|++++.+..+... ---+..+|.-|++ .
T Consensus 32 ~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~ 111 (145)
T PF13762_consen 32 NASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDI 111 (145)
T ss_pred ccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCC
Confidence 344443 345777777777778888888777765 22 234578999999977766 4457888888885 3
Q ss_pred CCCChhHHHHHHHHHHHc
Q 043686 124 KPLSAENYIMLSNWYAAE 141 (282)
Q Consensus 124 ~p~~~~~~~~Li~~y~~~ 141 (282)
.+ ++.-|..||+...+.
T Consensus 112 ~~-t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 112 EF-TPSDYSCLIKAALRG 128 (145)
T ss_pred CC-CHHHHHHHHHHHHcC
Confidence 33 557788888876554
No 384
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=29.39 E-value=3.1e+02 Score=24.33 Aligned_cols=77 Identities=6% Similarity=0.034 Sum_probs=51.3
Q ss_pred HHHHHhcCCCHHHHHHHhh-------ccCCCChhHHH--HHHHHHHccCChHHHHHHHHhcC--------CCCCHH-HHH
Q 043686 37 VLHACSTAGMVEEGWLCFN-------RIRSPKVTHHA--LMVSVLARAGLFDEARIFIQEYH--------MERYPE-VLR 98 (282)
Q Consensus 37 ll~a~~~~g~~~~a~~l~~-------~g~~p~~~~~~--~li~~~~~~g~~~~A~~l~~~m~--------~~p~~~-~~~ 98 (282)
++...-+.++.++|.+.++ .--.|+.+.|. .+...+-..|+..++++++++.+ +.|++. .|+
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 3344445568888888888 44556777664 56666778899999988887643 567655 466
Q ss_pred HHHHHHHh-cCChhHH
Q 043686 99 ALLEGCRI-HVQVKTG 113 (282)
Q Consensus 99 ~li~~~~~-~g~~~~A 113 (282)
.+-+-|.+ .|++...
T Consensus 161 ~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHHHHhHHHH
Confidence 66665554 4666643
No 385
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.11 E-value=2e+02 Score=27.84 Aligned_cols=77 Identities=14% Similarity=0.056 Sum_probs=56.4
Q ss_pred HccCChHHHHHHHHh-cC-CCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCch
Q 043686 73 ARAGLFDEARIFIQE-YH-MERY------PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKW 144 (282)
Q Consensus 73 ~~~g~~~~A~~l~~~-m~-~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~ 144 (282)
.+..++..+.+.|.. |. +..| .-....|--+|-+..+.|+|.+++.+..+.+|.++.+---+.....-.|.-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 456677788887765 54 2222 234566777888999999999999999999997766655666777777777
Q ss_pred hhhhc
Q 043686 145 DVVNQ 149 (282)
Q Consensus 145 ~~A~~ 149 (282)
++|..
T Consensus 445 e~AL~ 449 (872)
T KOG4814|consen 445 EEALT 449 (872)
T ss_pred HHHHH
Confidence 77766
No 386
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=28.04 E-value=49 Score=30.43 Aligned_cols=106 Identities=11% Similarity=-0.027 Sum_probs=0.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecCeEEEEecCCCCCCChHHHHHHH
Q 043686 101 LEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFWEL 180 (282)
Q Consensus 101 i~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~ 180 (282)
.....+.+.++.|..++.++.+++|+.++.|..=..++.+.+.+..|..-........ -+.+.+|.+.|..-.+...-
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHH
Q ss_pred HHHHHHHHhC-CCccCCCcccccchhhhh
Q 043686 181 QSLMKKMEGD-SLRPKPDFSLHYVDEERK 208 (282)
Q Consensus 181 ~~l~~~M~~~-g~~pd~~t~~~~~~~~~~ 208 (282)
.+-+...+.. -+.|+..-+...+..|.+
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHHHH
No 387
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=28.01 E-value=1e+02 Score=21.98 Aligned_cols=46 Identities=17% Similarity=0.129 Sum_probs=33.2
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHH
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVE 48 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~ 48 (282)
+..+...+..-.|.++++++.+ .+..++..|---.|+.+...|.+.
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~-~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRK-KGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhCCCEE
Confidence 3445555666778888888888 777777777777777788877754
No 388
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=27.26 E-value=78 Score=21.03 Aligned_cols=19 Identities=16% Similarity=-0.011 Sum_probs=9.3
Q ss_pred cCCCHHHHHHHhhccCCCC
Q 043686 43 TAGMVEEGWLCFNRIRSPK 61 (282)
Q Consensus 43 ~~g~~~~a~~l~~~g~~p~ 61 (282)
..|..+-..-+++.|..|+
T Consensus 35 ~~~~~~~~~~Ll~~g~~~~ 53 (89)
T PF12796_consen 35 ENGNLEIVKLLLENGADIN 53 (89)
T ss_dssp HTTTHHHHHHHHHTTTCTT
T ss_pred HcCCHHHHHHHHHhccccc
Confidence 4455555555555444443
No 389
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=26.85 E-value=76 Score=27.45 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=28.4
Q ss_pred ccCCCChhHH-HHHHHHHHccCChHHHHHHHHhcC
Q 043686 56 RIRSPKVTHH-ALMVSVLARAGLFDEARIFIQEYH 89 (282)
Q Consensus 56 ~g~~p~~~~~-~~li~~~~~~g~~~~A~~l~~~m~ 89 (282)
..+.||..+| +.-|..-.+.||+++|+++++|.+
T Consensus 250 ~~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe 284 (303)
T PRK10564 250 EPMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAE 284 (303)
T ss_pred CccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455776654 699999999999999999999976
No 390
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=26.03 E-value=50 Score=20.61 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=24.0
Q ss_pred HHHHHHHhCCCccCCCcccccchhhhh
Q 043686 182 SLMKKMEGDSLRPKPDFSLHYVDEERK 208 (282)
Q Consensus 182 ~l~~~M~~~g~~pd~~t~~~~~~~~~~ 208 (282)
.+|+.|..+.+.|.+..+...++.+..
T Consensus 13 ~vFK~~pSr~YD~~Tr~W~F~L~Dy~~ 39 (55)
T PF07443_consen 13 AVFKQMPSRNYDPKTRKWNFSLEDYST 39 (55)
T ss_pred HHHHcCcccccCccceeeeeeHHHHHH
Confidence 999999999999999999998886644
No 391
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=25.73 E-value=2.3e+02 Score=19.44 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=30.1
Q ss_pred HccCChHHHHHHHHhc----C--CCCC---HHHHH--HHHHHHHhcCChhHHHHHHHHHHh
Q 043686 73 ARAGLFDEARIFIQEY----H--MERY---PEVLR--ALLEGCRIHVQVKTGKRVIDQLCE 122 (282)
Q Consensus 73 ~~~g~~~~A~~l~~~m----~--~~p~---~~~~~--~li~~~~~~g~~~~A~~~~~~m~~ 122 (282)
.+.|++.+|.+-+.+. . ..+. ...+. .+.......|+.++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3567777775544442 2 2222 22232 234456777999999999999874
No 392
>PRK02287 hypothetical protein; Provisional
Probab=25.60 E-value=3.4e+02 Score=21.43 Aligned_cols=59 Identities=10% Similarity=0.070 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHH
Q 043686 62 VTHHALMVSVLARAGLFDEARIFIQEYHMERYPEV-LRALLEGCRIHVQVKTGKRVIDQL 120 (282)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m 120 (282)
..+--++..++.=.|..+.|.++++..+.-++-.. =.-++..|.+..+.++..++-++.
T Consensus 107 Ls~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~ 166 (171)
T PRK02287 107 LSSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEY 166 (171)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 34556777777778888888888777664444322 234677777777777666665543
No 393
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=25.40 E-value=2.5e+02 Score=19.81 Aligned_cols=58 Identities=21% Similarity=0.189 Sum_probs=32.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcC--ChhHHHHHHHHHHhc
Q 043686 65 HALMVSVLARAGLFDEARIFIQEYHMERY--PEVLRALLEGCRIHV--QVKTGKRVIDQLCEL 123 (282)
Q Consensus 65 ~~~li~~~~~~g~~~~A~~l~~~m~~~p~--~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~ 123 (282)
...+|.-|...|++++|.+-+.+++ .|+ ...-..+|..+...+ .-+....++..+.+.
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~-~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~ 66 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELK-LPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQA 66 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhC-CCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHc
Confidence 3457778888899999999999887 343 222233344333332 233344455554433
No 394
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=25.19 E-value=1.5e+02 Score=17.62 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=10.6
Q ss_pred HHHhcCCCHHHHHHHhhccCCCC
Q 043686 39 HACSTAGMVEEGWLCFNRIRSPK 61 (282)
Q Consensus 39 ~a~~~~g~~~~a~~l~~~g~~p~ 61 (282)
...++.|+.+....+++.|..|+
T Consensus 6 h~A~~~g~~~~~~~Ll~~~~din 28 (54)
T PF13637_consen 6 HWAARSGNLEIVKLLLEHGADIN 28 (54)
T ss_dssp HHHHHTT-HHHHHHHHHTTSGTT
T ss_pred HHHHHhCCHHHHHHHHHCCCCCC
Confidence 33444555555555555444443
No 395
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=25.03 E-value=1e+02 Score=28.63 Aligned_cols=85 Identities=18% Similarity=0.137 Sum_probs=47.8
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHH--HHHHHHHccCChH
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHA--LMVSVLARAGLFD 79 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~--~li~~~~~~g~~~ 79 (282)
+++.++.|+.+..++++..--. .++ |+..+-++-|..-++.|+..++.-++-+|-.|+..--+ +=++.-...|+-+
T Consensus 137 LhasvRt~nlet~LRll~lGA~-~N~-~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~ 214 (669)
T KOG0818|consen 137 LHSSVRTGNLETCLRLLSLGAQ-ANF-FHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHE 214 (669)
T ss_pred HHHHhhcccHHHHHHHHHcccc-cCC-CCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchH
Confidence 3456677777777777665443 332 45556667777777777777776666644444322222 1123333456666
Q ss_pred HHHHHHHhc
Q 043686 80 EARIFIQEY 88 (282)
Q Consensus 80 ~A~~l~~~m 88 (282)
-|+++++-+
T Consensus 215 laeRl~e~~ 223 (669)
T KOG0818|consen 215 LAERLVEIQ 223 (669)
T ss_pred HHHHHHHHH
Confidence 666665543
No 396
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=24.87 E-value=1.4e+02 Score=24.26 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHh
Q 043686 62 VTHHALMVSVLARAGLFDEARIFIQE 87 (282)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~l~~~ 87 (282)
...-|.-...+-+.|.+|.|..++++
T Consensus 181 Cqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 181 CQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 33444444445555555555555544
No 397
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=24.70 E-value=4.9e+02 Score=22.94 Aligned_cols=20 Identities=10% Similarity=0.188 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHcCchhhhh
Q 043686 129 ENYIMLSNWYAAEAKWDVVN 148 (282)
Q Consensus 129 ~~~~~Li~~y~~~g~~~~A~ 148 (282)
.+|.-|+.++|..|+.+-+.
T Consensus 322 K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HhhhHHHHHHhcCChHHHHH
Confidence 56777777777777765543
No 398
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=24.15 E-value=2.6e+02 Score=19.63 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=17.5
Q ss_pred HHHHHHHHccCChHHHHHHHHhcC
Q 043686 66 ALMVSVLARAGLFDEARIFIQEYH 89 (282)
Q Consensus 66 ~~li~~~~~~g~~~~A~~l~~~m~ 89 (282)
..+|.-|...|+.++|...++++.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 456667777788888888888876
No 399
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=23.66 E-value=3.5e+02 Score=26.13 Aligned_cols=95 Identities=7% Similarity=-0.036 Sum_probs=64.3
Q ss_pred cCChHHHHHHHHHhHHhCCCCCC--HHHHHHHHHHHhcCCCHHHHHHHhh--ccC-CCChhHHHHHHHHHHccCChHHHH
Q 043686 8 HGQRELGLSLFSELEKKSSIEID--PLTFAAVLHACSTAGMVEEGWLCFN--RIR-SPKVTHHALMVSVLARAGLFDEAR 82 (282)
Q Consensus 8 ~g~~~~A~~lf~~m~~~~g~~p~--~~ty~~ll~a~~~~g~~~~a~~l~~--~g~-~p~~~~~~~li~~~~~~g~~~~A~ 82 (282)
.|+...|...+..... ..|- .+..-.|-+...+.|....|..++. ..+ .....++-++..+|--..+++.|.
T Consensus 620 ~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 4677777777766543 2332 2334445556667788888888887 222 334567888889999999999999
Q ss_pred HHHHh-cCCCCC-HHHHHHHHHHHH
Q 043686 83 IFIQE-YHMERY-PEVLRALLEGCR 105 (282)
Q Consensus 83 ~l~~~-m~~~p~-~~~~~~li~~~~ 105 (282)
+.|++ |...|+ .++-+.|...-|
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99987 555555 677777765544
No 400
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=23.63 E-value=5.1e+02 Score=22.80 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=22.7
Q ss_pred HHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh
Q 043686 15 LSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN 55 (282)
Q Consensus 15 ~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~ 55 (282)
.++++.|++ .++.|.-.+|.-+.-.+++.=.+.+...+|+
T Consensus 263 ~EL~~~L~~-~~i~PqfyaFRWitLLLsQEF~lpDvi~lWD 302 (370)
T KOG4567|consen 263 EELWRHLEE-KEIHPQFYAFRWITLLLSQEFPLPDVIRLWD 302 (370)
T ss_pred HHHHHHHHh-cCCCccchhHHHHHHHHhccCCchhHHHHHH
Confidence 345555555 5666665555555555555555555555555
No 401
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=23.51 E-value=32 Score=25.95 Aligned_cols=25 Identities=24% Similarity=0.058 Sum_probs=22.2
Q ss_pred ccccccchHHHHHHHHHhhcceEEe
Q 043686 238 NLRMRHICHDFAKAISKMVEGEIII 262 (282)
Q Consensus 238 ~~~~~g~~~~a~~~~~~m~~~~~~~ 262 (282)
.+++.|+-.+|.++|.+|.++|-++
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pP 128 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPP 128 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCC
Confidence 5778899999999999999999764
No 402
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=23.48 E-value=42 Score=21.59 Aligned_cols=22 Identities=9% Similarity=0.012 Sum_probs=18.8
Q ss_pred chHHHHHHHHHhhcceEEeecC
Q 043686 244 ICHDFAKAISKMVEGEIIIKDP 265 (282)
Q Consensus 244 ~~~~a~~~~~~m~~~~~~~~~~ 265 (282)
|++.|.+.|.++..++-+++|.
T Consensus 40 d~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 40 DYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CHHHHHHHHHHHHhcCCCChhh
Confidence 6789999999999888877764
No 403
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=23.46 E-value=80 Score=21.40 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=26.1
Q ss_pred cchHHHHHHHHHhhcceEEeecCCccccccCCcc
Q 043686 243 HICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFC 276 (282)
Q Consensus 243 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 276 (282)
.+-.+|.++.++|.+.|++. ...--|+|.+|++
T Consensus 47 ~~r~eAv~lgq~Ll~~g~I~-hv~~~~~F~d~~~ 79 (83)
T cd04449 47 DTREEAVELGQELMNEGLIE-HVSGRHPFLDGFY 79 (83)
T ss_pred CCHHHHHHHHHHHHHCCCEE-ecCCCCCccCCCE
Confidence 34579999999999999985 5555788888863
No 404
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=23.39 E-value=1.5e+02 Score=22.72 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHhcCCC-HHHHHHHhh----ccCCCChhHHHHHHHHHHcc
Q 043686 29 IDPLTFAAVLHACSTAGM-VEEGWLCFN----RIRSPKVTHHALMVSVLARA 75 (282)
Q Consensus 29 p~~~ty~~ll~a~~~~g~-~~~a~~l~~----~g~~p~~~~~~~li~~~~~~ 75 (282)
.|..+|.+++++.+++.- ---+..+|. .+.+++..-|..||.+.-+.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 345567777777776655 344555555 45667777777777765543
No 405
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=22.48 E-value=1.8e+02 Score=23.71 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=30.0
Q ss_pred ccCCCChhHHHHHHHHHHccC-ChHHHHHHHHhcCCCCCHH---HHHHHHHHHHhc
Q 043686 56 RIRSPKVTHHALMVSVLARAG-LFDEARIFIQEYHMERYPE---VLRALLEGCRIH 107 (282)
Q Consensus 56 ~g~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~p~~~---~~~~li~~~~~~ 107 (282)
--+.||..|.-.+=....-.+ +.|+-.++|++=- ++|.. -|.+||..++++
T Consensus 139 p~FVvD~Yt~R~l~rlg~i~~k~ydeik~~fe~~l-~~~~~lyqe~HAlIv~~~K~ 193 (215)
T COG2231 139 PVFVVDKYTRRLLSRLGGIEEKKYDEIKELFEENL-PENLRLYQEFHALIVEHAKH 193 (215)
T ss_pred cccchhHHHHHHHHHhcccccccHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHH
Confidence 345566666665555555444 4777777777622 33433 467777776663
No 406
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.44 E-value=32 Score=23.42 Aligned_cols=30 Identities=17% Similarity=0.055 Sum_probs=26.8
Q ss_pred EEeeccccccchHHHHHHHHHhhcceEEee
Q 043686 234 HVTKNLRMRHICHDFAKAISKMVEGEIIIK 263 (282)
Q Consensus 234 ~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 263 (282)
.+++-+.+|.-.++|.++++-|.+||-+.+
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGEi~~ 65 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGEITP 65 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCCCCH
Confidence 579999999999999999999999987644
No 407
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=22.31 E-value=70 Score=21.73 Aligned_cols=27 Identities=11% Similarity=0.181 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHhCCCccCCCcc
Q 043686 173 SEGIFWELQSLMKKMEGDSLRPKPDFS 199 (282)
Q Consensus 173 ~~~a~~~~~~l~~~M~~~g~~pd~~t~ 199 (282)
..+.++.+++-.++++..|+.||..-+
T Consensus 7 li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 345566677888999999999998755
No 408
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=21.87 E-value=71 Score=23.65 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=21.7
Q ss_pred hcCChHHHHHHHHHhHHhCCCCCCHHHHHH
Q 043686 7 LHGQRELGLSLFSELEKKSSIEIDPLTFAA 36 (282)
Q Consensus 7 ~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ 36 (282)
-.|+..+|.++++.++. +|+.|-.+.|..
T Consensus 9 L~G~~~ra~riL~~L~~-Eg~ep~~lLw~L 37 (125)
T PF14840_consen 9 LAGDAKRALRILQGLQA-EGVEPPILLWAL 37 (125)
T ss_dssp HTT-HHHHHHHHHHHHH-TT--HHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH-CCccHHHHHHHH
Confidence 47999999999999999 999988776543
No 409
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=21.40 E-value=2.5e+02 Score=18.36 Aligned_cols=61 Identities=16% Similarity=0.094 Sum_probs=33.1
Q ss_pred CChhHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043686 60 PKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCE 122 (282)
Q Consensus 60 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 122 (282)
||..+-...+..+++.++.+-...+.+.+. .||..+=...+.++.+.|. +++...+.++..
T Consensus 12 ~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~i~~-~~~~~~L~~~l~ 72 (88)
T PF13646_consen 12 PDPQVRAEAARALGELGDPEAIPALIELLK-DEDPMVRRAAARALGRIGD-PEAIPALIKLLQ 72 (88)
T ss_dssp SSHHHHHHHHHHHHCCTHHHHHHHHHHHHT-SSSHHHHHHHHHHHHCCHH-HHTHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHc-CCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHc
Confidence 444444556666666655433333334444 6666666666666666663 445555555443
No 410
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=21.35 E-value=1.3e+02 Score=20.56 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHccCChHHHHHH
Q 043686 63 THHALMVSVLARAGLFDEARIF 84 (282)
Q Consensus 63 ~~~~~li~~~~~~g~~~~A~~l 84 (282)
.|...|+.++.++|.-+-|.++
T Consensus 64 AT~~~L~~aL~~~~~~diae~l 85 (86)
T cd08318 64 ATPETLITALNAAGLNEIAESL 85 (86)
T ss_pred ccHHHHHHHHHHcCcHHHHHhh
Confidence 3455555555555555555444
No 411
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=21.22 E-value=2.1e+02 Score=19.87 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHHHHHHHH
Q 043686 34 FAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDEARIFIQ 86 (282)
Q Consensus 34 y~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 86 (282)
.-.+-.-|-+.|..+.+++++. ..-.-...|...|+.++-.++.-.-|++++.
T Consensus 35 ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~Atv~~Lv~AL~~c~l~~lAe~l~~ 89 (90)
T cd08780 35 IDNLAYEYDREGLYEQAYQLLRRFIQSEGKKATLQRLVQALEENGLTSLAEDLLG 89 (90)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHccchHHHHHHhc
Confidence 3444456777888888888887 2222222677888888888888888887753
No 412
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=20.86 E-value=2.5e+02 Score=21.15 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=24.3
Q ss_pred cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 043686 107 HVQVKTGKRVIDQLCELKPLSAENYIMLSNWYA 139 (282)
Q Consensus 107 ~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~ 139 (282)
.-+.+.|+.+|.+.++..|++......||...-
T Consensus 89 Kle~e~Ae~vY~el~~~~P~HLpaHla~i~~lD 121 (139)
T PF12583_consen 89 KLEPENAEQVYEELLEAHPDHLPAHLAMIQNLD 121 (139)
T ss_dssp TS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHCcchHHHHHHHHHccC
Confidence 335688999999999999988777888877653
No 413
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=20.85 E-value=1.2e+02 Score=19.77 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=27.0
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCC
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAG 45 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g 45 (282)
....|+.+++.+++++... .|..|.......+..+.-+.|
T Consensus 11 al~~~d~~~~~~~~~~~l~-~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 11 ALLAGDEEEAEALLEEALA-QGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHHTT-CCHHHHHHHHHHH-CSSSTTHHHHHTHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHH
Confidence 3456777888888888887 777777776666666655444
No 414
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=20.64 E-value=3e+02 Score=19.05 Aligned_cols=37 Identities=11% Similarity=0.051 Sum_probs=16.5
Q ss_pred cCCCHHHHHHHhh-ccCCCChhHHHHHHHHHHccCChHHH
Q 043686 43 TAGMVEEGWLCFN-RIRSPKVTHHALMVSVLARAGLFDEA 81 (282)
Q Consensus 43 ~~g~~~~a~~l~~-~g~~p~~~~~~~li~~~~~~g~~~~A 81 (282)
..|+.+.|++++. .- ...-.|..+++++...|+-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~--rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV--QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc--cCCcHHHHHHHHHHHcCchhhh
Confidence 4455555555555 11 2223444555555555444433
No 415
>PF14044 NETI: NETI protein
Probab=20.64 E-value=77 Score=19.88 Aligned_cols=18 Identities=11% Similarity=0.327 Sum_probs=14.7
Q ss_pred HHHHHHHHHhCCCccCCC
Q 043686 180 LQSLMKKMEGDSLRPKPD 197 (282)
Q Consensus 180 ~~~l~~~M~~~g~~pd~~ 197 (282)
+..-+.+|++.|+.|-..
T Consensus 10 I~~CL~RM~~eGY~PvrR 27 (57)
T PF14044_consen 10 ISDCLARMKKEGYMPVRR 27 (57)
T ss_pred HHHHHHHHHHcCCCceee
Confidence 457889999999999653
No 416
>PRK02287 hypothetical protein; Provisional
Probab=20.08 E-value=4.4e+02 Score=20.77 Aligned_cols=79 Identities=16% Similarity=0.050 Sum_probs=54.4
Q ss_pred cCChHHHHHHHHHhHHhCC--CCC-----CHH---------HHHHHHHHHhcCCCHHHHHHHhh-ccCCCChhHHH-HHH
Q 043686 8 HGQRELGLSLFSELEKKSS--IEI-----DPL---------TFAAVLHACSTAGMVEEGWLCFN-RIRSPKVTHHA-LMV 69 (282)
Q Consensus 8 ~g~~~~A~~lf~~m~~~~g--~~p-----~~~---------ty~~ll~a~~~~g~~~~a~~l~~-~g~~p~~~~~~-~li 69 (282)
.+.|.++.+++..... .+ .-| |.+ |--++..++.-.|..++|.++++ ..--++-...| -++
T Consensus 69 DcSW~~~~~~~~~~~~-~~~R~LP~LvAaNPvNYGkp~kLs~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elL 147 (171)
T PRK02287 69 DCSWNEAERVFFKLLR-GHHRRLPFLVAANPVNYGKPFKLSSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPL 147 (171)
T ss_pred ECCHHHHhhhhhhccC-CCcccCccccccCCCcCCCcccccHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHH
Confidence 3556677777666542 21 122 333 44567788888999999999999 54545544445 799
Q ss_pred HHHHccCChHHHHHHHHh
Q 043686 70 SVLARAGLFDEARIFIQE 87 (282)
Q Consensus 70 ~~~~~~g~~~~A~~l~~~ 87 (282)
+.|.++.+-++..++-++
T Consensus 148 e~Y~~~~~~~ev~~~q~~ 165 (171)
T PRK02287 148 EAYARAKDSEEIVEIQKE 165 (171)
T ss_pred HHHHccCCHHHHHHHHHH
Confidence 999999998888877554
No 417
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.05 E-value=4.8e+02 Score=21.21 Aligned_cols=83 Identities=10% Similarity=0.003 Sum_probs=60.4
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHH-----HHhcCCCHHHHHHHhhccCCCC--hhHHHHHHHHHHcc
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLH-----ACSTAGMVEEGWLCFNRIRSPK--VTHHALMVSVLARA 75 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~-----a~~~~g~~~~a~~l~~~g~~p~--~~~~~~li~~~~~~ 75 (282)
..+...|++++|+.-++.-.. .|....+.+++. .....|.+++|...++.-..++ ....-.-.|.+...
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~k 172 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHc
Confidence 356778999999999987654 266667777654 4667899999999999322232 22234456889999
Q ss_pred CChHHHHHHHHhcC
Q 043686 76 GLFDEARIFIQEYH 89 (282)
Q Consensus 76 g~~~~A~~l~~~m~ 89 (282)
|+-++|+.-|.+-.
T Consensus 173 g~k~~Ar~ay~kAl 186 (207)
T COG2976 173 GDKQEARAAYEKAL 186 (207)
T ss_pred CchHHHHHHHHHHH
Confidence 99999999998743
Done!