Query 043686
Match_columns 282
No_of_seqs 215 out of 2472
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 12:29:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 3.2E-34 1.1E-38 262.7 16.3 174 1-209 32-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 4.5E-31 1.5E-35 241.9 10.4 197 12-277 7-222 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 6.1E-22 2.1E-26 188.8 8.7 122 31-153 127-261 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.8 1.5E-21 5E-26 186.2 9.6 123 62-217 127-257 (1134)
5 2xpi_A Anaphase-promoting comp 99.8 8.5E-23 2.9E-27 189.7 -0.6 269 1-279 90-421 (597)
6 2xpi_A Anaphase-promoting comp 99.8 3.2E-21 1.1E-25 179.1 7.1 251 2-258 312-579 (597)
7 1w3b_A UDP-N-acetylglucosamine 99.6 1.8E-16 6.1E-21 139.6 1.9 247 3-258 75-334 (388)
8 1w3b_A UDP-N-acetylglucosamine 99.6 1.1E-15 3.8E-20 134.6 4.9 248 2-258 108-368 (388)
9 2y4t_A DNAJ homolog subfamily 99.5 1.8E-14 6.1E-19 128.9 8.5 249 2-258 33-324 (450)
10 2y4t_A DNAJ homolog subfamily 99.5 1.7E-14 5.8E-19 129.0 6.3 249 2-258 67-358 (450)
11 3hym_B Cell division cycle pro 99.4 9.1E-13 3.1E-17 112.3 7.9 255 3-259 30-300 (330)
12 3mkr_A Coatomer subunit epsilo 99.3 2.6E-11 8.8E-16 103.2 14.1 143 4-149 74-221 (291)
13 3vtx_A MAMA; tetratricopeptide 99.3 6.7E-11 2.3E-15 92.8 14.5 147 3-152 13-165 (184)
14 3ieg_A DNAJ homolog subfamily 99.3 6.2E-12 2.1E-16 108.1 8.6 144 5-151 47-211 (359)
15 2ho1_A Type 4 fimbrial biogene 99.3 3.4E-11 1.2E-15 99.0 12.5 180 3-188 45-236 (252)
16 3uq3_A Heat shock protein STI1 99.3 7E-12 2.4E-16 102.9 8.0 180 3-185 13-235 (258)
17 3as5_A MAMA; tetratricopeptide 99.3 2.1E-10 7.2E-15 89.0 15.5 146 3-150 16-166 (186)
18 4eqf_A PEX5-related protein; a 99.2 1.9E-11 6.5E-16 106.3 9.3 203 3-213 73-298 (365)
19 4eqf_A PEX5-related protein; a 99.2 1E-10 3.6E-15 101.6 14.0 180 3-185 107-309 (365)
20 2pl2_A Hypothetical conserved 99.2 8.1E-11 2.8E-15 95.5 12.3 170 4-177 14-205 (217)
21 2gw1_A Mitochondrial precursor 99.2 1.4E-11 4.8E-16 111.5 8.6 82 4-88 15-99 (514)
22 4gyw_A UDP-N-acetylglucosamine 99.2 1.2E-10 4.2E-15 110.8 15.1 145 3-150 17-167 (723)
23 2q7f_A YRRB protein; TPR, prot 99.2 3.4E-10 1.2E-14 92.1 15.9 181 3-189 31-221 (243)
24 2vq2_A PILW, putative fimbrial 99.2 4.2E-10 1.4E-14 90.2 16.1 147 3-151 16-170 (225)
25 2ho1_A Type 4 fimbrial biogene 99.2 4.4E-10 1.5E-14 92.3 16.3 149 3-153 79-234 (252)
26 2q7f_A YRRB protein; TPR, prot 99.2 3.4E-11 1.2E-15 98.1 8.6 149 3-153 65-218 (243)
27 1b89_A Protein (clathrin heavy 99.2 4.5E-14 1.5E-18 125.4 -9.8 220 7-257 15-235 (449)
28 3fp2_A TPR repeat-containing p 99.2 2E-10 6.8E-15 104.6 13.8 146 4-152 252-402 (537)
29 3mkr_A Coatomer subunit epsilo 99.2 3.6E-10 1.2E-14 96.1 14.2 138 3-147 109-253 (291)
30 1fch_A Peroxisomal targeting s 99.2 2.2E-10 7.4E-15 99.3 12.9 146 4-152 190-354 (368)
31 1fch_A Peroxisomal targeting s 99.2 7.8E-10 2.7E-14 95.8 16.1 181 3-185 72-313 (368)
32 3ieg_A DNAJ homolog subfamily 99.2 3.1E-11 1.1E-15 103.7 7.1 180 3-188 11-215 (359)
33 2gw1_A Mitochondrial precursor 99.2 1.9E-10 6.5E-15 104.0 12.6 146 3-151 245-395 (514)
34 2pl2_A Hypothetical conserved 99.2 3.5E-10 1.2E-14 91.7 12.8 157 28-188 2-178 (217)
35 2vq2_A PILW, putative fimbrial 99.2 1.2E-09 4E-14 87.6 15.8 145 3-149 50-203 (225)
36 1b89_A Protein (clathrin heavy 99.2 6.4E-12 2.2E-16 111.7 2.1 166 2-188 68-234 (449)
37 3uq3_A Heat shock protein STI1 99.2 4.8E-10 1.6E-14 91.9 13.1 150 3-153 46-232 (258)
38 3hym_B Cell division cycle pro 99.1 8.5E-10 2.9E-14 93.7 14.1 185 3-196 98-303 (330)
39 3cv0_A Peroxisome targeting si 99.1 1.2E-09 4.1E-14 92.7 13.5 147 5-153 148-311 (327)
40 2fo7_A Synthetic consensus TPR 99.1 3.2E-09 1.1E-13 77.5 13.4 122 3-126 9-135 (136)
41 3cv0_A Peroxisome targeting si 99.1 8.6E-10 3E-14 93.6 11.4 180 3-188 63-267 (327)
42 4abn_A Tetratricopeptide repea 99.0 1.2E-09 4E-14 99.2 11.5 145 4-151 111-281 (474)
43 4i17_A Hypothetical protein; T 99.0 5.2E-09 1.8E-13 84.8 14.3 145 4-149 16-176 (228)
44 2fo7_A Synthetic consensus TPR 99.0 5.6E-09 1.9E-13 76.2 12.8 119 33-151 3-126 (136)
45 4abn_A Tetratricopeptide repea 99.0 1.6E-09 5.3E-14 98.5 11.5 148 3-153 145-317 (474)
46 4ga2_A E3 SUMO-protein ligase 99.0 1.3E-09 4.5E-14 83.1 8.2 137 4-143 6-149 (150)
47 2h6f_A Protein farnesyltransfe 99.0 6.7E-09 2.3E-13 91.7 12.9 142 4-148 106-255 (382)
48 1xnf_A Lipoprotein NLPI; TPR, 99.0 1.1E-08 3.9E-13 84.5 13.6 145 5-151 15-167 (275)
49 3u4t_A TPR repeat-containing p 98.9 4.6E-09 1.6E-13 87.0 10.7 147 3-153 11-167 (272)
50 1xnf_A Lipoprotein NLPI; TPR, 98.9 1.3E-08 4.5E-13 84.1 13.3 185 3-196 51-248 (275)
51 3vtx_A MAMA; tetratricopeptide 98.9 2.8E-09 9.5E-14 83.4 8.4 155 30-188 4-168 (184)
52 3u4t_A TPR repeat-containing p 98.9 5.3E-08 1.8E-12 80.5 15.3 144 3-147 45-198 (272)
53 2ond_A Cleavage stimulation fa 98.9 3.2E-08 1.1E-12 84.4 14.0 145 7-153 69-228 (308)
54 3fp2_A TPR repeat-containing p 98.9 1.5E-08 5E-13 92.2 12.4 242 9-259 216-492 (537)
55 3qou_A Protein YBBN; thioredox 98.9 4.7E-08 1.6E-12 82.6 14.2 143 4-149 126-276 (287)
56 4gyw_A UDP-N-acetylglucosamine 98.9 1.5E-08 5E-13 96.6 11.9 156 28-183 5-171 (723)
57 3qky_A Outer membrane assembly 98.8 3.5E-08 1.2E-12 81.7 12.7 146 4-152 24-219 (261)
58 3nf1_A KLC 1, kinesin light ch 98.8 8.1E-09 2.8E-13 86.8 8.7 150 3-153 35-220 (311)
59 3as5_A MAMA; tetratricopeptide 98.8 1E-07 3.5E-12 73.5 14.1 118 32-149 9-131 (186)
60 2vsy_A XCC0866; transferase, g 98.8 3.6E-08 1.2E-12 91.2 13.4 139 8-149 2-149 (568)
61 1na0_A Designed protein CTPR3; 98.8 1.6E-07 5.4E-12 67.5 13.8 112 31-142 9-125 (125)
62 3edt_B KLC 2, kinesin light ch 98.8 2E-08 6.8E-13 83.0 9.7 120 3-123 51-198 (283)
63 3nf1_A KLC 1, kinesin light ch 98.8 9.2E-09 3.1E-13 86.5 7.5 119 3-122 77-223 (311)
64 3gyz_A Chaperone protein IPGC; 98.8 4.3E-08 1.5E-12 74.9 10.0 116 33-153 11-129 (151)
65 2r5s_A Uncharacterized protein 98.8 5.4E-08 1.8E-12 75.8 10.8 146 3-151 14-167 (176)
66 2ond_A Cleavage stimulation fa 98.8 7.1E-08 2.4E-12 82.2 12.4 146 3-151 107-264 (308)
67 4ga2_A E3 SUMO-protein ligase 98.8 2.1E-08 7E-13 76.4 7.7 109 41-149 7-120 (150)
68 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.5E-07 8.5E-12 73.7 14.2 122 32-153 7-146 (213)
69 3edt_B KLC 2, kinesin light ch 98.7 2.4E-08 8.1E-13 82.6 8.0 147 5-151 11-192 (283)
70 4i17_A Hypothetical protein; T 98.7 3.4E-07 1.1E-11 74.0 14.6 124 29-152 5-141 (228)
71 4gco_A Protein STI-1; structur 98.7 1.6E-07 5.4E-12 69.3 11.3 110 27-136 8-123 (126)
72 2vyi_A SGTA protein; chaperone 98.7 3.5E-07 1.2E-11 66.2 13.1 115 30-144 11-130 (131)
73 2h6f_A Protein farnesyltransfe 98.7 7.4E-08 2.5E-12 85.0 10.8 142 4-148 140-296 (382)
74 3ro2_A PINS homolog, G-protein 98.7 1.8E-09 6.2E-14 91.4 0.2 251 4-257 14-331 (338)
75 2lni_A Stress-induced-phosphop 98.7 4E-07 1.4E-11 66.3 12.9 116 28-143 13-133 (133)
76 4a1s_A PINS, partner of inscut 98.7 1.1E-09 3.8E-14 96.4 -1.5 251 4-257 57-371 (411)
77 2yhc_A BAMD, UPF0169 lipoprote 98.7 2.9E-07 1E-11 74.6 12.9 149 3-152 12-208 (225)
78 1qqe_A Vesicular transport pro 98.7 1E-07 3.5E-12 80.6 10.0 151 3-153 45-224 (292)
79 3sf4_A G-protein-signaling mod 98.7 6.5E-09 2.2E-13 90.8 2.4 251 4-257 18-335 (406)
80 1hh8_A P67PHOX, NCF-2, neutrop 98.7 3.2E-07 1.1E-11 73.0 12.2 119 4-127 15-154 (213)
81 4gco_A Protein STI-1; structur 98.6 1.7E-07 5.7E-12 69.1 9.1 96 58-153 8-106 (126)
82 2pzi_A Probable serine/threoni 98.6 1E-07 3.5E-12 90.4 9.6 148 6-154 402-560 (681)
83 1a17_A Serine/threonine protei 98.6 1E-06 3.4E-11 66.9 13.3 119 32-150 14-139 (166)
84 1ouv_A Conserved hypothetical 98.6 1.4E-06 4.6E-11 72.4 14.1 177 4-191 15-216 (273)
85 1p5q_A FKBP52, FK506-binding p 98.6 3.5E-07 1.2E-11 79.1 10.5 137 10-149 128-285 (336)
86 3urz_A Uncharacterized protein 98.5 6.5E-07 2.2E-11 71.7 11.1 78 66-143 58-137 (208)
87 2e2e_A Formate-dependent nitri 98.5 5.1E-07 1.7E-11 69.9 10.1 134 4-140 19-160 (177)
88 2ooe_A Cleavage stimulation fa 98.5 8E-07 2.7E-11 81.4 13.0 144 8-153 292-450 (530)
89 2vgx_A Chaperone SYCD; alterna 98.5 2.5E-07 8.7E-12 70.1 7.8 88 62-149 21-110 (148)
90 2ooe_A Cleavage stimulation fa 98.5 1.9E-06 6.4E-11 78.9 14.6 144 3-149 329-484 (530)
91 2dba_A Smooth muscle cell asso 98.5 3.2E-06 1.1E-10 62.7 13.5 110 29-138 26-143 (148)
92 1elw_A TPR1-domain of HOP; HOP 98.5 2.9E-06 9.9E-11 60.0 12.4 108 30-137 3-115 (118)
93 1na0_A Designed protein CTPR3; 98.5 1.3E-06 4.4E-11 62.5 10.5 91 62-152 9-101 (125)
94 3u3w_A Transcriptional activat 98.5 3.3E-06 1.1E-10 71.1 14.5 148 2-149 82-258 (293)
95 2vgx_A Chaperone SYCD; alterna 98.5 3.6E-07 1.2E-11 69.2 7.6 113 17-132 9-127 (148)
96 1ouv_A Conserved hypothetical 98.5 7.3E-06 2.5E-10 67.9 16.2 178 4-191 47-252 (273)
97 2pzi_A Probable serine/threoni 98.5 1.3E-07 4.6E-12 89.5 6.0 137 3-143 441-583 (681)
98 3mv2_B Coatomer subunit epsilo 98.5 2E-06 6.7E-11 73.2 12.6 137 14-153 85-236 (310)
99 3urz_A Uncharacterized protein 98.5 4.1E-07 1.4E-11 72.9 7.9 146 4-153 13-182 (208)
100 3mv2_B Coatomer subunit epsilo 98.5 1.5E-06 5.3E-11 73.8 11.7 121 59-180 97-234 (310)
101 1qqe_A Vesicular transport pro 98.4 3.7E-07 1.3E-11 77.1 7.7 151 3-153 85-265 (292)
102 3ulq_A Response regulator aspa 98.4 8.8E-07 3E-11 77.4 10.1 148 4-152 112-288 (383)
103 2qfc_A PLCR protein; TPR, HTH, 98.4 6.2E-06 2.1E-10 69.4 15.0 144 3-147 83-255 (293)
104 3sz7_A HSC70 cochaperone (SGT) 98.4 1.5E-06 5.2E-11 66.5 10.1 115 30-144 10-131 (164)
105 3gyz_A Chaperone protein IPGC; 98.4 1E-06 3.4E-11 67.2 8.9 101 27-127 31-137 (151)
106 2xcb_A PCRH, regulatory protei 98.4 1.3E-06 4.6E-11 65.3 9.4 102 33-134 20-126 (142)
107 2xcb_A PCRH, regulatory protei 98.4 1.5E-06 5E-11 65.1 9.3 98 56-153 11-111 (142)
108 2vsy_A XCC0866; transferase, g 98.4 3.5E-06 1.2E-10 77.8 13.7 129 3-134 31-168 (568)
109 3q49_B STIP1 homology and U bo 98.4 3.1E-06 1.1E-10 62.2 10.9 113 29-141 7-129 (137)
110 3upv_A Heat shock protein STI1 98.4 3.8E-06 1.3E-10 61.1 11.1 107 32-138 5-122 (126)
111 3sz7_A HSC70 cochaperone (SGT) 98.4 3.1E-06 1.1E-10 64.7 11.0 93 61-153 10-104 (164)
112 3qou_A Protein YBBN; thioredox 98.4 4E-06 1.4E-10 70.6 12.6 125 29-153 114-244 (287)
113 3upv_A Heat shock protein STI1 98.4 2.7E-06 9.3E-11 61.9 9.8 91 62-152 4-96 (126)
114 4g1t_A Interferon-induced prot 98.4 1E-06 3.4E-11 78.9 8.8 250 4-259 60-364 (472)
115 2fbn_A 70 kDa peptidylprolyl i 98.4 6.2E-06 2.1E-10 65.1 12.3 141 6-148 15-176 (198)
116 3q15_A PSP28, response regulat 98.3 6.2E-06 2.1E-10 72.0 13.2 147 5-152 111-285 (378)
117 2lni_A Stress-induced-phosphop 98.3 4.6E-06 1.6E-10 60.5 10.6 92 61-152 15-108 (133)
118 3qky_A Outer membrane assembly 98.3 5E-06 1.7E-10 68.6 12.0 146 3-149 60-253 (261)
119 3q49_B STIP1 homology and U bo 98.3 5.8E-06 2E-10 60.7 11.2 91 61-151 8-100 (137)
120 1elw_A TPR1-domain of HOP; HOP 98.3 5.5E-06 1.9E-10 58.5 10.4 93 61-153 3-97 (118)
121 2l6j_A TPR repeat-containing p 98.3 2.6E-06 8.8E-11 60.1 8.5 96 60-155 2-105 (111)
122 2kck_A TPR repeat; tetratricop 98.3 3.8E-06 1.3E-10 58.9 9.2 88 62-149 6-98 (112)
123 1hxi_A PEX5, peroxisome target 98.3 3.1E-06 1E-10 61.7 8.8 88 64-151 19-108 (121)
124 3gw4_A Uncharacterized protein 98.3 6E-06 2E-10 64.8 11.1 145 5-151 2-170 (203)
125 2e2e_A Formate-dependent nitri 98.3 1.6E-06 5.6E-11 67.0 7.6 110 42-151 21-138 (177)
126 3sf4_A G-protein-signaling mod 98.3 1.5E-06 5.2E-11 75.6 8.2 147 3-149 55-248 (406)
127 1elr_A TPR2A-domain of HOP; HO 98.3 4.8E-06 1.7E-10 60.0 9.6 111 31-142 4-126 (131)
128 1a17_A Serine/threonine protei 98.3 1.2E-05 4E-10 60.8 12.1 117 3-121 21-144 (166)
129 2ifu_A Gamma-SNAP; membrane fu 98.3 1E-06 3.5E-11 75.0 6.4 150 3-153 44-220 (307)
130 1wao_1 Serine/threonine protei 98.3 3E-06 1E-10 76.9 9.8 112 41-152 16-134 (477)
131 2dba_A Smooth muscle cell asso 98.3 1E-05 3.5E-10 59.9 11.2 93 61-153 27-124 (148)
132 2kck_A TPR repeat; tetratricop 98.3 5.3E-06 1.8E-10 58.1 9.1 96 32-127 7-110 (112)
133 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 4.3E-06 1.5E-10 75.4 10.3 119 31-149 268-406 (457)
134 2vyi_A SGTA protein; chaperone 98.2 9.1E-06 3.1E-10 58.4 10.2 92 61-152 11-104 (131)
135 3rjv_A Putative SEL1 repeat pr 98.2 5.5E-05 1.9E-09 60.5 15.7 141 4-150 27-190 (212)
136 3k9i_A BH0479 protein; putativ 98.2 1.9E-06 6.4E-11 62.2 6.3 88 44-131 3-98 (117)
137 2r5s_A Uncharacterized protein 98.2 1.3E-05 4.4E-10 62.1 11.0 118 34-151 9-131 (176)
138 1p5q_A FKBP52, FK506-binding p 98.2 6.2E-06 2.1E-10 71.2 9.8 116 3-121 155-292 (336)
139 4a1s_A PINS, partner of inscut 98.2 1.5E-06 5.1E-11 76.2 5.9 189 3-191 94-337 (411)
140 4f3v_A ESX-1 secretion system 98.2 1.3E-05 4.3E-10 67.3 11.2 129 3-135 110-248 (282)
141 3ro2_A PINS homolog, G-protein 98.2 1.9E-06 6.6E-11 72.5 6.4 187 3-189 51-295 (338)
142 2xev_A YBGF; tetratricopeptide 98.2 2.8E-05 9.7E-10 56.2 11.7 98 37-134 8-116 (129)
143 4gcn_A Protein STI-1; structur 98.2 5.4E-06 1.9E-10 60.9 7.7 89 62-150 8-105 (127)
144 1ihg_A Cyclophilin 40; ppiase 98.2 1.4E-05 4.8E-10 70.0 11.6 118 32-149 224-362 (370)
145 3rkv_A Putative peptidylprolyl 98.2 1.2E-05 4E-10 61.3 9.5 115 32-146 12-150 (162)
146 4gcn_A Protein STI-1; structur 98.1 1E-05 3.4E-10 59.4 8.6 101 32-133 9-121 (127)
147 3ulq_A Response regulator aspa 98.1 5.3E-06 1.8E-10 72.4 8.1 58 64-121 226-291 (383)
148 1hz4_A MALT regulatory protein 98.1 7.5E-05 2.6E-09 64.6 14.5 148 4-152 23-198 (373)
149 3q15_A PSP28, response regulat 98.1 5.3E-06 1.8E-10 72.4 7.2 150 3-152 149-327 (378)
150 1elr_A TPR2A-domain of HOP; HO 98.1 1.5E-05 5.1E-10 57.4 8.5 92 62-153 4-104 (131)
151 1xi4_A Clathrin heavy chain; a 98.1 1.2E-05 4E-10 80.3 9.8 127 4-149 1114-1242(1630)
152 1hxi_A PEX5, peroxisome target 98.1 1.2E-05 4.2E-10 58.4 7.6 94 34-127 20-118 (121)
153 2fbn_A 70 kDa peptidylprolyl i 98.1 5.9E-06 2E-10 65.2 6.2 117 37-153 10-147 (198)
154 1na3_A Designed protein CTPR2; 98.1 4.9E-05 1.7E-09 51.2 10.1 81 62-142 9-91 (91)
155 2c2l_A CHIP, carboxy terminus 98.1 1.4E-05 4.7E-10 67.1 8.7 94 32-125 5-103 (281)
156 1wao_1 Serine/threonine protei 98.0 6.5E-06 2.2E-10 74.6 6.9 113 3-118 14-134 (477)
157 2ifu_A Gamma-SNAP; membrane fu 98.0 2.1E-05 7.3E-10 66.7 9.5 146 7-153 3-180 (307)
158 3k9i_A BH0479 protein; putativ 98.0 5.2E-06 1.8E-10 59.8 4.4 78 74-151 2-84 (117)
159 3rkv_A Putative peptidylprolyl 98.0 2.6E-05 9E-10 59.3 8.4 92 62-153 11-122 (162)
160 2if4_A ATFKBP42; FKBP-like, al 98.0 1.5E-05 5.2E-10 68.8 7.7 132 4-151 188-322 (338)
161 2c2l_A CHIP, carboxy terminus 98.0 3.7E-05 1.2E-09 64.5 9.9 93 61-153 3-97 (281)
162 2xev_A YBGF; tetratricopeptide 98.0 2.9E-05 9.8E-10 56.2 8.1 89 65-153 5-101 (129)
163 2yhc_A BAMD, UPF0169 lipoprote 97.9 3.5E-05 1.2E-09 62.1 8.7 123 3-128 49-218 (225)
164 2hr2_A Hypothetical protein; a 97.9 3.3E-05 1.1E-09 59.0 7.9 88 64-151 13-125 (159)
165 1xi4_A Clathrin heavy chain; a 97.9 0.00014 4.8E-09 72.7 14.2 159 2-177 1141-1300(1630)
166 2if4_A ATFKBP42; FKBP-like, al 97.9 1.9E-05 6.5E-10 68.2 7.3 90 64-153 181-289 (338)
167 3ro3_A PINS homolog, G-protein 97.9 2.4E-05 8.3E-10 58.3 7.0 119 32-150 10-151 (164)
168 4g1t_A Interferon-induced prot 97.9 0.00013 4.4E-09 65.0 12.6 121 29-149 49-196 (472)
169 2hr2_A Hypothetical protein; a 97.9 3.1E-05 1.1E-09 59.2 7.1 98 34-131 14-139 (159)
170 1hz4_A MALT regulatory protein 97.9 0.00033 1.1E-08 60.5 14.4 145 4-149 144-314 (373)
171 3n71_A Histone lysine methyltr 97.8 0.00015 5.1E-09 65.9 11.6 114 41-154 319-461 (490)
172 3ro3_A PINS homolog, G-protein 97.8 5.1E-05 1.7E-09 56.5 7.2 120 3-123 17-158 (164)
173 3n71_A Histone lysine methyltr 97.8 5.9E-05 2E-09 68.5 8.6 78 72-149 319-414 (490)
174 2qfc_A PLCR protein; TPR, HTH, 97.8 0.00019 6.6E-09 60.1 10.9 117 4-121 124-264 (293)
175 3rjv_A Putative SEL1 repeat pr 97.7 0.00024 8.2E-09 56.7 10.4 124 12-140 3-137 (212)
176 2xm6_A Protein corresponding t 97.7 0.00094 3.2E-08 60.2 15.3 136 8-149 92-244 (490)
177 4b4t_Q 26S proteasome regulato 97.7 0.00016 5.6E-09 63.6 10.0 182 4-186 13-245 (434)
178 3u3w_A Transcriptional activat 97.7 0.00027 9.1E-09 59.2 10.7 113 37-149 81-217 (293)
179 2xm6_A Protein corresponding t 97.7 0.0012 4E-08 59.5 15.2 174 8-191 56-253 (490)
180 4f3v_A ESX-1 secretion system 97.7 0.00046 1.6E-08 57.8 11.5 118 37-154 108-234 (282)
181 2kat_A Uncharacterized protein 97.6 0.00017 5.7E-09 51.3 7.2 56 94-149 19-74 (115)
182 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00014 4.7E-09 65.5 8.1 116 3-121 276-413 (457)
183 3gw4_A Uncharacterized protein 97.6 0.0002 6.8E-09 55.8 8.1 110 42-151 3-130 (203)
184 1zu2_A Mitochondrial import re 97.6 4.5E-05 1.5E-09 58.2 3.9 91 46-137 17-133 (158)
185 2kat_A Uncharacterized protein 97.5 0.00027 9.4E-09 50.1 7.4 93 50-142 4-103 (115)
186 3ma5_A Tetratricopeptide repea 97.5 0.00037 1.2E-08 48.4 7.4 62 62-123 7-70 (100)
187 3qww_A SET and MYND domain-con 97.5 0.00039 1.3E-08 62.1 8.7 88 43-130 310-423 (433)
188 4b4t_Q 26S proteasome regulato 97.4 0.0016 5.5E-08 57.1 12.5 148 2-149 62-237 (434)
189 4e6h_A MRNA 3'-END-processing 97.4 0.00078 2.7E-08 63.6 10.1 179 5-190 353-570 (679)
190 2kc7_A BFR218_protein; tetratr 97.3 0.0014 4.6E-08 44.9 8.6 64 68-131 6-72 (99)
191 3ma5_A Tetratricopeptide repea 97.3 0.00081 2.8E-08 46.6 7.4 56 94-149 7-62 (100)
192 3qwp_A SET and MYND domain-con 97.3 0.0017 5.9E-08 57.9 11.3 95 37-131 293-413 (429)
193 3e4b_A ALGK; tetratricopeptide 97.3 0.003 1E-07 56.5 12.7 134 10-149 194-343 (452)
194 1ihg_A Cyclophilin 40; ppiase 97.3 0.00073 2.5E-08 59.0 8.3 90 63-152 224-331 (370)
195 2l6j_A TPR repeat-containing p 97.1 0.0013 4.4E-08 45.7 6.9 90 29-118 2-102 (111)
196 3e4b_A ALGK; tetratricopeptide 97.1 0.005 1.7E-07 55.0 12.0 150 33-191 178-352 (452)
197 1klx_A Cysteine rich protein B 97.1 0.0049 1.7E-07 45.5 10.0 117 2-124 2-127 (138)
198 3qww_A SET and MYND domain-con 97.0 0.0011 3.8E-08 59.2 6.6 78 74-151 310-405 (433)
199 1zu2_A Mitochondrial import re 97.0 0.00057 2E-08 52.0 3.9 71 73-143 13-95 (158)
200 3qwp_A SET and MYND domain-con 97.0 0.0017 5.8E-08 57.9 7.5 84 68-151 293-394 (429)
201 1na3_A Designed protein CTPR2; 96.9 0.0032 1.1E-07 41.9 6.7 58 94-151 9-66 (91)
202 4e6h_A MRNA 3'-END-processing 96.8 0.012 4.1E-07 55.5 12.3 130 6-138 445-584 (679)
203 3dra_A Protein farnesyltransfe 96.8 0.058 2E-06 45.6 15.1 133 8-143 46-195 (306)
204 3dra_A Protein farnesyltransfe 96.6 0.059 2E-06 45.5 14.2 135 10-147 84-239 (306)
205 1dce_A Protein (RAB geranylger 96.4 0.035 1.2E-06 51.2 12.0 133 11-146 89-244 (567)
206 3ly7_A Transcriptional activat 96.3 0.034 1.2E-06 48.2 11.0 118 11-132 215-347 (372)
207 3bee_A Putative YFRE protein; 96.3 0.031 1.1E-06 38.2 8.8 79 60-139 4-87 (93)
208 2v5f_A Prolyl 4-hydroxylase su 96.3 0.041 1.4E-06 38.2 9.7 74 61-134 4-86 (104)
209 3dss_A Geranylgeranyl transfer 96.3 0.084 2.9E-06 45.1 13.1 133 6-141 40-192 (331)
210 3q7a_A Farnesyltransferase alp 96.2 0.1 3.5E-06 44.9 13.4 134 7-143 66-216 (349)
211 1dce_A Protein (RAB geranylger 96.2 0.036 1.2E-06 51.1 11.0 129 10-141 44-191 (567)
212 2kc7_A BFR218_protein; tetratr 95.9 0.019 6.3E-07 38.9 5.9 54 100-153 6-60 (99)
213 3q7a_A Farnesyltransferase alp 95.8 0.22 7.4E-06 42.9 13.7 135 7-144 100-258 (349)
214 1klx_A Cysteine rich protein B 95.7 0.023 7.9E-07 41.7 6.3 98 45-149 9-118 (138)
215 3bee_A Putative YFRE protein; 95.6 0.058 2E-06 36.8 7.7 61 92-152 4-67 (93)
216 2uy1_A Cleavage stimulation fa 95.4 0.039 1.3E-06 50.0 7.7 90 63-154 287-380 (493)
217 3dss_A Geranylgeranyl transfer 95.3 0.3 1E-05 41.6 12.5 128 11-141 90-240 (331)
218 3mkq_A Coatomer beta'-subunit; 95.2 0.011 3.8E-07 56.2 3.5 97 7-121 611-708 (814)
219 1pc2_A Mitochondria fission pr 95.1 0.11 3.9E-06 38.9 8.1 73 60-132 30-109 (152)
220 3u64_A Protein TP_0956; tetrat 94.9 0.56 1.9E-05 39.2 12.5 86 62-147 154-259 (301)
221 3ly7_A Transcriptional activat 94.8 0.12 4.3E-06 44.6 8.8 124 27-151 190-333 (372)
222 3mkq_A Coatomer beta'-subunit; 94.7 0.21 7E-06 47.4 10.9 98 41-151 662-759 (814)
223 2uy1_A Cleavage stimulation fa 94.4 0.35 1.2E-05 43.6 11.2 73 46-121 335-411 (493)
224 2v5f_A Prolyl 4-hydroxylase su 93.0 0.57 2E-05 32.1 8.1 65 29-93 3-78 (104)
225 3u64_A Protein TP_0956; tetrat 92.0 0.34 1.2E-05 40.5 6.5 79 47-125 179-271 (301)
226 1pc2_A Mitochondria fission pr 91.6 0.29 9.8E-06 36.7 5.2 84 8-93 11-103 (152)
227 4gns_B Protein CSD3, chitin bi 89.6 0.98 3.3E-05 42.9 8.0 122 35-156 252-399 (754)
228 3mkq_B Coatomer subunit alpha; 89.3 5.9 0.0002 30.3 10.8 67 42-116 16-82 (177)
229 1nzn_A CGI-135 protein, fissio 88.9 3.4 0.00011 29.7 8.7 72 60-131 33-111 (126)
230 4h7y_A Dual specificity protei 88.9 2.4 8.2E-05 31.7 8.0 109 30-138 12-138 (161)
231 1wy6_A Hypothetical protein ST 88.7 5.7 0.0002 29.2 12.6 112 6-121 18-152 (172)
232 3mkq_B Coatomer subunit alpha; 87.5 5.2 0.00018 30.6 9.5 100 6-120 16-115 (177)
233 1v54_E Cytochrome C oxidase po 87.3 2.1 7.3E-05 29.5 6.4 47 56-102 39-87 (109)
234 2ff4_A Probable regulatory pro 86.3 1.3 4.4E-05 38.6 6.2 64 33-96 173-247 (388)
235 4gns_B Protein CSD3, chitin bi 85.2 4.2 0.00014 38.6 9.4 110 8-120 261-397 (754)
236 1wy6_A Hypothetical protein ST 84.1 9.2 0.00032 28.1 8.7 77 6-88 72-151 (172)
237 2y69_E Cytochrome C oxidase su 80.0 5.8 0.0002 28.9 6.4 49 56-104 82-132 (152)
238 2ff4_A Probable regulatory pro 80.0 3.5 0.00012 35.7 6.4 93 61-153 111-230 (388)
239 3lvg_A Clathrin heavy chain 1; 77.5 0.0053 1.8E-07 55.0 -12.2 161 6-177 65-249 (624)
240 1zbp_A Hypothetical protein VP 77.5 4.6 0.00016 33.2 5.9 57 71-127 6-64 (273)
241 1v54_E Cytochrome C oxidase po 76.9 16 0.00053 25.2 7.9 46 90-136 41-87 (109)
242 4fhn_B Nucleoporin NUP120; pro 75.0 30 0.001 34.5 12.2 57 97-153 902-963 (1139)
243 1nzn_A CGI-135 protein, fissio 74.0 22 0.00074 25.5 8.3 81 11-93 17-106 (126)
244 2y69_E Cytochrome C oxidase su 73.5 6.3 0.00021 28.8 5.0 57 80-137 71-131 (152)
245 3o48_A Mitochondria fission 1 69.6 24 0.00084 25.5 7.5 72 57-128 35-112 (134)
246 2p58_C Putative type III secre 65.9 16 0.00056 25.1 5.5 48 70-120 48-95 (116)
247 3ffl_A Anaphase-promoting comp 62.4 17 0.00059 27.4 5.7 90 67-156 25-150 (167)
248 4b4t_R RPN7, 26S proteasome re 61.6 14 0.00046 32.5 5.9 60 63-122 132-196 (429)
249 2nsz_A Programmed cell death p 61.3 41 0.0014 23.9 8.4 57 64-121 9-70 (129)
250 1y8m_A FIS1; mitochondria, unk 61.2 45 0.0016 24.4 8.1 70 59-128 36-111 (144)
251 2ion_A PDCD4, programmed cell 59.7 36 0.0012 25.0 7.1 57 64-121 11-72 (152)
252 1zbp_A Hypothetical protein VP 55.7 48 0.0016 27.1 7.7 65 39-103 5-77 (273)
253 4h7y_A Dual specificity protei 54.5 64 0.0022 24.0 7.5 91 59-152 9-118 (161)
254 3ffl_A Anaphase-promoting comp 54.1 67 0.0023 24.1 8.4 97 25-121 12-149 (167)
255 4fhn_B Nucleoporin NUP120; pro 53.9 1.4E+02 0.0047 29.8 12.2 139 4-149 821-992 (1139)
256 4b4t_P 26S proteasome regulato 53.3 1.2E+02 0.0039 26.6 12.3 84 66-149 141-239 (445)
257 2uwj_G Type III export protein 52.3 54 0.0019 22.5 6.9 47 71-120 48-94 (115)
258 2ko4_A Mediator of RNA polymer 50.0 13 0.00045 24.0 2.7 38 83-120 24-62 (81)
259 1k1a_A B-cell lymphoma 3-encod 46.7 24 0.00081 27.2 4.6 86 2-88 13-102 (241)
260 3lpz_A GET4 (YOR164C homolog); 45.8 1.4E+02 0.0046 25.2 12.6 112 33-147 37-186 (336)
261 4b4t_P 26S proteasome regulato 45.6 1.3E+02 0.0044 26.3 9.6 86 3-88 145-244 (445)
262 3txn_A 26S proteasome regulato 45.1 1.5E+02 0.0051 25.5 12.9 145 3-149 27-202 (394)
263 4b4t_R RPN7, 26S proteasome re 44.3 1.2E+02 0.0039 26.4 9.1 82 4-88 140-234 (429)
264 2uwj_G Type III export protein 43.5 77 0.0026 21.7 8.2 73 10-89 21-95 (115)
265 3txn_A 26S proteasome regulato 42.7 1.1E+02 0.0036 26.5 8.3 87 2-88 106-207 (394)
266 1qsa_A Protein (soluble lytic 41.0 1.6E+02 0.0054 27.2 9.7 137 5-146 16-154 (618)
267 2p58_C Putative type III secre 38.2 96 0.0033 21.3 8.7 73 10-89 22-96 (116)
268 2dod_A Transcription elongatio 38.0 32 0.0011 22.5 3.3 36 10-46 15-50 (82)
269 2wpv_A GET4, UPF0363 protein Y 37.0 1.8E+02 0.0062 24.1 9.6 85 33-117 35-157 (312)
270 3esl_A Checkpoint serine/threo 35.8 1.5E+02 0.0052 22.9 7.6 102 79-192 61-168 (202)
271 2b7e_A PRE-mRNA processing pro 35.4 28 0.00096 21.2 2.5 33 11-44 2-35 (59)
272 2zu6_B Programmed cell death p 33.8 1.8E+02 0.006 24.1 8.1 56 65-121 169-229 (307)
273 1uzc_A Hypothetical protein FL 33.7 38 0.0013 21.4 3.0 36 10-46 13-48 (71)
274 3eiq_C Programmed cell death p 31.3 2.2E+02 0.0075 24.2 8.4 57 64-121 219-280 (358)
275 4a1g_A Mitotic checkpoint seri 31.1 50 0.0017 24.4 3.8 38 50-87 84-126 (152)
276 2l0z_A Glycoprotein G2; zinc-b 30.5 17 0.00059 20.1 0.8 10 272-281 20-29 (42)
277 2d2s_A Exocyst complex compone 30.4 2E+02 0.0069 22.7 7.7 30 92-121 89-118 (235)
278 1qsa_A Protein (soluble lytic 29.9 3.3E+02 0.011 25.0 10.9 110 10-121 229-346 (618)
279 3ph0_C ASCG; type III secretio 29.7 54 0.0018 19.7 3.0 11 104-114 50-60 (61)
280 2etb_A Transient receptor pote 29.5 10 0.00035 30.0 -0.3 84 3-87 7-112 (256)
281 2yru_A Steroid receptor RNA ac 29.2 46 0.0016 23.4 3.1 38 17-55 48-85 (118)
282 4gq2_M Nucleoporin NUP120; bet 28.6 4.1E+02 0.014 25.7 12.7 105 37-142 816-950 (950)
283 1bd8_A P19INK4D CDK4/6 inhibit 28.5 32 0.0011 24.4 2.4 113 3-119 7-123 (156)
284 3ygs_P Procaspase 9; apoptosis 27.5 80 0.0027 21.0 4.1 38 76-114 51-88 (97)
285 2pk8_A Uncharacterized protein 27.4 38 0.0013 22.7 2.2 30 171-200 13-42 (103)
286 2qx5_A Nucleoporin NIC96; mRNA 27.3 1.6E+02 0.0056 27.3 7.4 16 105-120 549-564 (661)
287 3kea_A K1L; tropism, ANK repea 27.3 72 0.0025 25.5 4.6 139 4-149 37-179 (285)
288 3kae_A CDC27, possible protein 25.8 2.2E+02 0.0076 21.7 12.4 121 4-125 71-239 (242)
289 3o48_A Mitochondria fission 1 25.5 78 0.0027 22.8 3.8 66 28-93 37-110 (134)
290 4b4t_S RPN3, 26S proteasome re 24.4 2.3E+02 0.0079 25.5 7.5 66 62-127 231-303 (523)
291 3hra_A Ankyrin repeat family p 24.0 42 0.0014 24.9 2.4 81 5-87 12-94 (201)
292 3l6a_A Eukaryotic translation 23.6 2.3E+02 0.008 24.0 7.2 25 65-89 15-39 (364)
293 3aji_A 26S proteasome non-ATPa 23.4 73 0.0025 24.1 3.8 113 2-117 10-126 (231)
294 2nsz_A Programmed cell death p 23.4 1.7E+02 0.0058 20.5 5.4 41 34-75 10-54 (129)
295 3v30_A DNA-binding protein rfx 23.2 60 0.002 23.4 3.1 83 3-87 7-91 (172)
296 1ug3_A EIF4GI, eukaryotic prot 22.0 1.9E+02 0.0066 24.1 6.4 23 67-89 16-38 (339)
297 3jxi_A Vanilloid receptor-rela 21.3 18 0.00062 28.5 -0.3 85 2-87 9-115 (260)
298 3kea_A K1L; tropism, ANK repea 20.7 1E+02 0.0036 24.5 4.4 109 6-119 7-117 (285)
299 3lvg_A Clathrin heavy chain 1; 20.3 5.4 0.00019 36.0 -3.8 134 33-177 56-190 (624)
300 1dp3_A TRAM protein; helix-loo 20.2 30 0.001 20.6 0.6 43 3-46 4-46 (55)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.2e-34 Score=262.73 Aligned_cols=174 Identities=12% Similarity=0.094 Sum_probs=162.6
Q ss_pred ChhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCC---------HHHHHHHhh----ccCCCChhHHHH
Q 043686 1 MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGM---------VEEGWLCFN----RIRSPKVTHHAL 67 (282)
Q Consensus 1 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~---------~~~a~~l~~----~g~~p~~~~~~~ 67 (282)
+|++|++.|++++|+++|++|.+ .|++||.+|||+||++|++.+. +++|.++|+ .|+.||.+|||+
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~ 110 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTN 110 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 37899999999999999999999 9999999999999999998765 788999998 999999999999
Q ss_pred HHHHHHccCChHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH--hcCCCChhHHHHHHHHHHHcC
Q 043686 68 MVSVLARAGLFDEARIFIQEYH---MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC--ELKPLSAENYIMLSNWYAAEA 142 (282)
Q Consensus 68 li~~~~~~g~~~~A~~l~~~m~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~p~~~~~~~~Li~~y~~~g 142 (282)
||++|++.|++++|.++|++|. +.||++|||+||.+|++.|++++|.++|++|. ++.| +..||++||++|++.|
T Consensus 111 lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g 189 (501)
T 4g26_A 111 GARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP-EEPELAALLKVSMDTK 189 (501)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCC
Confidence 9999999999999999999997 89999999999999999999999999999999 6788 6699999999999999
Q ss_pred chhhhhcccceeeecCeEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhh
Q 043686 143 KWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKW 209 (282)
Q Consensus 143 ~~~~A~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~ 209 (282)
++++| . ++|++|++.|..|+..|+..++..++..
T Consensus 190 ~~d~A-----------------------------~----~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 190 NADKV-----------------------------Y----KTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp CHHHH-----------------------------H----HHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CHHHH-----------------------------H----HHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 97666 4 8999999999999999998888776654
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=4.5e-31 Score=241.88 Aligned_cols=197 Identities=13% Similarity=0.075 Sum_probs=157.1
Q ss_pred HHHHHHHHHhHHhCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHhh----ccCCCChhHHHHHHHHHHccCC---------
Q 043686 12 ELGLSLFSELEKKSSIEIDP-LTFAAVLHACSTAGMVEEGWLCFN----RIRSPKVTHHALMVSVLARAGL--------- 77 (282)
Q Consensus 12 ~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~----~g~~p~~~~~~~li~~~~~~g~--------- 77 (282)
..+..+++++++ .+..+.+ ..++.+|++|++.|++++|.++|+ .|+.||.+|||+||.+|++.+.
T Consensus 7 s~~e~L~~~~~~-k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 7 SPSENLSRKAKK-KAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred chHHHHHHHHHH-hcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 456777788887 8776654 468999999999999999999999 9999999999999999998765
Q ss_pred hHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH--hcCCCChhHHHHHHHHHHHcCchhhhhcccc
Q 043686 78 FDEARIFIQEYH---MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC--ELKPLSAENYIMLSNWYAAEAKWDVVNQAYS 152 (282)
Q Consensus 78 ~~~A~~l~~~m~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~ 152 (282)
+++|.++|++|. +.||.+|||+||.+|++.|++++|.++|++|. ++.| +..|||+||.+|++.|++++|
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A----- 159 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKA----- 159 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHH-----
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHH-----
Confidence 689999999997 89999999999999999999999999999999 5778 679999999999999986665
Q ss_pred eeeecCeEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhhhhhhhhHHHHHHhhhccCCCCCe
Q 043686 153 WIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGHSEILALSFGLISTQVGAT 232 (282)
Q Consensus 153 ~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (282)
. ++|++|.+.|+.||..||..++.
T Consensus 160 ------------------------~----~l~~~M~~~G~~Pd~~ty~~Li~---------------------------- 183 (501)
T 4g26_A 160 ------------------------Y----EVDAHMVESEVVPEEPELAALLK---------------------------- 183 (501)
T ss_dssp ------------------------H----HHHHHHHHTTCCCCHHHHHHHHH----------------------------
T ss_pred ------------------------H----HHHHHHHhcCCCCCHHHHHHHHH----------------------------
Confidence 4 89999999999999999866554
Q ss_pred EEEeeccccccchHHHHHHHHHhhcceEEeecCCccccccCCccC
Q 043686 233 IHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCS 277 (282)
Q Consensus 233 ~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 277 (282)
+|++.|+.++|.++|++|.+.+.. ++..+|+.+++.+|+
T Consensus 184 -----~~~~~g~~d~A~~ll~~Mr~~g~~-ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 184 -----VSMDTKNADKVYKTLQRLRDLVRQ-VSKSTFDMIEEWFKS 222 (501)
T ss_dssp -----HHHHTTCHHHHHHHHHHHHHHTSS-BCHHHHHHHHHHHHS
T ss_pred -----HHhhCCCHHHHHHHHHHHHHhCCC-cCHHHHHHHHHHHhc
Confidence 566667777888888888877654 577777777776665
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.85 E-value=6.1e-22 Score=188.80 Aligned_cols=122 Identities=15% Similarity=0.046 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHhh-------ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC---CCCCHHHHHHH
Q 043686 31 PLTFAAVLHACSTAGMVEEGWLCFN-------RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH---MERYPEVLRAL 100 (282)
Q Consensus 31 ~~ty~~ll~a~~~~g~~~~a~~l~~-------~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~p~~~~~~~l 100 (282)
..|||+||++||+.|++++|.++|+ .|+.||++|||+||++||+.|++++|.++|++|. +.||++|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4699999999999999999999995 5899999999999999999999999999999997 89999999999
Q ss_pred HHHHHhcCCh-hHHHHHHHHHH--hcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686 101 LEGCRIHVQV-KTGKRVIDQLC--ELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 101 i~~~~~~g~~-~~A~~~~~~m~--~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
|.++|+.|+. ++|.++|++|. |+.| |..+|+++++.+.+.+-++...++...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~P-D~vtY~~ll~~~eR~~vL~~Vrkv~P~ 261 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKL-QALFTAVLLSEEDRATVLKAVHKVKPT 261 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCS-HHHHHHSCCCHHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCC-ChhhcccccChhhHHHHHHHHHHhCcc
Confidence 9999999985 78999999999 6888 569999999999999888877775443
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.85 E-value=1.5e-21 Score=186.18 Aligned_cols=123 Identities=13% Similarity=0.051 Sum_probs=109.4
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH--hcCCCChhHHHH
Q 043686 62 VTHHALMVSVLARAGLFDEARIFIQEYH------MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC--ELKPLSAENYIM 133 (282)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~p~~~~~~~~ 133 (282)
..|||+||++|||+|++++|.++|++|. +.||++|||+||.|||+.|++++|.++|++|. |+.| |++|||+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHH
Confidence 5689999999999999999999998763 78999999999999999999999999999999 6888 7799999
Q ss_pred HHHHHHHcCchhhhhcccceeeecCeEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhhhhhh
Q 043686 134 LSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIG 213 (282)
Q Consensus 134 Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~~~ 213 (282)
||++||+.|+..+ +|. ++|++|.+.|+.||..||..+++++.+...+.
T Consensus 206 LI~glcK~G~~~e----------------------------~A~----~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~ 253 (1134)
T 3spa_A 206 ALQCMGRQDQDAG----------------------------TIE----RCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253 (1134)
T ss_dssp HHHHHHHHTCCHH----------------------------HHH----HHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHhCCCcHH----------------------------HHH----HHHHHHHHcCCCCChhhcccccChhhHHHHHH
Confidence 9999999987422 234 89999999999999999999999999987775
Q ss_pred hhHH
Q 043686 214 HSEI 217 (282)
Q Consensus 214 ~~~~ 217 (282)
...+
T Consensus 254 ~Vrk 257 (1134)
T 3spa_A 254 AVHK 257 (1134)
T ss_dssp HHGG
T ss_pred HHHH
Confidence 3333
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.84 E-value=8.5e-23 Score=189.69 Aligned_cols=269 Identities=9% Similarity=-0.078 Sum_probs=194.6
Q ss_pred ChhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCCh
Q 043686 1 MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLF 78 (282)
Q Consensus 1 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~ 78 (282)
++.+|.+.|++++|+.+|++|.. ..||..++..+..+|.+.|++++|..+|+ ....++..+++.++.+|.+.|++
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 166 (597)
T 2xpi_A 90 WRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDW 166 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhH
Confidence 36789999999999999999986 56899999999999999999999999999 55788999999999999999999
Q ss_pred HHHHHHHHhc-CC-----------------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHH------
Q 043686 79 DEARIFIQEY-HM-----------------ERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIML------ 134 (282)
Q Consensus 79 ~~A~~l~~~m-~~-----------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~L------ 134 (282)
++|.++|+++ +. .+++.+|+.++.+|.+.|++++|.++|++|.+..|++...+..+
T Consensus 167 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 246 (597)
T 2xpi_A 167 QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLL 246 (597)
T ss_dssp HHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcc
Confidence 9999999964 31 12589999999999999999999999999999999776665544
Q ss_pred --------------------------------HHHHHHcCchhhhhcccceeee--cCeE--EEEecCCCCCCChHHHHH
Q 043686 135 --------------------------------SNWYAAEAKWDVVNQAYSWIEF--RNKV--HVFGTGDVSCPRSEGIFW 178 (282)
Q Consensus 135 --------------------------------i~~y~~~g~~~~A~~~~~~~~~--~~~~--~~~i~~~~~~~~~~~a~~ 178 (282)
+.+|.+.|++++|.+.++.+.. .+.. +.+...+.+.|+.++|.
T Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~- 325 (597)
T 2xpi_A 247 TADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVL- 325 (597)
T ss_dssp CHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHH-
T ss_pred cchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHH-
Confidence 5567788999999987776544 2222 56677788899999988
Q ss_pred HHHHHHHHHHhCCCccCCCcccccchhhhhhhhhhhhHH-HHHHhhhccCCCCCeEEEeeccccccchHHHHHHHHHhhc
Q 043686 179 ELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGHSEI-LALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVE 257 (282)
Q Consensus 179 ~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~ 257 (282)
.+|++|.+.+ ..+..++..++..+.+.+....+.. +.......+........+...|.++|++++|.++|+++.+
T Consensus 326 ---~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 326 ---AITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp ---HHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8888887654 1244555555555555555542221 1111122222111111245667777777777777777765
Q ss_pred ceEEeecCCccccccCCccCCC
Q 043686 258 GEIIIKDPSCFHHFEYGFCSCR 279 (282)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~ 279 (282)
.+ +.+...|+.+..++++.|
T Consensus 402 ~~--~~~~~~~~~l~~~~~~~g 421 (597)
T 2xpi_A 402 MD--PQFGPAWIGFAHSFAIEG 421 (597)
T ss_dssp HC--TTCHHHHHHHHHHHHHHT
T ss_pred hC--CCCHHHHHHHHHHHHHcC
Confidence 32 123334444444444443
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.83 E-value=3.2e-21 Score=179.10 Aligned_cols=251 Identities=10% Similarity=-0.017 Sum_probs=171.2
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCCh
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLF 78 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~ 78 (282)
+.+|.+.|++++|+++|++|.+ .+ +.+..+++.++.++.+.|+.++|.++|+ ....| +..+|+.++.+|.+.|++
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILE-ID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHH-cC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccH
Confidence 3455666666666666666654 32 1244556666666666666666666666 22333 577888888888888999
Q ss_pred HHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeee
Q 043686 79 DEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEF 156 (282)
Q Consensus 79 ~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~ 156 (282)
++|.++|+++. ..| +..+|+.++.+|.+.|++++|.++|++|.+..|++..+|+.++.+|.+.|++++|.+.+..+..
T Consensus 390 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99988888865 344 4788888888999999999999999888888888888888888999999999888886665432
Q ss_pred cC---e--EEEEecCCCCCCChHHHHHHHHHHHHHHHhC----CCccC--CCcccccchhhhhhhhhhh-hHHHHHHhhh
Q 043686 157 RN---K--VHVFGTGDVSCPRSEGIFWELQSLMKKMEGD----SLRPK--PDFSLHYVDEERKWTQIGH-SEILALSFGL 224 (282)
Q Consensus 157 ~~---~--~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~----g~~pd--~~t~~~~~~~~~~~~~~~~-~~~l~~~~~~ 224 (282)
.. . .+.+...+.+.|+.++|. .+|++|.+. +..|+ ..++..+...+.+.+.... ...+.....+
T Consensus 470 ~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 470 LFQYDPLLLNELGVVAFNKSDMQTAI----NHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HCCCCHHHHHHHHHHHHHTTCHHHHH----HHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHH----HHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 11 1 145666677888888888 555555443 77787 4566677777777766652 2222233333
Q ss_pred ccCCCCCeEEEeeccccccchHHHHHHHHHhhcc
Q 043686 225 ISTQVGATIHVTKNLRMRHICHDFAKAISKMVEG 258 (282)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~ 258 (282)
.+........+...|.+.|+.++|.++|+++.+.
T Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3322222223566777889999999999888764
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.59 E-value=1.8e-16 Score=139.63 Aligned_cols=247 Identities=13% Similarity=0.062 Sum_probs=140.5
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCCh
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLF 78 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~ 78 (282)
..|.+.|++++|++.|+++.+ +.|+. .+|..+..++.+.|++++|.+.|+ ....|+ ...+..+...|.+.|++
T Consensus 75 ~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 151 (388)
T 1w3b_A 75 NVYKERGQLQEAIEHYRHALR---LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRL 151 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCH
T ss_pred HHHHHCCCHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCH
Confidence 356667777777777777665 33543 356667777777777777777776 444554 34455666666777777
Q ss_pred HHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeee
Q 043686 79 DEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEF 156 (282)
Q Consensus 79 ~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~ 156 (282)
++|.+.|+++. ..|+ ..+|+.+...|.+.|++++|.+.|+++.+..|++...|..+...|...|++++|...+.....
T Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 231 (388)
T 1w3b_A 152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777777654 3444 667777777777777777777777777777776666777777777777777777664332111
Q ss_pred ----cCeE-EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCC-Ccccccchhhhhhhhhh-hhHHHHHHhhhccCCC
Q 043686 157 ----RNKV-HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKP-DFSLHYVDEERKWTQIG-HSEILALSFGLISTQV 229 (282)
Q Consensus 157 ----~~~~-~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~-~t~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 229 (282)
...+ ..+...+...|+.++|. ..|+++.+. .|+. .++..+...+.+.+... ....+.....+.+...
T Consensus 232 ~~p~~~~~~~~l~~~~~~~g~~~~A~----~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 305 (388)
T 1w3b_A 232 LSPNHAVVHGNLACVYYEQGLIDLAI----DTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305 (388)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHH----HHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH
T ss_pred hCcCCHHHHHHHHHHHHHcCCHHHHH----HHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH
Confidence 0000 22334455667777776 666666543 3443 22333333334444433 1111222222222211
Q ss_pred CCeEEEeeccccccchHHHHHHHHHhhcc
Q 043686 230 GATIHVTKNLRMRHICHDFAKAISKMVEG 258 (282)
Q Consensus 230 ~~~~~~~~~~~~~g~~~~a~~~~~~m~~~ 258 (282)
.....+...+...|+.+.|.++++++...
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 306 DSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 11112344455667777777777766553
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.57 E-value=1.1e-15 Score=134.56 Aligned_cols=248 Identities=10% Similarity=-0.008 Sum_probs=179.7
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCCCHH-HHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCC
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPL-TFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGL 77 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~-ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~ 77 (282)
..+|.+.|++++|++.|.++.+ ..|+.. .+..+-..+...|++++|.+.|+ ....|+ ..+|+.+...|.+.|+
T Consensus 108 ~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 184 (388)
T 1w3b_A 108 AAALVAAGDMEGAVQAYVSALQ---YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184 (388)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHH---HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3568889999999999999887 456654 45556667888899999999998 445564 7889999999999999
Q ss_pred hHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceee
Q 043686 78 FDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIE 155 (282)
Q Consensus 78 ~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~ 155 (282)
+++|.+.|+++. ..|+ ...|..+...+...|++++|...|++..+..|+++.++..+...|.+.|++++|...+....
T Consensus 185 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 264 (388)
T 1w3b_A 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999875 5565 78899999999999999999999999999999888999999999999999999998665533
Q ss_pred ecCe-----EEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCC-Ccccccchhhhhhhhhh-hhHHHHHHhhhccCC
Q 043686 156 FRNK-----VHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKP-DFSLHYVDEERKWTQIG-HSEILALSFGLISTQ 228 (282)
Q Consensus 156 ~~~~-----~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~-~t~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~ 228 (282)
..+. ...+...+.+.|+.++|. ..|+++.+. .|+. .++..+...+.+.+... ....+.....+.+..
T Consensus 265 ~~~p~~~~~~~~l~~~~~~~g~~~~A~----~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 338 (388)
T 1w3b_A 265 ELQPHFPDAYCNLANALKEKGSVAEAE----DCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338 (388)
T ss_dssp HTCSSCHHHHHHHHHHHHHHSCHHHHH----HHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC
T ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHH----HHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 2111 133444566778888887 667766654 3443 34444444444444444 222222222332222
Q ss_pred CCCeEEEeeccccccchHHHHHHHHHhhcc
Q 043686 229 VGATIHVTKNLRMRHICHDFAKAISKMVEG 258 (282)
Q Consensus 229 ~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~ 258 (282)
......+...+.+.|+.++|.+.|+++.+.
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 211223456677999999999999998764
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.52 E-value=1.8e-14 Score=128.85 Aligned_cols=249 Identities=10% Similarity=-0.044 Sum_probs=176.5
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCCh
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLF 78 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~ 78 (282)
...|.+.|++++|+++|+++.+ . .+.+..+|..+..++.+.|++++|...|+ ....| +...+..+...|.+.|++
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~-~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 110 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVD-G-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKL 110 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH-h-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 3568899999999999999987 3 23467889999999999999999999999 44455 477899999999999999
Q ss_pred HHHHHHHHhcC-CCCC-H---HHHHHHHHH------------HHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 043686 79 DEARIFIQEYH-MERY-P---EVLRALLEG------------CRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAE 141 (282)
Q Consensus 79 ~~A~~l~~~m~-~~p~-~---~~~~~li~~------------~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~ 141 (282)
++|.+.|+++. ..|+ . .+|..++.. |.+.|++++|.+.|+++.+..|.++.++..+..+|.+.
T Consensus 111 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (450)
T 2y4t_A 111 DEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKE 190 (450)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHC
Confidence 99999999975 5676 4 677776544 89999999999999999999999989999999999999
Q ss_pred Cchhhhhcccceeeec---Ce--EEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCccccc-------------c
Q 043686 142 AKWDVVNQAYSWIEFR---NK--VHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHY-------------V 203 (282)
Q Consensus 142 g~~~~A~~~~~~~~~~---~~--~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~-------------~ 203 (282)
|++++|...+...... +. ...+...+...|+.++|. ..|+++.+ ..|+....... .
T Consensus 191 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~ 264 (450)
T 2y4t_A 191 GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL----SEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESA 264 (450)
T ss_dssp TCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHH----HHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH----HHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999866554321 11 134455567788899988 67776663 45665443221 2
Q ss_pred hhhhhhhhhh-hhHHHHHHhhhccCCCC----CeEEEeeccccccchHHHHHHHHHhhcc
Q 043686 204 DEERKWTQIG-HSEILALSFGLISTQVG----ATIHVTKNLRMRHICHDFAKAISKMVEG 258 (282)
Q Consensus 204 ~~~~~~~~~~-~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~a~~~~~~m~~~ 258 (282)
..+.+.+... ....+.....+.+..+. ....+...+.+.|+.+.|.++++++...
T Consensus 265 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 265 EELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2333333333 11112222222222110 1112345566778888888888776543
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.50 E-value=1.7e-14 Score=128.98 Aligned_cols=249 Identities=10% Similarity=-0.005 Sum_probs=180.7
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-h---hHHHHHHHH----
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-V---THHALMVSV---- 71 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~---~~~~~li~~---- 71 (282)
..+|.+.|++++|+..|+++.+ .+ +.+..++..+..++.+.|++++|.+.|+ ....|+ . ..+..++..
T Consensus 67 ~~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 144 (450)
T 2y4t_A 67 ATVFLAMGKSKAALPDLTKVIQ-LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ 144 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHh-cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH
Confidence 3568899999999999999987 43 2346788999999999999999999999 556675 3 566666444
Q ss_pred --------HHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 043686 72 --------LARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAE 141 (282)
Q Consensus 72 --------~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~ 141 (282)
|.+.|++++|.+.|+++. ..| +..+|..+...|.+.|++++|.+.|+++.+..|+++.+|..+...|.+.
T Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 224 (450)
T 2y4t_A 145 RLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL 224 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 899999999999999975 344 6889999999999999999999999999999998999999999999999
Q ss_pred CchhhhhcccceeeecCeE-----EEE------------ecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCC-----cc
Q 043686 142 AKWDVVNQAYSWIEFRNKV-----HVF------------GTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPD-----FS 199 (282)
Q Consensus 142 g~~~~A~~~~~~~~~~~~~-----~~~------------i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~-----t~ 199 (282)
|++++|...+..+.....- ..+ ...+...|+.++|. .+|+++.+ ..|+.. .+
T Consensus 225 g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~----~~~~~~l~--~~p~~~~~~~~~~ 298 (450)
T 2y4t_A 225 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT----SKYESVMK--TEPSIAEYTVRSK 298 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH----HHHHHHHH--HCCSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH----HHHHHHHh--cCCcchHHHHHHH
Confidence 9999999866554221110 111 34456678888887 77777765 345532 22
Q ss_pred cccchhhhhhhhhh-hhHHHHHHhhhccCCCCCeEEEeeccccccchHHHHHHHHHhhcc
Q 043686 200 LHYVDEERKWTQIG-HSEILALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEG 258 (282)
Q Consensus 200 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~ 258 (282)
..+...+.+.+... ....+.....+.+........+...+...|+.+.|.+.+++..+.
T Consensus 299 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 299 ERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 33334444444443 122222222333222222222455677899999999999998764
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.37 E-value=9.1e-13 Score=112.32 Aligned_cols=255 Identities=8% Similarity=-0.044 Sum_probs=178.0
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccC-Ch
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAG-LF 78 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g-~~ 78 (282)
..+...|++++|+++|+++.+ .. +.+...+..+...+...|+.++|..+++ ....| +...|..+...|...| ++
T Consensus 30 ~~~~~~g~~~~A~~~~~~~l~-~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 107 (330)
T 3hym_B 30 ERHYYNCDFKMCYKLTSVVME-KD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKN 107 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCH
T ss_pred HHHHHcCCHHHHHHHHHHHHH-cC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhH
Confidence 456778999999999999877 32 2233456667788889999999999998 44455 5778899999999999 99
Q ss_pred HHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeee
Q 043686 79 DEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEF 156 (282)
Q Consensus 79 ~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~ 156 (282)
++|.+.|++.. ..|+ ..+|..+...|...|++++|.+.|+++.+..|++..++..+...|...|++++|...+.....
T Consensus 108 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 108 EHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999854 5554 788999999999999999999999999999998888899999999999999999985544322
Q ss_pred cCe----E-EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCc---cCC-Ccccccchhhhhhhhhh-hhHHHHHHhhhcc
Q 043686 157 RNK----V-HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLR---PKP-DFSLHYVDEERKWTQIG-HSEILALSFGLIS 226 (282)
Q Consensus 157 ~~~----~-~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~---pd~-~t~~~~~~~~~~~~~~~-~~~~l~~~~~~~~ 226 (282)
... . ..+...+...|+.++|...+++.++.....+-. |+. .++..+...+.+.+... ....+.....+.+
T Consensus 188 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 267 (330)
T 3hym_B 188 IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP 267 (330)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc
Confidence 111 1 233444567888999985555555444333322 222 23333333444444443 2222223333333
Q ss_pred CCCCCeEEEeeccccccchHHHHHHHHHhhcce
Q 043686 227 TQVGATIHVTKNLRMRHICHDFAKAISKMVEGE 259 (282)
Q Consensus 227 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~ 259 (282)
........+...+.+.|+.+.|.+++++..+.+
T Consensus 268 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 268 QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 322222224555668999999999999887653
No 12
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.32 E-value=2.6e-11 Score=103.19 Aligned_cols=143 Identities=10% Similarity=0.097 Sum_probs=80.2
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHH-HHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAA-VLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEAR 82 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~-ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 82 (282)
.|.+.|+.++|++.|+++.. .+..|+..++.. +-.++.+.|++++|.+.++. .++...+..++..|.+.|++++|.
T Consensus 74 ~~~~~~~~~~A~~~l~~ll~-~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 74 YLASHSRRDAIVAELDREMS-RSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp HHHCSTTHHHHHHHHHHHHH-SCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCCcHHHHHHHHHHHHh-cccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44555666666666666655 544454433333 33456666666666666664 234556666666666666666666
Q ss_pred HHHHhcC-CCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 83 IFIQEYH-MERYPEVL---RALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 83 ~l~~~m~-~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
+.|+++. ..|+.... .+++..+...|++++|..+|+++.+..|+++..++.+..+|.+.|++++|..
T Consensus 151 ~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~ 221 (291)
T 3mkr_A 151 KELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEG 221 (291)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666654 34442111 1122223334666666666666666666666666666666666666666644
No 13
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.30 E-value=6.7e-11 Score=92.79 Aligned_cols=147 Identities=10% Similarity=0.024 Sum_probs=127.4
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCCh
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLF 78 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~ 78 (282)
..|.+.|++++|++.|++..+ +.| +..++..+-..+.+.|++++|...+. ....| +...+..+...+...+++
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (184)
T 3vtx_A 13 DKKRTKGDFDGAIRAYKKVLK---ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEK 89 (184)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCH
Confidence 357789999999999999887 445 45678888889999999999999999 44555 467788888999999999
Q ss_pred HHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccc
Q 043686 79 DEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYS 152 (282)
Q Consensus 79 ~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~ 152 (282)
+.|.+.+.+.. ..| +..+|..+...|.+.|++++|.+.|++..++.|.++.+|..+...|.+.|++++|...+.
T Consensus 90 ~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 165 (184)
T 3vtx_A 90 QAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFK 165 (184)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999854 455 488999999999999999999999999999999999999999999999999999876443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.29 E-value=6.2e-12 Score=108.14 Aligned_cols=144 Identities=11% Similarity=0.056 Sum_probs=78.4
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC---C-hhHHHHH---------
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP---K-VTHHALM--------- 68 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p---~-~~~~~~l--------- 68 (282)
|.+.|++++|+..|++..+ . .| +...|..+...+.+.|++++|...|+ ....| + ...+..+
T Consensus 47 ~~~~~~~~~A~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (359)
T 3ieg_A 47 FLAMGKSKAALPDLTKVIA-L--KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRL 123 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH-h--CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHH
Confidence 4445555555555555544 1 23 33445555555555555555555555 33334 2 2233333
Q ss_pred ---HHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCc
Q 043686 69 ---VSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAK 143 (282)
Q Consensus 69 ---i~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~ 143 (282)
...+...|++++|.+.|++.. ..| +..+|..+...|.+.|++++|.+.++++....|.++.++..+...|...|+
T Consensus 124 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 124 RSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 345555555555555555543 222 355566666666666666666666666666666666666666666666666
Q ss_pred hhhhhccc
Q 043686 144 WDVVNQAY 151 (282)
Q Consensus 144 ~~~A~~~~ 151 (282)
+++|...+
T Consensus 204 ~~~A~~~~ 211 (359)
T 3ieg_A 204 HELSLSEV 211 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666533
No 15
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.28 E-value=3.4e-11 Score=99.02 Aligned_cols=180 Identities=11% Similarity=-0.027 Sum_probs=142.0
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD 79 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~ 79 (282)
..|...|++++|++.|++..+ .. +.+...+..+...+...|++++|.+.++ ....| +...+..+...|.+.|+++
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 122 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALE-ID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYE 122 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCChHHHHHHHHHHHh-cC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHH
Confidence 457789999999999999887 32 2367788889999999999999999999 34445 5788999999999999999
Q ss_pred HHHHHHHhcC---CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceee
Q 043686 80 EARIFIQEYH---MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIE 155 (282)
Q Consensus 80 ~A~~l~~~m~---~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~ 155 (282)
+|.+.|++.. ..|+ ...|..+...|.+.|++++|.+.|+++....|.+..++..+...|.+.|++++|...+....
T Consensus 123 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 202 (252)
T 2ho1_A 123 EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFA 202 (252)
T ss_dssp HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999864 3464 77899999999999999999999999999999888999999999999999999988554432
Q ss_pred ecCeE-----EEEecCCCCCCChHHHHHHHHHHHHHHH
Q 043686 156 FRNKV-----HVFGTGDVSCPRSEGIFWELQSLMKKME 188 (282)
Q Consensus 156 ~~~~~-----~~~i~~~~~~~~~~~a~~~~~~l~~~M~ 188 (282)
..... ..+...+...|+.++|. ..++++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~g~~~~A~----~~~~~~~ 236 (252)
T 2ho1_A 203 QGGGQNARSLLLGIRLAKVFEDRDTAA----SYGLQLK 236 (252)
T ss_dssp TTSCCCHHHHHHHHHHHHHTTCHHHHH----HHHHHHH
T ss_pred HhCcCcHHHHHHHHHHHHHccCHHHHH----HHHHHHH
Confidence 21110 12222334566666666 4444444
No 16
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.28 E-value=7e-12 Score=102.95 Aligned_cols=180 Identities=10% Similarity=-0.014 Sum_probs=137.9
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC--------hhHHHHHHHHH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK--------VTHHALMVSVL 72 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~--------~~~~~~li~~~ 72 (282)
..|.+.|++++|++.|++..+ .. ++...|..+..++...|++++|.+.++ ..+.|+ ..+|..+...|
T Consensus 13 ~~~~~~~~~~~A~~~~~~a~~-~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (258)
T 3uq3_A 13 NKFYKARQFDEAIEHYNKAWE-LH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY 89 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH-hh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence 357789999999999999988 66 888899999999999999999999999 333332 57889999999
Q ss_pred HccCChHHHHHHHHhcC---------------------------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 043686 73 ARAGLFDEARIFIQEYH---------------------------MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELK 124 (282)
Q Consensus 73 ~~~g~~~~A~~l~~~m~---------------------------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 124 (282)
.+.|++++|.+.|++.. ..|+ ..+|..+...|.+.|++++|.+.|++..+..
T Consensus 90 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 169 (258)
T 3uq3_A 90 HKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 99999999999998853 2333 5678888888999999999999999999989
Q ss_pred CCChhHHHHHHHHHHHcCchhhhhcccceeeecC--eE---EEEecCCCCCCChHHHHHHHHHHHH
Q 043686 125 PLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRN--KV---HVFGTGDVSCPRSEGIFWELQSLMK 185 (282)
Q Consensus 125 p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~--~~---~~~i~~~~~~~~~~~a~~~~~~l~~ 185 (282)
|.++.+|..+...|.+.|++++|...+....... .. ..+-..+...|+.++|...+++.++
T Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 170 PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9888889999999999999999887554322110 00 1222334456666666644433333
No 17
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=2.1e-10 Score=88.96 Aligned_cols=146 Identities=11% Similarity=0.021 Sum_probs=124.9
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD 79 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~ 79 (282)
..+.+.|++++|++.|++..+ . .+.+..++..+...+...|++++|...++ ....| +...+..+...|.+.|+++
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 93 (186)
T 3as5_A 16 ISHAKAGRYSQAVMLLEQVYD-A-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYD 93 (186)
T ss_dssp HHHHHHTCHHHHHHHHTTTCC-T-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHH-h-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH
Confidence 457788999999999999875 3 23467788888889999999999999999 33444 5778899999999999999
Q ss_pred HHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcc
Q 043686 80 EARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQA 150 (282)
Q Consensus 80 ~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~ 150 (282)
+|.+.|++.. ...+..+|..+...|.+.|++++|.+.++++....|.++.++..+...|.+.|++++|...
T Consensus 94 ~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 94 LAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999864 3446889999999999999999999999999999998889999999999999998888553
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.24 E-value=1.9e-11 Score=106.31 Aligned_cols=203 Identities=7% Similarity=-0.032 Sum_probs=133.4
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD 79 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~ 79 (282)
..+.+.|++++|+++|+++.+ .. +.+..+|..+...+.+.|++++|...|+ ....| +..+|..+...|.+.|+++
T Consensus 73 ~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 150 (365)
T 4eqf_A 73 LKRLKEGDLPVTILFMEAAIL-QD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQ 150 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH-hC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHH
Confidence 457788999999999999887 32 2366788889999999999999999998 44455 4788999999999999999
Q ss_pred HHHHHHHhcC-CCCC-----------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCchh
Q 043686 80 EARIFIQEYH-MERY-----------PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPL--SAENYIMLSNWYAAEAKWD 145 (282)
Q Consensus 80 ~A~~l~~~m~-~~p~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~--~~~~~~~Li~~y~~~g~~~ 145 (282)
+|.+.|+++. ..|+ ..+++.+...|.+.|++++|.+.|+++.+..|. ++.++..+...|.+.|+++
T Consensus 151 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~ 230 (365)
T 4eqf_A 151 DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFN 230 (365)
T ss_dssp HHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHH
Confidence 9999998864 2332 223344566777778888888888887777776 6677777778888888888
Q ss_pred hhhcccceeeecC-----eEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCC-Ccccccchhhhhhhhhh
Q 043686 146 VVNQAYSWIEFRN-----KVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKP-DFSLHYVDEERKWTQIG 213 (282)
Q Consensus 146 ~A~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~-~t~~~~~~~~~~~~~~~ 213 (282)
+|...+....... ....+...+...|+.++|. ..|++..+. .|+. .++..+...+.+.+...
T Consensus 231 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~----~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 231 RAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAV----EAYTRALEI--QPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH----HHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH----HHHHHHHhc--CCCchHHHHHHHHHHHHCCCHH
Confidence 7777444322110 1133344456677777777 555554432 3553 33444444455555544
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.24 E-value=1e-10 Score=101.61 Aligned_cols=180 Identities=7% Similarity=0.035 Sum_probs=133.6
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-----------hhHHHHH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-----------VTHHALM 68 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-----------~~~~~~l 68 (282)
..|.+.|++++|++.|++..+ . .| +..+|..+...+.+.|++++|...|+ ..+.|+ ..++..+
T Consensus 107 ~~~~~~g~~~~A~~~~~~al~-~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l 183 (365)
T 4eqf_A 107 ITQAENENEQAAIVALQRCLE-L--QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRM 183 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC--------------
T ss_pred HHHHHCCCHHHHHHHHHHHHh-c--CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHH
Confidence 568889999999999999987 3 34 47789999999999999999999999 333343 2233455
Q ss_pred HHHHHccCChHHHHHHHHhcC-CCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCch
Q 043686 69 VSVLARAGLFDEARIFIQEYH-MER---YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKW 144 (282)
Q Consensus 69 i~~~~~~g~~~~A~~l~~~m~-~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~ 144 (282)
...|.+.|++++|.+.|+++. ..| +..+|+.+...|.+.|++++|.+.|+++.+..|+++.+|+.+...|.+.|++
T Consensus 184 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS 263 (365)
T ss_dssp -----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 888999999999999999865 344 5889999999999999999999999999999998889999999999999999
Q ss_pred hhhhcccceeeec--CeE---EEEecCCCCCCChHHHHHHHHHHHH
Q 043686 145 DVVNQAYSWIEFR--NKV---HVFGTGDVSCPRSEGIFWELQSLMK 185 (282)
Q Consensus 145 ~~A~~~~~~~~~~--~~~---~~~i~~~~~~~~~~~a~~~~~~l~~ 185 (282)
++|...+...... +.. ..+...+...|+.++|...+++.++
T Consensus 264 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 264 EEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999855443211 111 3344456677889999844444443
No 20
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.24 E-value=8.1e-11 Score=95.52 Aligned_cols=170 Identities=12% Similarity=0.088 Sum_probs=123.2
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHcc----
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARA---- 75 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~---- 75 (282)
.+.+.|++++|+..|++..+ ..| +...+..+-..+.+.|++++|...++ ..+.|+ ...+..+...|.+.
T Consensus 14 ~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~ 90 (217)
T 2pl2_A 14 QLYALGRYDAALTLFERALK---ENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQA 90 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHT---TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhh
Confidence 56788999999999998876 445 45677777778888999999999988 556664 66788888888888
Q ss_pred -------CChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhh
Q 043686 76 -------GLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDV 146 (282)
Q Consensus 76 -------g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~ 146 (282)
|++++|.+.|++.. ..|+ ..+|..+-..|.+.|++++|...|++..++. +++..+..+...|...|++++
T Consensus 91 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~ 169 (217)
T 2pl2_A 91 EDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDE 169 (217)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHH
T ss_pred hhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHH
Confidence 99999999888854 5665 7788888888899999999999999888777 677888888888999999988
Q ss_pred hhcccceeeec----CeE-EEEecCCCCCCChHHHH
Q 043686 147 VNQAYSWIEFR----NKV-HVFGTGDVSCPRSEGIF 177 (282)
Q Consensus 147 A~~~~~~~~~~----~~~-~~~i~~~~~~~~~~~a~ 177 (282)
|...+...... ... ..+...+...|+.++|.
T Consensus 170 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 170 ALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence 88855442211 111 22333455667777776
No 21
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.24 E-value=1.4e-11 Score=111.49 Aligned_cols=82 Identities=10% Similarity=0.043 Sum_probs=65.3
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDE 80 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~ 80 (282)
.|.+.|++++|++.|+++.. . .||..+|..+..++.+.|++++|.+.++ ....|+ ...|..+..+|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~al~-~--~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALE-L--KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHH-H--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHh-c--CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHH
Confidence 56778888888888888887 3 3788888888888888888888888888 444554 5678888888888888888
Q ss_pred HHHHHHhc
Q 043686 81 ARIFIQEY 88 (282)
Q Consensus 81 A~~l~~~m 88 (282)
|.+.|+++
T Consensus 92 A~~~~~~~ 99 (514)
T 2gw1_A 92 AMFDLSVL 99 (514)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777654
No 22
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.24 E-value=1.2e-10 Score=110.81 Aligned_cols=145 Identities=12% Similarity=0.085 Sum_probs=132.1
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCCh
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLF 78 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~ 78 (282)
..|.+.|++++|++.|++..+ +.|+ ..+|+.+-.++.+.|++++|.+.|+ ..+.|+ ...|+.+...|.+.|++
T Consensus 17 ~~~~~~G~~~eAi~~~~kAl~---l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~ 93 (723)
T 4gyw_A 17 NIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDV 93 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 357889999999999999887 5676 5688899999999999999999999 667785 78999999999999999
Q ss_pred HHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcc
Q 043686 79 DEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQA 150 (282)
Q Consensus 79 ~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~ 150 (282)
++|.+.|++.. +.|+ ..+|+.|...|.+.|++++|.+.|++..+++|+++..|..|...|...|++++|.+.
T Consensus 94 ~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~ 167 (723)
T 4gyw_A 94 QGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER 167 (723)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHH
Confidence 99999999854 6776 889999999999999999999999999999999999999999999999999999873
No 23
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.23 E-value=3.4e-10 Score=92.09 Aligned_cols=181 Identities=13% Similarity=0.049 Sum_probs=129.8
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD 79 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~ 79 (282)
..+.+.|++++|+.+|++..+ . .+.+...+..+...+.+.|++++|...++ ....| +..++..+...|.+.|+++
T Consensus 31 ~~~~~~~~~~~A~~~~~~~l~-~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 108 (243)
T 2q7f_A 31 GRGSEFGDYEKAAEAFTKAIE-E-NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYK 108 (243)
T ss_dssp -----------CCTTHHHHHT-T-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhCHHHHHHHHHHHHH-h-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHH
Confidence 356778999999999999876 2 22356778888888889999999999998 33344 5778888889999999999
Q ss_pred HHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeec
Q 043686 80 EARIFIQEYH-M-ERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFR 157 (282)
Q Consensus 80 ~A~~l~~~m~-~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~ 157 (282)
+|.+.|++.. . ..+..+|..+...|.+.|++++|.+.++++.+..|++...+..+...|.+.|++++|...+......
T Consensus 109 ~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 109 EAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999998864 3 3457888888899999999999999999999888888888889999999999999998855443211
Q ss_pred C--eE---EEEecCCCCCCChHHHHHHHHHHHHHHHh
Q 043686 158 N--KV---HVFGTGDVSCPRSEGIFWELQSLMKKMEG 189 (282)
Q Consensus 158 ~--~~---~~~i~~~~~~~~~~~a~~~~~~l~~~M~~ 189 (282)
. .. ..+...+...|+.++|. ..+++..+
T Consensus 189 ~~~~~~~~~~la~~~~~~~~~~~A~----~~~~~~~~ 221 (243)
T 2q7f_A 189 DPGHADAFYNAGVTYAYKENREKAL----EMLDKAID 221 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCTTHHH----HHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHccCHHHHH----HHHHHHHc
Confidence 1 01 23334456678888887 55655543
No 24
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.23 E-value=4.2e-10 Score=90.21 Aligned_cols=147 Identities=7% Similarity=-0.053 Sum_probs=126.6
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHcc-CCh
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARA-GLF 78 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~-g~~ 78 (282)
..|.+.|++++|++.|++..+ .. +.+...+..+...+...|++++|.+.++ ....| +..++..+...|.+. |++
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 93 (225)
T 2vq2_A 16 MEYMRGQDYRQATASIEDALK-SD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRP 93 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHhhHHHHHHHHHHHHH-hC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcH
Confidence 467889999999999999887 32 2357788889999999999999999999 44445 577899999999999 999
Q ss_pred HHHHHHHHhcC---CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686 79 DEARIFIQEYH---MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 79 ~~A~~l~~~m~---~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
++|.+.|+++. ..|+ ..+|..+...|.+.|++++|.+.|+++.+..|.++..+..+...|.+.|++++|...+
T Consensus 94 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (225)
T 2vq2_A 94 AESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYF 170 (225)
T ss_dssp HHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999864 2344 6889999999999999999999999999999988899999999999999988885533
No 25
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.23 E-value=4.4e-10 Score=92.27 Aligned_cols=149 Identities=9% Similarity=-0.022 Sum_probs=129.8
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--cc--CCC-ChhHHHHHHHHHHccCC
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RI--RSP-KVTHHALMVSVLARAGL 77 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g--~~p-~~~~~~~li~~~~~~g~ 77 (282)
..|.+.|++++|++.|++..+ .. +.+...+..+...+...|++++|.+.++ .. ..| +...+..+...|.+.|+
T Consensus 79 ~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 156 (252)
T 2ho1_A 79 VVFQTEMEPKLADEEYRKALA-SD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK 156 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHH-HC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC
Confidence 467889999999999999887 32 2367788889999999999999999999 33 456 46788899999999999
Q ss_pred hHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686 78 FDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 78 ~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
+++|.+.|++.. ..| +..+|..+...|.+.|++++|.+.++++.+..|++...+..+...|.+.|+.++|.+.+..
T Consensus 157 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 234 (252)
T 2ho1_A 157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQ 234 (252)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999864 344 5889999999999999999999999999999998888999999999999999999875544
No 26
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.21 E-value=3.4e-11 Score=98.10 Aligned_cols=149 Identities=11% Similarity=-0.007 Sum_probs=120.4
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD 79 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~ 79 (282)
..|.+.|++++|++.|++..+ .. +.+..++..+...+...|++++|.+.++ ....| +...+..+...|.+.|+++
T Consensus 65 ~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 142 (243)
T 2q7f_A 65 NLLSSVNELERALAFYDKALE-LD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPK 142 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH-cC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHH
Confidence 457788899999999998876 32 2356778888888888999999999888 33334 5677888888899999999
Q ss_pred HHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686 80 EARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 80 ~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
+|.+.+++.. ..| +..+|..+...|.+.|++++|.+.|+++.+..|++..++..+...|.+.|++++|...+..
T Consensus 143 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 143 LALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999998854 334 5788888888899999999999999998888888888888899999999999998876654
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.20 E-value=4.5e-14 Score=125.44 Aligned_cols=220 Identities=10% Similarity=0.077 Sum_probs=65.8
Q ss_pred hcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHHH
Q 043686 7 LHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQ 86 (282)
Q Consensus 7 ~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 86 (282)
+.|++++|.++++++.. | .+|+.|..++.+.|++++|.+.|.. .||..+|..++..+.+.|++++|++.++
T Consensus 15 ~~~~ld~A~~fae~~~~-----~--~vWs~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE-----P--AVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC-----h--HHHHHHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45677888888887754 3 3788888888888888888888863 2566678888888888888888888665
Q ss_pred hcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecCeEEEEec
Q 043686 87 EYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGT 165 (282)
Q Consensus 87 ~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~i~ 165 (282)
... ..|++.+.+.|+.+|.+.|+++++.++++ .| +..+|+.+.+.|...|++++|...++.+ .....+..
T Consensus 86 ~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a---~n~~~LA~ 156 (449)
T 1b89_A 86 MARKKARESYVETELIFALAKTNRLAELEEFIN-----GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV---SNFGRLAS 156 (449)
T ss_dssp -----------------------CHHHHTTTTT-----CC-----------------CTTTHHHHHHHT---TCHHHHHH
T ss_pred HHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-----CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHh---hhHHHHHH
Confidence 543 34556778888888888888888777775 35 4468888888888888888888877655 23345566
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhhhhhhhhHHHHHHhhhccCCCCCeEEEeeccccccch
Q 043686 166 GDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGHSEILALSFGLISTQVGATIHVTKNLRMRHIC 245 (282)
Q Consensus 166 ~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~ 245 (282)
++.+.|++++|. +.+.++ .++.++...+.+|...+.+..+..... .+...+.... .++.-|.+.|..
T Consensus 157 ~L~~Lg~yq~AV----ea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l--~L~~~ad~l~-~lv~~Yek~G~~ 223 (449)
T 1b89_A 157 TLVHLGEYQAAV----DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL--HIVVHADELE-ELINYYQDRGYF 223 (449)
T ss_dssp HHHTTTCHHHHH----HHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTT--TTTTCHHHHH-HHHHHHHHTTCH
T ss_pred HHHHhccHHHHH----HHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHH--HHHhCHhhHH-HHHHHHHHCCCH
Confidence 667777788877 555555 245666666677776665543322111 1111111111 245667888888
Q ss_pred HHHHHHHHHhhc
Q 043686 246 HDFAKAISKMVE 257 (282)
Q Consensus 246 ~~a~~~~~~m~~ 257 (282)
++|.++++.-..
T Consensus 224 eEai~lLe~aL~ 235 (449)
T 1b89_A 224 EELITMLEAALG 235 (449)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC
Confidence 888888876543
No 28
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.19 E-value=2e-10 Score=104.64 Aligned_cols=146 Identities=10% Similarity=-0.035 Sum_probs=129.0
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDE 80 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~ 80 (282)
.+...|++++|++.|++..+ ..|+..+|..+...+...|++++|.+.|+ ....| +..+|..+...|.+.|++++
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESIN---LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcccHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Confidence 56778999999999999988 56888889999999999999999999999 44445 47889999999999999999
Q ss_pred HHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccc
Q 043686 81 ARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYS 152 (282)
Q Consensus 81 A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~ 152 (282)
|.+.|++.. ..|+ ..+|..+...|.+.|++++|.+.|+++.+..|+++..+..+...|.+.|++++|...+.
T Consensus 329 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 329 AKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp HHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999865 4454 78899999999999999999999999999999998999999999999999988876443
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.19 E-value=3.6e-10 Score=96.06 Aligned_cols=138 Identities=12% Similarity=0.007 Sum_probs=117.5
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHH---HHHHHHHHccCC
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHH---ALMVSVLARAGL 77 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~---~~li~~~~~~g~ 77 (282)
..|.+.|++++|++.|++ ..+...+..+...+.+.|++++|...|+ ....|+.... .+++..+...|+
T Consensus 109 ~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~ 181 (291)
T 3mkr_A 109 SIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK 181 (291)
T ss_dssp HHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchH
Confidence 467899999999999987 2677899999999999999999999999 4456764321 234555666799
Q ss_pred hHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhh
Q 043686 78 FDEARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVV 147 (282)
Q Consensus 78 ~~~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A 147 (282)
+++|..+|+++. ..++...|+.+..+|.+.|++++|.+.|++.....|+++.++..++..+...|+.+++
T Consensus 182 ~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~ea 253 (291)
T 3mkr_A 182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEV 253 (291)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHH
Confidence 999999999975 4456899999999999999999999999999999999999999999999999987654
No 30
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.18 E-value=2.2e-10 Score=99.30 Aligned_cols=146 Identities=13% Similarity=0.028 Sum_probs=127.2
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCC---CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCC
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEI---DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGL 77 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p---~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~ 77 (282)
.+.+.|++++|++.|+++.+ ..| +..++..+...+.+.|++++|...|+ ....| +..+|..+...|.+.|+
T Consensus 190 ~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 190 SLLSDSLFLEVKELFLAAVR---LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHhhcccHHHHHHHHHHHHH---hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCC
Confidence 34478999999999999987 334 47899999999999999999999999 44455 47899999999999999
Q ss_pred hHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-----------hhHHHHHHHHHHHcCch
Q 043686 78 FDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS-----------AENYIMLSNWYAAEAKW 144 (282)
Q Consensus 78 ~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~-----------~~~~~~Li~~y~~~g~~ 144 (282)
+++|.+.|++.. ..| +..+|..+...|.+.|++++|.+.|+++..+.|++ ..+|..|..+|.+.|+.
T Consensus 267 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 999999999864 455 48899999999999999999999999999877766 78999999999999999
Q ss_pred hhhhcccc
Q 043686 145 DVVNQAYS 152 (282)
Q Consensus 145 ~~A~~~~~ 152 (282)
++|.....
T Consensus 347 ~~A~~~~~ 354 (368)
T 1fch_A 347 DAYGAADA 354 (368)
T ss_dssp GGHHHHHT
T ss_pred HhHHHhHH
Confidence 99976443
No 31
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.17 E-value=7.8e-10 Score=95.76 Aligned_cols=181 Identities=9% Similarity=0.005 Sum_probs=138.3
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD 79 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~ 79 (282)
..|.+.|++++|+..|+++.+ .. +.+..++..+..++.+.|++++|.+.|+ ....| +..++..+...|.+.|+++
T Consensus 72 ~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 149 (368)
T 1fch_A 72 LRRLQEGDLPNAVLLFEAAVQ-QD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 149 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-SC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Confidence 357788888899999888877 32 2355677888888888888888888888 34445 5778888888888888888
Q ss_pred HHHHHHHhcC-C-------------------------------------------------CC---CHHHHHHHHHHHHh
Q 043686 80 EARIFIQEYH-M-------------------------------------------------ER---YPEVLRALLEGCRI 106 (282)
Q Consensus 80 ~A~~l~~~m~-~-------------------------------------------------~p---~~~~~~~li~~~~~ 106 (282)
+|.+.|+++. . .| +..+|..+...|.+
T Consensus 150 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~ 229 (368)
T 1fch_A 150 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 229 (368)
T ss_dssp HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH
Confidence 8888887632 1 22 47889999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeec--CeE---EEEecCCCCCCChHHHHHHHH
Q 043686 107 HVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFR--NKV---HVFGTGDVSCPRSEGIFWELQ 181 (282)
Q Consensus 107 ~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~--~~~---~~~i~~~~~~~~~~~a~~~~~ 181 (282)
.|++++|.+.|+++....|+++.+|..+...|.+.|++++|...+...... +.. ..+...+...|+.++|...++
T Consensus 230 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 309 (368)
T 1fch_A 230 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 309 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999899999999999999999999865543211 111 334445677889999984444
Q ss_pred HHHH
Q 043686 182 SLMK 185 (282)
Q Consensus 182 ~l~~ 185 (282)
+.+.
T Consensus 310 ~al~ 313 (368)
T 1fch_A 310 EALN 313 (368)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 32
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.17 E-value=3.1e-11 Score=103.72 Aligned_cols=180 Identities=12% Similarity=-0.043 Sum_probs=142.6
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD 79 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~ 79 (282)
..+.+.|++++|+..|++..+ .. +.+..++..+...+...|++++|...|+ ....| +...|..+...|.+.|+++
T Consensus 11 ~~~~~~g~~~~A~~~~~~~l~-~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (359)
T 3ieg_A 11 KKLLAAGQLADALSQFHAAVD-GD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLD 88 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh-hC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChH
Confidence 457889999999999999887 32 2356788888889999999999999999 55556 5788999999999999999
Q ss_pred HHHHHHHhcC-CCC---C-HHHHHHH------------HHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 043686 80 EARIFIQEYH-MER---Y-PEVLRAL------------LEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEA 142 (282)
Q Consensus 80 ~A~~l~~~m~-~~p---~-~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g 142 (282)
+|.+.|++.. ..| + ...|..+ ...+...|++++|.+.++++.+..|.++..+..+...|.+.|
T Consensus 89 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (359)
T 3ieg_A 89 EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEG 168 (359)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCC
Confidence 9999999864 677 4 5566555 578999999999999999999999999999999999999999
Q ss_pred chhhhhcccceeeecCeE-----EEEecCCCCCCChHHHHHHHHHHHHHHH
Q 043686 143 KWDVVNQAYSWIEFRNKV-----HVFGTGDVSCPRSEGIFWELQSLMKKME 188 (282)
Q Consensus 143 ~~~~A~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~a~~~~~~l~~~M~ 188 (282)
++++|...+........- ..+...+...|+.++|. ..+++..
T Consensus 169 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~----~~~~~a~ 215 (359)
T 3ieg_A 169 EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSL----SEVRECL 215 (359)
T ss_dssp CHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHH----HHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH----HHHHHHH
Confidence 999999855443221111 22233345567788877 4555444
No 33
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.17 E-value=1.9e-10 Score=104.00 Aligned_cols=146 Identities=7% Similarity=-0.097 Sum_probs=128.9
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD 79 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~ 79 (282)
..|.+.|++++|+..|++..+ . .|+..++..+...+...|++++|.+.++ ....| +..+|..+...|.+.|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~-~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIE-L--FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHH-H--CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHh-h--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 457889999999999999987 3 4667788899999999999999999999 44455 5778999999999999999
Q ss_pred HHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686 80 EARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 80 ~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
+|.+.|++.. ..| +..+|..+...|.+.|++++|.+.|+++.+..|+++.++..+...|.+.|++++|...+
T Consensus 322 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp HHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999864 455 47899999999999999999999999999999988899999999999999999987744
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.17 E-value=3.5e-10 Score=91.73 Aligned_cols=157 Identities=11% Similarity=-0.034 Sum_probs=110.8
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHH
Q 043686 28 EIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLE 102 (282)
Q Consensus 28 ~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~ 102 (282)
+++...+..+-..+.+.|++++|...|+ ....| +...+..+...|.+.|++++|.+.|++.. ..|+ ..+|..+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 3556677777777888888888888888 55666 46677788888888888888888888754 4554 677888888
Q ss_pred HHHhc-----------CChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecC-e---EEEEecCC
Q 043686 103 GCRIH-----------VQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRN-K---VHVFGTGD 167 (282)
Q Consensus 103 ~~~~~-----------g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~-~---~~~~i~~~ 167 (282)
.|.+. |++++|...|++..++.|+++..|..+...|...|++++|...+......+ . ...+-..+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~ 161 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELY 161 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 88888 888888888888888888887888888888888888888877544322111 0 02233335
Q ss_pred CCCCChHHHHHHHHHHHHHHH
Q 043686 168 VSCPRSEGIFWELQSLMKKME 188 (282)
Q Consensus 168 ~~~~~~~~a~~~~~~l~~~M~ 188 (282)
...|+.++|. ..|++..
T Consensus 162 ~~~g~~~~A~----~~~~~al 178 (217)
T 2pl2_A 162 LSMGRLDEAL----AQYAKAL 178 (217)
T ss_dssp HHHTCHHHHH----HHHHHHH
T ss_pred HHcCCHHHHH----HHHHHHH
Confidence 5677788877 4444443
No 35
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.17 E-value=1.2e-09 Score=87.61 Aligned_cols=145 Identities=10% Similarity=0.022 Sum_probs=124.6
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcC-CCHHHHHHHhh--cc--CCCC-hhHHHHHHHHHHccC
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTA-GMVEEGWLCFN--RI--RSPK-VTHHALMVSVLARAG 76 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~-g~~~~a~~l~~--~g--~~p~-~~~~~~li~~~~~~g 76 (282)
..|...|++++|++.|++..+ .. +.+..++..+...+... |++++|...++ .. ..|+ ...+..+...|.+.|
T Consensus 50 ~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 127 (225)
T 2vq2_A 50 EIYQYLKVNDKAQESFRQALS-IK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQG 127 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCChHHHHHHHHHHHH-hC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcC
Confidence 467889999999999999887 32 23677888999999999 99999999999 22 3343 678899999999999
Q ss_pred ChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CChhHHHHHHHHHHHcCchhhhhc
Q 043686 77 LFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKP-LSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 77 ~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p-~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
++++|.+.|++.. ..| +..+|..+...|.+.|++++|.+.++++....| ++...+..+...|.+.|+.++|..
T Consensus 128 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 203 (225)
T 2vq2_A 128 QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYE 203 (225)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 9999999999865 445 488999999999999999999999999999888 888889989899999998877754
No 36
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.16 E-value=6.4e-12 Score=111.69 Aligned_cols=166 Identities=8% Similarity=0.016 Sum_probs=77.7
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHH
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEA 81 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A 81 (282)
+.++.+.|++++|+..++..++ . .|++.+.+.++.+|.+.|+++++.++++. |+..+|+.+.+.|...|++++|
T Consensus 68 ~~~ae~~g~~EeAi~yl~~ark-~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA 141 (449)
T 1b89_A 68 VQAANTSGNWEELVKYLQMARK-K--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAA 141 (449)
T ss_dssp --------------------------------------------CHHHHTTTTTC---C----------------CTTTH
T ss_pred HHHHHhCCCHHHHHHHHHHHHH-h--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHH
Confidence 4456667777777775555544 2 45567777777778887777777777762 5666788888888888888888
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeee-cCeE
Q 043686 82 RIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEF-RNKV 160 (282)
Q Consensus 82 ~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~-~~~~ 160 (282)
...|..++ .|..|.+++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+.. ....
T Consensus 142 ~~~Y~~a~------n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l 210 (449)
T 1b89_A 142 KLLYNNVS------NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADEL 210 (449)
T ss_dssp HHHHHHTT------CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHH
T ss_pred HHHHHHhh------hHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhH
Confidence 88888774 6888888888888888888888877 3568999999999999999999763322110 0001
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHHHH
Q 043686 161 HVFGTGDVSCPRSEGIFWELQSLMKKME 188 (282)
Q Consensus 161 ~~~i~~~~~~~~~~~a~~~~~~l~~~M~ 188 (282)
..++..|.+.|+++++. .+++.-.
T Consensus 211 ~~lv~~Yek~G~~eEai----~lLe~aL 234 (449)
T 1b89_A 211 EELINYYQDRGYFEELI----TMLEAAL 234 (449)
T ss_dssp HHHHHHHHHTTCHHHHH----HHHHHHT
T ss_pred HHHHHHHHHCCCHHHHH----HHHHHHh
Confidence 23455677888888887 6665443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.15 E-value=4.8e-10 Score=91.87 Aligned_cols=150 Identities=11% Similarity=0.035 Sum_probs=128.2
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCC--CCCC----HHHHHHHHHHHhcCCCHHHHHHHhh--cc-----------------
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSS--IEID----PLTFAAVLHACSTAGMVEEGWLCFN--RI----------------- 57 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g--~~p~----~~ty~~ll~a~~~~g~~~~a~~l~~--~g----------------- 57 (282)
..|.+.|++++|++.|.+..+ .. ..|+ ..+|..+...+.+.|++++|...|+ ..
T Consensus 46 ~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a 124 (258)
T 3uq3_A 46 AAEYEKGEYETAISTLNDAVE-QGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKE 124 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH-hCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHH
Confidence 467889999999999999876 21 2223 4788889999999999999999998 22
Q ss_pred ---------CCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 043686 58 ---------RSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKP 125 (282)
Q Consensus 58 ---------~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p 125 (282)
..|+ ...+..+...|.+.|++++|.+.|++.. ..| +..+|..+...|.+.|++++|.+.|++..+..|
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 125 LKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 4553 6678899999999999999999999864 344 588999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHcCchhhhhcccce
Q 043686 126 LSAENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 126 ~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
+++.+|..+...|.+.|++++|...+..
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999999999875543
No 38
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.13 E-value=8.5e-10 Score=93.73 Aligned_cols=185 Identities=11% Similarity=-0.036 Sum_probs=134.5
Q ss_pred hhhhhcC-ChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCC
Q 043686 3 LGYSLHG-QRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGL 77 (282)
Q Consensus 3 ~~~~~~g-~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~ 77 (282)
..|...| ++++|++.|++... ..| +...|..+...+...|++++|.+.|+ ....| +...+..+...|.+.|+
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATT---LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHT---TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence 3567778 88999999998876 334 45678888888888999999999988 34444 35677778888999999
Q ss_pred hHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC---------CCChhHHHHHHHHHHHcCchhh
Q 043686 78 FDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELK---------PLSAENYIMLSNWYAAEAKWDV 146 (282)
Q Consensus 78 ~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------p~~~~~~~~Li~~y~~~g~~~~ 146 (282)
+++|.+.|++.. ..| +..+|+.+...|.+.|++++|.+.|+++.... |..+.++..+...|.+.|++++
T Consensus 175 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999998854 445 47888888889999999999999999888543 5556788888899999999999
Q ss_pred hhcccceeee----cCeE-EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCC
Q 043686 147 VNQAYSWIEF----RNKV-HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKP 196 (282)
Q Consensus 147 A~~~~~~~~~----~~~~-~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~ 196 (282)
|...+..... .... ..+-..+...|+.++|. ..+++..+ +.|+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~----~~~~~al~--~~p~~ 303 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAV----DYFHTALG--LRRDD 303 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHH----HHHHTTTT--TCSCC
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHH----HHHHHHHc--cCCCc
Confidence 8884443221 1111 23334455677888887 66665543 34554
No 39
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.10 E-value=1.2e-09 Score=92.66 Aligned_cols=147 Identities=10% Similarity=0.008 Sum_probs=128.3
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHH
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEA 81 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A 81 (282)
+...|++++|++.|++..+ .. +.+..++..+...+.+.|++++|.+.++ ....| +..++..+...|.+.|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALE-MN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHh-hC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 7788999999999999887 32 2367889999999999999999999999 44445 478899999999999999999
Q ss_pred HHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------------ChhHHHHHHHHHHHcCchhhh
Q 043686 82 RIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPL------------SAENYIMLSNWYAAEAKWDVV 147 (282)
Q Consensus 82 ~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~------------~~~~~~~Li~~y~~~g~~~~A 147 (282)
.+.|++.. ..| +..+|..+...|.+.|++++|.+.|+++....|. +..+|..+...|.+.|+.++|
T Consensus 226 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 226 LDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 99999864 445 5889999999999999999999999999988887 678999999999999999999
Q ss_pred hcccce
Q 043686 148 NQAYSW 153 (282)
Q Consensus 148 ~~~~~~ 153 (282)
...+..
T Consensus 306 ~~~~~~ 311 (327)
T 3cv0_A 306 ELTYAQ 311 (327)
T ss_dssp HHHTTC
T ss_pred HHHHHH
Confidence 886543
No 40
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.08 E-value=3.2e-09 Score=77.47 Aligned_cols=122 Identities=13% Similarity=0.113 Sum_probs=84.5
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD 79 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~ 79 (282)
..|.+.|++++|+++|+++.+ .. +.+..++..+...+...|++++|...++ ....| +...+..+...|.+.|+++
T Consensus 9 ~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 86 (136)
T 2fo7_A 9 NAYYKQGDYDEAIEYYQKALE-LD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 86 (136)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHcCcHHHHHHHHHHHHH-cC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHH
Confidence 456677888888888887765 32 2345666777777777777888877777 22333 4556777777777778888
Q ss_pred HHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 043686 80 EARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPL 126 (282)
Q Consensus 80 ~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~ 126 (282)
+|.+.|+++. ..| +..+|..+...|.+.|++++|.+.|+++....|.
T Consensus 87 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 87 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8877777754 233 4667777777777778888888777777766663
No 41
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.07 E-value=8.6e-10 Score=93.57 Aligned_cols=180 Identities=12% Similarity=0.057 Sum_probs=136.1
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHH-----------
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALM----------- 68 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~l----------- 68 (282)
..|.+.|++++|++.|++..+ .. +.+..++..+...+...|++++|.+.++ ....|+ ...+..+
T Consensus 63 ~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (327)
T 3cv0_A 63 LTQAENEKDGLAIIALNHARM-LD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLN 140 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHH
Confidence 467889999999999999987 32 2367788899999999999999999998 444454 3333333
Q ss_pred ---HH-HHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 043686 69 ---VS-VLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEA 142 (282)
Q Consensus 69 ---i~-~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g 142 (282)
.. .+...|++++|.+.+++.. ..| +..+|..+...|.+.|++++|.+.++++....|+++.++..+...|.+.|
T Consensus 141 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 141 VQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp -----CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 22 3778899999999999864 344 58899999999999999999999999999999988889999999999999
Q ss_pred chhhhhcccceeeecC--eE---EEEecCCCCCCChHHHHHHHHHHHHHHH
Q 043686 143 KWDVVNQAYSWIEFRN--KV---HVFGTGDVSCPRSEGIFWELQSLMKKME 188 (282)
Q Consensus 143 ~~~~A~~~~~~~~~~~--~~---~~~i~~~~~~~~~~~a~~~~~~l~~~M~ 188 (282)
++++|...+....... .. ..+...+...|+.++|. ..+++..
T Consensus 221 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~~~a~ 267 (327)
T 3cv0_A 221 RPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAA----KQLVRAI 267 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH----HHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHH----HHHHHHH
Confidence 9999998554432111 11 23334466788899998 5555444
No 42
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.04 E-value=1.2e-09 Score=99.24 Aligned_cols=145 Identities=10% Similarity=0.007 Sum_probs=91.8
Q ss_pred hhhhcCCh-HHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHcc----
Q 043686 4 GYSLHGQR-ELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARA---- 75 (282)
Q Consensus 4 ~~~~~g~~-~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~---- 75 (282)
.|...|++ ++|++.|++..+ ..|+ ...|..+-.++.+.|++++|.+.|+ ..+.|+...+..+...|.+.
T Consensus 111 ~~~~~g~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~ 187 (474)
T 4abn_A 111 ALNVTPDYSPEAEVLLSKAVK---LEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDS 187 (474)
T ss_dssp HHTSSSSCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSC
T ss_pred HHHhccccHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCC
Confidence 34556666 666666666655 2343 4566666666666666666666666 45556656666666666666
Q ss_pred -----CChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhc--------CChhHHHHHHHHHHhcCC---CChhHHHHHHHH
Q 043686 76 -----GLFDEARIFIQEYH-MERY-PEVLRALLEGCRIH--------VQVKTGKRVIDQLCELKP---LSAENYIMLSNW 137 (282)
Q Consensus 76 -----g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~p---~~~~~~~~Li~~ 137 (282)
|++++|.+.|++.. ..|+ ...|..+...|... |++++|.+.|++..++.| .++..|..+...
T Consensus 188 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~ 267 (474)
T 4abn_A 188 GDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATL 267 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHH
Confidence 66666666666643 3443 56666666666666 666666666666666666 666666666666
Q ss_pred HHHcCchhhhhccc
Q 043686 138 YAAEAKWDVVNQAY 151 (282)
Q Consensus 138 y~~~g~~~~A~~~~ 151 (282)
|.+.|++++|...+
T Consensus 268 ~~~~g~~~~A~~~~ 281 (474)
T 4abn_A 268 HKYEESYGEALEGF 281 (474)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 66666666666633
No 43
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.04 E-value=5.2e-09 Score=84.84 Aligned_cols=145 Identities=7% Similarity=-0.092 Sum_probs=124.3
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDE 80 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~ 80 (282)
.|.+.|++++|++.|++..+ ..-.++...+..+-.++.+.|++++|...|+ ....|+ ...|..+...|.+.|++++
T Consensus 16 ~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 94 (228)
T 4i17_A 16 DALNAKNYAVAFEKYSEYLK-LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQE 94 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHccCHHHHHHHHHHHHh-ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHH
Confidence 56789999999999999887 4443788888888889999999999999999 667775 6788999999999999999
Q ss_pred HHHHHHhcC-CCCC-H-------HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCch--hhh
Q 043686 81 ARIFIQEYH-MERY-P-------EVLRALLEGCRIHVQVKTGKRVIDQLCELKPL--SAENYIMLSNWYAAEAKW--DVV 147 (282)
Q Consensus 81 A~~l~~~m~-~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~--~~~~~~~Li~~y~~~g~~--~~A 147 (282)
|.+.|++.. ..|+ . .+|..+-..+.+.|++++|.+.|++..+..|+ ++..|..+...|...|+. ++|
T Consensus 95 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a 174 (228)
T 4i17_A 95 YIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKA 174 (228)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999854 4554 4 56888888999999999999999999999998 788999999999988876 554
Q ss_pred hc
Q 043686 148 NQ 149 (282)
Q Consensus 148 ~~ 149 (282)
..
T Consensus 175 ~~ 176 (228)
T 4i17_A 175 TP 176 (228)
T ss_dssp GG
T ss_pred Hh
Confidence 44
No 44
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.02 E-value=5.6e-09 Score=76.17 Aligned_cols=119 Identities=19% Similarity=0.199 Sum_probs=102.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CC-CCHHHHHHHHHHHHhc
Q 043686 33 TFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-ME-RYPEVLRALLEGCRIH 107 (282)
Q Consensus 33 ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~-p~~~~~~~li~~~~~~ 107 (282)
.|..+...+...|++++|..+++ ....| +...+..+...|.+.|++++|.+.|+++. .. .+..+|..+...|.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 56777888899999999999999 33334 57788899999999999999999999865 33 4578899999999999
Q ss_pred CChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686 108 VQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 108 g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
|++++|.+.++++....|.+..++..+...|.+.|++++|...+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 99999999999999999988889999999999999988886544
No 45
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.02 E-value=1.6e-09 Score=98.46 Aligned_cols=148 Identities=8% Similarity=-0.059 Sum_probs=133.1
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcC---------CCHHHHHHHhh--ccCCCC-hhHHHHHHH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTA---------GMVEEGWLCFN--RIRSPK-VTHHALMVS 70 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~---------g~~~~a~~l~~--~g~~p~-~~~~~~li~ 70 (282)
..|.+.|++++|++.|++..+ +.|+...+..+-..+... |++++|.+.|+ ..+.|+ ...|..+..
T Consensus 145 ~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 221 (474)
T 4abn_A 145 EVYWKKGDVTSAHTCFSGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGN 221 (474)
T ss_dssp HHHHHHTCHHHHHHHHHHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 467889999999999999987 568888899999999999 99999999999 555664 788999999
Q ss_pred HHHcc--------CChHHHHHHHHhcC-CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHH
Q 043686 71 VLARA--------GLFDEARIFIQEYH-MER----YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNW 137 (282)
Q Consensus 71 ~~~~~--------g~~~~A~~l~~~m~-~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~ 137 (282)
+|.+. |++++|.+.|++.. ..| +...|..+...|.+.|++++|.+.|++..++.|++...+..+...
T Consensus 222 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~ 301 (474)
T 4abn_A 222 AYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQL 301 (474)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99998 99999999999865 566 689999999999999999999999999999999998999999999
Q ss_pred HHHcCchhhhhcccce
Q 043686 138 YAAEAKWDVVNQAYSW 153 (282)
Q Consensus 138 y~~~g~~~~A~~~~~~ 153 (282)
|...|++++|.+.+..
T Consensus 302 ~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 302 LEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999875544
No 46
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.99 E-value=1.3e-09 Score=83.11 Aligned_cols=137 Identities=8% Similarity=-0.063 Sum_probs=112.8
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD 79 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~ 79 (282)
.+...|++++|++.|.+... ..|+. ..+-.+-..|.+.|++++|.+.|+ ..+.| +...|..+...|.+.|+++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 35567899999999998654 34443 345567778999999999999999 66777 4789999999999999999
Q ss_pred HHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHH-HHHHHhcCCCChhHHHHHHHHHHHcCc
Q 043686 80 EARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRV-IDQLCELKPLSAENYIMLSNWYAAEAK 143 (282)
Q Consensus 80 ~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~p~~~~~~~~Li~~y~~~g~ 143 (282)
+|...|++.. +.|+ ..+|..+...|.+.|+.++|.+. +++..++.|+++.+|......+...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999854 6775 88999999999999999876665 588899999999999988888777664
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.96 E-value=6.7e-09 Score=91.68 Aligned_cols=142 Identities=7% Similarity=-0.109 Sum_probs=125.2
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCC-HHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCCh
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGM-VEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLF 78 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~-~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~ 78 (282)
.+.+.|++++|++.|++..+ +.|+ ...|+.+-.++.+.|+ +++|...|+ ..+.| +...|+.+..+|.+.|++
T Consensus 106 ~~~~~g~~~~Al~~~~~al~---l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~ 182 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIE---LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP 182 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHCCChHHHHHHHHHHHH---hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCH
Confidence 56778999999999999987 5565 5677888889999997 999999999 66677 478999999999999999
Q ss_pred HHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH-cCchhhhh
Q 043686 79 DEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAA-EAKWDVVN 148 (282)
Q Consensus 79 ~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~-~g~~~~A~ 148 (282)
++|...|++.. ..| +..+|+.+...+.+.|++++|...|+++.+++|.+...|+.+...|.+ .|..++|.
T Consensus 183 ~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 183 SQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence 99999999965 566 489999999999999999999999999999999999999999999999 66657773
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.96 E-value=1.1e-08 Score=84.54 Aligned_cols=145 Identities=11% Similarity=-0.044 Sum_probs=119.3
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCC--C-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCCh
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIE--I-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLF 78 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~--p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~ 78 (282)
+...|++++|++.|+++.+ .... | +..+|..+...+...|++++|...|+ ....| +..+|..+...|.+.|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILA-SRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHT-SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHh-cccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 3456899999999999987 5321 1 45678888889999999999999999 44455 578999999999999999
Q ss_pred HHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686 79 DEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 79 ~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
++|.+.|++.. ..| +..+|..+...|.+.|++++|.+.|+++....|++. ....+...+...|++++|...+
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP-FRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999865 445 588999999999999999999999999999999774 4445555666778888887644
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.94 E-value=4.6e-09 Score=87.02 Aligned_cols=147 Identities=6% Similarity=-0.017 Sum_probs=117.4
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChh----HHHHHHHHHHcc
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVT----HHALMVSVLARA 75 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~----~~~~li~~~~~~ 75 (282)
..+.+.|++++|+..|++..+ ..|+. ..+..+...+...|++++|.+.++ ....++.. .|..+...|.+.
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEA---KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH---TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 357789999999999999887 34544 378888889999999999999999 22223333 388999999999
Q ss_pred CChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHH-HHHHHcCchhhhhcccc
Q 043686 76 GLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLS-NWYAAEAKWDVVNQAYS 152 (282)
Q Consensus 76 g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li-~~y~~~g~~~~A~~~~~ 152 (282)
|++++|.+.|++.. ..| +..+|..+...|.+.|++++|.+.|++..+..|.++..|..+. ..|.+ +++++|...+.
T Consensus 88 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~ 166 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN-KEYVKADSSFV 166 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 99999999999864 444 4789999999999999999999999999988998888888888 55544 47777766443
Q ss_pred e
Q 043686 153 W 153 (282)
Q Consensus 153 ~ 153 (282)
.
T Consensus 167 ~ 167 (272)
T 3u4t_A 167 K 167 (272)
T ss_dssp H
T ss_pred H
Confidence 3
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.94 E-value=1.3e-08 Score=84.13 Aligned_cols=185 Identities=15% Similarity=0.049 Sum_probs=139.8
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD 79 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~ 79 (282)
..|...|++++|++.|++..+ .. +.+..+|..+...+...|++++|...|+ ....| +...+..+...|.+.|+++
T Consensus 51 ~~~~~~~~~~~A~~~~~~al~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 128 (275)
T 1xnf_A 51 VLYDSLGLRALARNDFSQALA-IR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDK 128 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHH-cC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHH
Confidence 467889999999999999887 32 2357889999999999999999999999 44455 5789999999999999999
Q ss_pred HHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecC
Q 043686 80 EARIFIQEYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRN 158 (282)
Q Consensus 80 ~A~~l~~~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~ 158 (282)
+|.+.|+++. ..|+...+...+..+...|++++|...+++.....|++...+. +...+...++.++|...+.......
T Consensus 129 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~ 207 (275)
T 1xnf_A 129 LAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDN 207 (275)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhccc
Confidence 9999999975 5676555555566667789999999999999887776755554 6777777777777776443321111
Q ss_pred ---------eEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCC
Q 043686 159 ---------KVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKP 196 (282)
Q Consensus 159 ---------~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~ 196 (282)
....+-..+...|+.++|. ..|++..+. .|+.
T Consensus 208 ~~~~~~~~~~~~~la~~~~~~g~~~~A~----~~~~~al~~--~p~~ 248 (275)
T 1xnf_A 208 TSLAEHLSETNFYLGKYYLSLGDLDSAT----ALFKLAVAN--NVHN 248 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHH----HHHHHHHTT--CCTT
T ss_pred ccccccccHHHHHHHHHHHHcCCHHHHH----HHHHHHHhC--Cchh
Confidence 1123334466788999998 777777654 3543
No 51
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.93 E-value=2.8e-09 Score=83.42 Aligned_cols=155 Identities=13% Similarity=0.099 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHH
Q 043686 30 DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGC 104 (282)
Q Consensus 30 ~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~ 104 (282)
++..|..+-..+.+.|++++|.+.|+ ..+.|+ ...+..+...|.+.|++++|.+.+.... ..| +...+..+...+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 56789999999999999999999999 666774 7789999999999999999999999865 445 478888888999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecC--e--E-EEEecCCCCCCChHHHHHH
Q 043686 105 RIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRN--K--V-HVFGTGDVSCPRSEGIFWE 179 (282)
Q Consensus 105 ~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~--~--~-~~~i~~~~~~~~~~~a~~~ 179 (282)
...+++++|.+.+.+.....|.+..++..+...|.+.|++++|...+......+ . . ..+-..+.+.|+.++|.
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~-- 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV-- 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH--
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH--
Confidence 999999999999999999999999999999999999999999988554422111 0 0 22233455677777777
Q ss_pred HHHHHHHHH
Q 043686 180 LQSLMKKME 188 (282)
Q Consensus 180 ~~~l~~~M~ 188 (282)
..|++-.
T Consensus 162 --~~~~~al 168 (184)
T 3vtx_A 162 --KYFKKAL 168 (184)
T ss_dssp --HHHHHHH
T ss_pred --HHHHHHH
Confidence 5555443
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.89 E-value=5.3e-08 Score=80.53 Aligned_cols=144 Identities=13% Similarity=0.062 Sum_probs=118.6
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCC--HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCC
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEID--PLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGL 77 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~--~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~ 77 (282)
..|.+.|++++|++.|++..+ .+-.|+ ..+|..+-..+...|++++|...|+ ....| +..+|..+...|.+.|+
T Consensus 45 ~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 123 (272)
T 3u4t_A 45 VCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN 123 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC
Confidence 467889999999999999887 543333 3358888889999999999999999 44555 46799999999999999
Q ss_pred hHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCc---hhhh
Q 043686 78 FDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAK---WDVV 147 (282)
Q Consensus 78 ~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~---~~~A 147 (282)
+++|.+.|++.. ..|+ ..+|..+...+...+++++|.+.|+++.+..|++...+..+...|...|+ .++|
T Consensus 124 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A 198 (272)
T 3u4t_A 124 FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLA 198 (272)
T ss_dssp HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTT
T ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHH
Confidence 999999999965 5565 77888887344445599999999999999999888888889999988877 5555
No 53
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.88 E-value=3.2e-08 Score=84.35 Aligned_cols=145 Identities=8% Similarity=-0.028 Sum_probs=117.1
Q ss_pred hcCCh-------HHHHHHHHHhHHhCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCCh-h-HHHHHHHHHHc
Q 043686 7 LHGQR-------ELGLSLFSELEKKSSIEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSPKV-T-HHALMVSVLAR 74 (282)
Q Consensus 7 ~~g~~-------~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~-~-~~~~li~~~~~ 74 (282)
+.|++ ++|+.+|++..+ . +.|+. ..|..+...+.+.|++++|..+|+ ..+.|+. . .|..+...+.+
T Consensus 69 ~~g~~~~~~~~~~~A~~~~~rAl~-~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 146 (308)
T 2ond_A 69 EKGDMNNAKLFSDEAANIYERAIS-T-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR 146 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHT-T-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH
T ss_pred hccchhhcccchHHHHHHHHHHHH-H-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHH
Confidence 45886 899999999875 2 45654 588899999999999999999999 6677753 3 89999999999
Q ss_pred cCChHHHHHHHHhcC-CCC-CHHHHHHHHHH-HHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686 75 AGLFDEARIFIQEYH-MER-YPEVLRALLEG-CRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 75 ~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
.|++++|.++|++.. ..| +...|...... +...|+.++|.++|++..+..|+++..|..++..+.+.|+.++|...+
T Consensus 147 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~ 226 (308)
T 2ond_A 147 AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF 226 (308)
T ss_dssp HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999854 344 35556544333 223699999999999999999999999999999999999988886654
Q ss_pred ce
Q 043686 152 SW 153 (282)
Q Consensus 152 ~~ 153 (282)
+.
T Consensus 227 ~~ 228 (308)
T 2ond_A 227 ER 228 (308)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 54
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.88 E-value=1.5e-08 Score=92.22 Aligned_cols=242 Identities=10% Similarity=0.000 Sum_probs=171.5
Q ss_pred CChHHHHHHHHHhHHhCCCCCC--------HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCCh
Q 043686 9 GQRELGLSLFSELEKKSSIEID--------PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLF 78 (282)
Q Consensus 9 g~~~~A~~lf~~m~~~~g~~p~--------~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~ 78 (282)
|++++|+.+|+++.+ ..|+ ..+|..+-..+...|++++|...|+ ....|+...|..+...|.+.|++
T Consensus 216 ~~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLS---ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHH---HCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCH
Confidence 588999999999876 4465 3356677778889999999999999 66678888899999999999999
Q ss_pred HHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeee
Q 043686 79 DEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEF 156 (282)
Q Consensus 79 ~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~ 156 (282)
++|.+.|++.. ..| +..+|..+...|.+.|++++|.+.|+++....|.+..+|..+...|.+.|++++|...+.....
T Consensus 293 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999865 445 4889999999999999999999999999999999889999999999999999999985544321
Q ss_pred c----CeE-EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccc-------hhhhhh----------hhhh-
Q 043686 157 R----NKV-HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYV-------DEERKW----------TQIG- 213 (282)
Q Consensus 157 ~----~~~-~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~-------~~~~~~----------~~~~- 213 (282)
. ... ..+...+...|+.++|. ..+++..+.. |+.......+ ..+.+. +...
T Consensus 373 ~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~~~a~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 446 (537)
T 3fp2_A 373 KFPTLPEVPTFFAEILTDRGDFDTAI----KQYDIAKRLE--EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNA 446 (537)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHH----HHHHHHHHHH--HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHH----HHHHHHHHcC--CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHH
Confidence 1 111 23334456778899998 5555544332 3322221111 112222 3333
Q ss_pred hhHHHHHHhhhccCCCCCeEEEeeccccccchHHHHHHHHHhhcce
Q 043686 214 HSEILALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGE 259 (282)
Q Consensus 214 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~ 259 (282)
....+.....+.+........+...+.+.|+.+.|.+.|++.....
T Consensus 447 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 447 AIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 1222222233333222222234566779999999999999877653
No 55
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.86 E-value=4.7e-08 Score=82.62 Aligned_cols=143 Identities=7% Similarity=-0.067 Sum_probs=112.5
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHH-HHHHHHccCChH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHAL-MVSVLARAGLFD 79 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~-li~~~~~~g~~~ 79 (282)
.+.+.|++++|+..|++... ..| +...+..+...+.+.|++++|...++ ....|+...... ....+.+.++.+
T Consensus 126 ~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~ 202 (287)
T 3qou_A 126 QLMQESNYTDALPLLXDAWQ---LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADT 202 (287)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSC
T ss_pred HHHhCCCHHHHHHHHHHHHH---hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccC
Confidence 46678999999999999876 445 44577778888889999999999998 555676443332 223366778888
Q ss_pred HHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHcCchhhhhc
Q 043686 80 EARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS--AENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 80 ~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~--~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
+|.+.|++.. ..|+ ...+..+...|...|++++|.+.|.++....|++ ...+..|...|...|+.++|..
T Consensus 203 ~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~ 276 (287)
T 3qou_A 203 PEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALAS 276 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHH
Confidence 8888887754 4554 7888999999999999999999999999888876 6788999999999999888865
No 56
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.85 E-value=1.5e-08 Score=96.58 Aligned_cols=156 Identities=12% Similarity=0.041 Sum_probs=125.3
Q ss_pred CCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHH
Q 043686 28 EID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALL 101 (282)
Q Consensus 28 ~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li 101 (282)
.|+ ..+|+.|-..+.+.|++++|.+.|+ ..+.|+ ...|+.|..+|.+.|++++|.+.|++.. +.|+ ..+|+.|-
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 354 4589999999999999999999999 667785 7899999999999999999999999854 6776 88999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecC----eE-EEEecCCCCCCChHHH
Q 043686 102 EGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRN----KV-HVFGTGDVSCPRSEGI 176 (282)
Q Consensus 102 ~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~----~~-~~~i~~~~~~~~~~~a 176 (282)
..|.+.|++++|.+.|++..+++|++...|+.|...|.+.|++++|+..+...-..+ .. ..+...+...+++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 999999999999999999999999999999999999999999999998554422111 00 2223334455666665
Q ss_pred HHHHHHH
Q 043686 177 FWELQSL 183 (282)
Q Consensus 177 ~~~~~~l 183 (282)
.+..+++
T Consensus 165 ~~~~~ka 171 (723)
T 4gyw_A 165 DERMKKL 171 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444333
No 57
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.85 E-value=3.5e-08 Score=81.70 Aligned_cols=146 Identities=7% Similarity=-0.096 Sum_probs=113.0
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCC----HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC----hhHHHHHHHHHH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEID----PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK----VTHHALMVSVLA 73 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~----~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~----~~~~~~li~~~~ 73 (282)
.+.+.|++++|++.|++..+ . .|+ ...+..+-.++.+.|++++|...|+ ....|+ ...+..+..+|.
T Consensus 24 ~~~~~g~~~~A~~~~~~~l~-~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~ 100 (261)
T 3qky_A 24 EFYNQGKYDRAIEYFKAVFT-Y--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYY 100 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHGG-G--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHH-h--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHH
Confidence 56789999999999999887 3 354 4677778888999999999999999 334342 446777888888
Q ss_pred c--------cCChHHHHHHHHhcC-CCCC-HHHH-----------------HHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 043686 74 R--------AGLFDEARIFIQEYH-MERY-PEVL-----------------RALLEGCRIHVQVKTGKRVIDQLCELKPL 126 (282)
Q Consensus 74 ~--------~g~~~~A~~l~~~m~-~~p~-~~~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~~p~ 126 (282)
+ .|++++|.+.|++.. ..|+ ...+ ..+...|.+.|++++|...|++.....|+
T Consensus 101 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 180 (261)
T 3qky_A 101 KLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD 180 (261)
T ss_dssp HHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 8 999999999999864 3454 3333 45677899999999999999999998887
Q ss_pred C---hhHHHHHHHHHHHc----------Cchhhhhcccc
Q 043686 127 S---AENYIMLSNWYAAE----------AKWDVVNQAYS 152 (282)
Q Consensus 127 ~---~~~~~~Li~~y~~~----------g~~~~A~~~~~ 152 (282)
+ ...+..+..+|.+. |++++|...+.
T Consensus 181 ~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~ 219 (261)
T 3qky_A 181 TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYE 219 (261)
T ss_dssp STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHH
Confidence 4 34677888888877 55555655443
No 58
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.84 E-value=8.1e-09 Score=86.84 Aligned_cols=150 Identities=13% Similarity=0.142 Sum_probs=121.1
Q ss_pred hhhhhcCChHHHHHHHHHhHHhC-------CCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--c--------cCCC-ChhH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKS-------SIEIDPLTFAAVLHACSTAGMVEEGWLCFN--R--------IRSP-KVTH 64 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~-------g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~--------g~~p-~~~~ 64 (282)
..|...|++++|+.+|++..+ . .-.....++..+...+...|++++|...++ . +-.| ...+
T Consensus 35 ~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 113 (311)
T 3nf1_A 35 IQYASQGRYEVAVPLCKQALE-DLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAAT 113 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH-HHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence 467889999999999999876 3 222334577888889999999999999998 1 2234 3668
Q ss_pred HHHHHHHHHccCChHHHHHHHHhcC-C--------CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc--------CCC
Q 043686 65 HALMVSVLARAGLFDEARIFIQEYH-M--------ERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCEL--------KPL 126 (282)
Q Consensus 65 ~~~li~~~~~~g~~~~A~~l~~~m~-~--------~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~p~ 126 (282)
+..+...|...|++++|.+.|++.. . .|+ ..+|+.+...|...|++++|.+.|+++... .|.
T Consensus 114 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 193 (311)
T 3nf1_A 114 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN 193 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 8899999999999999999998853 1 233 667899999999999999999999999865 554
Q ss_pred ChhHHHHHHHHHHHcCchhhhhcccce
Q 043686 127 SAENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 127 ~~~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
...++..+...|.+.|++++|...+..
T Consensus 194 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 220 (311)
T 3nf1_A 194 VAKTKNNLASCYLKQGKFKQAETLYKE 220 (311)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 556788999999999999999775443
No 59
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.83 E-value=1e-07 Score=73.46 Aligned_cols=118 Identities=9% Similarity=0.030 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHh
Q 043686 32 LTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRI 106 (282)
Q Consensus 32 ~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~ 106 (282)
..|..+...+...|++++|...++ ....| +..++..+...|.+.|++++|.+.+++.. ..| +..+|..+...|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 456677778889999999999999 44445 57789999999999999999999999864 344 58899999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 107 HVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 107 ~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
.|++++|.+.|+++....|.++..+..+...|.+.|++++|..
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 131 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID 131 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHH
Confidence 9999999999999999999888999999999999998887754
No 60
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.83 E-value=3.6e-08 Score=91.25 Aligned_cols=139 Identities=14% Similarity=0.054 Sum_probs=105.3
Q ss_pred cCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHH
Q 043686 8 HGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARI 83 (282)
Q Consensus 8 ~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~ 83 (282)
.|++++|++.|++..+ ..|+ ...|..+-..+.+.|++++|.+.++ ....|+ ...|..+...|.+.|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR---HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 5788999999999876 4454 6678888888999999999999999 556664 7788899999999999999999
Q ss_pred HHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc---Cchhhhhc
Q 043686 84 FIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAE---AKWDVVNQ 149 (282)
Q Consensus 84 l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~---g~~~~A~~ 149 (282)
.|++.. ..|+ ...|..+...|.+.|++++|.+.|++..+..|++...+..+...|... |+.++|..
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~ 149 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA 149 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence 999854 4554 789999999999999999999999999999998888999999999999 89888887
No 61
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.81 E-value=1.6e-07 Score=67.49 Aligned_cols=112 Identities=16% Similarity=0.107 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CC-CCHHHHHHHHHHHH
Q 043686 31 PLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-ME-RYPEVLRALLEGCR 105 (282)
Q Consensus 31 ~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~-p~~~~~~~li~~~~ 105 (282)
..++..+...+...|++++|.+.++ ....| +..++..+...|.+.|++++|...|+++. .. .+..+|..+...|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5678888889999999999999998 33344 57788999999999999999999999865 33 45889999999999
Q ss_pred hcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 043686 106 IHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEA 142 (282)
Q Consensus 106 ~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g 142 (282)
+.|++++|.+.|+++....|+++..+..+...+.+.|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999988888887777776543
No 62
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.80 E-value=2e-08 Score=83.02 Aligned_cols=120 Identities=8% Similarity=0.029 Sum_probs=97.6
Q ss_pred hhhhhcCChHHHHHHHHHhHHhC------CCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--c--------cCCC-ChhH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKS------SIEID-PLTFAAVLHACSTAGMVEEGWLCFN--R--------IRSP-KVTH 64 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~------g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~--------g~~p-~~~~ 64 (282)
..|...|++++|+..|.+..+ . +-.|+ ..++..+-..+...|++++|.+.|. . .-.| ...+
T Consensus 51 ~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 129 (283)
T 3edt_B 51 LVYRDQNKYKEAAHLLNDALA-IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQ 129 (283)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH-HHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 457789999999999999876 3 22233 4578888889999999999999998 1 1134 3678
Q ss_pred HHHHHHHHHccCChHHHHHHHHhcC-C--------CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 043686 65 HALMVSVLARAGLFDEARIFIQEYH-M--------ERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCEL 123 (282)
Q Consensus 65 ~~~li~~~~~~g~~~~A~~l~~~m~-~--------~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 123 (282)
+..+...|...|++++|.+.|++.. . .|+ ..+|..+...|.+.|++++|.+.|++....
T Consensus 130 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 130 LNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999999999998853 2 343 678999999999999999999999998743
No 63
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.79 E-value=9.2e-09 Score=86.49 Aligned_cols=119 Identities=10% Similarity=0.074 Sum_probs=96.9
Q ss_pred hhhhhcCChHHHHHHHHHhHHhC------CCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--c--------cCCCC-hhH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKS------SIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--R--------IRSPK-VTH 64 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~------g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~--------g~~p~-~~~ 64 (282)
..|...|++++|+..|++... . +-.| ...++..+...+...|++++|.+.++ . +-.|+ ..+
T Consensus 77 ~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 77 LVYRDQNKYKDAANLLNDALA-IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH-HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 467789999999999999876 3 2223 34578888889999999999999998 1 33343 567
Q ss_pred HHHHHHHHHccCChHHHHHHHHhcC-C--------CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043686 65 HALMVSVLARAGLFDEARIFIQEYH-M--------ERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCE 122 (282)
Q Consensus 65 ~~~li~~~~~~g~~~~A~~l~~~m~-~--------~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 122 (282)
+..+...|.+.|++++|.+.|++.. . .|+ ..+|..+...|.+.|++++|.+.|+++..
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8899999999999999999998853 1 333 56889999999999999999999999884
No 64
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.77 E-value=4.3e-08 Score=74.94 Aligned_cols=116 Identities=10% Similarity=0.051 Sum_probs=92.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhhccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCC
Q 043686 33 TFAAVLHACSTAGMVEEGWLCFNRIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQ 109 (282)
Q Consensus 33 ty~~ll~a~~~~g~~~~a~~l~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~ 109 (282)
....+.+.+...+-++++ ..+.|+ ...+..+...|.+.|++++|.+.|++.. ..|+ ...|..+-.+|.+.|+
T Consensus 11 ~~~~l~~~~~~~~~l~~a-----l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~ 85 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDI-----NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ 85 (151)
T ss_dssp HHHHHHHHHHTSCCTGGG-----CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCHHHH-----hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc
Confidence 345555555555554433 356774 6678888889999999999999998865 5664 8889999999999999
Q ss_pred hhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686 110 VKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 110 ~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
+++|.+.|++..++.|+++..|..+..+|.+.|++++|...+..
T Consensus 86 ~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 86 FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL 129 (151)
T ss_dssp HHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999989999999999999999988775544
No 65
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.77 E-value=5.4e-08 Score=75.83 Aligned_cols=146 Identities=8% Similarity=-0.031 Sum_probs=111.8
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHH-HHccCCh
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSV-LARAGLF 78 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~-~~~~g~~ 78 (282)
..+.+.|++++|+..|++..+ ..| +...+..+-..+.+.|++++|...++ ....|+...+..+... +.+.+..
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~ 90 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSD---ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAE 90 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCH---HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhccc
Confidence 357789999999999999765 335 45677888889999999999999999 4555543333222211 2232334
Q ss_pred HHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHcCchhhhhccc
Q 043686 79 DEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS--AENYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 79 ~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~--~~~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
.+|.+.|++.. ..|+ ...|..+...+.+.|++++|...|+++.+..|+. ...+..|...|...|+.++|...+
T Consensus 91 ~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 91 SPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp CHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 45788887754 5665 8899999999999999999999999999998854 458999999999999999887643
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.77 E-value=7.1e-08 Score=82.16 Aligned_cols=146 Identities=11% Similarity=-0.010 Sum_probs=116.0
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCH-H-HHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHH-HccC
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDP-L-TFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVL-ARAG 76 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~-~-ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~-~~~g 76 (282)
..+.+.|++++|.++|++..+ +.|+. . .|..+...+.+.|++++|..+|+ ....| +...|....... ...|
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~ 183 (308)
T 2ond_A 107 DYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK 183 (308)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSC
T ss_pred HHHHhcCCHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 356678999999999999987 56653 3 79999999999999999999999 44444 344555444332 2369
Q ss_pred ChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCC-ChhHHHHHHHHHHHcCchhhhhcc
Q 043686 77 LFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCEL---KPL-SAENYIMLSNWYAAEAKWDVVNQA 150 (282)
Q Consensus 77 ~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~p~-~~~~~~~Li~~y~~~g~~~~A~~~ 150 (282)
+.++|.++|++.. ..| +...|..++..+.+.|++++|..+|++.... .|+ ....|..++..+.+.|+.++|...
T Consensus 184 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 184 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999864 345 4889999999999999999999999999974 553 567899999999999998887553
Q ss_pred c
Q 043686 151 Y 151 (282)
Q Consensus 151 ~ 151 (282)
+
T Consensus 264 ~ 264 (308)
T 2ond_A 264 E 264 (308)
T ss_dssp H
T ss_pred H
Confidence 3
No 67
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.76 E-value=2.1e-08 Score=76.38 Aligned_cols=109 Identities=13% Similarity=0.099 Sum_probs=95.4
Q ss_pred HhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHH
Q 043686 41 CSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKR 115 (282)
Q Consensus 41 ~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~ 115 (282)
+...|++++|.+.+. ....|+ ...+-.+-..|.+.|++++|.+.|++.. +.|+ ..+|..+...|.+.|++++|..
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHH
Confidence 445688999999998 555564 5677789999999999999999999864 6675 8899999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 116 VIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 116 ~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
.|++..+++|+++.+|..+...|.+.|+.++|.+
T Consensus 87 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~ 120 (150)
T 4ga2_A 87 CYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAK 120 (150)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 9999999999999999999999999999887644
No 68
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.75 E-value=2.5e-07 Score=73.73 Aligned_cols=122 Identities=7% Similarity=-0.040 Sum_probs=106.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCC
Q 043686 32 LTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQ 109 (282)
Q Consensus 32 ~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~ 109 (282)
..+..+-..+...|++++|.+.|+..+.|+...|..+...|.+.|++++|.+.|++.. ..| +..+|..+...|.+.|+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 3455566678889999999999996678889999999999999999999999999854 445 58899999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCh----------------hHHHHHHHHHHHcCchhhhhcccce
Q 043686 110 VKTGKRVIDQLCELKPLSA----------------ENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 110 ~~~A~~~~~~m~~~~p~~~----------------~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
+++|.+.|++..+..|.+. ..+..+...|.+.|++++|...+..
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999998877665 7889999999999999999886554
No 69
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.73 E-value=2.4e-08 Score=82.55 Aligned_cols=147 Identities=13% Similarity=0.094 Sum_probs=115.1
Q ss_pred hhhcCChHHHHHHHHHhHHh------CCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--c--------cCCCC-hhHHHH
Q 043686 5 YSLHGQRELGLSLFSELEKK------SSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--R--------IRSPK-VTHHAL 67 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~------~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~--------g~~p~-~~~~~~ 67 (282)
....|++++|+++|++..+. ..-.....++..+-..+...|++++|...++ . +-.|+ ..++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34567888888888876541 0112235678888889999999999999998 1 22343 668899
Q ss_pred HHHHHHccCChHHHHHHHHhcC-C--------CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc--------CCCChh
Q 043686 68 MVSVLARAGLFDEARIFIQEYH-M--------ERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCEL--------KPLSAE 129 (282)
Q Consensus 68 li~~~~~~g~~~~A~~l~~~m~-~--------~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~p~~~~ 129 (282)
+...|...|++++|.+.|++.. . .|+ ..+|..+...|...|++++|.+.|+++... .|....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999998853 1 243 678999999999999999999999999865 555567
Q ss_pred HHHHHHHHHHHcCchhhhhccc
Q 043686 130 NYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 130 ~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
++..+...|.+.|++++|...+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~ 192 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLY 192 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 8889999999999999986644
No 70
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.73 E-value=3.4e-07 Score=73.98 Aligned_cols=124 Identities=8% Similarity=-0.023 Sum_probs=102.7
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCC--CChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHH
Q 043686 29 IDPLTFAAVLHACSTAGMVEEGWLCFN--RIRS--PKVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLE 102 (282)
Q Consensus 29 p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~ 102 (282)
.|+..+...-..+.+.|++++|.+.|+ ..+. ++...+..+..+|.+.|++++|.+.|++.. ..|+ ..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456778888888999999999999999 3333 677777779999999999999999999854 6776 778999999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCh-------hHHHHHHHHHHHcCchhhhhcccc
Q 043686 103 GCRIHVQVKTGKRVIDQLCELKPLSA-------ENYIMLSNWYAAEAKWDVVNQAYS 152 (282)
Q Consensus 103 ~~~~~g~~~~A~~~~~~m~~~~p~~~-------~~~~~Li~~y~~~g~~~~A~~~~~ 152 (282)
.|.+.|++++|.+.|++..+..|+++ ..|..+-..|.+.|++++|...+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 141 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYK 141 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHH
Confidence 99999999999999999999999887 446666667777777777655443
No 71
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.72 E-value=1.6e-07 Score=69.27 Aligned_cols=110 Identities=11% Similarity=-0.015 Sum_probs=89.9
Q ss_pred CCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHH
Q 043686 27 IEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRAL 100 (282)
Q Consensus 27 ~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~l 100 (282)
+-|+. ..+...-..+.+.|++++|.+.|+ ..+.| +...|..+..+|.+.|++++|.+.|++.. +.|+ ..+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34543 356677778889999999999998 55556 47788899999999999999999998854 5555 8889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHH
Q 043686 101 LEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSN 136 (282)
Q Consensus 101 i~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~ 136 (282)
..+|...|++++|.+.|++..+++|++...+..|-.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 999999999999999999999999988777766544
No 72
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.72 E-value=3.5e-07 Score=66.16 Aligned_cols=115 Identities=8% Similarity=-0.057 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHH
Q 043686 30 DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGC 104 (282)
Q Consensus 30 ~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~ 104 (282)
+...+..+...+...|++++|...|+ ....| +...+..+...|.+.|++++|.+.+++.. ..| +..+|..+...|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 44577778888999999999999999 33445 57788999999999999999999999854 445 488999999999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCch
Q 043686 105 RIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKW 144 (282)
Q Consensus 105 ~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~ 144 (282)
.+.|++++|.+.|++.....|.+...+..+...|.+.|+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998888999999999888875
No 73
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.71 E-value=7.4e-08 Score=84.99 Aligned_cols=142 Identities=6% Similarity=-0.065 Sum_probs=121.1
Q ss_pred hhhhcCC-hHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCCh
Q 043686 4 GYSLHGQ-RELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLF 78 (282)
Q Consensus 4 ~~~~~g~-~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~ 78 (282)
.|.+.|+ +++|+..|++..+ +.| +...|+.+-.++.+.|++++|...|+ ..+.| +...|..+..+|.+.|++
T Consensus 140 ~l~~~g~d~~eAl~~~~~al~---l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~ 216 (382)
T 2h6f_A 140 LLKSLQKDLHEEMNYITAIIE---EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW 216 (382)
T ss_dssp HHHHTTCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHcccCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCCh
Confidence 4667896 9999999999987 456 45688888889999999999999999 66677 578999999999999999
Q ss_pred HHHHHHHHhcC-CCCC-HHHHHHHHHHHHh-cCChhHH-----HHHHHHHHhcCCCChhHHHHHHHHHHHcC--chhhhh
Q 043686 79 DEARIFIQEYH-MERY-PEVLRALLEGCRI-HVQVKTG-----KRVIDQLCELKPLSAENYIMLSNWYAAEA--KWDVVN 148 (282)
Q Consensus 79 ~~A~~l~~~m~-~~p~-~~~~~~li~~~~~-~g~~~~A-----~~~~~~m~~~~p~~~~~~~~Li~~y~~~g--~~~~A~ 148 (282)
++|.+.|+++. ..|+ ...|+.+...|.+ .|..++| .+.|++...+.|++...|+.+...|.+.| +.++|.
T Consensus 217 ~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 217 DNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHH
Confidence 99999999965 5665 8899999999999 6776888 58899999999999999999999988876 344443
No 74
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.70 E-value=1.8e-09 Score=91.37 Aligned_cols=251 Identities=10% Similarity=-0.049 Sum_probs=162.3
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCC-----HHHHHHHHHHHhcCCCHHHHHHHhh--------ccCCCC-hhHHHHHH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEID-----PLTFAAVLHACSTAGMVEEGWLCFN--------RIRSPK-VTHHALMV 69 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~-----~~ty~~ll~a~~~~g~~~~a~~l~~--------~g~~p~-~~~~~~li 69 (282)
.+.+.|++++|+..|++..+ . .|+ ...+..+...+...|++++|.+.++ .+-.|. ..++..+.
T Consensus 14 ~~~~~g~~~~A~~~~~~al~-~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQ-V--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-H--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHh-h--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 56789999999999999987 4 344 3577888889999999999999998 222332 56788999
Q ss_pred HHHHccCChHHHHHHHHhcC----CCCC----HHHHHHHHHHHHhcCC--------------------hhHHHHHHHHHH
Q 043686 70 SVLARAGLFDEARIFIQEYH----MERY----PEVLRALLEGCRIHVQ--------------------VKTGKRVIDQLC 121 (282)
Q Consensus 70 ~~~~~~g~~~~A~~l~~~m~----~~p~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~ 121 (282)
..|...|++++|.+.|++.. -.++ ..+|..+...|...|+ +++|.+.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999998843 1223 4588899999999999 999999999876
Q ss_pred hc------CCCChhHHHHHHHHHHHcCchhhhhcccceee----ecC-------eEEEEecCCCCCCChHHHHHHHHHHH
Q 043686 122 EL------KPLSAENYIMLSNWYAAEAKWDVVNQAYSWIE----FRN-------KVHVFGTGDVSCPRSEGIFWELQSLM 184 (282)
Q Consensus 122 ~~------~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~----~~~-------~~~~~i~~~~~~~~~~~a~~~~~~l~ 184 (282)
.+ .|....++..+...|...|++++|...+.... ..+ ....+...+...|+.++|...+++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 22234578889999999999999998443321 111 11223333556788888886665555
Q ss_pred HHHHhCCCccCC-Ccccccchhhhhhhhhh-hhHHHHHHhhhccCCCC------CeEEEeeccccccchHHHHHHHHHhh
Q 043686 185 KKMEGDSLRPKP-DFSLHYVDEERKWTQIG-HSEILALSFGLISTQVG------ATIHVTKNLRMRHICHDFAKAISKMV 256 (282)
Q Consensus 185 ~~M~~~g~~pd~-~t~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~a~~~~~~m~ 256 (282)
+.....+..+.. .++..+...+.+.+... ....+.....+.+.... ....+...+.+.|+.+.|.+++++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 555444433222 12222222223333332 11111111111111100 11123455668899999999998775
Q ss_pred c
Q 043686 257 E 257 (282)
Q Consensus 257 ~ 257 (282)
.
T Consensus 331 ~ 331 (338)
T 3ro2_A 331 E 331 (338)
T ss_dssp H
T ss_pred H
Confidence 4
No 75
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.70 E-value=4e-07 Score=66.31 Aligned_cols=116 Identities=11% Similarity=0.004 Sum_probs=99.0
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHH
Q 043686 28 EIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLE 102 (282)
Q Consensus 28 ~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~ 102 (282)
..+...+..+...+.+.|++++|...|+ ....| +...+..+...|.+.|++++|.+.|++.. ..| +..+|..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3455678888889999999999999999 45556 57888999999999999999999999854 445 5889999999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCc
Q 043686 103 GCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAK 143 (282)
Q Consensus 103 ~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~ 143 (282)
.|.+.|++++|.+.|++..+..|.+...+..+...|.+.|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999887888888888877653
No 76
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.69 E-value=1.1e-09 Score=96.44 Aligned_cols=251 Identities=10% Similarity=-0.015 Sum_probs=164.1
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCH-----HHHHHHHHHHhcCCCHHHHHHHhh--------ccCCC-ChhHHHHHH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDP-----LTFAAVLHACSTAGMVEEGWLCFN--------RIRSP-KVTHHALMV 69 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~-----~ty~~ll~a~~~~g~~~~a~~l~~--------~g~~p-~~~~~~~li 69 (282)
.+.+.|++++|+..|++..+ . .|+. ..|..+-..+...|++++|.+.++ .+-.| ...++..+.
T Consensus 57 ~~~~~g~~~~A~~~~~~al~-~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQ-A--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-H--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHH-h--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 56788999999999999988 4 4542 467788888999999999999998 22234 356888999
Q ss_pred HHHHccCChHHHHHHHHhcC-C------CCC-HHHHHHHHHHHHhcCC-----------------hhHHHHHHHHHHhc-
Q 043686 70 SVLARAGLFDEARIFIQEYH-M------ERY-PEVLRALLEGCRIHVQ-----------------VKTGKRVIDQLCEL- 123 (282)
Q Consensus 70 ~~~~~~g~~~~A~~l~~~m~-~------~p~-~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~- 123 (282)
..|...|++++|.+.|++.. . .|+ ..+|+.+...|...|+ +++|.+.+++...+
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999998853 1 222 5688999999999999 99999999987643
Q ss_pred -----CCCChhHHHHHHHHHHHcCchhhhhcccceeee----cC-------eEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 043686 124 -----KPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEF----RN-------KVHVFGTGDVSCPRSEGIFWELQSLMKKM 187 (282)
Q Consensus 124 -----~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~----~~-------~~~~~i~~~~~~~~~~~a~~~~~~l~~~M 187 (282)
.|....++..+...|...|++++|...+..... .+ ....+-..+...|+.++|...+++.+...
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 122345788899999999999999984433211 11 11233445677889999986666665555
Q ss_pred HhCCCccCC-Ccccccchhhhhhhhhh-hhHHHHHHhhhccCCCC------CeEEEeeccccccchHHHHHHHHHhhc
Q 043686 188 EGDSLRPKP-DFSLHYVDEERKWTQIG-HSEILALSFGLISTQVG------ATIHVTKNLRMRHICHDFAKAISKMVE 257 (282)
Q Consensus 188 ~~~g~~pd~-~t~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~a~~~~~~m~~ 257 (282)
.+.+-.+.. .++..+...+.+.+... ....+.....+.+.... ....+...+...|+.+.|.+++++...
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 544332221 22222222233333332 11111111111111000 111234556688999999888887654
No 77
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.68 E-value=2.9e-07 Score=74.62 Aligned_cols=149 Identities=6% Similarity=-0.112 Sum_probs=111.4
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCC-CCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChh----HHHHHHHHHHc
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSS-IEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVT----HHALMVSVLAR 74 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g-~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~----~~~~li~~~~~ 74 (282)
..+.+.|++++|+..|+++.+ .. -.|. ...+..+..++.+.|++++|...|+ ....|+.. .+-.+..+|.+
T Consensus 12 ~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~ 90 (225)
T 2yhc_A 12 QQKLQDGNWRQAITQLEALDN-RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMA 90 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH-HCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHh
Confidence 357789999999999999987 32 1222 3567778889999999999999999 44455432 34444444443
Q ss_pred ------------------cCChHHHHHHHHhcC-CCCC-HHHH-----------------HHHHHHHHhcCChhHHHHHH
Q 043686 75 ------------------AGLFDEARIFIQEYH-MERY-PEVL-----------------RALLEGCRIHVQVKTGKRVI 117 (282)
Q Consensus 75 ------------------~g~~~~A~~l~~~m~-~~p~-~~~~-----------------~~li~~~~~~g~~~~A~~~~ 117 (282)
.|+.++|.+.|++.. ..|+ ..++ -.+...|.+.|++++|...|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 170 (225)
T 2yhc_A 91 LDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRV 170 (225)
T ss_dssp HHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 678999999999864 4565 3333 23455789999999999999
Q ss_pred HHHHhcCCCCh---hHHHHHHHHHHHcCchhhhhcccc
Q 043686 118 DQLCELKPLSA---ENYIMLSNWYAAEAKWDVVNQAYS 152 (282)
Q Consensus 118 ~~m~~~~p~~~---~~~~~Li~~y~~~g~~~~A~~~~~ 152 (282)
+++.+..|+++ ..+..+..+|.+.|+.++|...+.
T Consensus 171 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~ 208 (225)
T 2yhc_A 171 EGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAK 208 (225)
T ss_dssp HHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 99999999764 457888999999999888865443
No 78
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.66 E-value=1e-07 Score=80.61 Aligned_cols=151 Identities=8% Similarity=-0.055 Sum_probs=116.0
Q ss_pred hhhhhcCChHHHHHHHHHhHHh---CCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC------C-hhHHHHHH
Q 043686 3 LGYSLHGQRELGLSLFSELEKK---SSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSP------K-VTHHALMV 69 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~---~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p------~-~~~~~~li 69 (282)
..|...|++++|++.|.+..+- .|-.++ ..+|+.+-.+|.+.|++++|...++ ..+.| . ..+++.+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3567789999999999886540 122222 4688889999999999999999998 11111 1 45788999
Q ss_pred HHHHcc-CChHHHHHHHHhcC-CCC---C----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChh-------HHHH
Q 043686 70 SVLARA-GLFDEARIFIQEYH-MER---Y----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAE-------NYIM 133 (282)
Q Consensus 70 ~~~~~~-g~~~~A~~l~~~m~-~~p---~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~-------~~~~ 133 (282)
..|.+. |++++|.+.|++.. +.| + ..+|+.+...|.+.|++++|...|++.....|.+.. +|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 999996 99999999998843 222 1 457889999999999999999999999988775533 4677
Q ss_pred HHHHHHHcCchhhhhcccce
Q 043686 134 LSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 134 Li~~y~~~g~~~~A~~~~~~ 153 (282)
+...|...|++++|...+..
T Consensus 205 lg~~~~~~g~~~~A~~~~~~ 224 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQE 224 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHG
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 78889999999999875544
No 79
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.66 E-value=6.5e-09 Score=90.82 Aligned_cols=251 Identities=10% Similarity=-0.046 Sum_probs=162.3
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCC-----HHHHHHHHHHHhcCCCHHHHHHHhh--------ccCCCC-hhHHHHHH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEID-----PLTFAAVLHACSTAGMVEEGWLCFN--------RIRSPK-VTHHALMV 69 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~-----~~ty~~ll~a~~~~g~~~~a~~l~~--------~g~~p~-~~~~~~li 69 (282)
.+.+.|++++|+..|++..+ . .|+ ...|..+-..+...|++++|...++ .+-.|. ..++..+.
T Consensus 18 ~~~~~g~~~~A~~~~~~al~-~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 94 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQ-V--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 94 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-H--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHh-c--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 56788999999999999987 4 344 3567788889999999999999988 222333 56788899
Q ss_pred HHHHccCChHHHHHHHHhcC-C---CCC----HHHHHHHHHHHHhcCC--------------------hhHHHHHHHHHH
Q 043686 70 SVLARAGLFDEARIFIQEYH-M---ERY----PEVLRALLEGCRIHVQ--------------------VKTGKRVIDQLC 121 (282)
Q Consensus 70 ~~~~~~g~~~~A~~l~~~m~-~---~p~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~ 121 (282)
..|...|++++|.+.+++.. . .++ ..+|..+...|...|+ +++|.+.+++..
T Consensus 95 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 174 (406)
T 3sf4_A 95 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL 174 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999998753 1 122 5588899999999999 999999999887
Q ss_pred hc------CCCChhHHHHHHHHHHHcCchhhhhcccceee----ecC-------eEEEEecCCCCCCChHHHHHHHHHHH
Q 043686 122 EL------KPLSAENYIMLSNWYAAEAKWDVVNQAYSWIE----FRN-------KVHVFGTGDVSCPRSEGIFWELQSLM 184 (282)
Q Consensus 122 ~~------~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~----~~~-------~~~~~i~~~~~~~~~~~a~~~~~~l~ 184 (282)
.+ .|....++..+...|...|++++|...+.... ..+ ....+-..+...|+.++|...+++.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 254 (406)
T 3sf4_A 175 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 254 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 43 22234578889999999999999998443311 111 11223334567888999986655555
Q ss_pred HHHHhCCCccCC-Ccccccchhhhhhhhhh-hhHHHHHHhhhccCCCC------CeEEEeeccccccchHHHHHHHHHhh
Q 043686 185 KKMEGDSLRPKP-DFSLHYVDEERKWTQIG-HSEILALSFGLISTQVG------ATIHVTKNLRMRHICHDFAKAISKMV 256 (282)
Q Consensus 185 ~~M~~~g~~pd~-~t~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~a~~~~~~m~ 256 (282)
......+-.+.. .++..+...+.+.+... ....+.....+.+.... ....+...+...|+.+.|.+++++..
T Consensus 255 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 255 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555444432221 22222233333333332 11111111222111110 11113445568899999988888754
Q ss_pred c
Q 043686 257 E 257 (282)
Q Consensus 257 ~ 257 (282)
.
T Consensus 335 ~ 335 (406)
T 3sf4_A 335 E 335 (406)
T ss_dssp H
T ss_pred H
Confidence 3
No 80
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.65 E-value=3.2e-07 Score=73.05 Aligned_cols=119 Identities=13% Similarity=-0.045 Sum_probs=103.3
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDE 80 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~ 80 (282)
.+.+.|++++|++.|++.. .|+...|..+-..+.+.|++++|...|+ ..+.| +...|..+...|.+.|++++
T Consensus 15 ~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 15 LAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHH
Confidence 5678999999999998764 4788999999999999999999999999 44445 57789999999999999999
Q ss_pred HHHHHHhcC-CCCC-----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686 81 ARIFIQEYH-MERY-----------------PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS 127 (282)
Q Consensus 81 A~~l~~~m~-~~p~-----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~ 127 (282)
|.+.|++.. ..|+ ..+|..+...|.+.|++++|.+.|++..+..|.+
T Consensus 90 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 90 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999854 3332 3789999999999999999999999999999954
No 81
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.63 E-value=1.7e-07 Score=69.13 Aligned_cols=96 Identities=13% Similarity=0.077 Sum_probs=85.2
Q ss_pred CCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHH
Q 043686 58 RSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIML 134 (282)
Q Consensus 58 ~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~L 134 (282)
+.|+ ...+......|.+.|++++|.+.|++.. ..| +..+|..+..+|.+.|++++|.+.|++..+++|+++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 5565 5678889999999999999999999854 556 489999999999999999999999999999999999999999
Q ss_pred HHHHHHcCchhhhhcccce
Q 043686 135 SNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 135 i~~y~~~g~~~~A~~~~~~ 153 (282)
...|...|++++|...+..
T Consensus 88 g~~~~~~~~~~~A~~~~~~ 106 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYED 106 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 9999999999999775543
No 82
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.62 E-value=1e-07 Score=90.35 Aligned_cols=148 Identities=10% Similarity=-0.080 Sum_probs=126.7
Q ss_pred hhcCChHHHHHHHHHhHH-----hCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccC
Q 043686 6 SLHGQRELGLSLFSELEK-----KSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAG 76 (282)
Q Consensus 6 ~~~g~~~~A~~lf~~m~~-----~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g 76 (282)
...|++++|++.|++..+ .....|+ ...+..+-.++.+.|++++|.+.|+ ....| +...|..+..+|.+.|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 468999999999999871 0013344 4677788889999999999999999 55566 4778999999999999
Q ss_pred ChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccccee
Q 043686 77 LFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWI 154 (282)
Q Consensus 77 ~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~ 154 (282)
++++|.+.|++.. ..|+ ...|..+-..|.+.|++++ .+.|++..+++|+++..|..+..+|.+.|++++|...++..
T Consensus 482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 560 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEV 560 (681)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 9999999999854 5665 7899999999999999999 99999999999999999999999999999999999866554
No 83
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.61 E-value=1e-06 Score=66.87 Aligned_cols=119 Identities=8% Similarity=-0.000 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHh
Q 043686 32 LTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRI 106 (282)
Q Consensus 32 ~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~ 106 (282)
..+..+-..+...|++++|...|+ ....| +..++..+...|.+.|++++|.+.|++.. ..| +..+|..+...|.+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 456667778888999999999999 44445 57788999999999999999999998854 445 58889999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCChhHHHHHHHH--HHHcCchhhhhcc
Q 043686 107 HVQVKTGKRVIDQLCELKPLSAENYIMLSNW--YAAEAKWDVVNQA 150 (282)
Q Consensus 107 ~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~--y~~~g~~~~A~~~ 150 (282)
.|++++|.+.|++.....|.+...+..+..+ +.+.|++++|...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~ 139 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 139 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999887777544444 7777888887553
No 84
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.57 E-value=1.4e-06 Score=72.39 Aligned_cols=177 Identities=8% Similarity=-0.015 Sum_probs=122.0
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhc----CCCHHHHHHHhh--ccCCCChhHHHHHHHHHHc---
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACST----AGMVEEGWLCFN--RIRSPKVTHHALMVSVLAR--- 74 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~----~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~--- 74 (282)
.|.+.|++++|++.|++..+ . -+...+..+-..+.. .|++++|...|+ ... .+...+..+...|.+
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~ 89 (273)
T 1ouv_A 15 KSYKEKDFTQAKKYFEKACD-L---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-NYSNGCHLLGNLYYSGQG 89 (273)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHhCCCC
Confidence 45677888888888888776 3 244566777777777 888888888888 111 156777788888888
Q ss_pred -cCChHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCchh
Q 043686 75 -AGLFDEARIFIQEYHMERYPEVLRALLEGCRI----HVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAA----EAKWD 145 (282)
Q Consensus 75 -~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~----~g~~~ 145 (282)
.+++++|.+.|++..-..+..++..|-..|.+ .+++++|.+.|++..+..+ +.++..+...|.. .++.+
T Consensus 90 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~~~~~~~~~ 167 (273)
T 1ouv_A 90 VSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND--GDGCTILGSLYDAGRGTPKDLK 167 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSSSCCCHH
T ss_pred cccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc--HHHHHHHHHHHHcCCCCCCCHH
Confidence 88888888888875412367788888888888 8888888888888876653 4677778888887 78888
Q ss_pred hhhcccceeeecCeE-------EEEecCCCCCCChHHHHHHHHHHHHHHHhCC
Q 043686 146 VVNQAYSWIEFRNKV-------HVFGTGDVSCPRSEGIFWELQSLMKKMEGDS 191 (282)
Q Consensus 146 ~A~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g 191 (282)
+|...+...-..+.. ..+..+....++.++|. ..|++..+.+
T Consensus 168 ~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~----~~~~~a~~~~ 216 (273)
T 1ouv_A 168 KALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEAL----ARYSKACELE 216 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHH----HHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHH----HHHHHHHhCC
Confidence 888744432222211 12223333367777777 5555555444
No 85
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.55 E-value=3.5e-07 Score=79.09 Aligned_cols=137 Identities=8% Similarity=-0.033 Sum_probs=113.0
Q ss_pred ChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC----------------hhHHHHHHH
Q 043686 10 QRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK----------------VTHHALMVS 70 (282)
Q Consensus 10 ~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~----------------~~~~~~li~ 70 (282)
++++|++.|+.... ..| +...+..+-..+.+.|++++|...|+ ..+.|+ ...|..+..
T Consensus 128 ~~~~A~~~~~~a~~---~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 128 SFEKAKESWEMNSE---EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEECCCCGGGCCHH---HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHH---HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34455555544333 224 34577788888999999999999999 455555 378999999
Q ss_pred HHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhh
Q 043686 71 VLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVN 148 (282)
Q Consensus 71 ~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~ 148 (282)
+|.+.|++++|.+.|++.. ..| +..+|..+..+|.+.|++++|.+.|++..++.|++...+..+...|.+.|+.++|.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999864 556 58899999999999999999999999999999999999999999999999988884
Q ss_pred c
Q 043686 149 Q 149 (282)
Q Consensus 149 ~ 149 (282)
+
T Consensus 285 ~ 285 (336)
T 1p5q_A 285 K 285 (336)
T ss_dssp H
T ss_pred H
Confidence 3
No 86
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.54 E-value=6.5e-07 Score=71.72 Aligned_cols=78 Identities=21% Similarity=0.234 Sum_probs=64.9
Q ss_pred HHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCc
Q 043686 66 ALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAK 143 (282)
Q Consensus 66 ~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~ 143 (282)
+.+...|.+.|++++|.+.|++.. ..|+ ..+|..+...|...|++++|.+.|++..+++|+++.+|..+...|...|+
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence 348888888999999999998854 5564 78888898899999999999999999999999888888888888876654
No 87
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.54 E-value=5.1e-07 Score=69.94 Aligned_cols=134 Identities=10% Similarity=0.077 Sum_probs=102.7
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHH-HHccCCh-
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSV-LARAGLF- 78 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~-~~~~g~~- 78 (282)
.+...|++++|+..|++... .. +.+...|..+-..+...|++++|...|+ ..+.| +...+..+... |.+.|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIR-AN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CCC-----CCCCHHHHHHHH-HC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhhccCHHHHHHHHHHHHH-hC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence 45678999999999999776 32 2356788888889999999999999999 44445 56778888888 7889998
Q ss_pred -HHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 043686 79 -DEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAA 140 (282)
Q Consensus 79 -~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~ 140 (282)
++|.+.|++.. ..|+ ...|..+...|.+.|++++|...|++.....|++. ....++....+
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~i~~ 160 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI-NRTQLVESINM 160 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc-cHHHHHHHHHH
Confidence 99999999864 4554 78899999999999999999999999999999773 33344444433
No 88
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.54 E-value=8e-07 Score=81.36 Aligned_cols=144 Identities=8% Similarity=-0.028 Sum_probs=113.5
Q ss_pred cCChH-------HHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCCh--hHHHHHHHHHHcc
Q 043686 8 HGQRE-------LGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKV--THHALMVSVLARA 75 (282)
Q Consensus 8 ~g~~~-------~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~--~~~~~li~~~~~~ 75 (282)
.|+++ +|+.+|++..+ .+.| +...|..+...+.+.|++++|..+|+ ..+.|+. ..|..++..+.+.
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~--~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAIS--TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTT--TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHH--HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHh
Confidence 68887 99999999763 2345 46788889999999999999999999 5667753 5899999999999
Q ss_pred CChHHHHHHHHhcC-CCCC-HHHHHHHHH-HHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccc
Q 043686 76 GLFDEARIFIQEYH-MERY-PEVLRALLE-GCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYS 152 (282)
Q Consensus 76 g~~~~A~~l~~~m~-~~p~-~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~ 152 (282)
|++++|.++|++.. ..|+ ...|-.... .+...|+.++|..+|++..+..|+++..|..+++.+.+.|+.++|...++
T Consensus 370 ~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 99999999999853 3343 233322221 24468999999999999999999999999999999988888777755443
Q ss_pred e
Q 043686 153 W 153 (282)
Q Consensus 153 ~ 153 (282)
.
T Consensus 450 ~ 450 (530)
T 2ooe_A 450 R 450 (530)
T ss_dssp H
T ss_pred H
Confidence 3
No 89
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.52 E-value=2.5e-07 Score=70.13 Aligned_cols=88 Identities=6% Similarity=-0.016 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 043686 62 VTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYA 139 (282)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~ 139 (282)
...+..+...+.+.|++++|...|++.. ..| +...|..+-.+|.+.|++++|...|++...+.|+++..+..+..+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 3445555566666666666666666543 333 35566666666666666666666666666666666666666666666
Q ss_pred HcCchhhhhc
Q 043686 140 AEAKWDVVNQ 149 (282)
Q Consensus 140 ~~g~~~~A~~ 149 (282)
..|++++|..
T Consensus 101 ~~g~~~~A~~ 110 (148)
T 2vgx_A 101 QXGELAEAES 110 (148)
T ss_dssp HTTCHHHHHH
T ss_pred HcCCHHHHHH
Confidence 6666666644
No 90
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.51 E-value=1.9e-06 Score=78.90 Aligned_cols=144 Identities=11% Similarity=0.002 Sum_probs=111.8
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCH--HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHH-HHccC
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDP--LTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSV-LARAG 76 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~--~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~-~~~~g 76 (282)
..+.+.|++++|..+|++..+ +.|+. ..|......+.+.|++++|+.+|+ ....|+ ...|-..... |...|
T Consensus 329 ~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 329 DYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcC
Confidence 346678999999999999988 56753 478888888889999999999999 444443 3333322222 34689
Q ss_pred ChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChh----HHHHHHHHHHHcCchhhhhc
Q 043686 77 LFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAE----NYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 77 ~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~----~~~~Li~~y~~~g~~~~A~~ 149 (282)
+.++|.++|++.. ..| +...|..++..+.+.|+.++|..+|++.....|.++. .|...+....+.|+.+.+..
T Consensus 406 ~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~ 484 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 484 (530)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHH
T ss_pred ChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999853 445 4889999999999999999999999999987665443 77777888777788776643
No 91
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=3.2e-06 Score=62.66 Aligned_cols=110 Identities=8% Similarity=-0.065 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC----hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHH
Q 043686 29 IDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK----VTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRAL 100 (282)
Q Consensus 29 p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~l 100 (282)
.+...+..+-..+.+.|++++|.+.|+ ....|+ ...|..+...|.+.|++++|.+.|++.. ..| +...|..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 356778888889999999999999999 666776 6788899999999999999999998854 455 58889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686 101 LEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY 138 (282)
Q Consensus 101 i~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y 138 (282)
...|.+.|++++|.+.|++.....|++...+..+....
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 99999999999999999999999998876666555543
No 92
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.49 E-value=2.9e-06 Score=60.04 Aligned_cols=108 Identities=9% Similarity=0.042 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHH
Q 043686 30 DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGC 104 (282)
Q Consensus 30 ~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~ 104 (282)
+...+..+...+...|++++|...|+ ....| +...+..+...|.+.|++++|.+.+++.. ..| +...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34567777778888999999999998 34445 57788888899999999999999998854 445 478888899999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCChhHHHHHHHH
Q 043686 105 RIHVQVKTGKRVIDQLCELKPLSAENYIMLSNW 137 (282)
Q Consensus 105 ~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~ 137 (282)
.+.|++++|.+.|++..+..|+++..+..+...
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 999999999999999999999876666655443
No 93
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.49 E-value=1.3e-06 Score=62.51 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 043686 62 VTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYA 139 (282)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~ 139 (282)
...+..+...|.+.|++++|.+.|+++. ..| +..+|..+...|.+.|++++|...|+++....|.++.++..+...|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5678889999999999999999999865 344 58899999999999999999999999999999988899999999999
Q ss_pred HcCchhhhhcccc
Q 043686 140 AEAKWDVVNQAYS 152 (282)
Q Consensus 140 ~~g~~~~A~~~~~ 152 (282)
+.|++++|...+.
T Consensus 89 ~~~~~~~A~~~~~ 101 (125)
T 1na0_A 89 KQGDYDEAIEYYQ 101 (125)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HhcCHHHHHHHHH
Confidence 9999888866443
No 94
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.48 E-value=3.3e-06 Score=71.12 Aligned_cols=148 Identities=8% Similarity=-0.034 Sum_probs=110.6
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCCCHH----HHHHHHHHHhcCCCHHHHHHHhh--cc---CCCC----hhHHHHH
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPL----TFAAVLHACSTAGMVEEGWLCFN--RI---RSPK----VTHHALM 68 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~----ty~~ll~a~~~~g~~~~a~~l~~--~g---~~p~----~~~~~~l 68 (282)
+..+...|++++|.+++++..+.....|+.. .|..+...+...|++++|...|+ .. -.++ ..+|+.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3457789999999999999876122334422 33446667778889999999998 11 1223 2368999
Q ss_pred HHHHHccCChHHHHHHHHhcC-----C---CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC------CChhHHHH
Q 043686 69 VSVLARAGLFDEARIFIQEYH-----M---ERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKP------LSAENYIM 133 (282)
Q Consensus 69 i~~~~~~g~~~~A~~l~~~m~-----~---~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p------~~~~~~~~ 133 (282)
...|.+.|++++|.+.|++.. . .|. ..+|+.+...|.+.|++++|.+.+++...+.| .-..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 999999999999999998853 2 122 45889999999999999999999999885322 12567888
Q ss_pred HHHHHHHcCc-hhhhhc
Q 043686 134 LSNWYAAEAK-WDVVNQ 149 (282)
Q Consensus 134 Li~~y~~~g~-~~~A~~ 149 (282)
+...|.+.|+ .++|..
T Consensus 242 lg~~~~~~g~~~~~A~~ 258 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHhCCcHHHHHH
Confidence 9999999995 588854
No 95
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.48 E-value=3.6e-07 Score=69.25 Aligned_cols=113 Identities=13% Similarity=0.012 Sum_probs=91.3
Q ss_pred HHHHhHHhCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CC
Q 043686 17 LFSELEKKSSIEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-ME 91 (282)
Q Consensus 17 lf~~m~~~~g~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~ 91 (282)
.|++... +.|+. ..+..+-..+.+.|++++|...|+ ....| +...|..+..+|.+.|++++|.+.|++.. ..
T Consensus 9 ~~~~al~---~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNE---ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTT---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHc---CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3445443 44543 456667778899999999999999 55666 57788899999999999999999999864 55
Q ss_pred CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHH
Q 043686 92 RY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYI 132 (282)
Q Consensus 92 p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ 132 (282)
|+ ..+|..+..+|...|++++|.+.|+...++.|+++....
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 64 788999999999999999999999999998887654433
No 96
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.48 E-value=7.3e-06 Score=67.87 Aligned_cols=178 Identities=10% Similarity=-0.001 Sum_probs=137.2
Q ss_pred hhhh----cCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhc----CCCHHHHHHHhhccCC-CChhHHHHHHHHHHc
Q 043686 4 GYSL----HGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACST----AGMVEEGWLCFNRIRS-PKVTHHALMVSVLAR 74 (282)
Q Consensus 4 ~~~~----~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~----~g~~~~a~~l~~~g~~-p~~~~~~~li~~~~~ 74 (282)
.|.+ .|++++|++.|++..+ .+ +...+..+-..+.. .++.++|.+.|+..+. .+...+..+...|.+
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACD-LN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHD 122 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHc
Confidence 4556 8999999999999988 65 77888888888988 9999999999991111 267788899999999
Q ss_pred ----cCChHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH----cC
Q 043686 75 ----AGLFDEARIFIQEYHMERYPEVLRALLEGCRI----HVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAA----EA 142 (282)
Q Consensus 75 ----~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~----~g 142 (282)
.|++++|.+.|++..-.-+..++..+-..|.+ .+++++|.+.|++..+.. ++..+..|..+|.. .+
T Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 123 GKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCC
T ss_pred CCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCc
Confidence 99999999999985412357788888888888 899999999999988764 35788899999999 99
Q ss_pred chhhhhcccceeeecCeE-------EEEecCCCCCCChHHHHHHHHHHHHHHHhCC
Q 043686 143 KWDVVNQAYSWIEFRNKV-------HVFGTGDVSCPRSEGIFWELQSLMKKMEGDS 191 (282)
Q Consensus 143 ~~~~A~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g 191 (282)
++++|...+......+.. ..+..+....++.++|. ..|++-.+.|
T Consensus 201 ~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~----~~~~~a~~~~ 252 (273)
T 1ouv_A 201 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAI----ENFKKGCKLG 252 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHH----HHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHH----HHHHHHHHcC
Confidence 999999855443222222 22334444478888887 6776665554
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.47 E-value=1.3e-07 Score=89.55 Aligned_cols=137 Identities=11% Similarity=-0.068 Sum_probs=116.8
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCCh
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLF 78 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~ 78 (282)
..|.+.|++++|++.|++..+ ..| +...|..+-.++...|++++|.+.|+ ..+.|+ ...|..+..+|.+.|++
T Consensus 441 ~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~ 517 (681)
T 2pzi_A 441 RALLDLGDVAKATRKLDDLAE---RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNT 517 (681)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCC
T ss_pred HHHHhcCCHHHHHHHHHHHhc---cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh
Confidence 357789999999999999887 345 45678888889999999999999999 666774 77899999999999999
Q ss_pred HHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCc
Q 043686 79 DEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAK 143 (282)
Q Consensus 79 ~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~ 143 (282)
++ .+.|++.. ..|+ ...|..+-..|.+.|++++|.+.|++..++.|++...|..+..+|...++
T Consensus 518 ~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 518 DE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp CT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 99 99998854 5665 88999999999999999999999999999999888899888888866554
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.47 E-value=2e-06 Score=73.20 Aligned_cols=137 Identities=12% Similarity=0.057 Sum_probs=102.5
Q ss_pred HHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhcc--CCC---ChhHHHHHHHHHHccCChHHHHHHHHhc
Q 043686 14 GLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRI--RSP---KVTHHALMVSVLARAGLFDEARIFIQEY 88 (282)
Q Consensus 14 A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g--~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m 88 (282)
|++.|++... .+ .++..++..+-.++...|++++|.+++..+ ..| +...+..++..|.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~-~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLK-DK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTT-TS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7788888776 54 566666667777888899999999999833 333 4667888899999999999999999998
Q ss_pred C-CCC-----CHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686 89 H-MER-----YPEVLRALLEGCRI----HVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 89 ~-~~p-----~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
. ..| +-.+..-|..++.. .++..+|..+|+++.+..|+ ..+-..|+.++.+.|++++|++.+..
T Consensus 163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~-~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT-WKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS-HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC-cccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 677 34555556656322 33899999999998776663 23445566689999999999986643
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.46 E-value=4.1e-07 Score=72.91 Aligned_cols=146 Identities=11% Similarity=0.035 Sum_probs=106.3
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCH-HHHHH----------------HHHHHhcCCCHHHHHHHhh--ccCCC-Chh
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDP-LTFAA----------------VLHACSTAGMVEEGWLCFN--RIRSP-KVT 63 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~-~ty~~----------------ll~a~~~~g~~~~a~~l~~--~g~~p-~~~ 63 (282)
.+.+.|++++|+..|++..+ ..|+. ..|.. +-.++.+.|++++|...|+ ..+.| +..
T Consensus 13 ~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 89 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIA---LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVD 89 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Confidence 46789999999999999887 45654 34555 7778999999999999999 66667 478
Q ss_pred HHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCC--hhHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 043686 64 HHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQ--VKTGKRVIDQLCELKPLSAENYIMLSNWYA 139 (282)
Q Consensus 64 ~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~ 139 (282)
.+..+...|.+.|++++|.+.|++.. ..|+ ..+|..+...|...|+ .+++...++......|.. ..+..+..++.
T Consensus 90 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~g~~~~ 168 (208)
T 3urz_A 90 CLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YARYRDGLSKL 168 (208)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HHHHHHHHHHH
Confidence 89999999999999999999999964 6675 8899999988876654 344555555543322211 23334455566
Q ss_pred HcCchhhhhcccce
Q 043686 140 AEAKWDVVNQAYSW 153 (282)
Q Consensus 140 ~~g~~~~A~~~~~~ 153 (282)
..|++++|...++.
T Consensus 169 ~~~~~~~A~~~~~~ 182 (208)
T 3urz_A 169 FTTRYEKARNSLQK 182 (208)
T ss_dssp HHHTHHHHHHHHHH
T ss_pred HccCHHHHHHHHHH
Confidence 67787777664443
No 100
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.46 E-value=1.5e-06 Score=73.84 Aligned_cols=121 Identities=12% Similarity=-0.054 Sum_probs=89.5
Q ss_pred CCChhHHHHHHHHHHccCChHHHHHHHHhc-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----Chh
Q 043686 59 SPKVTHHALMVSVLARAGLFDEARIFIQEY-HMER---YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPL-----SAE 129 (282)
Q Consensus 59 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m-~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~-----~~~ 129 (282)
.++..++..+..+|...|++++|.+++.+- ...| +...+-.++..|.+.|+.+.|.+.+++|.+..|+ + .
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d-~ 175 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDN-E 175 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHH-H
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccch-H
Confidence 456666678889999999999999999985 4343 4788899999999999999999999999999983 3 4
Q ss_pred HHHHHHHH--HH--HcCchhhhhcccceeeecCe----EEEEecCCCCCCChHHHHHHH
Q 043686 130 NYIMLSNW--YA--AEAKWDVVNQAYSWIEFRNK----VHVFGTGDVSCPRSEGIFWEL 180 (282)
Q Consensus 130 ~~~~Li~~--y~--~~g~~~~A~~~~~~~~~~~~----~~~~i~~~~~~~~~~~a~~~~ 180 (282)
+...|..+ .. ..++..+|...|+.+..... ...++.++...|++++|.+.+
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence 44555545 22 23489999887776544332 123334677889999997333
No 101
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.45 E-value=3.7e-07 Score=77.12 Aligned_cols=151 Identities=7% Similarity=-0.084 Sum_probs=106.5
Q ss_pred hhhhhcCChHHHHHHHHHhHHh---CCCCC-CHHHHHHHHHHHhcC-CCHHHHHHHhh--ccCCCC-------hhHHHHH
Q 043686 3 LGYSLHGQRELGLSLFSELEKK---SSIEI-DPLTFAAVLHACSTA-GMVEEGWLCFN--RIRSPK-------VTHHALM 68 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~---~g~~p-~~~ty~~ll~a~~~~-g~~~~a~~l~~--~g~~p~-------~~~~~~l 68 (282)
..|.+.|++++|+..|++..+- .|-.+ -..+++.+-..|... |++++|...|+ ..+.|+ ..+++.+
T Consensus 85 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 164 (292)
T 1qqe_A 85 KCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKC 164 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 3577889999999999987650 11111 135788888899996 99999999999 222221 3578899
Q ss_pred HHHHHccCChHHHHHHHHhcC-CCCC---H-----HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhH-----HHHH
Q 043686 69 VSVLARAGLFDEARIFIQEYH-MERY---P-----EVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAEN-----YIML 134 (282)
Q Consensus 69 i~~~~~~g~~~~A~~l~~~m~-~~p~---~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~-----~~~L 134 (282)
...|.+.|++++|.+.|++.. ..|+ . .+|..+..+|...|++++|...|++..++.|....+ +..|
T Consensus 165 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l 244 (292)
T 1qqe_A 165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSL 244 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHH
Confidence 999999999999999999854 3333 1 267888889999999999999999999888864332 3445
Q ss_pred HHHHH--HcCchhhhhcccce
Q 043686 135 SNWYA--AEAKWDVVNQAYSW 153 (282)
Q Consensus 135 i~~y~--~~g~~~~A~~~~~~ 153 (282)
...|. ..+++++|...++.
T Consensus 245 ~~~~~~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 245 IDAVNEGDSEQLSEHCKEFDN 265 (292)
T ss_dssp HHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHhcc
Confidence 66664 34556666665543
No 102
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.44 E-value=8.8e-07 Score=77.44 Aligned_cols=148 Identities=11% Similarity=0.007 Sum_probs=117.2
Q ss_pred hhhhcCChHHHHHHHHHhHHhC-CCCCC----HHHHHHHHHHHhcCCCHHHHHHHhh--------ccC-CC-ChhHHHHH
Q 043686 4 GYSLHGQRELGLSLFSELEKKS-SIEID----PLTFAAVLHACSTAGMVEEGWLCFN--------RIR-SP-KVTHHALM 68 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~-g~~p~----~~ty~~ll~a~~~~g~~~~a~~l~~--------~g~-~p-~~~~~~~l 68 (282)
.+...|++++|++.|++..+ . .-.|| ..+|..+-..+...|+.++|...+. .+- .| ...+++.+
T Consensus 112 ~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAES-KLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHT-TGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH-HHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 35678999999999999865 2 11233 3577888889999999999999998 111 22 24678899
Q ss_pred HHHHHccCChHHHHHHHHhcC-C---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHh-----cC-CCChhHHHHH
Q 043686 69 VSVLARAGLFDEARIFIQEYH-M---ERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCE-----LK-PLSAENYIML 134 (282)
Q Consensus 69 i~~~~~~g~~~~A~~l~~~m~-~---~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-p~~~~~~~~L 134 (282)
...|...|++++|.+.|++.. + .+| ..+|+.+...|...|++++|.+.|++... .. |..+.++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 999999999999999998843 1 122 35889999999999999999999999885 34 6566788999
Q ss_pred HHHHHHcCchhhhhcccc
Q 043686 135 SNWYAAEAKWDVVNQAYS 152 (282)
Q Consensus 135 i~~y~~~g~~~~A~~~~~ 152 (282)
...|.+.|++++|...+.
T Consensus 271 ~~~~~~~g~~~~A~~~~~ 288 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHS 288 (383)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 999999999999977443
No 103
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.44 E-value=6.2e-06 Score=69.42 Aligned_cols=144 Identities=6% Similarity=-0.130 Sum_probs=107.9
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCC-CCH----HHHHHHHHHHhcCCCHHHHHHHhh--cc-----CCCC--hhHHHHH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIE-IDP----LTFAAVLHACSTAGMVEEGWLCFN--RI-----RSPK--VTHHALM 68 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~-p~~----~ty~~ll~a~~~~g~~~~a~~l~~--~g-----~~p~--~~~~~~l 68 (282)
..+...|++++|++.+.+..+ ..-. ++. ..+..+...+...|++++|...+. .. ..+. ..+|+.+
T Consensus 83 ~~~~~~~~y~~A~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 2qfc_A 83 IMLCKQKRYKEIYNKVWNELK-KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHhc-cccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 457789999999999998776 3221 111 223345556778899999999987 11 1122 4488999
Q ss_pred HHHHHccCChHHHHHHHHhcC----CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------ChhHHHH
Q 043686 69 VSVLARAGLFDEARIFIQEYH----MERY-----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPL------SAENYIM 133 (282)
Q Consensus 69 i~~~~~~g~~~~A~~l~~~m~----~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~------~~~~~~~ 133 (282)
...|.+.|++++|.+.|++.. ..|+ ..+|+.+...|.+.|++++|.+.+++...+.+. ...+|..
T Consensus 162 g~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~ 241 (293)
T 2qfc_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999999999999998742 1232 268899999999999999999999998854221 1467888
Q ss_pred HHHHHHHcCchhhh
Q 043686 134 LSNWYAAEAKWDVV 147 (282)
Q Consensus 134 Li~~y~~~g~~~~A 147 (282)
+...|.+.|+.++|
T Consensus 242 lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 242 RGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHHTTCCHHH
T ss_pred HHHHHHHcCCcHHH
Confidence 99999999999888
No 104
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.43 E-value=1.5e-06 Score=66.50 Aligned_cols=115 Identities=8% Similarity=-0.087 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHH
Q 043686 30 DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGC 104 (282)
Q Consensus 30 ~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~ 104 (282)
+...+..+-..+.+.|++++|.+.|+ ..+.| +...|..+..+|.+.|++++|.+.|++.. +.|+ ...|..+...|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45577778888999999999999999 55556 57889999999999999999999999854 5665 88999999999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCChhHH--HHHHHHHHHcCch
Q 043686 105 RIHVQVKTGKRVIDQLCELKPLSAENY--IMLSNWYAAEAKW 144 (282)
Q Consensus 105 ~~~g~~~~A~~~~~~m~~~~p~~~~~~--~~Li~~y~~~g~~ 144 (282)
.+.|++++|.+.|++..++.|++...| ..+..+..+.+..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 131 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEA 131 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876644 3444444444443
No 105
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.43 E-value=1e-06 Score=67.22 Aligned_cols=101 Identities=11% Similarity=-0.045 Sum_probs=87.2
Q ss_pred CCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHH
Q 043686 27 IEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRAL 100 (282)
Q Consensus 27 ~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~l 100 (282)
+.|+. ..+..+-..+.+.|++++|...|+ ..+.| +...|..+..+|.+.|++++|.+.|++.. +.|+ ...|..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 44544 356667778999999999999999 66677 47889999999999999999999999864 5665 7899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686 101 LEGCRIHVQVKTGKRVIDQLCELKPLS 127 (282)
Q Consensus 101 i~~~~~~g~~~~A~~~~~~m~~~~p~~ 127 (282)
-.+|.+.|++++|.+.|++..++.|++
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 999999999999999999999999955
No 106
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.42 E-value=1.3e-06 Score=65.26 Aligned_cols=102 Identities=11% Similarity=-0.019 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhc
Q 043686 33 TFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIH 107 (282)
Q Consensus 33 ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~ 107 (282)
.+..+-..+.+.|++++|...|+ ....| +...|..+..+|.+.|++++|.+.|++.. ..|+ ...|..+..+|...
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 34445556777888888888887 44555 46677778888888888888888887754 4454 66777788888888
Q ss_pred CChhHHHHHHHHHHhcCCCChhHHHHH
Q 043686 108 VQVKTGKRVIDQLCELKPLSAENYIML 134 (282)
Q Consensus 108 g~~~~A~~~~~~m~~~~p~~~~~~~~L 134 (282)
|++++|.+.|+....+.|+++......
T Consensus 100 g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 100 GDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp TCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 888888888888887777665444433
No 107
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.41 E-value=1.5e-06 Score=65.07 Aligned_cols=98 Identities=9% Similarity=-0.052 Sum_probs=84.4
Q ss_pred ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHH
Q 043686 56 RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYI 132 (282)
Q Consensus 56 ~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ 132 (282)
..+.|+ ...+..+...+.+.|++++|.+.|++.. ..| +...|..+-.+|.+.|++++|...|++...+.|+++..+.
T Consensus 11 l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 90 (142)
T 2xcb_A 11 RGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF 90 (142)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence 345563 5567778888999999999999999864 456 5889999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCchhhhhcccce
Q 043686 133 MLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 133 ~Li~~y~~~g~~~~A~~~~~~ 153 (282)
.+..+|...|++++|...+..
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYS 111 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999765543
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.41 E-value=3.5e-06 Score=77.77 Aligned_cols=129 Identities=14% Similarity=0.011 Sum_probs=110.1
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCCh
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLF 78 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~ 78 (282)
..|.+.|++++|++.|++..+ ..|+ ...+..+-.++.+.|++++|.+.++ ....| +...+..+...|.+.|++
T Consensus 31 ~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 107 (568)
T 2vsy_A 31 DAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQA 107 (568)
T ss_dssp HHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Confidence 357788999999999999877 4454 6688888889999999999999999 45556 477899999999999999
Q ss_pred HHHHHHHHhcC-CCC-CHHHHHHHHHHHHhc---CChhHHHHHHHHHHhcCCCChhHHHHH
Q 043686 79 DEARIFIQEYH-MER-YPEVLRALLEGCRIH---VQVKTGKRVIDQLCELKPLSAENYIML 134 (282)
Q Consensus 79 ~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~p~~~~~~~~L 134 (282)
++|.+.|++.. ..| +..+|..+...|... |+.++|.+.+++..+..|.+...|..|
T Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 168 (568)
T 2vsy_A 108 EAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFL 168 (568)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHh
Confidence 99999999854 455 488999999999999 999999999999999988776666544
No 109
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.40 E-value=3.1e-06 Score=62.18 Aligned_cols=113 Identities=7% Similarity=-0.110 Sum_probs=87.8
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHH
Q 043686 29 IDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEG 103 (282)
Q Consensus 29 p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~ 103 (282)
.+...|..+-..+.+.|++++|...|. ....| +...|..+...|.+.|++++|.+.|++.. ..|+ ..+|..+...
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 466788888888999999999999998 44455 46788889999999999999999998854 4554 7888889999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHc
Q 043686 104 CRIHVQVKTGKRVIDQLCELKPL-----SAENYIMLSNWYAAE 141 (282)
Q Consensus 104 ~~~~g~~~~A~~~~~~m~~~~p~-----~~~~~~~Li~~y~~~ 141 (282)
|.+.|++++|...|++..++.|+ +......+.....+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998877665 334455554444333
No 110
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.40 E-value=3.8e-06 Score=61.09 Aligned_cols=107 Identities=9% Similarity=-0.102 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHh
Q 043686 32 LTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRI 106 (282)
Q Consensus 32 ~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~ 106 (282)
..|..+-..+.+.|++++|...|+ ....| +...|..+..+|.+.|++++|.+.|++.. ..|+ ..+|..+..+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 456666667788888888888888 44455 46788888888899999999999888854 4554 7788888888999
Q ss_pred cCChhHHHHHHHHHHhcC------CCChhHHHHHHHHH
Q 043686 107 HVQVKTGKRVIDQLCELK------PLSAENYIMLSNWY 138 (282)
Q Consensus 107 ~g~~~~A~~~~~~m~~~~------p~~~~~~~~Li~~y 138 (282)
.|++++|.+.|++..++. |.+......+....
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 999999999999888777 76655555554443
No 111
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.39 E-value=3.1e-06 Score=64.69 Aligned_cols=93 Identities=10% Similarity=-0.010 Sum_probs=84.0
Q ss_pred ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686 61 KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY 138 (282)
Q Consensus 61 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y 138 (282)
+...+..+...|.+.|++++|.+.|++.. ..| +...|..+..+|.+.|++++|...|++..++.|+++..|..+...|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45678889999999999999999999854 556 5889999999999999999999999999999999999999999999
Q ss_pred HHcCchhhhhcccce
Q 043686 139 AAEAKWDVVNQAYSW 153 (282)
Q Consensus 139 ~~~g~~~~A~~~~~~ 153 (282)
.+.|++++|...+..
T Consensus 90 ~~~g~~~~A~~~~~~ 104 (164)
T 3sz7_A 90 FDMADYKGAKEAYEK 104 (164)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHH
Confidence 999999999886554
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.39 E-value=4e-06 Score=70.61 Aligned_cols=125 Identities=7% Similarity=-0.101 Sum_probs=103.6
Q ss_pred CC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCCHHHHHHHH-H
Q 043686 29 ID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERYPEVLRALL-E 102 (282)
Q Consensus 29 p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~~~~~~~li-~ 102 (282)
|+ ...+..+-..+.+.|++++|...|+ ....| +...+..+...|.+.|++++|.+.+++.. ..|+........ .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 44 4566677778899999999999999 66667 46788999999999999999999999976 678755433333 3
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686 103 GCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 103 ~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
.+.+.++.++|.+.+++.....|+++..+..|...|...|++++|...+..
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~ 244 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFG 244 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 477889999999999999999999999999999999999999988664433
No 113
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.37 E-value=2.7e-06 Score=61.88 Aligned_cols=91 Identities=9% Similarity=-0.070 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 043686 62 VTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYA 139 (282)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~ 139 (282)
...|..+...+.+.|++++|.+.|++.. ..| +...|..+..+|.+.|++++|.+.|++..++.|+++..|..+...|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4567788899999999999999999854 455 58899999999999999999999999999999999999999999999
Q ss_pred HcCchhhhhcccc
Q 043686 140 AEAKWDVVNQAYS 152 (282)
Q Consensus 140 ~~g~~~~A~~~~~ 152 (282)
..|++++|...+.
T Consensus 84 ~~~~~~~A~~~~~ 96 (126)
T 3upv_A 84 AVKEYASALETLD 96 (126)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCHHHHHHHHH
Confidence 9999999876443
No 114
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.36 E-value=1e-06 Score=78.88 Aligned_cols=250 Identities=11% Similarity=-0.006 Sum_probs=149.5
Q ss_pred hhhhcCChHHHHHHHHHhHHh----CC--CCC-CHHHHHHHHHHHhcCCCHHHHHHHhh----------ccCCCC-hhHH
Q 043686 4 GYSLHGQRELGLSLFSELEKK----SS--IEI-DPLTFAAVLHACSTAGMVEEGWLCFN----------RIRSPK-VTHH 65 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~----~g--~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~----------~g~~p~-~~~~ 65 (282)
.|...|+.++|++.|++-.+- .+ ..| ...+|+.+-.+|...|++++|...++ ....++ ..+|
T Consensus 60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~ 139 (472)
T 4g1t_A 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD 139 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence 456789999999999875430 11 133 45789999999999999999999887 112222 4567
Q ss_pred HHHHHHHHcc--CChHHHHHHHHhcC-CCCC-HHHHHHHHHH---HHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686 66 ALMVSVLARA--GLFDEARIFIQEYH-MERY-PEVLRALLEG---CRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY 138 (282)
Q Consensus 66 ~~li~~~~~~--g~~~~A~~l~~~m~-~~p~-~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y 138 (282)
+.+..++.+. +++++|.+.|++.. +.|+ ...+..+... +...++.++|.+.+++..++.|+++.++..+...+
T Consensus 140 ~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~ 219 (472)
T 4g1t_A 140 CEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219 (472)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence 6666666554 46999999999854 5676 5566655554 44567888999999999999998888887776666
Q ss_pred HHc----CchhhhhcccceeeecC----eE-EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhh
Q 043686 139 AAE----AKWDVVNQAYSWIEFRN----KV-HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKW 209 (282)
Q Consensus 139 ~~~----g~~~~A~~~~~~~~~~~----~~-~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~ 209 (282)
.+. |+.++|.+.+....... .+ ..+-..+...|+.++|. ..+++..+ ..|+.......+..+-+.
T Consensus 220 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~----~~~~~al~--~~p~~~~~~~~lg~~y~~ 293 (472)
T 4g1t_A 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAI----ELLKKALE--YIPNNAYLHCQIGCCYRA 293 (472)
T ss_dssp HHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHH----HHHHHHHH--HSTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHH----HHHHHHHH--hCCChHHHHHHHHHHHHH
Confidence 554 45666666443211110 00 22333456677888887 44544432 346553322211111100
Q ss_pred --------------------hhhh-hhHHHHHHhhhccCCCCCeEEEeeccccccchHHHHHHHHHhhcce
Q 043686 210 --------------------TQIG-HSEILALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGE 259 (282)
Q Consensus 210 --------------------~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~ 259 (282)
.... ....+.....+.+........+-..+...|+.++|.+.|++..+.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 0000 1111112223333333322224455668899999999998876543
No 115
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.35 E-value=6.2e-06 Score=65.09 Aligned_cols=141 Identities=6% Similarity=-0.074 Sum_probs=104.8
Q ss_pred hhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-h----------------hHHH
Q 043686 6 SLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-V----------------THHA 66 (282)
Q Consensus 6 ~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~----------------~~~~ 66 (282)
...|.+++|.+.|+.-.. . -......+..+-..+.+.|++++|.+.|+ ..+.|+ . ..|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDE-E-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHH-H-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHH-H-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 344555555555543222 0 01123456667778889999999999998 333332 2 6888
Q ss_pred HHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCch
Q 043686 67 LMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKW 144 (282)
Q Consensus 67 ~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~ 144 (282)
.+..+|.+.|++++|.+.+++.. ..| +..+|..+..+|...|++++|.+.|++...+.|++...+..+...+...++.
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999854 455 5889999999999999999999999999999999989999999999998888
Q ss_pred hhhh
Q 043686 145 DVVN 148 (282)
Q Consensus 145 ~~A~ 148 (282)
+++.
T Consensus 173 ~~~~ 176 (198)
T 2fbn_A 173 RKKD 176 (198)
T ss_dssp HC--
T ss_pred HHHH
Confidence 8776
No 116
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.35 E-value=6.2e-06 Score=71.97 Aligned_cols=147 Identities=10% Similarity=-0.047 Sum_probs=116.6
Q ss_pred hhhcCChHHHHHHHHHhHHhCC-CCCC----HHHHHHHHHHHhcCCCHHHHHHHhh--------cc-CCC-ChhHHHHHH
Q 043686 5 YSLHGQRELGLSLFSELEKKSS-IEID----PLTFAAVLHACSTAGMVEEGWLCFN--------RI-RSP-KVTHHALMV 69 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g-~~p~----~~ty~~ll~a~~~~g~~~~a~~l~~--------~g-~~p-~~~~~~~li 69 (282)
+...|++++|+..|++..+ .- -.|| ..++..+-..+...|++++|...+. .+ ..+ ...+++.+.
T Consensus 111 ~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEK-ELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHT-TGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHH-HHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 4678999999999999865 21 1233 3467778888999999999999888 11 122 256788999
Q ss_pred HHHHccCChHHHHHHHHhcC-C---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCChhHHHHHHH
Q 043686 70 SVLARAGLFDEARIFIQEYH-M---ERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCE-----LKPLSAENYIMLSN 136 (282)
Q Consensus 70 ~~~~~~g~~~~A~~l~~~m~-~---~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~p~~~~~~~~Li~ 136 (282)
..|...|++++|.+.|++.. + .++ ..+++.|-..|...|++++|.+.|++... ..|..+.++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 99999999999999998743 1 122 45788899999999999999999999986 56766778889999
Q ss_pred HHHHcCchhhhhcccc
Q 043686 137 WYAAEAKWDVVNQAYS 152 (282)
Q Consensus 137 ~y~~~g~~~~A~~~~~ 152 (282)
.|.+.|+.++|...+.
T Consensus 270 ~~~~~g~~~~A~~~~~ 285 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIE 285 (378)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHH
Confidence 9999999999987443
No 117
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.35 E-value=4.6e-06 Score=60.52 Aligned_cols=92 Identities=9% Similarity=0.002 Sum_probs=82.1
Q ss_pred ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686 61 KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY 138 (282)
Q Consensus 61 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y 138 (282)
+...+..+...|.+.|++++|.+.|++.. ..| +..+|..+...|...|++++|.+.|++..+..|++...+..+...|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 46788899999999999999999999854 455 5889999999999999999999999999999999889999999999
Q ss_pred HHcCchhhhhcccc
Q 043686 139 AAEAKWDVVNQAYS 152 (282)
Q Consensus 139 ~~~g~~~~A~~~~~ 152 (282)
.+.|++++|...+.
T Consensus 95 ~~~~~~~~A~~~~~ 108 (133)
T 2lni_A 95 EAMKDYTKAMDVYQ 108 (133)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhhHHHHHHHHH
Confidence 99999888866443
No 118
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.35 E-value=5e-06 Score=68.56 Aligned_cols=146 Identities=10% Similarity=0.037 Sum_probs=111.1
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCC-CCCC-HHHHHHHHHHHhc--------CCCHHHHHHHhh--ccCCCC-hhHH----
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSS-IEID-PLTFAAVLHACST--------AGMVEEGWLCFN--RIRSPK-VTHH---- 65 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g-~~p~-~~ty~~ll~a~~~--------~g~~~~a~~l~~--~g~~p~-~~~~---- 65 (282)
..|.+.|++++|+..|++..+ .. -.|+ ...+..+-.++.+ .|++++|...|+ ....|+ ....
T Consensus 60 ~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 138 (261)
T 3qky_A 60 RAYYQNKEYLLAASEYERFIQ-IYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQ 138 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHH-HCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHH
Confidence 457889999999999999887 32 1223 3456666667777 999999999999 444454 3444
Q ss_pred -------------HHHHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhc----------CChhHHHHHH
Q 043686 66 -------------ALMVSVLARAGLFDEARIFIQEYH-MERY----PEVLRALLEGCRIH----------VQVKTGKRVI 117 (282)
Q Consensus 66 -------------~~li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~li~~~~~~----------g~~~~A~~~~ 117 (282)
..+...|.+.|++++|.+.|++.. ..|+ ...+..+..+|.+. |++++|...|
T Consensus 139 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~ 218 (261)
T 3qky_A 139 KIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELY 218 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHH
Confidence 455788999999999999999864 3454 45788888888866 8999999999
Q ss_pred HHHHhcCCCCh---hHHHHHHHHHHHcCchhhhhc
Q 043686 118 DQLCELKPLSA---ENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 118 ~~m~~~~p~~~---~~~~~Li~~y~~~g~~~~A~~ 149 (282)
++..+..|+++ .+...+-..+.+.++++++..
T Consensus 219 ~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~ 253 (261)
T 3qky_A 219 ERLLQIFPDSPLLRTAEELYTRARQRLTELEGDAS 253 (261)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 99999999774 345566777777777776654
No 119
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.34 E-value=5.8e-06 Score=60.67 Aligned_cols=91 Identities=10% Similarity=-0.089 Sum_probs=81.6
Q ss_pred ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686 61 KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY 138 (282)
Q Consensus 61 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y 138 (282)
+...|..+...|.+.|++++|...|++.. ..|+ ...|..+...|.+.|++++|...|++.....|+++..|..+...|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 57788999999999999999999999854 4554 889999999999999999999999999999999999999999999
Q ss_pred HHcCchhhhhccc
Q 043686 139 AAEAKWDVVNQAY 151 (282)
Q Consensus 139 ~~~g~~~~A~~~~ 151 (282)
...|++++|...+
T Consensus 88 ~~~~~~~~A~~~~ 100 (137)
T 3q49_B 88 LEMESYDEAIANL 100 (137)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHHhhHHHHHHHH
Confidence 9999988886544
No 120
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.33 E-value=5.5e-06 Score=58.53 Aligned_cols=93 Identities=11% Similarity=0.012 Sum_probs=81.6
Q ss_pred ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686 61 KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY 138 (282)
Q Consensus 61 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y 138 (282)
+...+..+...+...|++++|.+.|++.. ..| +...|..+...|.+.|++++|...+++..+..|+++..+..+...|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45678888999999999999999999864 345 6889999999999999999999999999999998889999999999
Q ss_pred HHcCchhhhhcccce
Q 043686 139 AAEAKWDVVNQAYSW 153 (282)
Q Consensus 139 ~~~g~~~~A~~~~~~ 153 (282)
.+.|++++|...+..
T Consensus 83 ~~~~~~~~A~~~~~~ 97 (118)
T 1elw_A 83 EFLNRFEEAKRTYEE 97 (118)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHH
Confidence 999999888764443
No 121
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.33 E-value=2.6e-06 Score=60.11 Aligned_cols=96 Identities=9% Similarity=-0.044 Sum_probs=82.7
Q ss_pred CChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------hhHH
Q 043686 60 PKVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS------AENY 131 (282)
Q Consensus 60 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~------~~~~ 131 (282)
++...+..+...+.+.|++++|.+.|++.. ..| +..+|..+..+|.+.|++++|.+.|++..++.|++ ...+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 456778889999999999999999999854 455 58899999999999999999999999999999987 6778
Q ss_pred HHHHHHHHHcCchhhhhcccceee
Q 043686 132 IMLSNWYAAEAKWDVVNQAYSWIE 155 (282)
Q Consensus 132 ~~Li~~y~~~g~~~~A~~~~~~~~ 155 (282)
..+...+...|+.++|...+..++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHhHhhhHhHHHHhH
Confidence 888888999999998888766543
No 122
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.31 E-value=3.8e-06 Score=58.87 Aligned_cols=88 Identities=6% Similarity=-0.108 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--ChhHHHHHHHH
Q 043686 62 VTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPL--SAENYIMLSNW 137 (282)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~--~~~~~~~Li~~ 137 (282)
...+..+...|.+.|++++|...|++.. ..| +..+|..+...|.+.|++++|.+.|++..+..|. +...+..+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444555555555555555555555532 222 3455555555555555566665555555555555 55555555555
Q ss_pred HHHc-Cchhhhhc
Q 043686 138 YAAE-AKWDVVNQ 149 (282)
Q Consensus 138 y~~~-g~~~~A~~ 149 (282)
|.+. |++++|.+
T Consensus 86 ~~~~~~~~~~A~~ 98 (112)
T 2kck_A 86 LRYIEGKEVEAEI 98 (112)
T ss_dssp HTTCSSCSHHHHH
T ss_pred HHHHhCCHHHHHH
Confidence 5555 55555544
No 123
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.31 E-value=3.1e-06 Score=61.69 Aligned_cols=88 Identities=11% Similarity=-0.040 Sum_probs=70.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 043686 64 HHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAE 141 (282)
Q Consensus 64 ~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~ 141 (282)
.+..+...+.+.|++++|...|++.. ..| +...|..+-..+.+.|++++|...|++..++.|+++..+..|...|.+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45556677788888888888888754 455 4778888888888888888888888888888888888888888888888
Q ss_pred Cchhhhhccc
Q 043686 142 AKWDVVNQAY 151 (282)
Q Consensus 142 g~~~~A~~~~ 151 (282)
|++++|...+
T Consensus 99 g~~~~A~~~~ 108 (121)
T 1hxi_A 99 HNANAALASL 108 (121)
T ss_dssp HHHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 8888886644
No 124
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.31 E-value=6e-06 Score=64.78 Aligned_cols=145 Identities=10% Similarity=-0.074 Sum_probs=106.2
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--------ccCCC-ChhHHHHHHHHHHcc
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--------RIRSP-KVTHHALMVSVLARA 75 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--------~g~~p-~~~~~~~li~~~~~~ 75 (282)
....|++++|.++++.... . ......++..+-..+...|++++|...++ .+..| ...++..+...|...
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-H-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp -----CHHHHHHHHHHHHT-S-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHHHHhcC-C-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 4568999999996655543 1 22355688888889999999999999998 33444 356788999999999
Q ss_pred CChHHHHHHHHhcC-C---CC-C----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCC----hhHHHHHHHHHHH
Q 043686 76 GLFDEARIFIQEYH-M---ER-Y----PEVLRALLEGCRIHVQVKTGKRVIDQLCELK--PLS----AENYIMLSNWYAA 140 (282)
Q Consensus 76 g~~~~A~~l~~~m~-~---~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--p~~----~~~~~~Li~~y~~ 140 (282)
|++++|.+.|++.. . .| + ..+++.+...+...|++++|.+.+++..... ..+ ..++..+...|..
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 99999999998743 1 22 2 4568888899999999999999999987431 112 2345788888999
Q ss_pred cCchhhhhccc
Q 043686 141 EAKWDVVNQAY 151 (282)
Q Consensus 141 ~g~~~~A~~~~ 151 (282)
.|++++|...+
T Consensus 160 ~g~~~~A~~~~ 170 (203)
T 3gw4_A 160 EKNLLEAQQHW 170 (203)
T ss_dssp TTCHHHHHHHH
T ss_pred CcCHHHHHHHH
Confidence 99988886533
No 125
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.30 E-value=1.6e-06 Score=67.00 Aligned_cols=110 Identities=12% Similarity=0.093 Sum_probs=89.3
Q ss_pred hcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHH-HHhcCCh--hHH
Q 043686 42 STAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEG-CRIHVQV--KTG 113 (282)
Q Consensus 42 ~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~-~~~~g~~--~~A 113 (282)
...|++++|...++ ....| +...|..+...|...|++++|.+.|++.. ..| +...|..+... |.+.|++ ++|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 45677888888887 34445 57889999999999999999999999864 445 57888888888 8899998 999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686 114 KRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 114 ~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
...|++..+..|+++..+..+...|.+.|++++|...+
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 138 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW 138 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHH
Confidence 99999999999999899999999999999988885544
No 126
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.30 E-value=1.5e-06 Score=75.57 Aligned_cols=147 Identities=12% Similarity=0.024 Sum_probs=84.6
Q ss_pred hhhhhcCChHHHHHHHHHhHHh---CCCC-CCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC---C----hhHHHHHH
Q 043686 3 LGYSLHGQRELGLSLFSELEKK---SSIE-IDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP---K----VTHHALMV 69 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~---~g~~-p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p---~----~~~~~~li 69 (282)
..|...|++++|+..|++.... .+-. ....++..+-..+...|++++|...++ ..+.| + ..++..+.
T Consensus 55 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 134 (406)
T 3sf4_A 55 NAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLG 134 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 3456667777777776664330 1111 236667777777777777777776666 11111 1 33566666
Q ss_pred HHHHccCC--------------------hHHHHHHHHhcC-----C--CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 70 SVLARAGL--------------------FDEARIFIQEYH-----M--ERY-PEVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 70 ~~~~~~g~--------------------~~~A~~l~~~m~-----~--~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
..|...|+ +++|.+.+++.. . .|. ..+|+.+...|...|++++|.+.+++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 66666777 666666665531 1 111 3456666666777777777777777666
Q ss_pred hcCCCC------hhHHHHHHHHHHHcCchhhhhc
Q 043686 122 ELKPLS------AENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 122 ~~~p~~------~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
++.|.. ..++..+...|...|++++|..
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 432211 1256666666777777776666
No 127
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.30 E-value=4.8e-06 Score=60.04 Aligned_cols=111 Identities=6% Similarity=-0.009 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-C----CCC----HHHHH
Q 043686 31 PLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-M----ERY----PEVLR 98 (282)
Q Consensus 31 ~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~----~p~----~~~~~ 98 (282)
...|..+-..+...|++++|...|+ ....| +...+..+...|.+.|++++|...|++.. . .++ ..+|.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3466777778888999999999998 33334 57788889999999999999999998853 2 223 77888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 043686 99 ALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEA 142 (282)
Q Consensus 99 ~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g 142 (282)
.+...|.+.|++++|.+.|++.....| +......+...+...+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 899999999999999999999998888 5566666666554443
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.29 E-value=1.2e-05 Score=60.78 Aligned_cols=117 Identities=7% Similarity=-0.118 Sum_probs=94.4
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD 79 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~ 79 (282)
..+.+.|++++|+..|.+..+ .. +.+..++..+...+...|++++|...++ ....| +...|..+...|.+.|+++
T Consensus 21 ~~~~~~~~~~~A~~~~~~al~-~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~ 98 (166)
T 1a17_A 21 NDYFKAKDYENAIKFYSQAIE-LN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 98 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHccCHHHHHHHHHHHHH-hC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHH
Confidence 356789999999999999876 32 2357788888889999999999999999 44455 5778999999999999999
Q ss_pred HHHHHHHhcC-CCC-CHHHHHHHHH--HHHhcCChhHHHHHHHHHH
Q 043686 80 EARIFIQEYH-MER-YPEVLRALLE--GCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 80 ~A~~l~~~m~-~~p-~~~~~~~li~--~~~~~g~~~~A~~~~~~m~ 121 (282)
+|.+.|++.. ..| +...+..+.. .+.+.|++++|.+.+....
T Consensus 99 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 99 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999864 444 4556644444 4888899999999999876
No 129
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.28 E-value=1e-06 Score=74.99 Aligned_cols=150 Identities=6% Similarity=-0.079 Sum_probs=105.9
Q ss_pred hhhhhcCChHHHHHHHHHhHHh---CCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--------ccCCC-ChhHHHHHH
Q 043686 3 LGYSLHGQRELGLSLFSELEKK---SSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--------RIRSP-KVTHHALMV 69 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~---~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--------~g~~p-~~~~~~~li 69 (282)
..|...|++++|.+.|.+..+- .|-.+. ..+|+.+...|.+.|++++|.+.|+ .|-.+ -..+++.+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3466778888888888876540 111111 3477888888888999999888887 12111 145778888
Q ss_pred HHHHccCChHHHHHHHHhcC-CCC---C----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------hhHHHHHH
Q 043686 70 SVLARAGLFDEARIFIQEYH-MER---Y----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS------AENYIMLS 135 (282)
Q Consensus 70 ~~~~~~g~~~~A~~l~~~m~-~~p---~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~------~~~~~~Li 135 (282)
..|.+ |++++|.+.|++.. +.| + ..+|+.+...|.+.|++++|.+.|++...+.|.+ ..++..+.
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 88888 99999999998743 111 1 4678888889999999999999999988654322 12566666
Q ss_pred HHHHHcCchhhhhcccce
Q 043686 136 NWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 136 ~~y~~~g~~~~A~~~~~~ 153 (282)
..|...|++++|...+..
T Consensus 203 ~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 777777888888775554
No 130
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.28 E-value=3e-06 Score=76.88 Aligned_cols=112 Identities=7% Similarity=-0.032 Sum_probs=89.5
Q ss_pred HhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHH
Q 043686 41 CSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKR 115 (282)
Q Consensus 41 ~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~ 115 (282)
+.+.|++++|.+.|+ ....|+ ...|..+..+|.+.|++++|.+.+++.. ..|+ ..+|..+..+|.+.|++++|.+
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 455677777777776 344453 6788889999999999999999998854 5665 8899999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHH--HHHcCchhhhhcccc
Q 043686 116 VIDQLCELKPLSAENYIMLSNW--YAAEAKWDVVNQAYS 152 (282)
Q Consensus 116 ~~~~m~~~~p~~~~~~~~Li~~--y~~~g~~~~A~~~~~ 152 (282)
.|++..++.|++...+..+..+ |.+.|++++|.+.+.
T Consensus 96 ~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 96 DYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999888888887777 888899999998665
No 131
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=1e-05 Score=59.86 Aligned_cols=93 Identities=9% Similarity=-0.073 Sum_probs=83.2
Q ss_pred ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHH
Q 043686 61 KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLS 135 (282)
Q Consensus 61 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li 135 (282)
+...+..+...+.+.|++++|.+.|++.. ..|+ ..+|..+...|.+.|++++|.+.+++..+..|+++..+..+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 56788899999999999999999999854 6787 688999999999999999999999999999998888999999
Q ss_pred HHHHHcCchhhhhcccce
Q 043686 136 NWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 136 ~~y~~~g~~~~A~~~~~~ 153 (282)
..|...|++++|...+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~ 124 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQR 124 (148)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 999999999999775543
No 132
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.27 E-value=5.3e-06 Score=58.14 Aligned_cols=96 Identities=11% Similarity=-0.083 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC---CHHHHHHHHHHH
Q 043686 32 LTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MER---YPEVLRALLEGC 104 (282)
Q Consensus 32 ~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p---~~~~~~~li~~~ 104 (282)
..+..+-..+.+.|++++|...|+ ....| +...|..+...|.+.|++++|.+.|++.. ..| +..+|..+...|
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 456667777888999999999998 33444 56788899999999999999999999854 455 488999999999
Q ss_pred Hhc-CChhHHHHHHHHHHhcCCCC
Q 043686 105 RIH-VQVKTGKRVIDQLCELKPLS 127 (282)
Q Consensus 105 ~~~-g~~~~A~~~~~~m~~~~p~~ 127 (282)
.+. |++++|.+.+++.....|++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCC
Confidence 999 99999999999999888855
No 133
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.26 E-value=4.3e-06 Score=75.39 Aligned_cols=119 Identities=7% Similarity=0.006 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC----------------hhHHHHHHHHHHccCChHHHHHHHHhcC-CC
Q 043686 31 PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK----------------VTHHALMVSVLARAGLFDEARIFIQEYH-ME 91 (282)
Q Consensus 31 ~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~----------------~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~ 91 (282)
...|..+-..+.+.|++++|...|+ ..+.|+ ...|..+..+|.+.|++++|.+.|++.. +.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3467777888999999999999999 444454 4789999999999999999999999854 55
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 92 R-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 92 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
| +..+|..+-.+|.+.|++++|...|++..++.|++...+..+..++.+.++.++|.+
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 488999999999999999999999999999999999999999999999999888765
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.25 E-value=9.1e-06 Score=58.45 Aligned_cols=92 Identities=8% Similarity=-0.043 Sum_probs=80.9
Q ss_pred ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686 61 KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY 138 (282)
Q Consensus 61 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y 138 (282)
+...+..+...+...|++++|.+.|++.. ..| +..+|..+...|...|++++|.+.+++.....|+++..+..+...|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45678889999999999999999999864 344 5889999999999999999999999999999998888999999999
Q ss_pred HHcCchhhhhcccc
Q 043686 139 AAEAKWDVVNQAYS 152 (282)
Q Consensus 139 ~~~g~~~~A~~~~~ 152 (282)
.+.|++++|...+.
T Consensus 91 ~~~~~~~~A~~~~~ 104 (131)
T 2vyi_A 91 SSLNKHVEAVAYYK 104 (131)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHH
Confidence 99999888866443
No 135
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.25 E-value=5.5e-05 Score=60.54 Aligned_cols=141 Identities=7% Similarity=-0.079 Sum_probs=106.4
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCC----CHHHHHHHhhccCCC-ChhHHHHHHHHHHc----
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAG----MVEEGWLCFNRIRSP-KVTHHALMVSVLAR---- 74 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g----~~~~a~~l~~~g~~p-~~~~~~~li~~~~~---- 74 (282)
.|...+++++|++.|++..+ .| +...+..|-..|.. + +.++|.++|+....+ +...+..|-..|..
T Consensus 27 ~~~~~~~~~~A~~~~~~a~~-~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~ 101 (212)
T 3rjv_A 27 TWVSSGDYQKAEYWAQKAAA-QG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAG 101 (212)
T ss_dssp HHHHHTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGS
T ss_pred HHhcCCCHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence 45567899999999999887 54 55667777777777 6 899999999833333 46677788888877
Q ss_pred cCChHHHHHHHHhcC-CCCC---HHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC----
Q 043686 75 AGLFDEARIFIQEYH-MERY---PEVLRALLEGCRI----HVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEA---- 142 (282)
Q Consensus 75 ~g~~~~A~~l~~~m~-~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g---- 142 (282)
.++.++|.+.|++.- ..|. ..+++.|-..|.. .++.++|.+.|++.... |.++..+..|-.+|.+..
T Consensus 102 ~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~ 180 (212)
T 3rjv_A 102 ATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFI 180 (212)
T ss_dssp SCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTB
T ss_pred ccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCC
Confidence 789999999998854 4443 7888888888888 78899999999998877 445578888888887642
Q ss_pred --chhhhhcc
Q 043686 143 --KWDVVNQA 150 (282)
Q Consensus 143 --~~~~A~~~ 150 (282)
+.++|...
T Consensus 181 ~~d~~~A~~~ 190 (212)
T 3rjv_A 181 EPNKQKALHW 190 (212)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 55555443
No 136
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.24 E-value=1.9e-06 Score=62.17 Aligned_cols=88 Identities=6% Similarity=-0.089 Sum_probs=64.9
Q ss_pred CCCHHHHHHHhh--ccC---CC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHH
Q 043686 44 AGMVEEGWLCFN--RIR---SP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKR 115 (282)
Q Consensus 44 ~g~~~~a~~l~~--~g~---~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~ 115 (282)
.|++++|...|+ ... .| +...+..+...|.+.|++++|.+.|++.. ..|+ ..+|..+..+|.+.|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 355555555555 223 24 35677888888999999999999998854 4554 7888889999999999999999
Q ss_pred HHHHHHhcCCCChhHH
Q 043686 116 VIDQLCELKPLSAENY 131 (282)
Q Consensus 116 ~~~~m~~~~p~~~~~~ 131 (282)
.|++.....|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 9999998888775443
No 137
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.22 E-value=1.3e-05 Score=62.08 Aligned_cols=118 Identities=8% Similarity=-0.048 Sum_probs=91.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCCHHHHHHHHHH-HHhcC
Q 043686 34 FAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MERYPEVLRALLEG-CRIHV 108 (282)
Q Consensus 34 y~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~~~~~~~li~~-~~~~g 108 (282)
+...-..+.+.|++++|...|+ ....|+ ...+..+...|.+.|++++|.+.|++.. ..|+...+..+... +.+.+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhc
Confidence 4455567888999999999999 555664 6788999999999999999999999975 55654433332211 23334
Q ss_pred ChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686 109 QVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 109 ~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
...+|...+++.....|+++..+..+...|...|++++|...+
T Consensus 89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4556899999999999999999999999999999988885533
No 138
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.20 E-value=6.2e-06 Score=71.21 Aligned_cols=116 Identities=9% Similarity=-0.077 Sum_probs=99.6
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCC----------------HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-Chh
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEID----------------PLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVT 63 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~----------------~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~ 63 (282)
..|.+.|++++|+..|++..+ +.|+ ...|..+-.++.+.|++++|...++ ..+.| +..
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~ 231 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVS---WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK 231 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH---HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH---HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 357789999999999999887 4455 4789999999999999999999999 55566 578
Q ss_pred HHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 043686 64 HHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTG-KRVIDQLC 121 (282)
Q Consensus 64 ~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 121 (282)
.|..+..+|.+.|++++|.+.|++.. +.|+ ..+|..+...+.+.|+.++| ...|+.|.
T Consensus 232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 232 GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999864 5664 78999999999999999998 55777776
No 139
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.20 E-value=1.5e-06 Score=76.21 Aligned_cols=189 Identities=8% Similarity=-0.050 Sum_probs=134.2
Q ss_pred hhhhhcCChHHHHHHHHHhHHh---CCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--------ccCCC-ChhHHHHHH
Q 043686 3 LGYSLHGQRELGLSLFSELEKK---SSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--------RIRSP-KVTHHALMV 69 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~---~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--------~g~~p-~~~~~~~li 69 (282)
..|...|++++|++.|++..+. .+-.| ...++..+-..+...|++++|...++ .+-.| ...++..+.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 173 (411)
T 4a1s_A 94 NAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLG 173 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 4577899999999999987651 11122 33567778888999999999999998 22233 256888999
Q ss_pred HHHHccCC-----------------hHHHHHHHHhcC-------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 043686 70 SVLARAGL-----------------FDEARIFIQEYH-------MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELK 124 (282)
Q Consensus 70 ~~~~~~g~-----------------~~~A~~l~~~m~-------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 124 (282)
..|...|+ +++|.+.+++.. -.|. ..+|..+...|...|++++|.+.|++...+.
T Consensus 174 ~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (411)
T 4a1s_A 174 NVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA 253 (411)
T ss_dssp HHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 99999999 999999887742 1122 4588889999999999999999999998654
Q ss_pred CCC------hhHHHHHHHHHHHcCchhhhhcccceeee----cC-------eEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 043686 125 PLS------AENYIMLSNWYAAEAKWDVVNQAYSWIEF----RN-------KVHVFGTGDVSCPRSEGIFWELQSLMKKM 187 (282)
Q Consensus 125 p~~------~~~~~~Li~~y~~~g~~~~A~~~~~~~~~----~~-------~~~~~i~~~~~~~~~~~a~~~~~~l~~~M 187 (282)
|.. ..++..+...|...|++++|...+..... .+ ....+-..+...|+.++|...+++.+...
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 322 23788999999999999999984433211 00 01223344567888898885554444444
Q ss_pred HhCC
Q 043686 188 EGDS 191 (282)
Q Consensus 188 ~~~g 191 (282)
...+
T Consensus 334 ~~~~ 337 (411)
T 4a1s_A 334 QELG 337 (411)
T ss_dssp HHHT
T ss_pred HHCC
Confidence 3333
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.20 E-value=1.3e-05 Score=67.33 Aligned_cols=129 Identities=12% Similarity=-0.022 Sum_probs=102.8
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-ccCCCC----hhHHHHHHHHHHccCC
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-RIRSPK----VTHHALMVSVLARAGL 77 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-~g~~p~----~~~~~~li~~~~~~g~ 77 (282)
..+...|++++|.++|..+.. . .|+....-.+-..+.+.+++++|...|+ .+-.|+ ...+..+-.++.+.|+
T Consensus 110 ~~L~~~g~y~eA~~~l~~~~~-~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~ 186 (282)
T 4f3v_A 110 ACEAAQGNYADAMEALEAAPV-A--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL 186 (282)
T ss_dssp HHHHHHTCHHHHHHHHTSSCC-T--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHh-c--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC
Confidence 457889999999999999876 3 4766555555557889999999999999 332232 2367888999999999
Q ss_pred hHHHHHHHHhcC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHH
Q 043686 78 FDEARIFIQEYH---MERY--PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLS 135 (282)
Q Consensus 78 ~~~A~~l~~~m~---~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li 135 (282)
+++|++.|++.. ..|. ...+..+-.++.+.|+.++|..+|+++....|+ ...+..|.
T Consensus 187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 999999999863 2254 447778888999999999999999999999997 67666663
No 141
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.20 E-value=1.9e-06 Score=72.47 Aligned_cols=187 Identities=10% Similarity=-0.039 Sum_probs=125.7
Q ss_pred hhhhhcCChHHHHHHHHHhHHh---CCC-CCCHHHHHHHHHHHhcCCCHHHHHHHhh--------ccCCCC-hhHHHHHH
Q 043686 3 LGYSLHGQRELGLSLFSELEKK---SSI-EIDPLTFAAVLHACSTAGMVEEGWLCFN--------RIRSPK-VTHHALMV 69 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~---~g~-~p~~~ty~~ll~a~~~~g~~~~a~~l~~--------~g~~p~-~~~~~~li 69 (282)
..|...|++++|++.|++.... .+- .....++..+-..+...|++++|.+.++ .+-.+. ..++..+.
T Consensus 51 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 130 (338)
T 3ro2_A 51 NAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLG 130 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 4677889999999988874211 222 2348888889999999999999998888 111111 34778888
Q ss_pred HHHHccCC--------------------hHHHHHHHHhcC-------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 70 SVLARAGL--------------------FDEARIFIQEYH-------MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 70 ~~~~~~g~--------------------~~~A~~l~~~m~-------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
..|...|+ +++|.+.+++.. -.|. ..+|..+...|...|++++|.+.+++..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 210 (338)
T 3ro2_A 131 NVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 210 (338)
T ss_dssp HHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 88888888 888888887642 1122 4578888888999999999999999887
Q ss_pred hcCCC------ChhHHHHHHHHHHHcCchhhhhcccceee----ecC-------eEEEEecCCCCCCChHHHHHHHHHHH
Q 043686 122 ELKPL------SAENYIMLSNWYAAEAKWDVVNQAYSWIE----FRN-------KVHVFGTGDVSCPRSEGIFWELQSLM 184 (282)
Q Consensus 122 ~~~p~------~~~~~~~Li~~y~~~g~~~~A~~~~~~~~----~~~-------~~~~~i~~~~~~~~~~~a~~~~~~l~ 184 (282)
...|. ...++..+...|...|++++|...+.... ..+ ....+-..+...|+.++|...+++.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 211 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44221 12377888888999999999887443211 110 00223334566788888885554444
Q ss_pred HHHHh
Q 043686 185 KKMEG 189 (282)
Q Consensus 185 ~~M~~ 189 (282)
.....
T Consensus 291 ~~~~~ 295 (338)
T 3ro2_A 291 AIAQE 295 (338)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44433
No 142
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.18 E-value=2.8e-05 Score=56.22 Aligned_cols=98 Identities=11% Similarity=-0.044 Sum_probs=74.2
Q ss_pred HHHHHhcCCCHHHHHHHhh--ccCCCCh----hHHHHHHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHHHHHHH
Q 043686 37 VLHACSTAGMVEEGWLCFN--RIRSPKV----THHALMVSVLARAGLFDEARIFIQEYH-MERY----PEVLRALLEGCR 105 (282)
Q Consensus 37 ll~a~~~~g~~~~a~~l~~--~g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~li~~~~ 105 (282)
+-..+.+.|++++|...|+ ....|+. ..+..+...|.+.|++++|.+.|++.. ..|+ ..++..+..+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 3345667788888888887 3334443 377778888999999999999998854 3444 567888888999
Q ss_pred hcCChhHHHHHHHHHHhcCCCChhHHHHH
Q 043686 106 IHVQVKTGKRVIDQLCELKPLSAENYIML 134 (282)
Q Consensus 106 ~~g~~~~A~~~~~~m~~~~p~~~~~~~~L 134 (282)
+.|++++|...|++.....|++.......
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 99999999999999998889775554443
No 143
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.18 E-value=5.4e-06 Score=60.87 Aligned_cols=89 Identities=6% Similarity=-0.028 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChh-------HHH
Q 043686 62 VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAE-------NYI 132 (282)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~-------~~~ 132 (282)
...+..|...|.+.|++++|.+.|++.. +.|+ ..+|+.+-.+|.+.|++++|.+.|++..++.|.+.. +|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 4567789999999999999999999854 5665 889999999999999999999999999988775543 445
Q ss_pred HHHHHHHHcCchhhhhcc
Q 043686 133 MLSNWYAAEAKWDVVNQA 150 (282)
Q Consensus 133 ~Li~~y~~~g~~~~A~~~ 150 (282)
.+...|...|++++|.+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~ 105 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQW 105 (127)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHH
Confidence 555666666666666553
No 144
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.18 E-value=1.4e-05 Score=70.02 Aligned_cols=118 Identities=8% Similarity=-0.079 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhh--cc----------------CCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CC
Q 043686 32 LTFAAVLHACSTAGMVEEGWLCFN--RI----------------RSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-ME 91 (282)
Q Consensus 32 ~ty~~ll~a~~~~g~~~~a~~l~~--~g----------------~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~ 91 (282)
..+..+-..+.+.|++++|.+.|+ .. ..| +...|..+..+|.+.|++++|.+.+++.. ..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 346667778888999999999888 22 445 36788999999999999999999999854 66
Q ss_pred CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 92 RY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 92 p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
|+ ..+|..+-.+|.+.|++++|.+.|++..++.|++...+..|...+.+.++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 88999999999999999999999999999999998899999999999999888865
No 145
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.16 E-value=1.2e-05 Score=61.31 Aligned_cols=115 Identities=12% Similarity=-0.029 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhh--ccC------------------CC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-
Q 043686 32 LTFAAVLHACSTAGMVEEGWLCFN--RIR------------------SP-KVTHHALMVSVLARAGLFDEARIFIQEYH- 89 (282)
Q Consensus 32 ~ty~~ll~a~~~~g~~~~a~~l~~--~g~------------------~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~- 89 (282)
..+...-..+.+.|++++|...|. ..+ .| +...|..+..+|.+.|++++|...+++..
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 345555566777777777777777 222 23 24678899999999999999999999854
Q ss_pred CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHcCchhh
Q 043686 90 MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSA-ENYIMLSNWYAAEAKWDV 146 (282)
Q Consensus 90 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~-~~~~~Li~~y~~~g~~~~ 146 (282)
..|+ ..+|..+..+|...|++++|...|++...+.|++. .....|-....+.+...+
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~ 150 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKA 150 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5565 88999999999999999999999999999999876 344455454444444333
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.15 E-value=1e-05 Score=59.41 Aligned_cols=101 Identities=9% Similarity=0.006 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-C----CCC----HHHHHH
Q 043686 32 LTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-M----ERY----PEVLRA 99 (282)
Q Consensus 32 ~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~----~p~----~~~~~~ 99 (282)
.++..+-..+.+.|++++|.+.|+ ..+.|+ ...|+.+-.+|.+.|++++|.+.|++.. + .++ ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 466777788899999999999998 556674 7788999999999999999999998743 2 222 347888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHH
Q 043686 100 LLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIM 133 (282)
Q Consensus 100 li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~ 133 (282)
+-..|...|++++|.+.|++.....| ++.+...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~ 121 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKK 121 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHHH
Confidence 88899999999999999999988887 4454443
No 147
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.14 E-value=5.3e-06 Score=72.40 Aligned_cols=58 Identities=3% Similarity=-0.095 Sum_probs=25.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHHhcC------CC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 64 HHALMVSVLARAGLFDEARIFIQEYH------ME-RY-PEVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 64 ~~~~li~~~~~~g~~~~A~~l~~~m~------~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
++..+...|.+.|++++|.+.|++.. -. |+ ..++..+...|.+.|++++|.+.+++..
T Consensus 226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444444444455444444444321 01 22 3344444444444455555544444444
No 148
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.10 E-value=7.5e-05 Score=64.60 Aligned_cols=148 Identities=8% Similarity=-0.080 Sum_probs=110.4
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCHH----HHHHHHHHHhcCCCHHHHHHHhh--ccC---CCC----hhHHHHHHH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDPL----TFAAVLHACSTAGMVEEGWLCFN--RIR---SPK----VTHHALMVS 70 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~----ty~~ll~a~~~~g~~~~a~~l~~--~g~---~p~----~~~~~~li~ 70 (282)
.+...|++++|...+++... ..-..+.. +++.+-..+...|++++|.+.++ ..+ .++ ..++..+..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALE-ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-TCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 35678999999999999776 43222222 45566667888999999999998 111 111 234677888
Q ss_pred HHHccCChHHHHHHHHhcC------CC---CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----ChhHHHHHH
Q 043686 71 VLARAGLFDEARIFIQEYH------ME---RY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPL-----SAENYIMLS 135 (282)
Q Consensus 71 ~~~~~g~~~~A~~l~~~m~------~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~-----~~~~~~~Li 135 (282)
.|...|++++|.+.+++.. .. |. ..+++.+...|...|++++|.+.+++.....|. ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 8999999999999998742 11 33 456777888999999999999999999865442 234678888
Q ss_pred HHHHHcCchhhhhcccc
Q 043686 136 NWYAAEAKWDVVNQAYS 152 (282)
Q Consensus 136 ~~y~~~g~~~~A~~~~~ 152 (282)
..|...|++++|...+.
T Consensus 182 ~~~~~~g~~~~A~~~l~ 198 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLN 198 (373)
T ss_dssp HHHHHHTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 99999999999988443
No 149
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.09 E-value=5.3e-06 Score=72.41 Aligned_cols=150 Identities=11% Similarity=0.016 Sum_probs=111.0
Q ss_pred hhhhhcCChHHHHHHHHHhHHhC---C-CCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--------ccCCCC-hhHHHHH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKS---S-IEI-DPLTFAAVLHACSTAGMVEEGWLCFN--------RIRSPK-VTHHALM 68 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~---g-~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--------~g~~p~-~~~~~~l 68 (282)
..|...|++++|+..|.+..+-. + ..| ...+++.+-..|...|++++|.+.|+ .+-.+. ..++..|
T Consensus 149 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 228 (378)
T 3q15_A 149 EAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNI 228 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35778899999999999865411 1 111 13467788889999999999999998 222222 4578889
Q ss_pred HHHHHccCChHHHHHHHHhcC------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-----CCChhHHHHHHH
Q 043686 69 VSVLARAGLFDEARIFIQEYH------MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELK-----PLSAENYIMLSN 136 (282)
Q Consensus 69 i~~~~~~g~~~~A~~l~~~m~------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----p~~~~~~~~Li~ 136 (282)
...|.+.|++++|.+.|++.. ..|+ ..++..+...|.+.|++++|...+++..++. |.....+..|-.
T Consensus 229 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ 308 (378)
T 3q15_A 229 ANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQA 308 (378)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999998742 2444 6788999999999999999999999998652 323345666667
Q ss_pred HHHHcCc---hhhhhcccc
Q 043686 137 WYAAEAK---WDVVNQAYS 152 (282)
Q Consensus 137 ~y~~~g~---~~~A~~~~~ 152 (282)
.|...++ +.+|...+.
T Consensus 309 ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 309 VYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HHSSSCCHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHH
Confidence 7777777 566655443
No 150
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.09 E-value=1.5e-05 Score=57.35 Aligned_cols=92 Identities=12% Similarity=0.065 Sum_probs=77.8
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-------hhHHH
Q 043686 62 VTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS-------AENYI 132 (282)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~-------~~~~~ 132 (282)
...|..+...|.+.|++++|...|++.. ..| +..+|..+...|...|++++|...+++.....|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4578889999999999999999999854 344 58889999999999999999999999999776644 67888
Q ss_pred HHHHHHHHcCchhhhhcccce
Q 043686 133 MLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 133 ~Li~~y~~~g~~~~A~~~~~~ 153 (282)
.+...|.+.|++++|...+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~ 104 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNK 104 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHH
Confidence 899999999998888765443
No 151
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.08 E-value=1.2e-05 Score=80.27 Aligned_cols=127 Identities=15% Similarity=0.190 Sum_probs=84.2
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHHH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDEA 81 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~A 81 (282)
++-+.|++++|++-|.+- -|...|.-++.+|.+.|++++|.+.+. ....|+....+.++.+|+|.+++++.
T Consensus 1114 Aql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleel 1186 (1630)
T 1xi4_A 1114 AQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAEL 1186 (1630)
T ss_pred HHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHH
Confidence 566677888888887542 355667777888888888888888887 33445544555577777777777754
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 82 RIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 82 ~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
.... . .|+...|..+-..|...|++++|..+|... ..|..+...|.+.|++++|.+
T Consensus 1187 e~fI---~-~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1187 EEFI---N-GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred HHHH---h-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHH
Confidence 4442 2 455556666666677777777777777653 366666666666666666665
No 152
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.07 E-value=1.2e-05 Score=58.39 Aligned_cols=94 Identities=12% Similarity=-0.030 Sum_probs=77.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcC
Q 043686 34 FAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHV 108 (282)
Q Consensus 34 y~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g 108 (282)
+..+-..+.+.|++++|...|+ ....| +...|..+-.+|.+.|+.++|...|++.. ..|+ ...|..+...|.+.|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445567888999999999999 55666 57788899999999999999999999854 5675 889999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCC
Q 043686 109 QVKTGKRVIDQLCELKPLS 127 (282)
Q Consensus 109 ~~~~A~~~~~~m~~~~p~~ 127 (282)
++++|...|++..+..|.+
T Consensus 100 ~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHhCcCC
Confidence 9999999999999888854
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.06 E-value=5.9e-06 Score=65.20 Aligned_cols=117 Identities=4% Similarity=-0.155 Sum_probs=86.9
Q ss_pred HHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-H----------------H
Q 043686 37 VLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-P----------------E 95 (282)
Q Consensus 37 ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~----------------~ 95 (282)
.+......|.++++.+.|+ ..-.+ ....+..+...|.+.|++++|.+.|++.. ..|+ . .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 3444556688888888888 21122 35567788899999999999999999853 3332 2 7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686 96 VLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 96 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
+|..+..+|.+.|++++|...+++...+.|+++..+..+..+|...|++++|...+..
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999998765443
No 154
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.05 E-value=4.9e-05 Score=51.23 Aligned_cols=81 Identities=17% Similarity=0.103 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 043686 62 VTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYA 139 (282)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~ 139 (282)
...+..+...|.+.|++++|.+.|++.. ..| +..+|..+...|.+.|++++|.+.|++.....|.++..+..+...|.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5677888899999999999999999854 445 57889999999999999999999999999999988888888888776
Q ss_pred HcC
Q 043686 140 AEA 142 (282)
Q Consensus 140 ~~g 142 (282)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 155
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.05 E-value=1.4e-05 Score=67.11 Aligned_cols=94 Identities=7% Similarity=-0.078 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHh
Q 043686 32 LTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRI 106 (282)
Q Consensus 32 ~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~ 106 (282)
..+..+-..+.+.|++++|...|+ ....| +...|..+...|.+.|++++|.+.+++.. ..|+ ...|+.+..+|.+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344444445555555555555555 22333 34455555555555555555555555532 3343 4455555555555
Q ss_pred cCChhHHHHHHHHHHhcCC
Q 043686 107 HVQVKTGKRVIDQLCELKP 125 (282)
Q Consensus 107 ~g~~~~A~~~~~~m~~~~p 125 (282)
.|++++|.+.|++...+.|
T Consensus 85 ~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 85 MESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 5555555555555554443
No 156
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.04 E-value=6.5e-06 Score=74.62 Aligned_cols=113 Identities=8% Similarity=-0.090 Sum_probs=90.2
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCCh
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLF 78 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~ 78 (282)
..|.+.|++++|++.|++..+ ..|+ ..+|..+-.++.+.|++++|.+.++ ..+.|+ ...|..+..+|.+.|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 356789999999999999887 3454 6788889999999999999999999 556664 77899999999999999
Q ss_pred HHHHHHHHhcC-CCCC-HHHHHHHHHH--HHhcCChhHHHHHHH
Q 043686 79 DEARIFIQEYH-MERY-PEVLRALLEG--CRIHVQVKTGKRVID 118 (282)
Q Consensus 79 ~~A~~l~~~m~-~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~ 118 (282)
++|.+.|++.. ..|+ ..++..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999854 4454 4566666665 888999999999999
No 157
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.03 E-value=2.1e-05 Score=66.67 Aligned_cols=146 Identities=12% Similarity=-0.022 Sum_probs=110.9
Q ss_pred hcCChHHHHHHHHHhHHh-C----CCCCCHH----HHHHHHHHHhcCCCHHHHHHHhh--------ccCCCC-hhHHHHH
Q 043686 7 LHGQRELGLSLFSELEKK-S----SIEIDPL----TFAAVLHACSTAGMVEEGWLCFN--------RIRSPK-VTHHALM 68 (282)
Q Consensus 7 ~~g~~~~A~~lf~~m~~~-~----g~~p~~~----ty~~ll~a~~~~g~~~~a~~l~~--------~g~~p~-~~~~~~l 68 (282)
..|++++|.+++++..+. . +..|+.. .|......|...|++++|.+.|. .+-.+. ..+|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 367889999999876541 1 1235543 67777788999999999999998 222122 4588899
Q ss_pred HHHHHccCChHHHHHHHHhcC------CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------hhHHHHH
Q 043686 69 VSVLARAGLFDEARIFIQEYH------MERY--PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS------AENYIML 134 (282)
Q Consensus 69 i~~~~~~g~~~~A~~l~~~m~------~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~------~~~~~~L 134 (282)
...|.+.|++++|.+.|++.. -.|. ..+|+.+-..|.+ |++++|.+.|++...+.|.. ..+++.+
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 999999999999999998732 1222 4678889999988 99999999999998654321 3678889
Q ss_pred HHHHHHcCchhhhhcccce
Q 043686 135 SNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 135 i~~y~~~g~~~~A~~~~~~ 153 (282)
...|.+.|++++|...+..
T Consensus 162 g~~~~~~g~~~~A~~~~~~ 180 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQK 180 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 9999999999999985443
No 158
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.00 E-value=5.2e-06 Score=59.76 Aligned_cols=78 Identities=10% Similarity=0.019 Sum_probs=65.2
Q ss_pred ccCChHHHHHHHHhcC-C---CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhh
Q 043686 74 RAGLFDEARIFIQEYH-M---ERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVN 148 (282)
Q Consensus 74 ~~g~~~~A~~l~~~m~-~---~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~ 148 (282)
..|++++|.+.|++.. . .|+ ..+|..+...|.+.|++++|.+.|++..+..|+++..+..+...|.+.|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4688999999999854 4 365 6789999999999999999999999999999999999999999999999999986
Q ss_pred ccc
Q 043686 149 QAY 151 (282)
Q Consensus 149 ~~~ 151 (282)
..+
T Consensus 82 ~~~ 84 (117)
T 3k9i_A 82 ELL 84 (117)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 159
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.99 E-value=2.6e-05 Score=59.28 Aligned_cols=92 Identities=9% Similarity=-0.050 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHhcC-C------------------CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 62 VTHHALMVSVLARAGLFDEARIFIQEYH-M------------------ERY-PEVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~------------------~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
...+......+.+.|++++|.+.|.+.. . .|. ..+|..+..+|.+.|++++|...+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3467778889999999999999998843 2 333 5689999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686 122 ELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 122 ~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
+++|+++..|..+..+|...|++++|...+..
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 122 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKL 122 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 99999999999999999999999999775543
No 160
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.98 E-value=1.5e-05 Score=68.78 Aligned_cols=132 Identities=13% Similarity=0.029 Sum_probs=65.1
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARI 83 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 83 (282)
.|.+.|++++|+..|.+... +.|+... +...|+.+++...+. ...|..+..+|.+.|++++|.+
T Consensus 188 ~~~~~g~~~~A~~~y~~Al~---~~p~~~~-------~~~~~~~~~~~~~l~------~~~~~nla~~~~~~g~~~~A~~ 251 (338)
T 2if4_A 188 SLFKEEKLEEAMQQYEMAIA---YMGDDFM-------FQLYGKYQDMALAVK------NPCHLNIAACLIKLKRYDEAIG 251 (338)
T ss_dssp HTCSSSCCHHHHHHHHHHHH---HSCHHHH-------HTCCHHHHHHHHHHH------THHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHH---Hhccchh-------hhhcccHHHHHHHHH------HHHHHHHHHHHHHcCCHHHHHH
Confidence 46678999999999999776 4566542 223333333333222 1256666667777777777777
Q ss_pred HHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHH-HcCchhhhhccc
Q 043686 84 FIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYA-AEAKWDVVNQAY 151 (282)
Q Consensus 84 l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~-~~g~~~~A~~~~ 151 (282)
.|++.. ..| +...|..+-.+|...|++++|.+.|++..++.|++...+..|..... ..+..+++...+
T Consensus 252 ~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 252 HCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776643 344 36667777777777777777777777776666666566655555522 233444444433
No 161
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.98 E-value=3.7e-05 Score=64.50 Aligned_cols=93 Identities=10% Similarity=-0.096 Sum_probs=83.7
Q ss_pred ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686 61 KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY 138 (282)
Q Consensus 61 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y 138 (282)
+...+..+...|.+.|++++|.+.|++.. ..| +...|..+..+|.+.|++++|.+.+++..++.|+++..+..+..+|
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 46678889999999999999999999854 456 5889999999999999999999999999999999999999999999
Q ss_pred HHcCchhhhhcccce
Q 043686 139 AAEAKWDVVNQAYSW 153 (282)
Q Consensus 139 ~~~g~~~~A~~~~~~ 153 (282)
...|++++|...+..
T Consensus 83 ~~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 83 LEMESYDEAIANLQR 97 (281)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 999999999985543
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.97 E-value=2.9e-05 Score=56.21 Aligned_cols=89 Identities=15% Similarity=0.061 Sum_probs=74.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHhcC-CCCC-H---HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---hhHHHHHHH
Q 043686 65 HALMVSVLARAGLFDEARIFIQEYH-MERY-P---EVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS---AENYIMLSN 136 (282)
Q Consensus 65 ~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~---~~~~~~Li~ 136 (282)
+..+...+.+.|++++|.+.|++.. ..|+ . .+|..+..+|.+.|++++|...|++.....|++ +.++..+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3446677889999999999999864 3454 3 588889999999999999999999999999987 677888999
Q ss_pred HHHHcCchhhhhcccce
Q 043686 137 WYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 137 ~y~~~g~~~~A~~~~~~ 153 (282)
.|.+.|++++|...+..
T Consensus 85 ~~~~~g~~~~A~~~~~~ 101 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQ 101 (129)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 99999998888765544
No 163
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.93 E-value=3.5e-05 Score=62.11 Aligned_cols=123 Identities=7% Similarity=-0.019 Sum_probs=92.1
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHH----HHHHHHHHHh------------------cCCCHHHHHHHhh--ccC
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPL----TFAAVLHACS------------------TAGMVEEGWLCFN--RIR 58 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~----ty~~ll~a~~------------------~~g~~~~a~~l~~--~g~ 58 (282)
.+|.+.|++++|+..|++..+ ..|+.. .+-.+-.++. ..|+.++|...|+ ...
T Consensus 49 ~~~~~~~~~~~A~~~~~~~l~---~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 125 (225)
T 2yhc_A 49 YAYYKNADLPLAQAAIDRFIR---LNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG 125 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHHHH---HCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence 467889999999999999887 234431 2322222332 3688999999999 555
Q ss_pred CCCh-hHH-----------------HHHHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCChhHHHH
Q 043686 59 SPKV-THH-----------------ALMVSVLARAGLFDEARIFIQEYH-MERY----PEVLRALLEGCRIHVQVKTGKR 115 (282)
Q Consensus 59 ~p~~-~~~-----------------~~li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~li~~~~~~g~~~~A~~ 115 (282)
.|+. ..+ -.+...|.+.|++++|...|+++. ..|+ ...+..+..+|.+.|+.++|.+
T Consensus 126 ~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 126 YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 5653 233 245667889999999999999865 4555 2578889999999999999999
Q ss_pred HHHHHHhcCCCCh
Q 043686 116 VIDQLCELKPLSA 128 (282)
Q Consensus 116 ~~~~m~~~~p~~~ 128 (282)
.++.+....|+++
T Consensus 206 ~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 206 VAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHCCSCCC
T ss_pred HHHHHHhhCCCch
Confidence 9999988888653
No 164
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.93 E-value=3.3e-05 Score=58.99 Aligned_cols=88 Identities=9% Similarity=-0.072 Sum_probs=73.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHhcC-CCCC-------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhc------
Q 043686 64 HHALMVSVLARAGLFDEARIFIQEYH-MERY-------------PEVLRALLEGCRIHVQVKTGKRVIDQLCEL------ 123 (282)
Q Consensus 64 ~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 123 (282)
.+......+.+.|++++|.+.|++.- +.|+ ...|+.+-.++.+.|++++|...+++..++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 44556677788888999998888743 4444 338999999999999999999999999999
Q ss_pred -CCCChhHH----HHHHHHHHHcCchhhhhccc
Q 043686 124 -KPLSAENY----IMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 124 -~p~~~~~~----~~Li~~y~~~g~~~~A~~~~ 151 (282)
+|++...| ...-.+|...|++++|...+
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y 125 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEF 125 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHH
Confidence 99998899 99999999999999997644
No 165
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.93 E-value=0.00014 Score=72.74 Aligned_cols=159 Identities=9% Similarity=0.005 Sum_probs=82.9
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHH
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEA 81 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A 81 (282)
+..|.+.|++++|++.|..-++ ..|++...+.+..+|++.+++++...... .|+...|..+.+.|-..|++++|
T Consensus 1141 a~~~~~lGkyEEAIeyL~mArk---~~~e~~Idt~LafaYAKl~rleele~fI~---~~n~ad~~~iGd~le~eg~YeeA 1214 (1630)
T 1xi4_A 1141 VQAANTSGNWEELVKYLQMARK---KARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAA 1214 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh---hcccccccHHHHHHHHhhcCHHHHHHHHh---CCCHHHHHHHHHHHHhcCCHHHH
Confidence 3455566666666666665444 22333333346666666666654332222 23334444566666666666666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccccee-eecCeE
Q 043686 82 RIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWI-EFRNKV 160 (282)
Q Consensus 82 ~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~-~~~~~~ 160 (282)
..+|.... .|..+..+|++.|++++|.+.+++. .++.+|.-+-.+|...|++..|....-.+ ...+..
T Consensus 1215 ~~~Y~kA~------ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deL 1283 (1630)
T 1xi4_A 1215 KLLYNNVS------NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADEL 1283 (1630)
T ss_pred HHHHHhhh------HHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHH
Confidence 66666643 5666666666666666666666655 23356666666666666666665522111 011111
Q ss_pred EEEecCCCCCCChHHHH
Q 043686 161 HVFGTGDVSCPRSEGIF 177 (282)
Q Consensus 161 ~~~i~~~~~~~~~~~a~ 177 (282)
..++.-|.+.|.+++|+
T Consensus 1284 eeli~yYe~~G~feEAI 1300 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELI 1300 (1630)
T ss_pred HHHHHHHHHcCCHHHHH
Confidence 23334455566666665
No 166
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.92 E-value=1.9e-05 Score=68.19 Aligned_cols=90 Identities=6% Similarity=-0.112 Sum_probs=70.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHhcC-CCCCH------------------HHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 043686 64 HHALMVSVLARAGLFDEARIFIQEYH-MERYP------------------EVLRALLEGCRIHVQVKTGKRVIDQLCELK 124 (282)
Q Consensus 64 ~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~~------------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 124 (282)
.+..+...|.+.|++++|.+.|++.. ..|+. .+|+.+-.+|.+.|++++|...|++..++.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 260 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE 260 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44555555556666666666665532 33432 288999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686 125 PLSAENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 125 p~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
|+++..|..+..+|...|++++|...+..
T Consensus 261 p~~~~a~~~lg~a~~~~g~~~~A~~~l~~ 289 (338)
T 2if4_A 261 EKNPKALFRRGKAKAELGQMDSARDDFRK 289 (338)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999985443
No 167
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.92 E-value=2.4e-05 Score=58.26 Aligned_cols=119 Identities=9% Similarity=0.007 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhh--ccCC---CC----hhHHHHHHHHHHccCChHHHHHHHHhcC----CCCC----H
Q 043686 32 LTFAAVLHACSTAGMVEEGWLCFN--RIRS---PK----VTHHALMVSVLARAGLFDEARIFIQEYH----MERY----P 94 (282)
Q Consensus 32 ~ty~~ll~a~~~~g~~~~a~~l~~--~g~~---p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~p~----~ 94 (282)
.++..+-..+...|++++|...++ ..+. ++ ..++..+...|...|++++|.+.+++.. -.++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 356666677778888888888887 1111 11 2467788888888999999998888743 1122 4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcC---C---CChhHHHHHHHHHHHcCchhhhhcc
Q 043686 95 EVLRALLEGCRIHVQVKTGKRVIDQLCELK---P---LSAENYIMLSNWYAAEAKWDVVNQA 150 (282)
Q Consensus 95 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---p---~~~~~~~~Li~~y~~~g~~~~A~~~ 150 (282)
.++..+...|...|++++|.+.+++..... + ....++..+...|...|++++|...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 151 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 151 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHH
Confidence 567788888889999999999998877431 1 1235677788888888888888653
No 168
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.90 E-value=0.00013 Score=65.02 Aligned_cols=121 Identities=12% Similarity=0.009 Sum_probs=92.4
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHhh---------cc--CCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-------
Q 043686 29 IDPLTFAAVLHACSTAGMVEEGWLCFN---------RI--RSPK-VTHHALMVSVLARAGLFDEARIFIQEYH------- 89 (282)
Q Consensus 29 p~~~ty~~ll~a~~~~g~~~~a~~l~~---------~g--~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~------- 89 (282)
.....||.|-..+...|+.++|.+.|+ .+ ..|+ .++|+.+...|...|++++|...+++..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 345678988889999999999999997 11 2343 6789999999999999999999988742
Q ss_pred --CCCC-HHHHHHHHHHHHhc--CChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc---Cchhhhhc
Q 043686 90 --MERY-PEVLRALLEGCRIH--VQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAE---AKWDVVNQ 149 (282)
Q Consensus 90 --~~p~-~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~---g~~~~A~~ 149 (282)
..++ ..+|+.+-.++.+. +++++|.+.|++..+++|+++..+..+...+.+. ++.++|..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~ 196 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAID 196 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHH
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 1233 56777776666554 4799999999999999999988888777775544 45555554
No 169
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.89 E-value=3.1e-05 Score=59.18 Aligned_cols=98 Identities=13% Similarity=-0.059 Sum_probs=73.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHhh--ccCCCC-------------hhHHHHHHHHHHccCChHHHHHHHHhcC-C-------
Q 043686 34 FAAVLHACSTAGMVEEGWLCFN--RIRSPK-------------VTHHALMVSVLARAGLFDEARIFIQEYH-M------- 90 (282)
Q Consensus 34 y~~ll~a~~~~g~~~~a~~l~~--~g~~p~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~-~------- 90 (282)
+...-..+.+.|++++|.+.|+ ..+.|+ ...|+.+-.++.+.|++++|...+++.- +
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3334445556666777766666 333333 2378888888889999988888887743 5
Q ss_pred CCC-HHHH----HHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHH
Q 043686 91 ERY-PEVL----RALLEGCRIHVQVKTGKRVIDQLCELKPLSAENY 131 (282)
Q Consensus 91 ~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~ 131 (282)
.|| ...| +..-.++...|++++|...|++..++.|.+...+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 887 6788 9999999999999999999999999888664433
No 170
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.87 E-value=0.00033 Score=60.47 Aligned_cols=145 Identities=10% Similarity=0.029 Sum_probs=87.6
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCC--C--CHHHHHHHHHHHhcCCCHHHHHHHhh----ccCCCCh-hHHH-----HHH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIE--I--DPLTFAAVLHACSTAGMVEEGWLCFN----RIRSPKV-THHA-----LMV 69 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~--p--~~~ty~~ll~a~~~~g~~~~a~~l~~----~g~~p~~-~~~~-----~li 69 (282)
.|...|++++|...+++... ..-. | ...+|..+-..+...|++++|...++ ..-.++. ..+. ..+
T Consensus 144 ~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 222 (373)
T 1hz4_A 144 LLWAWARLDEAEASARSGIE-VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 222 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-HTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH-HhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHH
Confidence 45667888888888887654 2111 1 23456666667777888888888777 1111111 1111 233
Q ss_pred HHHHccCChHHHHHHHHhcC-CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-----CC-hhHHHHHHHH
Q 043686 70 SVLARAGLFDEARIFIQEYH-MERY-----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKP-----LS-AENYIMLSNW 137 (282)
Q Consensus 70 ~~~~~~g~~~~A~~l~~~m~-~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p-----~~-~~~~~~Li~~ 137 (282)
..+...|+.++|.+.+++.. ..|. ..++..+...+...|++++|.+.+++.....+ .+ ...+..+...
T Consensus 223 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~ 302 (373)
T 1hz4_A 223 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQL 302 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHH
Confidence 44667888888888887754 2221 33566677777888888888888887763211 11 1255566677
Q ss_pred HHHcCchhhhhc
Q 043686 138 YAAEAKWDVVNQ 149 (282)
Q Consensus 138 y~~~g~~~~A~~ 149 (282)
|...|+.++|..
T Consensus 303 ~~~~g~~~~A~~ 314 (373)
T 1hz4_A 303 YWQAGRKSDAQR 314 (373)
T ss_dssp HHHHTCHHHHHH
T ss_pred HHHhCCHHHHHH
Confidence 777777777754
No 171
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.82 E-value=0.00015 Score=65.86 Aligned_cols=114 Identities=10% Similarity=-0.015 Sum_probs=76.2
Q ss_pred HhcCCCHHHHHHHhh-------c---cCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC---------CCCC-HHHHHH
Q 043686 41 CSTAGMVEEGWLCFN-------R---IRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH---------MERY-PEVLRA 99 (282)
Q Consensus 41 ~~~~g~~~~a~~l~~-------~---g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~---------~~p~-~~~~~~ 99 (282)
+...|++++|..+++ . .-.|+ ..+++.|...|...|++++|+.++++.. -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345677777777766 1 12333 4577788888888888888888777632 2344 567888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh-----cCCCCh---hHHHHHHHHHHHcCchhhhhccccee
Q 043686 100 LLEGCRIHVQVKTGKRVIDQLCE-----LKPLSA---ENYIMLSNWYAAEAKWDVVNQAYSWI 154 (282)
Q Consensus 100 li~~~~~~g~~~~A~~~~~~m~~-----~~p~~~---~~~~~Li~~y~~~g~~~~A~~~~~~~ 154 (282)
|-..|...|++++|+.++++..+ +.|+++ .+.+.|-..+.+.+++.+|+..+..+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888887762 456553 33456667777777777777755443
No 172
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.81 E-value=5.1e-05 Score=56.45 Aligned_cols=120 Identities=8% Similarity=-0.082 Sum_probs=91.8
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCC-CCCCH----HHHHHHHHHHhcCCCHHHHHHHhh--------ccCCCC-hhHHHHH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSS-IEIDP----LTFAAVLHACSTAGMVEEGWLCFN--------RIRSPK-VTHHALM 68 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g-~~p~~----~ty~~ll~a~~~~g~~~~a~~l~~--------~g~~p~-~~~~~~l 68 (282)
..|...|++++|++.|.+..+ .. -.++. .++..+-..+...|++++|.+.++ .+-.+. ..++..+
T Consensus 17 ~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 95 (164)
T 3ro3_A 17 NTHYLLGNFRDAVIAHEQRLL-IAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 95 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHH-HHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 356788999999999999765 21 01221 467778888999999999999998 111111 4577888
Q ss_pred HHHHHccCChHHHHHHHHhcC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 043686 69 VSVLARAGLFDEARIFIQEYH----MERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCEL 123 (282)
Q Consensus 69 i~~~~~~g~~~~A~~l~~~m~----~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 123 (282)
...|...|++++|.+.+++.. -.++ ..++..+...|...|++++|.+.+++..++
T Consensus 96 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 96 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999998743 1112 467888888999999999999999998754
No 173
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.80 E-value=5.9e-05 Score=68.49 Aligned_cols=78 Identities=10% Similarity=0.044 Sum_probs=61.1
Q ss_pred HHccCChHHHHHHHHhcC------C---CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCC---hhHHHH
Q 043686 72 LARAGLFDEARIFIQEYH------M---ERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCE-----LKPLS---AENYIM 133 (282)
Q Consensus 72 ~~~~g~~~~A~~l~~~m~------~---~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~p~~---~~~~~~ 133 (282)
+...|++++|+.++++.. + .|+ ..+++.|...|...|++++|+.++++... +.|++ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 346788999988887631 2 344 56899999999999999999999998772 34443 466888
Q ss_pred HHHHHHHcCchhhhhc
Q 043686 134 LSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 134 Li~~y~~~g~~~~A~~ 149 (282)
|...|...|++++|+.
T Consensus 399 La~~~~~~G~~~eA~~ 414 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHG 414 (490)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHH
Confidence 8899999999999988
No 174
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.77 E-value=0.00019 Score=60.11 Aligned_cols=117 Identities=10% Similarity=-0.005 Sum_probs=92.2
Q ss_pred hhhhcCChHHHHHHHHHhHHhCC---CCCC--HHHHHHHHHHHhcCCCHHHHHHHhh--c---cCCCC-----hhHHHHH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSS---IEID--PLTFAAVLHACSTAGMVEEGWLCFN--R---IRSPK-----VTHHALM 68 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g---~~p~--~~ty~~ll~a~~~~g~~~~a~~l~~--~---g~~p~-----~~~~~~l 68 (282)
.|...|++++|+..|.+..+ .. ..+. ..+|+.+-..|...|++++|...|+ . ...|+ ..+|+.+
T Consensus 124 ~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nl 202 (293)
T 2qfc_A 124 YVLKKVDYEYCILELKKLLN-QQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH 202 (293)
T ss_dssp HHHTSSCHHHHHHHHHHHHT-TCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHH-HHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhH
Confidence 45677899999999999764 21 1122 4588889999999999999999998 1 22232 2588999
Q ss_pred HHHHHccCChHHHHHHHHhcC-CCCC-------HHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 043686 69 VSVLARAGLFDEARIFIQEYH-MERY-------PEVLRALLEGCRIHVQVKTG-KRVIDQLC 121 (282)
Q Consensus 69 i~~~~~~g~~~~A~~l~~~m~-~~p~-------~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 121 (282)
...|.+.|++++|.+.|++.. +.++ ..+|..+...|.+.|+.++| ...+++..
T Consensus 203 g~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 203 AKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 999999999999999998743 1111 67899999999999999999 88888876
No 175
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.73 E-value=0.00024 Score=56.72 Aligned_cols=124 Identities=10% Similarity=0.022 Sum_probs=99.9
Q ss_pred HHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCC-ChhHHHHHHHHHHccC----ChHHHHHHHH
Q 043686 12 ELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSP-KVTHHALMVSVLARAG----LFDEARIFIQ 86 (282)
Q Consensus 12 ~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p-~~~~~~~li~~~~~~g----~~~~A~~l~~ 86 (282)
.+|++.|++..+ . -+...+..|-..+...+++++|.+.|+....+ +...+..|-..|.+ | +.++|.+.|+
T Consensus 3 ~eA~~~~~~aa~-~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAE-A---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHH-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHH-C---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 468888999887 4 46778888888888899999999999922222 56778888888888 7 8999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCC--ChhHHHHHHHHHHH
Q 043686 87 EYHMERYPEVLRALLEGCRI----HVQVKTGKRVIDQLCELKPL--SAENYIMLSNWYAA 140 (282)
Q Consensus 87 ~m~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~p~--~~~~~~~Li~~y~~ 140 (282)
+.--.-+..++..|-..|.. .+++++|.+.|++..+..|. ++.++..|-.+|..
T Consensus 78 ~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~ 137 (212)
T 3rjv_A 78 KAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS 137 (212)
T ss_dssp HHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence 86413357888889888887 88999999999999988772 36788889888877
No 176
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.71 E-value=0.00094 Score=60.18 Aligned_cols=136 Identities=7% Similarity=-0.092 Sum_probs=64.9
Q ss_pred cCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhc----CCCHHHHHHHhhccCC-CChhHHHHHHHHHHc----cCCh
Q 043686 8 HGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACST----AGMVEEGWLCFNRIRS-PKVTHHALMVSVLAR----AGLF 78 (282)
Q Consensus 8 ~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~----~g~~~~a~~l~~~g~~-p~~~~~~~li~~~~~----~g~~ 78 (282)
.++.++|++.|++..+ .| +...+..|-..|.. .++.++|...|+.-.. -+...+..|...|.. .++.
T Consensus 92 ~~~~~~A~~~~~~a~~-~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAAL-KG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp CCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 4555555555555544 32 33334444444444 4555555555550000 123344444444544 4555
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCchhhhhc
Q 043686 79 DEARIFIQEYHMERYPEVLRALLEGCRI----HVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAA----EAKWDVVNQ 149 (282)
Q Consensus 79 ~~A~~l~~~m~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~----~g~~~~A~~ 149 (282)
++|.+.|++..-..+..++..|-..|.+ .++.++|.+.|++..... ++.++..|..+|.. .++.++|..
T Consensus 168 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 168 VMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DELGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 5555555543212244555555555554 555555555555554332 23455555555554 455555554
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00016 Score=63.58 Aligned_cols=182 Identities=10% Similarity=-0.018 Sum_probs=123.6
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCC-C---------------HHHHHHHHHHHhcCCCHHHHHHHhh-----ccCCCCh
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEI-D---------------PLTFAAVLHACSTAGMVEEGWLCFN-----RIRSPKV 62 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p-~---------------~~ty~~ll~a~~~~g~~~~a~~l~~-----~g~~p~~ 62 (282)
.+.+.|++++|++.|.+..+ ..-.. + ...+..+...|.+.|++++|.+.+. .+-.++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLD-KDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHH-SCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHCCCHHHHHHHHHHHHh-hCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 46789999999999999876 32111 1 1247788899999999999999998 2222222
Q ss_pred ----hHHHHHHHHHHccCChHHHHHHHHhcC-------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc------C
Q 043686 63 ----THHALMVSVLARAGLFDEARIFIQEYH-------MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCEL------K 124 (282)
Q Consensus 63 ----~~~~~li~~~~~~g~~~~A~~l~~~m~-------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~ 124 (282)
.+.+.+-..+...|+.+.|.+++++.. ..+. ..++..|...|...|++++|..++++.... .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 233344445556789999999987742 2333 568889999999999999999999998731 2
Q ss_pred CCChhHHHHHHHHHHHcCchhhhhccccee-------eec----CeE-EEEecCCCCCCChHHHHHHHHHHHHH
Q 043686 125 PLSAENYIMLSNWYAAEAKWDVVNQAYSWI-------EFR----NKV-HVFGTGDVSCPRSEGIFWELQSLMKK 186 (282)
Q Consensus 125 p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~-------~~~----~~~-~~~i~~~~~~~~~~~a~~~~~~l~~~ 186 (282)
|..+.+|..++..|...|++++|...+... +.. ..+ ..+...+...++.++|.......|+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 323568889999999999999998743221 110 001 12223356667777776444444443
No 178
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.70 E-value=0.00027 Score=59.24 Aligned_cols=113 Identities=5% Similarity=-0.037 Sum_probs=79.8
Q ss_pred HHHHHhcCCCHHHHHHHhh-----ccCCCCh----hHHHHHHHHHHccCChHHHHHHHHhcC----CCCC----HHHHHH
Q 043686 37 VLHACSTAGMVEEGWLCFN-----RIRSPKV----THHALMVSVLARAGLFDEARIFIQEYH----MERY----PEVLRA 99 (282)
Q Consensus 37 ll~a~~~~g~~~~a~~l~~-----~g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~----~~p~----~~~~~~ 99 (282)
.+..+...|++++|..+++ ....|+. ..|..+...|...|++++|.+.|++.. -.+| ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566778889999998888 2223332 234457777778889999999888742 1223 346888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh---cC----CCChhHHHHHHHHHHHcCchhhhhc
Q 043686 100 LLEGCRIHVQVKTGKRVIDQLCE---LK----PLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 100 li~~~~~~g~~~~A~~~~~~m~~---~~----p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
+...|...|++++|...|+++.. -. |....+|..+...|.+.|++++|..
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~ 217 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY 217 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 88889999999999999998873 11 1123467788888888888888755
No 179
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.67 E-value=0.0012 Score=59.54 Aligned_cols=174 Identities=6% Similarity=-0.086 Sum_probs=126.9
Q ss_pred cCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhc----CCCHHHHHHHhhccCC-CChhHHHHHHHHHHc----cCCh
Q 043686 8 HGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACST----AGMVEEGWLCFNRIRS-PKVTHHALMVSVLAR----AGLF 78 (282)
Q Consensus 8 ~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~----~g~~~~a~~l~~~g~~-p~~~~~~~li~~~~~----~g~~ 78 (282)
.+++++|+..|++..+ .| +...+..|-..|.. .++.++|.+.|+.-.. .+...+..|-..|.. .++.
T Consensus 56 ~~~~~~A~~~~~~a~~-~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAE-QG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 7899999999999887 54 56677777777887 8999999999991111 256677778888888 7899
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCchhhhhcc
Q 043686 79 DEARIFIQEYHMERYPEVLRALLEGCRI----HVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAA----EAKWDVVNQA 150 (282)
Q Consensus 79 ~~A~~l~~~m~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~----~g~~~~A~~~ 150 (282)
++|.+.|++..-.-+...+..|-..|.. .++.++|.+.|++..+. .++.++..|..+|.. .++.++|.+.
T Consensus 132 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 132 AESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 9999999986413357788888888887 78999999999998765 356889999999988 8899999885
Q ss_pred cceeeecCeE-------EEEecCCCCCCChHHHHHHHHHHHHHHHhCC
Q 043686 151 YSWIEFRNKV-------HVFGTGDVSCPRSEGIFWELQSLMKKMEGDS 191 (282)
Q Consensus 151 ~~~~~~~~~~-------~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g 191 (282)
+...-..+.. ..+..+....++.++|. .+|++-.+.|
T Consensus 210 ~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~----~~~~~a~~~~ 253 (490)
T 2xm6_A 210 YRKSATSGDELGQLHLADMYYFGIGVTQDYTQSR----VLFSQSAEQG 253 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH----HHHHHHHTTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH----HHHHHHHHCC
Confidence 5442222211 11222333355666666 6666555544
No 180
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.67 E-value=0.00046 Score=57.79 Aligned_cols=118 Identities=6% Similarity=-0.056 Sum_probs=93.4
Q ss_pred HHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCh
Q 043686 37 VLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERY----PEVLRALLEGCRIHVQV 110 (282)
Q Consensus 37 ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~----~~~~~~li~~~~~~g~~ 110 (282)
+...+...|++++|.++|+ .-..|+....-.+-..+.+.+++++|+..|+...-.|+ ..++..+-.++.+.|++
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~ 187 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALF 187 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCH
Confidence 4556788999999999999 44557554667777789999999999999987552332 34788899999999999
Q ss_pred hHHHHHHHHHHh-cC-CC-ChhHHHHHHHHHHHcCchhhhhccccee
Q 043686 111 KTGKRVIDQLCE-LK-PL-SAENYIMLSNWYAAEAKWDVVNQAYSWI 154 (282)
Q Consensus 111 ~~A~~~~~~m~~-~~-p~-~~~~~~~Li~~y~~~g~~~~A~~~~~~~ 154 (282)
++|++.|++... -. |. .+.....+..++.+.|+.++|...+...
T Consensus 188 ~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 188 TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999873 22 64 3346677888899999999998877665
No 181
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.63 E-value=0.00017 Score=51.29 Aligned_cols=56 Identities=11% Similarity=0.020 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 94 PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 94 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
...|..+...|.+.|++++|...|++.....|++...|..+...|.+.|++++|..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444455555555555555555554455444444455555555555444443
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.62 E-value=0.00014 Score=65.48 Aligned_cols=116 Identities=6% Similarity=-0.073 Sum_probs=94.5
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCC----------------HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-Chh
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEID----------------PLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVT 63 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~----------------~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~ 63 (282)
..|.+.|++++|+..|++..+ +.|+ ...|..+-.++.+.|++++|...++ ..+.| +..
T Consensus 276 ~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~ 352 (457)
T 1kt0_A 276 TVYFKGGKYMQAVIQYGKIVS---WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEK 352 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHhCCCHHHHHHHHHHHHH---HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH
Confidence 357789999999999999876 3344 4788889999999999999999999 55566 478
Q ss_pred HHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHH-HHHHHH
Q 043686 64 HHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKR-VIDQLC 121 (282)
Q Consensus 64 ~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~-~~~~m~ 121 (282)
.|..+-.+|.+.|++++|.+.|++.. +.|+ ..+|..+...+.+.++.++|.+ .++.|.
T Consensus 353 a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 353 GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999864 6775 6788999999999999888764 455554
No 183
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.61 E-value=0.0002 Score=55.84 Aligned_cols=110 Identities=16% Similarity=0.004 Sum_probs=82.5
Q ss_pred hcCCCHHHHHHHhh--ccCC-CChhHHHHHHHHHHccCChHHHHHHHHhcC-------CCC-CHHHHHHHHHHHHhcCCh
Q 043686 42 STAGMVEEGWLCFN--RIRS-PKVTHHALMVSVLARAGLFDEARIFIQEYH-------MER-YPEVLRALLEGCRIHVQV 110 (282)
Q Consensus 42 ~~~g~~~~a~~l~~--~g~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-------~~p-~~~~~~~li~~~~~~g~~ 110 (282)
...|++++|.++++ .+.. ....++..+...|...|++++|.+.|++.. ..| ...+++.+-..|...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 46799999999444 2322 246788999999999999999999998843 112 256788899999999999
Q ss_pred hHHHHHHHHHHhc---CCCC----hhHHHHHHHHHHHcCchhhhhccc
Q 043686 111 KTGKRVIDQLCEL---KPLS----AENYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 111 ~~A~~~~~~m~~~---~p~~----~~~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
++|.+.+++...+ .|++ ...+..+...|...|++++|...+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 130 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEY 130 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999998854 4422 345778888999999988886533
No 184
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.59 E-value=4.5e-05 Score=58.17 Aligned_cols=91 Identities=12% Similarity=0.088 Sum_probs=61.0
Q ss_pred CHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCC----------hHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcC--
Q 043686 46 MVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGL----------FDEARIFIQEYH-MERY-PEVLRALLEGCRIHV-- 108 (282)
Q Consensus 46 ~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g-- 108 (282)
.+++|...++ ..+.| +...|+.+-.++.+.|+ +++|...|++.- +.|+ ..+|+.+-.+|.+.|
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l 96 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL 96 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc
Confidence 3444444444 33334 34444445445544443 568888888854 6776 778999999998764
Q ss_pred ---------ChhHHHHHHHHHHhcCCCChhHHHHHHHH
Q 043686 109 ---------QVKTGKRVIDQLCELKPLSAENYIMLSNW 137 (282)
Q Consensus 109 ---------~~~~A~~~~~~m~~~~p~~~~~~~~Li~~ 137 (282)
++++|.+.|++..+++|++ ..|...+..
T Consensus 97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~~-~~y~~al~~ 133 (158)
T 1zu2_A 97 TPDETEAKHNFDLATQFFQQAVDEQPDN-THYLKSLEM 133 (158)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred CcchhhhhccHHHHHHHHHHHHHhCCCC-HHHHHHHHH
Confidence 8999999999999999987 555444443
No 185
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.54 E-value=0.00027 Score=50.12 Aligned_cols=93 Identities=8% Similarity=-0.078 Sum_probs=64.6
Q ss_pred HHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 043686 50 GWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELK 124 (282)
Q Consensus 50 a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 124 (282)
|.+.|+ ....| +...+..+...|.+.|++++|.+.|++.. ..|+ ..+|..+...|.+.|++++|...|++...+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 344444 33445 46677888888888899999999888754 4554 7788888889999999999999999888765
Q ss_pred CC--ChhHHHHHHHHHHHcC
Q 043686 125 PL--SAENYIMLSNWYAAEA 142 (282)
Q Consensus 125 p~--~~~~~~~Li~~y~~~g 142 (282)
|. +......+...+.+.+
T Consensus 84 ~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 84 QSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHTCHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHhc
Confidence 52 3334444444444443
No 186
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.50 E-value=0.00037 Score=48.45 Aligned_cols=62 Identities=8% Similarity=-0.114 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 043686 62 VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCEL 123 (282)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 123 (282)
...+..+...|.+.|++++|.+.|++.. ..|+ ..+|..+-.+|.+.|++++|.+.|++..++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4445555555555555555555555532 3332 445555555555555555555555555533
No 187
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.45 E-value=0.00039 Score=62.06 Aligned_cols=88 Identities=7% Similarity=-0.140 Sum_probs=70.1
Q ss_pred cCCCHHHHHHHhh-------cc---CCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC---------CCCC-HHHHHHHH
Q 043686 43 TAGMVEEGWLCFN-------RI---RSPK-VTHHALMVSVLARAGLFDEARIFIQEYH---------MERY-PEVLRALL 101 (282)
Q Consensus 43 ~~g~~~~a~~l~~-------~g---~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~---------~~p~-~~~~~~li 101 (282)
+.|++++|..+++ .- -.|+ ..+++.|..+|...|++++|+.++++.. -.|+ ..+||.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578899998887 22 2343 5689999999999999999999998842 3455 56899999
Q ss_pred HHHHhcCChhHHHHHHHHHHh-----cCCCChhH
Q 043686 102 EGCRIHVQVKTGKRVIDQLCE-----LKPLSAEN 130 (282)
Q Consensus 102 ~~~~~~g~~~~A~~~~~~m~~-----~~p~~~~~ 130 (282)
..|...|++++|+.++++..+ +.|+++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999873 57776544
No 188
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.0016 Score=57.11 Aligned_cols=148 Identities=7% Similarity=-0.032 Sum_probs=108.0
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHH---HHHHHH-HHhcCCCHHHHHHHhh--------ccCCCC-hhHHHHH
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLT---FAAVLH-ACSTAGMVEEGWLCFN--------RIRSPK-VTHHALM 68 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~t---y~~ll~-a~~~~g~~~~a~~l~~--------~g~~p~-~~~~~~l 68 (282)
...|.+.|++++|.+++.+.....+-.++..+ ....+. .+...|..++|.+++. .+..+. ..++..|
T Consensus 62 ~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (434)
T 4b4t_Q 62 GQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKL 141 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 35788999999999999997651222233322 233333 3445689999999988 333443 4577889
Q ss_pred HHHHHccCChHHHHHHHHhcC-------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCC----hhHHHH
Q 043686 69 VSVLARAGLFDEARIFIQEYH-------MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCEL---KPLS----AENYIM 133 (282)
Q Consensus 69 i~~~~~~g~~~~A~~l~~~m~-------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~p~~----~~~~~~ 133 (282)
...|-..|++++|..++++.. -.|. +.+|..++..|...|++++|..++++.... .|+. ...+..
T Consensus 142 a~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 221 (434)
T 4b4t_Q 142 ATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLM 221 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Confidence 999999999999999998743 1233 668999999999999999999999998742 2222 245667
Q ss_pred HHHHHHHcCchhhhhc
Q 043686 134 LSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 134 Li~~y~~~g~~~~A~~ 149 (282)
+...|...|++++|..
T Consensus 222 ~g~~~~~~~~y~~A~~ 237 (434)
T 4b4t_Q 222 SGILHCEDKDYKTAFS 237 (434)
T ss_dssp HHHHTTSSSCHHHHHH
T ss_pred HHHHHHHHHhHHHHHH
Confidence 7777888889888877
No 189
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.38 E-value=0.00078 Score=63.57 Aligned_cols=179 Identities=8% Similarity=-0.046 Sum_probs=123.5
Q ss_pred hhhcCChHHHH-HHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccC-----------CCC---------
Q 043686 5 YSLHGQRELGL-SLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIR-----------SPK--------- 61 (282)
Q Consensus 5 ~~~~g~~~~A~-~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~-----------~p~--------- 61 (282)
+-+.|+.++|. ++|.+... . ++.+..-|-..+...-+.|++++|+++|+ ... .|+
T Consensus 353 ~~~~~~~~~a~r~il~rAi~-~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~ 430 (679)
T 4e6h_A 353 QGEKNTDSTVITKYLKLGQQ-C-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLK 430 (679)
T ss_dssp HHHHSCCTTHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhc
Confidence 34578888997 99999765 2 33445556667777888899999999999 111 142
Q ss_pred ---hhHHHHHHHHHHccCChHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHH
Q 043686 62 ---VTHHALMVSVLARAGLFDEARIFIQEYH-----MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIM 133 (282)
Q Consensus 62 ---~~~~~~li~~~~~~g~~~~A~~l~~~m~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~ 133 (282)
..+|...+....+.|.++.|.++|.+.. ..+.+.+..+.+.-.+ .++.+.|.++|+...+..|+++..|..
T Consensus 431 ~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~~p~~~~~w~~ 509 (679)
T 4e6h_A 431 SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKYFATDGEYINK 509 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCchHHHHH
Confidence 3468888888888999999999998853 2234555555554322 456999999999999888888888889
Q ss_pred HHHHHHHcCchhhhhcccceeeecCe--------EEEEecCCCCCCChHHHHHHHHHHHHHHHhC
Q 043686 134 LSNWYAAEAKWDVVNQAYSWIEFRNK--------VHVFGTGDVSCPRSEGIFWELQSLMKKMEGD 190 (282)
Q Consensus 134 Li~~y~~~g~~~~A~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~ 190 (282)
.++.....|+.+.|..+|+....... ...++.--.++|..+.+. .+.++|.+.
T Consensus 510 y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~----~v~~R~~~~ 570 (679)
T 4e6h_A 510 YLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR----TLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH----HHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH----HHHHHHHHh
Confidence 99988899999999987766322211 022222223456565554 666666644
No 190
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.33 E-value=0.0014 Score=44.87 Aligned_cols=64 Identities=16% Similarity=0.105 Sum_probs=54.8
Q ss_pred HHHHHHccCChHHHHHHHHhcC-CCCC-HH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHH
Q 043686 68 MVSVLARAGLFDEARIFIQEYH-MERY-PE-VLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENY 131 (282)
Q Consensus 68 li~~~~~~g~~~~A~~l~~~m~-~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~ 131 (282)
....+.+.|++++|.+.|++.. ..|+ .. .|..+-..|.+.|++++|.+.|++..+..|++...+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 4566788999999999999864 4564 67 899999999999999999999999999999887766
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.33 E-value=0.00081 Score=46.63 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 94 PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 94 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
...|..+...|.+.|++++|.+.|++..+..|+++..|..+..+|.+.|++++|..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 62 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 45555555566666666666666666665566555556666666666666665555
No 192
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.32 E-value=0.0017 Score=57.86 Aligned_cols=95 Identities=5% Similarity=-0.139 Sum_probs=73.9
Q ss_pred HHHHHhcCCCHHHHHHHhh-------ccCCC---C-hhHHHHHHHHHHccCChHHHHHHHHhcC---------CCCC-HH
Q 043686 37 VLHACSTAGMVEEGWLCFN-------RIRSP---K-VTHHALMVSVLARAGLFDEARIFIQEYH---------MERY-PE 95 (282)
Q Consensus 37 ll~a~~~~g~~~~a~~l~~-------~g~~p---~-~~~~~~li~~~~~~g~~~~A~~l~~~m~---------~~p~-~~ 95 (282)
.+..+.+.|++++|.++++ .-+.| + ..+++.|...|...|++++|+.++++.. -.|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3455667889999999887 22223 2 5688999999999999999999998742 3455 57
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCChhHH
Q 043686 96 VLRALLEGCRIHVQVKTGKRVIDQLCE-----LKPLSAENY 131 (282)
Q Consensus 96 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~p~~~~~~ 131 (282)
+++.|-..|...|++++|+.++++..+ +.|+++.+-
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 899999999999999999999999873 577765443
No 193
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.29 E-value=0.003 Score=56.46 Aligned_cols=134 Identities=8% Similarity=-0.002 Sum_probs=68.2
Q ss_pred ChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcC----CCHHHHHHHhhccCCCChhHHHHHHHH-H--HccCChHHHH
Q 043686 10 QRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTA----GMVEEGWLCFNRIRSPKVTHHALMVSV-L--ARAGLFDEAR 82 (282)
Q Consensus 10 ~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~----g~~~~a~~l~~~g~~p~~~~~~~li~~-~--~~~g~~~~A~ 82 (282)
+.++|++.|++..+ .|. ++...+..|-..|... ++.++|.++|+.-..-+...+..|-.. | ...|+.++|.
T Consensus 194 ~~~~A~~~~~~aa~-~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~ 271 (452)
T 3e4b_A 194 QQAELLKQMEAGVS-RGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMM 271 (452)
T ss_dssp HHHHHHHHHHHHHH-TTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHH
T ss_pred cHHHHHHHHHHHHH-CCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 55666666666555 442 2333333344444333 466666666661122234455555554 3 3456666666
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCchhhhhc
Q 043686 83 IFIQEYHMERYPEVLRALLEGCRIHV-----QVKTGKRVIDQLCELKPLSAENYIMLSNWYAA----EAKWDVVNQ 149 (282)
Q Consensus 83 ~l~~~m~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~----~g~~~~A~~ 149 (282)
+.|++.--.-+...++.|-..|. .| +.++|.+.|++.. |.++..+..|-.+|.. ..+.++|..
T Consensus 272 ~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 343 (452)
T 3e4b_A 272 KYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALD 343 (452)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence 66665331224555555555554 33 6666666666554 4455556666555554 124455544
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.29 E-value=0.00073 Score=58.98 Aligned_cols=90 Identities=4% Similarity=-0.063 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHhcC-----------------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 043686 63 THHALMVSVLARAGLFDEARIFIQEYH-----------------MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELK 124 (282)
Q Consensus 63 ~~~~~li~~~~~~g~~~~A~~l~~~m~-----------------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 124 (282)
..+..+...|.+.|++++|.+.|++.. ..|+ ..+|+.+-.+|.+.|++++|.+.+++..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 347778889999999999999998743 2333 6789999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHcCchhhhhcccc
Q 043686 125 PLSAENYIMLSNWYAAEAKWDVVNQAYS 152 (282)
Q Consensus 125 p~~~~~~~~Li~~y~~~g~~~~A~~~~~ 152 (282)
|+++..|..+..+|.+.|++++|...+.
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~ 331 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLK 331 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999999999999988866443
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.0013 Score=45.69 Aligned_cols=90 Identities=12% Similarity=0.031 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-------HHHH
Q 043686 29 IDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-------PEVL 97 (282)
Q Consensus 29 p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-------~~~~ 97 (282)
++...+..+-..+.+.|++++|.+.|+ ....| +...|..+..+|.+.|++++|.+.|++.. ..|+ ...+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 455677778888889999999999998 44555 57788889999999999999999998854 5665 5566
Q ss_pred HHHHHHHHhcCChhHHHHHHH
Q 043686 98 RALLEGCRIHVQVKTGKRVID 118 (282)
Q Consensus 98 ~~li~~~~~~g~~~~A~~~~~ 118 (282)
..+..++...|+.++|.+.|+
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 666667777777666655443
No 196
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.10 E-value=0.005 Score=55.04 Aligned_cols=150 Identities=10% Similarity=0.081 Sum_probs=106.3
Q ss_pred HHHHHHHHHhcCC---CHHHHHHHhh---ccCCCChhHHHHHHHHHHcc----CChHHHHHHHHhcCCCCCHHHHHHHHH
Q 043686 33 TFAAVLHACSTAG---MVEEGWLCFN---RIRSPKVTHHALMVSVLARA----GLFDEARIFIQEYHMERYPEVLRALLE 102 (282)
Q Consensus 33 ty~~ll~a~~~~g---~~~~a~~l~~---~g~~p~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~p~~~~~~~li~ 102 (282)
.+..|-..|.+.| +.++|.+.|+ ..-.++...+..|...|.+. ++.++|.+.|++.. .-+...++.|-.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~ 256 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQ 256 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 7777777888899 9999999998 33334555556777777665 79999999999976 445778888877
Q ss_pred H-H--HhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC-----chhhhhcccceeeecCeE-------EEEecCC
Q 043686 103 G-C--RIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEA-----KWDVVNQAYSWIEFRNKV-------HVFGTGD 167 (282)
Q Consensus 103 ~-~--~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g-----~~~~A~~~~~~~~~~~~~-------~~~i~~~ 167 (282)
. | ...++.++|.+.|++..+.. ++..+..|-.+|. .| +.++|...+..-- .+.. ..+..|.
T Consensus 257 ~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~ 332 (452)
T 3e4b_A 257 LLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGY 332 (452)
T ss_dssp HHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTT
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCC
Confidence 7 4 56899999999999987543 5688888888887 55 8888888555433 3222 1223333
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCC
Q 043686 168 VSCPRSEGIFWELQSLMKKMEGDS 191 (282)
Q Consensus 168 ~~~~~~~~a~~~~~~l~~~M~~~g 191 (282)
....+.++|. .+|++-.+.|
T Consensus 333 g~~~d~~~A~----~~~~~Aa~~g 352 (452)
T 3e4b_A 333 LGKVYPQKAL----DHLLTAARNG 352 (452)
T ss_dssp TSSCCHHHHH----HHHHHHHTTT
T ss_pred CCCcCHHHHH----HHHHHHHhhC
Confidence 3344566665 6666665555
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.09 E-value=0.0049 Score=45.47 Aligned_cols=117 Identities=6% Similarity=-0.032 Sum_probs=90.3
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccC-CCChhHHHHHHHHHHc----cC
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIR-SPKVTHHALMVSVLAR----AG 76 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~-~p~~~~~~~li~~~~~----~g 76 (282)
..+..-.++.++|++.|++..+ .| .|+.. |-..|...+.+++|.++|+... .-+...+..|-..|.+ .+
T Consensus 2 ~~G~g~~~d~~~A~~~~~~aa~-~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~ 75 (138)
T 1klx_A 2 VGGGTVKKDLKKAIQYYVKACE-LN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKK 75 (138)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHH-TT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCC
T ss_pred CCCcCCccCHHHHHHHHHHHHc-CC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCc
Confidence 4455667789999999999988 77 34443 5556667788999999999111 1356778888888887 88
Q ss_pred ChHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 043686 77 LFDEARIFIQEYHMERYPEVLRALLEGCRI----HVQVKTGKRVIDQLCELK 124 (282)
Q Consensus 77 ~~~~A~~l~~~m~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 124 (282)
+.++|.+.|++.--.-+..++..|-..|.. .++.++|.+.|++..+..
T Consensus 76 d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 76 DLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 999999999985424567888889888988 899999999999988654
No 198
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.00 E-value=0.0011 Score=59.15 Aligned_cols=78 Identities=12% Similarity=0.065 Sum_probs=62.9
Q ss_pred ccCChHHHHHHHHhcC------CC---CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCC---hhHHHHHH
Q 043686 74 RAGLFDEARIFIQEYH------ME---RY-PEVLRALLEGCRIHVQVKTGKRVIDQLCE-----LKPLS---AENYIMLS 135 (282)
Q Consensus 74 ~~g~~~~A~~l~~~m~------~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~p~~---~~~~~~Li 135 (282)
+.|++++|+.++++.. +. |+ ..+++.|...|...|++++|+.++++... +.|++ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4678999999998731 33 44 57899999999999999999999999872 34443 56788999
Q ss_pred HHHHHcCchhhhhccc
Q 043686 136 NWYAAEAKWDVVNQAY 151 (282)
Q Consensus 136 ~~y~~~g~~~~A~~~~ 151 (282)
..|...|++++|+..+
T Consensus 390 ~~~~~qg~~~eA~~~~ 405 (433)
T 3qww_A 390 RLYMGLENKAAGEKAL 405 (433)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHhccCHHHHHHHH
Confidence 9999999999997644
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.97 E-value=0.00057 Score=52.01 Aligned_cols=71 Identities=15% Similarity=0.053 Sum_probs=60.0
Q ss_pred HccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCh----------hHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 043686 73 ARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQV----------KTGKRVIDQLCELKPLSAENYIMLSNWYAA 140 (282)
Q Consensus 73 ~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~ 140 (282)
.+.+.+++|.+.++... ..|+ ...|+.+-.++...+++ ++|...|++..+++|++..+|..|-.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 45567889999998854 5664 88999888888888775 599999999999999999999999999998
Q ss_pred cCc
Q 043686 141 EAK 143 (282)
Q Consensus 141 ~g~ 143 (282)
.|+
T Consensus 93 lg~ 95 (158)
T 1zu2_A 93 FAF 95 (158)
T ss_dssp HHH
T ss_pred hcc
Confidence 864
No 200
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.96 E-value=0.0017 Score=57.87 Aligned_cols=84 Identities=7% Similarity=0.025 Sum_probs=67.3
Q ss_pred HHHHHHccCChHHHHHHHHhcC------CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCC---hh
Q 043686 68 MVSVLARAGLFDEARIFIQEYH------MERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCE-----LKPLS---AE 129 (282)
Q Consensus 68 li~~~~~~g~~~~A~~l~~~m~------~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~p~~---~~ 129 (282)
.+.-+.+.|++++|++++++.. ..|+ ..+++.|...|...|++++|+.++++... ..|++ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3566778899999999998742 3333 57899999999999999999999999872 34443 46
Q ss_pred HHHHHHHHHHHcCchhhhhccc
Q 043686 130 NYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 130 ~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
+++.|...|...|++++|+..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~ 394 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNL 394 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHH
Confidence 7889999999999999997643
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.87 E-value=0.0032 Score=41.87 Aligned_cols=58 Identities=21% Similarity=0.215 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686 94 PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 94 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
...|..+...|.+.|++++|...|++.....|+++.++..+...|.+.|++++|...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 66 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5688889999999999999999999999999999899999999999999988886644
No 202
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.82 E-value=0.012 Score=55.48 Aligned_cols=130 Identities=6% Similarity=-0.029 Sum_probs=96.8
Q ss_pred hhcCChHHHHHHHHHhHHhC-C-CCCCHHHHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHHHHHHHccCChHH
Q 043686 6 SLHGQRELGLSLFSELEKKS-S-IEIDPLTFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALMVSVLARAGLFDE 80 (282)
Q Consensus 6 ~~~g~~~~A~~lf~~m~~~~-g-~~p~~~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~li~~~~~~g~~~~ 80 (282)
-+.|..+.|..+|.+..+ . + ..+......+.+.-. ..++.+.|+.+|+ .-+.-+...+...++...+.|+.+.
T Consensus 445 rR~~~l~~AR~vf~~A~~-~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRR-LKKLVTPDIYLENAYIEYH-ISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHCHHHHHHHHHHHHH-TGGGSCTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHcCCHHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHH
Confidence 456889999999999987 4 2 233333333333322 2355999999999 2233356667788888889999999
Q ss_pred HHHHHHhcC-CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686 81 ARIFIQEYH-MER----YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY 138 (282)
Q Consensus 81 A~~l~~~m~-~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y 138 (282)
|..+|+... ..| ....|...+.-=.+.|+.+.+.++.+++.+..|++ .....+++=|
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~-~~~~~f~~ry 584 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV-NKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC-CHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-cHHHHHHHHh
Confidence 999999854 334 25789999999999999999999999999999976 5556666655
No 203
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.77 E-value=0.058 Score=45.63 Aligned_cols=133 Identities=4% Similarity=-0.158 Sum_probs=101.0
Q ss_pred cCChHHHHHHHHHhHHhCCCCCCHHH-HHHHHHHHhcCC--CHHHHHHHhh--ccCCC-ChhHHHHHHHHH----Hcc--
Q 043686 8 HGQRELGLSLFSELEKKSSIEIDPLT-FAAVLHACSTAG--MVEEGWLCFN--RIRSP-KVTHHALMVSVL----ARA-- 75 (282)
Q Consensus 8 ~g~~~~A~~lf~~m~~~~g~~p~~~t-y~~ll~a~~~~g--~~~~a~~l~~--~g~~p-~~~~~~~li~~~----~~~-- 75 (282)
....++|+++++++.. +-|+..| |+.=-..+...| +++++.++++ ....| +..+|+.--..+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~---~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGIN---ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHH---HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc
Confidence 3344689999999988 6676654 555555667777 9999999999 44555 455666554444 555
Q ss_pred -CChHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHhcCCCChhHHHHHHHHHHHcCc
Q 043686 76 -GLFDEARIFIQEYH-M-ERYPEVLRALLEGCRIHVQVK--TGKRVIDQLCELKPLSAENYIMLSNWYAAEAK 143 (282)
Q Consensus 76 -g~~~~A~~l~~~m~-~-~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~ 143 (282)
++++++.++++++- . ..|-.+|+.-.-.+.+.|+++ ++.+.++++.+.+|.|...|+--...+.+.++
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 78999999999875 3 446889999888888899988 99999999999999998888865555555444
No 204
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.62 E-value=0.059 Score=45.55 Aligned_cols=135 Identities=5% Similarity=-0.108 Sum_probs=105.9
Q ss_pred ChHHHHHHHHHhHHhCCCCCCH-HHHHHHHHHH----hcC---CCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCCh
Q 043686 10 QRELGLSLFSELEKKSSIEIDP-LTFAAVLHAC----STA---GMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLF 78 (282)
Q Consensus 10 ~~~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~----~~~---g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~ 78 (282)
++++++++++.+.. .-|+. ..|+.=-..+ .+. ++++++.++++ ....| |-..|+--.-.+.+.|..
T Consensus 84 ~~~eeL~~~~~~L~---~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~ 160 (306)
T 3dra_A 84 NLYDELDWCEEIAL---DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLH 160 (306)
T ss_dssp CHHHHHHHHHHHHH---HCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCT
T ss_pred cHHHHHHHHHHHHH---HCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Confidence 89999999999987 34544 3444422222 333 78999999998 44555 678888888888888988
Q ss_pred H--HHHHHHHhcC-CC-CCHHHHHHHHHHHHhcCC------hhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhh
Q 043686 79 D--EARIFIQEYH-ME-RYPEVLRALLEGCRIHVQ------VKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVV 147 (282)
Q Consensus 79 ~--~A~~l~~~m~-~~-p~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A 147 (282)
+ ++.+.++++- .. .|-..|+.--....+.++ ++++.+.++++...+|.|...|+-+-..+.+.|+..++
T Consensus 161 ~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~ 239 (306)
T 3dra_A 161 NDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQ 239 (306)
T ss_dssp TCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGG
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHH
Confidence 8 9999999875 34 468899887777777776 89999999999999999999999999999998875443
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.36 E-value=0.035 Score=51.16 Aligned_cols=133 Identities=8% Similarity=-0.113 Sum_probs=108.6
Q ss_pred hHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCC--CHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccC-ChHHHHH
Q 043686 11 RELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAG--MVEEGWLCFN--RIRSP-KVTHHALMVSVLARAG-LFDEARI 83 (282)
Q Consensus 11 ~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g--~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g-~~~~A~~ 83 (282)
+++|++.++++.+ ..| +..+|+.=--++.+.| +++++.+.++ ....| |-..|+---..+.+.| ..+++.+
T Consensus 89 ~~~eL~~~~~~l~---~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLR---VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHH
Confidence 8999999999987 334 4457777666777888 6799999999 44555 5778888888888889 8999999
Q ss_pred HHHhcC-CCC-CHHHHHHHHHHHHhc--------------CChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhh
Q 043686 84 FIQEYH-MER-YPEVLRALLEGCRIH--------------VQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDV 146 (282)
Q Consensus 84 l~~~m~-~~p-~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~ 146 (282)
.++++- ..| |..+|+.....+.+. +.+++|.+.+++.....|.+...|+-+-..+.+.++.++
T Consensus 166 ~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 999875 555 588999888877663 567999999999999999999999999999988888555
No 206
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.35 E-value=0.034 Score=48.18 Aligned_cols=118 Identities=9% Similarity=-0.115 Sum_probs=81.9
Q ss_pred hHHHHHHHHHhHHhCCCCCCH-HHHHHHHHHHh----cCC----CHHHHHHHhh-----ccCCCChhHHHHHHHHHHccC
Q 043686 11 RELGLSLFSELEKKSSIEIDP-LTFAAVLHACS----TAG----MVEEGWLCFN-----RIRSPKVTHHALMVSVLARAG 76 (282)
Q Consensus 11 ~~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~~----~~g----~~~~a~~l~~-----~g~~p~~~~~~~li~~~~~~g 76 (282)
..+|+.+|++..+ ..|+- ..|..+--++. ..+ ......+.+. ..-..+..+|.++-..+...|
T Consensus 215 ~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~g 291 (372)
T 3ly7_A 215 LNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKG 291 (372)
T ss_dssp HHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCC
Confidence 4789999999887 66874 23333222221 111 1111111111 222446778888877777779
Q ss_pred ChHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHH
Q 043686 77 LFDEARIFIQEYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYI 132 (282)
Q Consensus 77 ~~~~A~~l~~~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ 132 (282)
++++|.+.+++.. ..|+...|..+-..+.-.|+.++|.+.|++...++|.. .||.
T Consensus 292 d~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~-~t~~ 347 (372)
T 3ly7_A 292 KTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA-NTLY 347 (372)
T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH-HHHH
T ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-ChHH
Confidence 9999999999976 67898888777888999999999999999999999954 5654
No 207
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.33 E-value=0.031 Score=38.20 Aligned_cols=79 Identities=13% Similarity=0.093 Sum_probs=59.1
Q ss_pred CChhHHHHHHHHHHccCC---hHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHH
Q 043686 60 PKVTHHALMVSVLARAGL---FDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIML 134 (282)
Q Consensus 60 p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~L 134 (282)
+|...+..+..++...++ .++|..+|++.- ..|+ +.++..+-..+.+.|++++|...|+++.+..|++ .....+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~-~~~~~i 82 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN-LDRVTI 82 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT-CCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-ccHHHH
Confidence 456677777777754444 689999998854 6776 7888888889999999999999999999888863 444455
Q ss_pred HHHHH
Q 043686 135 SNWYA 139 (282)
Q Consensus 135 i~~y~ 139 (282)
.....
T Consensus 83 ~~~I~ 87 (93)
T 3bee_A 83 IESIN 87 (93)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 208
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.33 E-value=0.041 Score=38.18 Aligned_cols=74 Identities=12% Similarity=0.050 Sum_probs=59.3
Q ss_pred ChhHHHHHHHHHHccCChHHHHHHHHhcC--C-------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHH
Q 043686 61 KVTHHALMVSVLARAGLFDEARIFIQEYH--M-------ERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENY 131 (282)
Q Consensus 61 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~--~-------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~ 131 (282)
+..-+..|...+.+.|+++.|...|++.. . .+...+|..|..+|.+.|++++|...+++...+.|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 44556678888889999999999887732 0 13477899999999999999999999999999999886664
Q ss_pred HHH
Q 043686 132 IML 134 (282)
Q Consensus 132 ~~L 134 (282)
+.+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 443
No 209
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=96.27 E-value=0.084 Score=45.13 Aligned_cols=133 Identities=14% Similarity=-0.001 Sum_probs=98.0
Q ss_pred hhcCChH-HHHHHHHHhHHhCCCCCCHHH-HHH---HHHHHhcCC-------CHHHHHHHhh--ccCCC-ChhHHHHHHH
Q 043686 6 SLHGQRE-LGLSLFSELEKKSSIEIDPLT-FAA---VLHACSTAG-------MVEEGWLCFN--RIRSP-KVTHHALMVS 70 (282)
Q Consensus 6 ~~~g~~~-~A~~lf~~m~~~~g~~p~~~t-y~~---ll~a~~~~g-------~~~~a~~l~~--~g~~p-~~~~~~~li~ 70 (282)
.+.|.++ +|++++..+.. +-|+..| |+. ++....+.. .++++..+++ ....| +..+|+.---
T Consensus 40 ~~~~e~s~eaL~~t~~~L~---~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4556665 79999999987 6676654 333 333333321 1567777777 44455 6778887777
Q ss_pred HHHccC--ChHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 043686 71 VLARAG--LFDEARIFIQEYH-M-ERYPEVLRALLEGCRIHVQ-VKTGKRVIDQLCELKPLSAENYIMLSNWYAAE 141 (282)
Q Consensus 71 ~~~~~g--~~~~A~~l~~~m~-~-~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~ 141 (282)
.+.+.| .++++.++++++- . ..|-.+|+.---...+.|. ++++.+.++++.+.+|.|...|+-....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 777888 4899999999875 3 4468899988888888888 58999999999999999988998776666655
No 210
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=96.23 E-value=0.1 Score=44.93 Aligned_cols=134 Identities=7% Similarity=-0.053 Sum_probs=103.0
Q ss_pred hcCChHHHHHHHHHhHHhCCCCCCHH-HHHHHHHHHhcCC-CHHHHHHHhh--ccCCC-ChhHHHHHHHHHHcc-C-ChH
Q 043686 7 LHGQRELGLSLFSELEKKSSIEIDPL-TFAAVLHACSTAG-MVEEGWLCFN--RIRSP-KVTHHALMVSVLARA-G-LFD 79 (282)
Q Consensus 7 ~~g~~~~A~~lf~~m~~~~g~~p~~~-ty~~ll~a~~~~g-~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~-g-~~~ 79 (282)
+.+..++|+++++++.. +.|+.. .|+.=-..+...| .++++.++++ ....| +..+|+.--..+.+. + +.+
T Consensus 66 ~~e~se~AL~lt~~~L~---~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 66 KEEKSERALELTEIIVR---MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp TTCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred hCCCCHHHHHHHHHHHH---hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH
Confidence 44556789999999988 556655 4555444566667 5999999999 55556 567888777777776 7 889
Q ss_pred HHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChh--------HHHHHHHHHHhcCCCChhHHHHHHHHHHHcCc
Q 043686 80 EARIFIQEYH-MER-YPEVLRALLEGCRIHVQVK--------TGKRVIDQLCELKPLSAENYIMLSNWYAAEAK 143 (282)
Q Consensus 80 ~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~ 143 (282)
++.++++++- ..| |-.+|+.-.-.+.+.|.++ ++.+.++++.+.+|.|...|+-....+.+.++
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 9999999976 444 6889988777777777777 99999999999999998889877777766654
No 211
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.18 E-value=0.036 Score=51.13 Aligned_cols=129 Identities=10% Similarity=-0.069 Sum_probs=100.6
Q ss_pred ChHHHHHHHHHhHHhCCCCCCHH-HHHHHHHHHhcCCC----------HHHHHHHhh--ccCCC-ChhHHHHHHHHHHcc
Q 043686 10 QRELGLSLFSELEKKSSIEIDPL-TFAAVLHACSTAGM----------VEEGWLCFN--RIRSP-KVTHHALMVSVLARA 75 (282)
Q Consensus 10 ~~~~A~~lf~~m~~~~g~~p~~~-ty~~ll~a~~~~g~----------~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~ 75 (282)
..++|++.++++.. +.|+.. .|+.=-.++.+.|+ ++++.+.++ ....| +..+|+.---.+.+.
T Consensus 44 ~~eeal~~~~~~l~---~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34578999999887 557654 44443333444444 888888888 55556 577888888888899
Q ss_pred C--ChHHHHHHHHhcC-CC-CCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 043686 76 G--LFDEARIFIQEYH-ME-RYPEVLRALLEGCRIHV-QVKTGKRVIDQLCELKPLSAENYIMLSNWYAAE 141 (282)
Q Consensus 76 g--~~~~A~~l~~~m~-~~-p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~ 141 (282)
| ++++|.+.++++- .. .|..+|+.---.+.+.| .++++.+.++++.+.+|.+...|+-....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 9 7799999999975 44 46899999888888888 899999999999999999999999877777764
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.87 E-value=0.019 Score=38.92 Aligned_cols=54 Identities=11% Similarity=0.333 Sum_probs=47.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCChh-HHHHHHHHHHHcCchhhhhcccce
Q 043686 100 LLEGCRIHVQVKTGKRVIDQLCELKPLSAE-NYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 100 li~~~~~~g~~~~A~~~~~~m~~~~p~~~~-~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
....+.+.|++++|.+.|++..+..|+++. .|..+...|.+.|++++|...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 60 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445688899999999999999999999888 999999999999999998765543
No 213
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=95.85 E-value=0.22 Score=42.89 Aligned_cols=135 Identities=9% Similarity=-0.040 Sum_probs=102.7
Q ss_pred hcC-ChHHHHHHHHHhHHhCCCCCCH-HHHHHHHHHHhcC-C-CHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686 7 LHG-QRELGLSLFSELEKKSSIEIDP-LTFAAVLHACSTA-G-MVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD 79 (282)
Q Consensus 7 ~~g-~~~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~~~~-g-~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~ 79 (282)
..| .+++++++++.+.. ..|+. ..|+.=--.+.+. + +.+++.++++ ....| |-..|+--.-.+.+.|..+
T Consensus 100 ~l~~~l~eEL~~~~~~L~---~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 100 SLNKSLEDELRLMNEFAV---QNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG 176 (349)
T ss_dssp HTTCCHHHHHHHHHHHHH---TTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HhhhhHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence 345 58999999999987 34544 4566544444444 5 7889999888 55555 5677776666666666666
Q ss_pred --------HHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCC-------hhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 043686 80 --------EARIFIQEYH-MER-YPEVLRALLEGCRIHVQ-------VKTGKRVIDQLCELKPLSAENYIMLSNWYAAEA 142 (282)
Q Consensus 80 --------~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g 142 (282)
++.+.++++- ..| |..+|+..-..+.+.++ ++++.+.++++....|.|...|+-+-..+.+.|
T Consensus 177 ~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 177 RISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 8899888865 344 68899999888888886 789999999999999999999999888888887
Q ss_pred ch
Q 043686 143 KW 144 (282)
Q Consensus 143 ~~ 144 (282)
+-
T Consensus 257 ~~ 258 (349)
T 3q7a_A 257 LP 258 (349)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 214
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.74 E-value=0.023 Score=41.75 Aligned_cols=98 Identities=7% Similarity=-0.064 Sum_probs=75.3
Q ss_pred CCHHHHHHHhh----ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChhHHHHH
Q 043686 45 GMVEEGWLCFN----RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRI----HVQVKTGKRV 116 (282)
Q Consensus 45 g~~~~a~~l~~----~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~----~g~~~~A~~~ 116 (282)
++.++|.++|+ .| .|+.. |-..|.+.+.+++|.+.|++.--.-+...++.|-..|.. .++.++|.+.
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 46788899888 44 33332 777888888999999999985424568888989999988 8999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHH----cCchhhhhc
Q 043686 117 IDQLCELKPLSAENYIMLSNWYAA----EAKWDVVNQ 149 (282)
Q Consensus 117 ~~~m~~~~p~~~~~~~~Li~~y~~----~g~~~~A~~ 149 (282)
|++..+.. ++..+..|-.+|.. .++.++|.+
T Consensus 84 ~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 118 (138)
T 1klx_A 84 YSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVK 118 (138)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence 99988653 45788889899977 555555543
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.65 E-value=0.058 Score=36.81 Aligned_cols=61 Identities=10% Similarity=0.059 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccc
Q 043686 92 RYPEVLRALLEGCRIHVQ---VKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYS 152 (282)
Q Consensus 92 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~ 152 (282)
+|...+..+-.++...++ .++|..++++..+.+|+++.....|-..+.+.|++++|...+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~ 67 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWV 67 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 457788888888765544 7999999999999999999999999999999999888855443
No 216
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.39 E-value=0.039 Score=49.95 Aligned_cols=90 Identities=10% Similarity=-0.032 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHhcCCCC--CHHHH--HHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686 63 THHALMVSVLARAGLFDEARIFIQEYHMER--YPEVL--RALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY 138 (282)
Q Consensus 63 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~p--~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y 138 (282)
..|...++.+-+.+.++.|.++|+... .| +..+| .+.+.-.. .++.+.|..+|+...+..|+++..+...++..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A~-~~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIELG-NEGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHT-TSCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhh-CCCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456666666667888999999999875 33 23333 33343333 34799999999999877787777778888888
Q ss_pred HHcCchhhhhccccee
Q 043686 139 AAEAKWDVVNQAYSWI 154 (282)
Q Consensus 139 ~~~g~~~~A~~~~~~~ 154 (282)
.+.|+.+.|..+++..
T Consensus 365 ~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 365 LRIGDEENARALFKRL 380 (493)
T ss_dssp HHHTCHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHH
Confidence 8999999999877775
No 217
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=95.28 E-value=0.3 Score=41.64 Aligned_cols=128 Identities=8% Similarity=-0.121 Sum_probs=97.5
Q ss_pred hHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCC--CHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCC-hHHHHH
Q 043686 11 RELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAG--MVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGL-FDEARI 83 (282)
Q Consensus 11 ~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g--~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~-~~~A~~ 83 (282)
+++++.+++.+.. ..| +..+|+.=--.+.+.| .++++.++++ ....| |-..|+--.-.+.+.|. ++++.+
T Consensus 90 l~~EL~~~~~~L~---~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLR---VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 6789999999887 334 5567766555566666 4889999888 55555 67788877777888888 589999
Q ss_pred HHHhcC-CCC-CHHHHHHHHHHHHhc--------------CChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 043686 84 FIQEYH-MER-YPEVLRALLEGCRIH--------------VQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAE 141 (282)
Q Consensus 84 l~~~m~-~~p-~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~ 141 (282)
.++++- ..| |..+|+..-..+.+. +.++++.+.+++.....|.|...|+-+-..+.+.
T Consensus 167 ~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 167 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 998865 344 688898877766655 5688999999999999999999998766666554
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.16 E-value=0.011 Score=56.21 Aligned_cols=97 Identities=12% Similarity=0.083 Sum_probs=66.5
Q ss_pred hcCChHHHHH-HHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHH
Q 043686 7 LHGQRELGLS-LFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFI 85 (282)
Q Consensus 7 ~~g~~~~A~~-lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 85 (282)
..+++++|.+ ++..+ |+......++..+.+.|..++|.++.+ +. ..-.+.....|++++|.++.
T Consensus 611 ~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~-----~~---~~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISP-----DQ---DQKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCC-----CH---HHHHHHHHHHTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCC-----Cc---chheehhhhcCCHHHHHHHH
Confidence 3566666655 44222 212233777777888888888887775 11 11133456678889988887
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 86 QEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 86 ~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
+.+. +...|..|-..+.+.|+++.|++.|..+.
T Consensus 676 ~~~~---~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 676 TDES---AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp TTCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HhhC---cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 7664 56788888888999999999999888774
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.09 E-value=0.11 Score=38.92 Aligned_cols=73 Identities=10% Similarity=0.054 Sum_probs=56.2
Q ss_pred CChhHHHHHHHHHHccC---ChHHHHHHHHhcC-CC-C--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHH
Q 043686 60 PKVTHHALMVSVLARAG---LFDEARIFIQEYH-ME-R--YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYI 132 (282)
Q Consensus 60 p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~-~~-p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ 132 (282)
++..+.-.+-.++++.+ +++++..+|++.- .. | +...+-.|--+|.+.|++++|.+.++...+++|++.-..+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 56667777777888877 6678888888753 23 5 2556666778899999999999999999999998854443
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.86 E-value=0.56 Score=39.17 Aligned_cols=86 Identities=6% Similarity=-0.094 Sum_probs=63.0
Q ss_pred hhHHHHHHH-HHHcc--CC------hHHHHHHHHhcC-CCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHHhc
Q 043686 62 VTHHALMVS-VLARA--GL------FDEARIFIQEYH-MERY---PEVLRALLEGCRI-----HVQVKTGKRVIDQLCEL 123 (282)
Q Consensus 62 ~~~~~~li~-~~~~~--g~------~~~A~~l~~~m~-~~p~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~ 123 (282)
...|..++. .+... |. +..|...+++.. +.|+ -..|.+|..-|.+ .|+.++|.+.|++..++
T Consensus 154 ~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L 233 (301)
T 3u64_A 154 TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY 233 (301)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh
Confidence 456665554 44442 32 345666666533 7888 5689999999999 59999999999999999
Q ss_pred CCCC-hhHHHHHHHHHHHc-Cchhhh
Q 043686 124 KPLS-AENYIMLSNWYAAE-AKWDVV 147 (282)
Q Consensus 124 ~p~~-~~~~~~Li~~y~~~-g~~~~A 147 (282)
.|+. ..++....+.|+.. |+.++|
T Consensus 234 nP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 234 CSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp CCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred CCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 9964 78888888888774 665555
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.83 E-value=0.12 Score=44.64 Aligned_cols=124 Identities=12% Similarity=0.064 Sum_probs=84.4
Q ss_pred CCCCHHHHHHHHHHHhc--C---CCHHHHHHHhh--ccCCCC-hhHHHHHHHHHH----ccC----C---hHHHHHHHHh
Q 043686 27 IEIDPLTFAAVLHACST--A---GMVEEGWLCFN--RIRSPK-VTHHALMVSVLA----RAG----L---FDEARIFIQE 87 (282)
Q Consensus 27 ~~p~~~ty~~ll~a~~~--~---g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~----~~g----~---~~~A~~l~~~ 87 (282)
.+.|...|...+.+... . ....+|.++|+ ..+.|+ ...|..+--+|. ..+ . ...|.+-...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 34566778888876543 2 33589999999 677786 455554444442 111 1 1122222222
Q ss_pred cC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686 88 YH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 88 m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
+. -..+..+|.++--.+...|++++|...++++..++| +...|..+-..+.-.|+.++|...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~ 333 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAY 333 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 33 244588888887777778999999999999999998 5678888899999999988886533
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.68 E-value=0.21 Score=47.37 Aligned_cols=98 Identities=8% Similarity=-0.055 Sum_probs=67.5
Q ss_pred HhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043686 41 CSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQL 120 (282)
Q Consensus 41 ~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 120 (282)
....|++++|.++.+. -.+...|..|-..+.+.|+++.|++.|..+. . |..+..-|...|+.+...++-+..
T Consensus 662 ~l~~~~~~~A~~~~~~--~~~~~~W~~la~~al~~~~~~~A~~~y~~~~-d-----~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTD--ESAEMKWRALGDASLQRFNFKLAIEAFTNAH-D-----LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHTCHHHHHHHHTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-C-----HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHh--hCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc-C-----hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 4567999999999872 2456899999999999999999999999987 2 444555566677776655554444
Q ss_pred HhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686 121 CELKPLSAENYIMLSNWYAAEAKWDVVNQAY 151 (282)
Q Consensus 121 ~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~ 151 (282)
.. .. -++.....|.+.|++++|.+.+
T Consensus 734 ~~-~~----~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 734 ET-TG----KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HH-TT----CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HH-cC----chHHHHHHHHHcCCHHHHHHHH
Confidence 32 11 2344444566666766665543
No 223
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=94.42 E-value=0.35 Score=43.64 Aligned_cols=73 Identities=14% Similarity=0.141 Sum_probs=37.3
Q ss_pred CHHHHHHHhh---ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 46 MVEEGWLCFN---RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 46 ~~~~a~~l~~---~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
+.+.|+.+|+ ..+ |+ ...+...++...+.|+.+.|..+|+... .....|...+.-=.+.|+.+.+.++++++.
T Consensus 335 d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 335 SRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4556666665 111 22 2233444555555566666666666542 234555555554455566665555555554
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.05 E-value=0.57 Score=32.14 Aligned_cols=65 Identities=11% Similarity=0.048 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHhh-------c---cCCCChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC
Q 043686 29 IDPLTFAAVLHACSTAGMVEEGWLCFN-------R---IRSPKVTHHALMVSVLARAGLFDEARIFIQEYH-MERY 93 (282)
Q Consensus 29 p~~~ty~~ll~a~~~~g~~~~a~~l~~-------~---g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~ 93 (282)
.+...+-.|-..+-+.|+++.|..+|+ . .-.+...++..|..+|.+.|++++|...+++.. ..|+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 455566677778888899999998888 1 112346788999999999999999999999865 6776
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.04 E-value=0.34 Score=40.48 Aligned_cols=79 Identities=13% Similarity=0.106 Sum_probs=66.4
Q ss_pred HHHHHHHhh--ccCCCC---hhHHHHHHHHHHcc-----CChHHHHHHHHhcC-CCCC--HHHHHHHHHHHHhc-CChhH
Q 043686 47 VEEGWLCFN--RIRSPK---VTHHALMVSVLARA-----GLFDEARIFIQEYH-MERY--PEVLRALLEGCRIH-VQVKT 112 (282)
Q Consensus 47 ~~~a~~l~~--~g~~p~---~~~~~~li~~~~~~-----g~~~~A~~l~~~m~-~~p~--~~~~~~li~~~~~~-g~~~~ 112 (282)
..+|...++ ..+.|+ ...|..|...|.+. |+.++|++.|++.. +.|+ ..++......+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 556666666 677777 56899999999994 99999999999954 7784 88899999999995 99999
Q ss_pred HHHHHHHHHhcCC
Q 043686 113 GKRVIDQLCELKP 125 (282)
Q Consensus 113 A~~~~~~m~~~~p 125 (282)
|.+.+++.....|
T Consensus 259 a~~~L~kAL~a~p 271 (301)
T 3u64_A 259 FDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHCCG
T ss_pred HHHHHHHHHcCCC
Confidence 9999999997655
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=91.63 E-value=0.29 Score=36.70 Aligned_cols=84 Identities=7% Similarity=-0.048 Sum_probs=62.3
Q ss_pred cCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCC---CHHHHHHHhh--ccCC-C--ChhHHHHHHHHHHccCChH
Q 043686 8 HGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAG---MVEEGWLCFN--RIRS-P--KVTHHALMVSVLARAGLFD 79 (282)
Q Consensus 8 ~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g---~~~~a~~l~~--~g~~-p--~~~~~~~li~~~~~~g~~~ 79 (282)
......+.+-|.+... .|. ++..+--.+--+++++. ++++|..+++ .... | +...+-.|--+|.|.|+++
T Consensus 11 ~~~l~~~~~~y~~e~~-~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKA-AGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHHH-TTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHc-cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHH
Confidence 3455677788887766 555 67777777777888888 6779999999 2223 5 2445556777789999999
Q ss_pred HHHHHHHhcC-CCCC
Q 043686 80 EARIFIQEYH-MERY 93 (282)
Q Consensus 80 ~A~~l~~~m~-~~p~ 93 (282)
+|.+.++..- ++|+
T Consensus 89 ~A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCC
Confidence 9999999965 7785
No 227
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.59 E-value=0.98 Score=42.91 Aligned_cols=122 Identities=12% Similarity=0.048 Sum_probs=80.3
Q ss_pred HHHHHHHhcCCC-HHHHHHHhh--ccCCCChhH--HHHHHHHHHccCChH-HHHHHHHh-cC--------C-CCCHH---
Q 043686 35 AAVLHACSTAGM-VEEGWLCFN--RIRSPKVTH--HALMVSVLARAGLFD-EARIFIQE-YH--------M-ERYPE--- 95 (282)
Q Consensus 35 ~~ll~a~~~~g~-~~~a~~l~~--~g~~p~~~~--~~~li~~~~~~g~~~-~A~~l~~~-m~--------~-~p~~~--- 95 (282)
.++++-+.-.|+ .+.|..+|+ ..-.|...+ ..++|..+-+.++-+ +|.+++.+ +. . ..+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445666666666 588999998 334453333 235555555544322 44444433 21 1 12221
Q ss_pred --HH-HHHH----HHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeee
Q 043686 96 --VL-RALL----EGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEF 156 (282)
Q Consensus 96 --~~-~~li----~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~ 156 (282)
.+ ..|+ .-+...|+++-|+++-++...+-|.+-.+|..|...|.+.|+++.|.-..+.+|.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 11 1133 3366789999999999999999999999999999999999999999997766653
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=89.28 E-value=5.9 Score=30.28 Aligned_cols=67 Identities=10% Similarity=0.024 Sum_probs=42.7
Q ss_pred hcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 043686 42 STAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRV 116 (282)
Q Consensus 42 ~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~ 116 (282)
...|+++.|.++-+.. .+...|..|-+..-+.|+++-|++.|.... -|..|.--|.-.|+.++-.++
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQH------SFDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------CHHHHHHHHHHhCCHHHHHHH
Confidence 3557777777776511 245678888888888888888888887766 233444445555666554444
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=88.91 E-value=3.4 Score=29.74 Aligned_cols=72 Identities=11% Similarity=0.091 Sum_probs=52.0
Q ss_pred CChhHHHHHHHHHHccCChHH---HHHHHHhcC-CC-C-C-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHH
Q 043686 60 PKVTHHALMVSVLARAGLFDE---ARIFIQEYH-ME-R-Y-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENY 131 (282)
Q Consensus 60 p~~~~~~~li~~~~~~g~~~~---A~~l~~~m~-~~-p-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~ 131 (282)
|+..+--.+-.++.+..+.++ +..++++.- -. | + ....-.|--|+.|.|++++|.+.++.+.+++|++.-..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 666666666677777776665 888888754 22 4 2 23344566689999999999999999999999875443
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.86 E-value=2.4 Score=31.66 Aligned_cols=109 Identities=13% Similarity=0.057 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHhcCCCH------HHHHHHhh---ccCCCChhH-HHHHHHH------HHccCChHHHHHHHHhcC-CCC
Q 043686 30 DPLTFAAVLHACSTAGMV------EEGWLCFN---RIRSPKVTH-HALMVSV------LARAGLFDEARIFIQEYH-MER 92 (282)
Q Consensus 30 ~~~ty~~ll~a~~~~g~~------~~a~~l~~---~g~~p~~~~-~~~li~~------~~~~g~~~~A~~l~~~m~-~~p 92 (282)
|..+|-..+.-.-+.|+. ++.+++|+ ..++|+... |..-|.. |-..+++++|.++|+.+. ...
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK 91 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK 91 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence 556777777777777877 78888888 666665321 1111111 123489999999999874 211
Q ss_pred C-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686 93 Y-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY 138 (282)
Q Consensus 93 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y 138 (282)
. ...|-.--.-=.+.|++.+|.+++....++.|.......+.+.-+
T Consensus 92 kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl 138 (161)
T 4h7y_A 92 KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNL 138 (161)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhh
Confidence 2 666766666678899999999999999999986666666665544
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=88.69 E-value=5.7 Score=29.22 Aligned_cols=112 Identities=14% Similarity=0.099 Sum_probs=56.1
Q ss_pred hhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-ccCC--------------------CChhH
Q 043686 6 SLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-RIRS--------------------PKVTH 64 (282)
Q Consensus 6 ~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-~g~~--------------------p~~~~ 64 (282)
.-.|.+++..++..+... . .+..-||-+|--...+-+-+-..++++ -|-- -+...
T Consensus 18 ildG~v~qGveii~k~~~-s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~ 93 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITK-S---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEH 93 (172)
T ss_dssp HHTTCHHHHHHHHHHHHH-H---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHH
T ss_pred HHhhhHHHHHHHHHHHcC-C---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHH
Confidence 346777888888888766 2 344455555544444344333344443 1111 11222
Q ss_pred HHHHHHHHHccCChHHHHHHHHhc-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 65 HALMVSVLARAGLFDEARIFIQEY-H-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 65 ~~~li~~~~~~g~~~~A~~l~~~m-~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
..--++.+...|+-|.-.+++.++ . .+|+....-.+-++|.+.|+..+|.+++.++.
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 333344444555555555555552 2 34455555555556666666666666655554
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=87.54 E-value=5.2 Score=30.60 Aligned_cols=100 Identities=9% Similarity=0.070 Sum_probs=69.1
Q ss_pred hhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHH
Q 043686 6 SLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFI 85 (282)
Q Consensus 6 ~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 85 (282)
.+.|+++.|.++-+++ -+...|..|-......|+++-|.+.|. ..--+..+.-.|.-.|+.+.-.++-
T Consensus 16 L~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~-----~~~D~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQ-----TQHSFDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHH-----HTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHH-----HhCCHHHHHHHHHHhCCHHHHHHHH
Confidence 4689999999998775 357899999999999999999999998 1123455666666677776666554
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043686 86 QEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQL 120 (282)
Q Consensus 86 ~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 120 (282)
+.-..+-+ +|.-...+--.|+++++.++|.+.
T Consensus 84 ~iA~~~g~---~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 84 NIAQTRED---FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHTTC---HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHCcc---HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 43221212 344445566667788777776543
No 233
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.35 E-value=2.1 Score=29.50 Aligned_cols=47 Identities=11% Similarity=0.030 Sum_probs=22.3
Q ss_pred ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC--CCCCHHHHHHHHH
Q 043686 56 RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH--MERYPEVLRALLE 102 (282)
Q Consensus 56 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~--~~p~~~~~~~li~ 102 (282)
..+.|+..+..+-+.++.|.+++..|.++|+..+ +.+...+|..++.
T Consensus 39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 39 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 4444555555555555555555555555555443 3333334444443
No 234
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.34 E-value=1.3 Score=38.57 Aligned_cols=64 Identities=9% Similarity=0.058 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC--------CCCCHHH
Q 043686 33 TFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH--------MERYPEV 96 (282)
Q Consensus 33 ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~--------~~p~~~~ 96 (282)
....++.++...|+.+++..... ....| +...|..+|.+|.+.|+..+|.+.|+... +.|+..+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 45567777888899999887777 44555 67788999999999999999999887742 7787544
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.22 E-value=4.2 Score=38.65 Aligned_cols=110 Identities=10% Similarity=0.003 Sum_probs=71.4
Q ss_pred cCC-hHHHHHHHHHhHHhCCCCCCHHH--HHHHHHHHhcCCC-HHHHHHHhh----------ccCCCChh------HH-H
Q 043686 8 HGQ-RELGLSLFSELEKKSSIEIDPLT--FAAVLHACSTAGM-VEEGWLCFN----------RIRSPKVT------HH-A 66 (282)
Q Consensus 8 ~g~-~~~A~~lf~~m~~~~g~~p~~~t--y~~ll~a~~~~g~-~~~a~~l~~----------~g~~p~~~------~~-~ 66 (282)
.|+ ++.|+.+|+++.. . .|...+ ..+++..+.+.++ --+|.++.. ....+... .+ .
T Consensus 261 t~~~~~~a~~~le~L~~-~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 337 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTK-K--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMS 337 (754)
T ss_dssp CGGGHHHHHHHHHHHHH-H--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHh-h--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcch
Confidence 444 5789999999887 3 343332 3344444444442 223444443 12222211 11 1
Q ss_pred HHH----HHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043686 67 LMV----SVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQL 120 (282)
Q Consensus 67 ~li----~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 120 (282)
.|+ +.+-+.|+++-|.++-++.. +.|+ -.+|..|..+|.+.|+++.|+-.+..+
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 233 33556899999999998865 6776 889999999999999999999998876
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=84.06 E-value=9.2 Score=28.13 Aligned_cols=77 Identities=9% Similarity=-0.104 Sum_probs=61.2
Q ss_pred hhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHHHHHHHccCChHHHH
Q 043686 6 SLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALMVSVLARAGLFDEAR 82 (282)
Q Consensus 6 ~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~li~~~~~~g~~~~A~ 82 (282)
...|++.+.+.-|..+.. +..-+..-|+.+...|.-++--.+.. ....|+....-.+-.+|.|.|+..+|.
T Consensus 72 s~C~NlKrVi~C~~~~n~------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~ 145 (172)
T 1wy6_A 72 DKCQNLKSVVECGVINNT------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDAT 145 (172)
T ss_dssp GGCSCTHHHHHHHHHTTC------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhcHHHHHHHHHHhcc------hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHH
Confidence 456777777777777643 55667888899999999998888887 456678888889999999999999999
Q ss_pred HHHHhc
Q 043686 83 IFIQEY 88 (282)
Q Consensus 83 ~l~~~m 88 (282)
+++.+.
T Consensus 146 eLl~~A 151 (172)
T 1wy6_A 146 TLLIEA 151 (172)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998774
No 237
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.00 E-value=5.8 Score=28.92 Aligned_cols=49 Identities=10% Similarity=0.013 Sum_probs=37.5
Q ss_pred ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC--CCCCHHHHHHHHHHH
Q 043686 56 RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH--MERYPEVLRALLEGC 104 (282)
Q Consensus 56 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~--~~p~~~~~~~li~~~ 104 (282)
..+.|+..+..+-+.++.|.+++..|.++|+..+ +.+...+|..++.-.
T Consensus 82 ~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 82 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQEL 132 (152)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 7788888888888888888888888888888766 656656677776643
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=79.96 E-value=3.5 Score=35.74 Aligned_cols=93 Identities=13% Similarity=0.006 Sum_probs=66.5
Q ss_pred ChhHHHHHHHHHH---ccCChHHHHHHHHhcC------CCCC------H------------HHHHHHHHHHHhcCChhHH
Q 043686 61 KVTHHALMVSVLA---RAGLFDEARIFIQEYH------MERY------P------------EVLRALLEGCRIHVQVKTG 113 (282)
Q Consensus 61 ~~~~~~~li~~~~---~~g~~~~A~~l~~~m~------~~p~------~------------~~~~~li~~~~~~g~~~~A 113 (282)
|...|..++..-. ..|+.+.|.+.+++.- .-|+ + .+...++..+...|+.++|
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4455666555432 3578887777776631 1111 1 1233456677889999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686 114 KRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 114 ~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
..........+|-+...|-.||.+|.+.|+..+|.+.+..
T Consensus 191 ~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999988999999999999999998765433
No 239
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=77.51 E-value=0.0053 Score=54.96 Aligned_cols=161 Identities=12% Similarity=0.134 Sum_probs=102.2
Q ss_pred hhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHHHHH
Q 043686 6 SLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDEARI 83 (282)
Q Consensus 6 ~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~ 83 (282)
-+.|++.+|++-|-+-. |+..|.-+|.+..+.|..++-...+. +.-..+..+=+.||-+|+|.+++.+-++
T Consensus 65 L~~~~v~eAIdsyIkA~-------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEe 137 (624)
T 3lvg_A 65 LQKGMVKEAIDSYIKAD-------DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEE 137 (624)
T ss_dssp TTSSSCTTTTTSSCCCS-------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTS
T ss_pred HccCchHHHHHHHHhCC-------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHH
Confidence 34455666655543322 33457778888888888877777777 4444555666778888888887666544
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH---------------------hcCCCChhHHHHHHHHHHHcC
Q 043686 84 FIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLC---------------------ELKPLSAENYIMLSNWYAAEA 142 (282)
Q Consensus 84 l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------------------~~~p~~~~~~~~Li~~y~~~g 142 (282)
++. .||+.--..+-+-|...|.++.|.-+|..+. ..+.+++.||--+-.+|...+
T Consensus 138 fl~----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~ 213 (624)
T 3lvg_A 138 FIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK 213 (624)
T ss_dssp TTS----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSC
T ss_pred HHc----CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCch
Confidence 422 3554444555555666666666666655442 123356789999999999999
Q ss_pred chhhhhc-ccceeeecCeEEEEecCCCCCCChHHHH
Q 043686 143 KWDVVNQ-AYSWIEFRNKVHVFGTGDVSCPRSEGIF 177 (282)
Q Consensus 143 ~~~~A~~-~~~~~~~~~~~~~~i~~~~~~~~~~~a~ 177 (282)
.+.-|.. +...+...+....++.-|...|.+++.+
T Consensus 214 EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELI 249 (624)
T 3lvg_A 214 EFRLAQMCGLHIVVHADELEELINYYQDRGYFEELI 249 (624)
T ss_dssp TTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTST
T ss_pred HHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHH
Confidence 8887765 3333333344456677788888888866
No 240
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.50 E-value=4.6 Score=33.15 Aligned_cols=57 Identities=14% Similarity=0.078 Sum_probs=38.5
Q ss_pred HHHccCChHHHHHHHHh-cCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686 71 VLARAGLFDEARIFIQE-YHMER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS 127 (282)
Q Consensus 71 ~~~~~g~~~~A~~l~~~-m~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~ 127 (282)
..-+.|++++|.+.... .+-.| |...=..|+.-+|-.|+|++|.+-++-..+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 34566777777776655 33344 46666677777777778877777777777777743
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=76.95 E-value=16 Score=25.24 Aligned_cols=46 Identities=20% Similarity=0.367 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCChhHHHHHHH
Q 043686 90 MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC-ELKPLSAENYIMLSN 136 (282)
Q Consensus 90 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~p~~~~~~~~Li~ 136 (282)
..|+..+..+.+.+|-|.+++.-|.++|+-.+ ++.+.. .+|..++.
T Consensus 41 lVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~-~iY~~~lq 87 (109)
T 1v54_E 41 LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHK-EIYPYVIQ 87 (109)
T ss_dssp BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCT-THHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCch-hhHHHHHH
Confidence 56777777777777777777777777777776 454432 45655544
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.97 E-value=30 Score=34.53 Aligned_cols=57 Identities=11% Similarity=-0.182 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCh----hHHHHHHHHHHHcCchhhhhcccce
Q 043686 97 LRALLEGCRIHVQVKTGKRVIDQLCELK-PLSA----ENYIMLSNWYAAEAKWDVVNQAYSW 153 (282)
Q Consensus 97 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-p~~~----~~~~~Li~~y~~~g~~~~A~~~~~~ 153 (282)
|..++.-+.+.+..+.+.++-+...+.. +++. ..|..+.+.+...|++++|......
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 4556666667777777666666655432 2221 1456666777777777777664433
No 243
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=73.98 E-value=22 Score=25.45 Aligned_cols=81 Identities=9% Similarity=-0.040 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHH---HHHHhh---ccCCC-C-hhHHHHHHHHHHccCChHHHH
Q 043686 11 RELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEE---GWLCFN---RIRSP-K-VTHHALMVSVLARAGLFDEAR 82 (282)
Q Consensus 11 ~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~---a~~l~~---~g~~p-~-~~~~~~li~~~~~~g~~~~A~ 82 (282)
+..+.+-|.+... .|. |+..|--.+--++.++..... +..+++ ..-.| + ....-.|--++.|.|++++|.
T Consensus 17 l~~~~~~y~~e~~-~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKA-AGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHH-HSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhc-cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3455566665544 444 666666667778888887666 888888 33224 2 233446777899999999999
Q ss_pred HHHHhcC-CCCC
Q 043686 83 IFIQEYH-MERY 93 (282)
Q Consensus 83 ~l~~~m~-~~p~ 93 (282)
+.++.+- ++|+
T Consensus 95 ~~~~~lL~~eP~ 106 (126)
T 1nzn_A 95 KYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHHhCCC
Confidence 9999865 6775
No 244
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=73.49 E-value=6.3 Score=28.75 Aligned_cols=57 Identities=19% Similarity=0.290 Sum_probs=44.5
Q ss_pred HHHHHHHhc---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCChhHHHHHHHH
Q 043686 80 EARIFIQEY---HMERYPEVLRALLEGCRIHVQVKTGKRVIDQLC-ELKPLSAENYIMLSNW 137 (282)
Q Consensus 80 ~A~~l~~~m---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~p~~~~~~~~Li~~ 137 (282)
+..+-++.. -..|+..+..+-+.+|-+.+++--|.++|+-.+ ++.+.. .+|--++.-
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~-~iY~y~lqE 131 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHK-EIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCT-THHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCch-hhHHHHHHH
Confidence 444444443 278999999999999999999999999999998 666643 678766653
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=69.55 E-value=24 Score=25.46 Aligned_cols=72 Identities=15% Similarity=0.044 Sum_probs=49.2
Q ss_pred cCCCChhHHHHHHHHHHccCC---hHHHHHHHHhcC-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh
Q 043686 57 IRSPKVTHHALMVSVLARAGL---FDEARIFIQEYH-MERY--PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSA 128 (282)
Q Consensus 57 g~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~ 128 (282)
+-.|+..|--..-.++.+..+ ..++..++++.- ..|. ...+--|--|+.|.|++++|.+..+...+++|+|.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 344444444444445555554 456777776643 3452 45566677799999999999999999999999874
No 246
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=65.87 E-value=16 Score=25.07 Aligned_cols=48 Identities=19% Similarity=-0.052 Sum_probs=23.5
Q ss_pred HHHHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043686 70 SVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQL 120 (282)
Q Consensus 70 ~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 120 (282)
..+.+.|++++|..+.+... .||...|-+|-.. |.|.-+++..-+..+
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLA-YPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSC-CGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCC-CchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 33455555555555555554 5555555554332 334444444444333
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=62.40 E-value=17 Score=27.36 Aligned_cols=90 Identities=12% Similarity=-0.026 Sum_probs=46.3
Q ss_pred HHHHHHHccCChHHHHHHHHhcC----CCCC-------HHHHHHHHHHHHhcCChhHHHHHHHHHH---hcCCCC-----
Q 043686 67 LMVSVLARAGLFDEARIFIQEYH----MERY-------PEVLRALLEGCRIHVQVKTGKRVIDQLC---ELKPLS----- 127 (282)
Q Consensus 67 ~li~~~~~~g~~~~A~~l~~~m~----~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~p~~----- 127 (282)
.-+..+...|.++.|+-+.+.+. -.|+ ..+...+..++...|++.+|...|++.. +.-|.+
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 34455555566666655554421 2233 1244555566666666666666666654 111111
Q ss_pred -----------------hhHHHHHHHHHHHcCchhhhhcccceeee
Q 043686 128 -----------------AENYIMLSNWYAAEAKWDVVNQAYSWIEF 156 (282)
Q Consensus 128 -----------------~~~~~~Li~~y~~~g~~~~A~~~~~~~~~ 156 (282)
+..---+-.+|.+.++.++|....+.+|.
T Consensus 105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 11111255667777777777776655544
No 248
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.59 E-value=14 Score=32.45 Aligned_cols=60 Identities=10% Similarity=-0.049 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHhcC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043686 63 THHALMVSVLARAGLFDEARIFIQEYH---MERY--PEVLRALLEGCRIHVQVKTGKRVIDQLCE 122 (282)
Q Consensus 63 ~~~~~li~~~~~~g~~~~A~~l~~~m~---~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 122 (282)
.+...+.+.|.+.|+.++|.+.|.++. ..+. +..|-.+|..+...+++..|...+.+...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 366788999999999999999999986 2333 67888899999999999999999999874
No 249
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=61.35 E-value=41 Score=23.91 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=39.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCC--hhHHHHHHHHHH
Q 043686 64 HHALMVSVLARAGLFDEARIFIQEYHMERY---PEVLRALLEGCRIHVQ--VKTGKRVIDQLC 121 (282)
Q Consensus 64 ~~~~li~~~~~~g~~~~A~~l~~~m~~~p~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~ 121 (282)
..+.+++=|...|+.++|.+.++++. .|. .++...+..+.-+.+. .+....++..+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~-~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~ 70 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELE-VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLW 70 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT-CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC-CCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 35678888888899999999999887 443 4566667777776642 345666666665
No 250
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=61.23 E-value=45 Score=24.37 Aligned_cols=70 Identities=16% Similarity=0.071 Sum_probs=47.7
Q ss_pred CCChhHHHHHHHHHHccCC---hHHHHHHHHhcC-CCC-C-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh
Q 043686 59 SPKVTHHALMVSVLARAGL---FDEARIFIQEYH-MER-Y-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSA 128 (282)
Q Consensus 59 ~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~-~~p-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~ 128 (282)
.|+..+--..-.++.+..+ +.++..++++.- ..| + -...--|--|+.|.|++++|.+..+.+.+++|+|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 4555554445556666654 446666776643 344 3 33444566689999999999999999999999873
No 251
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=59.67 E-value=36 Score=25.04 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=40.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCC--hhHHHHHHHHHH
Q 043686 64 HHALMVSVLARAGLFDEARIFIQEYHMERY---PEVLRALLEGCRIHVQ--VKTGKRVIDQLC 121 (282)
Q Consensus 64 ~~~~li~~~~~~g~~~~A~~l~~~m~~~p~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~ 121 (282)
..+.+|+=|...|++++|.+.++++. .|. .++...+..++-+.+. .+.+..++..+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~-~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~ 72 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELE-VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLW 72 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT-CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC-CCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 45678888888999999999999987 453 5566677777776532 344666666665
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=55.72 E-value=48 Score=27.09 Aligned_cols=65 Identities=15% Similarity=0.193 Sum_probs=47.6
Q ss_pred HHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHHHHH
Q 043686 39 HACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY----PEVLRALLEG 103 (282)
Q Consensus 39 ~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~li~~ 103 (282)
....+.|.+++|.+... ..-.| |...-..|+..+|-.|+++.|.+-++... ..|+ +..|-.+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Confidence 45668899999999888 33444 67777899999999999999999887754 4555 3345544443
No 253
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=54.50 E-value=64 Score=23.99 Aligned_cols=91 Identities=7% Similarity=-0.082 Sum_probs=59.0
Q ss_pred CC-ChhHHHHHHHHHHccCCh------HHHHHHHHhcC--CCCCH--------HH--HHHHHHHHHhcCChhHHHHHHHH
Q 043686 59 SP-KVTHHALMVSVLARAGLF------DEARIFIQEYH--MERYP--------EV--LRALLEGCRIHVQVKTGKRVIDQ 119 (282)
Q Consensus 59 ~p-~~~~~~~li~~~~~~g~~------~~A~~l~~~m~--~~p~~--------~~--~~~li~~~~~~g~~~~A~~~~~~ 119 (282)
.| |..+|=..++..-+.|+. ++..++|++.. ++|+. .. .-++. ...+++++|.++|+.
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~---~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL---KAIQEPDDARDYFQM 85 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH---HHHHCGGGCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH---HHhcCHHHHHHHHHH
Confidence 44 466777777777777888 88888887743 44531 11 12222 233799999999999
Q ss_pred HHhcCCCChhHHHHHHHHHHHcCchhhhhcccc
Q 043686 120 LCELKPLSAENYIMLSNWYAAEAKWDVVNQAYS 152 (282)
Q Consensus 120 m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~ 152 (282)
+..++..-+..|......=.+.|++++|.++..
T Consensus 86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg 118 (161)
T 4h7y_A 86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQ 118 (161)
T ss_dssp HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 986644335666666666677788777766443
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=54.08 E-value=67 Score=24.11 Aligned_cols=97 Identities=14% Similarity=0.056 Sum_probs=58.2
Q ss_pred CCCCCCHHH--HHHHHHHHhcCCCHHHHHHHhh-----ccCCCCh-------hHHHHHHHHHHccCChHHHHHHHHhc-C
Q 043686 25 SSIEIDPLT--FAAVLHACSTAGMVEEGWLCFN-----RIRSPKV-------THHALMVSVLARAGLFDEARIFIQEY-H 89 (282)
Q Consensus 25 ~g~~p~~~t--y~~ll~a~~~~g~~~~a~~l~~-----~g~~p~~-------~~~~~li~~~~~~g~~~~A~~l~~~m-~ 89 (282)
.|+.|--.. +-.-+..+...|.++.|.-+-+ .+..|++ .++..+.+++...|++..|...|++. +
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 455554443 3334556777788888877777 2333332 35667778889999999999988872 1
Q ss_pred ----C--CCC--------------------HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 90 ----M--ERY--------------------PEVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 90 ----~--~p~--------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
+ .|+ +..---+-.+|.+.+++++|..+++.+.
T Consensus 92 ~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 1 111 1222336778999999999998877553
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=53.88 E-value=1.4e+02 Score=29.77 Aligned_cols=139 Identities=11% Similarity=0.028 Sum_probs=90.9
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh---ccCCCCh------------------
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN---RIRSPKV------------------ 62 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~------------------ 62 (282)
.+.+.|..+-|.++..-.. -|...-=.+-.++...|++++|.+.|. .|+.++.
T Consensus 821 ~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~ 894 (1139)
T 4fhn_B 821 KLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHH 894 (1139)
T ss_dssp HHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTS
T ss_pred HHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccc
Confidence 3455666666665544332 344332222336778999999999998 3332210
Q ss_pred -----hHHHHHHHHHHccCChHHHHHHHHhc----C-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhH
Q 043686 63 -----THHALMVSVLARAGLFDEARIFIQEY----H-MERY--PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAEN 130 (282)
Q Consensus 63 -----~~~~~li~~~~~~g~~~~A~~l~~~m----~-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~ 130 (282)
.=|.-++..+-+.|..+.|.++-... . -.++ ...|..+..++...|++++|...+-.+....- -...
T Consensus 895 ~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-r~~c 973 (1139)
T 4fhn_B 895 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-KKSC 973 (1139)
T ss_dssp CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-CHHH
T ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-HHHH
Confidence 12566778888888888888766542 1 1222 23689999999999999999999987764332 3466
Q ss_pred HHHHHHHHHHcCchhhhhc
Q 043686 131 YIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 131 ~~~Li~~y~~~g~~~~A~~ 149 (282)
...||...|+.|.+++=..
T Consensus 974 Lr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 974 LLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp HHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHhCCChhhhhC
Confidence 7788888888888776543
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.33 E-value=1.2e+02 Score=26.60 Aligned_cols=84 Identities=15% Similarity=0.112 Sum_probs=62.3
Q ss_pred HHHHHHHHccCChHHHHHHHHhcC---CCC--C---HHHHHHHHHHHHhcCChhHHHHHHHHHH----hcCC-CC--hhH
Q 043686 66 ALMVSVLARAGLFDEARIFIQEYH---MER--Y---PEVLRALLEGCRIHVQVKTGKRVIDQLC----ELKP-LS--AEN 130 (282)
Q Consensus 66 ~~li~~~~~~g~~~~A~~l~~~m~---~~p--~---~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~p-~~--~~~ 130 (282)
.-|.+.|-..|++.+|.+++.+++ ... . +..|.-.+.-|...+++.+|..++.++. ...| +. ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 456788888999999999998875 111 1 5677788888999999999999999875 2222 11 245
Q ss_pred HHHHHHHHHHcCchhhhhc
Q 043686 131 YIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 131 ~~~Li~~y~~~g~~~~A~~ 149 (282)
|...+..+...+++.+|.+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~ 239 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQ 239 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHH
Confidence 6677778888888887776
No 257
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=52.25 E-value=54 Score=22.49 Aligned_cols=47 Identities=26% Similarity=0.075 Sum_probs=21.5
Q ss_pred HHHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043686 71 VLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQL 120 (282)
Q Consensus 71 ~~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 120 (282)
.+.+.|++++|..+.+... .||...|-+|-. .|.|.-+++..-+..+
T Consensus 48 SLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP-WPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC-CGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCC-CchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3444555555555544444 555555544432 2334444444444333
No 258
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=49.97 E-value=13 Score=24.05 Aligned_cols=38 Identities=3% Similarity=0.017 Sum_probs=25.3
Q ss_pred HHHHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043686 83 IFIQEYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQL 120 (282)
Q Consensus 83 ~l~~~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 120 (282)
.++++++ +.|++.||+-+....-+.--..++..+.+++
T Consensus 24 ~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 24 QLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5677777 7788999986666555544445566666654
No 259
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=46.73 E-value=24 Score=27.20 Aligned_cols=86 Identities=12% Similarity=0.020 Sum_probs=57.1
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHH--HHHHHHHHhcCCCHHHHHHHhhccCCCChhH--HHHHHHHHHccCC
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLT--FAAVLHACSTAGMVEEGWLCFNRIRSPKVTH--HALMVSVLARAGL 77 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~t--y~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~--~~~li~~~~~~g~ 77 (282)
+...++.|+.+-...+++.+.+ .|..++... -.+.+...+..|+.+-...+++.|..|+... ..+.+...++.|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQ-GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHh-cCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence 3456778998888888887776 666554321 1234444556788888888887666665332 2245556677888
Q ss_pred hHHHHHHHHhc
Q 043686 78 FDEARIFIQEY 88 (282)
Q Consensus 78 ~~~A~~l~~~m 88 (282)
.+-+..+++.-
T Consensus 92 ~~~~~~Ll~~~ 102 (241)
T 1k1a_A 92 PTCLRALLDSA 102 (241)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHcC
Confidence 88888888764
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=45.82 E-value=1.4e+02 Score=25.24 Aligned_cols=112 Identities=9% Similarity=-0.022 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhh----------------------------ccCCCChhHHHHHHHHHHccCC-------
Q 043686 33 TFAAVLHACSTAGMVEEGWLCFN----------------------------RIRSPKVTHHALMVSVLARAGL------- 77 (282)
Q Consensus 33 ty~~ll~a~~~~g~~~~a~~l~~----------------------------~g~~p~~~~~~~li~~~~~~g~------- 77 (282)
+|-++.+-|.+.+++++|.+++- .++++|..+..-|+..+.....
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~ 116 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKR 116 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHH
Q ss_pred -hHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhh
Q 043686 78 -FDEARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVV 147 (282)
Q Consensus 78 -~~~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A 147 (282)
+++|.+.-.+-. -.-|......+-..|.+.+++.+|+.-| +.+.++ ++..|..++--+.+.+...++
T Consensus 117 fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~--ilg~~~-s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 117 FVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL--VLGTKE-SPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp HHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH--TTSCTT-HHHHHHHHHHHHHHTSCGGGH
T ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH--HhcCCc-hHHHHHHHHHHHHHhcCCccH
No 261
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.58 E-value=1.3e+02 Score=26.32 Aligned_cols=86 Identities=10% Similarity=0.016 Sum_probs=58.7
Q ss_pred hhhhhcCChHHHHHHHHHhHHh-CCCCCC---HHHHHHHHHHHhcCCCHHHHHHHhh--------ccCCCC--hhHHHHH
Q 043686 3 LGYSLHGQRELGLSLFSELEKK-SSIEID---PLTFAAVLHACSTAGMVEEGWLCFN--------RIRSPK--VTHHALM 68 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~-~g~~p~---~~ty~~ll~a~~~~g~~~~a~~l~~--------~g~~p~--~~~~~~l 68 (282)
..|-..|++.+|.+++.++..+ .|..+. ...|.--+..|...+++.+|..+.. ....|+ ...|..+
T Consensus 145 ~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~ 224 (445)
T 4b4t_P 145 EIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLL 224 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHH
Confidence 4567789999999999998652 233222 2356667777888888888887776 222333 2455677
Q ss_pred HHHHHccCChHHHHHHHHhc
Q 043686 69 VSVLARAGLFDEARIFIQEY 88 (282)
Q Consensus 69 i~~~~~~g~~~~A~~l~~~m 88 (282)
+..+...+++.+|.+.|.+.
T Consensus 225 ~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 225 VKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHH
Confidence 77777888888888877664
No 262
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=45.07 E-value=1.5e+02 Score=25.55 Aligned_cols=145 Identities=8% Similarity=-0.023 Sum_probs=93.9
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHH---HHHHHHHHhcC-CCHHHHHHHhh---ccCCCChhHH------HHHH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLT---FAAVLHACSTA-GMVEEGWLCFN---RIRSPKVTHH------ALMV 69 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~t---y~~ll~a~~~~-g~~~~a~~l~~---~g~~p~~~~~------~~li 69 (282)
.-|.+.|+.++..+++...+.-.+..|...| -..+|+.+... +..+.-.++.. .-..-...+| .-|+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~ 106 (394)
T 3txn_A 27 ELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLI 106 (394)
T ss_dssp HHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999987651233444443 55788888875 44444444443 0000111223 3588
Q ss_pred HHHHccCChHHHHHHHHhcC--C-C---CC--HHHHHHHHHHHHhcCChhHHHHHHHHHHh----cCCCChhHHHHHHH-
Q 043686 70 SVLARAGLFDEARIFIQEYH--M-E---RY--PEVLRALLEGCRIHVQVKTGKRVIDQLCE----LKPLSAENYIMLSN- 136 (282)
Q Consensus 70 ~~~~~~g~~~~A~~l~~~m~--~-~---p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~p~~~~~~~~Li~- 136 (282)
..|-..|++.+|.+++.++. + . +. +.+|-.-+..|...+++.++..++..... +.| ++..- .-++
T Consensus 107 ~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~-~p~i~-a~i~~ 184 (394)
T 3txn_A 107 ALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC-PPKVQ-GALDL 184 (394)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHH-HHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC-CHHHH-HHHHH
Confidence 99999999999999998864 1 1 21 56677888889999999999999999872 312 32222 2222
Q ss_pred ----HHH-HcCchhhhhc
Q 043686 137 ----WYA-AEAKWDVVNQ 149 (282)
Q Consensus 137 ----~y~-~~g~~~~A~~ 149 (282)
++. ..+++.+|..
T Consensus 185 ~~Gi~~l~~~rdyk~A~~ 202 (394)
T 3txn_A 185 QSGILHAADERDFKTAFS 202 (394)
T ss_dssp HHHHHHHHTTSCHHHHHH
T ss_pred HhhHHHHHhccCHHHHHH
Confidence 233 5677777766
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.34 E-value=1.2e+02 Score=26.40 Aligned_cols=82 Identities=7% Similarity=-0.120 Sum_probs=49.2
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCC--CHHHHHHHHHHHhcCCCHHHHHHHhh-------ccCCCChh----HHHHHHH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEI--DPLTFAAVLHACSTAGMVEEGWLCFN-------RIRSPKVT----HHALMVS 70 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p--~~~ty~~ll~a~~~~g~~~~a~~l~~-------~g~~p~~~----~~~~li~ 70 (282)
-|.+.|++++|.+.|.+++. .-..+ -...+-.++..+...+++..+..... .+-.|+.. .|..++
T Consensus 140 ~~~~~Gd~~~A~~~~~~~~~-~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~- 217 (429)
T 4b4t_R 140 YYAQIGDKDNAEKTLGKSLS-KAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIH- 217 (429)
T ss_dssp HHHHHCCCTTHHHHHHHHHH-HHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHG-
T ss_pred HHHHcCCHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHH-
Confidence 46778888888888888876 42222 23466667777777777777776666 33333321 222222
Q ss_pred HHHccCChHHHHHHHHhc
Q 043686 71 VLARAGLFDEARIFIQEY 88 (282)
Q Consensus 71 ~~~~~g~~~~A~~l~~~m 88 (282)
+...+++.+|-+.|-+.
T Consensus 218 -~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 218 -CLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp -GGGTSCHHHHHHHHHHH
T ss_pred -HHHhChHHHHHHHHHHH
Confidence 23456777777777653
No 264
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=43.51 E-value=77 Score=21.74 Aligned_cols=73 Identities=14% Similarity=0.046 Sum_probs=54.8
Q ss_pred ChHHHHHHHHHhHHhCCCCCCHHHHHHHHH--HHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHHHh
Q 043686 10 QRELGLSLFSELEKKSSIEIDPLTFAAVLH--ACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQE 87 (282)
Q Consensus 10 ~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~--a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 87 (282)
..++|..+-+-+.. .| + .-.-+||. .+.+.|++++|..+.+.-+.||...|-+|-. .|.|.-+++..-+.+
T Consensus 21 ~HqEA~tIAdwL~~-~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 21 CHEEALCIAEWLER-LG---Q-DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp CHHHHHHHHHHHHH-TT---C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 45788888888776 43 3 33334444 6789999999999999666999999988754 488999998888866
Q ss_pred cC
Q 043686 88 YH 89 (282)
Q Consensus 88 m~ 89 (282)
+.
T Consensus 94 la 95 (115)
T 2uwj_G 94 LG 95 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 265
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=42.70 E-value=1.1e+02 Score=26.52 Aligned_cols=87 Identities=10% Similarity=-0.063 Sum_probs=57.0
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCC-CCCC---HHHHHHHHHHHhcCCCHHHHHHHhh------ccCCCChhHHHH----
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSS-IEID---PLTFAAVLHACSTAGMVEEGWLCFN------RIRSPKVTHHAL---- 67 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g-~~p~---~~ty~~ll~a~~~~g~~~~a~~l~~------~g~~p~~~~~~~---- 67 (282)
..-|...|++.+|.+++.++.++.. +... ...|..-+..|...+++.+++..+. ..+.|++.+.+.
T Consensus 106 ~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~ 185 (394)
T 3txn_A 106 IALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQ 185 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHH
Confidence 4567889999999999999876211 1111 1356667778889999999998887 333333333221
Q ss_pred HHHHHH-ccCChHHHHHHHHhc
Q 043686 68 MVSVLA-RAGLFDEARIFIQEY 88 (282)
Q Consensus 68 li~~~~-~~g~~~~A~~l~~~m 88 (282)
-...+. ..+++.+|...|-+.
T Consensus 186 ~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 186 SGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHH
T ss_pred hhHHHHHhccCHHHHHHHHHHH
Confidence 122234 678899888887653
No 266
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=41.00 E-value=1.6e+02 Score=27.16 Aligned_cols=137 Identities=13% Similarity=-0.024 Sum_probs=89.3
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-ccCCC-ChhHHHHHHHHHHccCChHHHH
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-RIRSP-KVTHHALMVSVLARAGLFDEAR 82 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-~g~~p-~~~~~~~li~~~~~~g~~~~A~ 82 (282)
..+.|++..+..+-..+.. ..+. ....|..+...+... ..++....+. ..-.| ....-+-.+..+++.+++....
T Consensus 16 a~~~~~~~~~~~l~~~l~~-~pL~-~yl~y~~l~~~l~~~-~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l 92 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKD-YPLY-PYLEYRQITDDLMNQ-PAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLL 92 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTT-STTH-HHHHHHHHHHTGGGC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHhhcC-CCcH-HHHHHHHHHhCcccC-CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHH
Confidence 3567888888888777755 4453 334777766555432 4556666666 33333 2334456677888888988888
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhh
Q 043686 83 IFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDV 146 (282)
Q Consensus 83 ~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~ 146 (282)
+.+.. + ..+...-.....+....|+-.+|....+..--.....+.....|++.+.+.|.+..
T Consensus 93 ~~~~~-~-p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 93 AFSPE-K-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp HHCCS-C-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCH
T ss_pred HhccC-C-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCH
Confidence 86665 3 34555556677778888988878777777662222233678888888887776654
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=38.19 E-value=96 Score=21.31 Aligned_cols=73 Identities=11% Similarity=0.049 Sum_probs=55.1
Q ss_pred ChHHHHHHHHHhHHhCCCCCCHHHHHHHHH--HHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHHHh
Q 043686 10 QRELGLSLFSELEKKSSIEIDPLTFAAVLH--ACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQE 87 (282)
Q Consensus 10 ~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~--a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 87 (282)
..++|..+-+-+.. .| + .-.-+||. .+.+.|++++|..+.+.-+.||...|-+|-. .|.|.-+++..-+.+
T Consensus 22 ~HqEA~tIAdwL~~-~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 22 YHEEANCIAEWLHL-KG---E-EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp CHHHHHHHHHHHHH-TT---C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 45788888888776 43 3 33334444 6789999999999999666999999988754 478888998888866
Q ss_pred cC
Q 043686 88 YH 89 (282)
Q Consensus 88 m~ 89 (282)
+.
T Consensus 95 la 96 (116)
T 2p58_C 95 LA 96 (116)
T ss_dssp HT
T ss_pred HH
Confidence 65
No 268
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=38.01 E-value=32 Score=22.47 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=27.2
Q ss_pred ChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCC
Q 043686 10 QRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGM 46 (282)
Q Consensus 10 ~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~ 46 (282)
-.++|...|.+|..+.++.|+. ||...+......-+
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~~-tWe~~~~~i~~DpR 50 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAFS-TWEKELHKIVFDPR 50 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSSS-CHHHHHHHHHTCSG
T ss_pred CHHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHccCCc
Confidence 3578999999998867888875 78877776665443
No 269
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=36.95 E-value=1.8e+02 Score=24.14 Aligned_cols=85 Identities=11% Similarity=-0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhh----------------------------ccCCCChhHHHHHHHHHHccCChH-HHHH
Q 043686 33 TFAAVLHACSTAGMVEEGWLCFN----------------------------RIRSPKVTHHALMVSVLARAGLFD-EARI 83 (282)
Q Consensus 33 ty~~ll~a~~~~g~~~~a~~l~~----------------------------~g~~p~~~~~~~li~~~~~~g~~~-~A~~ 83 (282)
+|-++..-|.+.+++++|.+++. .+..+|..+..-|+..+.....-+ .=.+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~ 114 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKD 114 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHH
Q ss_pred HHHhcC---------CCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043686 84 FIQEYH---------MERYPEVLRALLEGCRIHVQVKTGKRVI 117 (282)
Q Consensus 84 l~~~m~---------~~p~~~~~~~li~~~~~~g~~~~A~~~~ 117 (282)
+++++. -.-|......+-..|.+.|++.+|+.-|
T Consensus 115 fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 115 VITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=35.80 E-value=1.5e+02 Score=22.92 Aligned_cols=102 Identities=7% Similarity=0.072 Sum_probs=61.2
Q ss_pred HHHHHHHHhcC-CCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHH--hcCCCChhHHHHHHHHHHHcCchhhhhcccc
Q 043686 79 DEARIFIQEYH-MERY---PEVLRALLEGCRIHVQVKTGKRVIDQLC--ELKPLSAENYIMLSNWYAAEAKWDVVNQAYS 152 (282)
Q Consensus 79 ~~A~~l~~~m~-~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~ 152 (282)
+.+.+.|...+ ..-| +..|-..+..+ ..+...++..+|..|. ++.-..+..|......|...|++.+|.+++.
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44455554444 3334 45565555554 2344668888888887 5665566778888888888888888877654
Q ss_pred eeeecCeEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCC
Q 043686 153 WIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSL 192 (282)
Q Consensus 153 ~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~ 192 (282)
.--.+ +..-.+...+....+..+|.+.++
T Consensus 140 ~GI~~-----------~A~P~~rL~~~~~~F~~R~~~~~~ 168 (202)
T 3esl_A 140 LGAEN-----------NCRPYNRLLRSLSNYEDRLREMNI 168 (202)
T ss_dssp HHHHT-----------TCBSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHc-----------CCccHHHHHHHHHHHHHHHHhcCC
Confidence 42111 011123333444567778887777
No 271
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=35.40 E-value=28 Score=21.18 Aligned_cols=33 Identities=9% Similarity=0.137 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhHHhCCCCCCHHHHHHHHHHH-hcC
Q 043686 11 RELGLSLFSELEKKSSIEIDPLTFAAVLHAC-STA 44 (282)
Q Consensus 11 ~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~-~~~ 44 (282)
.++|.+.|.+|.++.++.|+- ||.-.|..+ ++.
T Consensus 2 ~eEae~aF~~lL~~~~V~s~w-sweqamr~i~i~D 35 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTW-SFSRIISELGTRD 35 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSC-CHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHcCCCCCC-cHHHHHHHhccCC
Confidence 478999999998757787774 777777776 443
No 272
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=33.84 E-value=1.8e+02 Score=24.12 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=36.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCC--hhHHHHHHHHHH
Q 043686 65 HALMVSVLARAGLFDEARIFIQEYHMERY---PEVLRALLEGCRIHVQ--VKTGKRVIDQLC 121 (282)
Q Consensus 65 ~~~li~~~~~~g~~~~A~~l~~~m~~~p~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~ 121 (282)
.+.++.=|...|++++|.+.++++. .|. .+++.++..+.-+.++ .+...+++..+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~-~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~ 229 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELE-VPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLW 229 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC-CGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-CCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHH
Confidence 4567777777888888888888876 443 4556666666666532 344556666555
No 273
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=33.71 E-value=38 Score=21.43 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCC
Q 043686 10 QRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGM 46 (282)
Q Consensus 10 ~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~ 46 (282)
..++|...|.+|.++.++.|+. ||...+..+...-+
T Consensus 13 t~eea~~~F~~LL~e~~V~~~~-tWe~~~~~i~~DpR 48 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSNA-SWEQAMKMIINDPR 48 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTTC-CHHHHHHHHHTSGG
T ss_pred CHHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHccCcc
Confidence 4689999999998767887774 77777776665443
No 274
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=31.30 E-value=2.2e+02 Score=24.17 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=37.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCC--hhHHHHHHHHHH
Q 043686 64 HHALMVSVLARAGLFDEARIFIQEYHMERY---PEVLRALLEGCRIHVQ--VKTGKRVIDQLC 121 (282)
Q Consensus 64 ~~~~li~~~~~~g~~~~A~~l~~~m~~~p~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~ 121 (282)
..+.+|.=|...|++++|.+.++++. .|. .++..++..+.-+.++ .+...+++..+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~-~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~ 280 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELE-VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLW 280 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHC-CTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHcc-CCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 35677888888888888888888877 443 4556666666665432 334555555554
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=31.09 E-value=50 Score=24.39 Aligned_cols=38 Identities=13% Similarity=0.008 Sum_probs=24.4
Q ss_pred HHHHhh----ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHh
Q 043686 50 GWLCFN----RIRSPK-VTHHALMVSVLARAGLFDEARIFIQE 87 (282)
Q Consensus 50 a~~l~~----~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~ 87 (282)
+.++|. .|+--. ..-|.+.-..+-..|++.+|.++|+.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 126 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQR 126 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444 444443 45666777777777888888877765
No 276
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=30.54 E-value=17 Score=20.15 Aligned_cols=10 Identities=30% Similarity=0.966 Sum_probs=7.9
Q ss_pred cCCccCCCCC
Q 043686 272 EYGFCSCRDF 281 (282)
Q Consensus 272 ~~~~~~~~~~ 281 (282)
.+|.|+||-|
T Consensus 20 ~~~~C~CG~y 29 (42)
T 2l0z_A 20 SLGGCRCGKY 29 (42)
T ss_dssp TTSSBTTTTB
T ss_pred CCceeccccc
Confidence 3689999976
No 277
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.39 E-value=2e+02 Score=22.68 Aligned_cols=30 Identities=10% Similarity=-0.232 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 92 RYPEVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 92 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
++...-...++.+.+-|+-++|.++|=+..
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 344445555666666677777766666554
No 278
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=29.94 E-value=3.3e+02 Score=25.01 Aligned_cols=110 Identities=12% Similarity=0.031 Sum_probs=66.3
Q ss_pred ChHHHHHHHHHhHHhCCCCCCHHHHHHHHH----HHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHHHHH
Q 043686 10 QRELGLSLFSELEKKSSIEIDPLTFAAVLH----ACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDEARI 83 (282)
Q Consensus 10 ~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~----a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~ 83 (282)
+.+.|..+|....+ .. ..+......+-. .....+...++...+. ..-.++.....-.+-.--+.|+++.|.+
T Consensus 229 d~~~A~~~~~~~~~-~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQ-AQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHH-HT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHhhhh-cc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHHHHH
Confidence 77899999998875 33 223333333333 3334453445555555 1222232222223323336799999999
Q ss_pred HHHhcCCCC-C-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686 84 FIQEYHMER-Y-PEVLRALLEGCRIHVQVKTGKRVIDQLC 121 (282)
Q Consensus 84 l~~~m~~~p-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (282)
.|+.|+-.+ + ..-.--+-.++.+.|+.++|..+|+...
T Consensus 307 ~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 307 WLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999998222 2 3334445667888999999999999875
No 279
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=29.67 E-value=54 Score=19.74 Aligned_cols=11 Identities=0% Similarity=-0.257 Sum_probs=2.1
Q ss_pred HHhcCChhHHH
Q 043686 104 CRIHVQVKTGK 114 (282)
Q Consensus 104 ~~~~g~~~~A~ 114 (282)
+.+.|++++|+
T Consensus 50 LmNrG~Yq~Al 60 (61)
T 3ph0_C 50 LMNQGDYQRAL 60 (61)
T ss_dssp HHHC-------
T ss_pred HHccchHhHhh
Confidence 45555555553
No 280
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=29.54 E-value=10 Score=29.97 Aligned_cols=84 Identities=8% Similarity=0.010 Sum_probs=53.5
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCH-------HHHHHHHHHHhc--CCCHHHHHHHhhccCCCCh-----------
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDP-------LTFAAVLHACST--AGMVEEGWLCFNRIRSPKV----------- 62 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~-------~ty~~ll~a~~~--~g~~~~a~~l~~~g~~p~~----------- 62 (282)
...++.|+.+....+++.+.+ .|..++. ...+.|..|+.. .|..+-+..+++.|..++.
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~-~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 85 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRW-NSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD 85 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHH-HTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCS
T ss_pred HHHHHcCCHHHHHHHHHHHHH-cCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccccc
Confidence 456788999988888887777 7765543 344555555543 3888878888773332221
Q ss_pred --hHHHHHHHHHHccCChHHHHHHHHh
Q 043686 63 --THHALMVSVLARAGLFDEARIFIQE 87 (282)
Q Consensus 63 --~~~~~li~~~~~~g~~~~A~~l~~~ 87 (282)
....+-+...+..|+.+-+..+++.
T Consensus 86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 112 (256)
T 2etb_A 86 EFYQGHSALHIAIEKRSLQCVKLLVEN 112 (256)
T ss_dssp TTTTTCCHHHHHHHTTCHHHHHHHHHT
T ss_pred ccccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 1123445555677888888877776
No 281
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=29.19 E-value=46 Score=23.40 Aligned_cols=38 Identities=11% Similarity=-0.112 Sum_probs=17.9
Q ss_pred HHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh
Q 043686 17 LFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN 55 (282)
Q Consensus 17 lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~ 55 (282)
||+.+.+ ..+.|++..--.-|..+...++++.|..++-
T Consensus 48 LfdkLn~-~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~ 85 (118)
T 2yru_A 48 LREQWAG-GKLSIPVKKRMALLVQELLHHQWDAADDIHR 85 (118)
T ss_dssp HHHHHHH-TCSCHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhc-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444 4454444433333334444555555555554
No 282
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.63 E-value=4.1e+02 Score=25.75 Aligned_cols=105 Identities=4% Similarity=-0.212 Sum_probs=67.9
Q ss_pred HHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC--C-CCC--------------------
Q 043686 37 VLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH--M-ERY-------------------- 93 (282)
Q Consensus 37 ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~--~-~p~-------------------- 93 (282)
++..|...|..+-|.++.. -++.|...--.+-.+|-.+|+.++|.+.|++.. + .++
T Consensus 816 l~~~L~~~~~~~~a~eL~~-~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~ 894 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG-WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQN 894 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG-GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCS
T ss_pred HHHHHHHhcHHHHHHHHHh-hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccc
Confidence 6677777888888777666 222233222345566778999999999998753 1 111
Q ss_pred --HHHHHHHHHHHHhcCChhHHHHHHHHHHh-cCCCChh----HHHHHHHHHHHcC
Q 043686 94 --PEVLRALLEGCRIHVQVKTGKRVIDQLCE-LKPLSAE----NYIMLSNWYAAEA 142 (282)
Q Consensus 94 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~p~~~~----~~~~Li~~y~~~g 142 (282)
..=|..+++-+-+.+.++-+.++-+...+ ..+++.. .|+-+.++++-.|
T Consensus 895 ~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 895 LLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 11367777888888888888888887774 4454433 4556666665544
No 283
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=28.52 E-value=32 Score=24.37 Aligned_cols=113 Identities=12% Similarity=0.048 Sum_probs=63.4
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhH--HHHHHHHHHccCChHH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTH--HALMVSVLARAGLFDE 80 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~--~~~li~~~~~~g~~~~ 80 (282)
...++.|+.+.+..+++. ....--.+|..-.+ .+.. +..|..+-+..+++.|..++... -.+.+...++.|+.+-
T Consensus 7 ~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t-~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 83 (156)
T 1bd8_A 7 SGAAARGDVQEVRRLLHR-ELVHPDALNRFGKT-ALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDT 83 (156)
T ss_dssp HHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCC-HHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHhCCHHHHHHHHHh-hCcCccccCCCCCc-HHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHH
Confidence 345678888888888776 21011112323333 3444 77888888888888666655321 2244555566788887
Q ss_pred HHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043686 81 ARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQ 119 (282)
Q Consensus 81 A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 119 (282)
+.-+++.=. -.+|..-++.|.. -++.|+.+-+.-+++.
T Consensus 84 v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 84 LKVLVEHGADVNVPDGTGALPIHL-AVQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHHHHTTCCSCCCCTTSCCHHHH-HHHHTCHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCcCCCCCcHHHH-HHHhChHHHHHHHHhc
Confidence 777776422 1223333333333 3456676666655554
No 284
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.50 E-value=80 Score=21.04 Aligned_cols=38 Identities=18% Similarity=0.096 Sum_probs=22.6
Q ss_pred CChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 043686 76 GLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGK 114 (282)
Q Consensus 76 g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~ 114 (282)
...+.|.++++.++ ......|..+++++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~-~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLE-TRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHT-TSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHH-HcChHHHHHHHHHHHHcCcHHHHH
Confidence 35666666666666 444456666666666555554443
No 285
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=27.36 E-value=38 Score=22.65 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=23.4
Q ss_pred CChHHHHHHHHHHHHHHHhCCCccCCCccc
Q 043686 171 PRSEGIFWELQSLMKKMEGDSLRPKPDFSL 200 (282)
Q Consensus 171 ~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~ 200 (282)
|+..+.+..+++-.++++..|+.||..-+-
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~G 42 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILFG 42 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEEc
Confidence 445566677788889999999999987553
No 286
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=27.32 E-value=1.6e+02 Score=27.33 Aligned_cols=16 Identities=13% Similarity=0.063 Sum_probs=9.6
Q ss_pred HhcCChhHHHHHHHHH
Q 043686 105 RIHVQVKTGKRVIDQL 120 (282)
Q Consensus 105 ~~~g~~~~A~~~~~~m 120 (282)
...|+++.|++.+++.
T Consensus 549 ~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 549 YFNKQWQETLSQMELL 564 (661)
T ss_dssp HHTTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhC
Confidence 5556666666665554
No 287
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=27.27 E-value=72 Score=25.53 Aligned_cols=139 Identities=8% Similarity=-0.050 Sum_probs=66.7
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhH--HHHHHHHHHccCChHHH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTH--HALMVSVLARAGLFDEA 81 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~--~~~li~~~~~~g~~~~A 81 (282)
..++.|+.+-+..+++. |..|+...-.+.+...+..|..+-+..+++.|..|+... ..+-+...+..|+.+-+
T Consensus 37 ~A~~~g~~~~v~~Ll~~-----g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v 111 (285)
T 3kea_A 37 YAIADNNVRLVCTLLNA-----GALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTV 111 (285)
T ss_dssp HHHHTTCHHHHHHHHHT-----TGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHhC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence 34556666555444443 333332222334555566678877777777665554321 12344455667777777
Q ss_pred HHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686 82 RIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ 149 (282)
Q Consensus 82 ~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~ 149 (282)
.-+++.=. -.+|..-|.+.+..-+..|+.+-+..+++. +..+.+...-.+.+..-+..|..+-+.-
T Consensus 112 ~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~g~t~L~~A~~~g~~~~v~~ 179 (285)
T 3kea_A 112 KLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE--IPSTFDLAILLSCIHITIKNGHVDMMIL 179 (285)
T ss_dssp HHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT--SCTTCCCSTHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCccccccCCccHHHHHHHcChHHHHHH
Confidence 77776521 112222333444445556666544443332 1112121122333444445566555444
No 288
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=25.84 E-value=2.2e+02 Score=21.72 Aligned_cols=121 Identities=11% Similarity=0.037 Sum_probs=70.4
Q ss_pred hhhhcCChHHHHHHHHHhHHhCCCCC----------------CH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhH
Q 043686 4 GYSLHGQRELGLSLFSELEKKSSIEI----------------DP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTH 64 (282)
Q Consensus 4 ~~~~~g~~~~A~~lf~~m~~~~g~~p----------------~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~ 64 (282)
+|-+..++..|+.-+..+.. ..+.. |. .-|+-+-..|...|+.++|...|. .|..|=-.+
T Consensus 71 Cy~klKdYkkA~~~le~il~-~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILE-GKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHT-TCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-cccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 45677889999999999885 44442 33 345556667888999999999988 333332111
Q ss_pred HHHHHHH------------H--HccC----ChHHHHH--------HHHh-cCCCCCHHHHHHHH--HHHHhcCChhHHHH
Q 043686 65 HALMVSV------------L--ARAG----LFDEARI--------FIQE-YHMERYPEVLRALL--EGCRIHVQVKTGKR 115 (282)
Q Consensus 65 ~~~li~~------------~--~~~g----~~~~A~~--------l~~~-m~~~p~~~~~~~li--~~~~~~g~~~~A~~ 115 (282)
...||-- . .|.| .+.+..+ ..++ |...|..-+|-.-- ..|...|..++..+
T Consensus 150 vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~ 229 (242)
T 3kae_A 150 VENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKA 229 (242)
T ss_dssp HHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHH
Confidence 1111100 0 0000 0111111 2222 33667766664333 33677888888888
Q ss_pred HHHHHHhcCC
Q 043686 116 VIDQLCELKP 125 (282)
Q Consensus 116 ~~~~m~~~~p 125 (282)
+|...++.+|
T Consensus 230 lf~~lR~kDP 239 (242)
T 3kae_A 230 CFELVRRKDP 239 (242)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHhcCC
Confidence 8888887777
No 289
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=25.54 E-value=78 Score=22.79 Aligned_cols=66 Identities=8% Similarity=-0.045 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHhcCC---CHHHHHHHhh--ccCCCC--hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC
Q 043686 28 EIDPLTFAAVLHACSTAG---MVEEGWLCFN--RIRSPK--VTHHALMVSVLARAGLFDEARIFIQEYH-MERY 93 (282)
Q Consensus 28 ~p~~~ty~~ll~a~~~~g---~~~~a~~l~~--~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~ 93 (282)
.|+.-|=-.+--++.++. +..++..+++ ..-.|. ....--|--|+.|.|+.++|.+..+.+- +.|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 344443333333445544 4567888887 223352 3445567788999999999999999854 7887
No 290
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.42 E-value=2.3e+02 Score=25.48 Aligned_cols=66 Identities=17% Similarity=0.097 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHhcCCC----CC--HHHHH-HHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686 62 VTHHALMVSVLARAGLFDEARIFIQEYHME----RY--PEVLR-ALLEGCRIHVQVKTGKRVIDQLCELKPLS 127 (282)
Q Consensus 62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----p~--~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~p~~ 127 (282)
...+|.|+..|-..+.++.|.++..+.++. +| ...|. .+-.-+.-.+++.+|.+.+.......|.+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 457888889999999999999999997621 22 23443 34455777889999999988887655533
No 291
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.00 E-value=42 Score=24.89 Aligned_cols=81 Identities=6% Similarity=-0.047 Sum_probs=36.8
Q ss_pred hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhH--HHHHHHHHHccCChHHHH
Q 043686 5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTH--HALMVSVLARAGLFDEAR 82 (282)
Q Consensus 5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~--~~~li~~~~~~g~~~~A~ 82 (282)
.+..|+.+....++.+-.. .--.+|...++.|. ..+..|+.+-+..+++.|..|+... ..+-+...+..|+.+-+.
T Consensus 12 A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~ 89 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTY-QVDEVDTEGNTPLN-IAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILA 89 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTC-CTTCCCTTSCCHHH-HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHhccHHHHHHHHHcCCC-CCCCCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 3455666665555543221 00111222222332 2334466666666666554444221 123334445556666666
Q ss_pred HHHHh
Q 043686 83 IFIQE 87 (282)
Q Consensus 83 ~l~~~ 87 (282)
.+++.
T Consensus 90 ~Ll~~ 94 (201)
T 3hra_A 90 YMLKH 94 (201)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66644
No 292
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=23.56 E-value=2.3e+02 Score=23.97 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=15.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHhcC
Q 043686 65 HALMVSVLARAGLFDEARIFIQEYH 89 (282)
Q Consensus 65 ~~~li~~~~~~g~~~~A~~l~~~m~ 89 (282)
-.++|.=|...|++++|.+.++++.
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 3455666666666666666666665
No 293
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=23.44 E-value=73 Score=24.13 Aligned_cols=113 Identities=10% Similarity=-0.057 Sum_probs=60.1
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhH--HHHHHHHHHccCChH
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTH--HALMVSVLARAGLFD 79 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~--~~~li~~~~~~g~~~ 79 (282)
+...++.|+.+....++..-.. .--.+|...++.|.. .+..|+.+-...+++.|..++... -.+.+...++.|+.+
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~-A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 87 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKS-LATRTDQDSRTALHW-ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDE 87 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGG-GGGCCCTTSCCHHHH-HHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHhchh-hhhcCCCCCCCHHHH-HHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHH
Confidence 3455778888888888776433 212233333344433 345577777777777665554321 223445556677877
Q ss_pred HHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043686 80 EARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVI 117 (282)
Q Consensus 80 ~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~ 117 (282)
-+..+++.-. -.+|..-++.|. ..++.|+.+-+..++
T Consensus 88 ~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~~~~~Ll 126 (231)
T 3aji_A 88 IVKALLVKGAHVNAVNQNGCTPLH-YAASKNRHEIAVMLL 126 (231)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHH-HHHHcCCHHHHHHHH
Confidence 7776666522 122222233333 334556666544444
No 294
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=23.36 E-value=1.7e+02 Score=20.54 Aligned_cols=41 Identities=20% Similarity=0.227 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHhh-ccCCC---ChhHHHHHHHHHHcc
Q 043686 34 FAAVLHACSTAGMVEEGWLCFN-RIRSP---KVTHHALMVSVLARA 75 (282)
Q Consensus 34 y~~ll~a~~~~g~~~~a~~l~~-~g~~p---~~~~~~~li~~~~~~ 75 (282)
.+.+|.=|...|+.++|.+.++ .+. | ..+++.++..++=+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~-p~f~~e~V~~~i~~alE~~ 54 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIVMVLEST 54 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC-GGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC-CccHHHHHHHHHHHHHcCC
Confidence 4556666666777777777776 221 2 133444555555544
No 295
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=23.24 E-value=60 Score=23.35 Aligned_cols=83 Identities=13% Similarity=0.159 Sum_probs=43.7
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhH--HHHHHHHHHccCChHH
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTH--HALMVSVLARAGLFDE 80 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~--~~~li~~~~~~g~~~~ 80 (282)
...++.|+.+....+++.-.. .--.+|...++.|..| +..|+.+-...+++.|..++... ..+.+...++.|+.+-
T Consensus 7 ~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 84 (172)
T 3v30_A 7 HQLAAQGELDQLKEHLRKGDN-LVNKPDERGFTPLIWA-SAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDI 84 (172)
T ss_dssp HHHHHTTCHHHHHHHHTTCSG-GGGCCCTTSCCHHHHH-HHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHcCcc-cccCCCCCCCCHHHHH-HHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHH
Confidence 345667777766666655321 1111233333333333 45577777777777555554321 1234455566777776
Q ss_pred HHHHHHh
Q 043686 81 ARIFIQE 87 (282)
Q Consensus 81 A~~l~~~ 87 (282)
+..+++.
T Consensus 85 v~~Ll~~ 91 (172)
T 3v30_A 85 VGLLLER 91 (172)
T ss_dssp HHHHHTT
T ss_pred HHHHHHc
Confidence 6666654
No 296
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.98 E-value=1.9e+02 Score=24.08 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=11.0
Q ss_pred HHHHHHHccCChHHHHHHHHhcC
Q 043686 67 LMVSVLARAGLFDEARIFIQEYH 89 (282)
Q Consensus 67 ~li~~~~~~g~~~~A~~l~~~m~ 89 (282)
.++.=|...|++++|.+.++++.
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC
Confidence 34444444455555555554443
No 297
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.27 E-value=18 Score=28.46 Aligned_cols=85 Identities=8% Similarity=-0.002 Sum_probs=53.8
Q ss_pred hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHH-------HHHHHHHHh--cCCCHHHHHHHhhccCCCCh----------
Q 043686 2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLT-------FAAVLHACS--TAGMVEEGWLCFNRIRSPKV---------- 62 (282)
Q Consensus 2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~t-------y~~ll~a~~--~~g~~~~a~~l~~~g~~p~~---------- 62 (282)
+...++.|+.+....+++.+.+ .|..++... .+.|..|.. +.|..+-+..+++.|..|+.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLT-HKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHH-HTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHhCCHHHHHHHHHHHHh-cCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 3456788999998888888777 776666443 355555543 56888888887773322111
Q ss_pred ---hHHHHHHHHHHccCChHHHHHHHHh
Q 043686 63 ---THHALMVSVLARAGLFDEARIFIQE 87 (282)
Q Consensus 63 ---~~~~~li~~~~~~g~~~~A~~l~~~ 87 (282)
....+.+..-+..|+.+-+.-+++.
T Consensus 88 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 115 (260)
T 3jxi_A 88 DVYYRGQTALHIAIERRCKHYVELLVEK 115 (260)
T ss_dssp CSSEESBCHHHHHHHTTCHHHHHHHHHT
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 0222344555667888877777765
No 298
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=20.71 E-value=1e+02 Score=24.53 Aligned_cols=109 Identities=11% Similarity=-0.078 Sum_probs=59.3
Q ss_pred hhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHH
Q 043686 6 SLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFI 85 (282)
Q Consensus 6 ~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 85 (282)
.+..+.++..+++..-.- -.+|..-.+.|. ..+..|+.+-...+++.|..++...-.+.+...++.|+.+-+..++
T Consensus 7 i~~~~~~~v~~lL~~~~~---~~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 82 (285)
T 3kea_A 7 INTWKSKQLKSFLSSKDT---FKADVHGHSASY-YAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILL 82 (285)
T ss_dssp GGGCCHHHHHHHHHSTTT---TCCCTTSCCHHH-HHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHH
T ss_pred HHhcCHHHHHHHHHhCCC---CccCCCCCCHHH-HHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 345566666666654211 123333333333 3445688888888877666665444445666667778888777777
Q ss_pred HhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043686 86 QEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQ 119 (282)
Q Consensus 86 ~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 119 (282)
+.=. -.+|..-++.|.. -+..|+.+-+..+++.
T Consensus 83 ~~ga~~~~~d~~g~t~L~~-A~~~g~~~~v~~Ll~~ 117 (285)
T 3kea_A 83 FSGLDDSQFDDKGNTALYY-AVDSGNMQTVKLFVKK 117 (285)
T ss_dssp HTTCCTTCCCTTSCCHHHH-HHHTTCHHHHHHHHHH
T ss_pred HCCCCCCCcCCCCCcHHHH-HHHcCCHHHHHHHHhc
Confidence 6522 1223333333333 3456676665555554
No 299
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=20.30 E-value=5.4 Score=36.03 Aligned_cols=134 Identities=13% Similarity=0.137 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChh
Q 043686 33 TFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH-MERYPEVLRALLEGCRIHVQVK 111 (282)
Q Consensus 33 ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~~~~~~~li~~~~~~g~~~ 111 (282)
.|+-|-.|..+.|++.+|.+-|-..- |...|.-+|....+.|.+++-.+.+.... ...+..+=+.||-+|++.++..
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA~--Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~ 133 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKAD--DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLA 133 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCCS--CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSS
T ss_pred HHHHHHHHHHccCchHHHHHHHHhCC--ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHH
Confidence 46666666666666666665554211 34456667777777777777776665543 2223334456777777777765
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecCeEEEEecCCCCCCChHHHH
Q 043686 112 TGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIF 177 (282)
Q Consensus 112 ~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~ 177 (282)
+-++.+. .| |+.--....+=+...|.++.|.-.++.+..-.. +-+.+.+.+++.+|.
T Consensus 134 elEefl~-----~~-N~A~iq~VGDrcf~e~lYeAAKilys~isN~ak---LAstLV~L~~yq~AV 190 (624)
T 3lvg_A 134 ELEEFIN-----GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGR---LASTLVHLGEYQAAV 190 (624)
T ss_dssp TTTSTTS-----CC-SSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTT---TSSSSSSCSGGGSST
T ss_pred HHHHHHc-----CC-CcccHHHHHHHHHHccCHHHHHHHHHhCccHHH---HHHHHHHHHHHHHHH
Confidence 4333321 34 334445566666677777777767766544332 223334445554443
No 300
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=20.19 E-value=30 Score=20.63 Aligned_cols=43 Identities=7% Similarity=0.033 Sum_probs=30.6
Q ss_pred hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCC
Q 043686 3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGM 46 (282)
Q Consensus 3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~ 46 (282)
..|.+..-.++-..+..+=+. +|-.+..++|+++.+.+...|.
T Consensus 4 q~Yvs~~v~~~I~~ive~r~q-eGA~~~dvs~Ssv~smLleLGL 46 (55)
T 1dp3_A 4 QAYVSDEIVYKINKIVERRRA-EGAKSTDVSFSSISTMLLELGL 46 (55)
T ss_dssp SSCCCCTHHHHHHHHHHHHHH-HTCCSTTCCHHHHHHHHHHHTT
T ss_pred eeehhhHHHHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHhH
Confidence 345555556666667777667 8888888888888887777663
Done!