BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043688
         (292 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DOO|A Chain A, Crystal Structure Of Arabidopsis Thaliana Fatty-Acid
           Binding Protein At3g63170 (Atfap1)
 pdb|4DOO|B Chain B, Crystal Structure Of Arabidopsis Thaliana Fatty-Acid
           Binding Protein At3g63170 (Atfap1)
          Length = 205

 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 113/191 (59%), Gaps = 5/191 (2%)

Query: 98  VEPKTGVSFPVKLNDGKQLNCVGLRKKSMLGL-GIKIYGFGIYADNEKLKELLRSKIGKA 156
           VEPKTG SFP  + D ++L  VGLRKKS+LGL  I +Y FG+YAD + +K+L+  K    
Sbjct: 6   VEPKTGFSFPASIGDSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGDKYANL 65

Query: 157 LA---KATKEMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKND 213
            A   +  K     ++++D  MT+R+ IV+  L +  V+  F E +G  +KK  GG  ND
Sbjct: 66  PASEIRGNKSFMDDLMEADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKF-GGSDND 124

Query: 214 ELANKVMGHASEDIKLTSGSVIEISRLPGYTLQARVMDQVVSNVESELLCKAYIHMYLGD 273
           EL         ++ K+   S I++++ PG+ L   +    V +V+S LLC++ + +Y+G+
Sbjct: 125 ELLQSFTSLFKDEYKIPRNSTIDLTKDPGHVLSVAIEGNHVGSVKSHLLCRSILDLYIGE 184

Query: 274 DAFDKDAKEKL 284
           + FDK+A+E  
Sbjct: 185 EPFDKNAREDF 195


>pdb|4DOL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Fatty-Acid
           Binding Protein At1g53520 (Atfap3)
          Length = 217

 Score = 34.7 bits (78), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 88/213 (41%), Gaps = 17/213 (7%)

Query: 88  EEAKEDIAVEVEPKTGVSFPVKLNDGKQLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKE 147
           E+  E+ A  V+ K  V+ P   +    L   G R+K    +G+K+Y  G Y  NE +  
Sbjct: 11  EDYAEETATSVKFKRSVTLP-GCSSPLSLLGTGFREKKFAIIGVKVYAAGYYV-NESILS 68

Query: 148 LLRSKIGKALAKATKE--MYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKK 205
            L +  G++  +  ++  ++ ++  + A  +++IV+V  ++         DE +   IK 
Sbjct: 69  GLSAWTGRSADEIQRDSSLFVSIFQAQAEKSLQIVLV-RDVDGKTFWDALDEAISPRIKS 127

Query: 206 LTGGKKNDELANKVMGHASEDIKLTSGSVIEISRLPGYTLQARVMD-----QVVSNVESE 260
                  D  A        ++  L  GSVI ++ +    +   V        V + +ES 
Sbjct: 128 ---PSSEDTTALSTFCCIFQNRPLNKGSVILLTWINTSNMLVSVSSGGLPTNVDATIESG 184

Query: 261 LLCKAYIHMYLGDDAFDKDAKE----KLGMSLL 289
            +  A   ++ GD       K     +L M+L+
Sbjct: 185 NVTSALFDVFFGDSPVSPTLKSSVANQLAMTLV 217


>pdb|3NDY|A Chain A, The Structure Of The Catalytic And Carbohydrate Binding
           Domain Of Endoglucanase D From Clostridium Cellulovorans
 pdb|3NDY|B Chain B, The Structure Of The Catalytic And Carbohydrate Binding
           Domain Of Endoglucanase D From Clostridium Cellulovorans
 pdb|3NDY|C Chain C, The Structure Of The Catalytic And Carbohydrate Binding
           Domain Of Endoglucanase D From Clostridium Cellulovorans
 pdb|3NDY|D Chain D, The Structure Of The Catalytic And Carbohydrate Binding
           Domain Of Endoglucanase D From Clostridium Cellulovorans
 pdb|3NDZ|A Chain A, The Structure Of The Catalytic And Carbohydrate Binding
           Domain Of Endoglucanase D From Clostridium Cellulovorans
           Bound To Cellotriose
 pdb|3NDZ|B Chain B, The Structure Of The Catalytic And Carbohydrate Binding
           Domain Of Endoglucanase D From Clostridium Cellulovorans
           Bound To Cellotriose
 pdb|3NDZ|C Chain C, The Structure Of The Catalytic And Carbohydrate Binding
           Domain Of Endoglucanase D From Clostridium Cellulovorans
           Bound To Cellotriose
 pdb|3NDZ|D Chain D, The Structure Of The Catalytic And Carbohydrate Binding
           Domain Of Endoglucanase D From Clostridium Cellulovorans
           Bound To Cellotriose
          Length = 345

 Score = 30.4 bits (67), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 199 LGASIKKLTGGKKNDELANKVMGHASEDIKLTSGS----VIEISRLPGYTLQARVMDQVV 254
           +GAS++   G  +N E+ N+    A   I+ T G+     I +  L    +   + D V+
Sbjct: 153 VGASLQWTGGSYENREVVNRYNLTAVNAIRATGGNNATRYIMVPTLAASAMSTTINDLVI 212

Query: 255 SNVESELLCKAYIHMY 270
            N +S+++    +HMY
Sbjct: 213 PNNDSKVIVS--LHMY 226


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.129    0.340 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,634,296
Number of Sequences: 62578
Number of extensions: 309170
Number of successful extensions: 720
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 711
Number of HSP's gapped (non-prelim): 19
length of query: 292
length of database: 14,973,337
effective HSP length: 98
effective length of query: 194
effective length of database: 8,840,693
effective search space: 1715094442
effective search space used: 1715094442
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)