BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043688
(292 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VZZ4|AB6C_ARATH ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6
PE=2 SV=3
Length = 1466
Score = 35.8 bits (81), Expect = 0.36, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 60 RTKVAEAEELSDERVQE--DKEKTGNEVRKEEAKEDIAVEVEPKTGVSFPVKLNDGKQLN 117
R+ + EE +D+++ E D + G+EVRK+E K D V + G ++ V +QL
Sbjct: 1311 RSNLDPLEEYTDDQIWEALDNCQLGDEVRKKELKLDSPVS---ENGQNWSV---GQRQLV 1364
Query: 118 CVG---LRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAKATKEMYQTVIDSD 172
C+G L++ +L L DN ++E LR +VIDSD
Sbjct: 1365 CLGRVLLKRSKLLVLDEATASIDTATDN-LIQETLRHHFADCTVITIAHRISSVIDSD 1421
>sp|Q9LK64|AB3C_ARATH ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3
PE=1 SV=1
Length = 1514
Score = 35.8 bits (81), Expect = 0.43, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 18/131 (13%)
Query: 60 RTKVAEAEELSDERVQE--DKEKTGNEVRKEEAKEDIAVEVEPKTGVSFPVKLNDGKQLN 117
R+ + EE +D+++ E DK + G+EVRK+E K D +V + G ++ + +QL
Sbjct: 1361 RSNLDPLEEYTDDQIWEALDKCQLGDEVRKKEQKLDSSVS---ENGDNWSM---GQRQLV 1414
Query: 118 CVG---LRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAKATKEMYQTVIDSDAG 174
C+G L++ +L L DN +++ LR +VIDSD
Sbjct: 1415 CLGRVLLKRSKILVLDEATASVDTATDN-LIQKTLREHFSDCTVITIAHRISSVIDSD-- 1471
Query: 175 MTVRIVIVFSN 185
+V++ SN
Sbjct: 1472 ----MVLLLSN 1478
>sp|B4EWA3|TYPH_PROMH Thymidine phosphorylase OS=Proteus mirabilis (strain HI4320)
GN=deoA PE=3 SV=1
Length = 440
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 20/102 (19%)
Query: 133 IYGFGIYADNEKLKELLR----SKIGK--ALAKATKEMYQTVIDSDAGMTVRIVIVFSNL 186
I GF I+ D+EK ++++R + IG+ +LA A K Y T D TV + + +
Sbjct: 130 IPGFDIFPDDEKFRDIIRHVGVAIIGQTNSLAPADKRFYAT---RDITATVDSIPL---I 183
Query: 187 TMSMVKKNFDEGLGASIKKLTGG--------KKNDELANKVM 220
T S++ K EGL A + + G +K++ELA ++
Sbjct: 184 TASILGKKLAEGLDALVMDVKVGSGAFMPTYQKSEELAESIV 225
>sp|Q9LK62|AB7C_ARATH ABC transporter C family member 7 OS=Arabidopsis thaliana GN=ABCC7
PE=2 SV=1
Length = 1493
Score = 33.9 bits (76), Expect = 1.6, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 60 RTKVAEAEELSDERVQE--DKEKTGNEVRKEEAKEDIAVEVEPKTGVSFPVKLNDGKQLN 117
R+ + EE +D+++ E DK + G+E+RK+E K D V + G ++ V +QL
Sbjct: 1333 RSNLDPLEEYADDQIWEALDKCQLGDEIRKKELKLDSPVS---ENGQNWSV---GQRQLV 1386
Query: 118 CVG--LRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAKATKEMYQTVIDSD 172
C+G L K+S + + + A + ++E LR +VIDSD
Sbjct: 1387 CLGRVLLKRSKVLILDEATASVDTATDTLIQETLRQHFSGCTVITIAHRISSVIDSD 1443
>sp|P57159|ARLY_BUCAI Argininosuccinate lyase OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=argH PE=3 SV=1
Length = 459
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 19/115 (16%)
Query: 189 SMVKKNFDEGLGASIKKL-TGGKKNDELANKVMGHASEDIKLTSGSVIEISR-------- 239
S +++ + +G KKL TG +ND++ + + I L ++IE+ +
Sbjct: 86 SWIEEKLIQKIGILGKKLHTGRSRNDQITTDLKLWCRKKIHLLLENIIELQKTFILSAES 145
Query: 240 -----LPGYTLQARVMDQVVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLL 289
+PGYT R S C AY+ M+ D + KD ++L +S L
Sbjct: 146 NHNIIMPGYTHLQRAQPITFS-----YWCLAYVEMFRRDFSRLKDVLKRLNVSPL 195
>sp|A1RTX9|SYL_PYRIL Leucine--tRNA ligase OS=Pyrobaculum islandicum (strain DSM 4184 /
JCM 9189) GN=leuS PE=3 SV=1
Length = 945
Score = 33.1 bits (74), Expect = 2.6, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 98 VEPKTGVSFPVKLNDGKQLNCVGLRKKSMLGL--GIKIYGFGIYADNEKLKEL-LRSKIG 154
V+P+ G + + + V LR + L IK+ G+G Y E ++ + ++S+
Sbjct: 303 VDPRVGTGVVMSVPAHAPYDYVALRDLGIEKLIPLIKVEGYGDYPAKEVVERMGIKSQTD 362
Query: 155 KALAKATKEMYQT-----VIDSDAGMTVRIVIVFSNLTMSMVKKNF 195
AL +ATKE+Y T V+ D +T RI I SM++ F
Sbjct: 363 PALEEATKEVYSTEYTRGVMRED--VTERIGIHLQEPARSMLRAVF 406
>sp|Q7RX99|ATG1_NEUCR Serine/threonine-protein kinase atg-1 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=atg-1 PE=3 SV=1
Length = 932
Score = 32.7 bits (73), Expect = 3.1, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 15 ALVLQKATAIGEVAKENV-GCE----NGTKVAE---DQNAIAELAKEKMNCENRTKVAEA 66
A+ + +A AI E+A E++ GCE ++ E DQ+ L K K++ ++ + A
Sbjct: 842 AIEMSRAAAINEIANEDLPGCEISYITAIRMLEAVLDQDD-DHLPKRKVSGASKEEKTGA 900
Query: 67 EELSDERVQEDKEKTGN 83
ELSDE EDK+ N
Sbjct: 901 NELSDEMNNEDKQVVQN 917
>sp|Q8BM75|ARI5B_MOUSE AT-rich interactive domain-containing protein 5B OS=Mus musculus
GN=Arid5b PE=1 SV=3
Length = 1188
Score = 32.3 bits (72), Expect = 4.8, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 35 ENGTKVAEDQNAIAELAKEKMNCENRTKVAEAEELSDERVQEDKEKTGNEVRKEEAKEDI 94
EN TKV+ ++ E+AK K EN K + E+S E Q +E+T N E
Sbjct: 434 ENKTKVSGNKRIKQEMAKNKKEKENTPKPQDTSEVSSE--QRKEEETLNHKSAPEPLPAP 491
Query: 95 AVEVEPK----TGVSFPVKLNDGKQLN 117
V+ +P+ G PV D ++ N
Sbjct: 492 EVKGKPEGHKDLGARAPVSRADPEKAN 518
>sp|Q9PLJ7|SYS_CHLMU Serine--tRNA ligase OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=serS PE=3 SV=1
Length = 428
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 6 VENVTAKAEALVLQKATAIGEVAKENVGCENGTKVAEDQNAIAE--LAKEKMNCENRTKV 63
V + A +E+L+ ++ G++ K V E+ T + + NAIA+ +A EK E +
Sbjct: 37 VRQLKADSESLLARRKALSGQIHKAKVANEDATPLIQGVNAIADQLVAFEKTLQEQEALL 96
Query: 64 ----AEAEELSDERVQEDKEKTGNEVRKEEAKEDIAVEVEPKTGVSFPVKLN 111
A DE V +K+GN++ K E PK V KL
Sbjct: 97 LDLMARLPNYPDEDVPVSPDKSGNKIIKSHG-EIPTFTFPPKHHVQLNEKLQ 147
>sp|C5DFS5|AIM18_LACTC Altered inheritance of mitochondria protein 18, mitochondrial
OS=Lachancea thermotolerans (strain ATCC 56472 / CBS
6340 / NRRL Y-8284) GN=AIM18 PE=3 SV=1
Length = 305
Score = 31.6 bits (70), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%)
Query: 84 EVRKEEAKEDIAVEVEPKTGVSFPVKLNDGKQLNCVGLRKKSMLGLGIKIYGFGIYADNE 143
+ E+ ++ V P T V P + + +G +S+ LG K+Y GIY NE
Sbjct: 68 PIENSESSVEVDKSVSPFTVVLSPPETLLTTKYTLLGFGPRSVTFLGFKVYALGIYVANE 127
Query: 144 KLK 146
L
Sbjct: 128 DLP 130
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,450,970
Number of Sequences: 539616
Number of extensions: 4088830
Number of successful extensions: 17576
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 207
Number of HSP's that attempted gapping in prelim test: 16893
Number of HSP's gapped (non-prelim): 749
length of query: 292
length of database: 191,569,459
effective HSP length: 116
effective length of query: 176
effective length of database: 128,974,003
effective search space: 22699424528
effective search space used: 22699424528
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)