Query 043688
Match_columns 292
No_of_seqs 110 out of 280
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 07:22:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03174 Chalcone-flavanone is 100.0 2E-47 4.3E-52 356.0 24.3 203 89-292 70-276 (278)
2 PLN02311 chalcone isomerase 100.0 4E-45 8.6E-50 339.4 23.8 196 91-292 62-270 (271)
3 PLN03175 hypothetical protein; 100.0 1.2E-44 2.6E-49 348.8 23.7 212 80-292 191-412 (415)
4 PF02431 Chalcone: Chalcone-fl 100.0 2.5E-40 5.3E-45 294.1 18.5 182 106-291 1-199 (199)
5 PLN02804 chalcone isomerase 100.0 1.4E-38 3.1E-43 285.1 21.5 187 102-292 7-206 (206)
6 PLN02559 chalcone--flavonone i 100.0 1.1E-36 2.4E-41 275.0 20.4 188 102-292 10-212 (230)
7 PF01052 SpoA: Surface present 68.7 8.5 0.00018 28.8 4.0 28 228-255 28-55 (77)
8 PRK06789 flagellar motor switc 67.7 9.2 0.0002 29.6 4.0 29 228-256 27-55 (74)
9 TIGR02480 fliN flagellar motor 65.9 9.6 0.00021 29.0 3.8 28 228-255 28-55 (77)
10 COG1886 FliN Flagellar motor s 58.1 13 0.00027 31.7 3.5 28 229-256 92-119 (136)
11 PRK06033 hypothetical protein; 54.5 21 0.00045 27.9 3.9 28 228-255 27-54 (83)
12 PRK05698 fliN flagellar motor 51.4 22 0.00047 31.2 4.0 28 228-255 99-126 (155)
13 PRK08983 fliN flagellar motor 50.0 24 0.00052 29.9 3.9 27 228-254 71-97 (127)
14 PRK07963 fliN flagellar motor 46.6 29 0.00063 29.8 4.0 27 228-254 80-106 (137)
15 PRK08433 flagellar motor switc 45.3 33 0.00072 28.4 4.0 27 228-254 52-78 (111)
16 PRK08916 flagellar motor switc 42.4 35 0.00076 28.5 3.7 28 228-255 65-92 (116)
17 TIGR03406 FeS_long_SufT probab 38.5 87 0.0019 27.8 5.8 63 227-291 18-85 (174)
18 PRK13690 hypothetical protein; 36.7 41 0.00088 30.3 3.4 41 226-271 20-60 (184)
19 PRK06788 flagellar motor switc 36.3 55 0.0012 27.5 4.0 27 228-254 54-80 (119)
20 PRK08035 type III secretion sy 31.0 59 0.0013 31.8 3.8 29 228-256 271-299 (323)
21 TIGR02551 SpaO_YscQ type III s 30.8 59 0.0013 30.8 3.8 29 228-256 253-281 (298)
22 TIGR01440 conserved hypothetic 29.7 55 0.0012 29.2 3.1 40 227-271 14-53 (172)
23 PRK06933 type III secretion sy 25.8 78 0.0017 30.7 3.6 29 228-256 257-285 (308)
24 PF10850 DUF2653: Protein of u 24.0 3.9E+02 0.0084 21.6 6.8 67 212-279 7-79 (91)
25 PF08265 YL1_C: YL1 nuclear pr 22.7 48 0.001 21.3 1.0 18 92-109 7-24 (30)
26 PRK08119 flagellar motor switc 22.4 1.1E+02 0.0024 30.1 4.0 27 228-254 326-352 (382)
27 PRK08158 type III secretion sy 21.8 97 0.0021 30.1 3.4 29 228-256 250-278 (303)
28 PRK06666 fliM flagellar motor 21.6 1.2E+02 0.0025 29.1 4.0 27 228-254 278-304 (337)
29 COG4475 Uncharacterized protei 21.2 1.2E+02 0.0025 27.1 3.4 48 218-270 10-57 (180)
30 TIGR01397 fliM_switch flagella 20.9 1.2E+02 0.0027 28.6 4.0 27 228-254 273-299 (320)
31 PF04014 Antitoxin-MazE: Antid 20.5 1.8E+02 0.0039 19.7 3.7 21 228-248 20-40 (47)
32 PF07653 SH3_2: Variant SH3 do 20.3 1.7E+02 0.0036 20.2 3.6 34 226-260 15-50 (55)
33 PRK05264 transcriptional repre 20.3 92 0.002 25.3 2.4 29 257-285 53-82 (105)
34 PF04023 FeoA: FeoA domain; I 20.3 2.9E+02 0.0063 19.9 5.1 27 229-255 33-61 (74)
35 PRK05933 type III secretion sy 20.2 1.3E+02 0.0028 29.8 3.9 29 228-256 326-355 (372)
36 KOG3381 Uncharacterized conser 20.0 1.2E+02 0.0025 26.8 3.2 26 104-129 82-109 (161)
No 1
>PLN03174 Chalcone-flavanone isomerase-related; Provisional
Probab=100.00 E-value=2e-47 Score=356.02 Aligned_cols=203 Identities=41% Similarity=0.724 Sum_probs=189.5
Q ss_pred ccccCCCeeeccCCCcccCcccCCCCceeeeeeeeEEEeee-eeEEEEEEEeecchhHHHHHhhhhcccchh---chHHH
Q 043688 89 EAKEDIAVEVEPKTGVSFPVKLNDGKQLNCVGLRKKSMLGL-GIKIYGFGIYADNEKLKELLRSKIGKALAK---ATKEM 164 (292)
Q Consensus 89 ~a~~~~~~vvEp~TGV~FP~~l~~g~~LnGaGvR~K~I~~l-~vKVYA~GLYl~~~sl~~~L~~k~~~~~~~---~~~~f 164 (292)
=|+++++.+|||+|||.||+.++....|.|+|+|.|+|.++ +||||++|||+++..++++|+.+|++++.. ++.+|
T Consensus 70 ~a~~~~~~~vEp~tGv~FP~~l~~~~~LLGaGvR~k~i~glk~IKvYAiGlYl~~~~v~~~L~~k~kgks~~El~~s~~f 149 (278)
T PLN03174 70 LADPSPPSVVESKTGVSFPAEIGDSRRLLGVGLRKKSILGLKNIDVYAFGVYADDDDLKKLLGEKYGKLSASELKGNKEF 149 (278)
T ss_pred eccCCCCceeccCCCCcCCCcccCCCcceeeeeeeEEEeccceEEEEEEEEEechhHhHHHhhhhhcCCChhhhhcCHHH
Confidence 46899999999999999999998766677999999999886 799999999999999999999999998864 57899
Q ss_pred HHHHhcCCCcceEEEEEeeCccchhHHHHHHHHHHHhhhhhccCCCccHHHHHHHHhhcccCCcCCCCCEEEEEEeCCCe
Q 043688 165 YQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKNDELANKVMGHASEDIKLTSGSVIEISRLPGYT 244 (292)
Q Consensus 165 ~~~Ll~~d~~~~iRLviv~r~v~~~~l~daf~esl~~rl~~~~~~~d~~e~l~~f~~~F~~~~~l~KGd~I~f~~~p~g~ 244 (292)
|++|+++|++|++||+++++.++.++++++|++++++||+++.+. +.++.|++|.++|+++.+++||++|+|+|.|+++
T Consensus 150 ~~dil~~~~ek~iRL~iiy~~v~~~~v~~A~~esv~~rl~~~~~~-e~~e~IekF~~~F~~~~~l~kGdvI~~~~~Pg~g 228 (278)
T PLN03174 150 IDDLMEADIKMTVRLQIVYGKLSIRSVRSAFEESVGSRLQKFGGS-DNKELLQSFTSLFKDEYKIPKGSVIDLSREPGHV 228 (278)
T ss_pred HHHHHcCCCceEEEEEEEeccccHHHHHHHHHHHHHHhhhccCCc-chHHHHHHHHHHHhccccCCCCCEEEEEEcCCCe
Confidence 999999999999999999988999999999999999999988754 3666899999999988889999999999999999
Q ss_pred EEEEECCEEeeEECCHhHHHHHHHHhcCCCCCCHHHHHHHHHhhhhcC
Q 043688 245 LQARVMDQVVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF 292 (292)
Q Consensus 245 L~V~~nGk~~G~I~s~~fa~ALfdiyLGd~PVSp~lK~s~aeglasl~ 292 (292)
|++++||+..|+|+++.||+|||++|||++||||++|++++++|++||
T Consensus 229 l~vsi~Gk~~g~Ie~~~f~~ALf~iyLGd~PVsp~lK~sll~~la~ll 276 (278)
T PLN03174 229 LRTTIDGKEVGSIQSKLLCRSILDLYIGEDPFDKNAKEDIEENLASLL 276 (278)
T ss_pred EEEEECCEEeeEECCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999986
No 2
>PLN02311 chalcone isomerase
Probab=100.00 E-value=4e-45 Score=339.39 Aligned_cols=196 Identities=19% Similarity=0.296 Sum_probs=176.1
Q ss_pred ccCCCeeeccCCCcccCcccCC-C--C--ceeeeeeeeEEEeeeeeEEEEEEEeecchhHHHHHhhhhcccchh---chH
Q 043688 91 KEDIAVEVEPKTGVSFPVKLND-G--K--QLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAK---ATK 162 (292)
Q Consensus 91 ~~~~~~vvEp~TGV~FP~~l~~-g--~--~LnGaGvR~K~I~~l~vKVYA~GLYl~~~sl~~~L~~k~~~~~~~---~~~ 162 (292)
.++...++||+|||+||+.++. + + +|||+|+|.|+|.|++||||++|||++++.+++ |+ +|++.++. ++.
T Consensus 62 ~~~~~~~~ep~TgV~Fp~~v~~~~~s~~L~LnGaGvR~K~I~~~~vKVYA~GLYL~~~~~~~-L~-kwkgk~a~eL~~~~ 139 (271)
T PLN02311 62 VGSAEYAEETATSVKFQRSLTLPGCSSPLSLLGTGYREKVFAIIGVKVYAAGLYVNPSILSG-LS-AWKGRSADEIQRDS 139 (271)
T ss_pred cCcccceecCCcCCcCCccccCCCCCCceeEeeeEEeeEEEeeeeEEEEEEEEEechhhhhh-Hh-hhcCCCHHHHhcch
Confidence 4778899999999999999983 3 2 999999999999999999999999999987755 66 89998763 678
Q ss_pred HHHHHHhcCCCcceEEEEEeeCccchhHHHHHHHHHHHhhhhhccCCCccHHHHHHHHhhcccCCcCCCCCEEEEEEeCC
Q 043688 163 EMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKNDELANKVMGHASEDIKLTSGSVIEISRLPG 242 (292)
Q Consensus 163 ~f~~~Ll~~d~~~~iRLviv~r~v~~~~l~daf~esl~~rl~~~~~~~d~~e~l~~f~~~F~~~~~l~KGd~I~f~~~p~ 242 (292)
+||++|+++|.+|++||+++ |+++.++++++|++++++|++... . ++.++|++|.++|++ ..+++||+|+|+|.|+
T Consensus 140 ~ff~dIi~a~~eK~irI~~i-R~v~g~~~~~A~~eg~~~rlk~~~-~-~~~~aLekF~~~F~~-~~l~kGd~I~~~~~p~ 215 (271)
T PLN02311 140 SLFSSIFQAPAEKSLQIVLV-RDVDGKTFWDALDEAISPRIKAPS-P-DDTSALSTFRSIFQN-RSLNKGTVIFLTWINP 215 (271)
T ss_pred HHHHHHhcCCcceEEEEEEE-ecCCHHHHHHHHHHHHHHHHhccc-c-chHHHHHHHHHHhcC-CCCCCCCEEEEEEeCC
Confidence 99999999999999999997 579999999999999999997543 2 367889999999986 5899999999999999
Q ss_pred CeEEEEEC--C---EEeeEECCHhHHHHHHHHhcCCCCCCHHHHHHHHHhhhhcC
Q 043688 243 YTLQARVM--D---QVVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF 292 (292)
Q Consensus 243 g~L~V~~n--G---k~~G~I~s~~fa~ALfdiyLGd~PVSp~lK~s~aeglasl~ 292 (292)
++++|.++ | +..|+|++++||+|||++||||+||||++|+++++||++||
T Consensus 216 ~~~~v~~s~~g~~~~~~g~Ies~~f~~ALf~i~LGd~PVs~~lK~sla~~la~ll 270 (271)
T PLN02311 216 SKMLVCISSEGLPSSVDATIESGNVTSALFDVFFGDSPVSPSLKASVANGLATTL 270 (271)
T ss_pred CceEEEEecCCcccceeEEECCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh
Confidence 88888874 4 56899999999999999999999999999999999999986
No 3
>PLN03175 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=348.80 Aligned_cols=212 Identities=25% Similarity=0.452 Sum_probs=190.7
Q ss_pred hccCCccccccccCCCeeeccCCCcccCcccC-C-CC----ceeeeeeeeEEEee-eeeEEEEEEEeecchhHHHHHhhh
Q 043688 80 KTGNEVRKEEAKEDIAVEVEPKTGVSFPVKLN-D-GK----QLNCVGLRKKSMLG-LGIKIYGFGIYADNEKLKELLRSK 152 (292)
Q Consensus 80 ~~~~~~~~~~a~~~~~~vvEp~TGV~FP~~l~-~-g~----~LnGaGvR~K~I~~-l~vKVYA~GLYl~~~sl~~~L~~k 152 (292)
|.|+..-+-....-...+|||+|||+||..++ . ++ .|.|+|+|.+.|.+ ++|||||+|+|+++.+++.+|+.|
T Consensus 191 ~~~~~~~~~~~~~~~~~~vEPkTgv~FP~~l~~~p~s~~sl~L~G~GvR~~eI~~~k~IKfyAiGVYle~~~v~~~L~~K 270 (415)
T PLN03175 191 HSGCSGLSFPDLNWTRDAVEPRTGIEFPMLLDENNSSLTSEVLVGTGSRTMKIIRIKSLKVYAFGFYVHPNSVCEKLGPK 270 (415)
T ss_pred CcCCCccCcCcccccccccccCCCCcCCccccCCCCCCCceeeeecccceeEEEeeceeEEEEEEEEeccchHHHHHhhh
Confidence 44444444444456679999999999999996 2 32 79999999999985 589999999999998888999999
Q ss_pred hcccchh---chHHHHHHHhcCCCcceEEEEEeeCccchhHHHHHHHHHHHhhhhhccCCCccHHHHHHHHhhcccCCcC
Q 043688 153 IGKALAK---ATKEMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKNDELANKVMGHASEDIKL 229 (292)
Q Consensus 153 ~~~~~~~---~~~~f~~~Ll~~d~~~~iRLviv~r~v~~~~l~daf~esl~~rl~~~~~~~d~~e~l~~f~~~F~~~~~l 229 (292)
|+++++. ++.+||++|+++|++|+|||++++++++.+++++||++++++||++..++. +.++|++|.++|+++.++
T Consensus 271 wkGKsa~EL~~s~eFf~DIItap~~m~IRLVii~~gI~~sk~~~Afees~g~RLkkt~gda-e~eAIeKF~s~F~~di~f 349 (415)
T PLN03175 271 YASVPASELKKCPDFYEDLLREDIVMTVRLVVNYNGLKINTVRDAFEKSLRNRLQKMNPNT-DYNCLKTFGSFFTEDIPI 349 (415)
T ss_pred hCCCcHHHHccCHHHHHHHHcCCccEEEEEEEecCCccHHHHHHHHHHHHHHHHhccCCch-HHHHHHHHHHHhhccccc
Confidence 9999975 788999999999999999999998889999999999999999999887653 666799999999878889
Q ss_pred CCCCEEEEEEeCCCeEEEEECCEEeeEECCHhHHHHHHHHhcCCCCCCHHHHHHHHHhhhhcC
Q 043688 230 TSGSVIEISRLPGYTLQARVMDQVVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF 292 (292)
Q Consensus 230 ~KGd~I~f~~~p~g~L~V~~nGk~~G~I~s~~fa~ALfdiyLGd~PVSp~lK~s~aeglasl~ 292 (292)
|||++|+|+|.|+++|+++++|+..|+|+|+.||+|||++||||+||||+||+++|++|++||
T Consensus 350 pkGssI~Ft~sP~ggLtisInG~~vgvIEnk~L~eALfdiyLGd~PVSPslKeslA~~La~Ll 412 (415)
T PLN03175 350 PAGTKIDFRRTSDGQLITEIGGNQIGAVRSKDLCRAFFDMYIGDVPVSEQTKEEIGQNVAGII 412 (415)
T ss_pred CCCCEEEEEEcCCCceEEEECCeeeeEeccHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986
No 4
>PF02431 Chalcone: Chalcone-flavanone isomerase; InterPro: IPR003466 Chalcone isomerase (5.5.1.6 from EC) also known as chalcone-flavanone isomerase, is a plant enzyme responsible for the isomerisation of chalcone to naringenin a key step in the biosynthesis of flavonoids. The Petunia hybrida (Petunia) genome contains two genes coding for very similar enzymes, ChiA and ChiB, but only the first seems to encode a functional chalcone isomerase. Chalcone isomerase has a core 2-layer alpha/beta structure consisting of beta(3)-alpha(2)-beta-alpha(2)-beta(3) []. This entry represents a subgroup of Chalcone isomerase.; GO: 0016872 intramolecular lyase activity, 0042398 cellular modified amino acid biosynthetic process; PDB: 1JX0_B 1JEP_A 1EYP_B 1JX1_B 1EYQ_B 1FM8_A 1FM7_A 4DOL_A 4DOI_A 4DOK_B ....
Probab=100.00 E-value=2.5e-40 Score=294.14 Aligned_cols=182 Identities=24% Similarity=0.388 Sum_probs=152.7
Q ss_pred cCcccC-C---C-CceeeeeeeeEEEeeeeeEEEEEEEeecchhHHHHHhhhhcccc----hhchHHHHHHHhcCCCcce
Q 043688 106 FPVKLN-D---G-KQLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKAL----AKATKEMYQTVIDSDAGMT 176 (292)
Q Consensus 106 FP~~l~-~---g-~~LnGaGvR~K~I~~l~vKVYA~GLYl~~~sl~~~L~~k~~~~~----~~~~~~f~~~Ll~~d~~~~ 176 (292)
||..++ + . .+|+|+|+|+++|. +||||++|||+++++++.++.. |.+.. ..++.+||++|++++++++
T Consensus 1 FP~~i~~p~~~~~l~L~G~GvR~~~~~--~ikVYavG~Yv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~k~ 77 (199)
T PF02431_consen 1 FPKKITSPTSSEELSLLGAGVRTVSFL--NIKVYAVGLYVDDSDAKKLLKK-WKGKSASDDLEKSEDFFDDLLDSPVEKA 77 (199)
T ss_dssp EESEEE-TTTSSEEEEEEEEEEEEEET--EEEEEEEEEEEECCHHHHHHHH-HTTT-HHHHHHT-HHHHHHHHHSSS-EE
T ss_pred CCCcccCCCCCCCeEEEEEEEeeEEEE--EEEEEEEEEEEChhHhhhHHHh-hhcccCcccccccHHHHHHHhcCCccEE
Confidence 666665 1 1 29999999999985 7999999999999988886554 44443 2478899999999999999
Q ss_pred EEEEEeeCccchhHHHHHHHHHHHhhhhhccC-CCccHHHHHHHHhhcccCCcCCCCCEEEEEEeCCCeEEEEEC-----
Q 043688 177 VRIVIVFSNLTMSMVKKNFDEGLGASIKKLTG-GKKNDELANKVMGHASEDIKLTSGSVIEISRLPGYTLQARVM----- 250 (292)
Q Consensus 177 iRLviv~r~v~~~~l~daf~esl~~rl~~~~~-~~d~~e~l~~f~~~F~~~~~l~KGd~I~f~~~p~g~L~V~~n----- 250 (292)
+||+++| +++.+||+|+|.+++.+|++.... ..++++.|++|+++|+..++++||++|+|+|.|+++|.+.++
T Consensus 78 iri~~~R-~~~~~~l~d~~~~~i~~r~~~~~~~~~~~~~~l~~f~~~F~~~g~~~kG~~i~l~~~~~g~l~v~~~~~~~~ 156 (199)
T PF02431_consen 78 IRIVPVR-NVDGKHLRDAFIESIRPRLKAAGTEEEALEEALDEFKSLFKSKGSVPKGDVITLTWSPDGSLTVSYNGQGKI 156 (199)
T ss_dssp EEEEESS-SEEHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHTTB-EE-TT-EEEEEEETTTEEEEEEESSSS-
T ss_pred EEEEEEe-cCCHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHhcccccccCCCEEEEEECCCCcEEEEEecCCCC
Confidence 9999996 599999999999999999987652 234788999999999776689999999999999999999998
Q ss_pred -CEEeeEECCHhHHHHHHHHhc-CCCCCCHHHHHHHHHhhhhc
Q 043688 251 -DQVVSNVESELLCKAYIHMYL-GDDAFDKDAKEKLGMSLLSL 291 (292)
Q Consensus 251 -Gk~~G~I~s~~fa~ALfdiyL-Gd~PVSp~lK~s~aeglasl 291 (292)
|+..|+|+++.||+|||++|| |++||||++|+++++||++|
T Consensus 157 ~~~~~g~I~~~~~~~al~~~yL~G~~pvs~~~k~s~~~~l~~l 199 (199)
T PF02431_consen 157 PGKELGTIKSPRFARALFDIYLSGDKPVSPSLKKSVAEGLASL 199 (199)
T ss_dssp -SSECEEEE-HHHHHHHHHHHH-STT-S-HHHHHHHHHHHHHH
T ss_pred CccceeEEcCHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhhcC
Confidence 899999999999999999999 99999999999999999986
No 5
>PLN02804 chalcone isomerase
Probab=100.00 E-value=1.4e-38 Score=285.13 Aligned_cols=187 Identities=16% Similarity=0.232 Sum_probs=167.2
Q ss_pred CCcccCcccCCC-C--ceeeeeeeeEEEeeeeeEEEEEEEeecchhHHHHHhhhhcccchh---chHHHHHHHhcCCCcc
Q 043688 102 TGVSFPVKLNDG-K--QLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAK---ATKEMYQTVIDSDAGM 175 (292)
Q Consensus 102 TGV~FP~~l~~g-~--~LnGaGvR~K~I~~l~vKVYA~GLYl~~~sl~~~L~~k~~~~~~~---~~~~f~~~Ll~~d~~~ 175 (292)
.|++||..++.. + .|.|+|+|.+.|.|++|||||+|+|+++ +++.+| .+|+++++. ++.+||++|+++|++|
T Consensus 7 ~~v~FP~~i~~ss~~l~L~G~G~R~~~I~~~~iK~yAiGvYle~-~~~~~L-~kwkgk~a~EL~~~~~Ff~dlv~~p~ek 84 (206)
T PLN02804 7 EDIPFPPQITTSSKPLSLLGHGITDIEIHFLQIKFTAIGVYLEP-SVKGHL-QSWKGKPGSELAEDDDFFQALIQAPVEK 84 (206)
T ss_pred cCcCCCceeecCCCcceEEeecccceEEEeEEEEEEEEEEEecH-HHHHHH-HHhcCCCHHHHhcCHHHHHHHHcCChhh
Confidence 489999999843 3 9999999999999999999999999999 577778 589998863 6889999999999999
Q ss_pred eEEEEEeeCccchhHHHHHHHHHHHhhhhhccCCC-ccHHHHHHHHhhcccCCcCCCCCEEEEEEeC-CCeEEEEE--CC
Q 043688 176 TVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGK-KNDELANKVMGHASEDIKLTSGSVIEISRLP-GYTLQARV--MD 251 (292)
Q Consensus 176 ~iRLviv~r~v~~~~l~daf~esl~~rl~~~~~~~-d~~e~l~~f~~~F~~~~~l~KGd~I~f~~~p-~g~L~V~~--nG 251 (292)
.+||++++ +++..+++++|++++++|++..+..+ ++.++|++|.++|++. ++|||++|+|+|+| +|.|.|.+ +|
T Consensus 85 ~~Ri~~i~-~l~g~qy~~~~ee~~~~rlk~~~~y~d~e~~aL~kf~~~Fk~~-~fp~Gs~I~ft~~~~~g~l~Isfs~dg 162 (206)
T PLN02804 85 LIRIVVIK-EIKGSQYGVQLESSVRDRLAEDDKYEEEEEEALEKVVEFFQSK-YFKKNSIITYHFPATSGIVEISFSTEG 162 (206)
T ss_pred EEEEEEEe-cCcCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhCCC-cCCCCCEEEEEecCCCCeEEEEEecCC
Confidence 99999996 68888999999999999999988654 3688999999999765 89999999999998 78887766 56
Q ss_pred EEe--eEECCHhHHHHHHHHhc-CCCCCCHHHHHHHHHhhhhcC
Q 043688 252 QVV--SNVESELLCKAYIHMYL-GDDAFDKDAKEKLGMSLLSLF 292 (292)
Q Consensus 252 k~~--G~I~s~~fa~ALfdiyL-Gd~PVSp~lK~s~aeglasl~ 292 (292)
... ++|+|+.+|+|||++|| |++||||++|+++|++|+.++
T Consensus 163 ~e~~~~~Ienk~l~~avl~~yi~G~~~VSp~~k~slA~~la~~~ 206 (206)
T PLN02804 163 KEESKLTVENANVVEMIQKWYLGGENGVSPSTISSVADSIAAEL 206 (206)
T ss_pred cccceeEEecHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhC
Confidence 554 56999999999999999 999999999999999999885
No 6
>PLN02559 chalcone--flavonone isomerase
Probab=100.00 E-value=1.1e-36 Score=275.05 Aligned_cols=188 Identities=23% Similarity=0.312 Sum_probs=169.6
Q ss_pred CCcccCcccC-CCC----ceeeeeeeeEEEeeeeeEEEEEEEeecchhHHHHHhhhhcccchh---chHHHHHHHhcCCC
Q 043688 102 TGVSFPVKLN-DGK----QLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAK---ATKEMYQTVIDSDA 173 (292)
Q Consensus 102 TGV~FP~~l~-~g~----~LnGaGvR~K~I~~l~vKVYA~GLYl~~~sl~~~L~~k~~~~~~~---~~~~f~~~Ll~~d~ 173 (292)
.||+||..++ +|. .|.|+|+|.+.|.+++||+||+|+||++.++ ..|+.+|++++.. ++.+||++|+.+|+
T Consensus 10 e~i~FP~~v~~p~s~~~l~L~GaG~Rg~eI~~~~vKftAiGvYle~~av-~~L~~KWKGKsa~EL~~~~~Ff~div~~p~ 88 (230)
T PLN02559 10 EGVTFPPSVKPPGSSNPLFLGGAGVRGLEIQGKFIKFTAIGVYLEGNAV-PSLAKKWKGKTAEELADSVAFFRDVVTGDF 88 (230)
T ss_pred cceecCCcccCCCCCCceEEEeccccceEEeeEEEEEEEEEEEechhHH-HHHHHhhCCcCHHHHhcCHHHHHHHHcCcc
Confidence 4899999997 332 9999999999999999999999999999877 4588999999863 78899999999999
Q ss_pred cceEEEEEeeCccchhHHHHHHHHHHHhhhhhccCCC-ccHHHHHHHHhhcccCCcCCCCCEEEEEEeCCCeEEEEE--C
Q 043688 174 GMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGK-KNDELANKVMGHASEDIKLTSGSVIEISRLPGYTLQARV--M 250 (292)
Q Consensus 174 ~~~iRLviv~r~v~~~~l~daf~esl~~rl~~~~~~~-d~~e~l~~f~~~F~~~~~l~KGd~I~f~~~p~g~L~V~~--n 250 (292)
++.+|++++. +++..++.+.+.+...+|++..+... .+.++|++|.++|++. .||||+.|+|+|+|++.|.|++ +
T Consensus 89 EK~~rV~~I~-~l~G~qy~~kv~e~~~a~~ks~g~y~daE~~aLekF~~~Fk~~-~fp~Gs~I~ft~sp~g~L~isfs~d 166 (230)
T PLN02559 89 EKFTRVTMIL-PLTGEQYSEKVTENCVAIWKSLGIYTDAEAKAVEKFKEAFKEE-TFPPGSSILFTHSPTGSLTVAFSKD 166 (230)
T ss_pred hhhEEEEEEE-eccccchHHHHhHHHHHHHHhcCCcchhHHHHHHHHHHHhcCC-CCCCCCEEEEEECCCCcEEEEEecC
Confidence 9999999996 69999999999999999999877543 3578999999999974 8999999999999999999887 3
Q ss_pred ----CEEeeEECCHhHHHHHHHHhcCCCCCCHHHHHHHHHhhhhcC
Q 043688 251 ----DQVVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF 292 (292)
Q Consensus 251 ----Gk~~G~I~s~~fa~ALfdiyLGd~PVSp~lK~s~aeglasl~ 292 (292)
+...++|+|+.+|+|+|++|||++||||++|+++|++|+.||
T Consensus 167 g~ipe~~~~~Ienk~l~eAv~e~~IG~~~VSP~aK~slA~~la~ll 212 (230)
T PLN02559 167 SSVPEVGNAVIENKLLCEAVLESIIGKHGVSPAAKLSLAARLSELL 212 (230)
T ss_pred CCCCccceEEEechHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 456688999999999999999999999999999999999986
No 7
>PF01052 SpoA: Surface presentation of antigens (SPOA); InterPro: IPR001543 Proteins in this group are involved in a secretory pathway responsible for the surface presentation of invasion plasmid antigen needed for the entry of Salmonella and other species into mammalian cells [, ].They could play a role in preserving the translocation competence of the IPA antigens and are required for secretion of the three IPA proteins []. The C-terminal region of flagellar motor switch proteins FliN and FliM is also included in this entry. ; PDB: 3UEP_A 1O9Y_B 1YAB_A.
Probab=68.67 E-value=8.5 Score=28.78 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=22.0
Q ss_pred cCCCCCEEEEEEeCCCeEEEEECCEEee
Q 043688 228 KLTSGSVIEISRLPGYTLQARVMDQVVS 255 (292)
Q Consensus 228 ~l~KGd~I~f~~~p~g~L~V~~nGk~~G 255 (292)
.+++||+|.|.+..+..+.+++||+..+
T Consensus 28 ~L~~Gdvi~l~~~~~~~v~l~v~g~~~~ 55 (77)
T PF01052_consen 28 NLKVGDVIPLDKPADEPVELRVNGQPIF 55 (77)
T ss_dssp C--TT-EEEECCESSTEEEEEETTEEEE
T ss_pred cCCCCCEEEeCCCCCCCEEEEECCEEEE
Confidence 3679999999999999999999998654
No 8
>PRK06789 flagellar motor switch protein; Validated
Probab=67.67 E-value=9.2 Score=29.55 Aligned_cols=29 Identities=10% Similarity=0.267 Sum_probs=25.8
Q ss_pred cCCCCCEEEEEEeCCCeEEEEECCEEeeE
Q 043688 228 KLTSGSVIEISRLPGYTLQARVMDQVVSN 256 (292)
Q Consensus 228 ~l~KGd~I~f~~~p~g~L~V~~nGk~~G~ 256 (292)
++.+|+.|.++...+.-+.+.+||+..|.
T Consensus 27 ~L~~Gsvi~Ldk~~~epvdI~vNg~lia~ 55 (74)
T PRK06789 27 HITKGTLYRLENSTKNTVRLMLENEEIGT 55 (74)
T ss_pred cCCCCCEEEeCCcCCCCEEEEECCEEEeE
Confidence 46799999999999999999999998764
No 9
>TIGR02480 fliN flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica.
Probab=65.88 E-value=9.6 Score=28.99 Aligned_cols=28 Identities=39% Similarity=0.609 Sum_probs=24.2
Q ss_pred cCCCCCEEEEEEeCCCeEEEEECCEEee
Q 043688 228 KLTSGSVIEISRLPGYTLQARVMDQVVS 255 (292)
Q Consensus 228 ~l~KGd~I~f~~~p~g~L~V~~nGk~~G 255 (292)
.+++||+|.|....+..+.+++||++.+
T Consensus 28 ~L~~Gdvi~L~~~~~~~v~l~v~g~~~~ 55 (77)
T TIGR02480 28 KLGEGSVIELDKLAGEPLDILVNGRLIA 55 (77)
T ss_pred cCCCCCEEEcCCCCCCcEEEEECCEEEE
Confidence 4779999999988888899999998654
No 10
>COG1886 FliN Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=58.13 E-value=13 Score=31.67 Aligned_cols=28 Identities=32% Similarity=0.539 Sum_probs=25.2
Q ss_pred CCCCCEEEEEEeCCCeEEEEECCEEeeE
Q 043688 229 LTSGSVIEISRLPGYTLQARVMDQVVSN 256 (292)
Q Consensus 229 l~KGd~I~f~~~p~g~L~V~~nGk~~G~ 256 (292)
+.+|++|.++..++..+.|.+||+..|.
T Consensus 92 l~~Gsvi~Ld~~~~~~VdI~vNg~~Ig~ 119 (136)
T COG1886 92 LGKGSVIELDKLAGEPVDILVNGRLIGR 119 (136)
T ss_pred cCCCCEEEcCCcCCCceEEEECCEEEEE
Confidence 5689999999999999999999998763
No 11
>PRK06033 hypothetical protein; Validated
Probab=54.53 E-value=21 Score=27.92 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=23.4
Q ss_pred cCCCCCEEEEEEeCCCeEEEEECCEEee
Q 043688 228 KLTSGSVIEISRLPGYTLQARVMDQVVS 255 (292)
Q Consensus 228 ~l~KGd~I~f~~~p~g~L~V~~nGk~~G 255 (292)
.+++||+|.|....+..+.+++||.+..
T Consensus 27 ~L~~GDVI~L~~~~~~~v~v~V~~~~~f 54 (83)
T PRK06033 27 RMGRGAVIPLDATEADEVWILANNHPIA 54 (83)
T ss_pred CCCCCCEEEeCCCCCCcEEEEECCEEEE
Confidence 4789999999987777899999997653
No 12
>PRK05698 fliN flagellar motor switch protein; Validated
Probab=51.40 E-value=22 Score=31.23 Aligned_cols=28 Identities=39% Similarity=0.624 Sum_probs=24.1
Q ss_pred cCCCCCEEEEEEeCCCeEEEEECCEEee
Q 043688 228 KLTSGSVIEISRLPGYTLQARVMDQVVS 255 (292)
Q Consensus 228 ~l~KGd~I~f~~~p~g~L~V~~nGk~~G 255 (292)
.+.+||+|.|+...+..+.|++||+.++
T Consensus 99 ~L~~GDVI~Ldk~~~epv~V~VnG~~~f 126 (155)
T PRK05698 99 QLNQGSVIELDRLAGEPLDVLVNGTLIA 126 (155)
T ss_pred CCCCCCEEEeCCCCCCCEEEEECCEEEE
Confidence 4679999999999888999999997653
No 13
>PRK08983 fliN flagellar motor switch protein; Validated
Probab=50.05 E-value=24 Score=29.90 Aligned_cols=27 Identities=33% Similarity=0.602 Sum_probs=23.9
Q ss_pred cCCCCCEEEEEEeCCCeEEEEECCEEe
Q 043688 228 KLTSGSVIEISRLPGYTLQARVMDQVV 254 (292)
Q Consensus 228 ~l~KGd~I~f~~~p~g~L~V~~nGk~~ 254 (292)
.+.+||+|.|+...+..+.|++||+.+
T Consensus 71 ~L~~GDVI~Ld~~~ddpv~v~Vng~~~ 97 (127)
T PRK08983 71 QLNQGSVVELDRVAGEPLDVMVNGTLI 97 (127)
T ss_pred CCCCCCEEEeCCCCCCCEEEEECCEEE
Confidence 578999999999988899999999754
No 14
>PRK07963 fliN flagellar motor switch protein FliN; Validated
Probab=46.65 E-value=29 Score=29.80 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=23.5
Q ss_pred cCCCCCEEEEEEeCCCeEEEEECCEEe
Q 043688 228 KLTSGSVIEISRLPGYTLQARVMDQVV 254 (292)
Q Consensus 228 ~l~KGd~I~f~~~p~g~L~V~~nGk~~ 254 (292)
.+.+||+|.|+...+..+.|++||..+
T Consensus 80 ~L~~GDVI~Ld~~~~epv~V~Vng~~i 106 (137)
T PRK07963 80 RLTQGSVVALDGLAGEPLDILINGYLI 106 (137)
T ss_pred CCCCCCEEEeCCCCCCCEEEEECCEEE
Confidence 477999999999888889999999754
No 15
>PRK08433 flagellar motor switch protein; Validated
Probab=45.28 E-value=33 Score=28.40 Aligned_cols=27 Identities=22% Similarity=0.524 Sum_probs=23.1
Q ss_pred cCCCCCEEEEEEeCCCeEEEEECCEEe
Q 043688 228 KLTSGSVIEISRLPGYTLQARVMDQVV 254 (292)
Q Consensus 228 ~l~KGd~I~f~~~p~g~L~V~~nGk~~ 254 (292)
.+++||+|.|+...+..+.++++|.+.
T Consensus 52 ~Lq~GDVI~Ld~~~~e~v~v~V~g~~~ 78 (111)
T PRK08433 52 KFEKGSVIDLEKPAGESVELYINGRII 78 (111)
T ss_pred CCCCCCEEEeCCCCCCCEEEEECCEEE
Confidence 477999999999888889999999654
No 16
>PRK08916 flagellar motor switch protein; Reviewed
Probab=42.42 E-value=35 Score=28.50 Aligned_cols=28 Identities=36% Similarity=0.548 Sum_probs=24.0
Q ss_pred cCCCCCEEEEEEeCCCeEEEEECCEEee
Q 043688 228 KLTSGSVIEISRLPGYTLQARVMDQVVS 255 (292)
Q Consensus 228 ~l~KGd~I~f~~~p~g~L~V~~nGk~~G 255 (292)
.+.+||+|.|....+..+.+++||+..+
T Consensus 65 ~L~~GDVI~Ld~~~~e~V~I~Vng~~~~ 92 (116)
T PRK08916 65 KLGPGSVLELDRKVGEAIDIYVNNRLVA 92 (116)
T ss_pred cCCCCCEEEcCCCCCCCEEEEECCEEEE
Confidence 3679999999988888899999997654
No 17
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=38.49 E-value=87 Score=27.80 Aligned_cols=63 Identities=17% Similarity=0.266 Sum_probs=43.1
Q ss_pred CcCCCCCEEEEEEeCCCeEEEEECCEEeeEECCHhHHHHH-----HHHhcCCCCCCHHHHHHHHHhhhhc
Q 043688 227 IKLTSGSVIEISRLPGYTLQARVMDQVVSNVESELLCKAY-----IHMYLGDDAFDKDAKEKLGMSLLSL 291 (292)
Q Consensus 227 ~~l~KGd~I~f~~~p~g~L~V~~nGk~~G~I~s~~fa~AL-----fdiyLGd~PVSp~lK~s~aeglasl 291 (292)
..+++|+.+.++-.=+|..+|.++|+.. +|.+.+ +.|| ...-+.+.+..+..++.+-+-|..+
T Consensus 18 ~~~~~~~~~~~~q~lgg~~t~~~~g~~~-r~~~~~-~da~g~~~~~~~~~~~~~~~~~~ee~V~eaL~tV 85 (174)
T TIGR03406 18 ITLPAGTEVTITQALGGNFTVVVEGNMA-RIDGKD-ADALGKEPPPPLDLPENADGEDNEDQVWEQLRTV 85 (174)
T ss_pred EEcCCCCEEEEEEccCCeEEEEEcCeEE-EecCcC-hhhhcCCCCCcCCCCcCccccccHHHHHHHHcCC
Confidence 4689999999999999999999988743 666554 2333 0111455566677777777766554
No 18
>PRK13690 hypothetical protein; Provisional
Probab=36.71 E-value=41 Score=30.34 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=34.1
Q ss_pred CCcCCCCCEEEEEEeCCCeEEEEECCEEeeEECCHhHHHHHHHHhc
Q 043688 226 DIKLTSGSVIEISRLPGYTLQARVMDQVVSNVESELLCKAYIHMYL 271 (292)
Q Consensus 226 ~~~l~KGd~I~f~~~p~g~L~V~~nGk~~G~I~s~~fa~ALfdiyL 271 (292)
...+++|+.+.+-++.+ ++-|+..|+-.|.+.++++|+..+
T Consensus 20 ~a~l~~g~i~VvGcSTS-----EV~G~~IGt~ss~eva~~i~~~l~ 60 (184)
T PRK13690 20 QANLKPGQIFVLGCSTS-----EVLGERIGTAGSLEVAEAIVEALL 60 (184)
T ss_pred hhCCCCCCEEEEecchH-----hhCCcccCCcChHHHHHHHHHHHH
Confidence 34689999999977655 367999999999999999998654
No 19
>PRK06788 flagellar motor switch protein; Validated
Probab=36.27 E-value=55 Score=27.46 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=22.8
Q ss_pred cCCCCCEEEEEEeCCCeEEEEECCEEe
Q 043688 228 KLTSGSVIEISRLPGYTLQARVMDQVV 254 (292)
Q Consensus 228 ~l~KGd~I~f~~~p~g~L~V~~nGk~~ 254 (292)
.+..||+|.|+..-+.-+.+++||+..
T Consensus 54 ~L~vGDVI~Ldk~~~dpv~v~Vng~~~ 80 (119)
T PRK06788 54 QLKVGDVLEVEKNLGHKVDVYLSNMKV 80 (119)
T ss_pred CCCCCCEEEeCCcCCCCEEEEECCEEE
Confidence 467899999998888889999998654
No 20
>PRK08035 type III secretion system protein SsaQ; Validated
Probab=31.01 E-value=59 Score=31.82 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=25.4
Q ss_pred cCCCCCEEEEEEeCCCeEEEEECCEEeeE
Q 043688 228 KLTSGSVIEISRLPGYTLQARVMDQVVSN 256 (292)
Q Consensus 228 ~l~KGd~I~f~~~p~g~L~V~~nGk~~G~ 256 (292)
.+++|++|.++...++.+.|.+||+.+|+
T Consensus 271 ~L~~GsVl~L~~~~~~~VdI~vNG~~ia~ 299 (323)
T PRK08035 271 QLAVGDVLPVGGCFYPEVTIRLNGRIIGQ 299 (323)
T ss_pred cCCCCCEEEcCCCCCCceEEEECCEEEEE
Confidence 58899999999877778999999998774
No 21
>TIGR02551 SpaO_YscQ type III secretion system apparatus protein YscQ/HrcQ. Genes in this family are found in type III secretion operons. The gene (YscQ) in Yersinia is essential for YOPs secretion, while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid, and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae.
Probab=30.80 E-value=59 Score=30.77 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=25.3
Q ss_pred cCCCCCEEEEEEeCCCeEEEEECCEEeeE
Q 043688 228 KLTSGSVIEISRLPGYTLQARVMDQVVSN 256 (292)
Q Consensus 228 ~l~KGd~I~f~~~p~g~L~V~~nGk~~G~ 256 (292)
.+++|++|.|....++.+.+++||+.+|.
T Consensus 253 ~L~~G~vl~L~~~~~~~v~l~~~g~~~~~ 281 (298)
T TIGR02551 253 ALQPGSVLELNVPVDGPVRLRANGRLLGR 281 (298)
T ss_pred CCCCCCEEEcCCCCCCcEEEEECCEEEEE
Confidence 57899999999888889999999987653
No 22
>TIGR01440 conserved hypothetical protein TIGR01440. Members of this family are uncharacterized proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome.
Probab=29.71 E-value=55 Score=29.22 Aligned_cols=40 Identities=13% Similarity=0.151 Sum_probs=33.7
Q ss_pred CcCCCCCEEEEEEeCCCeEEEEECCEEeeEECCHhHHHHHHHHhc
Q 043688 227 IKLTSGSVIEISRLPGYTLQARVMDQVVSNVESELLCKAYIHMYL 271 (292)
Q Consensus 227 ~~l~KGd~I~f~~~p~g~L~V~~nGk~~G~I~s~~fa~ALfdiyL 271 (292)
..+++|+.+.+-++.+ ++-|+..|+-.|.+.++++|+..+
T Consensus 14 a~l~~g~i~VvGcSTS-----EV~G~~IG~~ss~eva~~i~~~l~ 53 (172)
T TIGR01440 14 SNLKKGDLFVIGCSTS-----EVIGGKIGTNSSMEVAETIVNALD 53 (172)
T ss_pred hCCCCCCEEEEecchH-----HhCCcccCCcChHHHHHHHHHHHH
Confidence 3588999999977655 367999999999999999998764
No 23
>PRK06933 type III secretion system protein; Validated
Probab=25.78 E-value=78 Score=30.69 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=25.2
Q ss_pred cCCCCCEEEEEEeCCCeEEEEECCEEeeE
Q 043688 228 KLTSGSVIEISRLPGYTLQARVMDQVVSN 256 (292)
Q Consensus 228 ~l~KGd~I~f~~~p~g~L~V~~nGk~~G~ 256 (292)
.+.+|++|.+....++.+.|++||+.+|.
T Consensus 257 ~L~~GdVi~L~~~~~~~V~I~vng~~i~~ 285 (308)
T PRK06933 257 SLQPGSLIDLTTPVDGEVRLLANGRLLGH 285 (308)
T ss_pred cCCCCCEEEcCCCCCCCEEEEECCEEEEE
Confidence 57899999999888889999999987653
No 24
>PF10850 DUF2653: Protein of unknown function (DUF2653); InterPro: IPR020516 This entry contains proteins with no known function.
Probab=24.03 E-value=3.9e+02 Score=21.57 Aligned_cols=67 Identities=19% Similarity=0.179 Sum_probs=45.6
Q ss_pred cHHHHHHHHhhcccCCcCCCCCE-EEEEEeCCCeEE--EEECCEEeeEECCHhHHHHHH---HHhcCCCCCCHH
Q 043688 212 NDELANKVMGHASEDIKLTSGSV-IEISRLPGYTLQ--ARVMDQVVSNVESELLCKAYI---HMYLGDDAFDKD 279 (292)
Q Consensus 212 ~~e~l~~f~~~F~~~~~l~KGd~-I~f~~~p~g~L~--V~~nGk~~G~I~s~~fa~ALf---diyLGd~PVSp~ 279 (292)
+++-++..+-++.....+.|-++ +.|.|..+.|.. |++||+. -.+-...+-.|+- .-+++=+|.+..
T Consensus 7 EqeIiNAvCl~~A~~~~i~P~dVeVeL~yDdd~GFsAEv~~ngr~-q~l~~~nlieAIr~~l~~~~~~~p~~~~ 79 (91)
T PF10850_consen 7 EQEIINAVCLHIAERKGIQPEDVEVELMYDDDYGFSAEVWVNGRS-QYLIEANLIEAIRQYLEEEYNMDPFRAG 79 (91)
T ss_pred HHHHHHHHHHHHHHhcCCCcccEEEEEEEecCCCeeEEEEECCeE-EEEchhhHHHHHHHHHHHHhCCCcchhh
Confidence 45556666655555555677776 899999987665 7789984 3577888888863 445566666543
No 25
>PF08265 YL1_C: YL1 nuclear protein C-terminal domain; InterPro: IPR013272 This domain is found at the C terminus in proteins of the YL1 family []. These proteins have been shown to be DNA-binding and may be transcription factors []. This domain is also found in proteins that do not belong to the YL1 family.
Probab=22.69 E-value=48 Score=21.29 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=14.3
Q ss_pred cCCCeeeccCCCcccCcc
Q 043688 92 EDIAVEVEPKTGVSFPVK 109 (292)
Q Consensus 92 ~~~~~vvEp~TGV~FP~~ 109 (292)
+-++-.+||.||+.|-..
T Consensus 7 glpA~Y~DP~T~l~Y~n~ 24 (30)
T PF08265_consen 7 GLPARYRDPKTGLPYANS 24 (30)
T ss_pred CCCccccCCCCCCcccCH
Confidence 456778999999998653
No 26
>PRK08119 flagellar motor switch protein; Validated
Probab=22.40 E-value=1.1e+02 Score=30.08 Aligned_cols=27 Identities=30% Similarity=0.578 Sum_probs=23.6
Q ss_pred cCCCCCEEEEEEeCCCeEEEEECCEEe
Q 043688 228 KLTSGSVIEISRLPGYTLQARVMDQVV 254 (292)
Q Consensus 228 ~l~KGd~I~f~~~p~g~L~V~~nGk~~ 254 (292)
.+++||+|.|+..-+..+.|++||+.+
T Consensus 326 ~L~~Gdvi~Ld~~~~~~v~v~v~g~~~ 352 (382)
T PRK08119 326 ELGTGSIIELDKLAGEPVDILVNGKLI 352 (382)
T ss_pred cCCCCCEEEeCCCCCCcEEEEECCEEE
Confidence 588999999998877889999999754
No 27
>PRK08158 type III secretion system protein SpaO; Validated
Probab=21.76 E-value=97 Score=30.06 Aligned_cols=29 Identities=10% Similarity=0.253 Sum_probs=25.5
Q ss_pred cCCCCCEEEEEEeCCCeEEEEECCEEeeE
Q 043688 228 KLTSGSVIEISRLPGYTLQARVMDQVVSN 256 (292)
Q Consensus 228 ~l~KGd~I~f~~~p~g~L~V~~nGk~~G~ 256 (292)
.+.+|++|.++...++.+.|++||+.+|+
T Consensus 250 ~L~~GsVl~L~~~~~~~V~I~vNg~lva~ 278 (303)
T PRK08158 250 ELCQQQLLSLPTNAELNVEIRANGALLGN 278 (303)
T ss_pred hcCCCCEEECCCCCCCceEEEECCEEEEE
Confidence 46789999999999999999999998764
No 28
>PRK06666 fliM flagellar motor switch protein FliM; Validated
Probab=21.60 E-value=1.2e+02 Score=29.07 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=24.0
Q ss_pred cCCCCCEEEEEEeCCCeEEEEECCEEe
Q 043688 228 KLTSGSVIEISRLPGYTLQARVMDQVV 254 (292)
Q Consensus 228 ~l~KGd~I~f~~~p~g~L~V~~nGk~~ 254 (292)
.+++||+|.|....+..+.|+++|+++
T Consensus 278 ~L~vGDVI~L~~~~~~~v~v~v~~~~~ 304 (337)
T PRK06666 278 NLKVGDVIPLEKPADDPLIVYVDGKPK 304 (337)
T ss_pred CCCCCCEEEeCCCCCCcEEEEECCEEE
Confidence 588999999999888889999999764
No 29
>COG4475 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.15 E-value=1.2e+02 Score=27.09 Aligned_cols=48 Identities=13% Similarity=0.234 Sum_probs=35.5
Q ss_pred HHHhhcccCCcCCCCCEEEEEEeCCCeEEEEECCEEeeEECCHhHHHHHHHHh
Q 043688 218 KVMGHASEDIKLTSGSVIEISRLPGYTLQARVMDQVVSNVESELLCKAYIHMY 270 (292)
Q Consensus 218 ~f~~~F~~~~~l~KGd~I~f~~~p~g~L~V~~nGk~~G~I~s~~fa~ALfdiy 270 (292)
...+.+.+...+++|+-+.+-++.+ ++.|...|+..|.+++..++...
T Consensus 10 ~vl~d~~~~s~lk~g~lfvlG~StS-----EV~G~~IGt~sS~evae~i~~~l 57 (180)
T COG4475 10 TVLDDVQDQSELKQGQLFVLGLSTS-----EVAGSRIGTVSSMEVAETIVSAL 57 (180)
T ss_pred HHHHHHHHhhccCCCCEEEEecchH-----hhhhcccCccchHHHHHHHHHHH
Confidence 3333344444688999999966544 46899999999999999988754
No 30
>TIGR01397 fliM_switch flagellar motor switch protein FliM. Members of this family are the flagellar motor switch protein FliM. The family excludes FliM homologs that lack an N-terminal region critical to interaction with phosphorylated CheY. One set lacking this N-terminal region is found in Rhizobium meliloti, in which the direction of flagellar rotation is not reversible (i.e. the FliM homolog does not act to reverse the motor direction), and in related species. Another is found in Buchnera, an obligate intracellular endosymbiont with genes for many of the components of the flagellar apparatus, but not, apparently, for flagellin iself.
Probab=20.94 E-value=1.2e+02 Score=28.64 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=24.0
Q ss_pred cCCCCCEEEEEEeCCCeEEEEECCEEe
Q 043688 228 KLTSGSVIEISRLPGYTLQARVMDQVV 254 (292)
Q Consensus 228 ~l~KGd~I~f~~~p~g~L~V~~nGk~~ 254 (292)
.+++||+|.|....+..+.++++|+++
T Consensus 273 ~L~~GDVI~L~~~~~~~v~v~v~g~~~ 299 (320)
T TIGR01397 273 NLQVGDVIPLNTDMPEEVSLRVGGRPK 299 (320)
T ss_pred CCCCCCEEEeCCCCCCcEEEEECCEEE
Confidence 589999999998888889999999765
No 31
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=20.50 E-value=1.8e+02 Score=19.69 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=17.1
Q ss_pred cCCCCCEEEEEEeCCCeEEEE
Q 043688 228 KLTSGSVIEISRLPGYTLQAR 248 (292)
Q Consensus 228 ~l~KGd~I~f~~~p~g~L~V~ 248 (292)
.+.+||.+.+....++.+.+.
T Consensus 20 ~l~~Gd~v~i~~~~~g~i~i~ 40 (47)
T PF04014_consen 20 GLKPGDEVEIEVEGDGKIVIR 40 (47)
T ss_dssp TSSTTTEEEEEEETTSEEEEE
T ss_pred CCCCCCEEEEEEeCCCEEEEE
Confidence 478999999999988766654
No 32
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=20.30 E-value=1.7e+02 Score=20.23 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=22.6
Q ss_pred CCcCCCCCEEEEE--EeCCCeEEEEECCEEeeEECCH
Q 043688 226 DIKLTSGSVIEIS--RLPGYTLQARVMDQVVSNVESE 260 (292)
Q Consensus 226 ~~~l~KGd~I~f~--~~p~g~L~V~~nGk~~G~I~s~ 260 (292)
..+|++|+.|.+. ..+++-.....+|+ .|-|+..
T Consensus 15 ~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~-~G~~P~~ 50 (55)
T PF07653_consen 15 ELSFKKGDVIEVLGEKDDDGWWLGENNGR-RGWFPSS 50 (55)
T ss_dssp B-EB-TTEEEEEEEEECSTSEEEEEETTE-EEEEEGG
T ss_pred ceEEecCCEEEEEEeecCCCEEEEEECCc-EEEEcHH
Confidence 4578999999997 66666666666554 4777654
No 33
>PRK05264 transcriptional repressor protein MetJ; Provisional
Probab=20.29 E-value=92 Score=25.28 Aligned_cols=29 Identities=34% Similarity=0.676 Sum_probs=23.7
Q ss_pred ECCHhHHHHHHHHhcCC-CCCCHHHHHHHH
Q 043688 257 VESELLCKAYIHMYLGD-DAFDKDAKEKLG 285 (292)
Q Consensus 257 I~s~~fa~ALfdiyLGd-~PVSp~lK~s~a 285 (292)
-.|+.+|.|+|..|-|. =|-+.++++.--
T Consensus 53 TNSELLCEAFLHA~TGQPLP~D~Dl~Kd~~ 82 (105)
T PRK05264 53 TNSELLCEAFLHAFTGQPLPDDEDLRKERS 82 (105)
T ss_pred ccHHHHHHHHHHHHcCCCCCChhhhhhcCc
Confidence 46889999999999995 588888877543
No 34
>PF04023 FeoA: FeoA domain; InterPro: IPR007167 This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble SH3-domain protein probably located in the cytosol; FeoB, a large protein with a cytosolic N-terminal G-protein domain and a C-terminal integral inner-membrane domain containing two 'Gate' motifs which likely functions as the Fe2+ permease; and FeoC, a small protein apparently functioning as an [Fe-S]-dependent transcriptional repressor [, ]. Feo allows the bacterial cell to acquire iron from its environment. ; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 1G3T_A 1C0W_B 1BI3_A 1QVP_A 1BI1_A 1BYM_A 2QQB_A ....
Probab=20.26 E-value=2.9e+02 Score=19.85 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=21.0
Q ss_pred CCCCCEEEEEE-eC-CCeEEEEECCEEee
Q 043688 229 LTSGSVIEISR-LP-GYTLQARVMDQVVS 255 (292)
Q Consensus 229 l~KGd~I~f~~-~p-~g~L~V~~nGk~~G 255 (292)
+.+|+.|.+.. .| ++.+.+.++|+...
T Consensus 33 l~~G~~i~v~~~~~~~~~~~i~~~~~~i~ 61 (74)
T PF04023_consen 33 LTPGSEITVIRKNPFGGPVVIKVDGSRIA 61 (74)
T ss_dssp -STTEEEEEEEEETTSSEEEEEETTEEEE
T ss_pred CCCCCEEEEEEeCCCCCCEEEEECCEEEE
Confidence 67999999994 45 67899999987653
No 35
>PRK05933 type III secretion system protein; Validated
Probab=20.18 E-value=1.3e+02 Score=29.81 Aligned_cols=29 Identities=17% Similarity=0.270 Sum_probs=24.7
Q ss_pred cCCCCCEEEEEEeC-CCeEEEEECCEEeeE
Q 043688 228 KLTSGSVIEISRLP-GYTLQARVMDQVVSN 256 (292)
Q Consensus 228 ~l~KGd~I~f~~~p-~g~L~V~~nGk~~G~ 256 (292)
.+.+|++|.++... +..+.|.+||+.+|+
T Consensus 326 ~L~~GSVIeLDk~a~GEpVDI~VNGrLIAR 355 (372)
T PRK05933 326 KLGPGSILQFDGVHPTLGVDIILNGAKVGR 355 (372)
T ss_pred ccCCCCEEEeCCcCCCCCEEEEECCEEEee
Confidence 57899999999875 678999999998764
No 36
>KOG3381 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.03 E-value=1.2e+02 Score=26.84 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=20.5
Q ss_pred cccCcccCCCC--ceeeeeeeeEEEeee
Q 043688 104 VSFPVKLNDGK--QLNCVGLRKKSMLGL 129 (292)
Q Consensus 104 V~FP~~l~~g~--~LnGaGvR~K~I~~l 129 (292)
|.|-++++..+ +|.|.++|.|-.-.|
T Consensus 82 i~ftPTipHCSmaTlIGLcIrVkl~RsL 109 (161)
T KOG3381|consen 82 ITFTPTIPHCSMATLIGLCIRVKLLRSL 109 (161)
T ss_pred EEeccCCCcchHHhhhhheeeeeeeecC
Confidence 46777776554 999999999987665
Done!