Query 043688
Match_columns 292
No_of_seqs 110 out of 280
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 12:31:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043688.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043688hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4doo_A Chalcone-flavanone isom 100.0 2.3E-49 7.7E-54 353.2 22.7 198 93-291 1-202 (205)
2 4dol_A AT1G53520, 94270-95700, 100.0 1.7E-44 5.7E-49 323.9 18.7 195 92-292 8-216 (217)
3 4dok_A Similarity to chalcone- 100.0 2E-43 6.8E-48 316.6 20.0 188 102-292 8-207 (208)
4 4doi_A Chalcone--flavonone iso 100.0 4.2E-43 1.4E-47 321.3 18.9 189 101-292 21-224 (246)
5 1eyq_A Chalcone-flavonone isom 100.0 1.8E-42 6.3E-47 312.9 18.9 189 101-292 10-213 (222)
6 3uep_A YSCQ-C, type III secret 69.7 7.8 0.00027 29.9 5.3 27 229-255 40-66 (96)
7 1o6a_A Putative flagellar moto 65.1 10 0.00035 29.0 5.1 27 229-255 40-66 (96)
8 1o9y_A HRCQ2; secretory protei 63.8 7.5 0.00026 29.0 4.0 28 228-255 35-62 (84)
9 2e63_A KIAA1787 protein; struc 40.3 28 0.00097 29.4 4.3 30 228-257 117-146 (170)
10 1f56_A Plantacyanin; cupredoxi 20.2 84 0.0029 23.6 3.4 26 224-249 14-39 (91)
11 2cbp_A Cucumber basic protein; 20.1 83 0.0028 23.8 3.3 26 224-249 19-44 (96)
No 1
>4doo_A Chalcone-flavanone isomerase family protein; chalcone-isomerase like fold, fatty-acid binding; HET: DAO; 1.90A {Arabidopsis thaliana}
Probab=100.00 E-value=2.3e-49 Score=353.22 Aligned_cols=198 Identities=36% Similarity=0.665 Sum_probs=184.1
Q ss_pred CCCeeeccCCCcccCcccCCCCceeeeeeeeEEEeee-eeEEEEEEEeecchhHHHHHhhhhcccch---hchHHHHHHH
Q 043688 93 DIAVEVEPKTGVSFPVKLNDGKQLNCVGLRKKSMLGL-GIKIYGFGIYADNEKLKELLRSKIGKALA---KATKEMYQTV 168 (292)
Q Consensus 93 ~~~~vvEp~TGV~FP~~l~~g~~LnGaGvR~K~I~~l-~vKVYA~GLYl~~~sl~~~L~~k~~~~~~---~~~~~f~~~L 168 (292)
+++++|||+|||+||+.++.+.+|+|+|+|+++|.++ +||||++|||+++++++++|+.||++.++ .++.+||++|
T Consensus 1 ~~~~~vep~tgv~FP~~~~~~~~L~G~GvR~~~i~~~~~ikvYa~GlYl~~~~~~~~L~~k~~~~~~~el~~~~~~~~~i 80 (205)
T 4doo_A 1 ADESVVEPKTGFSFPASIGDSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGDKYANLPASEIRGNKSFMDDL 80 (205)
T ss_dssp --CCEECTTTCCEECSEETTTEEEEEEEEEEEECSTTCEEEEEEEEEEEEHHHHHHHHHHHSTTCCHHHHHTCTTHHHHH
T ss_pred CCCccccCCcCCcCCCccCCCceEEEeeeeEEEEeeccceEEEEEEEEeCHHHHHHHHHhhhcCCCHHHHcccHHHHHHH
Confidence 3678999999999999999878999999999999876 89999999999999999899999999774 3677899999
Q ss_pred hcCCCcceEEEEEeeCccchhHHHHHHHHHHHhhhhhccCCCccHHHHHHHHhhcccCCcCCCCCEEEEEEeCCCeEEEE
Q 043688 169 IDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKNDELANKVMGHASEDIKLTSGSVIEISRLPGYTLQAR 248 (292)
Q Consensus 169 l~~d~~~~iRLviv~r~v~~~~l~daf~esl~~rl~~~~~~~d~~e~l~~f~~~F~~~~~l~KGd~I~f~~~p~g~L~V~ 248 (292)
+++++++++||++++++++++|++++|++++++|+++.+.. .+++.|++|.++|++..+++||++|+|+|.|++++.++
T Consensus 81 l~~~~~k~iri~~~~~~i~~~~~~da~~~~i~~~~~~~~~~-~~~~~l~~f~~~F~~~~~~~kGd~i~~~~~p~~~l~~~ 159 (205)
T 4doo_A 81 MEADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKFGGS-DNDELLQSFTSLFKDEYKIPRNSTIDLTKDPGHVLSVA 159 (205)
T ss_dssp HHSCCCEEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHSCS-CCHHHHHHHHGGGTTCCCCCTTCEEEEEEETTTEEEEE
T ss_pred HcCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccCCCCCCCCEEEEEEcCCCcEEEE
Confidence 99999999999999878999999999999999999887644 37899999999998777899999999999999999999
Q ss_pred ECCEEeeEECCHhHHHHHHHHhcCCCCCCHHHHHHHHHhhhhc
Q 043688 249 VMDQVVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSL 291 (292)
Q Consensus 249 ~nGk~~G~I~s~~fa~ALfdiyLGd~PVSp~lK~s~aeglasl 291 (292)
+||+..|+|+++.|++|||++|||++|+||++|+++++||++|
T Consensus 160 ~~g~~~g~I~~~~f~~al~~iwLG~~pvsp~lk~~l~~~l~~l 202 (205)
T 4doo_A 160 IEGNHVGSVKSHLLCRSILDLYIGEEPFDKNAREDFLDNAASL 202 (205)
T ss_dssp ETTEEEEEEECHHHHHHHHHHHHSSSCSCHHHHHHHHHHHHHH
T ss_pred ECCeeeEEECCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987
No 2
>4dol_A AT1G53520, 94270-95700, chalcon; chalcone-isomerase like fold, fatty-acid binding, isomerase; HET: PLM; 1.70A {Arabidopsis thaliana}
Probab=100.00 E-value=1.7e-44 Score=323.91 Aligned_cols=195 Identities=20% Similarity=0.300 Sum_probs=174.4
Q ss_pred cCC-CeeeccCCCcccCcccCC-C--C--ceeeeeeeeEEEeeeeeEEEEEEEeecchhHHHHHhhhhcccchh---chH
Q 043688 92 EDI-AVEVEPKTGVSFPVKLND-G--K--QLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAK---ATK 162 (292)
Q Consensus 92 ~~~-~~vvEp~TGV~FP~~l~~-g--~--~LnGaGvR~K~I~~l~vKVYA~GLYl~~~sl~~~L~~k~~~~~~~---~~~ 162 (292)
+++ .++|||+|||+||++++. + + +|+|+|+|+|+|.|++||||++|||++++.+++ |+ +|++.++. ++.
T Consensus 8 ~~~~~~v~e~~tgv~fp~~~~~~~~~~~l~L~G~GvR~~~i~~~~ikvYa~glYl~~~~~~~-L~-~~~~~~~~el~~~~ 85 (217)
T 4dol_A 8 GNAEDYAEETATSVKFKRSVTLPGCSSPLSLLGTGFREKKFAIIGVKVYAAGYYVNESILSG-LS-AWTGRSADEIQRDS 85 (217)
T ss_dssp ---CCEEECTTTCCEEESEECCTTCSSCEEEEEEEEEEEESSSSEEEEEEEEEEECGGGTGG-GG-GGTTCCHHHHHTCH
T ss_pred CCccceeecCCCCccCCCcccCCCCCCceEEEEEEEEEEEEeeeEEEEEEEEEEcCHHHHHH-HH-hhcCCCHHHHcccH
Confidence 554 499999999999999983 3 2 999999999999999999999999999987654 66 88887753 678
Q ss_pred HHHHHHhcCCCcceEEEEEeeCccchhHHHHHHHHHHHhhhhhccCCCccHHHHHHHHhhcccCCcCCCCCEEEEEEeCC
Q 043688 163 EMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKNDELANKVMGHASEDIKLTSGSVIEISRLPG 242 (292)
Q Consensus 163 ~f~~~Ll~~d~~~~iRLviv~r~v~~~~l~daf~esl~~rl~~~~~~~d~~e~l~~f~~~F~~~~~l~KGd~I~f~~~p~ 242 (292)
+||++|+++|+++++||++++ +++.++++++|.+++++|+++.+. .+++.|++|.++|++ .+++|||+|+|+|.|+
T Consensus 86 ~~~~~il~~~~~k~lri~~~R-~i~~~~l~~a~~e~i~~~~~~~~~--~~~~~l~~f~~~F~d-~~v~kGd~i~~~~~p~ 161 (217)
T 4dol_A 86 SLFVSIFQAQAEKSLQIVLVR-DVDGKTFWDALDEAISPRIKSPSS--EDTTALSTFCCIFQN-RPLNKGSVILLTWINT 161 (217)
T ss_dssp HHHHHHHHSSSCEEEEEEESS-CBCHHHHHHHHHHHHTTTCSSCCH--HHHHHHHHHHHHHTT-CCBCTTCEEEEEEEET
T ss_pred HHHHHHHcCCCceEEEEEEEe-cCCHHHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHhCC-CcCCCCCEEEEEEcCC
Confidence 999999999999999999995 599999999999999999876542 368899999999996 4899999999999999
Q ss_pred CeEEEEEC--C---EEeeEECCHhHHHHHHHHhcCCCCCCHHHHHHHHHhhhhcC
Q 043688 243 YTLQARVM--D---QVVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF 292 (292)
Q Consensus 243 g~L~V~~n--G---k~~G~I~s~~fa~ALfdiyLGd~PVSp~lK~s~aeglasl~ 292 (292)
+++.++++ | +..|+|+++.|++|||+||||++|+||+||+++++||++||
T Consensus 162 ~~l~i~~~~~g~~~~~~g~I~~~~f~~A~~~iwLG~~p~sp~lk~~L~~~l~~l~ 216 (217)
T 4dol_A 162 SNMLVSVSSGGLPTNVDATIESGNVTSALFDVFFGDSPVSPTLKSSVANQLAMTL 216 (217)
T ss_dssp TEEEEEEESSSCCCSCCEEEECHHHHHHHHHHHHSSSCSCHHHHHHHHHHHHHHC
T ss_pred CCEEEEEeCCCccccceeEeCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhh
Confidence 99999996 5 56899999999999999999999999999999999999986
No 3
>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}
Probab=100.00 E-value=2e-43 Score=316.56 Aligned_cols=188 Identities=15% Similarity=0.219 Sum_probs=170.1
Q ss_pred CCcccCcccCCCC--ceeeeeeeeEEEeeeeeEEEEEEEeecchhHHHHHhhhhcccchh---chHHHHHHHhcCCCcce
Q 043688 102 TGVSFPVKLNDGK--QLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAK---ATKEMYQTVIDSDAGMT 176 (292)
Q Consensus 102 TGV~FP~~l~~g~--~LnGaGvR~K~I~~l~vKVYA~GLYl~~~sl~~~L~~k~~~~~~~---~~~~f~~~Ll~~d~~~~ 176 (292)
.||+||+.++.++ +|+|+|+|.|.|.|+.|||||+|||+++++++.+| .+|++.++. ++.+||++|+++|+++.
T Consensus 8 ~gv~FP~~~~~~~~L~L~GaGvR~~~I~~~~iKvYa~GlYl~~~~~~~~l-~kwk~~~~~eL~~~~~f~~~ii~~p~eK~ 86 (208)
T 4dok_A 8 HEVPFPPQIITSKPLSLLGQGITDIEIHFLQVKFTAIGVYLDPSDVKTHL-DNWKGKTGKELAGDDDFFDALASAEMEKV 86 (208)
T ss_dssp TTEEECSEEESSSEEEEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHC-GGGTTCCHHHHHTCHHHHHHHHHSSSCEE
T ss_pred ccEECCccccCCCcceeeeeeeeeEeeeeeEEEEEEEEEEecHHHHHHHH-hhhcCCCHHHHccchHHHHHHhcCcccce
Confidence 4999999998554 89999999999999999999999999998888888 899998863 78899999999999999
Q ss_pred EEEEEeeCccchhHHHHHHHHHHHhhhhhccCCC-ccHHHHHHHHhhcccCCcCCCCCEEEEEEeCC-CeEEEE--ECCE
Q 043688 177 VRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGK-KNDELANKVMGHASEDIKLTSGSVIEISRLPG-YTLQAR--VMDQ 252 (292)
Q Consensus 177 iRLviv~r~v~~~~l~daf~esl~~rl~~~~~~~-d~~e~l~~f~~~F~~~~~l~KGd~I~f~~~p~-g~L~V~--~nGk 252 (292)
+||++++ +++.++++++|++++++|+++.+..+ ++.++|++|.++|++ ..+|||++|+|+|.|+ |.|.|. .||+
T Consensus 87 iri~~ir-~l~g~~~~~a~~e~~~~~~~~~~~~~~~e~~aL~~f~~~F~~-~~~~~G~~I~~~~~p~~G~L~i~~s~~G~ 164 (208)
T 4dok_A 87 IRVVVIK-EIKGAQYGVQLENTVRDRLAEEDKYEEEEETELEKVVGFFQS-KYFKANSVITYHFSAKDGICEIGFETEGK 164 (208)
T ss_dssp EEEEESS-CEEHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHT-CEECTTCEEEEEECSSSCCEEEEEECTTS
T ss_pred EEEEEEe-cCCcHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHhcc-CCCCCCCEEEEEEeCCCCeEEEEEEeCCE
Confidence 9999995 69999999999999999999877543 367899999999986 4799999999999998 676655 5898
Q ss_pred Eee--EECCHhHHHHHHHHhc-CCCCCCHHHHHHHHHhhhhcC
Q 043688 253 VVS--NVESELLCKAYIHMYL-GDDAFDKDAKEKLGMSLLSLF 292 (292)
Q Consensus 253 ~~G--~I~s~~fa~ALfdiyL-Gd~PVSp~lK~s~aeglasl~ 292 (292)
+.| +|+|+.||+|||++|| |++||||++|+++++||++||
T Consensus 165 ~~~~~~I~~~~l~~All~~yl~G~~pvsp~lK~sla~~l~~ll 207 (208)
T 4dok_A 165 EEEKLKVENANVVGMMQRWYLSGSRGVSPSTIVSIADSISAVL 207 (208)
T ss_dssp CCEEEEECCHHHHHHHHHHHSCTTTCSCHHHHHHHHHHHHHHH
T ss_pred eccccccCCHHHHHHHHHHeeCCCCCCCHHHHHHHHHHHHHhh
Confidence 665 7999999999999999 999999999999999999985
No 4
>4doi_A Chalcone--flavonone isomerase 1; chalcone-flavanone isomerase; 1.55A {Arabidopsis thaliana}
Probab=100.00 E-value=4.2e-43 Score=321.28 Aligned_cols=189 Identities=16% Similarity=0.214 Sum_probs=171.1
Q ss_pred CCCcccCcccCC---CC--ceeeeeeeeEEEeeeeeEEEEEEEeecchhHHHHHhhhhcccchh---chHHHHHHHhcCC
Q 043688 101 KTGVSFPVKLND---GK--QLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAK---ATKEMYQTVIDSD 172 (292)
Q Consensus 101 ~TGV~FP~~l~~---g~--~LnGaGvR~K~I~~l~vKVYA~GLYl~~~sl~~~L~~k~~~~~~~---~~~~f~~~Ll~~d 172 (292)
-+||+||+.++. ++ +|+|+|+|.|.|.|+.|||||+|||++++ +..+|+.+|++.++. ++.+||++|+++|
T Consensus 21 V~gV~FP~~v~~p~~~~~L~L~GaGvR~k~I~~~~vKvYAiGlYl~~~-~~~~L~~kwkgk~~~eL~~~~~ff~~il~~p 99 (246)
T 4doi_A 21 VDSVTFVPSVKSPASSNPLFLGGAGVRGLDIQGKFVIFTVIGVYLEGN-AVPSLSVKWKGKTTEELTESIPFFREIVTGA 99 (246)
T ss_dssp ETTEEECSEEECTTTCCEEEEEEEEEEEEEETTEEEEEEEEEEEECTT-HHHHHHHHHTTCCHHHHHHCHHHHHHHHHCS
T ss_pred ECceECCCeeccCCCCCceeEecceeeceeeeeeEEEEEEEEEEechh-HHHHhhhhhcCCCHHHhcccHHHHHHHHcCC
Confidence 479999999973 33 99999999999999999999999999997 556799999999863 7889999999999
Q ss_pred CcceEEEEEeeCccchhHHHHHHHHHHHhhhhhccCCC-ccHHHHHHHHhhcccCCcCCCCCEEEEEEeCCCeEEEEE--
Q 043688 173 AGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGK-KNDELANKVMGHASEDIKLTSGSVIEISRLPGYTLQARV-- 249 (292)
Q Consensus 173 ~~~~iRLviv~r~v~~~~l~daf~esl~~rl~~~~~~~-d~~e~l~~f~~~F~~~~~l~KGd~I~f~~~p~g~L~V~~-- 249 (292)
++|.+||++++ +++.++++++|++++++|++..+... .+.++|++|.++|++. .++||++|+|+|.|+++|.|++
T Consensus 100 ~eK~lrl~~ir-~l~g~~~~~al~e~l~~rlk~~g~~~~~e~~aL~~F~~~F~~~-~l~kGs~I~~~~~p~g~l~i~~s~ 177 (246)
T 4doi_A 100 FEKFIKVTMKL-PLTGQQYSEKVTENCVAIWKQLGLYTDCEAKAVEKFLEIFKEE-TFPPGSSILFALSPTGSLTVAFSK 177 (246)
T ss_dssp SCEEEEEEESS-CEEHHHHHHHHTTTHHHHHHHHTCCCHHHHHHHHHHHHHHTTC-EECTTCEEEEEECTTSEEEEEEES
T ss_pred cceEEEEEEEe-cCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhccC-cCCCCCEEEEEEeCCCcEEEEEec
Confidence 99999999995 69999999999999999998766543 3678999999999864 7999999999999999999988
Q ss_pred CCE----EeeEECCHhHHHHHHHHhcCCCCCCHHHHHHHHHhhhhcC
Q 043688 250 MDQ----VVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF 292 (292)
Q Consensus 250 nGk----~~G~I~s~~fa~ALfdiyLGd~PVSp~lK~s~aeglasl~ 292 (292)
||+ ..++|+|+.||+|||++|||++||||++|++++++|++||
T Consensus 178 ~G~~p~~~~~~I~s~~l~~All~~ylG~~pVsp~lK~sla~~la~ll 224 (246)
T 4doi_A 178 DDSIPETGIAVIENKLLAEAVLESIIGKNGVSPGTRLSVAERLSQLM 224 (246)
T ss_dssp SSCCCSSCSEEEECHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHH
T ss_pred CCccccccccccCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 887 4678999999999999999999999999999999999985
No 5
>1eyq_A Chalcone-flavonone isomerase 1; chalcone isomerase, flavonoid; HET: NAR; 1.85A {Medicago sativa} SCOP: d.36.1.1 PDB: 1eyp_A* 1fm7_A* 1fm8_A* 1jep_A* 1jx0_A* 1jx1_A*
Probab=100.00 E-value=1.8e-42 Score=312.92 Aligned_cols=189 Identities=19% Similarity=0.220 Sum_probs=168.5
Q ss_pred CCCcccCcccCC---CC--ceeeeeeeeEEEeeeeeEEEEEEEeecchhHHHHHhhhhcccchh---chHHHHHHHhcCC
Q 043688 101 KTGVSFPVKLND---GK--QLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAK---ATKEMYQTVIDSD 172 (292)
Q Consensus 101 ~TGV~FP~~l~~---g~--~LnGaGvR~K~I~~l~vKVYA~GLYl~~~sl~~~L~~k~~~~~~~---~~~~f~~~Ll~~d 172 (292)
-|||+||++++. ++ +|+|+|+|.|+|.|++||||++|||++++.. .+|+.+|++.++. ++.+||++|+++|
T Consensus 10 v~gv~FP~~~~~p~~~~~L~L~GaGvR~k~i~~~~iKvYa~GlYl~~~~~-~~L~~k~kg~~a~el~~~~~f~~~li~~~ 88 (222)
T 1eyq_A 10 VENLEYPAVVTSPVTGKSYFLGGAGERGLTIEGNFIKFTAIGVYLEDIAV-ASLAAKWKGKSSEELLETLDFYRDIISGP 88 (222)
T ss_dssp ETTEEECSEEECTTTCCEEEEEEEEEEEEEETTEEEEEEEEEEEEETTHH-HHHHHHHTTCCHHHHHTCHHHHHHHHHCS
T ss_pred EcceECCCccccCCCCCceEEeeeEEEEEEeeceEEEEEEEEEEeCHHHh-hHhhhhhcCCCHHHhcccHHHHHHHHcCC
Confidence 589999999873 23 9999999999999999999999999999754 5688999998753 7889999999999
Q ss_pred CcceEEEEEeeCccchhHHHHHHHHHHHhhhhhccCCC-ccHHHHHHHHhhcccCCcCCCCCEEEEEEeCCCeEEEE--E
Q 043688 173 AGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGK-KNDELANKVMGHASEDIKLTSGSVIEISRLPGYTLQAR--V 249 (292)
Q Consensus 173 ~~~~iRLviv~r~v~~~~l~daf~esl~~rl~~~~~~~-d~~e~l~~f~~~F~~~~~l~KGd~I~f~~~p~g~L~V~--~ 249 (292)
+++++||++++ +++.++++++|++++++|++..+... .+.++|++|.++|++. .++||++|+|+|.|+++|.|+ .
T Consensus 89 ~~k~irl~~i~-~v~g~~~~~a~~e~~~~~~~~~g~~~~~e~~~L~~f~~~F~~~-~~~kG~~i~~~~~p~g~l~is~~~ 166 (222)
T 1eyq_A 89 FEKLIRGSKIR-ELSGPEYSRKVMENCVAHLKSVGTYGDAEAEAMQKFAEAFKPV-NFPPGASVFYRQSPDGILGLSFSP 166 (222)
T ss_dssp SCEEEEEEESS-CEEHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-EECTTCEEEEEEETTTEEEEEEES
T ss_pred CceEEEEEEEe-CCCHHHHHHHHHHHHHHHHhccCccccchHHHHHHHHHHhCCC-CCCCCCEEEEEEcCCCceEEEEEe
Confidence 99999999995 69999999999999999998765432 3567999999999754 599999999999999988775 4
Q ss_pred CCE----EeeEECCHhHHHHHHHHhcCCCCCCHHHHHHHHHhhhhcC
Q 043688 250 MDQ----VVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF 292 (292)
Q Consensus 250 nGk----~~G~I~s~~fa~ALfdiyLGd~PVSp~lK~s~aeglasl~ 292 (292)
||+ ..|+|+|+.||+|||++|||++||||+||++++++|++||
T Consensus 167 ~g~~p~~~~~~I~~~~~~~Al~~i~lG~~pvsp~lK~sl~~~l~~ll 213 (222)
T 1eyq_A 167 DTSIPEKEAALIENKAVSSAVLETMIGEHAVSPDLKRCLAARLPALL 213 (222)
T ss_dssp SSSCCSSCSEEEECHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHH
T ss_pred CCccccccccccCCHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHh
Confidence 888 7899999999999999999999999999999999999885
No 6
>3uep_A YSCQ-C, type III secretion protein; cytosol, protein transport; 2.25A {Yersinia pseudotuberculosis}
Probab=69.72 E-value=7.8 Score=29.88 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=24.1
Q ss_pred CCCCCEEEEEEeCCCeEEEEECCEEee
Q 043688 229 LTSGSVIEISRLPGYTLQARVMDQVVS 255 (292)
Q Consensus 229 l~KGd~I~f~~~p~g~L~V~~nGk~~G 255 (292)
+++||+|.|+...+..+.+++||+.++
T Consensus 40 L~~GdVI~Ld~~~~~~v~i~vng~~i~ 66 (96)
T 3uep_A 40 LEPGSLIDLTTPVDGEVRLLANGRLLG 66 (96)
T ss_dssp CCTTCEEEEEEESSCEEEEEETTEEEE
T ss_pred CCCCCEEEeCCCCCCcEEEEECCEEEE
Confidence 678999999999899999999998654
No 7
>1o6a_A Putative flagellar motor switch protein FLIN; C- terminal PR fragment, structural genomics, joint center for structural JCSG; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=65.07 E-value=10 Score=28.99 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=23.4
Q ss_pred CCCCCEEEEEEeCCCeEEEEECCEEee
Q 043688 229 LTSGSVIEISRLPGYTLQARVMDQVVS 255 (292)
Q Consensus 229 l~KGd~I~f~~~p~g~L~V~~nGk~~G 255 (292)
+++||+|.|+...+..+.+++||+.++
T Consensus 40 L~~GdVI~Ld~~~~~~v~v~v~g~~i~ 66 (96)
T 1o6a_A 40 MIHGSIIELDKLTGEPVDILVNGKLIA 66 (96)
T ss_dssp CCTTCEEEEEEETTCCEEEEETTEEEE
T ss_pred CCCCCEEEeCCCCCCcEEEEECCEEEE
Confidence 678999999998888899999997653
No 8
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=63.80 E-value=7.5 Score=29.04 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=23.8
Q ss_pred cCCCCCEEEEEEeCCCeEEEEECCEEee
Q 043688 228 KLTSGSVIEISRLPGYTLQARVMDQVVS 255 (292)
Q Consensus 228 ~l~KGd~I~f~~~p~g~L~V~~nGk~~G 255 (292)
.+.+||+|.|+..-+..+.+++||+..+
T Consensus 35 ~L~~GdVi~Ld~~~~e~v~i~vng~~~~ 62 (84)
T 1o9y_A 35 RLDAGTILEVTGISPGHATLCHGEQVVA 62 (84)
T ss_dssp TCCTTCEEEECSSCTTEEEEEETTEEEE
T ss_pred cCCCCCEEEeCCCCCCCEEEEECCEEEE
Confidence 3679999999987777899999998654
No 9
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.25 E-value=28 Score=29.37 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=26.8
Q ss_pred cCCCCCEEEEEEeCCCeEEEEECCEEeeEE
Q 043688 228 KLTSGSVIEISRLPGYTLQARVMDQVVSNV 257 (292)
Q Consensus 228 ~l~KGd~I~f~~~p~g~L~V~~nGk~~G~I 257 (292)
.+..||.|.|.+.++|.|...+||...|..
T Consensus 117 ~l~~Gd~ig~~~~~~G~l~~~iNg~~~g~~ 146 (170)
T 2e63_A 117 QLGEGDRVGVERTVAGELRLWVNGRDCGVA 146 (170)
T ss_dssp GCCSSCCEEEEECTTSCEEEEESSCEEEEE
T ss_pred ccCCCCEEEEEEcCCcEEEEEECCccceee
Confidence 356899999999999999999999888874
No 10
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=20.17 E-value=84 Score=23.55 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=20.0
Q ss_pred ccCCcCCCCCEEEEEEeCCCeEEEEE
Q 043688 224 SEDIKLTSGSVIEISRLPGYTLQARV 249 (292)
Q Consensus 224 ~~~~~l~KGd~I~f~~~p~g~L~V~~ 249 (292)
.....+..||.|.|.|.++..-++.+
T Consensus 14 a~~~~f~vGD~L~F~y~~~~hsV~~v 39 (91)
T 1f56_A 14 ARGKSFRAGDVLVFKYIKGQHNVVAV 39 (91)
T ss_dssp CTTCCBCTTCEEEEECCBTTBCEEEE
T ss_pred cCCccEeCCCEEEEEccCCCCeEEEE
Confidence 34557889999999999976655555
No 11
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=20.11 E-value=83 Score=23.79 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=19.7
Q ss_pred ccCCcCCCCCEEEEEEeCCCeEEEEE
Q 043688 224 SEDIKLTSGSVIEISRLPGYTLQARV 249 (292)
Q Consensus 224 ~~~~~l~KGd~I~f~~~p~g~L~V~~ 249 (292)
.....+..||.|.|.|.++..-++.+
T Consensus 19 a~~~~f~vGD~L~F~y~~~~hsV~~v 44 (96)
T 2cbp_A 19 PKGKRFRAGDILLFNYNPSMHNVVVV 44 (96)
T ss_dssp TTTCCBCTTCEEEEECCTTTCCEEEE
T ss_pred ccCceEcCCCEEEEEecCCCCEEEEE
Confidence 34567899999999999876555554
Done!