BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043692
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 81/152 (53%), Gaps = 17/152 (11%)
Query: 51 MIGNYYPYCPQPDLTVGIPCHTNPGALAILLQDHHGGLQCNCGDNWVDVKPVPGALVVDI 110
M NYYP CPQP+L +G+ HT+ AL +L + GLQ WV K VP ++V+ I
Sbjct: 212 MKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHI 271
Query: 111 GDVLKPKSNG--YNVDHRALANSSREAQVSAVVFFRLGYRDRFPCPTRQFAMPIRLLGPF 168
GD L+ SNG ++ HR L N + ++S VF +D+ +L P
Sbjct: 272 GDTLEILSNGKYKSILHRGLVNKEK-VRISWAVFCE-PPKDKI------------VLKPL 317
Query: 169 PELISPEKPARFRQFTHADYI-NRFYTKQLDE 199
PE++S E PA+F T A +I ++ + K+ +E
Sbjct: 318 PEMVSVESPAKFPPRTFAQHIEHKLFGKEQEE 349
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 81/152 (53%), Gaps = 17/152 (11%)
Query: 51 MIGNYYPYCPQPDLTVGIPCHTNPGALAILLQDHHGGLQCNCGDNWVDVKPVPGALVVDI 110
M NYYP CPQP+L +G+ HT+ AL +L + GLQ WV K VP ++V+ I
Sbjct: 211 MKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHI 270
Query: 111 GDVLKPKSNG--YNVDHRALANSSREAQVSAVVFFRLGYRDRFPCPTRQFAMPIRLLGPF 168
GD L+ SNG ++ HR L N + ++S VF +D+ +L P
Sbjct: 271 GDTLEILSNGKYKSILHRGLVNKEK-VRISWAVFCE-PPKDKI------------VLKPL 316
Query: 169 PELISPEKPARFRQFTHADYI-NRFYTKQLDE 199
PE++S E PA+F T A +I ++ + K+ +E
Sbjct: 317 PEMVSVESPAKFPPRTFAQHIEHKLFGKEQEE 348
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 78/149 (52%), Gaps = 17/149 (11%)
Query: 54 NYYPYCPQPDLTVGIPCHTNPGALAILLQDHHGGLQCNCGDNWVDVKPVPGALVVDIGDV 113
NYYP CPQP+L +G+ HT+ AL +L + GLQ WV K VP ++V IGD
Sbjct: 215 NYYPKCPQPELALGVEAHTDVSALTFILHNXVPGLQLFYEGKWVTAKCVPDSIVXHIGDT 274
Query: 114 LKPKSNG--YNVDHRALANSSREAQVSAVVFFRLGYRDRFPCPTRQFAMPIRLLGPFPEL 171
L+ SNG ++ HR L N + ++S VF C + + +L P PE
Sbjct: 275 LEILSNGKYKSILHRGLVNKEK-VRISWAVF----------CEPPKDKI---VLKPLPEX 320
Query: 172 ISPEKPARFRQFTHADYI-NRFYTKQLDE 199
+S E PA+F T A +I ++ + K+ +E
Sbjct: 321 VSVESPAKFPPRTFAQHIEHKLFGKEQEE 349
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 56 YPYCPQPDLTVGIPCHTNPGALAILLQDHH-GGLQCNCGDNWVDVKPVPGALVVDIGDVL 114
YP CP+PDL G+ HT+ G + +L QD GLQ W+DV P ++VV++GD L
Sbjct: 162 YPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQL 221
Query: 115 KPKSNG--YNVDHRALANSSREAQVSAVVFFRLG 146
+ +NG +V HR +A A+ S F+ G
Sbjct: 222 EVITNGKYKSVXHRVIAQKDG-ARXSLASFYNPG 254
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 55 YYPYCPQPDLTVGIPCHTNPGALAILLQDHHGGLQCNCGDN-WVDVKPVPGALVVDIGDV 113
+YP P+ V H + + +LL GGL+ D W+ + P PG LV++IGD
Sbjct: 175 HYPPIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDX 234
Query: 114 LKPKSN 119
L+ +N
Sbjct: 235 LERLTN 240
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 70 CHTNPGALAILLQDHHGGLQCNCGD-NWVDVKPVPGALVVDIGDVLKPKSNGY--NVDHR 126
H + + +L + GLQ D +W+DV G ++++IGD L+ S+GY + HR
Sbjct: 173 AHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHR 232
Query: 127 AL 128
+
Sbjct: 233 VI 234
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.142 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,387,061
Number of Sequences: 62578
Number of extensions: 241393
Number of successful extensions: 307
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 293
Number of HSP's gapped (non-prelim): 6
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)