Citrus Sinensis ID: 043694

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MLMLQTVQLYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGTQESYNLWKDGKGRKLMDPSLDDTHSSWKLLTCLQIALLCVQENSND
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEccccccccccccccccccccccHHHHccccccccccccccccHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEHHcHHHccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccEcccccHHHEEEcccccEEEccccccEEcccccEEccccEEEEcccHHHHHHccccEEHccHHHcccccHHHHHHHHHHEHHEEcccccc
Coil and Loop (DISEMBL)
MLMLQTVQLYLYLIfdvdpirrFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDdleantnrivgtqesynlwkdgkgrklmdpslddthsSWKLLTCLQIALLCVQENSND
Flexible Loop (DISEMBL)
MLMLQTVQLYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVkddleantnrivgtqesynlwkdgkgRKLMDPSLDDTHSSWKLLTCLQIALLCVQENSND
Low Complexity Region (SEG)
MLMLQTVQLYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGTQESYNLWKDGKGRKLMDPSLDDTHSSWKLLTCLQIALLCVQENSND
Disordered region (IsUnstruct)
***LQTVQLYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGTQESYNLWKDGKGRKL****LDDTHSSWKLLTCLQIALLCV******
Disordered Region (DISOPRED)
*LMLQTVQLYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGTQESYNLWKDGKGRKLMDPSLDDTHSSWKLLTCLQIALLCVQENS**
Disordered Region (DISEMBL)
MLMLQTVQLYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGTQESYNLWKDGKGRKLMDPSLDDTHSSWKLLTCLQIALLCVQENSND
Disordered Region (DISPRO)
**MLQTVQLYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGTQESYNLWKDGKGRKLMDPSLDDTHSSWKLLTCLQIALLCVQEN***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLMLQTVQLYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGTQESYNLWKDGKGRKLMDPSLDDTHSSWKLLTCLQIALLCVQENSND
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
Q9LW83	850	G-type lectin S-receptor-	yes	no	0.908	0.151	0.384	3e-28
Q9SXB8	842	G-type lectin S-receptor-	no	no	0.936	0.157	0.379	5e-28
O64793	818	G-type lectin S-receptor-	no	no	0.908	0.157	0.401	1e-27
O65479	666	Putative cysteine-rich re	no	no	0.908	0.193	0.359	1e-26
Q9ZR08	852	G-type lectin S-receptor-	no	no	0.908	0.151	0.377	4e-26
Q9SXB4	820	G-type lectin S-receptor-	no	no	0.908	0.157	0.404	4e-26
Q9SXB5	820	G-type lectin S-receptor-	no	no	0.908	0.157	0.387	2e-25
Q9LDQ3	669	Putative cysteine-rich re	no	no	0.908	0.192	0.353	3e-25
O65482	830	Putative cysteine-rich re	no	no	0.908	0.155	0.353	4e-25
Q8GWJ7	645	Cysteine-rich receptor-li	no	no	0.901	0.198	0.348	1e-24

>sp|Q9LW83|CE101_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase CES101 OS=Arabidopsis thaliana GN=CES101 PE=2 SV=2

 Score =  123 bits (309), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 70/182 (38%), Positives = 102/182 (56%), Gaps = 53/182 (29%)

Query: 12  YLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSK 71
           Y +FD  P+R+ +LDWK    I++GI QGLLYL +YS+L VIH+D+KA NILLDED+  K
Sbjct: 610 YFLFD--PLRKIVLDWKLRFRIMEGIIQGLLYLHKYSRLKVIHRDIKAGNILLDEDMNPK 667

Query: 72  ISDFGLARIFVKDDLEANTNRIVGT----------------------------------- 96
           ISDFG+ARIF   + +ANT R+ GT                                   
Sbjct: 668 ISDFGMARIFGAQESKANTKRVAGTFGYMSPEYFREGLFSAKSDVFSFGVLMLEIICGRK 727

Query: 97  QESYN---------------LWKDGKGRKLMDPSLDDTH-SSWKLLTCLQIALLCVQENS 140
             S++               L+K+ + R+++DPSL D+   + ++L C+Q+ALLCVQ+N+
Sbjct: 728 NNSFHHDSEGPLNLIVHVWNLFKENRVREVIDPSLGDSAVENPQVLRCVQVALLCVQQNA 787

Query: 141 ND 142
           +D
Sbjct: 788 DD 789

Promotes the expression of genes involved in photosynthesis at least in dedifferentiated calli.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9SXB8|Y1133_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 OS=Arabidopsis thaliana GN=At1g11330 PE=1 SV=3

 Score =  122 bits (307), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 71/187 (37%), Positives = 98/187 (52%), Gaps = 54/187 (28%)

Query: 5   QTVQLYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL 64
           +++  YL+     DP+++ ILDWKT  +I++GI +GLLYL   S+L +IH+DLKASNILL
Sbjct: 603 KSLDAYLF-----DPMKQKILDWKTRFNIMEGICRGLLYLHRDSRLKIIHRDLKASNILL 657

Query: 65  DEDLKSKISDFGLARIFVKDDLEANTNRIVGT---------------------------- 96
           DE+L  KISDFGLARIF  ++ EANT R+VGT                            
Sbjct: 658 DENLNPKISDFGLARIFRANEDEANTRRVVGTYGYMSPEYAMEGFFSEKSDVFSLGVIFL 717

Query: 97  ---------------------QESYNLWKDGKGRKLMDPSLDDTHSSWKLLTCLQIALLC 135
                                  ++ LW DG+   L DP++ D     ++  C+ I LLC
Sbjct: 718 EIISGRRNSSSHKEENNLNLLAYAWKLWNDGEAASLADPAVFDKCFEKEIEKCVHIGLLC 777

Query: 136 VQENSND 142
           VQE +ND
Sbjct: 778 VQEVAND 784

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O64793|Y1675_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 OS=Arabidopsis thaliana GN=At1g67520 PE=2 SV=3

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/182 (40%), Positives = 100/182 (54%), Gaps = 53/182 (29%)

Query: 12  YLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSK 71
           Y +FD  P+R+ +LDW     I++GI QGLLYL +YS+L VIH+D+KASNILLDED+  K
Sbjct: 579 YFLFD--PLRKNVLDWTLRFRIMEGIIQGLLYLHKYSRLKVIHRDIKASNILLDEDMNPK 636

Query: 72  ISDFGLARIFVKDDLEANTNRIVGT----------------------------------- 96
           ISDFGLARIF  ++  ANT R+ GT                                   
Sbjct: 637 ISDFGLARIFGAEETRANTKRVAGTFGYMSPEYFREGLFSAKSDVFSFGVLMLEIICGRK 696

Query: 97  QESY---------------NLWKDGKGRKLMDPSLDDTHSSW-KLLTCLQIALLCVQENS 140
             S+               NL+K+ K R+++D SL D+   + ++L C+Q+ALLCVQEN+
Sbjct: 697 NNSFHHDLEGPLNLIVHVWNLFKENKIREVIDLSLRDSALDYPQVLRCVQVALLCVQENA 756

Query: 141 ND 142
            D
Sbjct: 757 ED 758

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O65479|CRK20_ARATH Putative cysteine-rich receptor-like protein kinase 20 OS=Arabidopsis thaliana GN=CRK20 PE=2 SV=2

 Score =  118 bits (295), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 65/181 (35%), Positives = 90/181 (49%), Gaps = 52/181 (28%)

Query: 12  YLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSK 71
           Y +FD  P  +  LDW     II GI +G+LYL + S+L +IH+DLKA NILLD D+  K
Sbjct: 427 YFLFD--PTMQGQLDWSRRYKIIGGIARGILYLHQDSRLTIIHRDLKAGNILLDADMNPK 484

Query: 72  ISDFGLARIFVKDDLEANTNRIVGT----------------------------------- 96
           ++DFG+ARIF  D  EANT R+VGT                                   
Sbjct: 485 VADFGMARIFGMDQTEANTRRVVGTYGYMAPEYAMYGKFSMKSDVYSFGVLVLEIVSGMK 544

Query: 97  ---------------QESYNLWKDGKGRKLMDPSLDDTHSSWKLLTCLQIALLCVQENSN 141
                            ++ LW +G   +L+DPS  D + + ++  C+ IALLCVQE++N
Sbjct: 545 NSSLDQMDGSISNLVTYTWRLWSNGSPSELVDPSFGDNYQTSEITRCIHIALLCVQEDAN 604

Query: 142 D 142
           D
Sbjct: 605 D 605

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9ZR08|Y4230_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 OS=Arabidopsis thaliana GN=At4g03230 PE=3 SV=3

 Score =  116 bits (291), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 68/180 (37%), Positives = 92/180 (51%), Gaps = 51/180 (28%)

Query: 12  YLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSK 71
           + IFD    +R  LDWK   +II GI +GLLYL + S+L +IH+DLK SNILLDE++  K
Sbjct: 615 FFIFDRKLCQR--LDWKMRCNIILGIARGLLYLHQDSRLRIIHRDLKTSNILLDEEMNPK 672

Query: 72  ISDFGLARIFVKDDLEANTNRIVGTQ---------------------------------- 97
           ISDFGLARIF   +  ANTNR+VGT                                   
Sbjct: 673 ISDFGLARIFGGSETSANTNRVVGTYGYMSPEYALEGLFSFKSDVFSFGVVVIETISGKR 732

Query: 98  ---------------ESYNLWKDGKGRKLMDPSLDDTHSSWKLLTCLQIALLCVQENSND 142
                           +++LWK  +G +L+D +L ++  +   L CL + LLCVQE+ ND
Sbjct: 733 NTGFHEPEKSLSLLGHAWDLWKAERGIELLDQALQESCETEGFLKCLNVGLLCVQEDPND 792

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SXB4|Y1130_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 OS=Arabidopsis thaliana GN=At1g11300 PE=2 SV=1

 Score =  116 bits (290), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 70/173 (40%), Positives = 94/173 (54%), Gaps = 44/173 (25%)

Query: 12  YLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSK 71
           Y +FD    R  +LDWKT  +II GI +GLLYL   S+L +IH+DLKASNILLDE+L  K
Sbjct: 592 YYLFDSR--RAKLLDWKTRFNIINGICRGLLYLHRDSRLRIIHRDLKASNILLDENLIPK 649

Query: 72  ISDFGLARIFVKDDLEANTNRIVGT---------------QES----------------- 99
           ISDFGLARIF  ++ EANT R+VGT               ++S                 
Sbjct: 650 ISDFGLARIFPGNEDEANTRRVVGTYGYMAPEYAMGGLFSEKSDVFSLGVILLEIISGRR 709

Query: 100 ----------YNLWKDGKGRKLMDPSLDDTHSSWKLLTCLQIALLCVQENSND 142
                     +++W +G+   L+DP + D     ++  C+ I LLCVQE +ND
Sbjct: 710 NSNSTLLAYVWSIWNEGEINSLVDPEIFDLLFEKEIHKCIHIGLLCVQEAAND 762

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SXB5|Y1135_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g11305 OS=Arabidopsis thaliana GN=At1g11305 PE=2 SV=1

 Score =  114 bits (284), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/173 (38%), Positives = 90/173 (52%), Gaps = 44/173 (25%)

Query: 12  YLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSK 71
           + IFD  P    +LDW T   II GI +GLLYL   S+L +IH+DLKASNILLDE+L  K
Sbjct: 592 FYIFD--PREAKLLDWNTRFEIINGICRGLLYLHRDSRLRIIHRDLKASNILLDENLIPK 649

Query: 72  ISDFGLARIFVKDDLEANTNRIVGT----------------------------------- 96
           ISDFGLARIF  ++ EANT R+VGT                                   
Sbjct: 650 ISDFGLARIFPGNEDEANTRRVVGTYGYMAPEYAMGGLFSEKSDVFSLGVILLEIISGRR 709

Query: 97  -------QESYNLWKDGKGRKLMDPSLDDTHSSWKLLTCLQIALLCVQENSND 142
                     +++W +G+   ++DP + D     ++  C+ IALLCVQ+ +ND
Sbjct: 710 NSHSTLLAHVWSIWNEGEINGMVDPEIFDQLFEKEIRKCVHIALLCVQDAAND 762

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LDQ3|CRK35_ARATH Putative cysteine-rich receptor-like protein kinase 35 OS=Arabidopsis thaliana GN=CRK35 PE=3 SV=3

 Score =  114 bits (284), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/181 (35%), Positives = 92/181 (50%), Gaps = 52/181 (28%)

Query: 12  YLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSK 71
           Y +FD  P ++  LDW    +II GI +G+LYL + S+L +IH+DLKASNILLD D+  K
Sbjct: 428 YFLFD--PAKQGELDWTRRYNIIGGIARGILYLHQDSRLTIIHRDLKASNILLDADMNPK 485

Query: 72  ISDFGLARIFVKDDLEANTNRIVGT----------------------------------- 96
           I+DFG+ARIF  D  +ANT RI GT                                   
Sbjct: 486 IADFGMARIFGVDQSQANTRRIAGTFGYMSPEYAMRGHFSMKSDVYSFGVLVLEIISGKK 545

Query: 97  ---------------QESYNLWKDGKGRKLMDPSLDDTHSSWKLLTCLQIALLCVQENSN 141
                            ++ LW++G   +L+DP++ +++ S +   C+ IALLCVQE+  
Sbjct: 546 NSSFYNIDDSGSNLVTHAWRLWRNGSPLELVDPTIGESYQSSEATRCIHIALLCVQEDPA 605

Query: 142 D 142
           D
Sbjct: 606 D 606

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|O65482|CRK23_ARATH Putative cysteine-rich receptor-like protein kinase 23 OS=Arabidopsis thaliana GN=CRK23 PE=2 SV=1

 Score =  113 bits (282), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 64/181 (35%), Positives = 87/181 (48%), Gaps = 52/181 (28%)

Query: 12  YLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSK 71
           Y +FD    R+  LDW     II GI +G+LYL + S+L +IH+DLKA NILLD D+  K
Sbjct: 591 YFLFDTTMKRQ--LDWTRRYKIIGGIARGILYLHQDSRLTIIHRDLKAGNILLDADMNPK 648

Query: 72  ISDFGLARIFVKDDLEANTNRIVGT----------------------------------- 96
           ++DFG+ARIF  D  EANT R+VGT                                   
Sbjct: 649 VADFGMARIFGMDQTEANTRRVVGTYGYMAPEYAMYGQFSMKSDVYSFGVLVFEIISGMK 708

Query: 97  ---------------QESYNLWKDGKGRKLMDPSLDDTHSSWKLLTCLQIALLCVQENSN 141
                            ++ LW +G    L+DPS  D + +  +  C+ IALLCVQE+ +
Sbjct: 709 NSSLYQMDDSVSNLVTYTWRLWSNGSQLDLVDPSFGDNYQTHDITRCIHIALLCVQEDVD 768

Query: 142 D 142
           D
Sbjct: 769 D 769

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q8GWJ7|CRK19_ARATH Cysteine-rich receptor-like protein kinase 19 OS=Arabidopsis thaliana GN=CRK19 PE=2 SV=2

 Score =  111 bits (278), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/178 (34%), Positives = 86/178 (48%), Gaps = 50/178 (28%)

Query: 15  FDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISD 74
           F  D   +  LDW     II GI +G+LYL + S+L +IH+DLKA NILLD+D+  KI+D
Sbjct: 410 FLFDSTMKMKLDWTRRYKIIGGIARGILYLHQDSRLTIIHRDLKAGNILLDDDMNPKIAD 469

Query: 75  FGLARIFVKDDLEANTNRIVGT-------------------------------------- 96
           FG+ARIF  D  EA T R+VGT                                      
Sbjct: 470 FGMARIFGMDQTEAMTRRVVGTYGYMSPEYAMYGQFSMKSDVYSFGVLVLEIISGMKNSS 529

Query: 97  ------------QESYNLWKDGKGRKLMDPSLDDTHSSWKLLTCLQIALLCVQENSND 142
                         ++ LW +G   +L+DPS  D + + ++  C+ IALLCVQE++ D
Sbjct: 530 LYQMDESVGNLVTYTWRLWSNGSPSELVDPSFGDNYQTSEITRCIHIALLCVQEDAED 587

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
356558668	909	PREDICTED: uncharacterized protein LOC10	0.880	0.137	0.505	5e-42
224142425	763	predicted protein [Populus trichocarpa]	0.880	0.163	0.528	3e-41
147787796	658	hypothetical protein VITISV_036051 [Viti	0.929	0.200	0.564	3e-40
224142427	327	predicted protein [Populus trichocarpa]	0.936	0.406	0.449	2e-38
224103855	247	predicted protein [Populus trichocarpa]	0.936	0.538	0.454	3e-38
296088199	1130	unnamed protein product [Vitis vinifera]	0.936	0.117	0.465	2e-37
359484769	295	PREDICTED: LOW QUALITY PROTEIN: putative	0.936	0.450	0.497	1e-36
224082290	335	predicted protein [Populus trichocarpa]	0.929	0.394	0.435	3e-36
224142431	332	predicted protein [Populus trichocarpa]	0.929	0.397	0.435	3e-36
359480371	1314	PREDICTED: LOW QUALITY PROTEIN: putative	0.901	0.097	0.5	7e-34

>gi|356558668|ref|XP_003547625.1| PREDICTED: uncharacterized protein LOC100787480 [Glycine max]

 Score =  175 bits (443), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 88/174 (50%), Positives = 112/174 (64%), Gaps = 49/174 (28%)

Query: 18  DPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL 77
           DPIRR++LDW+  I+II+GITQGLLYLQEYS+L +IH+D+KASNILLD ++K KISDFG+
Sbjct: 520 DPIRRYLLDWRKRIYIIEGITQGLLYLQEYSRLTIIHRDIKASNILLDNEMKPKISDFGM 579

Query: 78  ARIFVKDDLEANTNRIVGT----------------------------------------- 96
           ARIF KD+LEANT++IVGT                                         
Sbjct: 580 ARIFRKDELEANTSKIVGTYGYVSPEYAMKGLYSTKSDVYSFGVLLLQIVSGRRTACFYG 639

Query: 97  --------QESYNLWKDGKGRKLMDPSLDDTHSSWKLLTCLQIALLCVQENSND 142
                   + +Y LWK+GKG +  DPSLDD+HS+ KLL C+QIALLCVQE++ND
Sbjct: 640 EHENLNLMEYAYELWKEGKGMEFADPSLDDSHSTCKLLRCMQIALLCVQEDAND 693

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142425|ref|XP_002324558.1| predicted protein [Populus trichocarpa] gi|222865992|gb|EEF03123.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 92/174 (52%), Positives = 108/174 (62%), Gaps = 49/174 (28%)

Query: 18  DPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL 77
           DPIRR++LDWK    II+GITQGLLYLQEYS+L +IH+DLKASNILLD D+K KISDFG+
Sbjct: 531 DPIRRYLLDWKRREEIIEGITQGLLYLQEYSRLTIIHRDLKASNILLDGDMKPKISDFGM 590

Query: 78  ARIFVKDDLEANTNRIVGT----------------------------------------- 96
           ARIF KD+ EANT+R+VGT                                         
Sbjct: 591 ARIFTKDEQEANTSRLVGTYGYVPPEYVRNGVYSIKSDVYSFGIVLLHIISGKKNGSLYG 650

Query: 97  --------QESYNLWKDGKGRKLMDPSLDDTHSSWKLLTCLQIALLCVQENSND 142
                   + +Y LWKDGKG ++MDPSLDDT SS KL+ CLQIALLCVQEN  D
Sbjct: 651 SDETLSLLEYAYELWKDGKGMEIMDPSLDDTLSSCKLIKCLQIALLCVQENPID 704

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787796|emb|CAN60684.1| hypothetical protein VITISV_036051 [Vitis vinifera]

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 87/154 (56%), Positives = 106/154 (68%), Gaps = 22/154 (14%)

Query: 6   TVQLYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD 65
           ++  YL+     DP  + +LDW   IHII+GITQGLLYLQEYS+L +IH+DLKASNILLD
Sbjct: 451 SLDFYLF-----DPEGQVLLDWGKRIHIIEGITQGLLYLQEYSRLRIIHRDLKASNILLD 505

Query: 66  EDLKSKISDFGLARIFVKDDLEANTNRIVGT-----------------QESYNLWKDGKG 108
            ++K KI+DFG+ARIF KD+ EANT RIVGT                  ++Y LWKDGK 
Sbjct: 506 GEMKPKIADFGIARIFQKDENEANTGRIVGTYGYVSPEYVQKGTYSVKSDAYELWKDGKS 565

Query: 109 RKLMDPSLDDTHSSWKLLTCLQIALLCVQENSND 142
            + MDPSLDD  SS KL  C+Q+ALLCVQEN  D
Sbjct: 566 MEFMDPSLDDACSSCKLTRCMQVALLCVQENPAD 599

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142427|ref|XP_002324559.1| predicted protein [Populus trichocarpa] gi|222865993|gb|EEF03124.1| predicted protein [Populus trichocarpa]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/187 (44%), Positives = 112/187 (59%), Gaps = 54/187 (28%)

Query: 5   QTVQLYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL 64
           +++ +Y+Y     DPIRR++LDW+  + II+G+TQGLLYLQEYS   +IH+D+K+SN+LL
Sbjct: 90  KSLDIYIY-----DPIRRYMLDWRKRVQIIEGLTQGLLYLQEYSNFTIIHRDIKSSNVLL 144

Query: 65  DEDLKSKISDFGLARIFVKDDLEANTNRIVGT---------------------------- 96
           DE++  KISDFG+AR+F KD+LEANT+RIVGT                            
Sbjct: 145 DEEMNPKISDFGMARLFRKDELEANTSRIVGTYGYVPPEYVRKGIYSMKYDVYSFGVLLL 204

Query: 97  ---------------------QESYNLWKDGKGRKLMDPSLDDTHSSWKLLTCLQIALLC 135
                                + +Y LWKDG+G +  DPSLDD+ SS KL  CLQ+ALLC
Sbjct: 205 QIISGKKSTCYYGADENWNLLEYAYELWKDGEGVEFFDPSLDDSFSSCKLTRCLQVALLC 264

Query: 136 VQENSND 142
           VQEN  D
Sbjct: 265 VQENPLD 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103855|ref|XP_002334008.1| predicted protein [Populus trichocarpa] gi|222839516|gb|EEE77853.1| predicted protein [Populus trichocarpa]

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/187 (45%), Positives = 111/187 (59%), Gaps = 54/187 (28%)

Query: 5   QTVQLYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL 64
           +++  Y+Y     DPIRR++LDW+  + II+G+TQGLLYLQEYS   +IH+D+K+SNILL
Sbjct: 10  KSLDFYIY-----DPIRRYMLDWRKRVQIIEGLTQGLLYLQEYSNFTIIHRDIKSSNILL 64

Query: 65  DEDLKSKISDFGLARIFVKDDLEANTNRIVGT---------------------------- 96
           DE++  KISDFG+AR+F KD+LEANT+RIVGT                            
Sbjct: 65  DEEMNPKISDFGMARLFRKDELEANTSRIVGTYGYVPPEYVRKGIYSMKYDVYSFGVLLL 124

Query: 97  ---------------------QESYNLWKDGKGRKLMDPSLDDTHSSWKLLTCLQIALLC 135
                                + +Y LWKDG+G +  DPSLDD+ SS KL  CLQ+ALLC
Sbjct: 125 QIISGKRSTCYYGADENWNLLEYAYELWKDGEGVEFFDPSLDDSFSSCKLTRCLQVALLC 184

Query: 136 VQENSND 142
           VQEN  D
Sbjct: 185 VQENPLD 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088199|emb|CBI35714.3| unnamed protein product [Vitis vinifera]

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 87/187 (46%), Positives = 107/187 (57%), Gaps = 54/187 (28%)

Query: 5    QTVQLYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL 64
            +++  YL+     DP  + +LDW   IHII+GITQGLLYLQEYS+L +IH+DLKASNILL
Sbjct: 890  KSLDFYLF-----DPEGQVLLDWGKRIHIIEGITQGLLYLQEYSRLRIIHRDLKASNILL 944

Query: 65   DEDLKSKISDFGLARIFVKDDLEANTNRIVGT---------------------------- 96
            D ++K KI+DFG+ARIF KD+ EANT RIVGT                            
Sbjct: 945  DGEMKPKIADFGIARIFQKDENEANTGRIVGTYGYVSPEYVQKGTYSVKSDVYSFGVLLL 1004

Query: 97   ---------------------QESYNLWKDGKGRKLMDPSLDDTHSSWKLLTCLQIALLC 135
                                 + +Y LWKDGK  + MDPSLDD  SS KL  C+Q+ALLC
Sbjct: 1005 QIISGKKNTCFYGLDQNLHLLEYAYELWKDGKSMEFMDPSLDDACSSCKLTRCMQVALLC 1064

Query: 136  VQENSND 142
            VQEN  D
Sbjct: 1065 VQENPAD 1071

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484769|ref|XP_002263792.2| PREDICTED: LOW QUALITY PROTEIN: putative cysteine-rich receptor-like protein kinase 35-like [Vitis vinifera]

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 108/173 (62%), Gaps = 40/173 (23%)

Query: 5   QTVQLYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL 64
           +++  YL+     DP  + +LDW   IHII+GITQGLLYLQEYS+L +IH+DLKASNILL
Sbjct: 69  KSLDFYLF-----DPEGQVLLDWGKRIHIIEGITQGLLYLQEYSRLRIIHRDLKASNILL 123

Query: 65  DEDLKSKISDFGLARIFVKDDLEANTNRIVGT----------QESYNL------------ 102
           D ++K KI+DFG+ARIF KD+ EANT RIVGT          + +Y++            
Sbjct: 124 DGEMKPKIADFGIARIFQKDENEANTGRIVGTYGYVSPEYVQKGTYSVKSDVYSFGVLLL 183

Query: 103 -------------WKDGKGRKLMDPSLDDTHSSWKLLTCLQIALLCVQENSND 142
                        WKDGK  + MDPSLDD  SS KL  C+Q+ALLCVQEN  D
Sbjct: 184 QIISGKKNTCFYGWKDGKSMEFMDPSLDDACSSCKLTRCMQVALLCVQENPAD 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082290|ref|XP_002335492.1| predicted protein [Populus trichocarpa] gi|222834258|gb|EEE72735.1| predicted protein [Populus trichocarpa]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 81/186 (43%), Positives = 110/186 (59%), Gaps = 54/186 (29%)

Query: 5   QTVQLYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL 64
           +++ LYL+     DPIRR+ LDW   + II+G+TQGLLYLQEYS   +IH+DLK+SNILL
Sbjct: 95  KSLDLYLF-----DPIRRYSLDWSKRVRIIEGVTQGLLYLQEYSNFTIIHRDLKSSNILL 149

Query: 65  DEDLKSKISDFGLARIFVKDDLEANTNRIVGT---------------------------- 96
           D+++  KISDFG+A++F KD  EANT+RIVGT                            
Sbjct: 150 DDEMNPKISDFGMAKLFRKDVYEANTSRIVGTYGYIPPEYARKGIYSIKYDVYSFGVVLL 209

Query: 97  ---------------------QESYNLWKDGKGRKLMDPSLDDTHSSWKLLTCLQIALLC 135
                                + +Y+LWK+G+G + +DP LDD+ S  KLLTC+Q+ALLC
Sbjct: 210 QMISGKTNTRFYSENEDLNLLEYAYDLWKNGRGMEFIDPFLDDSSSPCKLLTCMQVALLC 269

Query: 136 VQENSN 141
           VQEN +
Sbjct: 270 VQENPD 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142431|ref|XP_002324561.1| predicted protein [Populus trichocarpa] gi|222865995|gb|EEF03126.1| predicted protein [Populus trichocarpa]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 81/186 (43%), Positives = 110/186 (59%), Gaps = 54/186 (29%)

Query: 5   QTVQLYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL 64
           +++ LYL+     DPIRR+ LDW   + II+G+TQGLLYLQEYS   +IH+DLK+SNILL
Sbjct: 92  KSLDLYLF-----DPIRRYSLDWSKRVRIIEGVTQGLLYLQEYSNFTIIHRDLKSSNILL 146

Query: 65  DEDLKSKISDFGLARIFVKDDLEANTNRIVGT---------------------------- 96
           D+++  KISDFG+A++F KD  EANT+RIVGT                            
Sbjct: 147 DDEMNPKISDFGMAKLFRKDVYEANTSRIVGTYGYIPPEYARKGIYSIKYDVYSFGVVLL 206

Query: 97  ---------------------QESYNLWKDGKGRKLMDPSLDDTHSSWKLLTCLQIALLC 135
                                + +Y+LWK+G+G + +DP LDD+ S  KLLTC+Q+ALLC
Sbjct: 207 QMISGKTNTRFYSENEDLNLLEYAYDLWKNGRGMEFIDPFLDDSSSPCKLLTCMQVALLC 266

Query: 136 VQENSN 141
           VQEN +
Sbjct: 267 VQENPD 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480371|ref|XP_003632440.1| PREDICTED: LOW QUALITY PROTEIN: putative serine/threonine-protein kinase receptor-like [Vitis vinifera]

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 78/156 (50%), Positives = 99/156 (63%), Gaps = 28/156 (17%)

Query: 15  FDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISD 74
           F  DP  R ILDWK   +II+GI QGLLYL +YS+L +IH+DLKASNILLD DL  KISD
Sbjct: 458 FLFDPAXRKILDWKRRHNIIEGIAQGLLYLHKYSRLRIIHRDLKASNILLDHDLNPKISD 517

Query: 75  FGLARIFVKDDLEANTNRIVGT----------------------------QESYNLWKDG 106
           FG+AR F ++  EANTNRIVGT                            + ++ LWK+G
Sbjct: 518 FGMARTFGRNASEANTNRIVGTYGYMPPEYAMEGIFSVKSDVYSFGVLLLEIAWELWKEG 577

Query: 107 KGRKLMDPSLDDTHSSWKLLTCLQIALLCVQENSND 142
              +L+DP L+D HSS ++L C+ IALLCVQE++ D
Sbjct: 578 TSLQLVDPMLEDFHSSTQMLRCIHIALLCVQESAAD 613

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
TAIR|locus:2093397	850	CES101 "CALLUS EXPRESSION OF R	0.584	0.097	0.588	7.8e-31
TAIR|locus:2123111	669	CRK34 "cysteine-rich RLK (RECE	0.584	0.124	0.552	1.7e-26
TAIR|locus:2141181	850	RK3 "receptor kinase 3" [Arabi	0.556	0.092	0.556	4e-26
TAIR|locus:2121626	830	CRK23 "cysteine-rich RLK (RECE	0.584	0.1	0.541	4.5e-26
TAIR|locus:2115728	675	CRK25 "cysteine-rich RLK (RECE	0.584	0.122	0.576	1.4e-25
TAIR|locus:2123056	656	CRK32 "cysteine-rich RLK (RECE	0.563	0.121	0.575	2.1e-25
TAIR|locus:2200151	830	SD1-13 "S-domain-1 13" [Arabid	0.556	0.095	0.607	2.2e-25
UNIPROTKB|O49974	848	KIK1 "Serine/threonine-protein	0.577	0.096	0.585	6.4e-25
TAIR|locus:2121636	659	CRK7 "cysteine-rich RLK (RECEP	0.577	0.124	0.560	1.6e-24
TAIR|locus:2197729	805	SD1-29 "S-domain-1 29" [Arabid	0.584	0.103	0.578	1.9e-24

TAIR|locus:2093397 CES101 "CALLUS EXPRESSION OF RBCS 101" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 7.8e-31, Sum P(2) = 7.8e-31
 Identities = 50/85 (58%), Positives = 65/85 (76%)

Query:    12 YLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSK 71
             Y +FD  P+R+ +LDWK    I++GI QGLLYL +YS+L VIH+D+KA NILLDED+  K
Sbjct:   610 YFLFD--PLRKIVLDWKLRFRIMEGIIQGLLYLHKYSRLKVIHRDIKAGNILLDEDMNPK 667

Query:    72 ISDFGLARIFVKDDLEANTNRIVGT 96
             ISDFG+ARIF   + +ANT R+ GT
Sbjct:   668 ISDFGMARIFGAQESKANTKRVAGT 692

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA;ISS

TAIR|locus:2123111 CRK34 "cysteine-rich RLK (RECEPTOR-like protein kinase) 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
 Identities = 47/85 (55%), Positives = 61/85 (71%)

Query:    12 YLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSK 71
             Y +FD  P ++  LDW    +II GI +G+LYL + S+L +IH+DLKASNILLD D+  K
Sbjct:   428 YFLFD--PAKQGELDWTRRYNIIGGIARGILYLHQDSRLTIIHRDLKASNILLDADMNPK 485

Query:    72 ISDFGLARIFVKDDLEANTNRIVGT 96
             I+DFG+ARIF  D  +ANT RI GT
Sbjct:   486 IADFGMARIFGVDQSQANTRRIAGT 510

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2141181 RK3 "receptor kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
 Identities = 44/79 (55%), Positives = 58/79 (73%)

Query:    18 DPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL 77
             D  R   L+W+    II GI +GLLYL + S+  +IH+DLKASNILLD+ +  KISDFG+
Sbjct:   613 DKSRNSKLNWQMRFDIINGIARGLLYLHQDSRFRIIHRDLKASNILLDKYMTPKISDFGM 672

Query:    78 ARIFVKDDLEANTNRIVGT 96
             ARIF +D+ EANT ++VGT
Sbjct:   673 ARIFGRDETEANTRKVVGT 691

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0048544 "recognition of pollen" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2121626 CRK23 "cysteine-rich RLK (RECEPTOR-like protein kinase) 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.5e-26, Sum P(2) = 4.5e-26
 Identities = 46/85 (54%), Positives = 59/85 (69%)

Query:    12 YLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSK 71
             Y +FD    R+  LDW     II GI +G+LYL + S+L +IH+DLKA NILLD D+  K
Sbjct:   591 YFLFDTTMKRQ--LDWTRRYKIIGGIARGILYLHQDSRLTIIHRDLKAGNILLDADMNPK 648

Query:    72 ISDFGLARIFVKDDLEANTNRIVGT 96
             ++DFG+ARIF  D  EANT R+VGT
Sbjct:   649 VADFGMARIFGMDQTEANTRRVVGT 673

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006952 "defense response" evidence=TAS

TAIR|locus:2115728 CRK25 "cysteine-rich RLK (RECEPTOR-like protein kinase) 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
 Identities = 49/85 (57%), Positives = 63/85 (74%)

Query:    12 YLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSK 71
             Y +FD +  +R +LDW+    II+GI +G+LYL   S+L +IH+DLKASNILLD D+  K
Sbjct:   430 YFLFDNE--KRRVLDWQRRYKIIEGIARGILYLHRDSRLTIIHRDLKASNILLDADMHPK 487

Query:    72 ISDFGLARIFVKDDLEANTNRIVGT 96
             ISDFG+ARIF  D  +ANT RIVGT
Sbjct:   488 ISDFGMARIFGVDQTQANTKRIVGT 512

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2123056 CRK32 "cysteine-rich RLK (RECEPTOR-like protein kinase) 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
 Identities = 46/80 (57%), Positives = 60/80 (75%)

Query:    17 VDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFG 76
             +DP ++  LDWK   +II GIT+GLLYL + S+L +IH+D+KASNILLD D+  KI+DFG
Sbjct:   415 LDPTKKSQLDWKRRYNIIGGITRGLLYLHQDSRLTIIHRDIKASNILLDADMNPKIADFG 474

Query:    77 LARIFVKDDLEANTNRIVGT 96
             +AR F  D  E NT R+VGT
Sbjct:   475 MARNFRVDQTEDNTRRVVGT 494

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2200151 SD1-13 "S-domain-1 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 2.2e-25, Sum P(2) = 2.2e-25
 Identities = 48/79 (60%), Positives = 63/79 (79%)

Query:    18 DPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL 77
             DP+++ +LDWKT  +II GI +GL+YL   S+L +IH+DLKASNILLDE+L  KISDFGL
Sbjct:   599 DPVKQRLLDWKTRFNIIDGICRGLMYLHRDSRLKIIHRDLKASNILLDENLNPKISDFGL 658

Query:    78 ARIFVKDDLEANTNRIVGT 96
             ARIF  ++ E +T R+VGT
Sbjct:   659 ARIFQGNEDEVSTVRVVGT 677

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0048544 "recognition of pollen" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=RCA;IDA

GO:0009637 "response to blue light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

UNIPROTKB|O49974 KIK1 "Serine/threonine-protein kinase" [Zea mays (taxid:4577)]

 Score = 240 (89.5 bits), Expect = 6.4e-25, Sum P(2) = 6.4e-25
 Identities = 48/82 (58%), Positives = 62/82 (75%)

Query:    15 FDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISD 74
             F  +P ++ +LDWK    II+GI +GLLYL   S+L V+H+DLKASNILLD D+K KISD
Sbjct:   614 FLFNPEKQRLLDWKKRFDIIEGIARGLLYLHRDSRLRVVHRDLKASNILLDADMKPKISD 673

Query:    75 FGLARIFVKDDLEANTNRIVGT 96
             FG+AR+F  D  + NTNR+VGT
Sbjct:   674 FGMARMFGGDQNQFNTNRVVGT 695

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2121636 CRK7 "cysteine-rich RLK (RECEPTOR-like protein kinase) 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
 Identities = 46/82 (56%), Positives = 59/82 (71%)

Query:    15 FDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISD 74
             F  DP ++  L W    HII GI +G+LYL + S+L +IH+DLKASNILLD D+  KI+D
Sbjct:   420 FLFDPAKKGQLYWTQRYHIIGGIARGILYLHQDSRLTIIHRDLKASNILLDADMNPKIAD 479

Query:    75 FGLARIFVKDDLEANTNRIVGT 96
             FG+ARIF  D  + NT+RIVGT
Sbjct:   480 FGMARIFGMDQTQQNTSRIVGT 501

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2197729 SD1-29 "S-domain-1 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
 Identities = 48/83 (57%), Positives = 58/83 (69%)

Query:    14 IFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKIS 73
             IF  DP  +F LDW    +IIQGI +GLLYL   S+L VIH+DLK SNILLD+ +  KIS
Sbjct:   571 IFIFDPCLKFELDWPKRFNIIQGIARGLLYLHRDSRLRVIHRDLKVSNILLDDRMNPKIS 630

Query:    74 DFGLARIFVKDDLEANTNRIVGT 96
             DFGLAR+F     + NT R+VGT
Sbjct:   631 DFGLARMFQGTQYQDNTRRVVGT 653

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA;ISS

GO:0048544 "recognition of pollen" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0046777 "protein autophosphorylation" evidence=RCA;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	LOW CONFIDENCE prediction!
3rd Layer	2.7.11	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	142
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	1e-13
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	1e-11
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	4e-11
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	4e-11
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	6e-11
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	1e-10
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	3e-10
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	5e-10
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	5e-10
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	9e-10
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	1e-09
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	1e-09
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	1e-09
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	7e-09
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	7e-09
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	8e-09
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	1e-08
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	1e-08
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	1e-08
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	1e-08
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	2e-08
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	2e-08
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	3e-08
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	3e-08
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	4e-08
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	5e-08
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	5e-08
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	7e-08
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	8e-08
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	9e-08
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	1e-07
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	1e-07
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	1e-07
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	1e-07
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	1e-07
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	2e-07
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	2e-07
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	2e-07
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	2e-07
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	3e-07
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	3e-07
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	4e-07
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	4e-07
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	5e-07
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	5e-07
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	5e-07
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	6e-07
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	6e-07
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	8e-07
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	8e-07
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	9e-07
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	9e-07
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	1e-06
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	1e-06
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	1e-06
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	2e-06
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	2e-06
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	2e-06
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	2e-06
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	2e-06
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	2e-06
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	2e-06
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	2e-06
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	3e-06
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	3e-06
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	3e-06
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	3e-06
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	3e-06
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	3e-06
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	4e-06
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	5e-06
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	5e-06
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	5e-06
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	5e-06
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	6e-06
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	7e-06
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	8e-06
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	9e-06
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	9e-06
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	1e-05
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	1e-05
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	1e-05
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	1e-05
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	1e-05
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	1e-05
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	1e-05
cd05054	337	cd05054, PTKc_VEGFR, Catalytic domain of the Prote	1e-05
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	1e-05
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	1e-05
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	1e-05
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	1e-05
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	2e-05
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	2e-05
cd05116	257	cd05116, PTKc_Syk, Catalytic domain of the Protein	2e-05
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	2e-05
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	2e-05
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	2e-05
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	2e-05
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	2e-05
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	2e-05
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	2e-05
cd05102	338	cd05102, PTKc_VEGFR3, Catalytic domain of the Prot	2e-05
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	2e-05
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	2e-05
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	2e-05
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	2e-05
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	3e-05
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	3e-05
cd05629	377	cd05629, STKc_NDR_like_fungal, Catalytic domain of	3e-05
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	4e-05
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	4e-05
cd05115	257	cd05115, PTKc_Zap-70, Catalytic domain of the Prot	4e-05
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	4e-05
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	4e-05
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	5e-05
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	5e-05
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	5e-05
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	5e-05
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	6e-05
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	6e-05
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	7e-05
cd05103	343	cd05103, PTKc_VEGFR2, Catalytic domain of the Prot	7e-05
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	8e-05
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	8e-05
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	8e-05
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	8e-05
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	8e-05
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	9e-05
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	9e-05
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	9e-05
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	1e-04
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	1e-04
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	1e-04
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	1e-04
cd05104	375	cd05104, PTKc_Kit, Catalytic domain of the Protein	1e-04
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	1e-04
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	1e-04
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	1e-04
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	1e-04
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	1e-04
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	1e-04
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	1e-04
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	1e-04
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	1e-04
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	1e-04
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	2e-04
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	2e-04
cd05599	364	cd05599, STKc_NDR_like, Catalytic domain of Nuclea	2e-04
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	2e-04
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	2e-04
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	2e-04
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	2e-04
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	2e-04
cd05106	374	cd05106, PTKc_CSF-1R, Catalytic domain of the Prot	2e-04
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	2e-04
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	2e-04
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	2e-04
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	2e-04
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	2e-04
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	2e-04
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	2e-04
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	3e-04
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	3e-04
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	3e-04
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	3e-04
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	3e-04
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	3e-04
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	3e-04
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	3e-04
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	3e-04
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	4e-04
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	4e-04
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	4e-04
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	4e-04
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	5e-04
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	5e-04
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	5e-04
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	6e-04
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	6e-04
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	6e-04
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	7e-04
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	7e-04
PTZ00426	340	PTZ00426, PTZ00426, cAMP-dependent protein kinase	7e-04
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	7e-04
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	7e-04
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	8e-04
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	8e-04
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	8e-04
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	9e-04
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	9e-04
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	0.001
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	0.001
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	0.001
PHA03207	392	PHA03207, PHA03207, serine/threonine kinase US3; P	0.001
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	0.001
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	0.001
cd08216	314	cd08216, PK_STRAD, Pseudokinase domain of STE20-re	0.001
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	0.001
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	0.001
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	0.001
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	0.002
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	0.002
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	0.002
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	0.002
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	0.002
cd05598	376	cd05598, STKc_LATS, Catalytic domain of the Protei	0.002
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	0.002
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	0.002
PLN03224	507	PLN03224, PLN03224, probable serine/threonine prot	0.002
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	0.002
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	0.002
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	0.003
cd05087	269	cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of t	0.003
cd05061	288	cd05061, PTKc_InsR, Catalytic domain of the Protei	0.003
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	0.003
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	0.003
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	0.003
cd05626	381	cd05626, STKc_LATS2, Catalytic domain of the Prote	0.003
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	0.003
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	0.004
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	0.004
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	0.004
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	0.004
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	0.004
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	0.004
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	0.004
cd06639	291	cd06639, STKc_myosinIIIB, Catalytic domain of the	0.004
cd05107	401	cd05107, PTKc_PDGFR_beta, Catalytic domain of the	0.004

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 65.0 bits (159), Expect = 1e-13
 Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 13/95 (13%)

Query: 10  YLYLIFD-VDPI-------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASN 61
           +LYL+ +  +         R   L       I   I +GL YL       +IH+DLK  N
Sbjct: 72  HLYLVMEYCEGGDLFDYLSRGGPLSEDEAKKIALQILRGLEYLHSNG---IIHRDLKPEN 128

Query: 62  ILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           ILLDE+   KI+DFGLA+  +K      T   VGT
Sbjct: 129 ILLDENGVVKIADFGLAKKLLKSSSSLTT--FVGT 161

Length = 260

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 59.9 bits (146), Expect = 1e-11
 Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 3/63 (4%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTN 91
             ++ + +GL YL       ++H+D+K SNIL++ D   K++DFGLAR + K +    TN
Sbjct: 104 CYMKQLLEGLQYLHSNG---ILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYTN 160

Query: 92  RIV 94
           R++
Sbjct: 161 RVI 163

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 58.0 bits (141), Expect = 4e-11
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKS-KISDFGLAR 79
               L     + I+  I +GL YL       +IH+DLK  NILLD D    K++DFGL++
Sbjct: 85  NEGKLSEDEILRILLQILEGLEYLHSNG---IIHRDLKPENILLDSDNGKVKLADFGLSK 141

Query: 80  IFVKDDLEANTNRIVGT 96
           +      ++    IVGT
Sbjct: 142 LL--TSDKSLLKTIVGT 156

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 58.3 bits (142), Expect = 4e-11
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I +GL YL       ++H+D+K +NIL+D D   K++DFG A+     +    T  + GT
Sbjct: 110 ILEGLAYLHSNG---IVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGT 166

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 57.9 bits (141), Expect = 6e-11
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           R   L     +     I +G+ YL        IH+DL A N L+ E+L  KISDFGL+R
Sbjct: 96  RPKELSLSDLLSFALQIARGMEYL---ESKNFIHRDLAARNCLVGENLVVKISDFGLSR 151

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 57.2 bits (139), Expect = 1e-10
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           L     +     I +G+ YL        IH+DL A N L+ E+L  KISDFGL+R
Sbjct: 99  LSLSDLLSFALQIARGMEYL---ESKNFIHRDLAARNCLVGENLVVKISDFGLSR 150

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 55.6 bits (135), Expect = 3e-10
 Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I   L YL       +I++DLK  NILLD D   K++DFGLA+    +    NT    GT
Sbjct: 102 IVLALEYLHSLG---IIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNT--FCGT 156

Query: 97  QE 98
            E
Sbjct: 157 PE 158

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 55.3 bits (134), Expect = 5e-10
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 6/67 (8%)

Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEAN 89
            +++ Q + QGL YL E     VIH+D+KA+NIL  +D   K++DFG+A     +D+  +
Sbjct: 102 AVYVYQ-VLQGLAYLHEQG---VIHRDIKAANILTTKDGVVKLADFGVATKL--NDVSKD 155

Query: 90  TNRIVGT 96
              +VGT
Sbjct: 156 DASVVGT 162

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 55.2 bits (134), Expect = 5e-10
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLE 87
                 ++ I   L YL       ++H+DLK  NILLDED   K++DFGLAR     +  
Sbjct: 97  DEARFYLRQILSALEYLHSKG---IVHRDLKPENILLDEDGHVKLADFGLARQLDPGEK- 152

Query: 88  ANTNRIVGT 96
                 VGT
Sbjct: 153 --LTTFVGT 159

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 54.5 bits (132), Expect = 9e-10
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 6/64 (9%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNR 92
           + + + +GL YL       +IH+D+KA+NILL  D + K+ DFGL+            N 
Sbjct: 103 VCKELLKGLEYLHSNG---IIHRDIKAANILLTSDGEVKLIDFGLSAQLSD---TKARNT 156

Query: 93  IVGT 96
           +VGT
Sbjct: 157 MVGT 160

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 54.4 bits (132), Expect = 1e-09
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 3/61 (4%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           L  K  + +   I +G+ YL+  +    +H+DL A N L+ E+L  KISDFGL+R   +D
Sbjct: 99  LTLKDLLQMALQIAKGMEYLESKN---FVHRDLAARNCLVTENLVVKISDFGLSRDIYED 155

Query: 85  D 85
           D
Sbjct: 156 D 156

Length = 258

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 54.1 bits (131), Expect = 1e-09
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR-IFVK 83
           L  K  +     I +G+ YL   +    +H+DL A N L+ EDL  KISDFGL+R ++  
Sbjct: 102 LSLKDLLSFAIQIAKGMEYL---ASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDD 158

Query: 84  DDLEANTNRIV 94
           D     T   +
Sbjct: 159 DYYRKKTGGKL 169

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 54.0 bits (130), Expect = 1e-09
 Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 4/50 (8%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           + +G+ YL+E +    IH+DL A NIL+ EDL  K++DFGLAR+ +K+D+
Sbjct: 113 VAEGMAYLEEQN---SIHRDLAARNILVGEDLVCKVADFGLARL-IKEDV 158

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 52.0 bits (125), Expect = 7e-09
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           +  G+ YL+  +    IH+DL A N+L+ E+   K++DFGLAR+  +D  EA  
Sbjct: 112 VASGMAYLEAQN---YIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEARE 162

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 52.0 bits (125), Expect = 7e-09
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           I +G+ YL        IH+DL A NIL++ +   KISDFGLA++  +D 
Sbjct: 118 ICKGMDYLGSQR---YIHRDLAARNILVESEDLVKISDFGLAKVLPEDK 163

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 51.9 bits (125), Expect = 8e-09
 Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 5/64 (7%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNR 92
           I+    +GL YL    K   IH+D+KA NILL+E+ ++K++DFG++        + NT  
Sbjct: 104 ILYQTLKGLEYLHSNKK---IHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNT-- 158

Query: 93  IVGT 96
           ++GT
Sbjct: 159 VIGT 162

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 3/52 (5%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I +G+ YL+  +    IH+DL A NIL+ E+L  KI+DFGLAR+   D+  A
Sbjct: 112 IAEGMAYLESRN---YIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTA 160

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 20/43 (46%), Positives = 32/43 (74%), Gaps = 3/43 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + +G+ YL+E +    +H+DL A N+L+ EDL +K+SDFGLA+
Sbjct: 111 VCEGMEYLEEKN---FVHRDLAARNVLVSEDLVAKVSDFGLAK 150

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 51.4 bits (123), Expect = 1e-08
 Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 3/52 (5%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I +G+ +++  +    IH+DL+A+NIL+ E L  KI+DFGLAR+   ++  A
Sbjct: 111 IAEGMAFIERKN---YIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTA 159

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTN 91
           +++GI  G+ YL   S++  +H+DL A NIL++ +L  K+SDFGL+R     +    T 
Sbjct: 111 MLRGIASGMKYL---SEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTK 166

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 51.1 bits (122), Expect = 2e-08
 Identities = 25/56 (44%), Positives = 40/56 (71%), Gaps = 4/56 (7%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           +++GI  G+ YL   S +  +H+DL A NIL++ +L  K+SDFGL+R+ ++DD EA
Sbjct: 111 MLRGIASGMKYL---SDMGYVHRDLAARNILVNSNLVCKVSDFGLSRV-LEDDPEA 162

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 51.0 bits (123), Expect = 2e-08
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV 82
            +    +GL YL       ++H+DLK +N+L+  D   K++DFGLAR F 
Sbjct: 107 YMLMTLRGLEYLHSNW---ILHRDLKPNNLLIASDGVLKLADFGLARSFG 153

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 50.6 bits (122), Expect = 3e-08
 Identities = 20/38 (52%), Positives = 25/38 (65%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEAN 89
           VIH+DLK SNIL++ +   KI DFGLAR    D+ E  
Sbjct: 124 VIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEKG 161

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 50.3 bits (121), Expect = 3e-08
 Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 7/69 (10%)

Query: 33  IIQGITQGLLYLQE-----YSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLE 87
           I + +TQ LL L E          V+H+DLK +NI LD +   K+ DFGLA+I   D   
Sbjct: 107 IWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSF 166

Query: 88  ANTNRIVGT 96
           A T   VGT
Sbjct: 167 AKT--YVGT 173

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 50.4 bits (120), Expect = 4e-08
 Identities = 23/58 (39%), Positives = 41/58 (70%), Gaps = 4/58 (6%)

Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           + +++GI  G+ YL + +    +H+DL A NIL++ +L+ K+SDFGL+R+ ++DD E 
Sbjct: 110 VGMLRGIAAGMKYLSDMN---YVHRDLAARNILVNSNLECKVSDFGLSRV-LEDDPEG 163

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 49.9 bits (119), Expect = 5e-08
 Identities = 24/53 (45%), Positives = 38/53 (71%), Gaps = 4/53 (7%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           +++GI  G+ YL E +    +H+DL A NIL++ +L  K+SDFGL+R F++DD
Sbjct: 111 MLRGIAAGMKYLSEMN---YVHRDLAARNILVNSNLVCKVSDFGLSR-FLEDD 159

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 6/65 (9%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV---KDDLEAN 89
           +++ +  GL Y+   +K  ++H+D+KA+NIL+ +D   K++DFGLAR F           
Sbjct: 124 VMKMLLNGLYYIH-RNK--ILHRDMKAANILITKDGILKLADFGLARAFSLSKNSKPNRY 180

Query: 90  TNRIV 94
           TNR+V
Sbjct: 181 TNRVV 185

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 49.4 bits (118), Expect = 7e-08
 Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 3/48 (6%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
              + + +GL YL  +SK I +H+DLKA N+L+D D   KISDFG+++
Sbjct: 112 FFTEQVLEGLAYL--HSKGI-LHRDLKADNLLVDADGICKISDFGISK 156

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 49.2 bits (117), Expect = 8e-08
 Identities = 22/49 (44%), Positives = 33/49 (67%), Gaps = 3/49 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           I++G+ YL E     ++H+DL A N+L+ E  K KISDFGL+R   ++D
Sbjct: 136 ISRGMQYLAEMK---LVHRDLAARNVLVAEGRKMKISDFGLSRDVYEED 181

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 49.4 bits (118), Expect = 9e-08
 Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 3/44 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           I +GL Y+       V+H+DLK SNIL++E+   KI DFGLARI
Sbjct: 117 ILRGLKYVHSAG---VVHRDLKPSNILINENCDLKICDFGLARI 157

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 19/28 (67%), Positives = 24/28 (85%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLAR 79
           VIH+DLK SNILL+ D + K++DFGLAR
Sbjct: 128 VIHRDLKPSNILLNSDCRVKLADFGLAR 155

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 17/42 (40%), Positives = 31/42 (73%)

Query: 53  IHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIV 94
           +H+D+K SNILL+   + K++DFGLAR++  ++    TN+++
Sbjct: 138 LHRDIKCSNILLNNKGQIKLADFGLARLYNSEESRPYTNKVI 179

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 48.6 bits (117), Expect = 1e-07
 Identities = 16/30 (53%), Positives = 23/30 (76%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIF 81
           ++H+DLK  NIL++ D   K++DFGLAR F
Sbjct: 119 ILHRDLKPQNILINRDGVLKLADFGLARAF 148

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 20  IRRF-ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           IR++  LD K        I   L YL  +SK I IH+DLK  NILLD+D+  KI+DFG A
Sbjct: 93  IRKYGSLDEKCTRFYAAEILLALEYL--HSKGI-IHRDLKPENILLDKDMHIKITDFGTA 149

Query: 79  RIFVKDDLEANTN 91
           ++   +    +  
Sbjct: 150 KVLDPNSSPESNK 162

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 6/65 (9%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNR 92
           I   + +GL YL  + K  +IH+D+K SNIL++   + K+ DFG++   V + L A T  
Sbjct: 105 IAVAVLKGLTYL--HEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLV-NSL-AKTF- 159

Query: 93  IVGTQ 97
            VGT 
Sbjct: 160 -VGTS 163

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 47.9 bits (115), Expect = 2e-07
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 11/73 (15%)

Query: 24  ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVK 83
           ILDW      +Q +   L YL  +S+ I +H+D+K  NI L  +   K+ DFG++++   
Sbjct: 105 ILDW-----FVQ-LCLALKYL--HSRKI-LHRDIKPQNIFLTSNGLVKLGDFGISKVLSS 155

Query: 84  DDLEANTNRIVGT 96
               A T  +VGT
Sbjct: 156 TVDLAKT--VVGT 166

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 48.0 bits (114), Expect = 2e-07
 Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 3/44 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           + +G+ YL E  KL+  H+DL A NIL+ ED  +K+SDFGLAR+
Sbjct: 109 VAEGMEYL-ESKKLV--HRDLAARNILVSEDGVAKVSDFGLARV 149

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 4/61 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I +GL YL  ++K  +IH+D+K SN+L++   + KI+DFG++++   ++     N  VGT
Sbjct: 108 ILKGLDYL--HTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVL--ENTLDQCNTFVGT 163

Query: 97  Q 97
            
Sbjct: 164 V 164

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I   L YL       +IH+D+K  NILLDE     I+DF +A     D     T    GT
Sbjct: 109 IVLALEYLHSKG---IIHRDIKPDNILLDEQGHVHITDFNIATKVTPD---TLTTSTSGT 162

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 47.9 bits (114), Expect = 3e-07
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 7/67 (10%)

Query: 29  TCIH---IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR-IFVKD 84
           +C     I + +  G+ YL E      +H+DL   N L+ E++  KI+DFGL+R I+  D
Sbjct: 128 SCTEQLCIAKQVAAGMAYLSERK---FVHRDLATRNCLVGENMVVKIADFGLSRNIYSAD 184

Query: 85  DLEANTN 91
             +A+ N
Sbjct: 185 YYKASEN 191

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 24  ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVK 83
            LD      +++ + +GL YL    +   IH+D+KA NILL ED   KI+DFG++     
Sbjct: 98  GLDEAIIATVLKEVLKGLEYLHSNGQ---IHRDIKAGNILLGEDGSVKIADFGVSASLAD 154

Query: 84  --DDLEANTNRIVGT 96
             D         VGT
Sbjct: 155 GGDRTRKVRKTFVGT 169

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 11/79 (13%)

Query: 11  LYLIFD--------VDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNI 62
           LYL+F+        +   R+  L        +  + QGL +   +    ++H+DLK  N+
Sbjct: 73  LYLVFEFMDTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHG---ILHRDLKPENL 129

Query: 63  LLDEDLKSKISDFGLARIF 81
           L++ +   K++DFGLAR F
Sbjct: 130 LINTEGVLKLADFGLARSF 148

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 47.1 bits (112), Expect = 4e-07
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           R+  L  +  + +   + + + YL+       IH+DL A N L+ ED   K+SDFGLAR 
Sbjct: 93  RKGKLGTEWLLDMCSDVCEAMEYLESNG---FIHRDLAARNCLVGEDNVVKVSDFGLAR- 148

Query: 81  FVKDD 85
           +V DD
Sbjct: 149 YVLDD 153

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 12/83 (14%)

Query: 8   QLYLYLIFD-VD-PIRRFI-------LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLK 58
           +L L L+F+ VD  +  ++       L  +T   +++ + +G+ +L  +    ++H+DLK
Sbjct: 78  ELKLTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHR---IVHRDLK 134

Query: 59  ASNILLDEDLKSKISDFGLARIF 81
             NIL+  D + KI+DFGLARI+
Sbjct: 135 PQNILVTSDGQVKIADFGLARIY 157

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 46.7 bits (111), Expect = 5e-07
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I + +L L    +L +I++D+K  NILLD +    ++DFGL++ F+ ++ E       GT
Sbjct: 111 IAEIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEEE-RAYSFCGT 169

Query: 97  QE 98
            E
Sbjct: 170 IE 171

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 46.7 bits (111), Expect = 5e-07
 Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 15/102 (14%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNR 92
           I  G  QGL YL  + +   IH+D+KA NILL E    K++DFG A +       +  N 
Sbjct: 120 ICHGALQGLAYLHSHER---IHRDIKAGNILLTEPGTVKLADFGSASLV------SPANS 170

Query: 93  IVGTQESYNLWKDGKGRKLMDP-SLDDTHSSWKL-LTCLQIA 132
            VGT      W   +    MD    D     W L +TC+++A
Sbjct: 171 FVGTP----YWMAPEVILAMDEGQYDGKVDVWSLGITCIELA 208

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 46.9 bits (111), Expect = 6e-07
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 20/101 (19%)

Query: 7   VQLY--------LYLIFDV-------DPIR--RFILDWKTCIHIIQGITQGLLYLQEYSK 49
           VQLY        + L+F+        D +R  R     +T + +   + +G+ YL+  + 
Sbjct: 62  VQLYGVCTERSPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSN- 120

Query: 50  LIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
             VIH+DL A N L+ E+   K+SDFG+ R  + D   ++T
Sbjct: 121 --VIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSST 159

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 46.5 bits (111), Expect = 6e-07
 Identities = 16/43 (37%), Positives = 31/43 (72%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIV 94
           ++H+DLK +N+L+  D   KI+DFGLAR+F +++    ++++ 
Sbjct: 120 IMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVA 162

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 46.2 bits (109), Expect = 8e-07
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 9/70 (12%)

Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           + +L+W  C+ I     +G++YL+E     ++H+DL A N+L+      KI+DFGLAR+ 
Sbjct: 109 QLLLNW--CVQI----AKGMMYLEERR---LVHRDLAARNVLVKSPNHVKITDFGLARLL 159

Query: 82  VKDDLEANTN 91
             D+ E N +
Sbjct: 160 EGDEKEYNAD 169

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 46.2 bits (109), Expect = 8e-07
 Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 3/52 (5%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I +G+ Y++  +    IH+DL+A+N+L+ E L  KI+DFGLAR+   ++  A
Sbjct: 112 IAEGMAYIERKN---YIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTA 160

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 46.3 bits (110), Expect = 9e-07
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 9/70 (12%)

Query: 27  WKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           W+  I I      GL +L  +SK I +H+D+K+ N+ LD     KI D G+A++   +  
Sbjct: 104 WRFFIQI----LLGLAHL--HSKKI-LHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTN 156

Query: 87  EANTNRIVGT 96
            ANT  IVGT
Sbjct: 157 FANT--IVGT 164

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 46.2 bits (110), Expect = 9e-07
 Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 28/93 (30%)

Query: 7   VQLYLYLIFDVD---------------------PIRRFILDWKTCIHIIQGITQGLLYLQ 45
           V+ Y Y I D D                     PI   IL       +   I + L YL+
Sbjct: 77  VKCYGYFITDSDVFICMELMSTCLDKLLKRIQGPIPEDILG-----KMTVAIVKALHYLK 131

Query: 46  EYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           E  K  VIH+D+K SNILLD     K+ DFG++
Sbjct: 132 E--KHGVIHRDVKPSNILLDASGNVKLCDFGIS 162

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 9/71 (12%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA------RIFVKDD 85
             I  I   L YL       +IH+DLK  NIL+D +   K++DFGL+      R    +D
Sbjct: 97  IYIAEIVLALEYLHSNG---IIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLND 153

Query: 86  LEANTNRIVGT 96
            E    RIVGT
Sbjct: 154 DEKEDKRIVGT 164

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 7/51 (13%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILL----DEDLKSKISDFGLARIFVK 83
           I  G+ YL       V+H+DLK +NIL+     E    KI D GLAR+F  
Sbjct: 117 ILNGVHYLHSN---WVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNA 164

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           I   I + L YL    KL VIH+D+K SN+L++ + + K+ DFG++
Sbjct: 108 IAVSIVKALEYLHS--KLSVIHRDVKPSNVLINRNGQVKLCDFGIS 151

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 18/29 (62%), Positives = 23/29 (79%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARI 80
           V+H+DLK SN+LL+ +   KI DFGLARI
Sbjct: 127 VLHRDLKPSNLLLNTNCDLKICDFGLARI 155

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 18/28 (64%), Positives = 23/28 (82%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLAR 79
           +IH+DLK SNI ++ED + KI DFGLAR
Sbjct: 139 IIHRDLKPSNIAVNEDCELKILDFGLAR 166

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 3/48 (6%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I++   +GL YL E     VIH+D+K  NILL ++ + K+ DFG++ 
Sbjct: 117 YILRETLRGLAYLHENK---VIHRDIKGQNILLTKNAEVKLVDFGVSA 161

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 23/43 (53%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           I  G+ YL E  + I  H+DL A NILL  D K KI DFGL R
Sbjct: 106 IANGMRYL-ESKRFI--HRDLAARNILLASDDKVKIGDFGLMR 145

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 3/45 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           + +G+ YL E    I +H+D+KA+NIL+D     KI+DFGLAR +
Sbjct: 124 LLEGINYLHE--NHI-LHRDIKAANILIDNQGILKIADFGLARPY 165

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 45.4 bits (107), Expect = 2e-06
 Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 9/66 (13%)

Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           + +L+W  C+ I +G++    YL+E     ++H+DL A N+L+      KI+DFGLAR+ 
Sbjct: 109 QDLLNW--CVQIAKGMS----YLEEVR---LVHRDLAARNVLVKSPNHVKITDFGLARLL 159

Query: 82  VKDDLE 87
             D+ E
Sbjct: 160 DIDETE 165

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 21/97 (21%)

Query: 18  DPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL 77
           D ++   LD      I++ +  GL YL E  K   IH+D+KA+NILL E+   K++DFG 
Sbjct: 88  DLLKPGKLDETYIAFILREVLLGLEYLHEEGK---IHRDIKAANILLSEEGDVKLADFG- 143

Query: 78  ARIFVKDDLEANTNR---IVGT----------QESYN 101
               V   L +  ++    VGT          Q  Y+
Sbjct: 144 ----VSGQLTSTMSKRNTFVGTPFWMAPEVIKQSGYD 176

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 24  ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
            LD    +HI   I  G+ YL   S    +H+DL A N L+ E L  KISDFGL+R
Sbjct: 120 SLDCSDFLHIAIQIAAGMEYL---SSHHFVHRDLAARNCLVGEGLTVKISDFGLSR 172

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 3/49 (6%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           ++  + +GL YL E     +IH+DLK SN+LL +    KI+DFGLAR +
Sbjct: 113 LMLQLLRGLQYLHEN---FIIHRDLKVSNLLLTDKGCLKIADFGLARTY 158

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 45.0 bits (106), Expect = 3e-06
 Identities = 21/52 (40%), Positives = 36/52 (69%), Gaps = 3/52 (5%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I  G+ Y++   ++  IH+DL+A+NIL+ ++L  KI+DFGLAR+   ++  A
Sbjct: 111 IADGMAYIE---RMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTA 159

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 3/40 (7%)

Query: 39  QGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           +GL YL E  K   IH+D+K +NILL ED   K++DFG++
Sbjct: 112 KGLAYLHETGK---IHRDIKGANILLTEDGDVKLADFGVS 148

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 44.9 bits (107), Expect = 3e-06
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 5/64 (7%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNR 92
           + + + QGL YL       VIH+D+K+ NILL +D   K++DFG A    K+  + N+  
Sbjct: 121 VCREVLQGLEYLH---SQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNS-- 175

Query: 93  IVGT 96
           +VGT
Sbjct: 176 VVGT 179

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 44.6 bits (105), Expect = 3e-06
 Identities = 20/52 (38%), Positives = 35/52 (67%), Gaps = 3/52 (5%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I +G+ ++++ +    IH+DL+A+NIL+   L  KI+DFGLAR+   ++  A
Sbjct: 111 IAEGMAFIEQRN---YIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTA 159

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 44.7 bits (105), Expect = 3e-06
 Identities = 20/52 (38%), Positives = 36/52 (69%), Gaps = 3/52 (5%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I  G+ Y++   ++  +H+DL+A+NIL+ E+L  K++DFGLAR+   ++  A
Sbjct: 111 IASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA 159

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 3/43 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + +G+ +L   SK   IH+DL A N+L+ ED   KI+DFGLAR
Sbjct: 141 VARGMEFLA--SKKC-IHRDLAARNVLVTEDHVMKIADFGLAR 180

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 3/43 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + +GL Y+   +   VIH+DLK SN+L++ED + +I DFG+AR
Sbjct: 116 LLRGLKYIHSAN---VIHRDLKPSNLLVNEDCELRIGDFGMAR 155

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 44.2 bits (104), Expect = 5e-06
 Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 15/102 (14%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNR 92
           I  G  QGL YL  ++    IH+D+KA NILL E  + K++DFG A         +  N 
Sbjct: 126 ITHGALQGLAYLHSHNM---IHRDIKAGNILLTEPGQVKLADFGSASK------SSPANS 176

Query: 93  IVGTQESYNLWKDGKGRKLMDP-SLDDTHSSWKL-LTCLQIA 132
            VGT      W   +    MD    D     W L +TC+++A
Sbjct: 177 FVGTP----YWMAPEVILAMDEGQYDGKVDVWSLGITCIELA 214

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 43.8 bits (104), Expect = 5e-06
 Identities = 16/30 (53%), Positives = 23/30 (76%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIF 81
           V+H+DLK  N+L+D +   K++DFGLAR F
Sbjct: 120 VLHRDLKPQNLLIDREGALKLADFGLARAF 149

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 44.3 bits (104), Expect = 5e-06
 Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 15/102 (14%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNR 92
           I  G  QGL YL  ++   +IH+D+KA NILL E  + K++DFG A I       +  N 
Sbjct: 130 ITHGALQGLAYLHSHN---MIHRDIKAGNILLTEPGQVKLADFGSASIA------SPANS 180

Query: 93  IVGTQESYNLWKDGKGRKLMDP-SLDDTHSSWKL-LTCLQIA 132
            VGT      W   +    MD    D     W L +TC+++A
Sbjct: 181 FVGTP----YWMAPEVILAMDEGQYDGKVDVWSLGITCIELA 218

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 43.8 bits (103), Expect = 6e-06
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 11/69 (15%)

Query: 17  VDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFG 76
           +DP R  +L+W  C+ I     +G+ YL+E+    ++H++L A NILL  D   +I+DFG
Sbjct: 106 LDPQR--LLNW--CVQI----AKGMYYLEEHR---MVHRNLAARNILLKSDSIVQIADFG 154

Query: 77  LARIFVKDD 85
           +A +   DD
Sbjct: 155 VADLLYPDD 163

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 43.6 bits (103), Expect = 7e-06
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 3/43 (6%)

Query: 39  QGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           QGL +   +    V+H+DLK  N+L++ +   K++DFGLAR F
Sbjct: 111 QGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAF 150

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 43.4 bits (102), Expect = 8e-06
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 15  FDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISD 74
           FD+  +    L +K  +     + +G+ YL+       IH+DL A N+L+ ED   KI+D
Sbjct: 121 FDITKVPEEQLSFKDLVSCAYQVARGMEYLESRR---CIHRDLAARNVLVTEDNVMKIAD 177

Query: 75  FGLAR 79
           FGLAR
Sbjct: 178 FGLAR 182

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 43.6 bits (103), Expect = 9e-06
 Identities = 19/33 (57%), Positives = 22/33 (66%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           V H+DLK  NIL + D K KI DFGLAR+   D
Sbjct: 124 VFHRDLKPKNILANADCKLKICDFGLARVAFND 156

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 43.5 bits (102), Expect = 9e-06
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 16  DVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDF 75
           D D   +  LD    +HI   I  G+ YL  +     +H+DL A NIL+ E L  KISD 
Sbjct: 112 DEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSH---FFVHKDLAARNILIGEQLHVKISDL 168

Query: 76  GLAR-IFVKDDLEANTNRIV 94
           GL+R I+  D        ++
Sbjct: 169 GLSREIYSADYYRVQPKSLL 188

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 6/50 (12%)

Query: 40  GLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR---IFVKDDL 86
           G+ YL +      IH+DL A NIL+ E+  +KI+DFGL+R   ++VK  +
Sbjct: 124 GMDYLSQKQ---FIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTM 170

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           C + +  + +GL Y+   +   V+H+DLK SN+LL+ +   KI DFGLAR
Sbjct: 110 CQYFLYQLLRGLKYIHSAN---VLHRDLKPSNLLLNANCDLKICDFGLAR 156

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 8/56 (14%)

Query: 34  IQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEAN 89
           ++ I +GL YL       +IH+D+K +NIL+D     KISDFG+++      LEAN
Sbjct: 112 VRQILKGLNYLHNRG---IIHRDIKGANILVDNKGGIKISDFGISK-----KLEAN 159

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           LD      I++ I +GL YL    K   IH+D+KA+N+LL E  + K++DFG+A      
Sbjct: 98  LDETQIATILREILKGLDYLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVAGQLT-- 152

Query: 85  DLEANTNRIVGT 96
           D +   N  VGT
Sbjct: 153 DTQIKRNTFVGT 164

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 9/64 (14%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNR 92
           +  G  QGL YL  ++   +IH+D+KA NILL E    K+ DFG A I       A  N 
Sbjct: 120 VTHGALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSASIM------APANX 170

Query: 93  IVGT 96
            VGT
Sbjct: 171 FVGT 174

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           LD +  +     I +G+ YL        +H+DL   NIL++ + + KI DFGL ++  +D
Sbjct: 105 LDHRKLLLYASQICKGMEYLGS---KRYVHRDLATRNILVESENRVKIGDFGLTKVLPQD 161

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 9/66 (13%)

Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           +++L+W  C+ I +G+     YL+E     ++H+DL A N+L+      KI+DFGLA++ 
Sbjct: 109 QYLLNW--CVQIAKGMN----YLEERR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL 159

Query: 82  VKDDLE 87
             D+ E
Sbjct: 160 GADEKE 165

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 53  IHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           IH+DL A NILL E+   KI DFGLAR   KD
Sbjct: 195 IHRDLAARNILLSENNVVKICDFGLARDIYKD 226

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 19/52 (36%), Positives = 35/52 (67%), Gaps = 3/52 (5%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           +  G+ Y++   ++  IH+DL+++NIL+ + L  KI+DFGLAR+   ++  A
Sbjct: 111 VAAGMAYIE---RMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTA 159

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 17/29 (58%), Positives = 21/29 (72%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARI 80
           +IH+DLK SNI++  D   KI DFGLAR 
Sbjct: 139 IIHRDLKPSNIVVKSDCTLKILDFGLART 167

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 3/49 (6%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
            + + I  G+ YL  + + IV H+D+K SN+L++     KI+DFG++RI
Sbjct: 172 DVARQILSGIAYL--HRRHIV-HRDIKPSNLLINSAKNVKIADFGVSRI 217

Length = 353

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 7/47 (14%)

Query: 35  QGITQGLLYL--QEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           Q I +G+ YL  Q Y     IH+DL A N+LLD D   KI DFGLA+
Sbjct: 114 QQICEGMAYLHSQHY-----IHRDLAARNVLLDNDRLVKIGDFGLAK 155

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           I  G+ YL        +H+DL A N ++ EDL  KI DFG+ R
Sbjct: 128 IADGMAYLAA---KKFVHRDLAARNCMVAEDLTVKIGDFGMTR 167

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 5/64 (7%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNR 92
           I++ I +GL YL    K   IH+D+KA+N+LL E    K++DFG+A       ++ NT  
Sbjct: 106 ILREILKGLDYLHSERK---IHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNT-- 160

Query: 93  IVGT 96
            VGT
Sbjct: 161 FVGT 164

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           K    ++  ++ G+ YL+E +    +H+DL A N+LL     +KISDFGL++    D+
Sbjct: 95  KNITELVHQVSMGMKYLEETN---FVHRDLAARNVLLVTQHYAKISDFGLSKALGADE 149

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. More recently, Syk expression has been detected in other cell types (including epithelial cells, vascular endothelial cells, neurons, hepatocytes, and melanocytes), suggesting a variety of biological functions in non-immune cells. Syk plays a critical role in maintaining vascular integrity and in wound healing during embryogenesis. It also regulates Vav3, which is important in osteoclast function including bone development. In breast epithelial cells, where Syk acts as a negative regulator for epidermal growth factor receptor (EGFR) signaling, loss of Syk expression is associated with abnormal proliferation during cancer development suggesting a potential role as a tumor suppressor. In mice, Syk has been shown to inhibit malignant transformation of mammary epithelial cells induced with murine mammary tumor virus (MMTV). Length = 257

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 3/43 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +  G+ YL+       +H+DL A N+LL    ++KISDFG++R
Sbjct: 104 VAMGMAYLESKH---FVHRDLAARNVLLVNRHQAKISDFGMSR 143

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           + Q + +G+ YL+  S    IH+DL A N L+      K+SDFG+ R +V DD
Sbjct: 105 MCQDVCEGMEYLERNS---FIHRDLAARNCLVSSTGVVKVSDFGMTR-YVLDD 153

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 17/30 (56%), Positives = 23/30 (76%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIF 81
           V+H+DLK  N+L++ D + KI DFGLAR F
Sbjct: 126 VLHRDLKPGNLLVNADCELKICDFGLARGF 155

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 4/43 (9%)

Query: 39  QGLLYLQEYSKLIVIHQDLKASNILLD-EDLKSKISDFGLARI 80
           +GL Y+   +   V+H+DLK +N+ ++ EDL  KI DFGLARI
Sbjct: 125 RGLKYIHSAN---VLHRDLKPANVFINTEDLVLKIGDFGLARI 164

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 19/47 (40%), Positives = 33/47 (70%)

Query: 41  LLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLE 87
           +L L+   KL +I++D+K  NILLD +    ++DFGL++ F +D++E
Sbjct: 115 VLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEVE 161

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 41  LLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGTQE 98
           +L L+   KL ++++D+K  NILLD +    ++DFGL++ F+ ++ E  T    GT E
Sbjct: 115 ILALEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEKE-RTYSFCGTIE 171

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
              I   + +GL YL  Y+   ++H+D+K SNIL++   + K+ DFG++
Sbjct: 105 LGKIAVAVVEGLTYL--YNVHRIMHRDIKPSNILVNSRGQIKLCDFGVS 151

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 53  IHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           IH+DL A NILL E+   KI DFGLAR   KD
Sbjct: 196 IHRDLAARNILLSENNVVKICDFGLARDIYKD 227

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. VEGFR3 preferentially binds the ligands VEGFC and VEGFD. VEGFR3 is essential for lymphatic endothelial cell (EC) development and function. It has been shown to regulate adaptive immunity during corneal transplantation. VEGFR3 is upregulated on blood vascular ECs in pathological conditions such as vascular tumors and the periphery of solid tumors. It plays a role in cancer progression and lymph node metastasis. Missense mutations in the VEGFR3 gene are associated with primary human lymphedema. Length = 338

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 125 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 168

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFG 76
           I + + +GL YL       +IH+D+K SNILL    + K+ DFG
Sbjct: 110 IAESVLKGLSYLHSRK---IIHRDIKPSNILLTRKGQVKLCDFG 150

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 4/118 (3%)

Query: 19  PIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL-KSKISDFGL 77
             R+  L     + I+  I   L YL       +IH+D+K  NILLD D    K+ DFGL
Sbjct: 92  IGRKGPLSESEALFILAQILSALEYLHS---KGIIHRDIKPENILLDRDGRVVKLIDFGL 148

Query: 78  ARIFVKDDLEANTNRIVGTQESYNLWKDGKGRKLMDPSLDDTHSSWKLLTCLQIALLC 135
           A++       ++   +  T      +   +    +  +   + S    L      LL 
Sbjct: 149 AKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLT 206

Length = 384

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I +GL YL       ++H+D+K  N+L++ +   KI DFGLAR+   D+ +  T  +V T
Sbjct: 112 ILRGLKYLHSAG---ILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDESKHMTQEVV-T 167

Query: 97  Q 97
           Q
Sbjct: 168 Q 168

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 41.9 bits (98), Expect = 3e-05
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 6/53 (11%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR---IFVKDDL 86
           +  G+ YL E      IH+DL A N+L+ E+L SKI+DFGL+R   ++VK  +
Sbjct: 128 VATGMQYLSEKQ---FIHRDLAARNVLVGENLASKIADFGLSRGEEVYVKKTM 177

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 7/64 (10%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           + +GL YL+E  K  ++H+D+K SNIL++   + K+ DFG++   +  D  AN+   VGT
Sbjct: 108 VLRGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLI--DSMANS--FVGT 161

Query: 97  QESY 100
           + SY
Sbjct: 162 R-SY 164

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 5/82 (6%)

Query: 9   LYLYLIFDVDP---IRRFILDWKTCIHIIQG--ITQGLLYLQEYSKLIVIHQDLKASNIL 63
            YLYLI +  P   +   ++ + T    +    + + +L ++   KL  IH+D+K  NIL
Sbjct: 74  QYLYLIMEFLPGGDLMTMLIKYDTFSEDVTRFYMAECVLAIEAVHKLGFIHRDIKPDNIL 133

Query: 64  LDEDLKSKISDFGLARIFVKDD 85
           +D     K+SDFGL+  F K  
Sbjct: 134 IDRGGHIKLSDFGLSTGFHKQH 155

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play similar roles in coordinating cell morphology with cell cycle progression. Ukc1 is involved in morphogenesis, pathogenicity, and pigment formation. Cot1 plays a role in polar tip extension. Length = 377

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 16/30 (53%), Positives = 22/30 (73%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIF 81
           ++H+DLK SN+LL+     KI DFGLAR +
Sbjct: 127 ILHRDLKTSNLLLNNRGILKICDFGLAREY 156

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 41.5 bits (97), Expect = 4e-05
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 6/66 (9%)

Query: 17  VDPIR---RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKIS 73
           VD +R   R +L     +     + + + YL+  +    +H+DL A N+L+ ED  +K+S
Sbjct: 88  VDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANN---FVHRDLAARNVLVSEDNVAKVS 144

Query: 74  DFGLAR 79
           DFGL +
Sbjct: 145 DFGLTK 150

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

 Score = 41.5 bits (97), Expect = 4e-05
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           + ++  ++ G+ YL+  +    +H+DL A N+LL     +KISDFGL++    DD
Sbjct: 98  VELMHQVSMGMKYLEGKN---FVHRDLAARNVLLVNQHYAKISDFGLSKALGADD 149

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 41.4 bits (97), Expect = 4e-05
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 12  YLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSK 71
           Y I++VD       + + C +  Q I  GL +L +     +I++DLK  N+LLD D   +
Sbjct: 82  YHIYNVDEENPGFPEPRACFYTAQ-IISGLEHLHQRR---IIYRDLKPENVLLDNDGNVR 137

Query: 72  ISDFGLA 78
           ISD GLA
Sbjct: 138 ISDLGLA 144

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score = 41.5 bits (97), Expect = 4e-05
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I + +L L+   K  ++++DLK  NILLD      + DFGL++  + D+    TN   GT
Sbjct: 102 IAELVLALEHLHKYDIVYRDLKPENILLDATGHIALCDFGLSKANLTDN--KTTNTFCGT 159

Query: 97  QE 98
            E
Sbjct: 160 TE 161

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 41.4 bits (97), Expect = 5e-05
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE-DLKSKISDFGLAR 79
              +LD  T   I+    Q LL L      +++H+DLK  NILLD+  +  KI DFG+++
Sbjct: 94  CNSLLDEDT---ILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISK 150

Query: 80  IFVKDDLEANTNRIVGT 96
           I      ++    +VGT
Sbjct: 151 ILSS---KSKAYTVVGT 164

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 41.2 bits (96), Expect = 5e-05
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 5/64 (7%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNR 92
           +++ I +GL YL    K   IH+D+KA+N+LL E    K++DFG+A       ++ NT  
Sbjct: 106 MLKEILKGLDYLHSEKK---IHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNT-- 160

Query: 93  IVGT 96
            VGT
Sbjct: 161 FVGT 164

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 41.1 bits (96), Expect = 5e-05
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 20/82 (24%)

Query: 39  QGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT-- 96
           +GL +L  +    V+H+DLK  NIL+    + K++DFGLARI+     +     +V T  
Sbjct: 121 RGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLARIY---SFQMALTSVVVTLW 174

Query: 97  --------QESY----NLWKDG 106
                   Q SY    +LW  G
Sbjct: 175 YRAPEVLLQSSYATPVDLWSVG 196

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 3/43 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           I  GL +L E     +I++DLK  N+LLD +   KI+DFG+ +
Sbjct: 105 IVLGLQFLHERG---IIYRDLKLDNVLLDSEGHIKIADFGMCK 144

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 41.0 bits (96), Expect = 6e-05
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 4/49 (8%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           + +G+ YL+       IH+DL A N L+D+    K+SDFGL+R +V DD
Sbjct: 109 VCEGMAYLESKQ---FIHRDLAARNCLVDDQGCVKVSDFGLSR-YVLDD 153

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 41.0 bits (96), Expect = 6e-05
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 4/49 (8%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           I+  + YL++ +    IH+DL A N L+ E+   K++DFGL+R  +  D
Sbjct: 113 ISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSR-LMTGD 157

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 40.8 bits (95), Expect = 7e-05
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 6/59 (10%)

Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR---IFVKDDL 86
           +H    + +G+ YL   S+   IH+DL A NIL+ E+  +KI+DFGL+R   ++VK  +
Sbjct: 127 LHFAADVARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTM 182

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

 Score = 40.8 bits (95), Expect = 7e-05
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 53  IHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           IH+DL A NILL E+   KI DFGLAR   KD
Sbjct: 201 IHRDLAARNILLSENNVVKICDFGLARDIYKD 232

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosphorylation and activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD and VEGFE. VEGFR2 signaling is implicated in all aspects of normal and pathological vascular endothelial cell biology. It induces a variety of cellular effects including migration, survival, and proliferation. It is critical in regulating embryonic vascular development and angiogenesis. VEGFR2 is the major signal transducer in pathological angiogenesis including cancer and diabetic retinopathy, and is a target for inhibition in cancer therapy. Length = 343

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 40.6 bits (95), Expect = 8e-05
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 3/42 (7%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           I  GL +L +     ++++DLK  N+LLD+    +ISD GLA
Sbjct: 104 IICGLEHLHQ---RRIVYRDLKPENVLLDDHGNVRISDLGLA 142

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 40.8 bits (95), Expect = 8e-05
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 23/96 (23%)

Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLE 87
           K  I +I+G+T    YL+E  K  ++H+D+K SNIL++   + K+ DFG++   +    +
Sbjct: 107 KVSIAVIKGLT----YLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLI----D 156

Query: 88  ANTNRIVGTQESYNLWKDGKGRKLMDPS-LDDTHSS 122
           +  N  VGT            R  M P  L  TH S
Sbjct: 157 SMANSFVGT------------RSYMSPERLQGTHYS 180

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLAR 79
           +IH+D+K  NIL+ E    K+ DFG AR
Sbjct: 121 IIHRDIKPENILVSESGVLKLCDFGFAR 148

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 40.5 bits (95), Expect = 8e-05
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           I QG+L+        V+H+DLK  N+L+D     K++DFGLAR F
Sbjct: 110 ILQGILFCHSRR---VLHRDLKPQNLLIDNKGVIKLADFGLARAF 151

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 40.5 bits (95), Expect = 8e-05
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 8/74 (10%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           R   L  +  +     + +G+ +L   +    IH+DL A N+LL      KI DFGLAR 
Sbjct: 134 RESFLTLEDLLSFSYQVAKGMAFLASKN---CIHRDLAARNVLLTHGKIVKICDFGLAR- 189

Query: 81  FVKDDLEANTNRIV 94
               D+  ++N +V
Sbjct: 190 ----DIMNDSNYVV 199

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 40.6 bits (95), Expect = 9e-05
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 41  LLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           L YL +  +  ++H+DL  +NI+L ED K  I+DFGLA+   +   E+    +VGT
Sbjct: 126 LRYLHKEKR--IVHRDLTPNNIMLGEDDKVTITDFGLAK---QKQPESKLTSVVGT 176

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 40.5 bits (95), Expect = 9e-05
 Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 3/40 (7%)

Query: 40  GLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           G+ YL+  +    IH+DL A N L+ E+   KISDFG++R
Sbjct: 105 GMEYLESKN---CIHRDLAARNCLVGENNVLKISDFGMSR 141

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 40.5 bits (95), Expect = 9e-05
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD---LEANTNR 92
           I  G+ YL +     VIH+D+ A N ++DE+L+ KI+D  L+R     D   L  N NR
Sbjct: 126 IACGMSYLHKRG---VIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENR 181

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +HI Q I  G++YL        +H+DL   N L+ E+L  KI DFG++R
Sbjct: 123 LHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKIGDFGMSR 168

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 42  LYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGTQE 98
           L L     L +I++DLK  NILLDE+   K++DFGL++  +  D E       GT E
Sbjct: 109 LALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESI--DHEKKAYSFCGTVE 163

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 23  FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           F L  +T +  +  I  G+ YL   S    IH+DL A N +L+E++   ++DFGL++
Sbjct: 108 FTLPLQTLVRFMIDIASGMEYL---SSKNFIHRDLAARNCMLNENMTVCVADFGLSK 161

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 3/49 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           I +G+ YL+E     ++H+DL A N+L+      KI+DFGLA++   D+
Sbjct: 118 IAKGMSYLEEKR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDE 163

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase, Kit

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 5/42 (11%)

Query: 53  IHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIV 94
           IH+DL A NILL     +KI DFGLAR     D+  ++N +V
Sbjct: 236 IHRDLAARNILLTHGRITKICDFGLAR-----DIRNDSNYVV 272

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. Kit signaling is involved in major cellular functions including cell survival, proliferation, differentiation, adhesion, and chemotaxis. Mutations in Kit, which result in constitutive ligand-independent activation, are found in human cancers such as gastrointestinal stromal tumor (GIST) and testicular germ cell tumor (TGCT). The aberrant expression of Kit and/or SCF is associated with other tumor types such as systemic mastocytosis and cancers of the breast, neurons, lung, prostate, colon, and rectum. Although the structure of the human Kit catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 375

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 8/76 (10%)

Query: 9   LYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL 68
           LY YL     P+          + I + I +GL YL       +IH+D+K  NI +++  
Sbjct: 143 LYTYLTKRSRPL-----PIDQALIIEKQILEGLRYLHAQR---IIHRDVKTENIFINDVD 194

Query: 69  KSKISDFGLARIFVKD 84
           +  I D G A+  V  
Sbjct: 195 QVCIGDLGAAQFPVVA 210

Length = 357

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
             + L  L+   K  VI++DLK  NILLD      + DFGL ++ +KDD    TN   GT
Sbjct: 99  TAELLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDD--DKTNTFCGT 156

Query: 97  QE 98
            E
Sbjct: 157 PE 158

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 19  PIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD---EDLKSKISDF 75
           P R   L  K  +   + + +G  YL+E      IH+D+ A N LL        +KI+DF
Sbjct: 107 PERPSSLTMKDLLFCARDVAKGCKYLEENH---FIHRDIAARNCLLTCKGPGRVAKIADF 163

Query: 76  GLAR 79
           G+AR
Sbjct: 164 GMAR 167

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +HI+  I  G+ +L  +    V+H+DL   N+L+ + L  KISD GL R
Sbjct: 127 VHIVTQIAAGMEFLSSHH---VVHKDLATRNVLVFDKLNVKISDLGLFR 172

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
            II  I QGL ++    K    H+DLK  N+L+      KI+DFGLAR
Sbjct: 103 SIIYQILQGLAHIH---KHGFFHRDLKPENLLVSGPEVVKIADFGLAR 147

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 3/47 (6%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  + +GL Y+       +IH+DLK SN+ ++ED + +I DFGLAR
Sbjct: 123 LIYQLLRGLKYIHSAG---IIHRDLKPSNVAVNEDCELRILDFGLAR 166

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 13/79 (16%)

Query: 9   LYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL 68
           L++Y  FD +   ++I +          +   L YL  +    +IH+DLK  N+L+  + 
Sbjct: 95  LHIYGYFDEEMAVKYISE----------VALALDYLHRHG---IIHRDLKPDNMLISNEG 141

Query: 69  KSKISDFGLARIFVKDDLE 87
             K++DFGL+++ +  +L 
Sbjct: 142 HIKLTDFGLSKVTLNRELN 160

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 10/97 (10%)

Query: 38  TQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGTQ 97
           T+ +L L+      V+++DLK +NILLDE    +ISD GLA  F K    A+    VGT 
Sbjct: 104 TEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS----VGTH 159

Query: 98  ESYNLWKDGKGRKLMDPSLDDTHSSWKLLTCLQIALL 134
                    KG         D+ + W  L C+   LL
Sbjct: 160 GYMAPEVLQKGTAY------DSSADWFSLGCMLFKLL 190

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 19/49 (38%), Positives = 30/49 (61%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           I+Q   Q  L +Q   +  V+H+D+K+ NI L ++ K K+ DFG AR+ 
Sbjct: 102 ILQWFVQMCLGVQHIHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLL 150

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 12/69 (17%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTN 91
           +I + I +GL +L ++    VIH+D+K  N+LL E+ + K+ DFG++         A  +
Sbjct: 115 YICREILRGLSHLHQHK---VIHRDIKGQNVLLTENAEVKLVDFGVS---------AQLD 162

Query: 92  RIVGTQESY 100
           R VG + ++
Sbjct: 163 RTVGRRNTF 171

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 12  YLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSK 71
           Y+  D+  I    L      +++  +  GL Y+       +IH+DLK  N+ ++ED + K
Sbjct: 101 YMQTDLQKIMGHPLSEDKVQYLVYQMLCGLKYIHSAG---IIHRDLKPGNLAVNEDCELK 157

Query: 72  ISDFGLAR 79
           I DFGLAR
Sbjct: 158 ILDFGLAR 165

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           L+ +  IH    IT G+L+L     + ++++D+K  N+LLD+    ++SD GLA
Sbjct: 92  LEMERVIHYSAQITCGILHLHS---MDIVYRDMKPENVLLDDQGNCRLSDLGLA 142

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 19/48 (39%), Positives = 26/48 (54%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           I + +L +    KL  IH+D+K  N+LLD     K+SDFGL     K 
Sbjct: 107 IAETILAIDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKS 154

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This subfamily also contains fungal NDR-like kinases. Length = 364

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 15  FDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISD 74
           FD   +    L +K  +     + +G+ YL        IH+DL A N+L+ ED   KI+D
Sbjct: 121 FDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQK---CIHRDLAARNVLVTEDNVMKIAD 177

Query: 75  FGLAR 79
           FGLAR
Sbjct: 178 FGLAR 182

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I   L YL  +S+  V+++DLK  N++LD+D   KI+DFGL +  +KD   A      GT
Sbjct: 104 IVSALDYL--HSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDG--ATMKTFCGT 159

Query: 97  QE 98
            E
Sbjct: 160 PE 161

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 12/89 (13%)

Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           R       CI  +  I  GL  L ++     +H+DL  +NI ++     KI+DFGLAR +
Sbjct: 115 RLTESQVKCI--LLQILNGLNVLHKWY---FMHRDLSPANIFINSKGICKIADFGLARRY 169

Query: 82  VKD-------DLEANTNRIVGTQESYNLW 103
                       E    R   T +   LW
Sbjct: 170 GYPPYSDTLSKDETMQRREEMTSKVVTLW 198

Length = 335

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 24  ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
            + + + +H+   I  G+ YL   S L  +H+DL   N L+ E+L  KI+DFG++R
Sbjct: 134 AISYSSLLHVALQIASGMKYL---SSLNFVHRDLATRNCLVGENLTIKIADFGMSR 186

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 41  LLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGTQ 97
           +L L+      V+++DLK +NILLDE    +ISD GLA  F K    A+    VGT 
Sbjct: 107 ILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS----VGTH 159

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           LD    +     + QG+ +L   +    IH+D+ A N+LL +   +KI DFGLAR     
Sbjct: 209 LDLDDLLRFSSQVAQGMDFLASKN---CIHRDVAARNVLLTDGRVAKICDFGLAR----- 260

Query: 85  DLEANTNRIV 94
           D+  ++N +V
Sbjct: 261 DIMNDSNYVV 270

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. It leads to increases in gene transcription and protein translation, and induces cytoskeletal remodeling. CSF-1R signaling leads to a variety of cellular responses including survival, proliferation, and differentiation of target cells. It plays an important role in innate immunity, tissue development and function, and the pathogenesis of some diseases including atherosclerosis and cancer. CSF-1R signaling is also implicated in mammary gland development during pregnancy and lactation. Aberrant CSF-1/CSF-1R expression correlates with tumor cell invasiveness, poor clinical prognosis, and bone metastasis in breast cancer. Although the structure of the human CSF-1R catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 374

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 5/64 (7%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNR 92
           II+ +   L Y+    K+ VIH+D+KA+NIL+      K+ DFG+A +  ++  + +T  
Sbjct: 106 IIREVLVALKYIH---KVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRST-- 160

Query: 93  IVGT 96
            VGT
Sbjct: 161 FVGT 164

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 15/30 (50%), Positives = 24/30 (80%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIF 81
           V+H+DLK  N+L+++  + K++DFGLAR F
Sbjct: 121 VLHRDLKPQNLLINKRGELKLADFGLARAF 150

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 3/43 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + +G+ YL   SK  V H+DL A N +LDE    K++DFGLAR
Sbjct: 107 VAKGMEYLA--SKKFV-HRDLAARNCMLDESFTVKVADFGLAR 146

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + I   I  G++YL   + L  +H+DL   N L+ + L  KI DFG++R
Sbjct: 125 LAIASQIASGMVYL---ASLHFVHRDLATRNCLVGQGLVVKIGDFGMSR 170

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           I  G+ YL   S    IH+DL A N +L ED+   ++DFGL++
Sbjct: 122 IALGMEYL---SNRNFIHRDLAARNCMLREDMTVCVADFGLSK 161

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 5/67 (7%)

Query: 13  LIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKI 72
           L+F +   RRF    +   +  + IT  L++L +     +I++DLK  N+LLD +   K+
Sbjct: 83  LMFHIQKSRRFDEA-RARFYAAE-ITSALMFLHDKG---IIYRDLKLDNVLLDHEGHCKL 137

Query: 73  SDFGLAR 79
           +DFG+ +
Sbjct: 138 ADFGMCK 144

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           L  K  I +++    G+ YL+  SK   IH+DL A N L+ E    KISDFG++R
Sbjct: 91  LKVKELIQMVENAAAGMEYLE--SKH-CIHRDLAARNCLVTEKNVLKISDFGMSR 142

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 15  FDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISD 74
           +D+  +    + +K  +     + +G+ YL        IH+DL A N+L+ E+   KI+D
Sbjct: 124 YDIARVPDEQMTFKDLVSCTYQVARGMEYLASQK---CIHRDLAARNVLVTENNVMKIAD 180

Query: 75  FGLAR 79
           FGLAR
Sbjct: 181 FGLAR 185

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 49  KLIVIHQDLKASNILLDEDL-KSKISDFGLARIF 81
           K  V+H+DLK  N+L+D+     KI+D GL R F
Sbjct: 128 KHGVMHRDLKPQNLLVDKQKGLLKIADLGLGRAF 161

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 17/43 (39%), Positives = 31/43 (72%), Gaps = 3/43 (6%)

Query: 39  QGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           +GL +   ++   V+H+DLK  N+L++++ + K++DFGLAR F
Sbjct: 110 KGLAFCHSHN---VLHRDLKPQNLLINKNGELKLADFGLARAF 149

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 3/43 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + +GL Y+       +IH+DLK  N+ ++ED + KI DFGLAR
Sbjct: 127 MLKGLKYIHAAG---IIHRDLKPGNLAVNEDCELKILDFGLAR 166

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
            I     + L YL+E  +L +IH+D+K SNILLD +   K+ DFG++
Sbjct: 111 KIAVATVKALNYLKE--ELKIIHRDVKPSNILLDRNGNIKLCDFGIS 155

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 14/75 (18%)

Query: 26  DWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           DW    +I + I +GL +L  +    VIH+D+K  N+LL E+ + K+ DFG++       
Sbjct: 121 DW--IAYICREILRGLAHLHAHK---VIHRDIKGQNVLLTENAEVKLVDFGVS------- 168

Query: 86  LEANTNRIVGTQESY 100
             A  +R VG + ++
Sbjct: 169 --AQLDRTVGRRNTF 181

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I   L YL       V+++DLK  N++LD+D   KI+DFGL +  + D   A      GT
Sbjct: 104 IVSALGYLHSCD---VVYRDLKLENLMLDKDGHIKITDFGLCKEGISDG--ATMKTFCGT 158

Query: 97  QE 98
            E
Sbjct: 159 PE 160

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 25/105 (23%)

Query: 36  GITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVG 95
            + +GL YL+E  K  ++H+D+K SNIL++   + K+ DFG++   +    ++  N  VG
Sbjct: 111 AVLRGLAYLRE--KHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLI----DSMANSFVG 164

Query: 96  TQESYNLWKDGKGRKLMDPS-LDDTHSS-----WKL-LTCLQIAL 133
           T            R  M P  L  TH S     W + L+ +++A+
Sbjct: 165 T------------RSYMSPERLQGTHYSVQSDIWSMGLSLVELAI 197

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 15/30 (50%), Positives = 23/30 (76%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIF 81
           ++H+DLK  NIL+    + K++DFGLARI+
Sbjct: 129 IVHRDLKPENILVTSGGQVKLADFGLARIY 158

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 38.8 bits (90), Expect = 4e-04
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 3/43 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + +G+ YL        IH+DL A N+L+ ED   KI+DFGLAR
Sbjct: 149 VARGMEYLASKK---CIHRDLAARNVLVTEDNVMKIADFGLAR 188

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + I   I  G++YL   +    +H+DL   N L+  DL  KI DFG++R
Sbjct: 125 LQIAVQIASGMVYL---ASQHFVHRDLATRNCLVGYDLVVKIGDFGMSR 170

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 8/64 (12%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           + +GL YL  +    ++H+D+K +NI LD +   K+ DFG A       L+ NT  +   
Sbjct: 108 LLEGLAYLHSHG---IVHRDIKPANIFLDHNGVIKLGDFGCAVK-----LKNNTTTMGEE 159

Query: 97  QESY 100
            +S 
Sbjct: 160 VQSL 163

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           I  GL +L       +I++DLK  N++LD +   KI+DFG+ +
Sbjct: 110 IAIGLFFLHSKG---IIYRDLKLDNVMLDAEGHIKIADFGMCK 149

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 3/38 (7%)

Query: 40  GLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL 77
           GL YL E     ++++DLK  N+LLD +   KI+DFGL
Sbjct: 113 GLQYLHENK---IVYRDLKLDNLLLDTEGFVKIADFGL 147

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 11/77 (14%)

Query: 10  YLYLIFDVDP--------IRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASN 61
           +LYL+ +  P        IR+ +   +T    I  +    L L    KL  IH+D+K  N
Sbjct: 75  HLYLVMEYMPGGDLMNLLIRKDVFPEETARFYIAELV---LALDSVHKLGFIHRDIKPDN 131

Query: 62  ILLDEDLKSKISDFGLA 78
           IL+D D   K++DFGL 
Sbjct: 132 ILIDADGHIKLADFGLC 148

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 3/43 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           I  GL YL  + +  V H+D+K +NIL+D +   K++DFG+A+
Sbjct: 111 ILLGLEYL--HDRNTV-HRDIKGANILVDTNGVVKLADFGMAK 150

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 38.1 bits (88), Expect = 6e-04
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I   L YL       V+++D+K  N++LD+D   KI+DFGL +  + D   A      GT
Sbjct: 104 IVSALEYLHSRD---VVYRDIKLENLMLDKDGHIKITDFGLCKEGISD--GATMKTFCGT 158

Query: 97  QE 98
            E
Sbjct: 159 PE 160

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 3/42 (7%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           + + L +L  +    VIH+DLKA NILL  D   K++DFG++
Sbjct: 112 MLEALNFLHSHK---VIHRDLKAGNILLTLDGDVKLADFGVS 150

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 38.1 bits (88), Expect = 6e-04
 Identities = 17/28 (60%), Positives = 21/28 (75%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLAR 79
           +IH+DLK SNI++  D   KI DFGLAR
Sbjct: 144 IIHRDLKPSNIVVKSDCTLKILDFGLAR 171

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 38.1 bits (88), Expect = 7e-04
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 3/40 (7%)

Query: 39  QGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           QGL YL    K+   H+D+K +NILL ++   K++DFG+A
Sbjct: 117 QGLAYLHSKGKM---HRDIKGANILLTDNGDVKLADFGVA 153

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 37.9 bits (88), Expect = 7e-04
 Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           I  GL +L  + K I I++DLK  N+LLD+D   KI+DFG+ +  +  + +A+T
Sbjct: 105 IICGLQFL--HKKGI-IYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKAST 155

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional

 Score = 38.0 bits (88), Expect = 7e-04
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 39  QGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGTQE 98
           Q +L  +    L ++++DLK  N+LLD+D   K++DFG A++     ++  T  + GT E
Sbjct: 139 QIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGFAKV-----VDTRTYTLCGTPE 193

Length = 340

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 37.9 bits (88), Expect = 7e-04
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 8/51 (15%)

Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD---EDLKSKISDFGLA 78
           I+  + + +GL YL E     +IH+D+K +N+L+D   + L  +I+DFG A
Sbjct: 106 INYTEQLLRGLSYLHENQ---IIHRDVKGANLLIDSTGQRL--RIADFGAA 151

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 37.9 bits (89), Expect = 7e-04
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 20/99 (20%)

Query: 10  YLYLIFDVDP----------IRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKA 59
            LYL+ +  P            RF        +  Q +   L YL     L ++++DLK 
Sbjct: 75  NLYLVMEYVPGGELFSHLRKSGRFPEPV-ARFYAAQ-VVLALEYLH---SLDIVYRDLKP 129

Query: 60  SNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGTQE 98
            N+LLD D   KI+DFG A+      ++  T  + GT E
Sbjct: 130 ENLLLDSDGYIKITDFGFAKR-----VKGRTYTLCGTPE 163

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 3/43 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +T  L++L  +    VI++DLK  NILLD +   K++DFG+ +
Sbjct: 105 VTLALMFLHRHG---VIYRDLKLDNILLDAEGHCKLADFGMCK 144

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 37.7 bits (87), Expect = 8e-04
 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 3/43 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           I +GL Y     +  V+H+DLK  N+L++E  + K++DFGLAR
Sbjct: 113 ILRGLAYCH---RRKVLHRDLKPQNLLINERGELKLADFGLAR 152

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)

Query: 49  KLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGTQE 98
           +L  IH+DLK  N L+D     K++DFGL++  V        N +VG+ +
Sbjct: 119 ELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIV-----TYANSVVGSPD 163

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 37.7 bits (87), Expect = 9e-04
 Identities = 17/28 (60%), Positives = 21/28 (75%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLAR 79
           +IH+DLK SNI++  D   KI DFGLAR
Sbjct: 147 IIHRDLKPSNIVVKSDCTLKILDFGLAR 174

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 37.7 bits (87), Expect = 9e-04
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           + + + Q L YL       VIH+D+K+ +ILL  D + K+SDFG      KD
Sbjct: 122 VCESVLQALCYLHSQG---VIHRDIKSDSILLTLDGRVKLSDFGFCAQISKD 170

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 8/54 (14%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKS-----KISDFGLARIFVKDD 85
           + +G +YL+   ++  IH+DL A N L+ E         KI DFGLAR   K D
Sbjct: 115 VAKGCVYLE---QMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSD 165

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 1/31 (3%)

Query: 52  VIHQDLKASNILLDEDLKS-KISDFGLARIF 81
           V+H+DLK  N+L+D    + K++DFGLAR F
Sbjct: 123 VLHRDLKPQNLLIDRRTNALKLADFGLARAF 153

Length = 294

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 3/43 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           I +G+ YL  +S +IV H+D+K +NIL D     K+ DFG ++
Sbjct: 113 ILEGVEYL--HSNMIV-HRDIKGANILRDSAGNVKLGDFGASK 152

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           +  I I + + + L YL       +IH+D+K  NI LDE   + + DFG A
Sbjct: 185 EQAITIQRRLLEALAYLHGRG---IIHRDVKTENIFLDEPENAVLGDFGAA 232

Length = 392

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 17/28 (60%), Positives = 21/28 (75%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLAR 79
           +IH+DLK SNI++  D   KI DFGLAR
Sbjct: 140 IIHRDLKPSNIVVKSDCTLKILDFGLAR 167

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 32  HIIQGIT-QGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           H+I+ I  Q L  +    K   IH+D+K  NIL+ +  + K+ DFG ARI
Sbjct: 100 HLIKKIIWQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARI 149

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase adapter protein

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVK 83
           I++ +   L Y+        IH+ +KAS+ILL  D K  +S    +   +K
Sbjct: 106 ILKDVLNALDYIH---SKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIK 153

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. The structure of STRAD-alpha is available and shows that this protein binds ATP, has an ordered activation loop, and adopts a closed conformation typical of fully active protein kinases. It does not possess activity due to nonconservative substitutions of essential catalytic residues. ATP binding enhances the affinity of STRAD for MO25. The conformation of STRAD-alpha stabilized through ATP and MO25 may be needed to activate LKB1. Length = 314

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 37.2 bits (86), Expect = 0.001
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 15/62 (24%)

Query: 37  ITQGLLYL--QEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF--------VKDDL 86
           I +G+ YL  ++Y     +H+DL A N+L++ + + KI DFGL +          VKDDL
Sbjct: 118 ICKGMDYLGSRQY-----VHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDL 172

Query: 87  EA 88
           ++
Sbjct: 173 DS 174

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
            DW       Q I + +L +++  +  +IH+D+K  N+L+D+    K++DFGL+R 
Sbjct: 96  EDW-----AKQYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGLSRN 146

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I  GL +L  +SK IV ++DLK  NILLD D   KI+DFG+ +  +  D  A T    GT
Sbjct: 105 IICGLQFL--HSKGIV-YRDLKLDNILLDTDGHIKIADFGMCKENMLGD--AKTCTFCGT 159

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +++   I  G+ YL   + L  +H+DL   N L+      KI+DFG++R
Sbjct: 132 LYMAVQIASGMKYL---ASLNFVHRDLATRNCLVGNHYTIKIADFGMSR 177

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 15/28 (53%), Positives = 22/28 (78%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLAR 79
           V+H+DLK  N+L+ E  + K++DFGLAR
Sbjct: 124 VLHRDLKPQNLLISERGELKLADFGLAR 151

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 13/28 (46%), Positives = 20/28 (71%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I++DLK  N+LLD     K++DFG A+
Sbjct: 139 IIYRDLKPENLLLDNKGHVKVTDFGFAK 166

Length = 329

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           K  I +   I  G+ YL        +H+DL A N ++ ED   KI DFG+ R   + D
Sbjct: 119 KKMIQMAGEIADGMAYLNANK---FVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETD 173

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 9/64 (14%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEAN--TNRIV 94
           I   L YL     L +I++DLK  NILLD      ++DFGL     K+ +E +  T+   
Sbjct: 105 IASALGYLHS---LNIIYRDLKPENILLDSQGHVVLTDFGLC----KEGIEHSKTTSTFC 157

Query: 95  GTQE 98
           GT E
Sbjct: 158 GTPE 161

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 14/25 (56%), Positives = 19/25 (76%)

Query: 53  IHQDLKASNILLDEDLKSKISDFGL 77
           IH+D+K  NIL+D D   K++DFGL
Sbjct: 123 IHRDIKPDNILIDRDGHIKLTDFGL 147

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Length = 376

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           ++H+D+K  NI L +    K+ DFG+++I   +   A T  +VGT
Sbjct: 122 ILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAET--VVGT 164

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 3/40 (7%)

Query: 39  QGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           QGL YL    K   +H+D+K +NILL ++   K++DFG++
Sbjct: 117 QGLYYLHSKGK---MHRDIKGANILLTDNGHVKLADFGVS 153

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|178763 PLN03224, PLN03224, probable serine/threonine protein kinase; Provisional

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 18/49 (36%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 31  IHIIQGIT-QGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           I++I+G+  Q L  L++  ++ ++H+D+K  N+L+  D + KI DFG A
Sbjct: 308 INVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDFGAA 356

Length = 507

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           I  GL +L       +I++DLK  N++LD +   KI+DFG+ +  + D +   T
Sbjct: 110 IAIGLFFLHSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGVTTKT 160

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +  +  +  I  G+ YL   S    IH+DL A N +L+E++   ++DFGL++
Sbjct: 112 QMLVKFMTDIASGMEYLSSKS---FIHRDLAARNCMLNENMNVCVADFGLSK 160

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 29  TCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           T +++   I  G+ YL     L  +H+DL   N L+ ++   KI+DFG++R
Sbjct: 131 TLLYMATQIASGMRYL---ESLNFVHRDLATRNCLVGKNYTIKIADFGMSR 178

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

 Score = 36.1 bits (83), Expect = 0.003
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           I  GLL+L + +    IH DL   N LL  DL  KI D+GL+    K+D
Sbjct: 109 IALGLLHLHKNN---FIHSDLALRNCLLTADLTVKIGDYGLSHNKYKED 154

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells. Aatyk1 has been implicated in neural differentiation, and is a regulator of the Na-K-2Cl cotransporter, a membrane protein involved in cell proliferation and survival, epithelial transport, and blood pressure control. The function of Aatyk3 is still unknown. Length = 269

>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

 Score = 36.1 bits (83), Expect = 0.003
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           +  I +   I  G+ YL        +H+DL A N ++  D   KI DFG+ R   + D
Sbjct: 119 QEMIQMAAEIADGMAYLNAKK---FVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETD 173

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 3/43 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           I QG+ YL  +S +IV H+D+K +NIL D     K+ DFG ++
Sbjct: 115 ILQGVSYL--HSNMIV-HRDIKGANILRDSAGNVKLGDFGASK 154

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 39  QGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +GL Y  +     ++H+DLK  N+L++E  + K++DFGLAR
Sbjct: 114 RGLSYCHKRK---ILHRDLKPQNLLINEKGELKLADFGLAR 151

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 41  LLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGTQE 98
            L L+   +  +I++DLK  NILLD     K++DFGL +  + +     T+   GT E
Sbjct: 110 SLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEG--TVTHTFCGTIE 165

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|173715 cd05626, STKc_LATS2, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

 Score = 36.1 bits (83), Expect = 0.003
 Identities = 18/45 (40%), Positives = 27/45 (60%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           I +  L ++   K+  IH+D+K  NIL+D D   K++DFGL   F
Sbjct: 107 IAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGF 151

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with poor prognosis in acute lymphoblastic leukemia and breast cancer. Length = 381

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 36.0 bits (83), Expect = 0.003
 Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 7/68 (10%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNR 92
           I   + +GL +L+E  +  +IH+D+K +N+L++ + + K+ DFG++   V     A TN 
Sbjct: 107 ITYAVVKGLKFLKE--EHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVAS--LAKTN- 161

Query: 93  IVGTQESY 100
            +G Q SY
Sbjct: 162 -IGCQ-SY 167

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 15/28 (53%), Positives = 23/28 (82%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLAR 79
           V+H+DLK  N+L++E  + K++DFGLAR
Sbjct: 125 VLHRDLKPQNLLINERGELKLADFGLAR 152

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 35.9 bits (83), Expect = 0.004
 Identities = 14/25 (56%), Positives = 20/25 (80%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFG 76
           VIH+D+K+ +ILL  D + K+SDFG
Sbjct: 136 VIHRDIKSDSILLTSDGRVKLSDFG 160

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 35.7 bits (82), Expect = 0.004
 Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 3/40 (7%)

Query: 40  GLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           G+ YL+  +    IH+DL A N L+ E+   KISDFG++R
Sbjct: 105 GMAYLESKN---CIHRDLAARNCLVGENNVLKISDFGMSR 141

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 3/43 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           I +G+ YL  +S +IV H+D+K +NIL D     K+ DFG ++
Sbjct: 115 ILEGVSYL--HSNMIV-HRDIKGANILRDSVGNVKLGDFGASK 154

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 35.7 bits (82), Expect = 0.004
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           I  GL +L  +SK I I++DLK  N++LD D   KI+DFG+ +  V  D  A+T
Sbjct: 105 IVCGLQFL--HSKGI-IYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRAST 155

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 15/35 (42%), Positives = 24/35 (68%)

Query: 44  LQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           L++  +  ++++DLK  NILLD+    +ISD GLA
Sbjct: 115 LEDLHQERIVYRDLKPENILLDDHGHIRISDLGLA 149

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 35.6 bits (82), Expect = 0.004
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           IT GL  L       ++++DLK  NILLD+    +ISD GLA
Sbjct: 111 ITCGLEDLHRER---IVYRDLKPENILLDDYGHIRISDLGLA 149

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

 Score = 35.7 bits (82), Expect = 0.004
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 40  GLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
            LL LQ      +IH+D+K +NILL  +   K+ DFG++       L  NT+  VGT
Sbjct: 137 ALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTS--VGT 191

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291

>gnl|CDD|133238 cd05107, PTKc_PDGFR_beta, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 53  IHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           +H+DL A N+L+ E    KI DFGLAR  ++D
Sbjct: 261 VHRDLAARNVLICEGKLVKICDFGLARDIMRD 292

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-DD induce PDGFR beta homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR beta signaling leads to a variety of cellular effects including the stimulation of cell growth and chemotaxis, as well as the inhibition of apoptosis and GAP junctional communication. It is critical in normal angiogenesis as it is involved in the recruitment of pericytes and smooth muscle cells essential for vessel stability. Aberrant PDGFR beta expression is associated with some human cancers. The continuously-active fusion proteins of PDGFR beta with COL1A1 and TEL are associated with dermatofibrosarcoma protuberans (DFSP) and a subset of chronic myelomonocytic leukemia (CMML), respectively. Length = 401

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.9
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.76
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.69
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.67
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.63
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.61
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.6
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.6
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.6
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.6
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.6
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.6
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.59
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.58
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.57
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.57
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.57
KOG0578	550	consensus p21-activated serine/threonine protein k	99.57
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.54
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.54
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.54
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.53
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.53
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.5
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.49
KOG0198	313	consensus MEKK and related serine/threonine protei	99.49
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.48
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.48
PTZ00267	478	NIMA-related protein kinase; Provisional	99.46
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.46
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.45
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.44
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.44
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.43
PTZ00283	496	serine/threonine protein kinase; Provisional	99.43
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.42
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.42
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.42
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.42
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.42
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.42
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.41
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.41
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.41
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.4
KOG3653	534	consensus Transforming growth factor beta/activin	99.4
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.4
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.4
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.39
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.39
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.39
PHA02988	283	hypothetical protein; Provisional	99.39
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.39
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.39
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.39
KOG0589	426	consensus Serine/threonine protein kinase [General	99.38
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.38
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.38
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.38
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.38
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.38
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.38
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.38
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.38
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.38
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.38
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.38
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.38
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.37
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.37
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.37
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.37
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.37
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.37
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.37
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.37
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.36
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.36
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.36
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.36
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.36
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.36
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.36
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.36
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.35
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.35
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.35
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.35
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.35
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.35
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.34
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.34
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.34
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.34
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.34
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.34
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.33
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.33
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.33
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.33
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.33
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.33
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.33
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.33
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.33
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.33
KOG0605	550	consensus NDR and related serine/threonine kinases	99.32
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.32
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.32
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.32
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.32
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.32
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.32
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.31
PTZ00036	440	glycogen synthase kinase; Provisional	99.31
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.31
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.31
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.31
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.31
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.31
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.3
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.3
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.3
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.3
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.3
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.3
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.3
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.29
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.29
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.29
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.29
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.29
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.29
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.29
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.29
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.28
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.28
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.28
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.28
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.28
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.28
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.28
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.27
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.27
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.27
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.27
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.27
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.27
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.27
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.26
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.26
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.26
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.26
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.26
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.26
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.26
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.25
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.25
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.25
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.25
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.25
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.25
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.25
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.25
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.25
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.25
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.24
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.24
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.24
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.24
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.24
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.24
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.24
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.24
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.23
KOG0584	632	consensus Serine/threonine protein kinase [General	99.23
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.23
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.23
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.23
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.23
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.23
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.23
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.22
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.22
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.22
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.21
KOG0586	596	consensus Serine/threonine protein kinase [General	99.21
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.21
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.21
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.21
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.21
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.21
PHA03212	391	serine/threonine kinase US3; Provisional	99.21
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.21
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.21
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.2
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.2
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.2
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.2
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.2
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.2
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.2
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.19
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.19
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.19
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.19
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.19
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.19
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.19
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.19
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.19
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.19
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.19
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.19
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.18
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.18
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.18
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.18
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.17
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.17
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.17
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.17
KOG0610	459	consensus Putative serine/threonine protein kinase	99.17
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.17
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.17
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.17
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.17
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.17
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.17
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.16
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.16
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.16
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.16
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.16
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.16
PHA03211	461	serine/threonine kinase US3; Provisional	99.16
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.16
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.15
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.15
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.15
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.15
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.15
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.15
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.15
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.14
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.14
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.14
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.14
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.14
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.14
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.14
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.14
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.13
PHA02882	294	putative serine/threonine kinase; Provisional	99.13
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.13
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.13
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.13
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.13
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.13
PHA03207	392	serine/threonine kinase US3; Provisional	99.13
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.13
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.13
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.13
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.12
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.12
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.12
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.12
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.12
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.12
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.12
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.12
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.12
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.12
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.12
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.11
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.11
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.11
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.11
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.11
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.1
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.1
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.1
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.1
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.1
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.1
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.1
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.1
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.1
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.1
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.09
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.09
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.09
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.09
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.09
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.09
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.09
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.09
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.09
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.09
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.08
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.08
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.08
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.08
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.08
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.08
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.08
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.08
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.08
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.08
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.08
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.08
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.07
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.07
PTZ00284	467	protein kinase; Provisional	99.07
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.06
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.06
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.06
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.06
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.06
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.06
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.06
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.05
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.05
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.05
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.05
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.05
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.05
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.05
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.05
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.04
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.04
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.04
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.04
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.04
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.04
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.03
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.03
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.03
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.02
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.02
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.02
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.02
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.02
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.02
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.02
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.02
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.02
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.01
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.01
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.01
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.01
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.0
PHA03209	357	serine/threonine kinase US3; Provisional	99.0
PTZ00024	335	cyclin-dependent protein kinase; Provisional	98.99
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	98.99
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	98.99
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	98.99
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	98.99
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	98.99
KOG4717	864	consensus Serine/threonine protein kinase [Signal	98.98
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	98.97
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	98.97
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	98.97
PLN00009	294	cyclin-dependent kinase A; Provisional	98.97
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	98.96
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	98.95
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	98.95
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	98.94
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	98.94
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	98.94
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	98.93
PLN00181	793	protein SPA1-RELATED; Provisional	98.92
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	98.92
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	98.91
PRK09188	365	serine/threonine protein kinase; Provisional	98.91
PHA03210	501	serine/threonine kinase US3; Provisional	98.91
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	98.91
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	98.9
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	98.88
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	98.87
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	98.86
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	98.85
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	98.85
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	98.85
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	98.84
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	98.84
KOG0695	593	consensus Serine/threonine protein kinase [Signal	98.83
KOG0607	463	consensus MAP kinase-interacting kinase and relate	98.82
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	98.82
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	98.81
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	98.79
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	98.79
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	98.78
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	98.78
KOG1152	772	consensus Signal transduction serine/threonine kin	98.76
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	98.74
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	98.71
PLN03224	507	probable serine/threonine protein kinase; Provisio	98.71
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	98.7
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	98.66
KOG0576	829	consensus Mitogen-activated protein kinase kinase	98.59
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	98.59
PRK12274	218	serine/threonine protein kinase; Provisional	98.57
smart00090	237	RIO RIO-like kinase.	98.54
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	98.54
PRK09605	535	bifunctional UGMP family protein/serine/threonine	98.5
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	98.46
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	98.4
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	98.34
PRK14879	211	serine/threonine protein kinase; Provisional	98.34
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	98.34
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	98.33
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	98.31
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	98.27
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	98.26
KOG1027	903	consensus Serine/threonine protein kinase and endo	98.24
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	98.17
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	98.11
KOG0590	601	consensus Checkpoint kinase and related serine/thr	98.08
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	98.08
PRK10345	210	hypothetical protein; Provisional	98.02
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	97.99
KOG1290	590	consensus Serine/threonine protein kinase [Signal	97.98
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	97.89
KOG1167	418	consensus Serine/threonine protein kinase of the C	97.84
COG0515	384	SPS1 Serine/threonine protein kinase [General func	97.8
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	97.76
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	97.72
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	97.71
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	97.69
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	97.58
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	97.54
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	97.42
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	97.39
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	97.18
KOG1266	458	consensus Protein kinase [Signal transduction mech	96.97
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	96.9
KOG3087	229	consensus Serine/threonine protein kinase [General	96.87
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	96.76
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	96.7
KOG0606	1205	consensus Microtubule-associated serine/threonine	96.4
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	96.13
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	96.11
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	96.09
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	95.78
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	95.77
PRK09902	216	hypothetical protein; Provisional	95.19
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	95.07
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	94.22
KOG1243	690	consensus Protein kinase [General function predict	93.96
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	93.52
COG0478	304	RIO-like serine/threonine protein kinase fused to	93.2
KOG0590	601	consensus Checkpoint kinase and related serine/thr	93.03
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	91.9
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	90.72
KOG2137	700	consensus Protein kinase [Signal transduction mech	90.25
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	87.05
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	85.92
PF01636	239	APH: Phosphotransferase enzyme family This family	83.76
COG0661	517	AarF Predicted unusual protein kinase [General fun	83.04
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	81.39
PRK05231	319	homoserine kinase; Provisional	81.07
COG4248	637	Uncharacterized protein with protein kinase and he	80.52
KOG1235	538	consensus Predicted unusual protein kinase [Genera	80.33

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=1.3e-23  Score=152.00  Aligned_cols=132  Identities=33%  Similarity=0.546  Sum_probs=106.3

Q ss_pred             hheeeeeCCCccc----------ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           11 LYLIFDVDPIRRF----------ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        11 ~~lv~e~~~~~~~----------~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+|||||+++++.          +|+|.+|.+|+.++|.|+.|||..+.++++|+|++++||+++.++..|++|||+++.
T Consensus       147 ~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~  226 (361)
T KOG1187|consen  147 RLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKL  226 (361)
T ss_pred             EEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCccCccc
Confidence            6899999988542          899999999999999999999999998999999999999999999999999999866


Q ss_pred             eec-Ccccc--------------------cccccccchh---------------------------hhhhhhcCCcceee
Q 043694           81 FVK-DDLEA--------------------NTNRIVGTQE---------------------------SYNLWKDGKGRKLM  112 (142)
Q Consensus        81 ~~~-~~~~~--------------------~~~~~~g~~~---------------------------~~~~~~~~~~~~~~  112 (142)
                      ... .....                    +....+.++|                           ++..+..+.+.+++
T Consensus       227 ~~~~~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~~~~eii  306 (361)
T KOG1187|consen  227 GPEGDTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLEEGKLREIV  306 (361)
T ss_pred             CCccccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHHCcchhhee
Confidence            543 11100                    0112222333                           34556677899999


Q ss_pred             cCCCC-CCCCH-HHHHHHHHHHHhccCccCCC
Q 043694          113 DPSLD-DTHSS-WKLLTCLQIALLCVQENSND  142 (142)
Q Consensus       113 d~~~~-~~~~~-~~~~~~~~i~~~C~~~~p~~  142 (142)
                      |+++. +.++. .++.+++++|.+|++++|++
T Consensus       307 D~~l~~~~~~~~~~~~~~~~~a~~C~~~~~~~  338 (361)
T KOG1187|consen  307 DPRLKEGEYPDEKEVKKLAELALRCLRPDPKE  338 (361)
T ss_pred             CCCccCCCCChHHHHHHHHHHHHHHcCcCCCc
Confidence            99997 66665 79999999999999999853

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.76  E-value=4.9e-19  Score=129.50  Aligned_cols=130  Identities=28%  Similarity=0.422  Sum_probs=101.5

Q ss_pred             hhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      .+|+|+||++++          ...++-.+.+.++.||+.|+.||.++.   +|||||.++||+++.+..+||+|||+++
T Consensus       275 piyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~---~IHRDLAARNiLV~~~~~vKIsDFGLAr  351 (468)
T KOG0197|consen  275 PIYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESKN---YIHRDLAARNILVDEDLVVKISDFGLAR  351 (468)
T ss_pred             ceEEEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhCC---ccchhhhhhheeeccCceEEEccccccc
Confidence            389999998775          355889999999999999999999999   9999999999999999999999999999


Q ss_pred             eeecCccccc---------------------ccccccchh--hhhhhhcC----------CcceeecCCCCCCCCHHHHH
Q 043694           80 IFVKDDLEAN---------------------TNRIVGTQE--SYNLWKDG----------KGRKLMDPSLDDTHSSWKLL  126 (142)
Q Consensus        80 ~~~~~~~~~~---------------------~~~~~g~~~--~~~~~~~~----------~~~~~~d~~~~~~~~~~~~~  126 (142)
                      ...+..+...                     ..+.+.++|  .|+..+.|          ...+.++.+.+...+..++.
T Consensus       352 ~~~d~~Y~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn~ev~~~le~GyRlp~P~~CP~  431 (468)
T KOG0197|consen  352 LIGDDEYTASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMSNEEVLELLERGYRLPRPEGCPD  431 (468)
T ss_pred             ccCCCceeecCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCCHHHHHHHHhccCcCCCCCCCCH
Confidence            5443332111                     122333333  23333333          34566677788888999999


Q ss_pred             HHHHHHHhccCccCCC
Q 043694          127 TCLQIALLCVQENSND  142 (142)
Q Consensus       127 ~~~~i~~~C~~~~p~~  142 (142)
                      .+.+|+..||..+|++
T Consensus       432 ~vY~lM~~CW~~~P~~  447 (468)
T KOG0197|consen  432 EVYELMKSCWHEDPED  447 (468)
T ss_pred             HHHHHHHHHhhCCccc
Confidence            9999999999999975

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=5.7e-17  Score=118.60  Aligned_cols=127  Identities=27%  Similarity=0.401  Sum_probs=94.7

Q ss_pred             HhhhheeeeeCCC--------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            8 QLYLYLIFDVDPI--------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         8 ~~~~~lv~e~~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      .-.+|||+||++.        ....|+..++..++.|++.|+.|||+++   ++|||++.+||+++.++..|++|||+++
T Consensus       190 ~~siYlVFeYMdhDL~GLl~~p~vkft~~qIKc~mkQLl~Gl~~cH~~g---vlHRDIK~SNiLidn~G~LKiaDFGLAr  266 (560)
T KOG0600|consen  190 SGSIYLVFEYMDHDLSGLLSSPGVKFTEPQIKCYMKQLLEGLEYCHSRG---VLHRDIKGSNILIDNNGVLKIADFGLAR  266 (560)
T ss_pred             CceEEEEEecccchhhhhhcCCCcccChHHHHHHHHHHHHHHHHHhhcC---eeeccccccceEEcCCCCEEecccccee
Confidence            3468999999664        3456999999999999999999999999   9999999999999999999999999999


Q ss_pred             eeecCcccccccc----cccchh----------hhhhhhcCCcc-eeec--CCCCCCCCHHHHHHHHHHHHhccCccC
Q 043694           80 IFVKDDLEANTNR----IVGTQE----------SYNLWKDGKGR-KLMD--PSLDDTHSSWKLLTCLQIALLCVQENS  140 (142)
Q Consensus        80 ~~~~~~~~~~~~~----~~g~~~----------~~~~~~~~~~~-~~~d--~~~~~~~~~~~~~~~~~i~~~C~~~~p  140 (142)
                      ++.......-+++    .+..|+          +.+.|+.|-+. +++.  |-+.|....+++..+.++   |-.+.+
T Consensus       267 ~y~~~~~~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfkl---cGSP~e  341 (560)
T KOG0600|consen  267 FYTPSGSAPYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFKL---CGSPTE  341 (560)
T ss_pred             eccCCCCcccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHH---hCCCCh
Confidence            8876553221221    122222          78899888754 3333  445555555666666655   665543

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.67  E-value=1.4e-16  Score=113.95  Aligned_cols=94  Identities=28%  Similarity=0.411  Sum_probs=78.1

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC------CceEEec
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED------LKSKISD   74 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~------~~~~l~~   74 (142)
                      .+.|||||||.++.        ..+++.+...++.|++.|+++||+..   |+|||++|.||+++.+      -..|++|
T Consensus        82 ~~i~lVMEyC~gGDLs~yi~~~~~l~e~t~r~Fm~QLA~alq~L~~~~---IiHRDLKPQNiLLs~~~~~~~~~~LKIAD  158 (429)
T KOG0595|consen   82 DFIYLVMEYCNGGDLSDYIRRRGRLPEATARHFMQQLASALQFLHENN---IIHRDLKPQNILLSTTARNDTSPVLKIAD  158 (429)
T ss_pred             CeEEEEEEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCCcceEEeccCCCCCCCceEEecc
Confidence            47999999999764        46999999999999999999999999   9999999999999764      4689999


Q ss_pred             ccceeeeecCcccccccccccchh--hhhhhhcCCc
Q 043694           75 FGLARIFVKDDLEANTNRIVGTQE--SYNLWKDGKG  108 (142)
Q Consensus        75 fg~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~  108 (142)
                      ||+++.+..+..   ..+.+|+|-  +.++|...++
T Consensus       159 FGfAR~L~~~~~---a~tlcGSplYMAPEV~~~~~Y  191 (429)
T KOG0595|consen  159 FGFARFLQPGSM---AETLCGSPLYMAPEVIMSQQY  191 (429)
T ss_pred             cchhhhCCchhH---HHHhhCCccccCHHHHHhccc
Confidence            999999875543   445788877  6666644433

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.63  E-value=2.6e-15  Score=108.75  Aligned_cols=72  Identities=36%  Similarity=0.485  Sum_probs=64.3

Q ss_pred             hhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC-ceEEecccce
Q 043694           10 YLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL-KSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~-~~~l~~fg~~   78 (142)
                      .+.+|+||++++          ...+++..++.++.+|+.|+.|||+...  ++|+|+++.|++++.+. .+||+|||++
T Consensus       114 ~~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~~~--iIHrDLK~~NiLv~~~~~~~KI~DFGls  191 (362)
T KOG0192|consen  114 SLCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSEGP--IIHRDLKSDNILVDLKGKTLKIADFGLS  191 (362)
T ss_pred             ceEEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCC--eeecccChhhEEEcCCCCEEEECCCccc
Confidence            367999998874          3579999999999999999999999874  89999999999999997 9999999999


Q ss_pred             eeeec
Q 043694           79 RIFVK   83 (142)
Q Consensus        79 ~~~~~   83 (142)
                      +....
T Consensus       192 r~~~~  196 (362)
T KOG0192|consen  192 REKVI  196 (362)
T ss_pred             eeecc
Confidence            87653

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=3.5e-15  Score=111.18  Aligned_cols=100  Identities=27%  Similarity=0.442  Sum_probs=84.8

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.|+|.|.|++++        .+|++..+..++.||+.|+.|||+..   |+|||++..|++++.+..+||+|||++..
T Consensus        91 ~nVYivLELC~~~sL~el~Krrk~ltEpEary~l~QIv~GlkYLH~~~---IiHRDLKLGNlfL~~~~~VKIgDFGLAt~  167 (592)
T KOG0575|consen   91 NNVYIVLELCHRGSLMELLKRRKPLTEPEARYFLRQIVEGLKYLHSLG---IIHRDLKLGNLFLNENMNVKIGDFGLATQ  167 (592)
T ss_pred             CceEEEEEecCCccHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcC---ceecccchhheeecCcCcEEecccceeee
Confidence            46899999999854        67999999999999999999999999   99999999999999999999999999998


Q ss_pred             eecCcccccccccccchh--------------hhhhhhcCCcceeec
Q 043694           81 FVKDDLEANTNRIVGTQE--------------SYNLWKDGKGRKLMD  113 (142)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~~~~d  113 (142)
                      +......  ..+.||||.              ..+.|+.|-+.+.+-
T Consensus       168 le~~~Er--k~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL  212 (592)
T KOG0575|consen  168 LEYDGER--KKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLL  212 (592)
T ss_pred             ecCcccc--cceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhh
Confidence            8644322  234788877              678898887665553

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.60  E-value=1.6e-15  Score=107.30  Aligned_cols=95  Identities=33%  Similarity=0.393  Sum_probs=79.7

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+|||+||..++        .+.|++.++..++.+|+.|+.|||+.+   |+|||++|.||+++..+.++++|||+++..
T Consensus        99 kLylVld~~~GGeLf~hL~~eg~F~E~~arfYlaEi~lAL~~LH~~g---IiyRDlKPENILLd~~GHi~LtDFgL~k~~  175 (357)
T KOG0598|consen   99 KLYLVLDYLNGGELFYHLQREGRFSEDRARFYLAEIVLALGYLHSKG---IIYRDLKPENILLDEQGHIKLTDFGLCKED  175 (357)
T ss_pred             eEEEEEeccCCccHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHhCC---eeeccCCHHHeeecCCCcEEEeccccchhc
Confidence            589999999885        366999999999999999999999999   999999999999999999999999999865


Q ss_pred             ecCcccccccccccchh--------------hhhhhhcCCcc
Q 043694           82 VKDDLEANTNRIVGTQE--------------SYNLWKDGKGR  109 (142)
Q Consensus        82 ~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~  109 (142)
                      .....  .+...+||+.              +.+.|+.|-+.
T Consensus       176 ~~~~~--~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGill  215 (357)
T KOG0598|consen  176 LKDGD--ATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILL  215 (357)
T ss_pred             ccCCC--ccccccCCccccChHHHhcCCCCcccchHhHHHHH
Confidence            54332  2445788877              66777777543

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.60  E-value=1.5e-15  Score=110.65  Aligned_cols=119  Identities=24%  Similarity=0.338  Sum_probs=95.9

Q ss_pred             hhheeeeeCC--------CcccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDP--------IRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~--------~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+|+||||++        .....|++..+..|+.||.+|+.|+|..+   +.|||+++.||++..+..+|++|||++|.+
T Consensus        84 ~L~fVfE~Md~NLYqLmK~R~r~fse~~irnim~QilqGL~hiHk~G---fFHRDlKPENiLi~~~~~iKiaDFGLARev  160 (538)
T KOG0661|consen   84 ILYFVFEFMDCNLYQLMKDRNRLFSESDIRNIMYQILQGLAHIHKHG---FFHRDLKPENILISGNDVIKIADFGLAREV  160 (538)
T ss_pred             eEeeeHHhhhhhHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHhcC---cccccCChhheEecccceeEeccccccccc
Confidence            5788888854        35788999999999999999999999999   999999999999999999999999999998


Q ss_pred             ecCcccc--cccccccchh----------hhhhhhcCCcc---eeecCCCCCCCCHHHHHHHHHH
Q 043694           82 VKDDLEA--NTNRIVGTQE----------SYNLWKDGKGR---KLMDPSLDDTHSSWKLLTCLQI  131 (142)
Q Consensus        82 ~~~~~~~--~~~~~~g~~~----------~~~~~~~~~~~---~~~d~~~~~~~~~~~~~~~~~i  131 (142)
                      .......  .+++...+|+          ..+.|.-|.+.   ..+.|-..|.-..|++.++.+|
T Consensus       161 ~SkpPYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~V  225 (538)
T KOG0661|consen  161 RSKPPYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEV  225 (538)
T ss_pred             ccCCCcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHH
Confidence            7665432  2344555555          78889888654   3445666677777888887776

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.60  E-value=1.5e-15  Score=114.53  Aligned_cols=128  Identities=22%  Similarity=0.322  Sum_probs=101.1

Q ss_pred             hhhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694            9 LYLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus         9 ~~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      -++|+||||..++.       ..|++.+...++.+|+.||+|||+.+   ||+||++..||+++..+.+|++|||+++..
T Consensus       442 ~~l~fvmey~~Ggdm~~~~~~~~F~e~rarfyaAev~l~L~fLH~~~---IIYRDlKLdNiLLD~eGh~kiADFGlcKe~  518 (694)
T KOG0694|consen  442 EHLFFVMEYVAGGDLMHHIHTDVFSEPRARFYAAEVVLGLQFLHENG---IIYRDLKLDNLLLDTEGHVKIADFGLCKEG  518 (694)
T ss_pred             CeEEEEEEecCCCcEEEEEecccccHHHHHHHHHHHHHHHHHHHhcC---ceeeecchhheEEcccCcEEeccccccccc
Confidence            46899999988764       55999999999999999999999999   999999999999999999999999999876


Q ss_pred             ecCcccccccccccchh--------------hhhhhhcCC----------------cceeecCCCC--CCCCHHHHHHHH
Q 043694           82 VKDDLEANTNRIVGTQE--------------SYNLWKDGK----------------GRKLMDPSLD--DTHSSWKLLTCL  129 (142)
Q Consensus        82 ~~~~~~~~~~~~~g~~~--------------~~~~~~~~~----------------~~~~~d~~~~--~~~~~~~~~~~~  129 (142)
                      .....  .++++||||.              +.+.|..|.                ..+++|+-+.  ..|+.+...+.+
T Consensus       519 m~~g~--~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEee~FdsI~~d~~~yP~~ls~ea~  596 (694)
T KOG0694|consen  519 MGQGD--RTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEEEVFDSIVNDEVRYPRFLSKEAI  596 (694)
T ss_pred             CCCCC--ccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHhcCCCCCCCcccHHHH
Confidence            53322  3566899987              667776553                3344444433  235666677778


Q ss_pred             HHHHhccCccCC
Q 043694          130 QIALLCVQENSN  141 (142)
Q Consensus       130 ~i~~~C~~~~p~  141 (142)
                      .|+.+-+..+|+
T Consensus       597 ~il~~ll~k~p~  608 (694)
T KOG0694|consen  597 AIMRRLLRKNPE  608 (694)
T ss_pred             HHHHHHhccCcc
Confidence            888877777775

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=8.6e-16  Score=105.92  Aligned_cols=129  Identities=19%  Similarity=0.283  Sum_probs=94.0

Q ss_pred             hheeeeeCCCcc------------cccCHHHHHHHHHHHHHHhhhhhccCC-CceEecccCCCcEEeCCCCceEEecccc
Q 043694           11 LYLIFDVDPIRR------------FILDWKTCIHIIQGITQGLLYLQEYSK-LIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus        11 ~~lv~e~~~~~~------------~~l~~~~~~~~~~~i~~~l~~lh~~~~-~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      +|+|||+|..+.            ..+++++++++..|++.|+.++|...+ ..++|||++|.||+++.++..|++|||+
T Consensus        95 lnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL  174 (375)
T KOG0591|consen   95 LNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGL  174 (375)
T ss_pred             hHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchh
Confidence            789999988754            449999999999999999999998331 2489999999999999999999999999


Q ss_pred             eeeeecCcccccccccccchh--------------hhhhhhcCCcceee---cCCC------------C-CCC---C-HH
Q 043694           78 ARIFVKDDLEANTNRIVGTQE--------------SYNLWKDGKGRKLM---DPSL------------D-DTH---S-SW  123 (142)
Q Consensus        78 ~~~~~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~~~~---d~~~------------~-~~~---~-~~  123 (142)
                      ++++......  ..+.+|||.              -.+.|+.|-+..-+   .+..            . +++   + ..
T Consensus       175 ~r~l~s~~tf--A~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n~~~L~~KI~qgd~~~~p~~~  252 (375)
T KOG0591|consen  175 GRFLSSKTTF--AHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGDNLLSLCKKIEQGDYPPLPDEH  252 (375)
T ss_pred             HhHhcchhHH--HHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHcCCCCCCcHHH
Confidence            9998765432  345788877              45677666322111   1111            0 122   1 33


Q ss_pred             HHHHHHHHHHhccCccCC
Q 043694          124 KLLTCLQIALLCVQENSN  141 (142)
Q Consensus       124 ~~~~~~~i~~~C~~~~p~  141 (142)
                      -...+-+|+-.|+..||+
T Consensus       253 YS~~l~~li~~ci~vd~~  270 (375)
T KOG0591|consen  253 YSTDLRELINMCIAVDPE  270 (375)
T ss_pred             hhhHHHHHHHHHccCCcc
Confidence            346677777889888875

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.60  E-value=2.4e-15  Score=104.14  Aligned_cols=99  Identities=28%  Similarity=0.363  Sum_probs=83.2

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ++|+||||.+++.        ..|+++....++.+|+.|+.|+|+..   +++||++|.|+++++++.+|+.|||++..+
T Consensus       118 ~lymvmeyv~GGElFS~Lrk~~rF~e~~arFYAAeivlAleylH~~~---iiYRDLKPENiLlD~~G~iKitDFGFAK~v  194 (355)
T KOG0616|consen  118 NLYMVMEYVPGGELFSYLRKSGRFSEPHARFYAAEIVLALEYLHSLD---IIYRDLKPENLLLDQNGHIKITDFGFAKRV  194 (355)
T ss_pred             eEEEEEeccCCccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHhcC---eeeccCChHHeeeccCCcEEEEeccceEEe
Confidence            6999999988754        56999999999999999999999999   999999999999999999999999999987


Q ss_pred             ecCcccccccccccchh--------------hhhhhhcCCcceeecCCC
Q 043694           82 VKDDLEANTNRIVGTQE--------------SYNLWKDGKGRKLMDPSL  116 (142)
Q Consensus        82 ~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~~~~d~~~  116 (142)
                      ...     +-+.||||.              +.+.|..|.+..-+-.+.
T Consensus       195 ~~r-----T~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~  238 (355)
T KOG0616|consen  195 SGR-----TWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGY  238 (355)
T ss_pred             cCc-----EEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCC
Confidence            643     334677766              777888876555444444

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.60  E-value=9.1e-16  Score=108.58  Aligned_cols=71  Identities=28%  Similarity=0.422  Sum_probs=63.5

Q ss_pred             hheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhc-cCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           11 LYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQE-YSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        11 ~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+++|||+.+++        +.+++....+++.++++|+.|||. ..   ++|||+||+|+++...+.+|++|||.+..+
T Consensus       153 isI~mEYMDgGSLd~~~k~~g~i~E~~L~~ia~~VL~GL~YLh~~~~---IIHRDIKPsNlLvNskGeVKicDFGVS~~l  229 (364)
T KOG0581|consen  153 ISICMEYMDGGSLDDILKRVGRIPEPVLGKIARAVLRGLSYLHEERK---IIHRDIKPSNLLVNSKGEVKICDFGVSGIL  229 (364)
T ss_pred             EEeehhhcCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhccC---eeeccCCHHHeeeccCCCEEeccccccHHh
Confidence            678899998765        448999999999999999999996 66   999999999999999999999999999877


Q ss_pred             ecC
Q 043694           82 VKD   84 (142)
Q Consensus        82 ~~~   84 (142)
                      ...
T Consensus       230 vnS  232 (364)
T KOG0581|consen  230 VNS  232 (364)
T ss_pred             hhh
Confidence            654

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.59  E-value=4.5e-15  Score=103.28  Aligned_cols=116  Identities=21%  Similarity=0.283  Sum_probs=83.6

Q ss_pred             hhheeeeeCCC--------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPI--------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .++||+||++.        ...-++...+.+++.|++.|+.|+|+..   ++|||++|.||++.+++..|++|||+++.+
T Consensus        75 klhLVFE~~dhTvL~eLe~~p~G~~~~~vk~~l~Q~l~ai~~cHk~n---~IHRDIKPENILit~~gvvKLCDFGFAR~L  151 (396)
T KOG0593|consen   75 KLHLVFEYCDHTVLHELERYPNGVPSELVKKYLYQLLKAIHFCHKNN---CIHRDIKPENILITQNGVVKLCDFGFARTL  151 (396)
T ss_pred             eeEEEeeecchHHHHHHHhccCCCCHHHHHHHHHHHHHHhhhhhhcC---eecccCChhheEEecCCcEEeccchhhHhh
Confidence            48999999764        2334899999999999999999999999   999999999999999999999999999998


Q ss_pred             ec-Ccccc--cccccccchh----------hhhhhhcCCc-ceeec--CCCCCCCCHHHHHHH
Q 043694           82 VK-DDLEA--NTNRIVGTQE----------SYNLWKDGKG-RKLMD--PSLDDTHSSWKLLTC  128 (142)
Q Consensus        82 ~~-~~~~~--~~~~~~g~~~----------~~~~~~~~~~-~~~~d--~~~~~~~~~~~~~~~  128 (142)
                      .. +....  ...+...+|+          +.+.|.-|-+ .++++  |-..|+.+.|++-.+
T Consensus       152 ~~pgd~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I  214 (396)
T KOG0593|consen  152 SAPGDNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLI  214 (396)
T ss_pred             cCCcchhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHH
Confidence            74 22111  1222333333          6677776653 23333  333455566555443

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=1.2e-15  Score=117.12  Aligned_cols=130  Identities=24%  Similarity=0.282  Sum_probs=97.8

Q ss_pred             hhheeeeeCCCc----------------------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC
Q 043694           10 YLYLIFDVDPIR----------------------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED   67 (142)
Q Consensus        10 ~~~lv~e~~~~~----------------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~   67 (142)
                      .+|+|+||+..+                      ..+|+..+.+.++.|||.|+.||.+..   ++||||.++|++++.+
T Consensus       563 P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~---FVHRDLATRNCLVge~  639 (774)
T KOG1026|consen  563 PLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHH---FVHRDLATRNCLVGEN  639 (774)
T ss_pred             eeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCc---ccccchhhhhceeccc
Confidence            489999996542                      234999999999999999999999988   9999999999999999


Q ss_pred             CceEEecccceeeeecCcccccc----------------------cccccchh--hhhhhhcC----------Ccceeec
Q 043694           68 LKSKISDFGLARIFVKDDLEANT----------------------NRIVGTQE--SYNLWKDG----------KGRKLMD  113 (142)
Q Consensus        68 ~~~~l~~fg~~~~~~~~~~~~~~----------------------~~~~g~~~--~~~~~~~~----------~~~~~~d  113 (142)
                      ..+||+|||+++.+...++....                      .+.+.++|  .|+.|+-|          ...+.+.
T Consensus       640 l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~EVIe~i~  719 (774)
T KOG1026|consen  640 LVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQEVIECIR  719 (774)
T ss_pred             eEEEecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccchHHHHHHHH
Confidence            99999999999987665543322                      12222333  34444333          2333333


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhccCccCCC
Q 043694          114 PSLDDTHSSWKLLTCLQIALLCVQENSND  142 (142)
Q Consensus       114 ~~~~~~~~~~~~~~~~~i~~~C~~~~p~~  142 (142)
                      .+---..+++++.++.+|+..||+++|.+
T Consensus       720 ~g~lL~~Pe~CP~~vY~LM~~CW~~~P~~  748 (774)
T KOG1026|consen  720 AGQLLSCPENCPTEVYSLMLECWNENPKR  748 (774)
T ss_pred             cCCcccCCCCCCHHHHHHHHHHhhcCccc
Confidence            33225678889999999999999999975

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=3.1e-15  Score=107.40  Aligned_cols=101  Identities=24%  Similarity=0.331  Sum_probs=82.5

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC---CceEEecccc
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED---LKSKISDFGL   77 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~---~~~~l~~fg~   77 (142)
                      .+.|+|+||.+++.        ..+++..-..++.|++.|+.|||+++   |+|||++|.||++..+   ...|++|||+
T Consensus       249 ds~YmVlE~v~GGeLfd~vv~nk~l~ed~~K~~f~Qll~avkYLH~~G---I~HRDiKPeNILl~~~~e~~llKItDFGl  325 (475)
T KOG0615|consen  249 DSSYMVLEYVEGGELFDKVVANKYLREDLGKLLFKQLLTAVKYLHSQG---IIHRDIKPENILLSNDAEDCLLKITDFGL  325 (475)
T ss_pred             CceEEEEEEecCccHHHHHHhccccccchhHHHHHHHHHHHHHHHHcC---cccccCCcceEEeccCCcceEEEecccch
Confidence            36899999998864        55888888889999999999999999   9999999999999866   6799999999


Q ss_pred             eeeeecCcccccccccccchh-----------------hhhhhhcCCcceeecCC
Q 043694           78 ARIFVKDDLEANTNRIVGTQE-----------------SYNLWKDGKGRKLMDPS  115 (142)
Q Consensus        78 ~~~~~~~~~~~~~~~~~g~~~-----------------~~~~~~~~~~~~~~d~~  115 (142)
                      ++......   ...+.|||+.                 ..+.|+.|.+..+.-.+
T Consensus       326 AK~~g~~s---fm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG  377 (475)
T KOG0615|consen  326 AKVSGEGS---FMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSG  377 (475)
T ss_pred             hhccccce---ehhhhcCCccccChhheecCCeecccchheeeeccceEEEEecc
Confidence            99875332   2455777766                 45889888777666533

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.57  E-value=1e-14  Score=106.44  Aligned_cols=100  Identities=31%  Similarity=0.477  Sum_probs=78.9

Q ss_pred             hhheeeeeCCCcc-------cc-cCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR-------FI-LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~-------~~-l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ++|||+||+..+.       .+ |++.+.++++.+++.|+.|||.++   ++|||++++|++++.++.+||+|||.+...
T Consensus       184 ~~YlVley~s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH~Qg---iiHRDIKPsNLLl~~~g~VKIsDFGVs~~~  260 (576)
T KOG0585|consen  184 KLYLVLEYCSKGEVKWCPPDKPELSEQQARKYLRDVVLGLEYLHYQG---IIHRDIKPSNLLLSSDGTVKISDFGVSNEF  260 (576)
T ss_pred             ceEEEEEeccCCccccCCCCcccccHHHHHHHHHHHHHHHHHHHhcC---eeccccchhheEEcCCCcEEeeccceeeec
Confidence            5999999988643       33 999999999999999999999999   999999999999999999999999998876


Q ss_pred             ecCcccc---cccccccchh------------------hhhhhhcCCcceee
Q 043694           82 VKDDLEA---NTNRIVGTQE------------------SYNLWKDGKGRKLM  112 (142)
Q Consensus        82 ~~~~~~~---~~~~~~g~~~------------------~~~~~~~~~~~~~~  112 (142)
                      ..+....   .....+|||.                  +.+.|+.|.-.+++
T Consensus       261 ~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCl  312 (576)
T KOG0585|consen  261 PQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCL  312 (576)
T ss_pred             ccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHh
Confidence            4432211   1223555544                  78888877544333

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.57  E-value=2.1e-15  Score=103.88  Aligned_cols=84  Identities=33%  Similarity=0.605  Sum_probs=72.6

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      -++|+|+|.++.+.        ..+|++....++.|+..|+.|+|...   |+|+|+++.||+++++..++++|||++..
T Consensus        96 sF~FlVFdl~prGELFDyLts~VtlSEK~tR~iMrqlfegVeylHa~~---IVHRDLKpENILlddn~~i~isDFGFa~~  172 (411)
T KOG0599|consen   96 AFVFLVFDLMPRGELFDYLTSKVTLSEKETRRIMRQLFEGVEYLHARN---IVHRDLKPENILLDDNMNIKISDFGFACQ  172 (411)
T ss_pred             chhhhhhhhcccchHHHHhhhheeecHHHHHHHHHHHHHHHHHHHHhh---hhhcccChhheeeccccceEEeccceeec
Confidence            36888999887653        45999999999999999999999999   99999999999999999999999999998


Q ss_pred             eecCcccccccccccchh
Q 043694           81 FVKDDLEANTNRIVGTQE   98 (142)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~   98 (142)
                      +..+..   ....||+|+
T Consensus       173 l~~Gek---LrelCGTPg  187 (411)
T KOG0599|consen  173 LEPGEK---LRELCGTPG  187 (411)
T ss_pred             cCCchh---HHHhcCCCc
Confidence            876653   334677777

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.57  E-value=9.4e-15  Score=108.13  Aligned_cols=98  Identities=26%  Similarity=0.447  Sum_probs=81.1

Q ss_pred             hheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeeec
Q 043694           11 LYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVK   83 (142)
Q Consensus        11 ~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~~   83 (142)
                      ++.||||++++.       ..+++.++..++.++++||.|||.++   ++|+|+++.||+++.++..|++|||++..+..
T Consensus       345 LWVVMEym~ggsLTDvVt~~~~~E~qIA~Icre~l~aL~fLH~~g---IiHrDIKSDnILL~~~g~vKltDFGFcaqi~~  421 (550)
T KOG0578|consen  345 LWVVMEYMEGGSLTDVVTKTRMTEGQIAAICREILQGLKFLHARG---IIHRDIKSDNILLTMDGSVKLTDFGFCAQISE  421 (550)
T ss_pred             eEEEEeecCCCchhhhhhcccccHHHHHHHHHHHHHHHHHHHhcc---eeeeccccceeEeccCCcEEEeeeeeeecccc
Confidence            778899998865       33899999999999999999999999   99999999999999999999999999998876


Q ss_pred             Ccccccccccccchh--------------hhhhhhcCC-cceeec
Q 043694           84 DDLEANTNRIVGTQE--------------SYNLWKDGK-GRKLMD  113 (142)
Q Consensus        84 ~~~~~~~~~~~g~~~--------------~~~~~~~~~-~~~~~d  113 (142)
                      ....  ....+|||+              -.+.|+.|- ..++++
T Consensus       422 ~~~K--R~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMve  464 (550)
T KOG0578|consen  422 EQSK--RSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVE  464 (550)
T ss_pred             ccCc--cccccCCCCccchhhhhhcccCccccchhhhhHHHHHhc
Confidence            6543  344788877              466777664 234444

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.54  E-value=8.6e-15  Score=102.97  Aligned_cols=119  Identities=21%  Similarity=0.264  Sum_probs=91.5

Q ss_pred             hhheeeeeCCC--------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPI--------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+||||++.        -..+|+..++..++.|++.|+.|||..+   ++|||++++|+++...+..|++|||+++.+
T Consensus       151 ~iy~VMe~~EhDLksl~d~m~q~F~~~evK~L~~QlL~glk~lH~~w---ilHRDLK~SNLLm~~~G~lKiaDFGLAR~y  227 (419)
T KOG0663|consen  151 KIYIVMEYVEHDLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLHDNW---ILHRDLKTSNLLLSHKGILKIADFGLAREY  227 (419)
T ss_pred             eeeeeHHHHHhhHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhhce---eEecccchhheeeccCCcEEecccchhhhh
Confidence            38999999764        2356999999999999999999999999   999999999999999999999999999988


Q ss_pred             ecCcccccc---cccccchh----------hhhhhhcCCccee-e--cCCCCCCCCHHHHHHHHHH
Q 043694           82 VKDDLEANT---NRIVGTQE----------SYNLWKDGKGRKL-M--DPSLDDTHSSWKLLTCLQI  131 (142)
Q Consensus        82 ~~~~~~~~~---~~~~g~~~----------~~~~~~~~~~~~~-~--d~~~~~~~~~~~~~~~~~i  131 (142)
                      ......-+.   ...+.+|+          +.+.|+-|-+..- +  .|-+.|+...+++..+.++
T Consensus       228 gsp~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl~~If~l  293 (419)
T KOG0663|consen  228 GSPLKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQLDKIFKL  293 (419)
T ss_pred             cCCcccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHH
Confidence            765321111   11222222          8899998875432 2  2455677888888888765

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.54  E-value=6.6e-14  Score=101.49  Aligned_cols=89  Identities=28%  Similarity=0.339  Sum_probs=73.3

Q ss_pred             hhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhh-----ccCCCceEecccCCCcEEeCCCCceEEecccc
Q 043694           10 YLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQ-----EYSKLIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh-----~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      .++||.||.+.++       ..++-...++++..+++|+.|||     ++++|.+.|||+++.||++.+++.+.|+|+|+
T Consensus       283 QLwLvTdYHe~GSL~DyL~r~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGL  362 (513)
T KOG2052|consen  283 QLWLVTDYHEHGSLYDYLNRNTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL  362 (513)
T ss_pred             EEEEeeecccCCcHHHHHhhccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeecee
Confidence            3899999988765       45999999999999999999999     46889999999999999999999999999999


Q ss_pred             eeeeecCccc--ccccccccchh
Q 043694           78 ARIFVKDDLE--ANTNRIVGTQE   98 (142)
Q Consensus        78 ~~~~~~~~~~--~~~~~~~g~~~   98 (142)
                      +-........  ...+..+||.+
T Consensus       363 Av~h~~~t~~idi~~N~rVGTKR  385 (513)
T KOG2052|consen  363 AVRHDSDTDTIDIPPNPRVGTKR  385 (513)
T ss_pred             eEEecccCCcccCCCCCccceee
Confidence            9776544211  12445677655

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.54  E-value=1.8e-14  Score=106.47  Aligned_cols=72  Identities=36%  Similarity=0.522  Sum_probs=66.5

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+|+|+||+++|.        +.|++.-...++.+|+.|++|+|+.+   |||||+++.||+++.++.++|+|||.+..+
T Consensus       148 sLYFvLe~A~nGdll~~i~K~Gsfde~caR~YAAeIldAleylH~~G---IIHRDlKPENILLd~dmhikITDFGsAK~l  224 (604)
T KOG0592|consen  148 SLYFVLEYAPNGDLLDLIKKYGSFDETCARFYAAEILDALEYLHSNG---IIHRDLKPENILLDKDGHIKITDFGSAKIL  224 (604)
T ss_pred             ceEEEEEecCCCcHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC---ceeccCChhheeEcCCCcEEEeeccccccC
Confidence            5899999999865        56999999999999999999999999   999999999999999999999999999887


Q ss_pred             ecC
Q 043694           82 VKD   84 (142)
Q Consensus        82 ~~~   84 (142)
                      ...
T Consensus       225 ~~~  227 (604)
T KOG0592|consen  225 SPS  227 (604)
T ss_pred             Chh
Confidence            643

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.53  E-value=3.5e-14  Score=97.14  Aligned_cols=118  Identities=27%  Similarity=0.396  Sum_probs=91.6

Q ss_pred             hheeeeeCCC--------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           11 LYLIFDVDPI--------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        11 ~~lv~e~~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      +-+|+||++.        +...|+..++..++.++.+|+.|||..+   ++|||+++.|++++.++..|++|||+++.+.
T Consensus        76 l~lVfEfm~tdLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H~~~---IlHRDlKPnNLLis~~g~lKiADFGLAr~f~  152 (318)
T KOG0659|consen   76 LSLVFEFMPTDLEVVIKDKNIILSPADIKSYMLMTLKGLAYCHSKW---ILHRDLKPNNLLISSDGQLKIADFGLARFFG  152 (318)
T ss_pred             eEEEEEeccccHHHHhcccccccCHHHHHHHHHHHHHHHHHHHhhh---hhcccCCccceEEcCCCcEEeecccchhccC
Confidence            6789999763        5677999999999999999999999999   9999999999999999999999999999987


Q ss_pred             cCccccc---ccccccchh----------hhhhhhcCCcc-eeec--CCCCCCCCHHHHHHHHHH
Q 043694           83 KDDLEAN---TNRIVGTQE----------SYNLWKDGKGR-KLMD--PSLDDTHSSWKLLTCLQI  131 (142)
Q Consensus        83 ~~~~~~~---~~~~~g~~~----------~~~~~~~~~~~-~~~d--~~~~~~~~~~~~~~~~~i  131 (142)
                      .......   ..+....|+          ..+.|+-|-+. |++.  |-+.|+.+.+++..+.+.
T Consensus       153 ~p~~~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL~~If~~  217 (318)
T KOG0659|consen  153 SPNRIQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLSKIFRA  217 (318)
T ss_pred             CCCcccccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHHHHHHHH
Confidence            6543222   122233333          67888888644 3332  445577888887777654

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.53  E-value=2.6e-14  Score=104.09  Aligned_cols=126  Identities=19%  Similarity=0.267  Sum_probs=93.0

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC-CceEEecccceee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED-LKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~-~~~~l~~fg~~~~   80 (142)
                      ..|+|+||+.++        ...+++.....+..|+++|+.|||..+   ++|||+++.|++++.+ ..+|++|||++..
T Consensus        94 ~~~ivmEy~~gGdL~~~i~~~g~l~E~~ar~~F~Qlisav~y~H~~g---i~HRDLK~ENilld~~~~~~Kl~DFG~s~~  170 (370)
T KOG0583|consen   94 KIYIVMEYCSGGDLFDYIVNKGRLKEDEARKYFRQLISAVAYCHSRG---IVHRDLKPENILLDGNEGNLKLSDFGLSAI  170 (370)
T ss_pred             eEEEEEEecCCccHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhCC---EeeCCCCHHHEEecCCCCCEEEeccccccc
Confidence            489999999874        367999999999999999999999999   9999999999999998 9999999999987


Q ss_pred             ee-cCcccccccccccchh----------------hhhhhhcCCcceeecCCC----------------CC--CCCHHH-
Q 043694           81 FV-KDDLEANTNRIVGTQE----------------SYNLWKDGKGRKLMDPSL----------------DD--THSSWK-  124 (142)
Q Consensus        81 ~~-~~~~~~~~~~~~g~~~----------------~~~~~~~~~~~~~~d~~~----------------~~--~~~~~~-  124 (142)
                      .. ..   ......+|++.                ..+.|+.|.+...+-.+.                .+  .++... 
T Consensus       171 ~~~~~---~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~~~l~~ki~~~~~~~p~~~~  247 (370)
T KOG0583|consen  171 SPGED---GLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSNVPNLYRKIRKGEFKIPSYLL  247 (370)
T ss_pred             cCCCC---CcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCccHHHHHHHHhcCCccCCCCcC
Confidence            63 21   12333455543                677887775443332111                11  122233 


Q ss_pred             HHHHHHHHHhccCccCC
Q 043694          125 LLTCLQIALLCVQENSN  141 (142)
Q Consensus       125 ~~~~~~i~~~C~~~~p~  141 (142)
                      ...+..+..+|++.||.
T Consensus       248 S~~~~~Li~~mL~~~P~  264 (370)
T KOG0583|consen  248 SPEARSLIEKMLVPDPS  264 (370)
T ss_pred             CHHHHHHHHHHcCCCcc
Confidence            55777777888888885

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.50  E-value=4.5e-14  Score=101.50  Aligned_cols=56  Identities=39%  Similarity=0.519  Sum_probs=51.5

Q ss_pred             ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           24 ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        24 ~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ++++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||+++.+.
T Consensus       170 ~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~  225 (338)
T cd05102         170 PLTMEDLICYSFQVARGMEFLASRK---CIHRDLAARNILLSENNVVKICDFGLARDIY  225 (338)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCccceEEEcCCCcEEEeecccccccc
Confidence            4788888999999999999999998   9999999999999999999999999987653

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.49  E-value=9.7e-14  Score=106.88  Aligned_cols=131  Identities=18%  Similarity=0.202  Sum_probs=92.3

Q ss_pred             hheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           11 LYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        11 ~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+|+||||++++          ..|++..+++|+.+++.|+.++|... +++||||||..|+|++.++..|++|||-+..
T Consensus       117 vllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~~-pPiIHRDLKiENvLls~~g~~KLCDFGSatt  195 (738)
T KOG1989|consen  117 VLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYLK-PPIIHRDLKIENVLLSADGNYKLCDFGSATT  195 (738)
T ss_pred             EEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcCC-CccchhhhhhhheEEcCCCCEEeCccccccc
Confidence            678899999643          34999999999999999999999865 6699999999999999999999999997654


Q ss_pred             eecCcc------------cccccccccchh------------hhhhhhcCC----------------cceeecCCCCCCC
Q 043694           81 FVKDDL------------EANTNRIVGTQE------------SYNLWKDGK----------------GRKLMDPSLDDTH  120 (142)
Q Consensus        81 ~~~~~~------------~~~~~~~~g~~~------------~~~~~~~~~----------------~~~~~d~~~~~~~  120 (142)
                      ......            ...+...+.+|+            -.+.|..|.                -..+++..+.-.-
T Consensus       196 ~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~laIlng~Y~~P~  275 (738)
T KOG1989|consen  196 KILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGKLAILNGNYSFPP  275 (738)
T ss_pred             ccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcceeEEeccccCCC
Confidence            332221            011222344455            334444332                3344444443222


Q ss_pred             CHHHHHHHHHHHHhccCccCCC
Q 043694          121 SSWKLLTCLQIALLCVQENSND  142 (142)
Q Consensus       121 ~~~~~~~~~~i~~~C~~~~p~~  142 (142)
                      .......+-.+...|+++||.+
T Consensus       276 ~p~ys~~l~~LI~~mL~~nP~~  297 (738)
T KOG1989|consen  276 FPNYSDRLKDLIRTMLQPNPDE  297 (738)
T ss_pred             CccHHHHHHHHHHHHhccCccc
Confidence            2466678888888899999964

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.49  E-value=2.2e-13  Score=96.66  Aligned_cols=70  Identities=30%  Similarity=0.423  Sum_probs=62.9

Q ss_pred             hhheeeeeCCCcc--------c-ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC-CCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR--------F-ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE-DLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~-~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~-~~~~~l~~fg~~~   79 (142)
                      .+++++||+++++        . .|++..+..+..+++.|+.|+|+++   ++|+|+++.|++++. ++.+|++|||.+.
T Consensus        90 ~~~i~mEy~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylHs~g---~vH~DiK~~NiLl~~~~~~~KlaDFG~a~  166 (313)
T KOG0198|consen   90 EYNIFMEYAPGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLHSKG---IVHCDIKPANILLDPSNGDVKLADFGLAK  166 (313)
T ss_pred             eeEeeeeccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCC---EeccCcccceEEEeCCCCeEEeccCcccc
Confidence            5788999988642        2 6999999999999999999999999   999999999999998 7999999999887


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      ...
T Consensus       167 ~~~  169 (313)
T KOG0198|consen  167 KLE  169 (313)
T ss_pred             ccc
Confidence            655

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.48  E-value=1.1e-14  Score=109.92  Aligned_cols=130  Identities=19%  Similarity=0.231  Sum_probs=96.4

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      .+|+|.||+..++          ..++.--.+.++.||.+|+.||..+.   +||||+.+.|++++.+...|++|||+++
T Consensus       337 PFYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkkn---FIHRDLAARNCLVgEnhiVKvADFGLsR  413 (1157)
T KOG4278|consen  337 PFYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHIVKVADFGLSR  413 (1157)
T ss_pred             CeEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHhh---hhhhhhhhhhccccccceEEeeccchhh
Confidence            4899999977644          33666667788999999999999888   9999999999999999999999999999


Q ss_pred             eeecCccccccc---------------------ccccchh--hhhhh----------hcCCcceeecCCCCCCCCHHHHH
Q 043694           80 IFVKDDLEANTN---------------------RIVGTQE--SYNLW----------KDGKGRKLMDPSLDDTHSSWKLL  126 (142)
Q Consensus        80 ~~~~~~~~~~~~---------------------~~~g~~~--~~~~~----------~~~~~~~~~d~~~~~~~~~~~~~  126 (142)
                      +.....+.+..+                     ..+..+|  .|+.-          ...+..++++.+++++.+..+..
T Consensus       414 lMtgDTYTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGidlSqVY~LLEkgyRM~~PeGCPp  493 (1157)
T KOG4278|consen  414 LMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYGLLEKGYRMDGPEGCPP  493 (1157)
T ss_pred             hhcCCceecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCccHHHHHHHHhccccccCCCCCCH
Confidence            876543322111                     1111111  11111          11134455667788888999999


Q ss_pred             HHHHHHHhccCccCCC
Q 043694          127 TCLQIALLCVQENSND  142 (142)
Q Consensus       127 ~~~~i~~~C~~~~p~~  142 (142)
                      .+.+++.+||+..|.|
T Consensus       494 kVYeLMraCW~WsPsD  509 (1157)
T KOG4278|consen  494 KVYELMRACWNWSPSD  509 (1157)
T ss_pred             HHHHHHHHHhcCCccc
Confidence            9999999999999975

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.48  E-value=8.8e-15  Score=112.06  Aligned_cols=127  Identities=26%  Similarity=0.401  Sum_probs=93.9

Q ss_pred             hheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           11 LYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        11 ~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .-+|.||++|+.         .-|++-+.+..+++|+.|+.||.+.+   .+||||.++||+++.+-.||++|||+++.+
T Consensus       705 vMIiTEyMENGsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLsdm~---YVHRDLAARNILVNsnLvCKVsDFGLSRvl  781 (996)
T KOG0196|consen  705 VMIITEYMENGSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLSDMN---YVHRDLAARNILVNSNLVCKVSDFGLSRVL  781 (996)
T ss_pred             eEEEhhhhhCCcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHhhcC---chhhhhhhhheeeccceEEEeccccceeec
Confidence            456788888743         45999999999999999999999988   999999999999999999999999999977


Q ss_pred             ecCccccccccccc-------chh---------hhhhhhcC--------------------CcceeecCCCCCCCCHHHH
Q 043694           82 VKDDLEANTNRIVG-------TQE---------SYNLWKDG--------------------KGRKLMDPSLDDTHSSWKL  125 (142)
Q Consensus        82 ~~~~~~~~~~~~~g-------~~~---------~~~~~~~~--------------------~~~~~~d~~~~~~~~~~~~  125 (142)
                      .+... ...+..-|       .|+         +.++|+-|                    .....++.+++-.-+.+++
T Consensus       782 edd~~-~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSNQdVIkaIe~gyRLPpPmDCP  860 (996)
T KOG0196|consen  782 EDDPE-AAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEQGYRLPPPMDCP  860 (996)
T ss_pred             ccCCC-ccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCcccccchHHHHHHHHhccCCCCCCCCc
Confidence            54431 11111111       111         34444333                    3444455556556677888


Q ss_pred             HHHHHHHHhccCccCC
Q 043694          126 LTCLQIALLCVQENSN  141 (142)
Q Consensus       126 ~~~~~i~~~C~~~~p~  141 (142)
                      ..+.++++.|||.|-+
T Consensus       861 ~aL~qLMldCWqkdR~  876 (996)
T KOG0196|consen  861 AALYQLMLDCWQKDRN  876 (996)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999998753

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.46  E-value=1.4e-13  Score=103.57  Aligned_cols=71  Identities=23%  Similarity=0.287  Sum_probs=63.3

Q ss_pred             hhheeeeeCCCcc------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccc
Q 043694           10 YLYLIFDVDPIRR------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      ..|+|+||++++.            .++++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||+
T Consensus       139 ~~~lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~---ivHrDlkp~NIll~~~~~~kL~DFgl  215 (478)
T PTZ00267        139 KLLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRK---MMHRDLKSANIFLMPTGIIKLGDFGF  215 (478)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCC---EEECCcCHHhEEECCCCcEEEEeCcC
Confidence            5899999987643            35888899999999999999999998   99999999999999999999999999


Q ss_pred             eeeeec
Q 043694           78 ARIFVK   83 (142)
Q Consensus        78 ~~~~~~   83 (142)
                      +..+..
T Consensus       216 a~~~~~  221 (478)
T PTZ00267        216 SKQYSD  221 (478)
T ss_pred             ceecCC
Confidence            887643

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.46  E-value=4.9e-13  Score=95.79  Aligned_cols=69  Identities=28%  Similarity=0.349  Sum_probs=61.6

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhc-cCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQE-YSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.|+|+||++++        ...+++..+..++.|++.|+.|||+ .+   ++|+|+++.||+++.++.++++|||++..
T Consensus        69 ~~~lv~E~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~~---ivHrDikp~NIll~~~~~~kL~Dfg~~~~  145 (325)
T cd05594          69 RLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKN---VVYRDLKLENLMLDKDGHIKITDFGLCKE  145 (325)
T ss_pred             EEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCC---EEecCCCCCeEEECCCCCEEEecCCCCee
Confidence            578999998864        3458999999999999999999997 67   99999999999999999999999998765


Q ss_pred             e
Q 043694           81 F   81 (142)
Q Consensus        81 ~   81 (142)
                      .
T Consensus       146 ~  146 (325)
T cd05594         146 G  146 (325)
T ss_pred             c
Confidence            3

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.45  E-value=3.3e-13  Score=96.65  Aligned_cols=69  Identities=28%  Similarity=0.353  Sum_probs=62.0

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+|+||++++.        ..+++.++..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        69 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~~---ivHrDlkp~NIll~~~~~~kl~DfG~a~~~  145 (323)
T cd05571          69 RLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALGYLHSCD---VVYRDLKLENLMLDKDGHIKITDFGLCKEG  145 (323)
T ss_pred             EEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCC---eEeCCCCHHHEEECCCCCEEEeeCCCCccc
Confidence            5789999987643        45899999999999999999999998   999999999999999999999999987653

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.44  E-value=5.7e-13  Score=94.46  Aligned_cols=56  Identities=32%  Similarity=0.654  Sum_probs=51.4

Q ss_pred             ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           24 ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        24 ~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++..+.
T Consensus       134 ~~~~~~~~~i~~~i~~al~~lH~~~---ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~  189 (304)
T cd05096         134 AISYSSLLHVALQIASGMKYLSSLN---FVHRDLATRNCLVGENLTIKIADFGMSRNLY  189 (304)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHCC---ccccCcchhheEEcCCccEEECCCccceecc
Confidence            3688889999999999999999998   9999999999999999999999999987553

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.44  E-value=1.2e-13  Score=102.61  Aligned_cols=130  Identities=22%  Similarity=0.389  Sum_probs=92.8

Q ss_pred             HhhhheeeeeCCC---------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccce
Q 043694            8 QLYLYLIFDVDPI---------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA   78 (142)
Q Consensus         8 ~~~~~lv~e~~~~---------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~   78 (142)
                      +.|+|+||||.+-         +.....| -+..+.-|++.++.+.|..+   |+|.||+|.|.++- .+..|+.|||++
T Consensus       432 d~~lYmvmE~Gd~DL~kiL~k~~~~~~~~-~lk~ywkqML~aV~~IH~~g---IVHSDLKPANFLlV-kG~LKLIDFGIA  506 (677)
T KOG0596|consen  432 DGYLYMVMECGDIDLNKILKKKKSIDPDW-FLKFYWKQMLLAVKTIHQHG---IVHSDLKPANFLLV-KGRLKLIDFGIA  506 (677)
T ss_pred             CceEEEEeecccccHHHHHHhccCCCchH-HHHHHHHHHHHHHHHHHHhc---eeecCCCcccEEEE-eeeEEeeeechh
Confidence            4689999999553         2222334 66778999999999999999   99999999998874 588899999999


Q ss_pred             eeeecCcccccccccccchh-------------------------hhhhhhcC---------------------Ccceee
Q 043694           79 RIFVKDDLEANTNRIVGTQE-------------------------SYNLWKDG---------------------KGRKLM  112 (142)
Q Consensus        79 ~~~~~~~~~~~~~~~~g~~~-------------------------~~~~~~~~---------------------~~~~~~  112 (142)
                      ..+............+||+.                         ..++|+.|                     ++..+.
T Consensus       507 ~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n~~aKl~aI~  586 (677)
T KOG0596|consen  507 NAIQPDTTSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIINQIAKLHAIT  586 (677)
T ss_pred             cccCccccceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHHHHHHHHhhc
Confidence            87765544443444556544                         45666666                     455666


Q ss_pred             cCCCCCCCCHHHH-HHHHHHHHhccCccCCC
Q 043694          113 DPSLDDTHSSWKL-LTCLQIALLCVQENSND  142 (142)
Q Consensus       113 d~~~~~~~~~~~~-~~~~~i~~~C~~~~p~~  142 (142)
                      ||.-.-+|+...- +.+++++..|++.||.+
T Consensus       587 ~P~~~Iefp~~~~~~~li~~mK~CL~rdPkk  617 (677)
T KOG0596|consen  587 DPNHEIEFPDIPENDELIDVMKCCLARDPKK  617 (677)
T ss_pred             CCCccccccCCCCchHHHHHHHHHHhcCccc
Confidence            6644333333222 23999999999999963

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.43  E-value=3.5e-13  Score=94.40  Aligned_cols=56  Identities=43%  Similarity=0.617  Sum_probs=51.6

Q ss_pred             cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           23 FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        23 ~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..+++..+..++.+++.|+.|||+.+   ++|+|+++.|++++.++.++++|||++...
T Consensus       119 ~~l~~~~~~~~~~~l~~al~~lH~~~---i~H~dlkp~Nil~~~~~~~~L~dfg~~~~~  174 (283)
T cd05048         119 SSLDCSDFLHIAIQIAAGMEYLSSHH---FVHRDLAARNCLVGEGLTVKISDFGLSRDI  174 (283)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---eeccccccceEEEcCCCcEEECCCcceeec
Confidence            44788899999999999999999998   999999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.43  E-value=2.5e-13  Score=102.59  Aligned_cols=70  Identities=20%  Similarity=0.334  Sum_probs=62.1

Q ss_pred             hhheeeeeCCCcc------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccc
Q 043694           10 YLYLIFDVDPIRR------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      +.++|+||++++.            ..+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||+
T Consensus       113 ~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~---IiHrDLKP~NILl~~~~~vkL~DFGl  189 (496)
T PTZ00283        113 MIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKH---MIHRDIKSANILLCSNGLVKLGDFGF  189 (496)
T ss_pred             EEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEeCCCCEEEEeccc
Confidence            3679999987643            35888999999999999999999998   99999999999999999999999999


Q ss_pred             eeeee
Q 043694           78 ARIFV   82 (142)
Q Consensus        78 ~~~~~   82 (142)
                      ++.+.
T Consensus       190 s~~~~  194 (496)
T PTZ00283        190 SKMYA  194 (496)
T ss_pred             Ceecc
Confidence            87654

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.42  E-value=1.4e-13  Score=103.99  Aligned_cols=98  Identities=29%  Similarity=0.455  Sum_probs=79.5

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .++|+|.||.++|.        ++|++....++..||..|+.|||...   ++|+|+++.|++++.+..+||+|||++..
T Consensus        85 ~~lylvlEyv~gGELFdylv~kG~l~e~eaa~ff~QIi~gv~yCH~~~---icHRDLKpENlLLd~~~nIKIADFGMAsL  161 (786)
T KOG0588|consen   85 QHLYLVLEYVPGGELFDYLVRKGPLPEREAAHFFRQILDGVSYCHAFN---ICHRDLKPENLLLDVKNNIKIADFGMASL  161 (786)
T ss_pred             ceEEEEEEecCCchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhc---ceeccCCchhhhhhcccCEeeeccceeec
Confidence            46999999998864        66999999999999999999999998   99999999999999887799999999987


Q ss_pred             eecCcccccccccccchh---------------hhhhhhcCCcceee
Q 043694           81 FVKDDLEANTNRIVGTQE---------------SYNLWKDGKGRKLM  112 (142)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~---------------~~~~~~~~~~~~~~  112 (142)
                      ...+.-   ....||++-               +.++|+.|.+...+
T Consensus       162 e~~gkl---LeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfAL  205 (786)
T KOG0588|consen  162 EVPGKL---LETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFAL  205 (786)
T ss_pred             ccCCcc---ccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHH
Confidence            554432   222344433               78889888755444

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.42  E-value=2.7e-13  Score=99.05  Aligned_cols=56  Identities=38%  Similarity=0.542  Sum_probs=51.7

Q ss_pred             ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           24 ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        24 ~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .+++..+..++.+++.|+.|+|+.+   ++|+|+++.|++++.+...+++|||++....
T Consensus       210 ~l~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~  265 (375)
T cd05104         210 ALDTEDLLSFSYQVAKGMSFLASKN---CIHRDLAARNILLTHGRITKICDFGLARDIR  265 (375)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCchhhEEEECCCcEEEecCccceecc
Confidence            4788999999999999999999998   9999999999999999999999999987654

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.42  E-value=4.9e-13  Score=96.02  Aligned_cols=69  Identities=26%  Similarity=0.317  Sum_probs=62.0

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+|+||++++.        ..+++.++..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        69 ~~~lv~Ey~~~g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDikp~NIll~~~~~~kL~DfG~~~~~  145 (328)
T cd05593          69 RLCFVMEYVNGGELFFHLSRERVFSEDRTRFYGAEIVSALDYLHSGK---IVYRDLKLENLMLDKDGHIKITDFGLCKEG  145 (328)
T ss_pred             EEEEEEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eEecccCHHHeEECCCCcEEEecCcCCccC
Confidence            5789999987643        45899999999999999999999998   999999999999999999999999987653

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.42  E-value=5e-13  Score=95.68  Aligned_cols=69  Identities=26%  Similarity=0.405  Sum_probs=61.8

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+|+||++++.        ..+++.++..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        75 ~~~lv~E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~Nill~~~~~~kL~DfG~~~~~  151 (323)
T cd05616          75 RLYFVMEYVNGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFFLHSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCKEN  151 (323)
T ss_pred             EEEEEEcCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---EEecCCCHHHeEECCCCcEEEccCCCceec
Confidence            4789999987643        45899999999999999999999998   999999999999999999999999988753

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.42  E-value=1e-13  Score=102.71  Aligned_cols=70  Identities=30%  Similarity=0.325  Sum_probs=63.4

Q ss_pred             hhhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            9 LYLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ..+|+|+|++.++.         ..++..++..++.+++.|+.|||+..   ++|||+.++|++++.+..+|++|||+++
T Consensus       234 ~Pl~ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YLh~k~---~IHRDIAARNcL~~~~~~vKISDFGLs~  310 (474)
T KOG0194|consen  234 EPLMLVMELCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYLHSKN---CIHRDIAARNCLYSKKGVVKISDFGLSR  310 (474)
T ss_pred             CccEEEEEecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHHHHCC---CcchhHhHHHheecCCCeEEeCcccccc
Confidence            45899999998853         24999999999999999999999999   9999999999999999999999999987


Q ss_pred             ee
Q 043694           80 IF   81 (142)
Q Consensus        80 ~~   81 (142)
                      .-
T Consensus       311 ~~  312 (474)
T KOG0194|consen  311 AG  312 (474)
T ss_pred             CC
Confidence            54

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.42  E-value=5.4e-13  Score=94.07  Aligned_cols=70  Identities=31%  Similarity=0.499  Sum_probs=61.1

Q ss_pred             hhheeeeeCCC--------cc---cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccce
Q 043694           10 YLYLIFDVDPI--------RR---FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~--------~~---~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~   78 (142)
                      .+|+|+||.+.        ..   ..++...+..++.|++.|+.|||+.+   |+|||++|.|++++.++..|++|||++
T Consensus        91 ~l~lvfe~~d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~---IlHRDLKPQNlLi~~~G~lKlaDFGlA  167 (323)
T KOG0594|consen   91 KLYLVFEFLDRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHG---ILHRDLKPQNLLISSSGVLKLADFGLA  167 (323)
T ss_pred             eEEEEEEeecccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCC---eecccCCcceEEECCCCcEeeeccchH
Confidence            57889998553        11   34677889999999999999999999   999999999999999999999999999


Q ss_pred             eeee
Q 043694           79 RIFV   82 (142)
Q Consensus        79 ~~~~   82 (142)
                      +...
T Consensus       168 ra~~  171 (323)
T KOG0594|consen  168 RAFS  171 (323)
T ss_pred             HHhc
Confidence            8655

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.41  E-value=4.3e-13  Score=96.71  Aligned_cols=56  Identities=39%  Similarity=0.528  Sum_probs=52.4

Q ss_pred             ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           24 ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        24 ~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .+++..+..++.+++.|+.|+|+.+   ++|+|+++.|++++.++.++++|||++..+.
T Consensus       169 ~l~~~~~~~~~~qi~~aL~~lH~~~---ivHrDikp~Nill~~~~~vkL~DfG~a~~~~  224 (337)
T cd05054         169 PLTLEDLISYSFQVARGMEFLASRK---CIHRDLAARNILLSENNVVKICDFGLARDIY  224 (337)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCcceEEEeCCCcEEEeccccchhcc
Confidence            5899999999999999999999998   9999999999999999999999999987654

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.41  E-value=3.8e-13  Score=95.18  Aligned_cols=119  Identities=30%  Similarity=0.405  Sum_probs=86.8

Q ss_pred             hhheeeeeCCC-------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPI-------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~-------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      -.|+|+|+++.       .+..|+......++.|++.|+.|+|+.+   ++|||++++|+++..+...|+.|||+++...
T Consensus       100 DvYiV~elMetDL~~iik~~~~L~d~H~q~f~YQiLrgLKyiHSAn---ViHRDLKPsNll~n~~c~lKI~DFGLAR~~~  176 (359)
T KOG0660|consen  100 DVYLVFELMETDLHQIIKSQQDLTDDHAQYFLYQILRGLKYIHSAN---VIHRDLKPSNLLLNADCDLKICDFGLARYLD  176 (359)
T ss_pred             eeEEehhHHhhHHHHHHHcCccccHHHHHHHHHHHHHhcchhhccc---ccccccchhheeeccCCCEEeccccceeecc
Confidence            47888888654       3444999999999999999999999999   9999999999999999999999999999885


Q ss_pred             cCc-----ccccccccccchh----------hhhhhhcCCccee-ec--CCCCCCCCHHHHHHHHHH
Q 043694           83 KDD-----LEANTNRIVGTQE----------SYNLWKDGKGRKL-MD--PSLDDTHSSWKLLTCLQI  131 (142)
Q Consensus        83 ~~~-----~~~~~~~~~g~~~----------~~~~~~~~~~~~~-~d--~~~~~~~~~~~~~~~~~i  131 (142)
                      ...     ..-..++.+.+|+          +.+.|+.|-+.+- +.  |-..|.-.-+++..++++
T Consensus       177 ~~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~  243 (359)
T KOG0660|consen  177 KFFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILEL  243 (359)
T ss_pred             ccCcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHh
Confidence            321     1111233444444          7889998875533 33  223355555555555443

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.41  E-value=3.4e-13  Score=96.62  Aligned_cols=69  Identities=26%  Similarity=0.431  Sum_probs=62.4

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+|+||++++.        ..+++.++..++.|++.|+.|||+.+   ++|+|+++.|++++.++.++++|||++...
T Consensus        75 ~~~lv~Ey~~~g~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~~---ivHrDikp~Nill~~~~~ikL~Dfg~~~~~  151 (323)
T cd05615          75 RLYFVMEYVNGGDLMYHIQQVGKFKEPQAVFYAAEISVGLFFLHRRG---IIYRDLKLDNVMLDSEGHIKIADFGMCKEH  151 (323)
T ss_pred             EEEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHeEECCCCCEEEecccccccc
Confidence            5789999988653        45899999999999999999999998   999999999999999999999999987653

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.40  E-value=3.3e-13  Score=100.96  Aligned_cols=71  Identities=30%  Similarity=0.422  Sum_probs=63.8

Q ss_pred             hheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           11 LYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        11 ~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      +++|||||.-++        .++.....+.+..+||.|+.|||..+   ||||||++.||++..+..+||+|||.++.+.
T Consensus       187 yCIiMEfCa~GqL~~VLka~~~itp~llv~Wsk~IA~GM~YLH~hK---IIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~  263 (904)
T KOG4721|consen  187 YCIIMEFCAQGQLYEVLKAGRPITPSLLVDWSKGIAGGMNYLHLHK---IIHRDLKSPNILISYDDVVKISDFGTSKELS  263 (904)
T ss_pred             eEEeeeccccccHHHHHhccCccCHHHHHHHHHHhhhhhHHHHHhh---HhhhccCCCceEeeccceEEeccccchHhhh
Confidence            678999998754        55888889999999999999999999   9999999999999999999999999988776


Q ss_pred             cC
Q 043694           83 KD   84 (142)
Q Consensus        83 ~~   84 (142)
                      ..
T Consensus       264 ~~  265 (904)
T KOG4721|consen  264 DK  265 (904)
T ss_pred             hh
Confidence            54

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.40  E-value=1.1e-12  Score=95.83  Aligned_cols=89  Identities=30%  Similarity=0.506  Sum_probs=72.7

Q ss_pred             hhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhcc------CCCceEecccCCCcEEeCCCCceEEeccc
Q 043694           10 YLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEY------SKLIVIHQDLKASNILLDEDLKSKISDFG   76 (142)
Q Consensus        10 ~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~------~~~~i~h~~l~~~nil~~~~~~~~l~~fg   76 (142)
                      -..||++|.++++       ...+|....+++..+++|+.|||+.      -+|+|+|||+++.||++..+..+.|+|||
T Consensus       282 eywLVt~fh~kGsL~dyL~~ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFG  361 (534)
T KOG3653|consen  282 EYWLVTEFHPKGSLCDYLKANTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFG  361 (534)
T ss_pred             ceeEEeeeccCCcHHHHHHhccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccc
Confidence            3578888877754       5599999999999999999999964      36789999999999999999999999999


Q ss_pred             ceeeeecCcccccccccccchh
Q 043694           77 LARIFVKDDLEANTNRIVGTQE   98 (142)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~g~~~   98 (142)
                      ++..+..+.....+...+||.+
T Consensus       362 LAl~~~p~~~~~d~~~qVGT~R  383 (534)
T KOG3653|consen  362 LALRLEPGKPQGDTHGQVGTRR  383 (534)
T ss_pred             eeEEecCCCCCcchhhhhhhhh
Confidence            9998876554333333566644

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.40  E-value=3.6e-13  Score=95.98  Aligned_cols=69  Identities=29%  Similarity=0.361  Sum_probs=61.9

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+|+||++++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        67 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~  143 (312)
T cd05585          67 KLYLVLAFINGGELFHHLQREGRFDLSRARFYTAELLCALENLHKFN---VIYRDLKPENILLDYQGHIALCDFGLCKLN  143 (312)
T ss_pred             eEEEEEcCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eEeCCCCHHHeEECCCCcEEEEECcccccC
Confidence            5789999987643        45899999999999999999999998   999999999999999999999999988753

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.40  E-value=5.8e-13  Score=96.36  Aligned_cols=96  Identities=24%  Similarity=0.422  Sum_probs=76.4

Q ss_pred             hheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           11 LYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        11 ~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ..+||||.+++.        ..|++.....+.+||++++.|||...   ++|+|++..||++++|+.+|++|||++..+.
T Consensus       128 IvivMEYaS~GeLYDYiSer~~LsErEaRhfFRQIvSAVhYCHknr---VvHRDLKLENILLD~N~NiKIADFGLSNly~  204 (668)
T KOG0611|consen  128 IVIVMEYASGGELYDYISERGSLSEREARHFFRQIVSAVHYCHKNR---VVHRDLKLENILLDQNNNIKIADFGLSNLYA  204 (668)
T ss_pred             EEEEEEecCCccHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhcc---ceecccchhheeecCCCCeeeeccchhhhhc
Confidence            678899987653        56999999999999999999999999   9999999999999999999999999988776


Q ss_pred             cCcccccccccccch------------h---hhhhhhcCCcceee
Q 043694           83 KDDLEANTNRIVGTQ------------E---SYNLWKDGKGRKLM  112 (142)
Q Consensus        83 ~~~~~~~~~~~~g~~------------~---~~~~~~~~~~~~~~  112 (142)
                      ...-   ...+||++            +   ..+.|+.|.+.+.+
T Consensus       205 ~~kf---LqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtL  246 (668)
T KOG0611|consen  205 DKKF---LQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTL  246 (668)
T ss_pred             cccH---HHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHH
Confidence            5432   22344433            2   56677777655443

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.39  E-value=4.5e-13  Score=94.29  Aligned_cols=70  Identities=31%  Similarity=0.331  Sum_probs=62.1

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      +.|+++||++++.          ..+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||++.
T Consensus        74 ~~~lv~e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---iiH~dikp~Nill~~~~~~kl~Dfg~~~  150 (285)
T cd05631          74 ALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRER---IVYRDLKPENILLDDRGHIRISDLGLAV  150 (285)
T ss_pred             eEEEEEEecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCC---EEeCCCCHHHEEECCCCCEEEeeCCCcE
Confidence            5789999987642          35889999999999999999999998   9999999999999999999999999987


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      ...
T Consensus       151 ~~~  153 (285)
T cd05631         151 QIP  153 (285)
T ss_pred             EcC
Confidence            653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.39  E-value=4.2e-13  Score=96.14  Aligned_cols=68  Identities=26%  Similarity=0.427  Sum_probs=61.2

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.|+|+||++++.        ..+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||++..
T Consensus        75 ~~~lv~E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~dlkp~Nill~~~~~~kL~Dfg~~~~  150 (324)
T cd05587          75 RLYFVMEYVNGGDLMYHIQQVGKFKEPHAVFYAAEIAIGLFFLHSKG---IIYRDLKLDNVMLDAEGHIKIADFGMCKE  150 (324)
T ss_pred             EEEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHeEEcCCCCEEEeecCccee
Confidence            5789999987643        45899999999999999999999998   99999999999999999999999998764

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.39  E-value=1e-12  Score=92.17  Aligned_cols=69  Identities=35%  Similarity=0.576  Sum_probs=60.7

Q ss_pred             hheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           11 LYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        11 ~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .++++||.+++         ...+++..+..++.|++.|+.|+|+.+   ++|+++++.|++++.++.++++|||.++..
T Consensus        83 ~~~i~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---iiH~dlkp~nili~~~~~~kl~Dfg~~~~~  159 (279)
T cd05111          83 LQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHR---MVHRNLAARNILLKSDSIVQIADFGVADLL  159 (279)
T ss_pred             cEEEEEeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCC---EeccccCcceEEEcCCCcEEEcCCccceec
Confidence            56788887653         245899999999999999999999988   999999999999999999999999998765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       160 ~  160 (279)
T cd05111         160 Y  160 (279)
T ss_pred             c
Confidence            4

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>PHA02988 hypothetical protein; Provisional

Probab=99.39  E-value=7.2e-13  Score=93.32  Aligned_cols=69  Identities=28%  Similarity=0.336  Sum_probs=60.8

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhcc-CCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEY-SKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~-~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.++++||++++.        ..+++.+...++.+++.|+.|+|.. .   ++|+|+++.|++++.++.+++.|||+++.
T Consensus        96 ~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~---~~Hrdlkp~nill~~~~~~kl~dfg~~~~  172 (283)
T PHA02988         96 RLSLILEYCTRGYLREVLDKEKDLSFKTKLDMAIDCCKGLYNLYKYTN---KPYKNLTSVSFLVTENYKLKIICHGLEKI  172 (283)
T ss_pred             ceEEEEEeCCCCcHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHhcCC---CCCCcCChhhEEECCCCcEEEcccchHhh
Confidence            5789999988643        4589999999999999999999975 5   67999999999999999999999998875


Q ss_pred             e
Q 043694           81 F   81 (142)
Q Consensus        81 ~   81 (142)
                      +
T Consensus       173 ~  173 (283)
T PHA02988        173 L  173 (283)
T ss_pred             h
Confidence            4

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.39  E-value=1.1e-12  Score=89.38  Aligned_cols=102  Identities=26%  Similarity=0.413  Sum_probs=80.0

Q ss_pred             hhhheeeeeCCCcccc--------cCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC---CCceEEecccc
Q 043694            9 LYLYLIFDVDPIRRFI--------LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE---DLKSKISDFGL   77 (142)
Q Consensus         9 ~~~~lv~e~~~~~~~~--------l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~---~~~~~l~~fg~   77 (142)
                      .|.|+|+|++.++...        +++......+.|++.++.|+|+.+   |+|||++|.|+++.+   ....|+.+||+
T Consensus        83 ~~~ylvFe~m~G~dl~~eIV~R~~ySEa~aSH~~rQiLeal~yCH~n~---IvHRDvkP~nllLASK~~~A~vKL~~FGv  159 (355)
T KOG0033|consen   83 SFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILEALAYCHSNG---IVHRDLKPENLLLASKAKGAAVKLADFGL  159 (355)
T ss_pred             ceeEEEEecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ceeccCChhheeeeeccCCCceeecccce
Confidence            5799999999886533        677777788999999999999999   999999999999963   45789999999


Q ss_pred             eeeeecCcccccccccccchh--------------hhhhhhcCCcceeecCCC
Q 043694           78 ARIFVKDDLEANTNRIVGTQE--------------SYNLWKDGKGRKLMDPSL  116 (142)
Q Consensus        78 ~~~~~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~~~~d~~~  116 (142)
                      +..+..+..   ..-++|+|+              +.+.|..|.+..++-.+.
T Consensus       160 Ai~l~~g~~---~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~  209 (355)
T KOG0033|consen  160 AIEVNDGEA---WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGY  209 (355)
T ss_pred             EEEeCCccc---cccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCC
Confidence            998873321   233567666              677888777666655444

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.39  E-value=8.5e-13  Score=94.73  Aligned_cols=69  Identities=28%  Similarity=0.316  Sum_probs=61.8

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+++||++++.        ..+++..+..++.+++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||++..+
T Consensus        79 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivHrDlkp~Nili~~~~~~kl~DfG~~~~~  155 (332)
T cd05614          79 KLHLILDYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALEHLHKLG---IVYRDIKLENILLDSEGHVVLTDFGLSKEF  155 (332)
T ss_pred             EEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---cEecCCCHHHeEECCCCCEEEeeCcCCccc
Confidence            4789999987643        45899999999999999999999998   999999999999999999999999988754

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.39  E-value=1.2e-12  Score=93.95  Aligned_cols=69  Identities=29%  Similarity=0.360  Sum_probs=61.8

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+|+||++++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++..+++|||++...
T Consensus        70 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qil~al~~LH~~~---ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~  146 (330)
T cd05586          70 DLYLVTDYMSGGELFWHLQKEGRFSEDRAKFYIAELVLALEHLHKYD---IVYRDLKPENILLDATGHIALCDFGLSKAN  146 (330)
T ss_pred             eEEEEEcCCCCChHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCCHHHeEECCCCCEEEecCCcCcCC
Confidence            4789999987643        45899999999999999999999998   999999999999999999999999987653

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.38  E-value=4e-13  Score=98.17  Aligned_cols=84  Identities=31%  Similarity=0.473  Sum_probs=72.5

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      |++++++|++++.          ..|+++++..++.|++.|+.|||+..   ++|||++..||++.++..+++.|||+++
T Consensus        78 ~l~Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~---iLHRDlK~~Nifltk~~~VkLgDfGlaK  154 (426)
T KOG0589|consen   78 LLCIVMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHENR---VLHRDLKCANIFLTKDKKVKLGDFGLAK  154 (426)
T ss_pred             eEEEEEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhhh---hhcccchhhhhhccccCceeecchhhhh
Confidence            5999999999854          45999999999999999999999887   9999999999999999999999999999


Q ss_pred             eeecCcccccccccccchh
Q 043694           80 IFVKDDLEANTNRIVGTQE   98 (142)
Q Consensus        80 ~~~~~~~~~~~~~~~g~~~   98 (142)
                      .+......  ..+.+|++.
T Consensus       155 ~l~~~~~~--a~tvvGTp~  171 (426)
T KOG0589|consen  155 ILNPEDSL--ASTVVGTPY  171 (426)
T ss_pred             hcCCchhh--hheecCCCc
Confidence            88766522  334667765

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.38  E-value=3.4e-13  Score=95.55  Aligned_cols=122  Identities=26%  Similarity=0.435  Sum_probs=91.4

Q ss_pred             HhhhheeeeeCCC-----------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC-CceEEecc
Q 043694            8 QLYLYLIFDVDPI-----------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED-LKSKISDF   75 (142)
Q Consensus         8 ~~~~~lv~e~~~~-----------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~-~~~~l~~f   75 (142)
                      ..|+.+|+||++.           .+..++.-.+.-+..|+.+|+.|||+.+   +.|||++|.|++++.+ +..|++||
T Consensus        94 ~~~lnlVleymP~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~---IcHRDIKPqNlLvD~~tg~LKicDF  170 (364)
T KOG0658|consen   94 EVYLNLVLEYMPETLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHG---ICHRDIKPQNLLVDPDTGVLKICDF  170 (364)
T ss_pred             hhHHHHHHHhchHHHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcC---cccCCCChheEEEcCCCCeEEeccC
Confidence            3578899999764           1345666777788999999999999988   9999999999999864 89999999


Q ss_pred             cceeeeecCccccc--ccccccchh----------hhhhhhcCCcc-eeec--CCCCCCCCHHHHHHHHHHH
Q 043694           76 GLARIFVKDDLEAN--TNRIVGTQE----------SYNLWKDGKGR-KLMD--PSLDDTHSSWKLLTCLQIA  132 (142)
Q Consensus        76 g~~~~~~~~~~~~~--~~~~~g~~~----------~~~~~~~~~~~-~~~d--~~~~~~~~~~~~~~~~~i~  132 (142)
                      |.++.+..+....+  .++....|+          ..+.|+.|-.. |++-  |-..|+.+.+++..++++.
T Consensus       171 GSAK~L~~~epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik~l  242 (364)
T KOG0658|consen  171 GSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIKVL  242 (364)
T ss_pred             CcceeeccCCCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHHHh
Confidence            99998876654332  234444444          78999988633 3332  3455777778888777653

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.38  E-value=1.3e-12  Score=93.70  Aligned_cols=69  Identities=26%  Similarity=0.350  Sum_probs=62.0

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+|+||++++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        69 ~~~lv~E~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~  145 (323)
T cd05595          69 RLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRD---VVYRDIKLENLMLDKDGHIKITDFGLCKEG  145 (323)
T ss_pred             EEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHEEEcCCCCEEecccHHhccc
Confidence            5789999987653        45899999999999999999999998   999999999999999999999999987653

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.38  E-value=1.7e-12  Score=94.88  Aligned_cols=56  Identities=36%  Similarity=0.573  Sum_probs=51.6

Q ss_pred             ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           24 ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        24 ~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ++++.++..++.|++.|+.|||+.+   ++|+|+++.|++++.+..++++|||++..+.
T Consensus       208 ~l~~~~~~~i~~qi~~aL~yLH~~g---iiHrDLkp~Nil~~~~~~~kL~DfGla~~~~  263 (374)
T cd05106         208 PLDLDDLLRFSSQVAQGMDFLASKN---CIHRDVAARNVLLTDGRVAKICDFGLARDIM  263 (374)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHCC---EEeccCchheEEEeCCCeEEEeeceeeeecc
Confidence            4788899999999999999999998   9999999999999999999999999987643

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.38  E-value=8.2e-13  Score=94.50  Aligned_cols=69  Identities=28%  Similarity=0.380  Sum_probs=61.7

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+|+||++++.        ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        70 ~~~lv~E~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDikp~Nill~~~~~~kL~Dfg~~~~~  146 (321)
T cd05591          70 RLFFVMEYVNGGDLMFQIQRSRKFDEPRSRFYAAEVTLALMFLHRHG---VIYRDLKLDNILLDAEGHCKLADFGMCKEG  146 (321)
T ss_pred             eEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHeEECCCCCEEEeecccceec
Confidence            4789999987642        45889999999999999999999998   999999999999999999999999987653

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.38  E-value=1.3e-12  Score=90.85  Aligned_cols=70  Identities=29%  Similarity=0.422  Sum_probs=60.9

Q ss_pred             hhheeeeeCCCcc--------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecc
Q 043694           10 YLYLIFDVDPIRR--------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDF   75 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~f   75 (142)
                      +.++++||.+++.              ..+++..+..++.|++.|+.|+|+.+   ++|+++++.|++++.+..++++||
T Consensus        81 ~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~df  157 (273)
T cd05035          81 KPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRN---FIHRDLAARNCMLREDMTVCVADF  157 (273)
T ss_pred             ccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCC---eeccccchheEEECCCCeEEECCc
Confidence            4678888866432              35899999999999999999999998   999999999999999999999999


Q ss_pred             cceeeee
Q 043694           76 GLARIFV   82 (142)
Q Consensus        76 g~~~~~~   82 (142)
                      |.++...
T Consensus       158 g~~~~~~  164 (273)
T cd05035         158 GLSKKIY  164 (273)
T ss_pred             cceeecc
Confidence            9987654

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.38  E-value=5.6e-13  Score=95.24  Aligned_cols=69  Identities=28%  Similarity=0.393  Sum_probs=61.7

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.|+|+||+.++.        ..+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||++..
T Consensus        69 ~~~~lv~E~~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~  145 (316)
T cd05620          69 EHLFFVMEFLNGGDLMFHIQDKGRFDLYRATFYAAEIVCGLQFLHSKG---IIYRDLKLDNVMLDRDGHIKIADFGMCKE  145 (316)
T ss_pred             CEEEEEECCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHeEECCCCCEEeCccCCCee
Confidence            35789999987643        45889999999999999999999998   99999999999999999999999998764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.38  E-value=1.1e-12  Score=92.65  Aligned_cols=70  Identities=24%  Similarity=0.359  Sum_probs=60.9

Q ss_pred             hhhheeeeeCCCcc--------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC
Q 043694            9 LYLYLIFDVDPIRR--------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL   68 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~   68 (142)
                      ...|+++||++++.                    ..+++.++..++.+++.|+.|+|+.+   ++|+|+++.|++++.+.
T Consensus        90 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~---i~H~dlkp~Nill~~~~  166 (295)
T cd05097          90 DPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLN---FVHRDLATRNCLVGNHY  166 (295)
T ss_pred             CccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcC---eeccccChhhEEEcCCC
Confidence            35789999987532                    23788899999999999999999998   99999999999999999


Q ss_pred             ceEEecccceeee
Q 043694           69 KSKISDFGLARIF   81 (142)
Q Consensus        69 ~~~l~~fg~~~~~   81 (142)
                      ..+++|||++..+
T Consensus       167 ~~kl~dfg~~~~~  179 (295)
T cd05097         167 TIKIADFGMSRNL  179 (295)
T ss_pred             cEEeccccccccc
Confidence            9999999988654

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.38  E-value=5.9e-13  Score=95.14  Aligned_cols=69  Identities=29%  Similarity=0.379  Sum_probs=62.1

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+|+||++++.        ..+++.++..++.|++.|+.|||+.+   ++|+|+++.||+++.++.+++.|||++...
T Consensus        70 ~~~lv~e~~~gg~L~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~---ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~  146 (316)
T cd05592          70 HLFFVMEYLNGGDLMFHIQSSGRFDEARARFYAAEIICGLQFLHKKG---IIYRDLKLDNVLLDKDGHIKIADFGMCKEN  146 (316)
T ss_pred             EEEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---EEeCCCCHHHeEECCCCCEEEccCcCCeEC
Confidence            5789999987643        45889999999999999999999998   999999999999999999999999998754

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.38  E-value=3.4e-13  Score=106.90  Aligned_cols=128  Identities=23%  Similarity=0.315  Sum_probs=91.9

Q ss_pred             hheeeeeCCCc---------------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecc
Q 043694           11 LYLIFDVDPIR---------------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDF   75 (142)
Q Consensus        11 ~~lv~e~~~~~---------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~f   75 (142)
                      -++++||++++               ...|+....+.++.+||+|+.||+++.   ++|||+.++|++++.....|++||
T Consensus       770 ~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~---fvHRDLAaRNCLL~~~r~VKIaDF  846 (1025)
T KOG1095|consen  770 PLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKH---FVHRDLAARNCLLDERRVVKIADF  846 (1025)
T ss_pred             cEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCC---CcCcchhhhheeecccCcEEEccc
Confidence            56778887764               345999999999999999999999998   999999999999999999999999


Q ss_pred             cceeeeecCccccc----------------------ccccccchh--hhhhhhcCCc-------ce----eecCCCCCCC
Q 043694           76 GLARIFVKDDLEAN----------------------TNRIVGTQE--SYNLWKDGKG-------RK----LMDPSLDDTH  120 (142)
Q Consensus        76 g~~~~~~~~~~~~~----------------------~~~~~g~~~--~~~~~~~~~~-------~~----~~d~~~~~~~  120 (142)
                      |+++-+....+...                      +.+.+.++|  .|+..+.|..       .+    ....+ +.+.
T Consensus       847 GlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~v~~~~~~gg-RL~~  925 (1025)
T KOG1095|consen  847 GLARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFEVLLDVLEGG-RLDP  925 (1025)
T ss_pred             chhHhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcchHHHHHHHHhCC-ccCC
Confidence            99994333222111                      122333333  3555544421       11    11111 3356


Q ss_pred             CHHHHHHHHHHHHhccCccCCC
Q 043694          121 SSWKLLTCLQIALLCVQENSND  142 (142)
Q Consensus       121 ~~~~~~~~~~i~~~C~~~~p~~  142 (142)
                      +..+...+.+|+..||+.+|++
T Consensus       926 P~~CP~~ly~lM~~CW~~~pe~  947 (1025)
T KOG1095|consen  926 PSYCPEKLYQLMLQCWKHDPED  947 (1025)
T ss_pred             CCCCChHHHHHHHHHccCChhh
Confidence            6677788999999999999975

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.38  E-value=1.1e-12  Score=93.86  Aligned_cols=68  Identities=26%  Similarity=0.362  Sum_probs=60.9

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||++++.        ..++...+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.+++.|||++..
T Consensus        70 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~  145 (321)
T cd05603          70 KLYFVLDYVNGGELFFHLQRERCFLEPRARFYAAEVASAIGYLHSLN---IIYRDLKPENILLDSQGHVVLTDFGLCKE  145 (321)
T ss_pred             EEEEEEcCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCCHHHeEECCCCCEEEccCCCCcc
Confidence            4789999987643        45888889999999999999999998   99999999999999999999999998764

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.38  E-value=7.2e-13  Score=95.22  Aligned_cols=69  Identities=26%  Similarity=0.347  Sum_probs=62.0

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+|+||++++.        ..+++..+..++.+++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        70 ~~~lv~E~~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dikp~Nili~~~~~~kL~DfG~~~~~  146 (329)
T cd05618          70 RLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERG---IIYRDLKLDNVLLDSEGHIKLTDYGMCKEG  146 (329)
T ss_pred             EEEEEEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHHHEEECCCCCEEEeeCCccccc
Confidence            5789999988643        45899999999999999999999998   999999999999999999999999987653

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.38  E-value=1.1e-12  Score=92.50  Aligned_cols=69  Identities=30%  Similarity=0.490  Sum_probs=60.7

Q ss_pred             hhheeeeeCCCcc------------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC
Q 043694           10 YLYLIFDVDPIRR------------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD   65 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~   65 (142)
                      +.++|+||.+++.                        ..+++.++..++.+++.++.|+|+.+   ++|+|+++.||+++
T Consensus        81 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~---i~H~dlkp~Nil~~  157 (291)
T cd05094          81 PLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQH---FVHRDLATRNCLVG  157 (291)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecccCcceEEEc
Confidence            4789999876432                        23899999999999999999999998   99999999999999


Q ss_pred             CCCceEEecccceeee
Q 043694           66 EDLKSKISDFGLARIF   81 (142)
Q Consensus        66 ~~~~~~l~~fg~~~~~   81 (142)
                      .++.+++.|||.+...
T Consensus       158 ~~~~~~l~dfg~a~~~  173 (291)
T cd05094         158 ANLLVKIGDFGMSRDV  173 (291)
T ss_pred             cCCcEEECCCCccccc
Confidence            9999999999987654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.37  E-value=1.6e-12  Score=92.11  Aligned_cols=70  Identities=33%  Similarity=0.489  Sum_probs=61.0

Q ss_pred             hhheeeeeCCCcc------------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC
Q 043694           10 YLYLIFDVDPIRR------------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD   65 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~   65 (142)
                      +.|+++||++++.                        ..+++.++..++.|++.|+.|||+.+   ++|+|+++.|++++
T Consensus        95 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~g---ivH~dlkp~Nili~  171 (304)
T cd05101          95 PLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQK---CIHRDLAARNVLVT  171 (304)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCC---eeecccccceEEEc
Confidence            4689999876531                        24788889999999999999999998   99999999999999


Q ss_pred             CCCceEEecccceeeee
Q 043694           66 EDLKSKISDFGLARIFV   82 (142)
Q Consensus        66 ~~~~~~l~~fg~~~~~~   82 (142)
                      .++..+++|||.+....
T Consensus       172 ~~~~~kl~D~g~~~~~~  188 (304)
T cd05101         172 ENNVMKIADFGLARDVN  188 (304)
T ss_pred             CCCcEEECCCccceecc
Confidence            99999999999987654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.37  E-value=1.4e-12  Score=98.12  Aligned_cols=120  Identities=23%  Similarity=0.297  Sum_probs=89.2

Q ss_pred             hhhheeeeeCC---------CcccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC--CCceEEecccc
Q 043694            9 LYLYLIFDVDP---------IRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE--DLKSKISDFGL   77 (142)
Q Consensus         9 ~~~~lv~e~~~---------~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~--~~~~~l~~fg~   77 (142)
                      .++|+|+|..+         ++...|+...+..++.||+.||.+||+.+   +||+||||.||++..  ...+|+.|||.
T Consensus       261 ~HlciVfELL~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~---IIHcDLKPENILL~~~~r~~vKVIDFGS  337 (586)
T KOG0667|consen  261 NHLCIVFELLSTNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHELG---IIHCDLKPENILLKDPKRSRIKVIDFGS  337 (586)
T ss_pred             cceeeeehhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCChhheeeccCCcCceeEEeccc
Confidence            35677766533         34466999999999999999999999998   999999999999963  45899999999


Q ss_pred             eeeeecCcccccccccccchh---------hhhhhhcCCcceeec---CCCCCCCCHHHHHHHHHH
Q 043694           78 ARIFVKDDLEANTNRIVGTQE---------SYNLWKDGKGRKLMD---PSLDDTHSSWKLLTCLQI  131 (142)
Q Consensus        78 ~~~~~~~~~~~~~~~~~g~~~---------~~~~~~~~~~~~~~d---~~~~~~~~~~~~~~~~~i  131 (142)
                      +.+.......-..++...+|+         +++.|+.|-+.+-+-   |-+.|+-..+++..++++
T Consensus       338 Sc~~~q~vytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~ne~DQl~~I~e~  403 (586)
T KOG0667|consen  338 SCFESQRVYTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGDNEYDQLARIIEV  403 (586)
T ss_pred             ccccCCcceeeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCCCHHHHHHHHHHH
Confidence            887665443222333444444         899999997654433   444567777888888776

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.37  E-value=1.7e-12  Score=91.01  Aligned_cols=70  Identities=39%  Similarity=0.562  Sum_probs=62.1

Q ss_pred             hhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      +.|+++||.+++.       ..+++.++..++.+++.|+.|+|+.+   ++|+|+++.||+++.+..+++.|||++....
T Consensus        82 ~~~lv~e~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~  158 (283)
T cd05080          82 GLQLIMEYVPLGSLRDYLPKHKLNLAQLLLFAQQICEGMAYLHSQH---YIHRDLAARNVLLDNDRLVKIGDFGLAKAVP  158 (283)
T ss_pred             eEEEEecCCCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCC---eeccccChheEEEcCCCcEEEeecccccccC
Confidence            4789999977643       35899999999999999999999998   9999999999999999999999999887654

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.37  E-value=3.7e-13  Score=101.10  Aligned_cols=79  Identities=37%  Similarity=0.461  Sum_probs=69.3

Q ss_pred             hheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           11 LYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        11 ~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .+||||||-++        ..+|.+..+..|+.|++.|+.|||+.+   .||+|+++.||++...+.+|++|||.+....
T Consensus       101 aWLVMEYClGSAsDlleVhkKplqEvEIAAi~~gaL~gLaYLHS~~---~IHRDiKAGNILLse~g~VKLaDFGSAsi~~  177 (948)
T KOG0577|consen  101 AWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHN---RIHRDIKAGNILLSEPGLVKLADFGSASIMA  177 (948)
T ss_pred             HHHHHHHHhccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhh---HHhhhccccceEecCCCeeeeccccchhhcC
Confidence            68999998774        366889999999999999999999999   9999999999999999999999999887654


Q ss_pred             cCcccccccccccchh
Q 043694           83 KDDLEANTNRIVGTQE   98 (142)
Q Consensus        83 ~~~~~~~~~~~~g~~~   98 (142)
                      +      .++++|||+
T Consensus       178 P------AnsFvGTPy  187 (948)
T KOG0577|consen  178 P------ANSFVGTPY  187 (948)
T ss_pred             c------hhcccCCcc
Confidence            3      345788876

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.37  E-value=1.7e-12  Score=92.66  Aligned_cols=70  Identities=31%  Similarity=0.439  Sum_probs=62.5

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+|+||++++        ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        72 ~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~  148 (318)
T cd05582          72 KLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLG---IIYRDLKPENILLDEEGHIKLTDFGLSKES  148 (318)
T ss_pred             EEEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHeEECCCCcEEEeeccCCccc
Confidence            578999998764        345899999999999999999999998   999999999999999999999999988754


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       149 ~  149 (318)
T cd05582         149 I  149 (318)
T ss_pred             C
Confidence            3

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.37  E-value=1e-12  Score=92.77  Aligned_cols=71  Identities=30%  Similarity=0.460  Sum_probs=62.9

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.|+++||++++.        ..+++.....++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||++..
T Consensus        74 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~NIli~~~~~~kl~Dfg~~~~  150 (291)
T cd05612          74 RFLYMLMEYVPGGELFSYLRNSGRFSNSTGLFYASEIVCALEYLHSKE---IVYRDLKPENILLDKEGHIKLTDFGFAKK  150 (291)
T ss_pred             CeEEEEEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHeEECCCCCEEEEecCcchh
Confidence            35789999987642        45889999999999999999999998   99999999999999999999999998876


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       151 ~~  152 (291)
T cd05612         151 LR  152 (291)
T ss_pred             cc
Confidence            54

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.37  E-value=9.9e-13  Score=92.60  Aligned_cols=57  Identities=37%  Similarity=0.519  Sum_probs=52.4

Q ss_pred             cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           23 FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        23 ~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ..+++..+..++.|++.|+.|+|+.+   ++|+|+++.|++++.++..+++|||.+..+.
T Consensus       127 ~~l~~~~~~~i~~qi~~al~~LH~~~---ivH~dlkp~Nil~~~~~~~kL~Dfg~~~~~~  183 (293)
T cd05053         127 ETLTQKDLVSFAYQVARGMEFLASKK---CIHRDLAARNVLVTEDHVMKIADFGLARDIH  183 (293)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHCC---ccccccceeeEEEcCCCeEEeCccccccccc
Confidence            45889999999999999999999988   9999999999999999999999999887654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.37  E-value=9.9e-13  Score=94.13  Aligned_cols=69  Identities=26%  Similarity=0.409  Sum_probs=61.8

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+|+||++++        ...+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        70 ~~~iv~Ey~~~g~L~~~i~~~~~l~~~~~~~~~~ql~~~L~~lH~~~---ivH~dlkp~NIli~~~~~~kL~DfG~~~~~  146 (320)
T cd05590          70 RLFFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEITSALMFLHDKG---IIYRDLKLDNVLLDHEGHCKLADFGMCKEG  146 (320)
T ss_pred             EEEEEEcCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCCHHHeEECCCCcEEEeeCCCCeec
Confidence            478999998764        346899999999999999999999998   999999999999999999999999987653

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.36  E-value=1.3e-12  Score=90.36  Aligned_cols=70  Identities=29%  Similarity=0.432  Sum_probs=61.9

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.|+++||.+++         ...+++..+..++.+++.|+.|+|+.+   ++|+++++.|++++.++..+++|||.++.
T Consensus        73 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dl~p~ni~i~~~~~~kl~dfg~~~~  149 (256)
T cd05059          73 PIFIVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNG---FIHRDLAARNCLVGEDNVVKVSDFGLARY  149 (256)
T ss_pred             ceEEEEecCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCC---cccccccHhhEEECCCCcEEECCccccee
Confidence            578999987653         245899999999999999999999998   99999999999999999999999998876


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       150 ~~  151 (256)
T cd05059         150 VL  151 (256)
T ss_pred             cc
Confidence            53

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.36  E-value=1.5e-12  Score=93.19  Aligned_cols=69  Identities=29%  Similarity=0.354  Sum_probs=61.6

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||++++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        70 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~g---ivH~dikp~NIll~~~~~~kl~Dfg~~~~~  146 (323)
T cd05575          70 KLYFVLDYVNGGELFFHLQRERSFPEPRARFYAAEIASALGYLHSLN---IIYRDLKPENILLDSQGHVVLTDFGLCKEG  146 (323)
T ss_pred             EEEEEEcCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCCHHHeEECCCCcEEEeccCCCccc
Confidence            4789999987643        45889999999999999999999998   999999999999999999999999987653

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.36  E-value=2.6e-12  Score=88.82  Aligned_cols=70  Identities=29%  Similarity=0.463  Sum_probs=61.1

Q ss_pred             hhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ..|+++||++++          ...+++..+..++.+++.|+.|+|+.+   ++|+++++.|++++.++..+++|||++.
T Consensus        74 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~nil~~~~~~~kl~dfg~~~  150 (256)
T cd05082          74 GLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANN---FVHRDLAARNVLVSEDNVAKVSDFGLTK  150 (256)
T ss_pred             ceEEEEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---EeccccchheEEEcCCCcEEecCCccce
Confidence            468899997652          224889999999999999999999998   9999999999999999999999999877


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      ...
T Consensus       151 ~~~  153 (256)
T cd05082         151 EAS  153 (256)
T ss_pred             ecc
Confidence            543

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.36  E-value=1.9e-12  Score=93.54  Aligned_cols=70  Identities=30%  Similarity=0.414  Sum_probs=62.7

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+|+||++++.        ..+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus       105 ~~~lv~Ey~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDLkp~NILl~~~~~ikL~DFG~a~~~  181 (340)
T PTZ00426        105 YLYLVLEFVIGGEFFTFLRRNKRFPNDVGCFYAAQIVLIFEYLQSLN---IVYRDLKPENLLLDKDGFIKMTDFGFAKVV  181 (340)
T ss_pred             EEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEccCCCHHHEEECCCCCEEEecCCCCeec
Confidence            5789999987643        45889999999999999999999998   999999999999999999999999998765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       182 ~  182 (340)
T PTZ00426        182 D  182 (340)
T ss_pred             C
Confidence            3

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.36  E-value=1.7e-12  Score=95.71  Aligned_cols=56  Identities=32%  Similarity=0.478  Sum_probs=51.4

Q ss_pred             ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           24 ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        24 ~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .+++..+..++.|++.|+.|||+.+   ++|+|+++.|++++.+..++++|||++..+.
T Consensus       233 ~l~~~~~~~~~~qi~~aL~~LH~~~---ivH~dikp~Nill~~~~~~kL~DfGla~~~~  288 (400)
T cd05105         233 GLTTLDLLSFTYQVARGMEFLASKN---CVHRDLAARNVLLAQGKIVKICDFGLARDIM  288 (400)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChHhEEEeCCCEEEEEeCCcceecc
Confidence            3788888999999999999999998   9999999999999999999999999987654

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.36  E-value=1.4e-12  Score=90.73  Aligned_cols=70  Identities=27%  Similarity=0.426  Sum_probs=60.1

Q ss_pred             hhheeeeeCCCcc--------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecc
Q 043694           10 YLYLIFDVDPIRR--------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDF   75 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~f   75 (142)
                      ..+++++|++++.              ..+++.....++.|++.|+.|+|+.+   ++|+|+++.|++++.++..+++||
T Consensus        80 ~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Df  156 (272)
T cd05075          80 SPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKS---FIHRDLAARNCMLNENMNVCVADF  156 (272)
T ss_pred             CcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCC---eeccccchhheEEcCCCCEEECCC
Confidence            3567888876432              34789999999999999999999988   999999999999999999999999


Q ss_pred             cceeeee
Q 043694           76 GLARIFV   82 (142)
Q Consensus        76 g~~~~~~   82 (142)
                      |++....
T Consensus       157 g~~~~~~  163 (272)
T cd05075         157 GLSKKIY  163 (272)
T ss_pred             CcccccC
Confidence            9987653

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.36  E-value=1.2e-12  Score=93.40  Aligned_cols=69  Identities=30%  Similarity=0.500  Sum_probs=59.9

Q ss_pred             hheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           11 LYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        11 ~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+++++|..++         ...+++..+..++.|++.|+.|||+.+   ++|+|+++.|++++.+..++++|||++..+
T Consensus        83 ~~~v~e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~---iiH~dlkp~Nill~~~~~~kl~DfG~a~~~  159 (316)
T cd05108          83 VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEERR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL  159 (316)
T ss_pred             ceeeeecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHhcC---eeccccchhheEecCCCcEEEccccccccc
Confidence            46777776653         235888899999999999999999998   999999999999999999999999998765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       160 ~  160 (316)
T cd05108         160 G  160 (316)
T ss_pred             c
Confidence            4

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.36  E-value=1.5e-12  Score=90.46  Aligned_cols=70  Identities=31%  Similarity=0.501  Sum_probs=62.1

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+++||.+++         ...+++.++..++.+++.|+.|||+.+   ++|+|+++.|++++.++..+++|||++..
T Consensus        79 ~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~---i~H~di~p~nili~~~~~~~l~dfg~~~~  155 (266)
T cd05033          79 PVMIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMN---YVHRDLAARNILVNSNLVCKVSDFGLSRR  155 (266)
T ss_pred             ceEEEEEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCcceEEEcCCCCEEECccchhhc
Confidence            468899998763         235899999999999999999999988   99999999999999999999999998876


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       156 ~~  157 (266)
T cd05033         156 LE  157 (266)
T ss_pred             cc
Confidence            54

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.35  E-value=2.4e-12  Score=90.12  Aligned_cols=70  Identities=30%  Similarity=0.496  Sum_probs=60.9

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..+++++|.+++         ...+++..+..++.|++.|+.|+|+.+   ++|+|+++.|++++.+..++++|||+++.
T Consensus        82 ~~~l~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~---iiH~dlkp~Nil~~~~~~~kL~dfG~~~~  158 (279)
T cd05109          82 TVQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEEVR---LVHRDLAARNVLVKSPNHVKITDFGLARL  158 (279)
T ss_pred             CcEEEEEcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccccccceEEEcCCCcEEECCCCceee
Confidence            356788887653         345899999999999999999999998   99999999999999889999999999876


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      +.
T Consensus       159 ~~  160 (279)
T cd05109         159 LD  160 (279)
T ss_pred             cc
Confidence            54

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.35  E-value=1.7e-12  Score=93.24  Aligned_cols=70  Identities=23%  Similarity=0.331  Sum_probs=62.3

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+++||+.++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        92 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~  168 (329)
T PTZ00263         92 RVYFLLEFVVGGELFTHLRKAGRFPNDVAKFYHAELVLAFEYLHSKD---IIYRDLKPENLLLDNKGHVKVTDFGFAKKV  168 (329)
T ss_pred             EEEEEEcCCCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHEEECCCCCEEEeeccCceEc
Confidence            5789999987642        45888899999999999999999998   999999999999999999999999998765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       169 ~  169 (329)
T PTZ00263        169 P  169 (329)
T ss_pred             C
Confidence            4

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.35  E-value=1.4e-12  Score=91.83  Aligned_cols=55  Identities=42%  Similarity=0.620  Sum_probs=51.1

Q ss_pred             ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           24 ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        24 ~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+++.++..++.+++.|+.|+|+.+   ++|+|+++.|++++.++..++.|||+++..
T Consensus       123 ~l~~~~~~~i~~~i~~~l~~LH~~~---ivH~dikp~nill~~~~~~kl~dfg~~~~~  177 (290)
T cd05045         123 ALTMGDLISFAWQISRGMQYLAEMK---LVHRDLAARNVLVAEGRKMKISDFGLSRDV  177 (290)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHCC---eehhhhhhheEEEcCCCcEEeccccccccc
Confidence            4788999999999999999999988   999999999999999999999999988754

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.35  E-value=1.2e-12  Score=92.49  Aligned_cols=125  Identities=23%  Similarity=0.268  Sum_probs=92.8

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..+++||||..++.        ..|++.+...+..+|++|+.|||+++   ++.+|++..|+++++++.+|+.|||+++.
T Consensus       241 drlCFVMeyanGGeLf~HLsrer~FsE~RtRFYGaEIvsAL~YLHs~~---ivYRDlKLENLlLDkDGHIKitDFGLCKE  317 (516)
T KOG0690|consen  241 DRLCFVMEYANGGELFFHLSRERVFSEDRTRFYGAEIVSALGYLHSRN---IVYRDLKLENLLLDKDGHIKITDFGLCKE  317 (516)
T ss_pred             ceEEEEEEEccCceEeeehhhhhcccchhhhhhhHHHHHHhhhhhhCC---eeeeechhhhheeccCCceEeeecccchh
Confidence            35889999987654        44889988899999999999999999   99999999999999999999999999876


Q ss_pred             eecCcccccccccccchh--------------hhhhhhcCC-cceeecCCCCCCCCHHHHHHHHHHHHhccCccC
Q 043694           81 FVKDDLEANTNRIVGTQE--------------SYNLWKDGK-GRKLMDPSLDDTHSSWKLLTCLQIALLCVQENS  140 (142)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~--------------~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~i~~~C~~~~p  140 (142)
                      -..-  ....+..||+|.              +.+.|..|. +.+++--++.  +....-.++.++.+.|--..|
T Consensus       318 ~I~~--g~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLP--Fyn~dh~kLFeLIl~ed~kFP  388 (516)
T KOG0690|consen  318 EIKY--GDTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLP--FYNKDHEKLFELILMEDLKFP  388 (516)
T ss_pred             cccc--cceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCc--ccccchhHHHHHHHhhhccCC
Confidence            4432  234567899988              445555554 2244444442  333445567777777755554

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.35  E-value=1.2e-12  Score=93.96  Aligned_cols=68  Identities=28%  Similarity=0.377  Sum_probs=61.8

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.|+|+||++++.        ..+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||++..
T Consensus        70 ~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~~---ivHrDlkp~Nili~~~~~~kl~Dfg~~~~  145 (327)
T cd05617          70 RLFLVIEYVNGGDLMFHMQRQRKLPEEHARFYAAEICIALNFLHERG---IIYRDLKLDNVLLDADGHIKLTDYGMCKE  145 (327)
T ss_pred             EEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHEEEeCCCCEEEecccccee
Confidence            4789999987643        46999999999999999999999998   99999999999999999999999998764

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.35  E-value=3.1e-12  Score=91.77  Aligned_cols=69  Identities=33%  Similarity=0.498  Sum_probs=61.4

Q ss_pred             hhheeeeeCCCc-------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR-------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~-------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+++||+.+.       ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        78 ~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~  153 (338)
T cd07859          78 DIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRALKYIHTAN---VFHRDLKPKNILANADCKLKICDFGLARVA  153 (338)
T ss_pred             eEEEEEecCCCCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEECCCCcEEEccCcccccc
Confidence            368999998652       245899999999999999999999998   999999999999999999999999998754

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.34  E-value=1.6e-12  Score=91.57  Aligned_cols=70  Identities=33%  Similarity=0.495  Sum_probs=61.2

Q ss_pred             hhhheeeeeCCCcc---------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC
Q 043694            9 LYLYLIFDVDPIRR---------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED   67 (142)
Q Consensus         9 ~~~~lv~e~~~~~~---------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~   67 (142)
                      .+.|+++||.+++.                     ..+++.++..++.|++.++.|+|+.+   ++|+++++.||+++.+
T Consensus        80 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~---i~H~dlkp~Nili~~~  156 (288)
T cd05093          80 DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGEN  156 (288)
T ss_pred             CccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecccCcceEEEccC
Confidence            35788999876432                     24899999999999999999999998   9999999999999999


Q ss_pred             CceEEecccceeee
Q 043694           68 LKSKISDFGLARIF   81 (142)
Q Consensus        68 ~~~~l~~fg~~~~~   81 (142)
                      +..+++|||.+...
T Consensus       157 ~~~kl~dfg~~~~~  170 (288)
T cd05093         157 LLVKIGDFGMSRDV  170 (288)
T ss_pred             CcEEeccCCccccc
Confidence            99999999988654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.34  E-value=1.6e-12  Score=93.16  Aligned_cols=69  Identities=33%  Similarity=0.396  Sum_probs=61.0

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+++||++++        ...+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||+++..
T Consensus        74 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~  150 (323)
T cd05584          74 KLYLILEYLSGGELFMHLEREGIFMEDTACFYLSEISLALEHLHQQG---IIYRDLKPENILLDAQGHVKLTDFGLCKES  150 (323)
T ss_pred             eEEEEEeCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEECCCCCEEEeeCcCCeec
Confidence            578999998764        345788888889999999999999998   999999999999999999999999987653

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.34  E-value=1.9e-11  Score=85.99  Aligned_cols=70  Identities=33%  Similarity=0.474  Sum_probs=61.3

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+++||+.++         ...+++.++..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||++..
T Consensus        83 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~---iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~  159 (290)
T cd07862          83 KLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLARI  159 (290)
T ss_pred             cEEEEEccCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHHHEEEcCCCCEEEccccceEe
Confidence            468889987642         234889999999999999999999998   99999999999999999999999999876


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       160 ~~  161 (290)
T cd07862         160 YS  161 (290)
T ss_pred             cc
Confidence            54

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.34  E-value=2.3e-12  Score=92.17  Aligned_cols=68  Identities=29%  Similarity=0.445  Sum_probs=61.3

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.|+|+||++++.        ..+++.+...++.|++.|+.|||+.+   ++|+|+++.|++++.++.++++|||++..
T Consensus        70 ~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~al~~LH~~~---ivHrdikp~Nil~~~~~~~kl~Dfg~~~~  145 (316)
T cd05619          70 NLFFVMEYLNGGDLMFHIQSCHKFDLPRATFYAAEIICGLQFLHSKG---IVYRDLKLDNILLDTDGHIKIADFGMCKE  145 (316)
T ss_pred             EEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCC---eEeCCCCHHHEEECCCCCEEEccCCcceE
Confidence            4789999987643        45899999999999999999999998   99999999999999999999999998765

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.34  E-value=2.1e-12  Score=90.60  Aligned_cols=55  Identities=44%  Similarity=0.645  Sum_probs=50.9

Q ss_pred             ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           24 ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        24 ~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+++.+...++.+++.|+.|+|+.+   ++|+|+++.|++++.+..+++.|||++...
T Consensus       120 ~~~~~~~~~i~~~i~~al~~lH~~~---i~H~dlkp~nili~~~~~~kl~dfg~~~~~  174 (283)
T cd05090         120 SLDHGDFLHIAIQIAAGMEYLSSHF---FVHKDLAARNILIGEQLHVKISDLGLSREI  174 (283)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHhcC---eehhccccceEEEcCCCcEEeccccccccc
Confidence            4788889999999999999999998   999999999999999999999999988654

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.34  E-value=4e-12  Score=95.33  Aligned_cols=54  Identities=54%  Similarity=0.818  Sum_probs=50.8

Q ss_pred             ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           24 ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        24 ~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .|...+.+.|+.||++|+.|||.++   |||+|+++.||+++.+..++|+|||++..
T Consensus       484 kfdm~~~idIAqQiaqGM~YLHAK~---IIHrDLKSnNIFl~~~~kVkIgDFGLatv  537 (678)
T KOG0193|consen  484 KFDMNTTIDIAQQIAQGMDYLHAKN---IIHRDLKSNNIFLHEDLKVKIGDFGLATV  537 (678)
T ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhh---hhhhhccccceEEccCCcEEEecccceee
Confidence            3888999999999999999999999   99999999999999999999999998754

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.33  E-value=2.4e-12  Score=90.28  Aligned_cols=69  Identities=29%  Similarity=0.469  Sum_probs=60.2

Q ss_pred             hhheeeeeCCCcc-----------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC
Q 043694           10 YLYLIFDVDPIRR-----------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE   66 (142)
Q Consensus        10 ~~~lv~e~~~~~~-----------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~   66 (142)
                      ..|+++||.+++.                       ..+++.++..++.|++.|+.|+|+.+   ++|+++++.|++++.
T Consensus        81 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~---i~H~dlkp~nil~~~  157 (280)
T cd05092          81 PLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLH---FVHRDLATRNCLVGQ  157 (280)
T ss_pred             ceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCC---eecccccHhhEEEcC
Confidence            4688888876432                       24889999999999999999999998   999999999999999


Q ss_pred             CCceEEecccceeee
Q 043694           67 DLKSKISDFGLARIF   81 (142)
Q Consensus        67 ~~~~~l~~fg~~~~~   81 (142)
                      ++.++++|||++...
T Consensus       158 ~~~~kL~dfg~~~~~  172 (280)
T cd05092         158 GLVVKIGDFGMSRDI  172 (280)
T ss_pred             CCCEEECCCCceeEc
Confidence            999999999988654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.33  E-value=1.4e-12  Score=93.62  Aligned_cols=68  Identities=25%  Similarity=0.376  Sum_probs=61.7

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ++|+|+||++++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++..
T Consensus        70 ~~~lv~e~~~~g~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nili~~~~~~kL~Dfg~~~~  145 (329)
T cd05588          70 RLFFVIEFVSGGDLMFHMQRQRKLPEEHARFYSAEISLALNFLHERG---IIYRDLKLDNVLLDAEGHIKLTDYGMCKE  145 (329)
T ss_pred             EEEEEEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHeEECCCCCEEECcCccccc
Confidence            5789999987643        46899999999999999999999998   99999999999999999999999998764

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.33  E-value=3e-12  Score=88.77  Aligned_cols=70  Identities=27%  Similarity=0.488  Sum_probs=61.7

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||.+++         ...+++.++..++.+++.|+.|+|+.+   ++|+|+++.|++++.+..++++|||++..
T Consensus        68 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~nil~~~~~~~kl~dfg~~~~  144 (257)
T cd05115          68 ALMLVMEMASGGPLNKFLSGKKDEITVSNVVELMHQVSMGMKYLEGKN---FVHRDLAARNVLLVNQHYAKISDFGLSKA  144 (257)
T ss_pred             CeEEEEEeCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcC---eeecccchheEEEcCCCcEEeccCCcccc
Confidence            468899997653         345899999999999999999999998   99999999999999999999999998875


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      +.
T Consensus       145 ~~  146 (257)
T cd05115         145 LG  146 (257)
T ss_pred             cc
Confidence            43

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.33  E-value=4.2e-12  Score=87.98  Aligned_cols=70  Identities=27%  Similarity=0.454  Sum_probs=62.0

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.|+++||++++         ...+++.++..++.+++.|+.|+|+.+   ++|+++++.|++++.++.++++|||.++.
T Consensus        73 ~~~lv~e~~~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~nili~~~~~~kl~d~g~~~~  149 (256)
T cd05113          73 PIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESKQ---FIHRDLAARNCLVDDQGCVKVSDFGLSRY  149 (256)
T ss_pred             CcEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccccCcceEEEcCCCCEEECCCcccee
Confidence            478999997653         246899999999999999999999998   99999999999999999999999998875


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       150 ~~  151 (256)
T cd05113         150 VL  151 (256)
T ss_pred             cC
Confidence            53

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.33  E-value=2.1e-12  Score=90.66  Aligned_cols=72  Identities=29%  Similarity=0.300  Sum_probs=62.8

Q ss_pred             hhhheeeeeCCCcc------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccc
Q 043694            9 LYLYLIFDVDPIRR------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFG   76 (142)
Q Consensus         9 ~~~~lv~e~~~~~~------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg   76 (142)
                      .+.|+++||++++.            ..+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||
T Consensus        66 ~~~~lv~e~~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~~l~dfg  142 (280)
T cd05608          66 TDLCLVMTIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRR---IIYRDLKPENVLLDNDGNVRISDLG  142 (280)
T ss_pred             CeEEEEEeCCCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEeeCc
Confidence            35789999987532            34899999999999999999999998   9999999999999999999999999


Q ss_pred             ceeeeec
Q 043694           77 LARIFVK   83 (142)
Q Consensus        77 ~~~~~~~   83 (142)
                      .+..+..
T Consensus       143 ~~~~~~~  149 (280)
T cd05608         143 LAVELKD  149 (280)
T ss_pred             cceecCC
Confidence            9876543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.33  E-value=2.8e-12  Score=92.87  Aligned_cols=70  Identities=27%  Similarity=0.499  Sum_probs=61.5

Q ss_pred             hhheeeeeCCCcc----cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIRR----FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~~----~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .+|+++||++++.    ...++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++..+.
T Consensus       146 ~~~lv~e~~~~~~L~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~  219 (353)
T PLN00034        146 EIQVLLEFMDGGSLEGTHIADEQFLADVARQILSGIAYLHRRH---IVHRDIKPSNLLINSAKNVKIADFGVSRILA  219 (353)
T ss_pred             eEEEEEecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHCC---EeecCCCHHHEEEcCCCCEEEcccccceecc
Confidence            4789999988653    33677788899999999999999998   9999999999999999999999999987653

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.33  E-value=2.6e-12  Score=88.99  Aligned_cols=70  Identities=29%  Similarity=0.495  Sum_probs=61.3

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..++++||.+++        ...+++..+..++.|++.|+.|+|+.+   ++|+|+++.|++++.+..++++|||.+..+
T Consensus        69 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~---i~H~dlkp~nill~~~~~~kl~Dfg~~~~~  145 (257)
T cd05116          69 SWMLVMELAELGPLNKFLQKNKHVTEKNITELVHQVSMGMKYLEETN---FVHRDLAARNVLLVTQHYAKISDFGLSKAL  145 (257)
T ss_pred             CcEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccchhhEEEcCCCeEEECCCcccccc
Confidence            357899997754        245899999999999999999999998   999999999999999999999999988765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       146 ~  146 (257)
T cd05116         146 G  146 (257)
T ss_pred             C
Confidence            3

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.33  E-value=4.3e-12  Score=88.16  Aligned_cols=70  Identities=29%  Similarity=0.470  Sum_probs=61.3

Q ss_pred             hhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ..|+++||.+++          ...+++..+..++.|++.|+.|+|+.+   ++|+|+++.|++++.++.++++|||.+.
T Consensus        76 ~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~---i~H~dlkp~nil~~~~~~~kl~df~~~~  152 (263)
T cd05052          76 PFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSR  152 (263)
T ss_pred             CcEEEEEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhCC---EeecccCcceEEEcCCCcEEeCCCcccc
Confidence            468899987653          234899999999999999999999998   9999999999999999999999999887


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      ...
T Consensus       153 ~~~  155 (263)
T cd05052         153 LMT  155 (263)
T ss_pred             ccc
Confidence            654

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.33  E-value=1.8e-12  Score=92.90  Aligned_cols=68  Identities=26%  Similarity=0.414  Sum_probs=61.7

Q ss_pred             hhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.|+|+||++++.       ..+++..+..++.+++.|+.|+|+.+   ++|+|+++.||+++.++.+++.|||++..
T Consensus        76 ~~~lv~E~~~~~~L~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~~---ivHrdlkp~Nill~~~~~~kL~Dfg~~~~  150 (324)
T cd05589          76 HVCFVMEYAAGGDLMMHIHTDVFSEPRAVFYAACVVLGLQYLHENK---IVYRDLKLDNLLLDTEGFVKIADFGLCKE  150 (324)
T ss_pred             EEEEEEcCCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eEecCCCHHHeEECCCCcEEeCcccCCcc
Confidence            5789999987643       46899999999999999999999998   99999999999999999999999998764

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.33  E-value=3.4e-12  Score=88.92  Aligned_cols=69  Identities=23%  Similarity=0.339  Sum_probs=61.2

Q ss_pred             hhhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            9 LYLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      .+.|+|+||++++         ...+++.++..++.+++.|+.|+|+.+   ++|+|+++.|++++.+..+++++||...
T Consensus        79 ~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~lH~~~---iiH~dikp~nili~~~~~~~l~dfg~~~  155 (266)
T cd05064          79 NTMMIVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSEMG---YVHKGLAAHKVLVNSDLVCKISGFRRLQ  155 (266)
T ss_pred             CCcEEEEEeCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EeeccccHhhEEEcCCCcEEECCCcccc
Confidence            3688999998763         245899999999999999999999998   9999999999999999999999999765


Q ss_pred             e
Q 043694           80 I   80 (142)
Q Consensus        80 ~   80 (142)
                      .
T Consensus       156 ~  156 (266)
T cd05064         156 E  156 (266)
T ss_pred             c
Confidence            4

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.32  E-value=2.5e-12  Score=95.06  Aligned_cols=70  Identities=30%  Similarity=0.401  Sum_probs=64.6

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .|+||||||.++|.        ..|++.....++.+.+.|+.-+|..+   +||+|++|.|++++..+.+|++|||++.-
T Consensus       214 ~~LYLiMEylPGGD~mTLL~~~~~L~e~~arfYiaE~vlAI~~iH~~g---yIHRDIKPdNlLiD~~GHiKLSDFGLs~g  290 (550)
T KOG0605|consen  214 EYLYLIMEYLPGGDMMTLLMRKDTLTEDWARFYIAETVLAIESIHQLG---YIHRDIKPDNLLIDAKGHIKLSDFGLSTG  290 (550)
T ss_pred             CeeEEEEEecCCccHHHHHHhcCcCchHHHHHHHHHHHHHHHHHHHcC---cccccCChhheeecCCCCEeeccccccch
Confidence            47999999999865        56999999999999999999999999   99999999999999999999999998854


Q ss_pred             e
Q 043694           81 F   81 (142)
Q Consensus        81 ~   81 (142)
                      +
T Consensus       291 l  291 (550)
T KOG0605|consen  291 L  291 (550)
T ss_pred             h
Confidence            3

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.32  E-value=3.2e-12  Score=101.37  Aligned_cols=86  Identities=29%  Similarity=0.361  Sum_probs=72.2

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .|+|+||||+++|.        .+++++-...++.+++.|+.-+|.-+   ++|||++|.|++++..|.++++|||.+..
T Consensus       148 ~~LYlVMdY~pGGDlltLlSk~~~~pE~~ArFY~aEiVlAldslH~mg---yVHRDiKPDNvLld~~GHikLADFGsClk  224 (1317)
T KOG0612|consen  148 RYLYLVMDYMPGGDLLTLLSKFDRLPEDWARFYTAEIVLALDSLHSMG---YVHRDIKPDNVLLDKSGHIKLADFGSCLK  224 (1317)
T ss_pred             cceEEEEecccCchHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhcc---ceeccCCcceeEecccCcEeeccchhHHh
Confidence            48999999999864        24888888999999999999999999   99999999999999999999999998877


Q ss_pred             eecCcccccccccccchh
Q 043694           81 FVKDDLEANTNRIVGTQE   98 (142)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~   98 (142)
                      +..... ..+...+|||.
T Consensus       225 m~~dG~-V~s~~aVGTPD  241 (1317)
T KOG0612|consen  225 MDADGT-VRSSVAVGTPD  241 (1317)
T ss_pred             cCCCCc-EEeccccCCCC
Confidence            664432 22445677765

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.32  E-value=2.6e-12  Score=91.90  Aligned_cols=68  Identities=29%  Similarity=0.412  Sum_probs=61.7

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.|+|+||++++.        ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++..
T Consensus        70 ~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~---ivH~dlkp~Nill~~~~~~kl~Dfg~~~~  145 (318)
T cd05570          70 RLFFVMEYVNGGDLMFHIQRSGRFDEPRARFYAAEIVLGLQFLHERG---IIYRDLKLDNVLLDSEGHIKIADFGMCKE  145 (318)
T ss_pred             EEEEEEcCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCC---eEccCCCHHHeEECCCCcEEecccCCCee
Confidence            5789999987643        36999999999999999999999998   99999999999999999999999998765

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.32  E-value=3.5e-12  Score=87.95  Aligned_cols=69  Identities=32%  Similarity=0.461  Sum_probs=60.6

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.|+|+||.+++         ...+++.++..++.|++.|+.|+|+.+   ++|+|+++.|++++.++..++.|||.+..
T Consensus        67 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~---i~H~dl~p~nil~~~~~~~kl~dfg~~~~  143 (252)
T cd05084          67 PIYIVMELVQGGDFLTFLRTEGPRLKVKELIQMVENAAAGMEYLESKH---CIHRDLAARNCLVTEKNVLKISDFGMSRE  143 (252)
T ss_pred             CeEEEEeeccCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccccchheEEEcCCCcEEECccccCcc
Confidence            478999997653         235899999999999999999999998   99999999999999999999999998764


Q ss_pred             e
Q 043694           81 F   81 (142)
Q Consensus        81 ~   81 (142)
                      .
T Consensus       144 ~  144 (252)
T cd05084         144 E  144 (252)
T ss_pred             c
Confidence            3

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.32  E-value=2.1e-12  Score=97.61  Aligned_cols=130  Identities=18%  Similarity=0.230  Sum_probs=94.7

Q ss_pred             hhheeeeeCCC---------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPI---------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~---------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..++|||.++-         +...|+..+...++.|+..++.|||+..   ++|||+.+.||+.......|++|||+++.
T Consensus       464 P~WivmEL~~~GELr~yLq~nk~sL~l~tL~ly~~Qi~talaYLeSkr---fVHRDIAaRNiLVsSp~CVKLaDFGLSR~  540 (974)
T KOG4257|consen  464 PMWIVMELAPLGELREYLQQNKDSLPLRTLTLYCYQICTALAYLESKR---FVHRDIAARNILVSSPQCVKLADFGLSRY  540 (974)
T ss_pred             ceeEEEecccchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhc---hhhhhhhhhheeecCcceeeecccchhhh
Confidence            36788887654         3455899999999999999999999998   99999999999999999999999999998


Q ss_pred             eecCcccccccc---------------------cccchh--hhhhhhcC----------CcceeecCCCCCCCCHHHHHH
Q 043694           81 FVKDDLEANTNR---------------------IVGTQE--SYNLWKDG----------KGRKLMDPSLDDTHSSWKLLT  127 (142)
Q Consensus        81 ~~~~~~~~~~~~---------------------~~g~~~--~~~~~~~~----------~~~~~~d~~~~~~~~~~~~~~  127 (142)
                      +....+...+..                     .+..++  .|+....|          ...-.++.+-+...+++++..
T Consensus       541 ~ed~~yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNsDVI~~iEnGeRlP~P~nCPp~  620 (974)
T KOG4257|consen  541 LEDDAYYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNSDVIGHIENGERLPCPPNCPPA  620 (974)
T ss_pred             ccccchhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccccccceEEEecCCCCCCCCCCCChH
Confidence            776544322110                     011111  23333333          222333333344578889999


Q ss_pred             HHHHHHhccCccCCC
Q 043694          128 CLQIALLCVQENSND  142 (142)
Q Consensus       128 ~~~i~~~C~~~~p~~  142 (142)
                      +..++-+||+.||.+
T Consensus       621 LYslmskcWayeP~k  635 (974)
T KOG4257|consen  621 LYSLMSKCWAYEPSK  635 (974)
T ss_pred             HHHHHHHHhccCccc
Confidence            999999999999964

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.32  E-value=4.6e-12  Score=90.79  Aligned_cols=69  Identities=28%  Similarity=0.352  Sum_probs=61.9

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||++++        ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        70 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~g---ivH~Dlkp~NIll~~~~~~kL~DfG~~~~~  146 (325)
T cd05604          70 KLYFVLDFVNGGELFFHLQRERSFPEPRARFYAAEIASALGYLHSIN---IVYRDLKPENILLDSQGHVVLTDFGLCKEG  146 (325)
T ss_pred             EEEEEEcCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHeEECCCCCEEEeecCCcccC
Confidence            478999998764        356899999999999999999999998   999999999999999999999999987653

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.32  E-value=2.5e-12  Score=90.11  Aligned_cols=55  Identities=36%  Similarity=0.592  Sum_probs=50.8

Q ss_pred             ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           24 ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        24 ~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+++..+..++.|++.|+.|+|+.+   ++|+|+++.|+++..+..++++|||+++..
T Consensus       120 ~~~~~~~~~~~~ql~~aL~~lH~~g---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~  174 (283)
T cd05091         120 TLEPADFVHIVTQIAAGMEFLSSHH---VVHKDLATRNVLVFDKLNVKISDLGLFREV  174 (283)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHcC---ccccccchhheEecCCCceEeccccccccc
Confidence            4788889999999999999999998   999999999999999999999999987654

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.31  E-value=1.7e-12  Score=90.17  Aligned_cols=68  Identities=37%  Similarity=0.554  Sum_probs=58.7

Q ss_pred             hheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           11 LYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        11 ~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .++|+||++.+          ...+++.++..++.|++.|+.|||+.+   ++|+++.+.|++++.+..+|+++||+...
T Consensus        76 ~~lv~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~~---iiH~~l~~~nill~~~~~~Kl~~f~~~~~  152 (259)
T PF07714_consen   76 LFLVMEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSNN---IIHGNLSPSNILLDSNGQVKLSDFGLSRP  152 (259)
T ss_dssp             EEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTT---EEEST-SGGGEEEETTTEEEEESTTTGEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccc
Confidence            67889997753          246999999999999999999999998   99999999999999999999999998876


Q ss_pred             e
Q 043694           81 F   81 (142)
Q Consensus        81 ~   81 (142)
                      .
T Consensus       153 ~  153 (259)
T PF07714_consen  153 I  153 (259)
T ss_dssp             T
T ss_pred             c
Confidence            5

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.31  E-value=4.9e-12  Score=94.34  Aligned_cols=70  Identities=24%  Similarity=0.417  Sum_probs=60.4

Q ss_pred             hhheeeeeCCCc-----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC-CceEEecccc
Q 043694           10 YLYLIFDVDPIR-----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED-LKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~-----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~-~~~~l~~fg~   77 (142)
                      ++|+|+||++.+           ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.+ ..++++|||+
T Consensus       141 ~l~lvmE~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~---IiHrDLKp~NILl~~~~~~vkL~DFGl  217 (440)
T PTZ00036        141 FLNVVMEFIPQTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKF---ICHRDLKPQNLLIDPNTHTLKLCDFGS  217 (440)
T ss_pred             EEEEEEecCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCcCHHHEEEcCCCCceeeecccc
Confidence            567899998752           345888999999999999999999998   9999999999999865 4799999999


Q ss_pred             eeeee
Q 043694           78 ARIFV   82 (142)
Q Consensus        78 ~~~~~   82 (142)
                      ++.+.
T Consensus       218 a~~~~  222 (440)
T PTZ00036        218 AKNLL  222 (440)
T ss_pred             chhcc
Confidence            87654

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.31  E-value=5.2e-12  Score=88.65  Aligned_cols=73  Identities=36%  Similarity=0.516  Sum_probs=62.1

Q ss_pred             hhhheeeeeCCC------------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC----CceEE
Q 043694            9 LYLYLIFDVDPI------------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED----LKSKI   72 (142)
Q Consensus         9 ~~~~lv~e~~~~------------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~----~~~~l   72 (142)
                      .-.++++||.+-            ...-++...+.+++.|++.|+.|||+.+   ++|||++++||++..+    +..|+
T Consensus       101 ~~v~l~fdYAEhDL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NW---vlHRDLKPaNIlvmgdgperG~VKI  177 (438)
T KOG0666|consen  101 KKVWLLFDYAEHDLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNW---VLHRDLKPANILVMGDGPERGRVKI  177 (438)
T ss_pred             ceEEEEehhhhhhHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhh---eeeccCCcceEEEeccCCccCeeEe
Confidence            347788888543            2355888899999999999999999999   9999999999999765    89999


Q ss_pred             ecccceeeeecC
Q 043694           73 SDFGLARIFVKD   84 (142)
Q Consensus        73 ~~fg~~~~~~~~   84 (142)
                      +|+|+++.+...
T Consensus       178 aDlGlaR~~~~p  189 (438)
T KOG0666|consen  178 ADLGLARLFNNP  189 (438)
T ss_pred             ecccHHHHhhcc
Confidence            999999987543

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.31  E-value=7.3e-12  Score=87.95  Aligned_cols=70  Identities=23%  Similarity=0.390  Sum_probs=62.3

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+|+||++++        ...+++..+..++.|++.|+.|+|+.+   ++|+|+++.|++++.++.++++|||++...
T Consensus        74 ~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~---i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~  150 (287)
T cd07848          74 KLYLVFEYVEKNMLELLEEMPNGVPPEKVRSYIYQLIKAIHWCHKND---IVHRDIKPENLLISHNDVLKLCDFGFARNL  150 (287)
T ss_pred             EEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCcEEEeeccCcccc
Confidence            578999998764        245889999999999999999999998   999999999999999999999999998765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       151 ~  151 (287)
T cd07848         151 S  151 (287)
T ss_pred             c
Confidence            4

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.31  E-value=3.7e-12  Score=89.11  Aligned_cols=69  Identities=29%  Similarity=0.458  Sum_probs=59.2

Q ss_pred             hhheeeeeCCCcc------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceE
Q 043694           10 YLYLIFDVDPIRR------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSK   71 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~   71 (142)
                      +.++++||.++++                  ..+++.++..++.+++.|+.|+|+.+   ++|+|+++.|++++.++.++
T Consensus        83 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~---~vH~dlkp~Nil~~~~~~~~  159 (277)
T cd05062          83 PTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANK---FVHRDLAARNCMVAEDFTVK  159 (277)
T ss_pred             CeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCcchheEEEcCCCCEE
Confidence            4678899876531                  23678889999999999999999988   99999999999999999999


Q ss_pred             Eecccceeee
Q 043694           72 ISDFGLARIF   81 (142)
Q Consensus        72 l~~fg~~~~~   81 (142)
                      ++|||++...
T Consensus       160 l~dfg~~~~~  169 (277)
T cd05062         160 IGDFGMTRDI  169 (277)
T ss_pred             ECCCCCcccc
Confidence            9999987644

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.31  E-value=9.9e-12  Score=90.47  Aligned_cols=73  Identities=27%  Similarity=0.466  Sum_probs=63.3

Q ss_pred             hhhheeeeeCCCcccc----------cCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccce
Q 043694            9 LYLYLIFDVDPIRRFI----------LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA   78 (142)
Q Consensus         9 ~~~~lv~e~~~~~~~~----------l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~   78 (142)
                      ..++.||-|+..++..          |++..+..++.+++.|+.|||.++   .||||+++.||+++.++.++++|||.+
T Consensus        97 ~~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~G---~IHRdvKAgnILi~~dG~VkLadFgvs  173 (516)
T KOG0582|consen   97 SELWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQNG---HIHRDVKAGNILIDSDGTVKLADFGVS  173 (516)
T ss_pred             ceeEEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhcC---ceecccccccEEEcCCCcEEEcCceee
Confidence            4577788877665422          899999999999999999999999   999999999999999999999999988


Q ss_pred             eeeecC
Q 043694           79 RIFVKD   84 (142)
Q Consensus        79 ~~~~~~   84 (142)
                      ..+...
T Consensus       174 a~l~~~  179 (516)
T KOG0582|consen  174 ASLFDS  179 (516)
T ss_pred             eeeccc
Confidence            776543

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.31  E-value=1.4e-11  Score=89.05  Aligned_cols=55  Identities=40%  Similarity=0.571  Sum_probs=50.8

Q ss_pred             ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           24 ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        24 ~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+++.++..++.+++.|+.|+|+.+   ++|+|+++.|++++.++.++++|||++...
T Consensus       175 ~~~~~~~~~~~~qi~~al~~lH~~~---i~H~dikp~Nil~~~~~~~kl~dfg~~~~~  229 (343)
T cd05103         175 VLTLEDLICYSFQVAKGMEFLASRK---CIHRDLAARNILLSENNVVKICDFGLARDI  229 (343)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCccCeEEEcCCCcEEEEeccccccc
Confidence            3688888999999999999999998   999999999999999999999999988754

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.30  E-value=8.9e-12  Score=88.06  Aligned_cols=69  Identities=28%  Similarity=0.488  Sum_probs=59.6

Q ss_pred             hhheeeeeCCCcc-------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCce
Q 043694           10 YLYLIFDVDPIRR-------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKS   70 (142)
Q Consensus        10 ~~~lv~e~~~~~~-------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~   70 (142)
                      +.|+++||+.++.                   ..+++.+...++.+++.|+.|+|+.+   ++|+|+++.|++++.++..
T Consensus        93 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~---i~H~dlkp~Nili~~~~~~  169 (296)
T cd05095          93 PLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLN---FVHRDLATRNCLVGKNYTI  169 (296)
T ss_pred             ccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCC---eecccCChheEEEcCCCCE
Confidence            4688899876421                   23677889999999999999999998   9999999999999999999


Q ss_pred             EEecccceeee
Q 043694           71 KISDFGLARIF   81 (142)
Q Consensus        71 ~l~~fg~~~~~   81 (142)
                      ++.|||.+..+
T Consensus       170 ~l~dfg~~~~~  180 (296)
T cd05095         170 KIADFGMSRNL  180 (296)
T ss_pred             EeccCcccccc
Confidence            99999988754

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.30  E-value=3.8e-12  Score=93.15  Aligned_cols=125  Identities=24%  Similarity=0.287  Sum_probs=87.1

Q ss_pred             hheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC---CceEEeccccee
Q 043694           11 LYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED---LKSKISDFGLAR   79 (142)
Q Consensus        11 ~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~---~~~~l~~fg~~~   79 (142)
                      ++-|+|||+++.        ..++++....|+.||+.++.||... +++|||-|+++.||++..+   +.+|+.|||++.
T Consensus       543 FCTVLEYceGNDLDFYLKQhklmSEKEARSIiMQiVnAL~YLNEi-kpPIIHYDLKPgNILLv~GtacGeIKITDFGLSK  621 (775)
T KOG1151|consen  543 FCTVLEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVNALKYLNEI-KPPIIHYDLKPGNILLVNGTACGEIKITDFGLSK  621 (775)
T ss_pred             ceeeeeecCCCchhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc-CCCeeeeccCCccEEEecCcccceeEeeecchhh
Confidence            566889998865        4489999999999999999999664 5779999999999999643   679999999999


Q ss_pred             eeecCcccccccccccchhhhhhhhcCCcceeecCCCCCCCCHHHHHHHHHHHHhcc
Q 043694           80 IFVKDDLEANTNRIVGTQESYNLWKDGKGRKLMDPSLDDTHSSWKLLTCLQIALLCV  136 (142)
Q Consensus        80 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~i~~~C~  136 (142)
                      +..........+....+.++-..|..-...-+|........+...++.+..|...|+
T Consensus       622 IMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQCl  678 (775)
T KOG1151|consen  622 IMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCL  678 (775)
T ss_pred             hccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhh
Confidence            887665544444444445555556555545555433322233334455555555554

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.30  E-value=1.4e-12  Score=96.42  Aligned_cols=99  Identities=27%  Similarity=0.398  Sum_probs=83.0

Q ss_pred             hhHhhH--hhhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEE
Q 043694            3 MLQTVQ--LYLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKI   72 (142)
Q Consensus         3 ~~~~~~--~~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l   72 (142)
                      +++|..  .|.|+++|-|-++        ...|...+...++..+..|+.|||..+   ++.||++|.|++++.++.+|+
T Consensus       485 LYrTfrd~kyvYmLmEaClGGElWTiLrdRg~Fdd~tarF~~acv~EAfeYLH~k~---iIYRDLKPENllLd~~Gy~KL  561 (732)
T KOG0614|consen  485 LYRTFRDSKYVYMLMEACLGGELWTILRDRGSFDDYTARFYVACVLEAFEYLHRKG---IIYRDLKPENLLLDNRGYLKL  561 (732)
T ss_pred             HHHHhccchhhhhhHHhhcCchhhhhhhhcCCcccchhhhhHHHHHHHHHHHHhcC---ceeccCChhheeeccCCceEE
Confidence            345554  4899999987764        466888999999999999999999999   999999999999999999999


Q ss_pred             ecccceeeeecCcccccccccccchh--------------hhhhhhcCC
Q 043694           73 SDFGLARIFVKDDLEANTNRIVGTQE--------------SYNLWKDGK  107 (142)
Q Consensus        73 ~~fg~~~~~~~~~~~~~~~~~~g~~~--------------~~~~~~~~~  107 (142)
                      .|||+++.+..+..   +.+++|||+              +.+.|..|-
T Consensus       562 VDFGFAKki~~g~K---TwTFcGTpEYVAPEIILnKGHD~avDyWaLGI  607 (732)
T KOG0614|consen  562 VDFGFAKKIGSGRK---TWTFCGTPEYVAPEIILNKGHDRAVDYWALGI  607 (732)
T ss_pred             eehhhHHHhccCCc---eeeecCCcccccchhhhccCcchhhHHHHHHH
Confidence            99999998876543   556888877              677787663

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.30  E-value=6.5e-12  Score=88.82  Aligned_cols=54  Identities=41%  Similarity=0.668  Sum_probs=50.1

Q ss_pred             ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           24 ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        24 ~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+++.++..++.|++.|+.|+|+.+   ++|+|+++.|++++.+...++.|||++..
T Consensus       115 ~l~~~~~~~i~~qi~~al~~lH~~~---ivH~dlkp~Nill~~~~~~kl~dfg~~~~  168 (297)
T cd05089         115 TLTSQQLLQFASDVATGMQYLSEKQ---FIHRDLAARNVLVGENLASKIADFGLSRG  168 (297)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCC---cccCcCCcceEEECCCCeEEECCcCCCcc
Confidence            4888999999999999999999988   99999999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.30  E-value=7e-12  Score=87.91  Aligned_cols=70  Identities=31%  Similarity=0.534  Sum_probs=61.8

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+++||.+++         ...+++.++..++.+++.|+.|+|+.+   ++|+++++.||+++.++.++++|||++..
T Consensus        81 ~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH~~~---i~H~dlkp~nili~~~~~~~l~dfg~~~~  157 (284)
T cd05081          81 NLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLGSKR---YVHRDLATRNILVESENRVKIGDFGLTKV  157 (284)
T ss_pred             ceEEEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCCHhhEEECCCCeEEECCCccccc
Confidence            467899998653         234899999999999999999999998   99999999999999999999999999876


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       158 ~~  159 (284)
T cd05081         158 LP  159 (284)
T ss_pred             cc
Confidence            54

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.30  E-value=1.1e-11  Score=87.02  Aligned_cols=71  Identities=28%  Similarity=0.443  Sum_probs=62.2

Q ss_pred             hhhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            9 LYLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      .+.|+++||.+++.         ..+++.++..++.+++.++.|+|+.+   ++|+|+++.|++++.++.+++.|||.+.
T Consensus        81 ~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~lH~~g---i~H~dlkp~Nil~~~~~~~~l~dfg~~~  157 (284)
T cd05079          81 NGIKLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGSRQ---YVHRDLAARNVLVESEHQVKIGDFGLTK  157 (284)
T ss_pred             CceEEEEEccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecccchheEEEcCCCCEEECCCcccc
Confidence            35789999987542         34899999999999999999999998   9999999999999999999999999887


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      .+.
T Consensus       158 ~~~  160 (284)
T cd05079         158 AIE  160 (284)
T ss_pred             ccc
Confidence            553

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.30  E-value=1.5e-11  Score=86.62  Aligned_cols=70  Identities=27%  Similarity=0.461  Sum_probs=60.9

Q ss_pred             hhhheeeeeCCCcc-------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCc
Q 043694            9 LYLYLIFDVDPIRR-------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLK   69 (142)
Q Consensus         9 ~~~~lv~e~~~~~~-------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~   69 (142)
                      .+.++++||..++.                   ..+++..+..++.+++.|+.|||+.+   ++|+|+++.|++++.+..
T Consensus        92 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~---i~H~dlkp~Nili~~~~~  168 (296)
T cd05051          92 PPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLN---FVHRDLATRNCLVGKNYT  168 (296)
T ss_pred             CCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcC---ccccccchhceeecCCCc
Confidence            35788888876431                   25899999999999999999999998   999999999999999999


Q ss_pred             eEEecccceeee
Q 043694           70 SKISDFGLARIF   81 (142)
Q Consensus        70 ~~l~~fg~~~~~   81 (142)
                      ++++|||.+...
T Consensus       169 ~~l~dfg~~~~~  180 (296)
T cd05051         169 IKIADFGMSRNL  180 (296)
T ss_pred             eEEccccceeec
Confidence            999999988754

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.29  E-value=8.6e-12  Score=86.72  Aligned_cols=70  Identities=30%  Similarity=0.512  Sum_probs=62.0

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.|+++||.+++         ...+++.++..++.+++.|+.|+|+.+   ++|+++++.|++++.+...+++|||++..
T Consensus        80 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~---i~H~dlkp~Nili~~~~~~kl~dfg~~~~  156 (268)
T cd05063          80 PAMIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDMN---YVHRDLAARNILVNSNLECKVSDFGLSRV  156 (268)
T ss_pred             CcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccccchhhEEEcCCCcEEECCCcccee
Confidence            468999997753         245899999999999999999999998   99999999999999999999999998876


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       157 ~~  158 (268)
T cd05063         157 LE  158 (268)
T ss_pred             cc
Confidence            54

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.29  E-value=6e-12  Score=87.12  Aligned_cols=70  Identities=37%  Similarity=0.599  Sum_probs=61.7

Q ss_pred             hhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      +.|+++||++++          ...+++.++..++.+++.|+.|+|+.+   ++|+|+++.|++++.+...+++|||.+.
T Consensus        76 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~---i~h~dl~~~nilv~~~~~~kl~d~g~~~  152 (261)
T cd05148          76 PVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQN---SIHRDLAARNILVGEDLVCKVADFGLAR  152 (261)
T ss_pred             CeEEEEeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccccCcceEEEcCCceEEEccccchh
Confidence            468999997652          245899999999999999999999998   9999999999999999999999999886


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      ...
T Consensus       153 ~~~  155 (261)
T cd05148         153 LIK  155 (261)
T ss_pred             hcC
Confidence            553

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.29  E-value=4.7e-12  Score=88.37  Aligned_cols=71  Identities=27%  Similarity=0.413  Sum_probs=60.7

Q ss_pred             hhhheeeeeCCCcc------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCce
Q 043694            9 LYLYLIFDVDPIRR------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKS   70 (142)
Q Consensus         9 ~~~~lv~e~~~~~~------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~   70 (142)
                      .+.|+++||.+++.                  ..+++..+..++.+++.|+.|+|+.+   ++|+++++.|++++.++..
T Consensus        82 ~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~di~p~nill~~~~~~  158 (277)
T cd05032          82 QPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKK---FVHRDLAARNCMVAEDLTV  158 (277)
T ss_pred             CCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccccChheEEEcCCCCE
Confidence            45788999876422                  23678889999999999999999988   9999999999999999999


Q ss_pred             EEecccceeeee
Q 043694           71 KISDFGLARIFV   82 (142)
Q Consensus        71 ~l~~fg~~~~~~   82 (142)
                      ++.|||+++.+.
T Consensus       159 kl~dfg~~~~~~  170 (277)
T cd05032         159 KIGDFGMTRDIY  170 (277)
T ss_pred             EECCcccchhhc
Confidence            999999876543

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.29  E-value=2.8e-12  Score=92.90  Aligned_cols=124  Identities=30%  Similarity=0.412  Sum_probs=91.2

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+.++|||+.++.        ..+++..+.-++.++..|+.|+|.++   .+|+|+++.|+++..++.+++.|||++.++
T Consensus        85 ~LwiiMey~~gGsv~~lL~~~~~~~E~~i~~ilre~l~~l~ylH~~~---kiHrDIKaanil~s~~g~vkl~DfgVa~ql  161 (467)
T KOG0201|consen   85 KLWIIMEYCGGGSVLDLLKSGNILDEFEIAVILREVLKGLDYLHSEK---KIHRDIKAANILLSESGDVKLADFGVAGQL  161 (467)
T ss_pred             cHHHHHHHhcCcchhhhhccCCCCccceeeeehHHHHHHhhhhhhcc---eecccccccceeEeccCcEEEEecceeeee
Confidence            3677889987754        33577777778999999999999999   999999999999998899999999999988


Q ss_pred             ecCcccccccccccchh--------------hhhhhhcC-------------------Ccceee----cCCCCCCCCHHH
Q 043694           82 VKDDLEANTNRIVGTQE--------------SYNLWKDG-------------------KGRKLM----DPSLDDTHSSWK  124 (142)
Q Consensus        82 ~~~~~~~~~~~~~g~~~--------------~~~~~~~~-------------------~~~~~~----d~~~~~~~~~~~  124 (142)
                      .......  ..++|||.              ..+.|+.|                   +....+    -|.+.+.++   
T Consensus       162 ~~~~~rr--~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmrvlflIpk~~PP~L~~~~S---  236 (467)
T KOG0201|consen  162 TNTVKRR--KTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPMRVLFLIPKSAPPRLDGDFS---  236 (467)
T ss_pred             echhhcc--ccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcceEEEeccCCCCCccccccC---
Confidence            7654432  45778766              45566555                   111111    134434333   


Q ss_pred             HHHHHHHHHhccCccCCC
Q 043694          125 LLTCLQIALLCVQENSND  142 (142)
Q Consensus       125 ~~~~~~i~~~C~~~~p~~  142 (142)
                       +.+-+.+..|++.||++
T Consensus       237 -~~~kEFV~~CL~k~P~~  253 (467)
T KOG0201|consen  237 -PPFKEFVEACLDKNPEF  253 (467)
T ss_pred             -HHHHHHHHHHhhcCccc
Confidence             36677778899999974

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.29  E-value=1.6e-11  Score=84.73  Aligned_cols=70  Identities=27%  Similarity=0.454  Sum_probs=62.0

Q ss_pred             hhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ++|+++||++++          ...+++.++..++.+++.++.++|+.+   ++|+|+++.||+++.++.+++.|||++.
T Consensus        74 ~~~lv~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~~---i~H~di~p~nil~~~~~~~~l~df~~~~  150 (257)
T cd08223          74 LLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKH---ILHRDLKTQNVFLTRTNIIKVGDLGIAR  150 (257)
T ss_pred             EEEEEecccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCchhEEEecCCcEEEecccceE
Confidence            578999997653          245899999999999999999999998   9999999999999999999999999887


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      ...
T Consensus       151 ~~~  153 (257)
T cd08223         151 VLE  153 (257)
T ss_pred             Eec
Confidence            653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.29  E-value=7.4e-12  Score=89.24  Aligned_cols=70  Identities=36%  Similarity=0.512  Sum_probs=61.0

Q ss_pred             hhheeeeeCCCcc------------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC
Q 043694           10 YLYLIFDVDPIRR------------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD   65 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~   65 (142)
                      +.|+++||.+++.                        ..+++.++..++.+++.|+.|+|+.+   ++|+++++.|++++
T Consensus        92 ~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~g---i~H~dlkp~Nill~  168 (314)
T cd05099          92 PLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRR---CIHRDLAARNVLVT  168 (314)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCC---eeeccccceeEEEc
Confidence            5788899876531                        34899999999999999999999988   99999999999999


Q ss_pred             CCCceEEecccceeeee
Q 043694           66 EDLKSKISDFGLARIFV   82 (142)
Q Consensus        66 ~~~~~~l~~fg~~~~~~   82 (142)
                      .++.++++|||.++...
T Consensus       169 ~~~~~kL~Dfg~~~~~~  185 (314)
T cd05099         169 EDNVMKIADFGLARGVH  185 (314)
T ss_pred             CCCcEEEcccccccccc
Confidence            99999999999987543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.29  E-value=1.4e-11  Score=85.60  Aligned_cols=70  Identities=30%  Similarity=0.563  Sum_probs=61.6

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      +.|+++||++++.          ..+++.++..++.+++.|+.|+|+.+   ++|+|+++.|++++.++..++.|||.+.
T Consensus        74 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~---i~H~dl~p~Nill~~~~~~~L~dfg~~~  150 (262)
T cd05071          74 PIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLAR  150 (262)
T ss_pred             CcEEEEEcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHCC---ccccccCcccEEEcCCCcEEeccCCcee
Confidence            4689999977632          34789999999999999999999998   9999999999999999999999999887


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      .+.
T Consensus       151 ~~~  153 (262)
T cd05071         151 LIE  153 (262)
T ss_pred             ecc
Confidence            654

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.29  E-value=9.4e-12  Score=85.75  Aligned_cols=72  Identities=36%  Similarity=0.498  Sum_probs=63.6

Q ss_pred             hhhheeeeeCCCc-----------------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceE
Q 043694            9 LYLYLIFDVDPIR-----------------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSK   71 (142)
Q Consensus         9 ~~~~lv~e~~~~~-----------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~   71 (142)
                      ...|+++||++++                 ...+++..+..++.+++.|+.|+|+.+   ++|+|+++.||+++.++.++
T Consensus        69 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~---i~H~di~p~nili~~~~~~~  145 (262)
T cd00192          69 EPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKK---FVHRDLAARNCLVGEDLVVK  145 (262)
T ss_pred             CceEEEEEeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCC---cccCccCcceEEECCCCcEE
Confidence            4578999997542                 266899999999999999999999988   99999999999999999999


Q ss_pred             Eecccceeeeec
Q 043694           72 ISDFGLARIFVK   83 (142)
Q Consensus        72 l~~fg~~~~~~~   83 (142)
                      ++|||.+.....
T Consensus       146 l~dfg~~~~~~~  157 (262)
T cd00192         146 ISDFGLSRDVYD  157 (262)
T ss_pred             Eccccccccccc
Confidence            999998876654

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.28  E-value=8.9e-12  Score=90.88  Aligned_cols=70  Identities=29%  Similarity=0.462  Sum_probs=62.3

Q ss_pred             hhheeeeeCCC-------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPI-------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~-------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      +.|+|+||+.+       ....+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++....
T Consensus        78 ~~~lv~e~~~~~l~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~  154 (372)
T cd07853          78 EIYVVTELMQSDLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHSAG---ILHRDIKPGNLLVNSNCVLKICDFGLARVEE  154 (372)
T ss_pred             eEEEEeeccccCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChHHEEECCCCCEEeccccceeecc
Confidence            57899999764       2356899999999999999999999998   9999999999999999999999999987643

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.28  E-value=7.5e-12  Score=86.54  Aligned_cols=69  Identities=30%  Similarity=0.447  Sum_probs=61.2

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+++||++++         ...+++..+..++.+++.|+.|+|+.+   ++|+++++.|++++.++.++++|||.+..
T Consensus        73 ~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~ni~i~~~~~~kl~d~g~~~~  149 (256)
T cd05114          73 PLYIVTEFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNS---FIHRDLAARNCLVSSTGVVKVSDFGMTRY  149 (256)
T ss_pred             CEEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCC---ccccccCcceEEEcCCCeEEECCCCCccc
Confidence            478999998753         245899999999999999999999998   99999999999999999999999998765


Q ss_pred             e
Q 043694           81 F   81 (142)
Q Consensus        81 ~   81 (142)
                      .
T Consensus       150 ~  150 (256)
T cd05114         150 V  150 (256)
T ss_pred             c
Confidence            4

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.28  E-value=1.1e-11  Score=85.55  Aligned_cols=69  Identities=32%  Similarity=0.544  Sum_probs=60.3

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ..|+++||++++.          ..+++.++..++.+++.|+.|+|+.+   ++|+|+++.|++++.++.++++|||.+.
T Consensus        72 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---~~H~dl~p~nili~~~~~~kl~Dfg~~~  148 (254)
T cd05083          72 GLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKK---LVHRDLAARNILVSEDGVAKVSDFGLAR  148 (254)
T ss_pred             CcEEEEECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccccCcceEEEcCCCcEEECCCccce
Confidence            4688999976532          34789999999999999999999988   9999999999999999999999999876


Q ss_pred             ee
Q 043694           80 IF   81 (142)
Q Consensus        80 ~~   81 (142)
                      ..
T Consensus       149 ~~  150 (254)
T cd05083         149 VG  150 (254)
T ss_pred             ec
Confidence            54

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.28  E-value=9.3e-12  Score=89.45  Aligned_cols=71  Identities=31%  Similarity=0.433  Sum_probs=63.0

Q ss_pred             hhhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.|+|+||++++        ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++..
T Consensus        74 ~~~~lv~e~~~g~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~  150 (333)
T cd05600          74 EYLYLAMEYVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALHELG---YIHRDLKPENFLIDASGHIKLTDFGLSKG  150 (333)
T ss_pred             CEEEEEEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEECCCCCEEEEeCcCCcc
Confidence            3589999998764        345899999999999999999999998   99999999999999999999999998875


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       151 ~~  152 (333)
T cd05600         151 IV  152 (333)
T ss_pred             cc
Confidence            43

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.28  E-value=7.2e-12  Score=88.16  Aligned_cols=71  Identities=31%  Similarity=0.296  Sum_probs=62.4

Q ss_pred             hhhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccce
Q 043694            9 LYLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA   78 (142)
Q Consensus         9 ~~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~   78 (142)
                      .+.|+++||++++          ...+++..+..++.|++.|+.|+|+.+   ++|+|+++.|++++.++.+++.|||++
T Consensus        73 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~~l~Dfg~~  149 (285)
T cd05605          73 DALCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRER---IVYRDLKPENILLDDYGHIRISDLGLA  149 (285)
T ss_pred             CeEEEEEeccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHCC---cEecCCCHHHEEECCCCCEEEeeCCCc
Confidence            3588999998753          235899999999999999999999998   999999999999999999999999988


Q ss_pred             eeee
Q 043694           79 RIFV   82 (142)
Q Consensus        79 ~~~~   82 (142)
                      ....
T Consensus       150 ~~~~  153 (285)
T cd05605         150 VEIP  153 (285)
T ss_pred             eecC
Confidence            7643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.28  E-value=7.6e-12  Score=88.87  Aligned_cols=69  Identities=36%  Similarity=0.528  Sum_probs=60.7

Q ss_pred             hhheeeeeCCCcc------------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC
Q 043694           10 YLYLIFDVDPIRR------------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD   65 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~   65 (142)
                      +.|+++||++++.                        ..+++.++..++.+++.|+.|+|+.+   ++|+|+++.|++++
T Consensus        98 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~g---i~H~dlkp~Nill~  174 (307)
T cd05098          98 PLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKK---CIHRDLAARNVLVT  174 (307)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCC---cccccccHHheEEc
Confidence            5788999976531                        24899999999999999999999988   99999999999999


Q ss_pred             CCCceEEecccceeee
Q 043694           66 EDLKSKISDFGLARIF   81 (142)
Q Consensus        66 ~~~~~~l~~fg~~~~~   81 (142)
                      .++..++.|||.+...
T Consensus       175 ~~~~~kL~dfg~a~~~  190 (307)
T cd05098         175 EDNVMKIADFGLARDI  190 (307)
T ss_pred             CCCcEEECCCcccccc
Confidence            9999999999987654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.28  E-value=1.8e-11  Score=86.96  Aligned_cols=70  Identities=29%  Similarity=0.410  Sum_probs=61.3

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      +.|+++||..++.          ..+++.++..++.+++.|+.|+|+.+   ++|+|+++.|++++.+..++++|||.+.
T Consensus       113 ~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~~l~dfg~~~  189 (302)
T cd05055         113 PILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKN---CIHRDLAARNVLLTHGKIVKICDFGLAR  189 (302)
T ss_pred             ceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eehhhhccceEEEcCCCeEEECCCcccc
Confidence            4789999976532          23899999999999999999999998   9999999999999999999999999887


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      .+.
T Consensus       190 ~~~  192 (302)
T cd05055         190 DIM  192 (302)
T ss_pred             ccc
Confidence            553

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.27  E-value=1.4e-11  Score=87.31  Aligned_cols=70  Identities=29%  Similarity=0.409  Sum_probs=61.2

Q ss_pred             hhhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.|+|+||+.++        ...+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||++..
T Consensus        76 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~dlkp~Nill~~~~~~kl~Dfg~~~~  152 (303)
T cd07869          76 ETLTLVFEYVHTDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRY---ILHRDLKPQNLLISDTGELKLADFGLARA  152 (303)
T ss_pred             CeEEEEEECCCcCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEECCCCccee
Confidence            3578999997642        245888999999999999999999998   99999999999999999999999998865


Q ss_pred             e
Q 043694           81 F   81 (142)
Q Consensus        81 ~   81 (142)
                      .
T Consensus       153 ~  153 (303)
T cd07869         153 K  153 (303)
T ss_pred             c
Confidence            4

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.27  E-value=1.7e-11  Score=84.12  Aligned_cols=70  Identities=16%  Similarity=0.177  Sum_probs=61.5

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.|+++||++++.        ..+++..+..++.+++.|+.|+|+.+   ++|+|+++.|++++.++..++.+||.+..
T Consensus        58 ~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~ql~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~l~df~~~~~  134 (237)
T cd05576          58 DSVFLVLQHAEGGKLWSHISKFLNIPEECVKRWAAEMVVALDALHREG---IVCRDLNPNNILLDDRGHIQLTYFSRWSE  134 (237)
T ss_pred             CeEEEEEecCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHEEEcCCCCEEEecccchhc
Confidence            45789999987643        35899999999999999999999998   99999999999999999999999997654


Q ss_pred             e
Q 043694           81 F   81 (142)
Q Consensus        81 ~   81 (142)
                      .
T Consensus       135 ~  135 (237)
T cd05576         135 V  135 (237)
T ss_pred             c
Confidence            3

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.27  E-value=1.4e-11  Score=93.62  Aligned_cols=84  Identities=24%  Similarity=0.337  Sum_probs=70.1

Q ss_pred             hhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .++++.|||.++.         ..|++.++.-++.+++.++.|||++.   +||+|+++.||++..++.++++|||++..
T Consensus       103 kLwiliEFC~GGAVDaimlEL~r~LtE~QIqvvc~q~ldALn~LHs~~---iIHRDLKAGNiL~TldGdirLADFGVSAK  179 (1187)
T KOG0579|consen  103 KLWILIEFCGGGAVDAIMLELGRVLTEDQIQVVCYQVLDALNWLHSQN---IIHRDLKAGNILLTLDGDIRLADFGVSAK  179 (1187)
T ss_pred             ceEEEEeecCCchHhHHHHHhccccchHHHHHHHHHHHHHHHHHhhcc---hhhhhccccceEEEecCcEeeeccccccc
Confidence            3778899998863         66999999999999999999999999   99999999999999999999999998765


Q ss_pred             eecCcccccccccccchh
Q 043694           81 FVKDDLEANTNRIVGTQE   98 (142)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~   98 (142)
                      ........  .++.|+|+
T Consensus       180 n~~t~qkR--DsFIGTPY  195 (1187)
T KOG0579|consen  180 NKSTRQKR--DSFIGTPY  195 (1187)
T ss_pred             chhHHhhh--ccccCCcc
Confidence            44332222  23667766

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.27  E-value=9.1e-12  Score=87.67  Aligned_cols=70  Identities=29%  Similarity=0.290  Sum_probs=61.5

Q ss_pred             hhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      +.|+++||++++          ...+++..+..++.|++.|+.|+|+.+   ++|+|+++.|++++.+..++++|||++.
T Consensus        74 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~---iiH~dikp~Nili~~~~~~kl~Dfg~~~  150 (285)
T cd05632          74 ALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHREN---TVYRDLKPENILLDDYGHIRISDLGLAV  150 (285)
T ss_pred             EEEEEEEeccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecCCCHHHEEECCCCCEEEecCCcce
Confidence            578899987653          235899999999999999999999998   9999999999999999999999999886


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      ...
T Consensus       151 ~~~  153 (285)
T cd05632         151 KIP  153 (285)
T ss_pred             ecC
Confidence            543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.27  E-value=2.2e-11  Score=87.32  Aligned_cols=69  Identities=28%  Similarity=0.339  Sum_probs=61.2

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+++||++++        ...++......++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        70 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~g---iiHrDlkp~Nili~~~~~~kl~DfG~a~~~  146 (325)
T cd05602          70 KLYFVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLN---IVYRDLKPENILLDSQGHIVLTDFGLCKEN  146 (325)
T ss_pred             eEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHeEECCCCCEEEccCCCCccc
Confidence            478999998764        245788888889999999999999998   999999999999999999999999988653

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.27  E-value=2.8e-12  Score=96.12  Aligned_cols=81  Identities=25%  Similarity=0.377  Sum_probs=65.9

Q ss_pred             HhhhheeeeeCCCccc---------c-cCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccc
Q 043694            8 QLYLYLIFDVDPIRRF---------I-LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus         8 ~~~~~lv~e~~~~~~~---------~-l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      +..+++++||++++..         + +.-+..++++.||++|+.||.+-.   ++|+|+.+.|++.+.++.+|++|||+
T Consensus       607 DePicmI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~n---fVHrd~a~rNcLv~~e~~iKiadfgm  683 (807)
T KOG1094|consen  607 DDPLCMITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESLN---FVHRDLATRNCLVDGEFTIKIADFGM  683 (807)
T ss_pred             CCchHHHHHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhhc---hhhccccccceeecCcccEEecCccc
Confidence            3457889999887531         1 244456679999999999999988   99999999999999999999999999


Q ss_pred             eeeeecCccccccc
Q 043694           78 ARIFVKDDLEANTN   91 (142)
Q Consensus        78 ~~~~~~~~~~~~~~   91 (142)
                      ++.+..+++....+
T Consensus       684 sR~lysg~yy~vqg  697 (807)
T KOG1094|consen  684 SRNLYSGDYYRVQG  697 (807)
T ss_pred             ccccccCCceeeec
Confidence            99887776554443

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.27  E-value=9.2e-12  Score=86.03  Aligned_cols=71  Identities=31%  Similarity=0.508  Sum_probs=62.1

Q ss_pred             hhhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccce
Q 043694            9 LYLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA   78 (142)
Q Consensus         9 ~~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~   78 (142)
                      ...|+++||++++.          ..+++..+..++.+++.|+.|+|+.+   ++|+|+++.||+++.++..+++|||.+
T Consensus        73 ~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~---i~H~di~p~Nili~~~~~~~l~d~g~~  149 (256)
T cd05039          73 NPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKN---FVHRDLAARNVLVSEDLVAKVSDFGLA  149 (256)
T ss_pred             CCeEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---ccchhcccceEEEeCCCCEEEcccccc
Confidence            35788999887522          25899999999999999999999998   999999999999999999999999988


Q ss_pred             eeee
Q 043694           79 RIFV   82 (142)
Q Consensus        79 ~~~~   82 (142)
                      ....
T Consensus       150 ~~~~  153 (256)
T cd05039         150 KEAS  153 (256)
T ss_pred             cccc
Confidence            7654

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.26  E-value=2.2e-11  Score=94.05  Aligned_cols=116  Identities=22%  Similarity=0.291  Sum_probs=83.5

Q ss_pred             ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeeecCccccc--------------
Q 043694           24 ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEAN--------------   89 (142)
Q Consensus        24 ~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~~~~~~~~--------------   89 (142)
                      .++....+.++.||+.|++||++..   ++|||+.++||++..+..+|++|||+++..........              
T Consensus       414 ~L~~~dLlsfa~QIa~GMe~L~~~~---~vHRDLAaRNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmAp  490 (609)
T KOG0200|consen  414 ALTTKDLLSFAYQIANGMEYLASVP---CVHRDLAARNVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAP  490 (609)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHhhCC---ccchhhhhhhEEecCCCEEEEccccceeccCCCCceEecCCCCccceeecCH
Confidence            4889999999999999999999988   99999999999999999999999999985443322110              


Q ss_pred             ---------ccccccchh--hhhhhhcCC-----------cceeecCCCCCCCCHHHHHHHHHHHHhccCccCCC
Q 043694           90 ---------TNRIVGTQE--SYNLWKDGK-----------GRKLMDPSLDDTHSSWKLLTCLQIALLCVQENSND  142 (142)
Q Consensus        90 ---------~~~~~g~~~--~~~~~~~~~-----------~~~~~d~~~~~~~~~~~~~~~~~i~~~C~~~~p~~  142 (142)
                               ..+.+.++|  .|+..+.|.           +.+.+.++.+.+.+..+..++..++..||+.+|++
T Consensus       491 Esl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~~~~~l~~~l~~G~r~~~P~~c~~eiY~iM~~CW~~~p~~  565 (609)
T KOG0200|consen  491 ESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIPPTEELLEFLKEGNRMEQPEHCSDEIYDLMKSCWNADPED  565 (609)
T ss_pred             HHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhCCCccc
Confidence                     111122222  222222221           11123344556778888899999999999999974

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.26  E-value=2.1e-11  Score=84.80  Aligned_cols=69  Identities=19%  Similarity=0.243  Sum_probs=58.3

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCc-------eEEe
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLK-------SKIS   73 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~-------~~l~   73 (142)
                      +.++++||++++         ...+++..+..++.|++.|+.|+|+.+   ++|+|+++.|++++.++.       +++.
T Consensus        78 ~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~Nill~~~~~~~~~~~~~~l~  154 (262)
T cd05077          78 ENIMVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLEDKD---LVHGNVCTKNILLAREGIDGECGPFIKLS  154 (262)
T ss_pred             CCEEEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhCC---eECCCCCcccEEEecCCccCCCCceeEeC
Confidence            568899987653         245899999999999999999999998   999999999999975543       7899


Q ss_pred             cccceeee
Q 043694           74 DFGLARIF   81 (142)
Q Consensus        74 ~fg~~~~~   81 (142)
                      +||.+...
T Consensus       155 d~g~~~~~  162 (262)
T cd05077         155 DPGIPITV  162 (262)
T ss_pred             CCCCCccc
Confidence            99987654

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.26  E-value=1.2e-11  Score=91.30  Aligned_cols=56  Identities=32%  Similarity=0.522  Sum_probs=51.1

Q ss_pred             ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           24 ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        24 ~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .+++.++..++.+++.|+.|+|+.+   ++|+|+++.|++++.+..++++|||++..+.
T Consensus       235 ~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrdlkp~NiLl~~~~~~kL~DfGla~~~~  290 (401)
T cd05107         235 ALSYMDLVGFSYQVANGMEFLASKN---CVHRDLAARNVLICEGKLVKICDFGLARDIM  290 (401)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCC---cCcccCCcceEEEeCCCEEEEEecCcceecc
Confidence            4788889999999999999999988   9999999999999999999999999987643

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.26  E-value=2.8e-11  Score=84.66  Aligned_cols=71  Identities=32%  Similarity=0.425  Sum_probs=62.7

Q ss_pred             hhhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694            9 LYLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus         9 ~~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+.|+|+||++++.       ..+++..+..++.+++.|+.|+|+.+   ++|+++++.|++++.++.+++.|||++..+
T Consensus        75 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~  151 (277)
T cd06642          75 TKLWIIMEYLGGGSALDLLKPGPLEETYIATILREILKGLDYLHSER---KIHRDIKAANVLLSEQGDVKLADFGVAGQL  151 (277)
T ss_pred             CceEEEEEccCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCC---eeccCCChheEEEeCCCCEEEccccccccc
Confidence            35789999987642       45899999999999999999999988   999999999999999999999999988665


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       152 ~  152 (277)
T cd06642         152 T  152 (277)
T ss_pred             c
Confidence            4

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.26  E-value=1.7e-11  Score=84.55  Aligned_cols=71  Identities=24%  Similarity=0.343  Sum_probs=62.1

Q ss_pred             hhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      +.|+++||.+++          ...+++.++..++.+++.++.|+|+.+   ++|+++++.||+++.++.++++|||.+.
T Consensus        73 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~---i~h~dl~~~nili~~~~~~~l~df~~~~  149 (256)
T cd08529          73 KLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKK---ILHRDIKSLNLFLDAYDNVKIGDLGVAK  149 (256)
T ss_pred             EEEEEEEeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCcceEEEeCCCCEEEcccccce
Confidence            578999997652          246889999999999999999999988   9999999999999999999999999877


Q ss_pred             eeec
Q 043694           80 IFVK   83 (142)
Q Consensus        80 ~~~~   83 (142)
                      .+..
T Consensus       150 ~~~~  153 (256)
T cd08529         150 LLSD  153 (256)
T ss_pred             eccC
Confidence            6543

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.26  E-value=1.7e-11  Score=85.94  Aligned_cols=71  Identities=30%  Similarity=0.410  Sum_probs=62.2

Q ss_pred             hhhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccce
Q 043694            9 LYLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA   78 (142)
Q Consensus         9 ~~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~   78 (142)
                      .+.|+++||++++.          ..+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.+..++++|||++
T Consensus        66 ~~~~lv~e~~~g~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~dikp~Nili~~~~~~~l~Dfg~~  142 (277)
T cd05607          66 THLCLVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSMD---IVYRDMKPENVLLDDQGNCRLSDLGLA  142 (277)
T ss_pred             CeEEEEEecCCCCCHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCC---EEEccCChHhEEEcCCCCEEEeeceee
Confidence            35789999987542          34888899999999999999999998   999999999999999999999999988


Q ss_pred             eeee
Q 043694           79 RIFV   82 (142)
Q Consensus        79 ~~~~   82 (142)
                      ....
T Consensus       143 ~~~~  146 (277)
T cd05607         143 VELK  146 (277)
T ss_pred             eecC
Confidence            7654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.26  E-value=2.2e-11  Score=87.57  Aligned_cols=56  Identities=39%  Similarity=0.576  Sum_probs=51.4

Q ss_pred             ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           24 ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        24 ~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .+++.++..++.|++.|+.|+|+.+   ++|+|+++.|++++.++..++.|||.++...
T Consensus       130 ~l~~~~~~~~~~qi~~al~~LH~~g---ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~  185 (334)
T cd05100         130 QLTFKDLVSCAYQVARGMEYLASQK---CIHRDLAARNVLVTEDNVMKIADFGLARDVH  185 (334)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHCC---eeccccccceEEEcCCCcEEECCcccceecc
Confidence            3788999999999999999999998   9999999999999999999999999887543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.25  E-value=1.2e-11  Score=86.54  Aligned_cols=69  Identities=29%  Similarity=0.423  Sum_probs=58.5

Q ss_pred             hhheeeeeCCCcc---------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC---ceE
Q 043694           10 YLYLIFDVDPIRR---------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL---KSK   71 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~---~~~   71 (142)
                      +.|+++||.+++.               ..+++.++..++.+++.|+.|||+.+   ++|+|+++.||+++.++   ..+
T Consensus        83 ~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~dlkp~nil~~~~~~~~~~k  159 (277)
T cd05036          83 PRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENH---FIHRDIAARNCLLTCKGPGRVAK  159 (277)
T ss_pred             CcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccchheEEEeccCCCcceE
Confidence            4678999876421               24899999999999999999999998   99999999999997543   589


Q ss_pred             Eecccceeee
Q 043694           72 ISDFGLARIF   81 (142)
Q Consensus        72 l~~fg~~~~~   81 (142)
                      ++|||.+...
T Consensus       160 l~dfg~~~~~  169 (277)
T cd05036         160 IADFGMARDI  169 (277)
T ss_pred             eccCcccccc
Confidence            9999988765

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.25  E-value=2e-11  Score=85.44  Aligned_cols=56  Identities=36%  Similarity=0.558  Sum_probs=52.1

Q ss_pred             cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           23 FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        23 ~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..+++.++..++.+++.|+.|||+.+   ++|+++++.|++++.+..++++|||+++.+
T Consensus       112 ~~l~~~~~~~i~~~i~~~l~~LH~~~---i~H~di~p~nil~~~~~~~kl~d~g~~~~~  167 (280)
T cd05043         112 QALSTQQLVHMAIQIACGMSYLHKRG---VIHKDIAARNCVIDEELQVKITDNALSRDL  167 (280)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccCHhhEEEcCCCcEEECCCCCcccc
Confidence            45889999999999999999999988   999999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.25  E-value=4.1e-11  Score=83.77  Aligned_cols=70  Identities=36%  Similarity=0.493  Sum_probs=62.0

Q ss_pred             hhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.|+++||++++.         ..+++.++..++.+++.|+.|+|+.+   ++|+|+++.|++++.++.++++|||.+..
T Consensus        82 ~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~  158 (284)
T cd05038          82 SLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGSQR---YIHRDLAARNILVESEDLVKISDFGLAKV  158 (284)
T ss_pred             ceEEEEecCCCCCHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHhEEEcCCCCEEEcccccccc
Confidence            5788999986532         24899999999999999999999988   99999999999999999999999998876


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       159 ~~  160 (284)
T cd05038         159 LP  160 (284)
T ss_pred             cc
Confidence            55

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.25  E-value=1.5e-11  Score=89.26  Aligned_cols=69  Identities=33%  Similarity=0.488  Sum_probs=60.9

Q ss_pred             hhheeeeeCCCcc-----cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR-----FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~-----~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+++||+.++.     ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus       100 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~---ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~  173 (359)
T cd07876         100 DVYLVMELMDANLCQVIHMELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTA  173 (359)
T ss_pred             eeEEEEeCCCcCHHHHHhccCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEECCCCCEEEecCCCcccc
Confidence            4689999987642     34788899999999999999999998   999999999999999999999999988654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.25  E-value=1.7e-11  Score=85.86  Aligned_cols=70  Identities=30%  Similarity=0.498  Sum_probs=61.2

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..++++||.+++         ...+++..+..++.|++.|+.|+|+.+   ++|+|+++.|++++.++.+++.|||.+..
T Consensus        82 ~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---i~H~di~p~nil~~~~~~~kL~dfg~~~~  158 (279)
T cd05057          82 QVQLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEKR---LVHRDLAARNVLVKTPQHVKITDFGLAKL  158 (279)
T ss_pred             ceEEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCC---EEecccCcceEEEcCCCeEEECCCccccc
Confidence            457888887653         245899999999999999999999988   99999999999999999999999998876


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      +.
T Consensus       159 ~~  160 (279)
T cd05057         159 LD  160 (279)
T ss_pred             cc
Confidence            54

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.25  E-value=1.6e-11  Score=84.47  Aligned_cols=69  Identities=32%  Similarity=0.485  Sum_probs=60.1

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.|+++||..++         ...+++..+..++.+++.++.|+|+.+   ++|+++++.|++++.++..++.|||.+..
T Consensus        66 ~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~---i~h~di~p~nili~~~~~~~l~d~g~~~~  142 (251)
T cd05041          66 PIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKN---CIHRDLAARNCLVGENNVLKISDFGMSRE  142 (251)
T ss_pred             CeEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---EehhhcCcceEEEcCCCcEEEeecccccc
Confidence            468889987543         345788999999999999999999998   99999999999999999999999998765


Q ss_pred             e
Q 043694           81 F   81 (142)
Q Consensus        81 ~   81 (142)
                      .
T Consensus       143 ~  143 (251)
T cd05041         143 E  143 (251)
T ss_pred             c
Confidence            4

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.25  E-value=2e-11  Score=84.61  Aligned_cols=70  Identities=30%  Similarity=0.527  Sum_probs=61.3

Q ss_pred             hhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ..|+++||.+++          ...+++.++..++.+++.|+.++|+.+   ++|+|+++.|++++.++..+++|||++.
T Consensus        75 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~l~dfg~~~  151 (261)
T cd05068          75 PIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQN---YIHRDLAARNVLVGENNICKVADFGLAR  151 (261)
T ss_pred             CeeeeeecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCCcceEEEcCCCCEEECCcceEE
Confidence            468889987542          235899999999999999999999998   9999999999999999999999999887


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      ...
T Consensus       152 ~~~  154 (261)
T cd05068         152 VIK  154 (261)
T ss_pred             Ecc
Confidence            654

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.25  E-value=1.2e-11  Score=87.79  Aligned_cols=69  Identities=30%  Similarity=0.527  Sum_probs=59.6

Q ss_pred             hheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           11 LYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        11 ~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+++++|++++         ...+++..+..++.|++.|+.|+|+.+   ++|+++++.|++++.+..++++|||++...
T Consensus        83 ~~~v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~---ivH~dikp~Nill~~~~~~kL~Dfg~~~~~  159 (303)
T cd05110          83 IQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEERR---LVHRDLAARNVLVKSPNHVKITDFGLARLL  159 (303)
T ss_pred             ceeeehhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHhhcC---eeccccccceeeecCCCceEEccccccccc
Confidence            45777877653         235789999999999999999999998   999999999999998899999999998765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       160 ~  160 (303)
T cd05110         160 E  160 (303)
T ss_pred             c
Confidence            4

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.25  E-value=5.2e-12  Score=96.47  Aligned_cols=129  Identities=23%  Similarity=0.297  Sum_probs=92.1

Q ss_pred             hheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           11 LYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        11 ~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .-+|+|.++.++          ..|--...-.++.|||.|+.||..+.   ++|||+.+.|+++.....+||+|||+.+-
T Consensus       185 ~mMV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLeskr---lvHRDLAARNlllasprtVKI~DFGLmRa  261 (1039)
T KOG0199|consen  185 AMMVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESKR---LVHRDLAARNLLLASPRTVKICDFGLMRA  261 (1039)
T ss_pred             hhHHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhhh---hhhhhhhhhhheecccceeeeecccceec
Confidence            456677655433          44666777789999999999999998   99999999999999999999999999987


Q ss_pred             eecCccccc-----------------------ccccccchh--hhhhhhcC----------CcceeecCCCCCCCCHHHH
Q 043694           81 FVKDDLEAN-----------------------TNRIVGTQE--SYNLWKDG----------KGRKLMDPSLDDTHSSWKL  125 (142)
Q Consensus        81 ~~~~~~~~~-----------------------~~~~~g~~~--~~~~~~~~----------~~~~~~d~~~~~~~~~~~~  125 (142)
                      +........                       ..+.+..+|  .|+.+.-|          .+.+.+|.+-+-..+..+.
T Consensus       262 Lg~ned~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~qIL~~iD~~erLpRPk~cs  341 (1039)
T KOG0199|consen  262 LGENEDMYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGIQILKNIDAGERLPRPKYCS  341 (1039)
T ss_pred             cCCCCcceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCHHHHHHhccccccCCCCCCCh
Confidence            654321110                       001111122  33333322          3556667555556777888


Q ss_pred             HHHHHHHHhccCccCCC
Q 043694          126 LTCLQIALLCVQENSND  142 (142)
Q Consensus       126 ~~~~~i~~~C~~~~p~~  142 (142)
                      ++++.++..||..+|+|
T Consensus       342 edIY~imk~cWah~paD  358 (1039)
T KOG0199|consen  342 EDIYQIMKNCWAHNPAD  358 (1039)
T ss_pred             HHHHHHHHHhccCCccc
Confidence            99999999999999986

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.25  E-value=1.8e-11  Score=85.52  Aligned_cols=69  Identities=29%  Similarity=0.420  Sum_probs=60.5

Q ss_pred             hhheeeeeCCCc----------------------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC
Q 043694           10 YLYLIFDVDPIR----------------------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED   67 (142)
Q Consensus        10 ~~~lv~e~~~~~----------------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~   67 (142)
                      +.|+++||.+++                      ...+++.++..++.+++.++.|+|+.+   ++|+|+++.|++++.+
T Consensus        82 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~---i~h~dlkp~nili~~~  158 (280)
T cd05049          82 PPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQH---FVHRDLATRNCLVGYD  158 (280)
T ss_pred             CeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCC---eeccccccceEEEcCC
Confidence            578889987542                      234789999999999999999999998   9999999999999999


Q ss_pred             CceEEecccceeee
Q 043694           68 LKSKISDFGLARIF   81 (142)
Q Consensus        68 ~~~~l~~fg~~~~~   81 (142)
                      +.++++|||.+..+
T Consensus       159 ~~~kl~d~g~~~~~  172 (280)
T cd05049         159 LVVKIGDFGMSRDV  172 (280)
T ss_pred             CeEEECCcccceec
Confidence            99999999988654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.24  E-value=5.4e-11  Score=83.24  Aligned_cols=71  Identities=31%  Similarity=0.412  Sum_probs=62.3

Q ss_pred             hhhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694            9 LYLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus         9 ~~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+.|+|+||.+++.       ..+++.++..++.+++.++.|+|+.+   ++|+++++.|++++.++..+++|||.+...
T Consensus        75 ~~~~lv~e~~~~~~L~~~i~~~~l~~~~~~~~~~~l~~~l~~lh~~~---ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~  151 (277)
T cd06640          75 TKLWIIMEYLGGGSALDLLRAGPFDEFQIATMLKEILKGLDYLHSEK---KIHRDIKAANVLLSEQGDVKLADFGVAGQL  151 (277)
T ss_pred             CEEEEEEecCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCcCCChhhEEEcCCCCEEEcccccceec
Confidence            35899999987643       45888999999999999999999988   999999999999999999999999988665


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       152 ~  152 (277)
T cd06640         152 T  152 (277)
T ss_pred             c
Confidence            4

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.24  E-value=1.7e-11  Score=84.89  Aligned_cols=71  Identities=32%  Similarity=0.496  Sum_probs=62.1

Q ss_pred             hhhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccce
Q 043694            9 LYLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA   78 (142)
Q Consensus         9 ~~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~   78 (142)
                      .+.|+++||++++          ...+++.++..++.+++.|+.|+|+.+   ++|+++++.|++++.++..++.|||.+
T Consensus        74 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~---i~H~dl~p~nili~~~~~~~l~dfg~~  150 (261)
T cd05072          74 EPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKN---YIHRDLRAANVLVSESLMCKIADFGLA  150 (261)
T ss_pred             CCcEEEEecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccccchhhEEecCCCcEEECCCccc
Confidence            3578999998753          245888999999999999999999988   999999999999999999999999998


Q ss_pred             eeee
Q 043694           79 RIFV   82 (142)
Q Consensus        79 ~~~~   82 (142)
                      ....
T Consensus       151 ~~~~  154 (261)
T cd05072         151 RVIE  154 (261)
T ss_pred             eecC
Confidence            7654

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.24  E-value=8.4e-11  Score=95.02  Aligned_cols=64  Identities=22%  Similarity=0.318  Sum_probs=54.4

Q ss_pred             hhheeeeeCCCcc-----cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEe
Q 043694           10 YLYLIFDVDPIRR-----FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKIS   73 (142)
Q Consensus        10 ~~~lv~e~~~~~~-----~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~   73 (142)
                      ..|+|+||++++.     ..++|.++..++.|++.|+.|+|....+.++|+|+++.||+++.+...++.
T Consensus       757 ~~~lv~Ey~~~g~L~~~l~~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~  825 (968)
T PLN00113        757 GAYLIHEYIEGKNLSEVLRNLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR  825 (968)
T ss_pred             CCEEEEeCCCCCcHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE
Confidence            5789999998764     348999999999999999999997655669999999999999877765543

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.24  E-value=2.5e-11  Score=84.07  Aligned_cols=70  Identities=29%  Similarity=0.552  Sum_probs=61.4

Q ss_pred             hhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ..|+++||.+++          ...+++.++..++.+++.|+.|+|+.+   ++|+++++.|++++.+...++.|||.+.
T Consensus        74 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~---i~H~di~p~Nili~~~~~~~l~dfg~~~  150 (260)
T cd05070          74 PIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMN---YIHRDLRSANILVGDGLVCKIADFGLAR  150 (260)
T ss_pred             CcEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCccceEEEeCCceEEeCCceeee
Confidence            468999987653          234899999999999999999999998   9999999999999999999999999987


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      .+.
T Consensus       151 ~~~  153 (260)
T cd05070         151 LIE  153 (260)
T ss_pred             ecc
Confidence            654

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.24  E-value=7.8e-12  Score=87.61  Aligned_cols=127  Identities=24%  Similarity=0.371  Sum_probs=92.5

Q ss_pred             hheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           11 LYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        11 ~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +++|||||..+         +.+|++..+..++...+.|++|||.-.   -+|||+++.||++..++..|++|||++..+
T Consensus       103 LWIVMEYCGAGSiSDI~R~R~K~L~E~EIs~iL~~TLKGL~YLH~~~---KIHRDIKAGNILLNT~G~AKLADFGVAGQL  179 (502)
T KOG0574|consen  103 LWIVMEYCGAGSISDIMRARRKPLSEQEISAVLRDTLKGLQYLHDLK---KIHRDIKAGNILLNTDGIAKLADFGVAGQL  179 (502)
T ss_pred             eEeehhhcCCCcHHHHHHHhcCCccHHHHHHHHHHHHhHHHHHHHHH---HHHhhcccccEEEcccchhhhhhccccchh
Confidence            78999998764         366999999999999999999999987   789999999999999999999999999988


Q ss_pred             ecCcccccccccccchh--------------hhhhhhcCC-----------------cceeec----CCCCCCCCHHHHH
Q 043694           82 VKDDLEANTNRIVGTQE--------------SYNLWKDGK-----------------GRKLMD----PSLDDTHSSWKLL  126 (142)
Q Consensus        82 ~~~~~~~~~~~~~g~~~--------------~~~~~~~~~-----------------~~~~~d----~~~~~~~~~~~~~  126 (142)
                      .+.....  +...|+|.              ..+.|+.|-                 ..+++-    |..+-+.++.=..
T Consensus       180 TDTMAKR--NTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPMRAIFMIPT~PPPTF~KPE~WS~  257 (502)
T KOG0574|consen  180 TDTMAKR--NTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPMRAIFMIPTKPPPTFKKPEEWSS  257 (502)
T ss_pred             hhhHHhh--CccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccccccceeEeccCCCCCCCCChHhhhh
Confidence            7654332  33667655              566776651                 111211    1111222333344


Q ss_pred             HHHHHHHhccCccCCC
Q 043694          127 TCLQIALLCVQENSND  142 (142)
Q Consensus       127 ~~~~i~~~C~~~~p~~  142 (142)
                      +.-.....|+-..|++
T Consensus       258 ~F~DFi~~CLiK~PE~  273 (502)
T KOG0574|consen  258 EFNDFIRSCLIKKPEE  273 (502)
T ss_pred             HHHHHHHHHhcCCHHH
Confidence            5666677888887763

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.24  E-value=2.3e-11  Score=84.70  Aligned_cols=69  Identities=30%  Similarity=0.441  Sum_probs=61.4

Q ss_pred             hhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      +.|+++||++++          ...+++..+..++.|++.|+.|||+.+   ++|+++++.|++++.+..+++.|||++.
T Consensus        83 ~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~---ivh~dl~~~nili~~~~~~~l~Dfg~~~  159 (272)
T cd06637          83 QLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHK---VIHRDIKGQNVLLTENAEVKLVDFGVSA  159 (272)
T ss_pred             EEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCCHHHEEECCCCCEEEccCCCce
Confidence            468999998752          245899999999999999999999998   9999999999999999999999999986


Q ss_pred             ee
Q 043694           80 IF   81 (142)
Q Consensus        80 ~~   81 (142)
                      ..
T Consensus       160 ~~  161 (272)
T cd06637         160 QL  161 (272)
T ss_pred             ec
Confidence            54

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.24  E-value=6.9e-11  Score=81.60  Aligned_cols=72  Identities=26%  Similarity=0.413  Sum_probs=62.4

Q ss_pred             hhhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccce
Q 043694            9 LYLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA   78 (142)
Q Consensus         9 ~~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~   78 (142)
                      .+.|+++||++++          ...++......++.+++.|+.|+|+.+   ++|+++++.|++++.++..+++|||.+
T Consensus        71 ~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~---i~H~dl~p~nili~~~~~~~l~dfg~~  147 (255)
T cd08219          71 GHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKR---VLHRDIKSKNIFLTQNGKVKLGDFGSA  147 (255)
T ss_pred             CEEEEEEeeCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhCC---cccCCCCcceEEECCCCcEEEcccCcc
Confidence            3578999998753          234788899999999999999999998   999999999999999999999999988


Q ss_pred             eeeec
Q 043694           79 RIFVK   83 (142)
Q Consensus        79 ~~~~~   83 (142)
                      .....
T Consensus       148 ~~~~~  152 (255)
T cd08219         148 RLLTS  152 (255)
T ss_pred             eeecc
Confidence            76543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.24  E-value=2.4e-11  Score=84.60  Aligned_cols=71  Identities=28%  Similarity=0.495  Sum_probs=62.6

Q ss_pred             hhhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            9 LYLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      .+.|+++||++++         ...+++.++..++.+++.|+.|+|+.+   ++|+++++.|++++.+...++.|||.+.
T Consensus        78 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~h~dlkp~nili~~~~~~~l~dfg~~~  154 (267)
T cd05066          78 KPVMIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILVNSNLVCKVSDFGLSR  154 (267)
T ss_pred             CccEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---EeehhhchhcEEECCCCeEEeCCCCccc
Confidence            4578999998764         245899999999999999999999998   9999999999999999999999999887


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      .+.
T Consensus       155 ~~~  157 (267)
T cd05066         155 VLE  157 (267)
T ss_pred             ccc
Confidence            654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.23  E-value=4e-11  Score=84.16  Aligned_cols=70  Identities=31%  Similarity=0.484  Sum_probs=60.8

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.++++||+.+.         ...+++..+..++.|++.|+.|+|+.+   ++|+|+++.|++++.++..+++|||++..
T Consensus        81 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~dikp~Nili~~~~~~kl~dfg~~~~  157 (288)
T cd07863          81 KVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGQVKLADFGLARI  157 (288)
T ss_pred             eEEEEEcccccCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEECccCcccc
Confidence            357888886642         234899999999999999999999998   99999999999999999999999998876


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       158 ~~  159 (288)
T cd07863         158 YS  159 (288)
T ss_pred             cc
Confidence            54

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.23  E-value=8.9e-12  Score=93.63  Aligned_cols=83  Identities=29%  Similarity=0.430  Sum_probs=66.9

Q ss_pred             hheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC-CCceEEecccceeee
Q 043694           11 LYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE-DLKSKISDFGLARIF   81 (142)
Q Consensus        11 ~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~-~~~~~l~~fg~~~~~   81 (142)
                      ..+|.|....|.        +.++.+.+.+|++||+.||.|||++. |||||||++=.||++.. .+..||+|+|++...
T Consensus       118 in~iTEL~TSGtLr~Y~kk~~~vn~kaik~W~RQILkGL~yLHs~~-PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~  196 (632)
T KOG0584|consen  118 INFITELFTSGTLREYRKKHRRVNIKAIKSWCRQILKGLVYLHSQD-PPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLL  196 (632)
T ss_pred             eeeeeecccCCcHHHHHHHhccCCHHHHHHHHHHHHHHhhhhhcCC-CCccccccccceEEEcCCcCceeecchhHHHHh
Confidence            556666655543        44899999999999999999999986 67999999999999975 489999999999876


Q ss_pred             ecCcccccccccccchh
Q 043694           82 VKDDLEANTNRIVGTQE   98 (142)
Q Consensus        82 ~~~~~~~~~~~~~g~~~   98 (142)
                      ....    ..+.+|||.
T Consensus       197 r~s~----aksvIGTPE  209 (632)
T KOG0584|consen  197 RKSH----AKSVIGTPE  209 (632)
T ss_pred             hccc----cceeccCcc
Confidence            5433    334778877

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.23  E-value=3.2e-11  Score=85.33  Aligned_cols=69  Identities=28%  Similarity=0.395  Sum_probs=61.4

Q ss_pred             hhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+|+||.+++.       ..+++.++..++.+++.|+.|+|+.+   ++|+++++.|++++.++.+++.|||.+...
T Consensus        91 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~i~~ql~~aL~~LH~~g---i~H~dLkp~Nill~~~~~~kl~dfg~~~~~  166 (296)
T cd06654          91 ELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQI  166 (296)
T ss_pred             EEEEeecccCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEcCCCCEEECccccchhc
Confidence            5789999987643       34899999999999999999999998   999999999999999999999999987654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.23  E-value=2.3e-11  Score=84.85  Aligned_cols=67  Identities=39%  Similarity=0.678  Sum_probs=59.2

Q ss_pred             hhheeeeeCCCcc------------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC
Q 043694           10 YLYLIFDVDPIRR------------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD   65 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~   65 (142)
                      +.|+++||.++++                        ..+++.++..++.+++.|+.|+|+.+   ++|+|+++.|++++
T Consensus        70 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~---i~H~dikp~nili~  146 (270)
T cd05047          70 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ---FIHRDLAARNILVG  146 (270)
T ss_pred             CceEEEEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccccceEEEc
Confidence            4789999976531                        24789999999999999999999988   99999999999999


Q ss_pred             CCCceEEeccccee
Q 043694           66 EDLKSKISDFGLAR   79 (142)
Q Consensus        66 ~~~~~~l~~fg~~~   79 (142)
                      .+...+++|||++.
T Consensus       147 ~~~~~kl~dfgl~~  160 (270)
T cd05047         147 ENYVAKIADFGLSR  160 (270)
T ss_pred             CCCeEEECCCCCcc
Confidence            99999999999875

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.23  E-value=4.8e-11  Score=82.75  Aligned_cols=70  Identities=31%  Similarity=0.576  Sum_probs=61.3

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      +.|+++||..++.          ..+++..+..++.+++.|+.|+|+.+   ++|+|+++.|++++.++..++.|||.+.
T Consensus        74 ~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~---i~H~dl~~~Nill~~~~~~~l~dfg~~~  150 (260)
T cd05069          74 PIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMN---YIHRDLRAANILVGDNLVCKIADFGLAR  150 (260)
T ss_pred             CcEEEEEcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhCC---EeecccCcceEEEcCCCeEEECCCccce
Confidence            4689999977532          34789999999999999999999998   9999999999999999999999999987


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      ...
T Consensus       151 ~~~  153 (260)
T cd05069         151 LIE  153 (260)
T ss_pred             Ecc
Confidence            653

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.23  E-value=3.1e-11  Score=83.04  Aligned_cols=69  Identities=32%  Similarity=0.483  Sum_probs=60.8

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..++++||.+++         ...+++.++..++.+++.++.|+|+.+   ++|+|+++.|++++.+...++.|||++..
T Consensus        66 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---~~H~dl~p~nili~~~~~~~l~d~g~~~~  142 (250)
T cd05085          66 PIYIVMELVPGGDFLSFLRKKKDELKTKQLVKFALDAAAGMAYLESKN---CIHRDLAARNCLVGENNVLKISDFGMSRQ  142 (250)
T ss_pred             ccEEEEECCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecccChheEEEcCCCeEEECCCcccee
Confidence            478999997653         245889999999999999999999998   99999999999999999999999998865


Q ss_pred             e
Q 043694           81 F   81 (142)
Q Consensus        81 ~   81 (142)
                      .
T Consensus       143 ~  143 (250)
T cd05085         143 E  143 (250)
T ss_pred             c
Confidence            4

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.23  E-value=2e-11  Score=85.74  Aligned_cols=69  Identities=35%  Similarity=0.367  Sum_probs=61.6

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+|+||+.++.        ..+++.++..++.|++.|+.|+|+.+   ++|+|+++.||+++.++..+++|||++...
T Consensus        71 ~~~lv~e~~~~~~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~~---ivH~dikp~Nil~~~~~~~~l~dfg~~~~~  147 (279)
T cd05633          71 KLCFILDLMNGGDLHYHLSQHGVFSEKEMRFYATEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDF  147 (279)
T ss_pred             eEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---cCCCCCCHHHEEECCCCCEEEccCCcceec
Confidence            4688999987643        45899999999999999999999998   999999999999999999999999987654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.23  E-value=3.8e-11  Score=86.28  Aligned_cols=71  Identities=23%  Similarity=0.334  Sum_probs=60.9

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+++||++++.        ..+++..+..++.+++.|+.|+|+..  .++|+|+++.||+++.++.++++|||++..+
T Consensus        77 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~  154 (331)
T cd06649          77 EISICMEHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKH--QIMHRDVKPSNILVNSRGEIKLCDFGVSGQL  154 (331)
T ss_pred             EEEEEeecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhcC--CEEcCCCChhhEEEcCCCcEEEccCcccccc
Confidence            4789999987642        45889999999999999999999852  2999999999999999999999999988755


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       155 ~  155 (331)
T cd06649         155 I  155 (331)
T ss_pred             c
Confidence            3

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.22  E-value=3.4e-11  Score=84.64  Aligned_cols=56  Identities=34%  Similarity=0.576  Sum_probs=51.3

Q ss_pred             ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           24 ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        24 ~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .+++..+..++.+++.|+.|+|+.+   ++|+++++.|++++.++..+++|||.+..+.
T Consensus       126 ~l~~~~~~~~~~~i~~aL~~lH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  181 (288)
T cd05050         126 PLSCTEQLCIAKQVAAGMAYLSERK---FVHRDLATRNCLVGENMVVKIADFGLSRNIY  181 (288)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHhCC---eecccccHhheEecCCCceEECccccceecc
Confidence            4788889999999999999999998   9999999999999999999999999887543

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.22  E-value=2.7e-11  Score=84.31  Aligned_cols=70  Identities=31%  Similarity=0.517  Sum_probs=61.3

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+++||.+++         ...+++.++..++.+++.|+.|+|+.+   ++|+|+++.|++++.+...++.|||++..
T Consensus        79 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH~~g---~~H~dl~p~nili~~~~~~kl~dfg~~~~  155 (269)
T cd05065          79 PVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSEMN---YVHRDLAARNILVNSNLVCKVSDFGLSRF  155 (269)
T ss_pred             ceEEEEecCCCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccChheEEEcCCCcEEECCCccccc
Confidence            468899997653         244889999999999999999999998   99999999999999999999999998765


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      +.
T Consensus       156 ~~  157 (269)
T cd05065         156 LE  157 (269)
T ss_pred             cc
Confidence            53

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.22  E-value=1e-11  Score=84.10  Aligned_cols=126  Identities=24%  Similarity=0.279  Sum_probs=89.7

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ..||++||...+.          ..++......++.|++.|+.|+|...   +||||+++.|++++.++..|++|||.+-
T Consensus        96 riyLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~---VIhRdiKpenlLlg~~~~lkiAdfGwsV  172 (281)
T KOG0580|consen   96 RIYLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKR---VIHRDIKPENLLLGSAGELKIADFGWSV  172 (281)
T ss_pred             eeEEEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCC---cccCCCCHHHhccCCCCCeeccCCCcee
Confidence            4799999977643          45888899999999999999999999   9999999999999999999999999876


Q ss_pred             eeecCcccccccccccchh--------------hhhhhhcCCcceeecC---------------C---CCCCCCHHHHHH
Q 043694           80 IFVKDDLEANTNRIVGTQE--------------SYNLWKDGKGRKLMDP---------------S---LDDTHSSWKLLT  127 (142)
Q Consensus        80 ~~~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~~~~d~---------------~---~~~~~~~~~~~~  127 (142)
                      .-+...+    ...+|+..              ..+.|..|.+..-+--               +   ++-.++......
T Consensus       173 ~~p~~kR----~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~etYkrI~k~~~~~p~~is~~  248 (281)
T KOG0580|consen  173 HAPSNKR----KTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSHSETYKRIRKVDLKFPSTISGG  248 (281)
T ss_pred             ecCCCCc----eeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHccccCCcccChh
Confidence            5442222    23555533              4566655532211110               0   112234445567


Q ss_pred             HHHHHHhccCccCCC
Q 043694          128 CLQIALLCVQENSND  142 (142)
Q Consensus       128 ~~~i~~~C~~~~p~~  142 (142)
                      +.++...|+..+|.+
T Consensus       249 a~dlI~~ll~~~p~~  263 (281)
T KOG0580|consen  249 AADLISRLLVKNPIE  263 (281)
T ss_pred             HHHHHHHHhccCccc
Confidence            778888898888864

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.21  E-value=3.4e-11  Score=83.87  Aligned_cols=56  Identities=32%  Similarity=0.590  Sum_probs=51.6

Q ss_pred             ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           24 ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        24 ~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .+++.....++.+++.|+.|+|+.+   ++|+|+++.|++++.+..+++.|||.+....
T Consensus       109 ~l~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~nili~~~~~~kl~dfg~~~~~~  164 (273)
T cd05074         109 TLPLQTLVRFMIDIASGMEYLSSKN---FIHRDLAARNCMLNENMTVCVADFGLSKKIY  164 (273)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCC---EeecccchhhEEEcCCCCEEECccccccccc
Confidence            4788899999999999999999988   9999999999999999999999999887653

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.21  E-value=2.1e-11  Score=91.44  Aligned_cols=94  Identities=28%  Similarity=0.447  Sum_probs=75.7

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      -+|+|+||..++.        ..++.........|+.++++|||+++   ++|+||+..|++++.+..+||+|||++.++
T Consensus       129 ~lylV~eya~~ge~~~yl~~~gr~~e~~ar~~F~q~vsaveYcH~k~---ivHrdLk~eNilL~~~mnikIaDfgfS~~~  205 (596)
T KOG0586|consen  129 TLYLVMEYASGGELFDYLVKHGRMKEKEARAKFRQIVSAVEYCHSKN---IVHRDLKAENILLDENMNIKIADFGFSTFF  205 (596)
T ss_pred             eeEEEEEeccCchhHHHHHhcccchhhhhhhhhHHHHHHHHHHhhcc---eeccccchhhcccccccceeeeccccceee
Confidence            3899999987743        44777888889999999999999999   999999999999999999999999999888


Q ss_pred             ecCcccccccccccchh---------------hhhhhhcCCcc
Q 043694           82 VKDDLEANTNRIVGTQE---------------SYNLWKDGKGR  109 (142)
Q Consensus        82 ~~~~~~~~~~~~~g~~~---------------~~~~~~~~~~~  109 (142)
                      ..+..   ....+|++.               -.+.|..|.+.
T Consensus       206 ~~~~~---lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvl  245 (596)
T KOG0586|consen  206 DYGLM---LQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVL  245 (596)
T ss_pred             ccccc---ccccCCCCCccChHhhcCcccCCcceehhhhhhhh
Confidence            75443   333555544               46667666544

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.21  E-value=2.6e-11  Score=86.11  Aligned_cols=68  Identities=38%  Similarity=0.646  Sum_probs=59.9

Q ss_pred             hhheeeeeCCCcc------------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC
Q 043694           10 YLYLIFDVDPIRR------------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD   65 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~   65 (142)
                      +.|+++||++++.                        ..+++.++..++.|++.|+.|+|+.+   ++|+|+++.|++++
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~g---i~H~dlkp~Nili~  158 (303)
T cd05088          82 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ---FIHRDLAARNILVG  158 (303)
T ss_pred             CceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCC---ccccccchheEEec
Confidence            5789999976531                        25789999999999999999999998   99999999999999


Q ss_pred             CCCceEEecccceee
Q 043694           66 EDLKSKISDFGLARI   80 (142)
Q Consensus        66 ~~~~~~l~~fg~~~~   80 (142)
                      .++..+++|||++..
T Consensus       159 ~~~~~kl~dfg~~~~  173 (303)
T cd05088         159 ENYVAKIADFGLSRG  173 (303)
T ss_pred             CCCcEEeCccccCcc
Confidence            999999999998753

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.21  E-value=8.7e-11  Score=81.57  Aligned_cols=70  Identities=21%  Similarity=0.392  Sum_probs=61.1

Q ss_pred             hhheeeeeCCCc------------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccc
Q 043694           10 YLYLIFDVDPIR------------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      +.|+++||.+++            ...+++.++..++.+++.|+.|||+.+   ++|+++++.||+++.++.++++|||.
T Consensus        76 ~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dl~p~nili~~~~~~~l~dfg~  152 (267)
T cd08229          76 ELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRR---VMHRDIKPANVFITATGVVKLGDLGL  152 (267)
T ss_pred             eEEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCCEEECcchh
Confidence            578899987653            245899999999999999999999998   99999999999999999999999998


Q ss_pred             eeeee
Q 043694           78 ARIFV   82 (142)
Q Consensus        78 ~~~~~   82 (142)
                      +....
T Consensus       153 ~~~~~  157 (267)
T cd08229         153 GRFFS  157 (267)
T ss_pred             hhccc
Confidence            76543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.21  E-value=1.2e-11  Score=89.53  Aligned_cols=70  Identities=33%  Similarity=0.465  Sum_probs=60.9

Q ss_pred             hhheeeeeCCCcc-----cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIRR-----FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~~-----~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ..|+++||++.+.     ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++..+++|||+++...
T Consensus        96 ~~~lv~e~~~~~l~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~g---ivHrDikp~Nill~~~~~~kl~Dfg~~~~~~  170 (355)
T cd07874          96 DVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAG  170 (355)
T ss_pred             eeEEEhhhhcccHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCChHHEEECCCCCEEEeeCcccccCC
Confidence            3588999976532     34788899999999999999999998   9999999999999999999999999987543

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.21  E-value=3e-11  Score=83.55  Aligned_cols=70  Identities=29%  Similarity=0.505  Sum_probs=61.3

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..++++||..++.        ..+++..+..++.+++.++.|||+.+   ++|+++++.|++++.++..+++|||.+...
T Consensus        69 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lh~~~---i~H~di~p~nili~~~~~~kl~df~~~~~~  145 (257)
T cd05060          69 PLMLVMELAPLGPLLKYLKKRREIPVSDLKELAHQVAMGMAYLESKH---FVHRDLAARNVLLVNRHQAKISDFGMSRAL  145 (257)
T ss_pred             ceEEEEEeCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcC---eeccCcccceEEEcCCCcEEecccccccee
Confidence            3578899876532        35899999999999999999999998   999999999999999999999999988765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       146 ~  146 (257)
T cd05060         146 G  146 (257)
T ss_pred             e
Confidence            4

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.21  E-value=2.6e-11  Score=83.10  Aligned_cols=71  Identities=34%  Similarity=0.686  Sum_probs=63.4

Q ss_pred             hheeeeeCCC--------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           11 LYLIFDVDPI--------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        11 ~~lv~e~~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      +|+|+++|+.        ....|+..++.+++-++..|+.|+|...   ++|||+++.|++++.++..+++|||+++.+.
T Consensus        99 ~ylVf~~cehDLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iHr~k---ilHRDmKaaNvLIt~dgilklADFGlar~fs  175 (376)
T KOG0669|consen   99 FYLVFDFCEHDLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIHRNK---ILHRDMKAANVLITKDGILKLADFGLARAFS  175 (376)
T ss_pred             eeeeHHHhhhhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHhh---HHhhcccHhhEEEcCCceEEeecccccccee
Confidence            8999998663        3356999999999999999999999999   9999999999999999999999999997665


Q ss_pred             cC
Q 043694           83 KD   84 (142)
Q Consensus        83 ~~   84 (142)
                      ..
T Consensus       176 ~~  177 (376)
T KOG0669|consen  176 TS  177 (376)
T ss_pred             cc
Confidence            44

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.21  E-value=4.1e-11  Score=88.16  Aligned_cols=69  Identities=25%  Similarity=0.374  Sum_probs=59.4

Q ss_pred             hhheeeeeCCC-------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPI-------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~-------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.++++++..+       ....+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus       157 ~~~lv~e~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~ylH~~~---IvHrDiKP~NIll~~~~~vkL~DFG~a~~~  232 (391)
T PHA03212        157 FTCLILPRYKTDLYCYLAAKRNIAICDILAIERSVLRAIQYLHENR---IIHRDIKAENIFINHPGDVCLGDFGAACFP  232 (391)
T ss_pred             eeEEEEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCChHhEEEcCCCCEEEEeCCccccc
Confidence            46777777653       2245889999999999999999999998   999999999999999999999999998653

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.21  E-value=2e-11  Score=85.96  Aligned_cols=70  Identities=29%  Similarity=0.309  Sum_probs=61.2

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      +.|+++||.+++.          ..+++.++..++.|++.|+.|+|+.+   ++|+|+++.|++++.++.+++.|||++.
T Consensus        74 ~~~lv~e~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~---iiH~dikp~Nil~~~~~~~~l~Dfg~~~  150 (285)
T cd05630          74 ALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQER---IVYRDLKPENILLDDHGHIRISDLGLAV  150 (285)
T ss_pred             EEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCC---EEeCCCCHHHEEECCCCCEEEeecccee
Confidence            5789999976532          34888999999999999999999988   9999999999999999999999999886


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      ...
T Consensus       151 ~~~  153 (285)
T cd05630         151 HVP  153 (285)
T ss_pred             ecC
Confidence            543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.21  E-value=3.7e-11  Score=83.49  Aligned_cols=69  Identities=35%  Similarity=0.505  Sum_probs=58.9

Q ss_pred             hhheeeeeCCCcc---------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC-----c
Q 043694           10 YLYLIFDVDPIRR---------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL-----K   69 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~-----~   69 (142)
                      +.|+++||.+++.               ..+++.++..++.+++.|+.|+|+.+   ++|+++++.|++++.+.     .
T Consensus        73 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~---i~H~dl~p~nil~~~~~~~~~~~  149 (269)
T cd05044          73 PQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMH---FIHRDLAARNCLVSEKGYDADRV  149 (269)
T ss_pred             CeEEEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCC---cccCCCChheEEEecCCCCCCcc
Confidence            4788899876422               23788999999999999999999988   99999999999998766     8


Q ss_pred             eEEecccceeee
Q 043694           70 SKISDFGLARIF   81 (142)
Q Consensus        70 ~~l~~fg~~~~~   81 (142)
                      +++.|||++...
T Consensus       150 ~~l~dfg~~~~~  161 (269)
T cd05044         150 VKIGDFGLARDI  161 (269)
T ss_pred             eEECCccccccc
Confidence            999999987654

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.20  E-value=7.6e-11  Score=81.73  Aligned_cols=71  Identities=18%  Similarity=0.362  Sum_probs=61.7

Q ss_pred             hhhheeeeeCCCc------------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccc
Q 043694            9 LYLYLIFDVDPIR------------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFG   76 (142)
Q Consensus         9 ~~~~lv~e~~~~~------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg   76 (142)
                      .+.|+++||++++            ...+++.++..++.+++.|+.|+|+.+   ++|+++++.|++++.++..++.|||
T Consensus        75 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~dl~p~nil~~~~~~~~l~d~~  151 (267)
T cd08224          75 NELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKR---IMHRDIKPANVFITATGVVKLGDLG  151 (267)
T ss_pred             CeEEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCC---EecCCcChhhEEECCCCcEEEeccc
Confidence            3578899997653            234789999999999999999999998   9999999999999999999999999


Q ss_pred             ceeeee
Q 043694           77 LARIFV   82 (142)
Q Consensus        77 ~~~~~~   82 (142)
                      .+....
T Consensus       152 ~~~~~~  157 (267)
T cd08224         152 LGRFFS  157 (267)
T ss_pred             eeeecc
Confidence            887654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.20  E-value=2.1e-10  Score=80.00  Aligned_cols=69  Identities=20%  Similarity=0.326  Sum_probs=58.0

Q ss_pred             hhhheeeeeCCCcc------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccc
Q 043694            9 LYLYLIFDVDPIRR------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFG   76 (142)
Q Consensus         9 ~~~~lv~e~~~~~~------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg   76 (142)
                      .+.|+++||++++.            ..+++..+..++.+++.|+.|+|+.+   ++|+|+++.|++++.++.++++|||
T Consensus        68 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~---i~H~dikp~nil~~~~~~~~l~Dfg  144 (268)
T cd05086          68 IPYLLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHN---FLHSDLALRNCFLTSDLTVKVGDYG  144 (268)
T ss_pred             CccEEEEecCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCC---eeccCCccceEEEcCCccEEecccc
Confidence            35789999987532            22455667788999999999999988   9999999999999999999999999


Q ss_pred             ceee
Q 043694           77 LARI   80 (142)
Q Consensus        77 ~~~~   80 (142)
                      ++..
T Consensus       145 ~~~~  148 (268)
T cd05086         145 IGPS  148 (268)
T ss_pred             cccc
Confidence            8653

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.20  E-value=5.7e-11  Score=82.00  Aligned_cols=70  Identities=16%  Similarity=0.192  Sum_probs=60.3

Q ss_pred             hhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC-------ceEEe
Q 043694           10 YLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL-------KSKIS   73 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~-------~~~l~   73 (142)
                      ..|+++||++++.         ..+++..+..++.|++.|+.|+|+.+   ++|+|+++.|++++.+.       .++++
T Consensus        74 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dlkp~Nill~~~~~~~~~~~~~kl~  150 (259)
T cd05037          74 ENIMVEEYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLEDKK---LVHGNVCGKNILVARYGLNEGYVPFIKLS  150 (259)
T ss_pred             CcEEEEEcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCC---eecccCccceEEEecCccccCCceeEEeC
Confidence            4688999987643         25889999999999999999999988   99999999999998766       68999


Q ss_pred             cccceeeee
Q 043694           74 DFGLARIFV   82 (142)
Q Consensus        74 ~fg~~~~~~   82 (142)
                      |||.+....
T Consensus       151 Dfg~a~~~~  159 (259)
T cd05037         151 DPGIPITVL  159 (259)
T ss_pred             CCCcccccc
Confidence            999877643

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.20  E-value=6.7e-11  Score=80.62  Aligned_cols=72  Identities=26%  Similarity=0.306  Sum_probs=61.6

Q ss_pred             HhhhheeeeeCCCc------------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecc
Q 043694            8 QLYLYLIFDVDPIR------------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDF   75 (142)
Q Consensus         8 ~~~~~lv~e~~~~~------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~f   75 (142)
                      .+..|+++.|...+            +..+++.+.+.++.|+++|+.++|+..+ +..|+|++|.||+++..+...+.||
T Consensus        95 ~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~~-~yAH~DiKP~NILls~~~~~vl~D~  173 (302)
T KOG2345|consen   95 KHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKEP-PYAHRDIKPANILLSDSGLPVLMDL  173 (302)
T ss_pred             ceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccCC-cccccCCCcceeEecCCCceEEEec
Confidence            34578888875543            4569999999999999999999999764 6999999999999999999999999


Q ss_pred             cceee
Q 043694           76 GLARI   80 (142)
Q Consensus        76 g~~~~   80 (142)
                      |.+..
T Consensus       174 GS~~~  178 (302)
T KOG2345|consen  174 GSATQ  178 (302)
T ss_pred             cCccc
Confidence            97654

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.20  E-value=4.3e-11  Score=83.86  Aligned_cols=69  Identities=30%  Similarity=0.485  Sum_probs=61.4

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+++||++++        ...+++..+..++.|++.|+.|||+.+   ++|+++++.|++++.++.++++|||.+..+
T Consensus        73 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~---i~H~dl~~~nil~~~~~~~~l~dfg~~~~~  149 (284)
T cd07839          73 KLTLVFEYCDQDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSHN---VLHRDLKPQNLLINKNGELKLADFGLARAF  149 (284)
T ss_pred             ceEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHEEEcCCCcEEECccchhhcc
Confidence            578999997642        355899999999999999999999998   999999999999999999999999987654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.20  E-value=4.4e-11  Score=86.99  Aligned_cols=70  Identities=31%  Similarity=0.460  Sum_probs=61.4

Q ss_pred             hhheeeeeCCCcc-----cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIRR-----FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~~-----~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ..|+|+||+.++.     ..+++.++..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||+++...
T Consensus       103 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~  177 (364)
T cd07875         103 DVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAG  177 (364)
T ss_pred             eEEEEEeCCCCCHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCC---eecCCCCHHHEEECCCCcEEEEeCCCccccC
Confidence            3689999987642     34788899999999999999999998   9999999999999999999999999987543

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.20  E-value=5.9e-11  Score=83.17  Aligned_cols=70  Identities=30%  Similarity=0.467  Sum_probs=62.0

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+++||++++        ...+++.++..++.+++.++.|||+.+   ++|+++++.|++++.++.+++.|||++..+
T Consensus        74 ~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~---i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~  150 (286)
T cd07846          74 RLYLVFEFVDHTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCHSHN---IIHRDIKPENILVSQSGVVKLCDFGFARTL  150 (286)
T ss_pred             eEEEEEecCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEECCCCcEEEEeeeeeeec
Confidence            589999998753        234899999999999999999999998   999999999999999999999999987765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       151 ~  151 (286)
T cd07846         151 A  151 (286)
T ss_pred             c
Confidence            3

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.19  E-value=5.8e-11  Score=85.50  Aligned_cols=71  Identities=23%  Similarity=0.319  Sum_probs=60.9

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhcc-CCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEY-SKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~-~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      .+.|+++||++++.        ..+++..+..++.+++.|+.|+|+. .   ++|+|+++.|++++.++.++++|||++.
T Consensus        76 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~---ivH~dlkp~Nili~~~~~~kL~Dfg~~~  152 (333)
T cd06650          76 GEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHK---IMHRDVKPSNILVNSRGEIKLCDFGVSG  152 (333)
T ss_pred             CEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCC---EEecCCChhhEEEcCCCCEEEeeCCcch
Confidence            35889999987642        3588888899999999999999974 5   9999999999999999999999999876


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      .+.
T Consensus       153 ~~~  155 (333)
T cd06650         153 QLI  155 (333)
T ss_pred             hhh
Confidence            543

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.19  E-value=1.4e-10  Score=81.30  Aligned_cols=69  Identities=22%  Similarity=0.175  Sum_probs=57.7

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC-------ceEEe
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL-------KSKIS   73 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~-------~~~l~   73 (142)
                      +.|+|+||++++         ...+++..+..++.|++.|+.|+|+.+   ++|+|+++.|++++..+       ..+++
T Consensus        90 ~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---iiH~dlkp~Nill~~~~~~~~~~~~~kl~  166 (274)
T cd05076          90 ENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLEDKN---LVHGNVCAKNILLARLGLAEGTSPFIKLS  166 (274)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCC---ccCCCCCcccEEEeccCcccCccceeeec
Confidence            468999998764         245889999999999999999999998   99999999999996532       37899


Q ss_pred             cccceeee
Q 043694           74 DFGLARIF   81 (142)
Q Consensus        74 ~fg~~~~~   81 (142)
                      +||.+...
T Consensus       167 d~g~~~~~  174 (274)
T cd05076         167 DPGVSFTA  174 (274)
T ss_pred             CCcccccc
Confidence            99976543

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.19  E-value=3.3e-11  Score=84.82  Aligned_cols=69  Identities=25%  Similarity=0.422  Sum_probs=58.9

Q ss_pred             hhheeeeeCCCcc------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceE
Q 043694           10 YLYLIFDVDPIRR------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSK   71 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~   71 (142)
                      +.|+++||++++.                  ..+++..+..++.+++.|+.|+|+.+   ++|+++++.|++++.++.++
T Consensus        83 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~---i~H~dikp~nili~~~~~~~  159 (288)
T cd05061          83 PTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKK---FVHRDLAARNCMVAHDFTVK  159 (288)
T ss_pred             CcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCC---CcCCCCChheEEEcCCCcEE
Confidence            5789999976421                  23466778889999999999999998   99999999999999999999


Q ss_pred             Eecccceeee
Q 043694           72 ISDFGLARIF   81 (142)
Q Consensus        72 l~~fg~~~~~   81 (142)
                      ++|||+++..
T Consensus       160 L~Dfg~~~~~  169 (288)
T cd05061         160 IGDFGMTRDI  169 (288)
T ss_pred             ECcCCccccc
Confidence            9999987754

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.19  E-value=7.9e-11  Score=81.91  Aligned_cols=72  Identities=31%  Similarity=0.434  Sum_probs=61.3

Q ss_pred             hhhheeeeeCCCc------------ccccCHHHHHHHHHHHHHHhhhhhc-cCCCceEecccCCCcEEeCCCCceEEecc
Q 043694            9 LYLYLIFDVDPIR------------RFILDWKTCIHIIQGITQGLLYLQE-YSKLIVIHQDLKASNILLDEDLKSKISDF   75 (142)
Q Consensus         9 ~~~~lv~e~~~~~------------~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~~l~~~nil~~~~~~~~l~~f   75 (142)
                      .+.|+++||.+++            ...+++..+..++.+++.++.|+|+ .+   ++|+++++.||+++.++.++++||
T Consensus        82 ~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~---i~H~dl~~~nil~~~~~~~~l~df  158 (269)
T cd08528          82 DRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKR---IVHRDLTPNNIMLGEDDKVTITDF  158 (269)
T ss_pred             CeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCc---eeecCCCHHHEEECCCCcEEEecc
Confidence            3578999997653            2348888999999999999999996 55   899999999999999999999999


Q ss_pred             cceeeeec
Q 043694           76 GLARIFVK   83 (142)
Q Consensus        76 g~~~~~~~   83 (142)
                      |.+.....
T Consensus       159 g~~~~~~~  166 (269)
T cd08528         159 GLAKQKQP  166 (269)
T ss_pred             cceeeccc
Confidence            99876543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.19  E-value=5.9e-11  Score=83.16  Aligned_cols=70  Identities=37%  Similarity=0.587  Sum_probs=61.1

Q ss_pred             hhhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccce
Q 043694            9 LYLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA   78 (142)
Q Consensus         9 ~~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~   78 (142)
                      .+.|+|+||++.+          ...+++..+..++.|++.|+.|+|+.+   ++|+++++.||+++.++.++++|||++
T Consensus        72 ~~~~~v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~  148 (285)
T cd07861          72 SRLYLIFEFLSMDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRR---VLHRDLKPQNLLIDNKGVIKLADFGLA  148 (285)
T ss_pred             CeEEEEEecCCCCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhCC---eeecCCCHHHEEEcCCCcEEECcccce
Confidence            3578899987631          145899999999999999999999998   999999999999999999999999987


Q ss_pred             eee
Q 043694           79 RIF   81 (142)
Q Consensus        79 ~~~   81 (142)
                      ...
T Consensus       149 ~~~  151 (285)
T cd07861         149 RAF  151 (285)
T ss_pred             eec
Confidence            654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.19  E-value=2e-10  Score=80.48  Aligned_cols=70  Identities=29%  Similarity=0.353  Sum_probs=61.4

Q ss_pred             hhhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            9 LYLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      .+.|+++||.+++         ..++++..+..++.|++.|+.|+|+.+   ++|+++++.|++++.++.++++|||++.
T Consensus        75 ~~~~~v~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~~---i~H~dlkp~nili~~~~~~kl~dfg~~~  151 (282)
T cd06643          75 NNLWILIEFCAGGAVDAVMLELERPLTEPQIRVVCKQTLEALNYLHENK---IIHRDLKAGNILFTLDGDIKLADFGVSA  151 (282)
T ss_pred             CEEEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCcccEEEccCCCEEEccccccc
Confidence            3578899997652         356899999999999999999999998   9999999999999999999999999876


Q ss_pred             ee
Q 043694           80 IF   81 (142)
Q Consensus        80 ~~   81 (142)
                      ..
T Consensus       152 ~~  153 (282)
T cd06643         152 KN  153 (282)
T ss_pred             cc
Confidence            54

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.19  E-value=3.4e-11  Score=87.57  Aligned_cols=95  Identities=26%  Similarity=0.412  Sum_probs=78.6

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+|+||||+.++.        +.|.+...+.++.+|+-|+-+||+++   ||.||++..|++++..+.+|+.|||++..-
T Consensus       424 RLyFVMEyvnGGDLMyhiQQ~GkFKEp~AvFYAaEiaigLFFLh~kg---IiYRDLKLDNvmLd~eGHiKi~DFGmcKEn  500 (683)
T KOG0696|consen  424 RLYFVMEYVNGGDLMYHIQQVGKFKEPVAVFYAAEIAIGLFFLHSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCKEN  500 (683)
T ss_pred             heeeEEEEecCchhhhHHHHhcccCCchhhhhhHHHHHHhhhhhcCC---eeeeeccccceEeccCCceEeeeccccccc
Confidence            5899999998765        55888889999999999999999999   999999999999999999999999998765


Q ss_pred             ecCcccccccccccchh--------------hhhhhhcCCcc
Q 043694           82 VKDDLEANTNRIVGTQE--------------SYNLWKDGKGR  109 (142)
Q Consensus        82 ~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~  109 (142)
                      ..+..  ++...+|+|.              +.+.|+-|.+.
T Consensus       501 i~~~~--TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLL  540 (683)
T KOG0696|consen  501 IFDGV--TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLL  540 (683)
T ss_pred             ccCCc--ceeeecCCCcccccceEEecccccchhHHHHHHHH
Confidence            44332  3455788766              56667766544

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.19  E-value=6.2e-11  Score=86.60  Aligned_cols=71  Identities=25%  Similarity=0.383  Sum_probs=63.1

Q ss_pred             hhhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694            9 LYLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus         9 ~~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+.|+|+||++++.       ..+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus       116 ~~~~lv~Ey~~gg~L~~~l~~~~~~~~~~~~~~~qil~aL~~LH~~~---IvHrDLKp~NILl~~~~~~kL~DFG~a~~~  192 (370)
T cd05621         116 KYLYMVMEYMPGGDLVNLMSNYDVPEKWAKFYTAEVVLALDAIHSMG---LIHRDVKPDNMLLDKHGHLKLADFGTCMKM  192 (370)
T ss_pred             CEEEEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHEEECCCCCEEEEecccceec
Confidence            35899999987643       35788899999999999999999998   999999999999999999999999998765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       193 ~  193 (370)
T cd05621         193 D  193 (370)
T ss_pred             c
Confidence            4

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.19  E-value=7.1e-11  Score=81.77  Aligned_cols=69  Identities=26%  Similarity=0.386  Sum_probs=60.9

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+++||.+++.        ..+++..+..++.+++.|+.|||+.+   ++|+++++.||+++.++.++++|||.+...
T Consensus        78 ~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~---i~H~dl~p~nilv~~~~~~~l~dfg~~~~~  154 (263)
T cd06625          78 TLSIFMEYMPGGSVKDQLKAYGALTETVTRKYTRQILEGVEYLHSNM---IVHRDIKGANILRDSAGNVKLGDFGASKRL  154 (263)
T ss_pred             eEEEEEEECCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEeecccceec
Confidence            5788999987632        45788888999999999999999998   999999999999999999999999988654

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.19  E-value=8e-11  Score=81.61  Aligned_cols=69  Identities=16%  Similarity=0.244  Sum_probs=58.0

Q ss_pred             hhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCc--------eEE
Q 043694           10 YLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLK--------SKI   72 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~--------~~l   72 (142)
                      ..++|+||++++.         ..+++..+..++.|++.|+.|+|+.+   ++|+|+++.|++++.+..        .++
T Consensus        73 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---iiH~dlkp~nili~~~~~~~~~~~~~~~l  149 (258)
T cd05078          73 ESIMVQEYVKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLEDKG---LTHGNVCAKNVLLIREEDRKTGNPPFIKL  149 (258)
T ss_pred             CcEEEEecCCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCccceEEEecccccccCCCceEEe
Confidence            5789999987642         34899999999999999999999998   999999999999976543        588


Q ss_pred             ecccceeee
Q 043694           73 SDFGLARIF   81 (142)
Q Consensus        73 ~~fg~~~~~   81 (142)
                      ++||.+...
T Consensus       150 ~d~g~~~~~  158 (258)
T cd05078         150 SDPGISITV  158 (258)
T ss_pred             ccccccccc
Confidence            999877543

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.19  E-value=5.9e-11  Score=83.06  Aligned_cols=71  Identities=34%  Similarity=0.442  Sum_probs=62.4

Q ss_pred             hhhheeeeeCCCc-------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694            9 LYLYLIFDVDPIR-------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus         9 ~~~~lv~e~~~~~-------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+.|+|+||++++       ...+++..+..++.+++.++.++|+.+   ++|+++++.|++++.++.+++.|||++..+
T Consensus        75 ~~~~lv~e~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~  151 (277)
T cd06641          75 TKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEK---KIHRDIKAANVLLSEHGEVKLADFGVAGQL  151 (277)
T ss_pred             CeEEEEEEeCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHccCC---eecCCCCHHhEEECCCCCEEEeecccceec
Confidence            3578999998763       355899999999999999999999988   999999999999999999999999987655


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       152 ~  152 (277)
T cd06641         152 T  152 (277)
T ss_pred             c
Confidence            4

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.19  E-value=4.2e-11  Score=83.96  Aligned_cols=70  Identities=23%  Similarity=0.341  Sum_probs=61.9

Q ss_pred             hhheeeeeCCCcc----cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIRR----FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~~----~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      +.++++||++++.    ..+++..+..++.+++.|+.|+|+.+   ++|+|+++.|++++.++.++++|||++..+.
T Consensus        73 ~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~  146 (279)
T cd06619          73 RISICTEFMDGGSLDVYRKIPEHVLGRIAVAVVKGLTYLWSLK---ILHRDVKPSNMLVNTRGQVKLCDFGVSTQLV  146 (279)
T ss_pred             EEEEEEecCCCCChHHhhcCCHHHHHHHHHHHHHHHHHHHHCC---EeeCCCCHHHEEECCCCCEEEeeCCcceecc
Confidence            4788999988753    34788889999999999999999998   9999999999999999999999999887543

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.18  E-value=4.4e-11  Score=87.03  Aligned_cols=69  Identities=30%  Similarity=0.421  Sum_probs=62.4

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ++|+|+||++++        ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++..+
T Consensus        75 ~~~lv~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~g---ivHrDlKp~NILi~~~~~vkL~DFGla~~~  151 (363)
T cd05628          75 NLYLIMEFLPGGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIHQLG---FIHRDIKPDNLLLDSKGHVKLSDFGLCTGL  151 (363)
T ss_pred             eEEEEEcCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eEecCCCHHHeEECCCCCEEEeeccCcccc
Confidence            578999998764        356899999999999999999999998   999999999999999999999999988654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.18  E-value=9.1e-11  Score=84.60  Aligned_cols=69  Identities=33%  Similarity=0.505  Sum_probs=59.6

Q ss_pred             hheeeeeCCC------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           11 LYLIFDVDPI------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        11 ~~lv~e~~~~------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .|+++++...      ....+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++....
T Consensus        95 ~~~~~~~~~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~  169 (343)
T cd07878          95 VYLVTNLMGADLNNIVKCQKLSDEHVQFLIYQLLRGLKYIHSAG---IIHRDLKPSNVAVNEDCELRILDFGLARQAD  169 (343)
T ss_pred             EEEEeecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eecccCChhhEEECCCCCEEEcCCccceecC
Confidence            4677777533      1245899999999999999999999998   9999999999999999999999999987654

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.18  E-value=5.6e-11  Score=82.31  Aligned_cols=69  Identities=29%  Similarity=0.390  Sum_probs=59.1

Q ss_pred             hhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|++++|..++.         ..+++..+..++.+++.|+.|+|+.+   ++|+|+++.|++++.++.++++|||++..
T Consensus        71 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlk~~nili~~~~~~kl~dfg~~~~  147 (262)
T cd05058          71 SPLVVLPYMKHGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLASKK---FVHRDLAARNCMLDESFTVKVADFGLARD  147 (262)
T ss_pred             CcEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccccCcceEEEcCCCcEEECCcccccc
Confidence            4678888876532         34678888889999999999999988   99999999999999999999999998865


Q ss_pred             e
Q 043694           81 F   81 (142)
Q Consensus        81 ~   81 (142)
                      .
T Consensus       148 ~  148 (262)
T cd05058         148 I  148 (262)
T ss_pred             c
Confidence            4

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.18  E-value=7e-11  Score=84.00  Aligned_cols=69  Identities=33%  Similarity=0.488  Sum_probs=60.3

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+++||+++.        ...+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        78 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~---ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~  154 (309)
T cd07872          78 SLTLVFEYLDKDLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRRK---VLHRDLKPQNLLINERGELKLADFGLARAK  154 (309)
T ss_pred             eEEEEEeCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEECccccceec
Confidence            578899997641        234788899999999999999999998   999999999999999999999999988654

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.17  E-value=1.4e-10  Score=82.07  Aligned_cols=70  Identities=27%  Similarity=0.384  Sum_probs=61.8

Q ss_pred             hhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      +.|+|+||.+++.       ..+++.++..++.+++.++.|+|+.+   ++|+|+++.|++++.++..++.|||.+....
T Consensus        90 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~---i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~  166 (297)
T cd06656          90 ELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALDFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQIT  166 (297)
T ss_pred             EEEEeecccCCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEECcCccceEcc
Confidence            5789999987642       45888999999999999999999988   9999999999999999999999999876543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.17  E-value=9.4e-11  Score=81.46  Aligned_cols=71  Identities=25%  Similarity=0.350  Sum_probs=62.6

Q ss_pred             hhhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.|+++||++++        ...+++.++..++.+++.|+.|+|+.+   ++|+++++.|++++.++..+++|||.+..
T Consensus        79 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~nili~~~~~~~l~dfg~~~~  155 (267)
T cd06645          79 DKLWICMEFCGGGSLQDIYHVTGPLSESQIAYVSRETLQGLYYLHSKG---KMHRDIKGANILLTDNGHVKLADFGVSAQ  155 (267)
T ss_pred             CEEEEEEeccCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEECcceeeeE
Confidence            3578999998763        345899999999999999999999998   99999999999999999999999998765


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       156 ~~  157 (267)
T cd06645         156 IT  157 (267)
T ss_pred             cc
Confidence            43

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.17  E-value=7.9e-11  Score=81.64  Aligned_cols=70  Identities=31%  Similarity=0.517  Sum_probs=60.9

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ..|+++||.+++.          ..+++.++..++.+++.|+.|+|+.+   ++|+++++.|++++.++.++++|||.+.
T Consensus        74 ~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~---i~H~dl~p~ni~i~~~~~~~l~d~~~~~  150 (260)
T cd05073          74 PIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN---YIHRDLRAANILVSASLVCKIADFGLAR  150 (260)
T ss_pred             CeEEEEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhCC---ccccccCcceEEEcCCCcEEECCCccee
Confidence            4688999976532          34788899999999999999999988   9999999999999999999999999886


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      ...
T Consensus       151 ~~~  153 (260)
T cd05073         151 VIE  153 (260)
T ss_pred             ecc
Confidence            554

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.17  E-value=1.5e-10  Score=81.20  Aligned_cols=70  Identities=26%  Similarity=0.348  Sum_probs=61.2

Q ss_pred             hhheeeeeCCCcc------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccc
Q 043694           10 YLYLIFDVDPIRR------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      +.|+++||++++.            ..+++..+..++.+++.|+.|+|+.+   ++|+++++.|++++.++.+++.|||.
T Consensus        94 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~nili~~~~~~kl~dfg~  170 (286)
T cd06638          94 QLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNK---TIHRDVKGNNILLTTEGGVKLVDFGV  170 (286)
T ss_pred             eEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCC---ccccCCCHHhEEECCCCCEEEccCCc
Confidence            4789999986532            34788888999999999999999988   99999999999999999999999998


Q ss_pred             eeeee
Q 043694           78 ARIFV   82 (142)
Q Consensus        78 ~~~~~   82 (142)
                      +..+.
T Consensus       171 ~~~~~  175 (286)
T cd06638         171 SAQLT  175 (286)
T ss_pred             eeecc
Confidence            87654

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.17  E-value=6e-11  Score=85.71  Aligned_cols=69  Identities=26%  Similarity=0.310  Sum_probs=63.0

Q ss_pred             hhhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccce
Q 043694            9 LYLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA   78 (142)
Q Consensus         9 ~~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~   78 (142)
                      .|+|++||||+++.          ..|++..+..++.+++.|+.|||..+   |+.|||+|.||++..++.+.++||-++
T Consensus       150 ~~~cl~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHmlG---ivYRDLKPENILvredGHIMLsDFDLS  226 (459)
T KOG0610|consen  150 KYSCLVMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHMLG---IVYRDLKPENILVREDGHIMLSDFDLS  226 (459)
T ss_pred             ceeEEEEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhhc---eeeccCCcceeEEecCCcEEeeecccc
Confidence            58999999999864          55999999999999999999999999   999999999999999999999999765


Q ss_pred             ee
Q 043694           79 RI   80 (142)
Q Consensus        79 ~~   80 (142)
                      ..
T Consensus       227 ~~  228 (459)
T KOG0610|consen  227 LR  228 (459)
T ss_pred             cc
Confidence            43

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.17  E-value=2.4e-10  Score=79.38  Aligned_cols=70  Identities=19%  Similarity=0.365  Sum_probs=60.9

Q ss_pred             hhheeeeeCCCcc------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccc
Q 043694           10 YLYLIFDVDPIRR------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      +.|+++||.+++.            ..++...+..++.+++.|+.|+|+.+   ++|+|+++.|++++.++.+++.|||.
T Consensus        76 ~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dl~~~nil~~~~~~~~l~d~g~  152 (267)
T cd08228          76 ELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRR---VMHRDIKPANVFITATGVVKLGDLGL  152 (267)
T ss_pred             eEEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCC---eeCCCCCHHHEEEcCCCCEEECcccc
Confidence            5788899877532            34788899999999999999999998   99999999999999999999999998


Q ss_pred             eeeee
Q 043694           78 ARIFV   82 (142)
Q Consensus        78 ~~~~~   82 (142)
                      +....
T Consensus       153 ~~~~~  157 (267)
T cd08228         153 GRFFS  157 (267)
T ss_pred             ceecc
Confidence            77654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.17  E-value=6.7e-11  Score=81.88  Aligned_cols=69  Identities=30%  Similarity=0.409  Sum_probs=61.4

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+++||++++.        ..+++..+..++.|++.|+.|+|+.+   ++|+++++.||+++.++..+++|||++...
T Consensus        71 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  147 (260)
T cd05611          71 YLYLVMEYLNGGDCASLIKTLGGLPEDWAKQYIAEVVLGVEDLHQRG---IIHRDIKPENLLIDQTGHLKLTDFGLSRNG  147 (260)
T ss_pred             eEEEEEeccCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEECCCCcEEEeecccceec
Confidence            4789999987642        45899999999999999999999998   999999999999999999999999987654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.17  E-value=2.1e-10  Score=80.81  Aligned_cols=70  Identities=30%  Similarity=0.386  Sum_probs=61.6

Q ss_pred             hhhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            9 LYLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      .+.|+|+||.+++         ...+++..+..++.|++.++.|+|+.+   ++|+|+++.|++++.++..+++|||.+.
T Consensus        82 ~~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~kl~dfg~~~  158 (292)
T cd06644          82 GKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSMK---IIHRDLKAGNVLLTLDGDIKLADFGVSA  158 (292)
T ss_pred             CeEEEEEecCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCC---eeecCCCcceEEEcCCCCEEEccCccce
Confidence            3578999998764         245899999999999999999999998   9999999999999999999999999876


Q ss_pred             ee
Q 043694           80 IF   81 (142)
Q Consensus        80 ~~   81 (142)
                      ..
T Consensus       159 ~~  160 (292)
T cd06644         159 KN  160 (292)
T ss_pred             ec
Confidence            43

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.17  E-value=1.3e-10  Score=81.18  Aligned_cols=70  Identities=30%  Similarity=0.427  Sum_probs=62.0

Q ss_pred             hhheeeeeCCCc-------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIR-------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~-------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      +.|+++||.+++       ...+++.....++.+++.++.|+|+.+   ++|+++++.|++++.++.++++|||.+..+.
T Consensus        76 ~~~lv~e~~~~~~L~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~---i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~  152 (277)
T cd06917          76 RLWIIMEYAEGGSVRTLMKAGPIAEKYISVIIREVLVALKYIHKVG---VIHRDIKAANILVTNTGNVKLCDFGVAALLN  152 (277)
T ss_pred             EEEEEEecCCCCcHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCcCHHHEEEcCCCCEEEccCCceeecC
Confidence            467899988664       246899999999999999999999998   9999999999999999999999999887654

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.17  E-value=6.1e-11  Score=83.18  Aligned_cols=69  Identities=33%  Similarity=0.347  Sum_probs=61.4

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+|+||+.++        ...+++..+..++.|++.|+.|+|+.+   ++|+|+++.|++++.++.++++|||.+..+
T Consensus        71 ~~~~v~e~~~g~~L~~~l~~~~~l~~~~~~~~~~ql~~~l~~lH~~~---i~H~di~p~nili~~~~~~kl~dfg~~~~~  147 (278)
T cd05606          71 KLSFILDLMNGGDLHYHLSQHGVFSEAEMRFYAAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDF  147 (278)
T ss_pred             EEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---EEcCCCCHHHEEECCCCCEEEccCcCcccc
Confidence            478899998764        245899999999999999999999988   999999999999999999999999987654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.17  E-value=7e-11  Score=83.26  Aligned_cols=69  Identities=29%  Similarity=0.481  Sum_probs=60.5

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||+++.        ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        77 ~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~  153 (288)
T cd07871          77 CLTLVFEYLDSDLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCHKRK---ILHRDLKPQNLLINEKGELKLADFGLARAK  153 (288)
T ss_pred             eEEEEEeCCCcCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEECCCCCEEECcCcceeec
Confidence            478999987641        234788899999999999999999998   999999999999999999999999988754

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.16  E-value=5.4e-11  Score=95.72  Aligned_cols=129  Identities=19%  Similarity=0.268  Sum_probs=88.7

Q ss_pred             hheeeeeCCCcccc--------cCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           11 LYLIFDVDPIRRFI--------LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        11 ~~lv~e~~~~~~~~--------l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      +|+.||||+++...        ..+.-..-+..|++.|+.|||+.+   |+|||+++.||+++.++.+|..|||.+..+.
T Consensus      1309 v~IFMEyC~~GsLa~ll~~gri~dE~vt~vyt~qll~gla~LH~~g---IVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~ 1385 (1509)
T KOG4645|consen 1309 VYIFMEYCEGGSLASLLEHGRIEDEMVTRVYTKQLLEGLAYLHEHG---IVHRDIKPANILLDFNGLIKYGDFGSAVKIK 1385 (1509)
T ss_pred             HHHHHHHhccCcHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHhcC---ceecCCCccceeeecCCcEEeecccceeEec
Confidence            78889999986522        444444456789999999999999   9999999999999999999999999998765


Q ss_pred             cCcccc--cccccccc-----------------hhhhhhhhcCC-cceeecC-------------------CCCCCCCHH
Q 043694           83 KDDLEA--NTNRIVGT-----------------QESYNLWKDGK-GRKLMDP-------------------SLDDTHSSW  123 (142)
Q Consensus        83 ~~~~~~--~~~~~~g~-----------------~~~~~~~~~~~-~~~~~d~-------------------~~~~~~~~~  123 (142)
                      ......  ..+..+||                 .++.+.|+.|- ..+++.-                   +=.+..+..
T Consensus      1386 ~~~~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dne~aIMy~V~~gh~Pq~P~~ 1465 (1509)
T KOG4645|consen 1386 NNAQTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDNEWAIMYHVAAGHKPQIPER 1465 (1509)
T ss_pred             CchhcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccchhHHHhHHhccCCCCCchh
Confidence            432110  01122333                 33888898874 2333331                   112334444


Q ss_pred             HHHHHHHHHHhccCccCCC
Q 043694          124 KLLTCLQIALLCVQENSND  142 (142)
Q Consensus       124 ~~~~~~~i~~~C~~~~p~~  142 (142)
                      ....--.....|+++||+.
T Consensus      1466 ls~~g~dFle~Cl~~dP~~ 1484 (1509)
T KOG4645|consen 1466 LSSEGRDFLEHCLEQDPKM 1484 (1509)
T ss_pred             hhHhHHHHHHHHHhcCchh
Confidence            4445566678899999963

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.16  E-value=6.9e-11  Score=86.52  Aligned_cols=102  Identities=27%  Similarity=0.445  Sum_probs=79.9

Q ss_pred             hhheeeeeCCCcc------cc-cCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC----CceEEecccce
Q 043694           10 YLYLIFDVDPIRR------FI-LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED----LKSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~~------~~-l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~----~~~~l~~fg~~   78 (142)
                      +.|+|+|++.++.      .. +++.....++.+++.++.|+|+.+   ++|+|+++.|+++...    +.++++|||++
T Consensus       110 ~~~lvmEL~~GGeLfd~i~~~~~sE~da~~~~~~il~av~~lH~~g---vvHrDlKpEN~L~~~~~~~~~~ik~~DFGla  186 (382)
T KOG0032|consen  110 SVYLVMELCEGGELFDRIVKKHYSERDAAGIIRQILEAVKYLHSLG---VVHRDLKPENLLLASKDEGSGRIKLIDFGLA  186 (382)
T ss_pred             eEEEEEEecCCchHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCC---ceeccCCHHHeeeccccCCCCcEEEeeCCCc
Confidence            5799999988754      22 899999999999999999999998   9999999999999643    47999999999


Q ss_pred             eeeecCcccccccccccchh--------------hhhhhhcCCcceeecCCCC
Q 043694           79 RIFVKDDLEANTNRIVGTQE--------------SYNLWKDGKGRKLMDPSLD  117 (142)
Q Consensus        79 ~~~~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~~~~d~~~~  117 (142)
                      .....+.   .....+|+++              ..+.|+.|.+..++-.+..
T Consensus       187 ~~~~~~~---~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~  236 (382)
T KOG0032|consen  187 KFIKPGE---RLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVP  236 (382)
T ss_pred             eEccCCc---eEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCC
Confidence            9877622   2334667666              5677777766666654443

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.16  E-value=3.9e-11  Score=83.87  Aligned_cols=69  Identities=23%  Similarity=0.391  Sum_probs=60.5

Q ss_pred             hheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC---CCceEEecccc
Q 043694           11 LYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE---DLKSKISDFGL   77 (142)
Q Consensus        11 ~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~---~~~~~l~~fg~   77 (142)
                      +.+|||.++++          ...|++++...++.+|..|++|||+..   |.|||+++.|++...   |...|++|||+
T Consensus       134 LLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~n---IAHRDlKpENLLyt~t~~na~lKLtDfGF  210 (400)
T KOG0604|consen  134 LLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSMN---IAHRDLKPENLLYTTTSPNAPLKLTDFGF  210 (400)
T ss_pred             eEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhcc---hhhccCChhheeeecCCCCcceEeccccc
Confidence            67889988774          355999999999999999999999999   999999999999864   56799999999


Q ss_pred             eeeee
Q 043694           78 ARIFV   82 (142)
Q Consensus        78 ~~~~~   82 (142)
                      ++.-.
T Consensus       211 AK~t~  215 (400)
T KOG0604|consen  211 AKETQ  215 (400)
T ss_pred             ccccC
Confidence            87644

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.16  E-value=1e-10  Score=82.35  Aligned_cols=68  Identities=34%  Similarity=0.475  Sum_probs=60.1

Q ss_pred             hheeeeeCCCc------------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC-CCceEEecccc
Q 043694           11 LYLIFDVDPIR------------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE-DLKSKISDFGL   77 (142)
Q Consensus        11 ~~lv~e~~~~~------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~-~~~~~l~~fg~   77 (142)
                      .|+++||+++.            ...+++..+..++.|++.|+.|||+.+   ++|+++++.||+++. ++.+++.|||+
T Consensus        81 ~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~---i~H~dl~~~nil~~~~~~~~kl~dfg~  157 (295)
T cd07837          81 LYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHG---VMHRDLKPQNLLVDKQKGLLKIADLGL  157 (295)
T ss_pred             EEEEeeccCcCHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCChHHEEEecCCCeEEEeeccc
Confidence            68999997752            235799999999999999999999998   999999999999998 88999999998


Q ss_pred             eeee
Q 043694           78 ARIF   81 (142)
Q Consensus        78 ~~~~   81 (142)
                      +..+
T Consensus       158 ~~~~  161 (295)
T cd07837         158 GRAF  161 (295)
T ss_pred             ceec
Confidence            8754

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.16  E-value=9.1e-11  Score=82.19  Aligned_cols=70  Identities=30%  Similarity=0.407  Sum_probs=60.7

Q ss_pred             hhhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccce
Q 043694            9 LYLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA   78 (142)
Q Consensus         9 ~~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~   78 (142)
                      .+.|+++||++++          ...+++..+..++.|++.|+.|+|+.+   ++|+++++.|++++.++..++.|||.+
T Consensus        92 ~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~---ivH~dl~~~nili~~~~~~~l~dfg~~  168 (282)
T cd06636          92 DQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHK---VIHRDIKGQNVLLTENAEVKLVDFGVS  168 (282)
T ss_pred             CEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEeeCcch
Confidence            4678999998653          234788888899999999999999998   999999999999999999999999987


Q ss_pred             eee
Q 043694           79 RIF   81 (142)
Q Consensus        79 ~~~   81 (142)
                      ...
T Consensus       169 ~~~  171 (282)
T cd06636         169 AQL  171 (282)
T ss_pred             hhh
Confidence            643

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.16  E-value=1.1e-10  Score=80.71  Aligned_cols=72  Identities=35%  Similarity=0.464  Sum_probs=62.1

Q ss_pred             hhhheeeeeCCCc---------c-cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccce
Q 043694            9 LYLYLIFDVDPIR---------R-FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA   78 (142)
Q Consensus         9 ~~~~lv~e~~~~~---------~-~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~   78 (142)
                      .+.++++||++++         . ..+++..+..++.|++.|+.|+|+.+   ++|+++++.|++++.++.++++|||.+
T Consensus        68 ~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~---i~H~di~p~nil~~~~~~~kl~dfg~~  144 (257)
T cd05040          68 HPLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKR---FIHRDLAARNILLASDDKVKIGDFGLM  144 (257)
T ss_pred             CeEEEEEEecCCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhCC---ccccccCcccEEEecCCEEEecccccc
Confidence            4568889987642         1 35899999999999999999999998   999999999999999999999999988


Q ss_pred             eeeec
Q 043694           79 RIFVK   83 (142)
Q Consensus        79 ~~~~~   83 (142)
                      ..+..
T Consensus       145 ~~~~~  149 (257)
T cd05040         145 RALPQ  149 (257)
T ss_pred             ccccc
Confidence            76543

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.16  E-value=1.1e-10  Score=87.63  Aligned_cols=70  Identities=20%  Similarity=0.287  Sum_probs=60.1

Q ss_pred             hhheeeeeCCC--------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPI--------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+++++..+        ....+++.++..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++..+
T Consensus       234 ~~~lv~e~~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH~~g---IvHrDLKP~NILl~~~~~vkL~DFGla~~~  310 (461)
T PHA03211        234 LTCLVLPKYRSDLYTYLGARLRPLGLAQVTAVARQLLSAIDYIHGEG---IIHRDIKTENVLVNGPEDICLGDFGAACFA  310 (461)
T ss_pred             EEEEEEEccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---EEECcCCHHHEEECCCCCEEEcccCCceec
Confidence            45677776543        2346999999999999999999999998   999999999999999999999999998765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       311 ~  311 (461)
T PHA03211        311 R  311 (461)
T ss_pred             c
Confidence            4

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.16  E-value=1.7e-10  Score=80.77  Aligned_cols=71  Identities=28%  Similarity=0.354  Sum_probs=62.4

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+++||++++        ...+++..+..++.+++.++.|+|+.+   ++|+++++.|++++.++.++++|||.+...
T Consensus        74 ~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~ql~~~l~~LH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  150 (286)
T cd07847          74 KLHLVFEYCDHTVLNELEKNPRGVPEHLIKKIIWQTLQAVNFCHKHN---CIHRDVKPENILITKQGQIKLCDFGFARIL  150 (286)
T ss_pred             EEEEEEeccCccHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCChhhEEEcCCCcEEECccccceec
Confidence            478899997753        235899999999999999999999988   999999999999999999999999988765


Q ss_pred             ec
Q 043694           82 VK   83 (142)
Q Consensus        82 ~~   83 (142)
                      ..
T Consensus       151 ~~  152 (286)
T cd07847         151 TG  152 (286)
T ss_pred             CC
Confidence            43

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.15  E-value=7.1e-11  Score=82.40  Aligned_cols=69  Identities=23%  Similarity=0.286  Sum_probs=60.2

Q ss_pred             hhhheeeeeCCCcc--------c---------ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceE
Q 043694            9 LYLYLIFDVDPIRR--------F---------ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSK   71 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~---------~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~   71 (142)
                      .+.|+++||++.+.        .         .+++..+..++.+++.++.|||+.+   ++|+|+++.|++++.++..+
T Consensus        81 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~---i~H~dlkp~Nili~~~~~~~  157 (275)
T cd05046          81 EPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNAR---FVHRDLAARNCLVSSQREVK  157 (275)
T ss_pred             CcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcC---cccCcCccceEEEeCCCcEE
Confidence            35788999976421        1         5899999999999999999999998   99999999999999999999


Q ss_pred             Eecccceee
Q 043694           72 ISDFGLARI   80 (142)
Q Consensus        72 l~~fg~~~~   80 (142)
                      +++||.+..
T Consensus       158 l~~~~~~~~  166 (275)
T cd05046         158 VSLLSLSKD  166 (275)
T ss_pred             Ecccccccc
Confidence            999988654

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.15  E-value=1.5e-10  Score=81.72  Aligned_cols=72  Identities=31%  Similarity=0.450  Sum_probs=62.2

Q ss_pred             hhhheeeeeCCC-------c-ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPI-------R-RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~-------~-~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.|+|+||..+       . ...+++..+..++.|++.|+.|+|+.+   ++|+++++.||+++.++..++.|||++..
T Consensus        75 ~~~~lv~e~~~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---i~H~dl~p~nill~~~~~~~l~dfg~~~~  151 (298)
T cd07841          75 SNINLVFEFMETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNW---ILHRDLKPNNLLIASDGVLKLADFGLARS  151 (298)
T ss_pred             CEEEEEEcccCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecCCChhhEEEcCCCCEEEccceeeee
Confidence            357899999732       1 126999999999999999999999998   99999999999999999999999998876


Q ss_pred             eec
Q 043694           81 FVK   83 (142)
Q Consensus        81 ~~~   83 (142)
                      ...
T Consensus       152 ~~~  154 (298)
T cd07841         152 FGS  154 (298)
T ss_pred             ccC
Confidence            543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.15  E-value=7.7e-11  Score=81.83  Aligned_cols=71  Identities=30%  Similarity=0.448  Sum_probs=62.2

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.++++||.+++.        ..+++..+..++.+++.|+.|+|+.+   ++|+++++.|++++.++.++++|||.+..
T Consensus        79 ~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lH~~~---ivH~di~p~nil~~~~~~~~l~dfg~~~~  155 (267)
T cd06628          79 DHLNIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLNYLHNRG---IIHRDIKGANILVDNKGGIKISDFGISKK  155 (267)
T ss_pred             CccEEEEEecCCCCHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhcC---cccccCCHHHEEEcCCCCEEecccCCCcc
Confidence            35788999986642        45889999999999999999999988   99999999999999999999999998776


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      +.
T Consensus       156 ~~  157 (267)
T cd06628         156 LE  157 (267)
T ss_pred             cc
Confidence            54

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.15  E-value=1.3e-10  Score=90.33  Aligned_cols=84  Identities=29%  Similarity=0.379  Sum_probs=72.3

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      .++||||||.+++          ..++|.-+..|+.+++.|+.+||...   ++|+|++..||++..++.+|+.|||++.
T Consensus        95 qLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~nk---viHRDikG~NiLLT~e~~VKLvDFGvSa  171 (953)
T KOG0587|consen   95 QLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNNK---VIHRDIKGQNVLLTENAEVKLVDFGVSA  171 (953)
T ss_pred             eEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcc---eeeecccCceEEEeccCcEEEeeeeeee
Confidence            4899999998864          45999999999999999999999998   9999999999999999999999999999


Q ss_pred             eeecCcccccccccccchh
Q 043694           80 IFVKDDLEANTNRIVGTQE   98 (142)
Q Consensus        80 ~~~~~~~~~~~~~~~g~~~   98 (142)
                      .+......  .+..+|++.
T Consensus       172 QldsT~gr--RnT~iGtP~  188 (953)
T KOG0587|consen  172 QLDSTVGR--RNTFIGTPY  188 (953)
T ss_pred             eeeccccc--ccCcCCCcc
Confidence            88765433  233566655

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.15  E-value=8.9e-11  Score=76.95  Aligned_cols=119  Identities=24%  Similarity=0.349  Sum_probs=83.1

Q ss_pred             hhheeeeeCCC--------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPI--------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+-+|+|||..        -++.++.+....++.|++.|+.|+|+..   +.|+++++.|.++..++..|++|||+++-+
T Consensus        75 kltlvfe~cdqdlkkyfdslng~~d~~~~rsfmlqllrgl~fchshn---vlhrdlkpqnllin~ngelkladfglaraf  151 (292)
T KOG0662|consen   75 KLTLVFEFCDQDLKKYFDSLNGDLDPEIVRSFMLQLLRGLGFCHSHN---VLHRDLKPQNLLINRNGELKLADFGLARAF  151 (292)
T ss_pred             eeEEeHHHhhHHHHHHHHhcCCcCCHHHHHHHHHHHHhhhhhhhhhh---hhhccCCcceEEeccCCcEEecccchhhhc
Confidence            35677777653        2456899999999999999999999999   999999999999999999999999998866


Q ss_pred             ecCccccccc----------ccccchh---hhhhhhcCCcc-eeec---CCCCCCCCHHHHHHHHHH
Q 043694           82 VKDDLEANTN----------RIVGTQE---SYNLWKDGKGR-KLMD---PSLDDTHSSWKLLTCLQI  131 (142)
Q Consensus        82 ~~~~~~~~~~----------~~~g~~~---~~~~~~~~~~~-~~~d---~~~~~~~~~~~~~~~~~i  131 (142)
                      .-...+-+..          ...|..-   .++.|+.|-+. ++.+   |-..|.--.++++++..+
T Consensus       152 gipvrcysaevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~  218 (292)
T KOG0662|consen  152 GIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRL  218 (292)
T ss_pred             CCceEeeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHH
Confidence            5433221111          0111111   78889888644 3333   333344445666666554

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.15  E-value=1e-10  Score=80.99  Aligned_cols=70  Identities=34%  Similarity=0.562  Sum_probs=61.5

Q ss_pred             hhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      +.|+++||..++          ...+++.++..++.+++.++.|+|+.+   ++|+++++.|++++.++..++.|||.+.
T Consensus        74 ~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~---i~H~dl~p~ni~i~~~~~~~l~dfg~~~  150 (260)
T cd05067          74 PIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKN---YIHRDLRAANILVSETLCCKIADFGLAR  150 (260)
T ss_pred             CcEEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCC---eecccccHHhEEEcCCCCEEEccCccee
Confidence            578899987653          235899999999999999999999988   9999999999999999999999999887


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      ...
T Consensus       151 ~~~  153 (260)
T cd05067         151 LIE  153 (260)
T ss_pred             ecC
Confidence            654

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.15  E-value=8e-11  Score=81.30  Aligned_cols=71  Identities=30%  Similarity=0.454  Sum_probs=61.2

Q ss_pred             hhheeeeeCCCc------------ccccCHHHHHHHHHHHHHHhhhhh-----ccCCCceEecccCCCcEEeCCCCceEE
Q 043694           10 YLYLIFDVDPIR------------RFILDWKTCIHIIQGITQGLLYLQ-----EYSKLIVIHQDLKASNILLDEDLKSKI   72 (142)
Q Consensus        10 ~~~lv~e~~~~~------------~~~l~~~~~~~~~~~i~~~l~~lh-----~~~~~~i~h~~l~~~nil~~~~~~~~l   72 (142)
                      ..|+++||++++            ...+++..+..++.+++.|+.|+|     +..   ++|+++++.||+++.++..++
T Consensus        75 ~~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~---i~h~dl~p~nili~~~~~~kl  151 (265)
T cd08217          75 TLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNT---VLHRDLKPANIFLDANNNVKL  151 (265)
T ss_pred             EEEEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCc---ceecCCCHHHEEEecCCCEEE
Confidence            468899987653            356899999999999999999999     666   999999999999999999999


Q ss_pred             ecccceeeeec
Q 043694           73 SDFGLARIFVK   83 (142)
Q Consensus        73 ~~fg~~~~~~~   83 (142)
                      .|||.+.....
T Consensus       152 ~d~g~~~~~~~  162 (265)
T cd08217         152 GDFGLAKILGH  162 (265)
T ss_pred             ecccccccccC
Confidence            99998776543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.14  E-value=1.6e-10  Score=84.51  Aligned_cols=71  Identities=25%  Similarity=0.377  Sum_probs=62.7

Q ss_pred             hhhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694            9 LYLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus         9 ~~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+.|+|+||++++.       ..++...+..++.+++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||++..+
T Consensus       116 ~~~~lv~Ey~~gg~L~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDLkp~NIll~~~~~ikL~DfG~a~~~  192 (371)
T cd05622         116 RYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMG---FIHRDVKPDNMLLDKSGHLKLADFGTCMKM  192 (371)
T ss_pred             CEEEEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCC---EEeCCCCHHHEEECCCCCEEEEeCCceeEc
Confidence            35889999987643       34788888889999999999999998   999999999999999999999999998765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       193 ~  193 (371)
T cd05622         193 N  193 (371)
T ss_pred             C
Confidence            4

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.14  E-value=1.3e-10  Score=83.61  Aligned_cols=70  Identities=39%  Similarity=0.561  Sum_probs=61.0

Q ss_pred             hhheeeeeCCCc------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIR------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ..|+|+||+.+.      ...+++..+..++.+++.|+.|||+.+   ++|+++++.|++++.++.+++.|||.+..+.
T Consensus        83 ~~~lv~e~~~~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---i~H~dl~p~nill~~~~~~kl~d~g~~~~~~  158 (337)
T cd07852          83 DIYLVFEYMETDLHAVIRANILEDVHKRYIMYQLLKALKYIHSGN---VIHRDLKPSNILLNSDCRVKLADFGLARSLS  158 (337)
T ss_pred             eEEEEecccccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCcEEEeeccchhccc
Confidence            468899997641      126889999999999999999999988   9999999999999999999999999887554

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.14  E-value=1.8e-10  Score=79.44  Aligned_cols=72  Identities=29%  Similarity=0.455  Sum_probs=62.9

Q ss_pred             hhhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            9 LYLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      .+.|+++||.+++         ...+++..+..++.+++.|+.|+|+.+   ++|+++++.|++++.++.+++.|||.+.
T Consensus        71 ~~~~l~~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh~~~---i~H~dl~~~ni~~~~~~~~~l~dfg~~~  147 (256)
T cd06612          71 TDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSNK---KIHRDIKAGNILLNEEGQAKLADFGVSG  147 (256)
T ss_pred             CcEEEEEecCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCcceEEECCCCcEEEcccccch
Confidence            3578899997753         356899999999999999999999998   9999999999999999999999999877


Q ss_pred             eeec
Q 043694           80 IFVK   83 (142)
Q Consensus        80 ~~~~   83 (142)
                      ....
T Consensus       148 ~~~~  151 (256)
T cd06612         148 QLTD  151 (256)
T ss_pred             hccc
Confidence            6543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.14  E-value=1.8e-10  Score=81.07  Aligned_cols=69  Identities=30%  Similarity=0.413  Sum_probs=61.0

Q ss_pred             hhheeeeeCCCc------------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccc
Q 043694           10 YLYLIFDVDPIR------------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      ..|+++||.+++            ...+++..+..++.+++.|+.|+|+.+   ++|+++++.|++++.++.+++.|||.
T Consensus        98 ~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~dlkp~nili~~~~~~kl~dfg~  174 (291)
T cd06639          98 QLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNR---IIHRDVKGNNILLTTEGGVKLVDFGV  174 (291)
T ss_pred             eeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHEEEcCCCCEEEeeccc
Confidence            478999998653            245899999999999999999999998   99999999999999999999999998


Q ss_pred             eeee
Q 043694           78 ARIF   81 (142)
Q Consensus        78 ~~~~   81 (142)
                      +...
T Consensus       175 ~~~~  178 (291)
T cd06639         175 SAQL  178 (291)
T ss_pred             chhc
Confidence            7654

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.14  E-value=1.3e-10  Score=80.28  Aligned_cols=70  Identities=31%  Similarity=0.518  Sum_probs=61.2

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.|+++||..++         ...++++.+..++.+++.++.|+|+.+   ++|+++++.|++++.+..+++.|||.+..
T Consensus        73 ~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~---i~h~dl~p~ni~i~~~~~~~l~d~g~~~~  149 (256)
T cd05112          73 PICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSN---VIHRDLAARNCLVGENQVVKVSDFGMTRF  149 (256)
T ss_pred             ceEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCC---ccccccccceEEEcCCCeEEECCCcceee
Confidence            578899987653         245889999999999999999999998   99999999999999999999999998875


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       150 ~~  151 (256)
T cd05112         150 VL  151 (256)
T ss_pred             cc
Confidence            43

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.14  E-value=1.1e-10  Score=85.37  Aligned_cols=69  Identities=29%  Similarity=0.407  Sum_probs=61.7

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.|+|+||++++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++..
T Consensus        74 ~~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~g---ivHrDlkp~NIll~~~~~~kl~DfGla~~  150 (377)
T cd05629          74 QYLYLIMEFLPGGDLMTMLIKYDTFSEDVTRFYMAECVLAIEAVHKLG---FIHRDIKPDNILIDRGGHIKLSDFGLSTG  150 (377)
T ss_pred             CeeEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHEEECCCCCEEEeecccccc
Confidence            35899999987642        45888899999999999999999998   99999999999999999999999998863

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.14  E-value=1.6e-10  Score=84.46  Aligned_cols=70  Identities=26%  Similarity=0.395  Sum_probs=62.2

Q ss_pred             hhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      +.|+|+||++++.       ..++...+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++....
T Consensus       117 ~~~lv~Ey~~gg~L~~~l~~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~  193 (370)
T cd05596         117 YLYMVMEYMPGGDLVNLMSNYDIPEKWARFYTAEVVLALDAIHSMG---FIHRDVKPDNMLLDKSGHLKLADFGTCMKMD  193 (370)
T ss_pred             EEEEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHEEEcCCCCEEEEeccceeecc
Confidence            5889999987642       35788888889999999999999998   9999999999999999999999999987654

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.14  E-value=1.6e-10  Score=91.97  Aligned_cols=69  Identities=25%  Similarity=0.223  Sum_probs=59.4

Q ss_pred             hhheeeeeCCCcc-------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCce
Q 043694           10 YLYLIFDVDPIRR-------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKS   70 (142)
Q Consensus        10 ~~~lv~e~~~~~~-------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~   70 (142)
                      ..|+++||+++++                   ..+++..+..++.+++.|+.|+|+.+   ++|+|+++.||+++.++..
T Consensus        76 ~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~G---IIHRDLKPeNILLd~dg~v  152 (932)
T PRK13184         76 PVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKG---VLHRDLKPDNILLGLFGEV  152 (932)
T ss_pred             EEEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCC---ccccCCchheEEEcCCCCE
Confidence            5788999977642                   12456677889999999999999998   9999999999999999999


Q ss_pred             EEecccceeee
Q 043694           71 KISDFGLARIF   81 (142)
Q Consensus        71 ~l~~fg~~~~~   81 (142)
                      ++.|||++...
T Consensus       153 KLiDFGLAk~i  163 (932)
T PRK13184        153 VILDWGAAIFK  163 (932)
T ss_pred             EEEecCcceec
Confidence            99999998765

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.13  E-value=3.4e-10  Score=78.45  Aligned_cols=72  Identities=29%  Similarity=0.435  Sum_probs=62.6

Q ss_pred             hhhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.|+++||.+++        ...+++..+..++.+++.|+.|+|+.+   ++|+++++.||+++.++.+++.|||.+..
T Consensus        66 ~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lH~~~---~~h~dl~~~nilv~~~~~~~l~df~~~~~  142 (262)
T cd05572          66 KYIYMLMEYCLGGELWTILRDRGLFDEYTARFYIACVVLAFEYLHNRG---IIYRDLKPENLLLDSNGYVKLVDFGFAKK  142 (262)
T ss_pred             CccEEEEecCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCC---cccCCCCHHHEEEcCCCCEEEeeCCcccc
Confidence            3578999997653        245899999999999999999999988   99999999999999999999999998876


Q ss_pred             eec
Q 043694           81 FVK   83 (142)
Q Consensus        81 ~~~   83 (142)
                      ...
T Consensus       143 ~~~  145 (262)
T cd05572         143 LKS  145 (262)
T ss_pred             cCc
Confidence            543

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.13  E-value=1.3e-10  Score=82.28  Aligned_cols=55  Identities=29%  Similarity=0.516  Sum_probs=50.7

Q ss_pred             cCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           25 LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        25 l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .++..+..++.|++.|+.|+|+.+   ++|+|+++.|++++.++..+++|||+++.+.
T Consensus       123 ~~~~~~~~i~~qi~~~l~~lH~~~---iiHrDiKp~Nill~~~~~~~l~DFGla~~~~  177 (294)
T PHA02882        123 KNKKLIKNIMKDMLTTLEYIHEHG---ISHGDIKPENIMVDGNNRGYIIDYGIASHFI  177 (294)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCcEEEEEcCCceeec
Confidence            577888899999999999999998   9999999999999999999999999987764

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.13  E-value=1e-10  Score=82.87  Aligned_cols=70  Identities=26%  Similarity=0.392  Sum_probs=61.9

Q ss_pred             hhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ..|+++||.+++.       ..+++.++..++.+++.++.|||+.+   +.|+|+++.|++++.++..+++|||++....
T Consensus        90 ~~~lv~e~~~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~~---i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~  166 (296)
T cd06655          90 ELFVVMEYLAGGSLTDVVTETCMDEAQIAAVCRECLQALEFLHANQ---VIHRDIKSDNVLLGMDGSVKLTDFGFCAQIT  166 (296)
T ss_pred             eEEEEEEecCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEccCccchhcc
Confidence            4788999987643       35899999999999999999999998   9999999999999999999999999876543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.13  E-value=1.4e-10  Score=81.92  Aligned_cols=70  Identities=26%  Similarity=0.394  Sum_probs=62.0

Q ss_pred             hhhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694            9 LYLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus         9 ~~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+.|+++||++++.       ..+++..+..++.+++.|+.|+|+.+   ++|+|+++.|++++.++..++.|||++...
T Consensus        92 ~~~~lv~e~~~~~~L~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~---ivH~dlkp~Nill~~~~~~kL~dfg~~~~~  168 (292)
T cd06658          92 DELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLSVLRALSYLHNQG---VIHRDIKSDSILLTSDGRIKLSDFGFCAQV  168 (292)
T ss_pred             CeEEEEEeCCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---EeecCCCHHHEEEcCCCCEEEccCcchhhc
Confidence            35799999987642       45889999999999999999999998   999999999999999999999999987654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.13  E-value=1.4e-10  Score=81.11  Aligned_cols=70  Identities=29%  Similarity=0.331  Sum_probs=61.8

Q ss_pred             hhhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            9 LYLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      .+.|+|+||++++         ...+++..+..++.+++.++.|+|+.+   ++|+|+++.|++++.++..++.|||.+.
T Consensus        75 ~~~~lv~e~~~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~---i~h~dl~p~nili~~~~~~~l~d~g~~~  151 (280)
T cd06611          75 NKLWILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSHK---VIHRDLKAGNILLTLDGDVKLADFGVSA  151 (280)
T ss_pred             CeEEEEeeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChhhEEECCCCCEEEccCccch
Confidence            3578999998763         245899999999999999999999998   9999999999999999999999999765


Q ss_pred             ee
Q 043694           80 IF   81 (142)
Q Consensus        80 ~~   81 (142)
                      ..
T Consensus       152 ~~  153 (280)
T cd06611         152 KN  153 (280)
T ss_pred             hh
Confidence            43

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.13  E-value=8e-10  Score=76.99  Aligned_cols=69  Identities=32%  Similarity=0.509  Sum_probs=61.0

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||..++.        ..+++..+..++.+++.++.|+|+.+   ++|+|+++.||+++.++..++.|||.+...
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~~~nil~~~~~~~~l~d~~~~~~~  158 (272)
T cd06629          82 YLSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAYLHSKG---ILHRDLKADNLLVDADGICKISDFGISKKS  158 (272)
T ss_pred             ceEEEEecCCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCC---eeecCCChhhEEEcCCCeEEEeeccccccc
Confidence            4788999986542        46899999999999999999999988   999999999999999999999999987653

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.13  E-value=1.8e-10  Score=82.00  Aligned_cols=69  Identities=30%  Similarity=0.376  Sum_probs=60.6

Q ss_pred             hhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      +.|+++||+.++          ...+++..+..++.+++.|+.|+|+.+   ++|+|+++.|++++.++..++.|||++.
T Consensus        75 ~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~~l~dfg~~~  151 (316)
T cd05574          75 YLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLG---IVYRDLKPENILLHESGHIMLSDFDLSK  151 (316)
T ss_pred             EEEEEEEecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHCC---eeccCCChHHeEEcCCCCEEEeecchhh
Confidence            578999987652          245899999999999999999999998   9999999999999999999999999876


Q ss_pred             ee
Q 043694           80 IF   81 (142)
Q Consensus        80 ~~   81 (142)
                      ..
T Consensus       152 ~~  153 (316)
T cd05574         152 QS  153 (316)
T ss_pred             cc
Confidence            54

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.13  E-value=9.8e-11  Score=86.09  Aligned_cols=71  Identities=28%  Similarity=0.403  Sum_probs=61.3

Q ss_pred             hhheeeeeCCC-------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPI-------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~-------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      +.|++++++..       ....+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++..+++|||++..+.
T Consensus       160 ~~~lv~e~~~~~l~~~l~~~~~l~~~~~~~i~~ql~~aL~~LH~~g---ivHrDlkp~Nill~~~~~~~l~DfG~a~~~~  236 (392)
T PHA03207        160 TVCMVMPKYKCDLFTYVDRSGPLPLEQAITIQRRLLEALAYLHGRG---IIHRDVKTENIFLDEPENAVLGDFGAACKLD  236 (392)
T ss_pred             EEEEEehhcCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEEcCCCCEEEccCccccccC
Confidence            46777877543       2356899999999999999999999998   9999999999999999999999999887654


Q ss_pred             c
Q 043694           83 K   83 (142)
Q Consensus        83 ~   83 (142)
                      .
T Consensus       237 ~  237 (392)
T PHA03207        237 A  237 (392)
T ss_pred             c
Confidence            3

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.13  E-value=3.5e-11  Score=93.41  Aligned_cols=124  Identities=22%  Similarity=0.316  Sum_probs=88.5

Q ss_pred             eeeCCCcccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeeecCccccc-----
Q 043694           15 FDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEAN-----   89 (142)
Q Consensus        15 ~e~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~~~~~~~~-----   89 (142)
                      .+|.......+..+..+.++.||++|+.|||.+.   ++||++.++|+++..-...|+.|||+++.+.....+..     
T Consensus       785 lDyvr~hr~~igsq~lLnw~~QIAkgM~YLe~qr---lVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~ey~~~~gK  861 (1177)
T KOG1025|consen  785 LDYVREHRDNIGSQDLLNWCYQIAKGMKYLEEQR---LVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKEYSAPGGK  861 (1177)
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcc---hhhhhhhhhheeecCCCeEEEEecchhhccCcccccccccccc
Confidence            3444445667899999999999999999999998   99999999999999999999999999988765432211     


Q ss_pred             -----------------ccccccchh--hhhhhhcC----------CcceeecCCCCCCCCHHHHHHHHHHHHhccCccC
Q 043694           90 -----------------TNRIVGTQE--SYNLWKDG----------KGRKLMDPSLDDTHSSWKLLTCLQIALLCVQENS  140 (142)
Q Consensus        90 -----------------~~~~~g~~~--~~~~~~~~----------~~~~~~d~~~~~~~~~~~~~~~~~i~~~C~~~~p  140 (142)
                                       ..+.+.++|  .|+...-|          .+.+.+...-+-..++.+.-++..++++||..|+
T Consensus       862 ~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~eI~dlle~geRLsqPpiCtiDVy~~mvkCwmid~  941 (1177)
T KOG1025|consen  862 VPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAEEIPDLLEKGERLSQPPICTIDVYMVMVKCWMIDA  941 (1177)
T ss_pred             cCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCHHHhhHHHhccccCCCCCCccHHHHHHHHHHhccCc
Confidence                             111222222  33333222          2333333333345677778899999999999987


Q ss_pred             C
Q 043694          141 N  141 (142)
Q Consensus       141 ~  141 (142)
                      .
T Consensus       942 ~  942 (1177)
T KOG1025|consen  942 D  942 (1177)
T ss_pred             c
Confidence            5

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.13  E-value=2.3e-10  Score=80.66  Aligned_cols=72  Identities=26%  Similarity=0.383  Sum_probs=62.8

Q ss_pred             hhhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.|+++||++..        ...+++..+..++.|++.|+.|||+.+   ++|+++++.||+++.++.+++.|||++..
T Consensus        79 ~~~~lv~e~~~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---i~H~dl~p~nili~~~~~~~l~d~g~~~~  155 (293)
T cd07843          79 DKIYMVMEYVEHDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDNW---ILHRDLKTSNLLLNNRGILKICDFGLARE  155 (293)
T ss_pred             CcEEEEehhcCcCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCCHHHEEECCCCcEEEeecCceee
Confidence            5688999987641        235899999999999999999999998   99999999999999999999999998876


Q ss_pred             eec
Q 043694           81 FVK   83 (142)
Q Consensus        81 ~~~   83 (142)
                      ...
T Consensus       156 ~~~  158 (293)
T cd07843         156 YGS  158 (293)
T ss_pred             ccC
Confidence            543

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.13  E-value=2.5e-10  Score=81.54  Aligned_cols=70  Identities=36%  Similarity=0.452  Sum_probs=61.2

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+++||+.+.        ..++++.++..++.+++.|+.|+|+.+   ++|+++++.|++++.++.++++|||.+...
T Consensus        99 ~~~lv~e~~~g~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~---i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~  175 (317)
T cd06635          99 TAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHN---MIHRDIKAGNILLTEPGQVKLADFGSASIA  175 (317)
T ss_pred             eEEEEEeCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCcccEEECCCCCEEEecCCCcccc
Confidence            468999997642        355899999999999999999999998   999999999999999999999999987654


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       176 ~  176 (317)
T cd06635         176 S  176 (317)
T ss_pred             C
Confidence            3

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.12  E-value=2.2e-10  Score=83.05  Aligned_cols=70  Identities=33%  Similarity=0.478  Sum_probs=61.1

Q ss_pred             hhheeeeeCCCc-----ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIR-----RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~-----~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      +.|+|+||+.++     ...++...+..++.|++.|+.|||+.+   ++|+|+++.|++++.++..+++|||.+....
T Consensus        95 ~~~lv~e~~~~~l~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~g---i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~  169 (353)
T cd07850          95 DVYLVMELMDANLCQVIQMDLDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAG  169 (353)
T ss_pred             cEEEEEeccCCCHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEECCCCCEEEccCccceeCC
Confidence            468999998652     123888999999999999999999998   9999999999999999999999999987654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.12  E-value=1.1e-10  Score=87.53  Aligned_cols=98  Identities=27%  Similarity=0.363  Sum_probs=77.8

Q ss_pred             hhheeeeeCCCc-------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIR-------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~-------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .+++|.||+.+.       ...++++++..++.+.++|+.|||+..   ++|+|+++.||+++.++..|+++||+++-..
T Consensus        75 ~~~vVte~a~g~L~~il~~d~~lpEe~v~~~a~~LVsaL~yLhs~r---ilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~  151 (808)
T KOG0597|consen   75 HLWVVTEYAVGDLFTILEQDGKLPEEQVRAIAYDLVSALYYLHSNR---ILHRDMKPQNILLEKGGTLKLCDFGLARAMS  151 (808)
T ss_pred             eEEEEehhhhhhHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhcC---cccccCCcceeeecCCCceeechhhhhhhcc
Confidence            478999998762       356999999999999999999999999   9999999999999999999999999998765


Q ss_pred             cCcccccccccccchh--------------hhhhhhcCCcceee
Q 043694           83 KDDLEANTNRIVGTQE--------------SYNLWKDGKGRKLM  112 (142)
Q Consensus        83 ~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~~~~  112 (142)
                      ...  ....+..|+|.              ..+.|+.|-+.+-.
T Consensus       152 ~~t--~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~  193 (808)
T KOG0597|consen  152 TNT--SVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYEL  193 (808)
T ss_pred             cCc--eeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHH
Confidence            432  12233455544              56777777655433

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.12  E-value=2.5e-10  Score=81.11  Aligned_cols=70  Identities=34%  Similarity=0.428  Sum_probs=61.0

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||+.++        ...+++..+..++.|++.|+.|+|+.+   ++|+++++.||+++.++.++++|||++...
T Consensus        89 ~~~lv~e~~~g~l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH~~~---i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~  165 (307)
T cd06607          89 TAWLVMEYCLGSASDILEVHKKPLQEVEIAAICHGALQGLAYLHSHE---RIHRDIKAGNILLTEPGTVKLADFGSASLV  165 (307)
T ss_pred             eEEEEHHhhCCCHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCcccEEECCCCCEEEeecCcceec
Confidence            467888887642        346899999999999999999999998   999999999999999999999999987654


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       166 ~  166 (307)
T cd06607         166 S  166 (307)
T ss_pred             C
Confidence            3

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.12  E-value=2.2e-10  Score=79.59  Aligned_cols=70  Identities=27%  Similarity=0.360  Sum_probs=61.6

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+|+||.+++        ...+++.++..++.|++.|+.|+|+.+   ++|+|+++.|++++.++..++.|||++...
T Consensus        80 ~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~nill~~~~~~~l~dfg~~~~~  156 (267)
T cd06646          80 KLWICMEYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLAYLHSKG---KMHRDIKGANILLTDNGDVKLADFGVAAKI  156 (267)
T ss_pred             EEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEECCCCCEEECcCccceee
Confidence            468899997753        245889999999999999999999998   999999999999999999999999988765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       157 ~  157 (267)
T cd06646         157 T  157 (267)
T ss_pred             c
Confidence            3

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.12  E-value=1.3e-10  Score=80.67  Aligned_cols=69  Identities=32%  Similarity=0.476  Sum_probs=61.2

Q ss_pred             hhheeeeeCCCc------------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccc
Q 043694           10 YLYLIFDVDPIR------------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      +.|+++||++++            ...+++..+..++.|++.|+.|+|+.+   ++|+++++.|++++.++.+++.|||.
T Consensus        83 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~---i~H~~l~p~ni~~~~~~~~~l~d~~~  159 (275)
T cd06608          83 QLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENK---VIHRDIKGQNILLTKNAEVKLVDFGV  159 (275)
T ss_pred             EEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCC---cccCCCCHHHEEEccCCeEEECCCcc
Confidence            468999998753            246899999999999999999999998   99999999999999999999999998


Q ss_pred             eeee
Q 043694           78 ARIF   81 (142)
Q Consensus        78 ~~~~   81 (142)
                      +...
T Consensus       160 ~~~~  163 (275)
T cd06608         160 SAQL  163 (275)
T ss_pred             ceec
Confidence            7654

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.12  E-value=1.2e-10  Score=83.77  Aligned_cols=70  Identities=33%  Similarity=0.518  Sum_probs=61.7

Q ss_pred             hhheeeeeCCC-------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPI-------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~-------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      +.|+|+||+.+       ....+++..+..++.+++.|+.|||+.+   ++|+++++.||+++.++.++++|||.+....
T Consensus        82 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~  158 (334)
T cd07855          82 DVYVVMDLMESDLHHIIHSDQPLTEEHIRYFLYQLLRGLKYIHSAN---VIHRDLKPSNLLVNEDCELRIGDFGMARGLS  158 (334)
T ss_pred             eEEEEEehhhhhHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCcEEecccccceeec
Confidence            46899998753       2345899999999999999999999998   9999999999999999999999999887654

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.12  E-value=1.9e-10  Score=80.25  Aligned_cols=72  Identities=33%  Similarity=0.441  Sum_probs=63.3

Q ss_pred             hhhheeeeeCCCc-------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694            9 LYLYLIFDVDPIR-------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus         9 ~~~~lv~e~~~~~-------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+.|+++||.+++       ...+++..+..++.|++.++.|+|+.+   ++|+++++.|++++.++..+++|||.+...
T Consensus        72 ~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~---i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~  148 (274)
T cd06609          72 SKLWIIMEYCGGGSCLDLLKPGKLDETYIAFILREVLLGLEYLHEEG---KIHRDIKAANILLSEEGDVKLADFGVSGQL  148 (274)
T ss_pred             CeEEEEEEeeCCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEECCCCCEEEcccccceee
Confidence            3578899987753       236899999999999999999999998   999999999999999999999999988776


Q ss_pred             ec
Q 043694           82 VK   83 (142)
Q Consensus        82 ~~   83 (142)
                      ..
T Consensus       149 ~~  150 (274)
T cd06609         149 TS  150 (274)
T ss_pred             cc
Confidence            53

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.12  E-value=2.8e-10  Score=83.39  Aligned_cols=83  Identities=29%  Similarity=0.271  Sum_probs=69.1

Q ss_pred             hhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      -+++|+..+.++          +.-|++++.+.++.+|+.|+.+||...   |+.||++|.||+++..+.+.|+|+|++.
T Consensus       259 ~LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~---iVYRDLKPeNILLDd~GhvRISDLGLAv  335 (591)
T KOG0986|consen  259 ALCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRR---IVYRDLKPENILLDDHGHVRISDLGLAV  335 (591)
T ss_pred             ceEEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcc---eeeccCChhheeeccCCCeEeeccceEE
Confidence            366776665553          345999999999999999999999999   9999999999999999999999999999


Q ss_pred             eeecCcccccccccccchh
Q 043694           80 IFVKDDLEANTNRIVGTQE   98 (142)
Q Consensus        80 ~~~~~~~~~~~~~~~g~~~   98 (142)
                      .+..+....   ..+||.|
T Consensus       336 ei~~g~~~~---~rvGT~G  351 (591)
T KOG0986|consen  336 EIPEGKPIR---GRVGTVG  351 (591)
T ss_pred             ecCCCCccc---cccCccc
Confidence            887765432   2366666

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.12  E-value=1.2e-10  Score=82.11  Aligned_cols=70  Identities=30%  Similarity=0.404  Sum_probs=62.1

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+++||++++        ...+++..+..++.+++.|+.|+|+.+   ++|+++++.||+++.++.+++.|||++...
T Consensus        75 ~~~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~qil~~l~~lH~~~---i~H~dl~p~nili~~~~~~kl~dfg~~~~~  151 (290)
T cd05580          75 NLYLVMEYVPGGELFSHLRKSGRFPEPVARFYAAQVVLALEYLHSLD---IVYRDLKPENLLLDSDGYIKITDFGFAKRV  151 (290)
T ss_pred             eEEEEEecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHEEECCCCCEEEeeCCCcccc
Confidence            478999998653        355899999999999999999999988   999999999999999999999999988765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       152 ~  152 (290)
T cd05580         152 K  152 (290)
T ss_pred             C
Confidence            4

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.12  E-value=2.3e-10  Score=79.69  Aligned_cols=70  Identities=26%  Similarity=0.535  Sum_probs=61.1

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+++||++.+         ...+++.++..++.+++.|+.|+|+.+   ++|+++++.|++++.++.+++.|||.+..
T Consensus        80 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~---~~H~dl~p~nili~~~~~~~l~d~g~~~~  156 (270)
T cd05056          80 PVWIVMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLESKR---FVHRDIAARNVLVSSPDCVKLGDFGLSRY  156 (270)
T ss_pred             CcEEEEEcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccccChheEEEecCCCeEEccCceeee
Confidence            367899987653         235899999999999999999999988   99999999999999999999999998876


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       157 ~~  158 (270)
T cd05056         157 LE  158 (270)
T ss_pred             cc
Confidence            53

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.12  E-value=2.1e-10  Score=82.47  Aligned_cols=71  Identities=24%  Similarity=0.335  Sum_probs=62.8

Q ss_pred             hhhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            9 LYLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      .+.|+|+||++++         ...+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||++.
T Consensus        74 ~~~~lv~Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH~~~---iiHrDlkp~Nill~~~~~~kl~DfG~a~  150 (331)
T cd05624          74 NYLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQLH---YVHRDIKPDNVLLDMNGHIRLADFGSCL  150 (331)
T ss_pred             CEEEEEEeCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCchHHEEEcCCCCEEEEecccee
Confidence            3578999998764         345889999999999999999999998   9999999999999999999999999987


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      ...
T Consensus       151 ~~~  153 (331)
T cd05624         151 KMN  153 (331)
T ss_pred             ecc
Confidence            654

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.11  E-value=9.4e-11  Score=84.44  Aligned_cols=70  Identities=33%  Similarity=0.579  Sum_probs=61.7

Q ss_pred             hhheeeeeCCC-------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPI-------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~-------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      +.|+++||+.+       ....+++..+..++.|++.|+.|||+.+   ++|+++++.|++++.++.++++|||++....
T Consensus        83 ~~~lv~e~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~  159 (337)
T cd07858          83 DVYIVYELMDTDLHQIIRSSQTLSDDHCQYFLYQLLRGLKYIHSAN---VLHRDLKPSNLLLNANCDLKICDFGLARTTS  159 (337)
T ss_pred             cEEEEEeCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEcCCCCEEECcCccccccC
Confidence            36899999764       2356899999999999999999999998   9999999999999999999999999887653

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.11  E-value=2.8e-10  Score=80.96  Aligned_cols=71  Identities=24%  Similarity=0.315  Sum_probs=61.1

Q ss_pred             hhhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhc-cCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            9 LYLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQE-YSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      .+.|+++||.+++        ...+++..+..++.+++.|+.|+|+ .+   ++|+++++.|++++.++..+++|||.+.
T Consensus        72 ~~~~lv~ey~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~  148 (308)
T cd06615          72 GEISICMEHMDGGSLDQVLKKAGRIPENILGKISIAVLRGLTYLREKHK---IMHRDVKPSNILVNSRGEIKLCDFGVSG  148 (308)
T ss_pred             CEEEEEeeccCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCC---EEECCCChHHEEEecCCcEEEccCCCcc
Confidence            3578999998763        2458889999999999999999997 46   9999999999999999999999999876


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      ...
T Consensus       149 ~~~  151 (308)
T cd06615         149 QLI  151 (308)
T ss_pred             ccc
Confidence            543

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.11  E-value=2.7e-10  Score=79.86  Aligned_cols=69  Identities=32%  Similarity=0.489  Sum_probs=60.6

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.|+++||+.++         ...+++..+..++.+++.|+.|+|+.+   ++|+++++.|++++.++..+++|||++..
T Consensus        73 ~~~~v~e~~~~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~---i~H~~l~p~nill~~~~~~~l~dfg~~~~  149 (284)
T cd07860          73 KLYLVFEFLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARA  149 (284)
T ss_pred             cEEEEeeccccCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEEeeccchhh
Confidence            578899987532         345899999999999999999999998   99999999999999999999999998765


Q ss_pred             e
Q 043694           81 F   81 (142)
Q Consensus        81 ~   81 (142)
                      .
T Consensus       150 ~  150 (284)
T cd07860         150 F  150 (284)
T ss_pred             c
Confidence            4

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.11  E-value=2.1e-10  Score=79.17  Aligned_cols=71  Identities=20%  Similarity=0.368  Sum_probs=61.9

Q ss_pred             hhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      +.++++||++++          ...+++.++..++.+++.++.|+|+.+   ++|+++++.|++++.++..+++|||.+.
T Consensus        73 ~~~~~~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~dl~p~ni~~~~~~~~kl~d~~~~~  149 (256)
T cd08221          73 TLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAG---ILHRDIKTLNIFLTKAGLIKLGDFGISK  149 (256)
T ss_pred             eEEEEEEecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCC---ccccCCChHhEEEeCCCCEEECcCcceE
Confidence            578889998652          245899999999999999999999988   9999999999999999999999999887


Q ss_pred             eeec
Q 043694           80 IFVK   83 (142)
Q Consensus        80 ~~~~   83 (142)
                      ....
T Consensus       150 ~~~~  153 (256)
T cd08221         150 ILGS  153 (256)
T ss_pred             Eccc
Confidence            6543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.11  E-value=1.6e-10  Score=83.97  Aligned_cols=70  Identities=30%  Similarity=0.418  Sum_probs=62.7

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+|+||++++        ...+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||++..+
T Consensus        75 ~~~lv~E~~~~g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~  151 (364)
T cd05599          75 YLYLIMEYLPGGDMMTLLMKKDTFTEEETRFYIAETILAIDSIHKLG---YIHRDIKPDNLLLDAKGHIKLSDFGLCTGL  151 (364)
T ss_pred             eEEEEECCCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCCHHHeEECCCCCEEEeecccceec
Confidence            588999998764        345899999999999999999999998   999999999999999999999999988754


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       152 ~  152 (364)
T cd05599         152 K  152 (364)
T ss_pred             c
Confidence            3

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.10  E-value=3.6e-10  Score=79.33  Aligned_cols=70  Identities=23%  Similarity=0.385  Sum_probs=60.9

Q ss_pred             hhhheeeeeCCCcc-----------cccCHHHHHHHHHHHHHHhhhhhcc-CCCceEecccCCCcEEeCCCCceEEeccc
Q 043694            9 LYLYLIFDVDPIRR-----------FILDWKTCIHIIQGITQGLLYLQEY-SKLIVIHQDLKASNILLDEDLKSKISDFG   76 (142)
Q Consensus         9 ~~~~lv~e~~~~~~-----------~~l~~~~~~~~~~~i~~~l~~lh~~-~~~~i~h~~l~~~nil~~~~~~~~l~~fg   76 (142)
                      .+.|+++||++++.           ..+++..+..++.+++.++.|||+. +   ++|+|+++.|++++.++.++++|||
T Consensus        72 ~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~---i~H~dl~p~nil~~~~~~~~l~dfg  148 (286)
T cd06622          72 GAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHN---IIHRDVKPTNVLVNGNGQVKLCDFG  148 (286)
T ss_pred             CeEEEEEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCC---EeeCCCCHHHEEECCCCCEEEeecC
Confidence            45889999987632           2689999999999999999999974 6   9999999999999999999999999


Q ss_pred             ceeee
Q 043694           77 LARIF   81 (142)
Q Consensus        77 ~~~~~   81 (142)
                      .+..+
T Consensus       149 ~~~~~  153 (286)
T cd06622         149 VSGNL  153 (286)
T ss_pred             Ccccc
Confidence            87654

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.10  E-value=3.3e-10  Score=81.77  Aligned_cols=72  Identities=31%  Similarity=0.439  Sum_probs=63.5

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.|+|+||++++.        ..+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.+++.|||++..
T Consensus        74 ~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~g---iiH~Dlkp~NIll~~~~~~kL~Dfg~~~~  150 (350)
T cd05573          74 EHLYLVMEYMPGGDLMNLLIRKDVFPEETARFYIAELVLALDSVHKLG---FIHRDIKPDNILIDADGHIKLADFGLCKK  150 (350)
T ss_pred             CeEEEEEcCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHeEECCCCCEEeecCCCCcc
Confidence            35789999987642        46899999999999999999999988   99999999999999999999999998876


Q ss_pred             eec
Q 043694           81 FVK   83 (142)
Q Consensus        81 ~~~   83 (142)
                      ...
T Consensus       151 ~~~  153 (350)
T cd05573         151 MNK  153 (350)
T ss_pred             Ccc
Confidence            543

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.10  E-value=1.1e-09  Score=75.61  Aligned_cols=69  Identities=32%  Similarity=0.444  Sum_probs=60.8

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+|+++||.+++         ...++..++..++.+++.|+.|+|+.+   ++|+++++.||+++.++..+++|||.+..
T Consensus        74 ~~~l~~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~---i~h~dl~p~ni~i~~~~~~~l~d~g~~~~  150 (262)
T cd06613          74 KLWIVMEYCGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHETG---KIHRDIKGANILLTEDGDVKLADFGVSAQ  150 (262)
T ss_pred             EEEEEEeCCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCC---ceecCCChhhEEECCCCCEEECccccchh
Confidence            578899987652         256899999999999999999999998   99999999999999999999999998765


Q ss_pred             e
Q 043694           81 F   81 (142)
Q Consensus        81 ~   81 (142)
                      .
T Consensus       151 ~  151 (262)
T cd06613         151 L  151 (262)
T ss_pred             h
Confidence            4

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.10  E-value=2.4e-10  Score=82.00  Aligned_cols=70  Identities=23%  Similarity=0.397  Sum_probs=62.8

Q ss_pred             hhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.|+|+||++++.         ..+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||++..
T Consensus        75 ~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~---i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~  151 (330)
T cd05601          75 NLYLVMEYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQMG---YVHRDIKPENVLIDRTGHIKLADFGSAAR  151 (330)
T ss_pred             eEEEEECCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEcccCchHheEECCCCCEEeccCCCCeE
Confidence            5789999987642         46899999999999999999999998   99999999999999999999999999876


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      +.
T Consensus       152 ~~  153 (330)
T cd05601         152 LT  153 (330)
T ss_pred             CC
Confidence            54

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.10  E-value=2.2e-10  Score=81.39  Aligned_cols=71  Identities=35%  Similarity=0.500  Sum_probs=61.1

Q ss_pred             hhhheeeeeCCCc------------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC----CCceEE
Q 043694            9 LYLYLIFDVDPIR------------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE----DLKSKI   72 (142)
Q Consensus         9 ~~~~lv~e~~~~~------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~----~~~~~l   72 (142)
                      .+.|+|+||++++            ...++...+..++.|++.|+.|+|+.+   ++|+++++.|++++.    ++..++
T Consensus        77 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~h~dlkp~Nil~~~~~~~~~~~kl  153 (316)
T cd07842          77 KSVYLLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNW---VLHRDLKPANILVMGEGPERGVVKI  153 (316)
T ss_pred             ceEEEEEeCCCcCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCC---EeeCCCCHHHEEEcCCCCccceEEE
Confidence            4578999987642            136888899999999999999999998   999999999999998    889999


Q ss_pred             ecccceeeee
Q 043694           73 SDFGLARIFV   82 (142)
Q Consensus        73 ~~fg~~~~~~   82 (142)
                      +|||++....
T Consensus       154 ~Dfg~~~~~~  163 (316)
T cd07842         154 GDLGLARLFN  163 (316)
T ss_pred             CCCccccccC
Confidence            9999877643

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.10  E-value=1.5e-10  Score=83.24  Aligned_cols=70  Identities=34%  Similarity=0.501  Sum_probs=61.6

Q ss_pred             hhheeeeeCCCc------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIR------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      +.|+++||+.+.      ...+++..+..++.|++.|+.|||+.+   ++|+|+++.|++++.++.++++|||++....
T Consensus        82 ~~~lv~e~~~~~l~~~~~~~~l~~~~~~~i~~ql~~aL~~LH~~~---ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~  157 (336)
T cd07849          82 DVYIVQELMETDLYKLIKTQHLSNDHIQYFLYQILRGLKYIHSAN---VLHRDLKPSNLLLNTNCDLKICDFGLARIAD  157 (336)
T ss_pred             eEEEEehhcccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHEEECCCCCEEECcccceeecc
Confidence            368899987652      346899999999999999999999998   9999999999999999999999999887653

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.10  E-value=2.9e-11  Score=83.84  Aligned_cols=118  Identities=23%  Similarity=0.378  Sum_probs=81.1

Q ss_pred             hheeeeeCCC-------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeeec
Q 043694           11 LYLIFDVDPI-------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVK   83 (142)
Q Consensus        11 ~~lv~e~~~~-------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~~   83 (142)
                      +|.+.|.+.+       +...|+...+.-+..||+.|+.|||+.+   |+|||+++.|.+..+|...|+.|||+++....
T Consensus       132 iYV~TELmQSDLHKIIVSPQ~Ls~DHvKVFlYQILRGLKYLHsA~---ILHRDIKPGNLLVNSNCvLKICDFGLARvee~  208 (449)
T KOG0664|consen  132 LYVLTELMQSDLHKIIVSPQALTPDHVKVFVYQILRGLKYLHTAN---ILHRDIKPGNLLVNSNCILKICDFGLARTWDQ  208 (449)
T ss_pred             HHHHHHHHHhhhhheeccCCCCCcchhhhhHHHHHhhhHHHhhcc---hhhccCCCccEEeccCceEEecccccccccch
Confidence            5556665443       4566899999889999999999999999   99999999999999999999999999987544


Q ss_pred             Cccccc-----------ccccccchh---hhhhhhcCCc-ceeecCCCCC--CCCHHHHHHHHHH
Q 043694           84 DDLEAN-----------TNRIVGTQE---SYNLWKDGKG-RKLMDPSLDD--THSSWKLLTCLQI  131 (142)
Q Consensus        84 ~~~~~~-----------~~~~~g~~~---~~~~~~~~~~-~~~~d~~~~~--~~~~~~~~~~~~i  131 (142)
                      ......           ....+|+..   +.+.|+.|-+ .+.+..++.-  ..+..++..+.++
T Consensus       209 d~~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq~PiqQL~lItdL  273 (449)
T KOG0664|consen  209 RDRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAAGPIEQLQMIIDL  273 (449)
T ss_pred             hhhhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhccChHHHHHHHHHH
Confidence            332111           111222211   7888888763 3444444431  2344444444443

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.10  E-value=1.6e-10  Score=79.93  Aligned_cols=71  Identities=34%  Similarity=0.529  Sum_probs=61.9

Q ss_pred             hhhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccce
Q 043694            9 LYLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA   78 (142)
Q Consensus         9 ~~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~   78 (142)
                      .+.|+++||.+++          ...+++.++..++.+++.|+.|+|+.+   ++|+++++.|++++.++..++.|||.+
T Consensus        74 ~~~~~v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~~---i~h~di~p~nili~~~~~~~l~d~g~~  150 (261)
T cd05034          74 EPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRN---YIHRDLAARNILVGENLVCKIADFGLA  150 (261)
T ss_pred             CceEEEEeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCcchheEEEcCCCCEEECccccc
Confidence            3578899987653          235899999999999999999999998   999999999999999999999999987


Q ss_pred             eeee
Q 043694           79 RIFV   82 (142)
Q Consensus        79 ~~~~   82 (142)
                      ....
T Consensus       151 ~~~~  154 (261)
T cd05034         151 RLIE  154 (261)
T ss_pred             eecc
Confidence            7654

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.10  E-value=4.8e-10  Score=79.38  Aligned_cols=70  Identities=31%  Similarity=0.591  Sum_probs=61.1

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+++||+.+.        ...+++.++..++.|++.|+.|||+.+   ++|+++++.|++++.++.++++|||.+...
T Consensus        93 ~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---i~H~dl~p~nil~~~~~~~kl~dfg~~~~~  169 (310)
T cd07865          93 SFYLVFEFCEHDLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHRNK---ILHRDMKAANILITKDGILKLADFGLARAF  169 (310)
T ss_pred             eEEEEEcCCCcCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHEEECCCCcEEECcCCCcccc
Confidence            358999997642        235899999999999999999999998   999999999999999999999999988655


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       170 ~  170 (310)
T cd07865         170 S  170 (310)
T ss_pred             c
Confidence            3

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.10  E-value=1.9e-10  Score=84.23  Aligned_cols=67  Identities=31%  Similarity=0.453  Sum_probs=60.4

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      +.|+|+||++++.        ..+++.....++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||++.
T Consensus        75 ~~~lv~E~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~al~~lH~~~---ivHrDlKp~NILl~~~g~~kL~DFGla~  149 (382)
T cd05625          75 NLYFVMDYIPGGDMMSLLIRMGIFPEDLARFYIAELTCAVESVHKMG---FIHRDIKPDNILIDRDGHIKLTDFGLCT  149 (382)
T ss_pred             EEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEEeECCCCc
Confidence            5799999988642        45788888999999999999999998   9999999999999999999999999864

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.09  E-value=3.2e-10  Score=81.55  Aligned_cols=69  Identities=22%  Similarity=0.303  Sum_probs=61.4

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||++++         ...+++..+..++.|++.|+.|+|+.+   ++|+|+++.|++++.++.+++.|||++..
T Consensus        75 ~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH~~~---iiHrDlkp~Nili~~~~~~kL~DfG~a~~  151 (332)
T cd05623          75 NLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQLH---YVHRDIKPDNILMDMNGHIRLADFGSCLK  151 (332)
T ss_pred             EEEEEEeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHEEECCCCCEEEeecchhee
Confidence            578999998764         245889999999999999999999998   99999999999999999999999998765


Q ss_pred             e
Q 043694           81 F   81 (142)
Q Consensus        81 ~   81 (142)
                      +
T Consensus       152 ~  152 (332)
T cd05623         152 L  152 (332)
T ss_pred             c
Confidence            4

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.09  E-value=3.5e-10  Score=79.06  Aligned_cols=70  Identities=24%  Similarity=0.334  Sum_probs=60.9

Q ss_pred             hhhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.|+++||.+++        ...+++.++..++.+++.|+.|+|+.+   ++|+++++.|++++. +.++++|||.+..
T Consensus        73 ~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~---i~H~dl~p~ni~l~~-~~~kl~dfg~~~~  148 (282)
T cd07831          73 GRLALVFELMDMNLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHRNG---IFHRDIKPENILIKD-DILKLADFGSCRG  148 (282)
T ss_pred             CcEEEEEecCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---ceecccCHHHEEEcC-CCeEEEecccccc
Confidence            3578899987542        245899999999999999999999998   999999999999998 9999999998876


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      +.
T Consensus       149 ~~  150 (282)
T cd07831         149 IY  150 (282)
T ss_pred             cc
Confidence            53

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.09  E-value=1.8e-10  Score=81.07  Aligned_cols=70  Identities=30%  Similarity=0.319  Sum_probs=61.5

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+++||++++        ...+++.++..++.+++.|+.|+|+.+   ++|+++++.||+++.++.++++|||++...
T Consensus        79 ~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~~---i~H~dl~p~nil~~~~~~~kl~dfg~~~~~  155 (290)
T cd05613          79 KLHLILDYINGGELFTHLSQRERFKEQEVQIYSGEIVLALEHLHKLG---IIYRDIKLENILLDSNGHVVLTDFGLSKEF  155 (290)
T ss_pred             eEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHeEECCCCCEEEeeCccceec
Confidence            468999998764        244888899889999999999999988   999999999999999999999999988765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       156 ~  156 (290)
T cd05613         156 H  156 (290)
T ss_pred             c
Confidence            3

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.09  E-value=2.3e-10  Score=81.04  Aligned_cols=70  Identities=29%  Similarity=0.430  Sum_probs=61.7

Q ss_pred             hhhheeeeeCCCc-------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694            9 LYLYLIFDVDPIR-------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus         9 ~~~~lv~e~~~~~-------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ...|+++||++++       ...+++.++..++.+++.|+.|+|+.+   ++|+|+++.|++++.++..+++|||++...
T Consensus        91 ~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~---ivH~dl~p~Nill~~~~~~kL~dfg~~~~~  167 (297)
T cd06659          91 EELWVLMEFLQGGALTDIVSQTRLNEEQIATVCESVLQALCYLHSQG---VIHRDIKSDSILLTLDGRVKLSDFGFCAQI  167 (297)
T ss_pred             CeEEEEEecCCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHeEEccCCcEEEeechhHhhc
Confidence            3578999998763       245899999999999999999999998   999999999999999999999999987644

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.09  E-value=3.6e-10  Score=79.52  Aligned_cols=70  Identities=31%  Similarity=0.411  Sum_probs=61.0

Q ss_pred             hhhheeeeeCCC--------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPI--------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.|+|+||+.+        ....+++.....++.+++.|+.|+|+.+   ++|+++++.|++++.++.++++|||.+..
T Consensus        76 ~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~---i~H~dl~p~nil~~~~~~~kl~dfg~~~~  152 (291)
T cd07844          76 KTLTLVFEYLDTDLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQRR---VLHRDLKPQNLLISERGELKLADFGLARA  152 (291)
T ss_pred             CeEEEEEecCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eecccCCHHHEEEcCCCCEEECccccccc
Confidence            357899999764        1235789999999999999999999998   99999999999999999999999998764


Q ss_pred             e
Q 043694           81 F   81 (142)
Q Consensus        81 ~   81 (142)
                      .
T Consensus       153 ~  153 (291)
T cd07844         153 K  153 (291)
T ss_pred             c
Confidence            3

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.09  E-value=2.9e-10  Score=79.33  Aligned_cols=70  Identities=27%  Similarity=0.331  Sum_probs=61.9

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC-ceEEecccceee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL-KSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~-~~~l~~fg~~~~   80 (142)
                      +.|+|+||++++        ...+++.++..++.|++.|+.|+|+.+   ++|+|+++.|++++.++ ..+++|||.+..
T Consensus        83 ~~~iv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~nil~~~~~~~~~l~dfg~~~~  159 (267)
T PHA03390         83 GHVLIMDYIKDGDLFDLLKKEGKLSEAEVKKIIRQLVEALNDLHKHN---IIHNDIKLENVLYDRAKDRIYLCDYGLCKI  159 (267)
T ss_pred             eeEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEEeCCCCeEEEecCcccee
Confidence            578999998753        247999999999999999999999998   99999999999998887 899999998765


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       160 ~~  161 (267)
T PHA03390        160 IG  161 (267)
T ss_pred             cC
Confidence            44

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.09  E-value=2.1e-10  Score=83.40  Aligned_cols=69  Identities=30%  Similarity=0.425  Sum_probs=62.0

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+|+||++++        ...+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||++..+
T Consensus        75 ~~~lv~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~~L~~lH~~g---ivHrDLkp~NIli~~~~~vkL~DfG~~~~~  151 (360)
T cd05627          75 NLYLIMEFLPGGDMMTLLMKKDTLSEEATQFYIAETVLAIDAIHQLG---FIHRDIKPDNLLLDAKGHVKLSDFGLCTGL  151 (360)
T ss_pred             EEEEEEeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEccCCCHHHEEECCCCCEEEeeccCCccc
Confidence            579999998764        345899999999999999999999998   999999999999999999999999987654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.09  E-value=2.9e-10  Score=79.71  Aligned_cols=71  Identities=31%  Similarity=0.406  Sum_probs=62.1

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+++||++++        ...+++..+..++.+++.|+.|||+.+   ++|+++++.|++++.++.++++|||.+...
T Consensus        74 ~~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~  150 (288)
T cd07833          74 RLYLVFEYVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHN---IIHRDIKPENILVSESGVLKLCDFGFARAL  150 (288)
T ss_pred             EEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEECCCCCEEEEeeeccccc
Confidence            478999998763        234889999999999999999999998   999999999999999999999999987765


Q ss_pred             ec
Q 043694           82 VK   83 (142)
Q Consensus        82 ~~   83 (142)
                      ..
T Consensus       151 ~~  152 (288)
T cd07833         151 RA  152 (288)
T ss_pred             CC
Confidence            43

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.09  E-value=1.6e-10  Score=87.19  Aligned_cols=130  Identities=18%  Similarity=0.162  Sum_probs=87.7

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEe-CCCCceEEeccccee
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL-DEDLKSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~-~~~~~~~l~~fg~~~   79 (142)
                      .+.|+|+|.+.++.        ..+. ..+..|+.+++.++.|||.++   ++|||+++.||++ +..+.+++++||..+
T Consensus       389 ~~~~~v~e~l~g~ell~ri~~~~~~~-~e~~~w~~~lv~Av~~LH~~g---vvhRDLkp~NIL~~~~~g~lrltyFG~a~  464 (612)
T KOG0603|consen  389 KEIYLVMELLDGGELLRRIRSKPEFC-SEASQWAAELVSAVDYLHEQG---VVHRDLKPGNILLDGSAGHLRLTYFGFWS  464 (612)
T ss_pred             ceeeeeehhccccHHHHHHHhcchhH-HHHHHHHHHHHHHHHHHHhcC---eeecCCChhheeecCCCCcEEEEEechhh
Confidence            46889999877642        2233 566779999999999999998   9999999999999 577889999999988


Q ss_pred             eeecC--ccccccc-------ccccchhhhhhhhcCCcceeecC----------------CC-CCCCCHHHHHHHHHHHH
Q 043694           80 IFVKD--DLEANTN-------RIVGTQESYNLWKDGKGRKLMDP----------------SL-DDTHSSWKLLTCLQIAL  133 (142)
Q Consensus        80 ~~~~~--~~~~~~~-------~~~g~~~~~~~~~~~~~~~~~d~----------------~~-~~~~~~~~~~~~~~i~~  133 (142)
                      .+...  ..+.+..       ...+...+-+.|+.|.+...+-.                ++ .++++.......-++..
T Consensus       465 ~~~~~~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~~ei~~~i~~~~~s~~vS~~AKdLl~  544 (612)
T KOG0603|consen  465 ELERSCDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAGIEIHTRIQMPKFSECVSDEAKDLLQ  544 (612)
T ss_pred             hCchhhcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCchHHHHHhhcCCccccccCHHHHHHHH
Confidence            87655  1111100       01111226777877743332221                11 13344444556667778


Q ss_pred             hccCccCCC
Q 043694          134 LCVQENSND  142 (142)
Q Consensus       134 ~C~~~~p~~  142 (142)
                      +|++.||++
T Consensus       545 ~LL~~dP~~  553 (612)
T KOG0603|consen  545 QLLQVDPAL  553 (612)
T ss_pred             HhccCChhh
Confidence            899998863

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.09  E-value=2.2e-10  Score=87.18  Aligned_cols=68  Identities=31%  Similarity=0.446  Sum_probs=62.4

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+|+||||.+++.        ..|.+.....++.++..++.+.|..+   +||||+++.||+++.++.+|++|||++.-
T Consensus       703 nLYFVMdYIPGGDmMSLLIrmgIFeE~LARFYIAEltcAiesVHkmG---FIHRDiKPDNILIDrdGHIKLTDFGLCTG  778 (1034)
T KOG0608|consen  703 NLYFVMDYIPGGDMMSLLIRMGIFEEDLARFYIAELTCAIESVHKMG---FIHRDIKPDNILIDRDGHIKLTDFGLCTG  778 (1034)
T ss_pred             ceEEEEeccCCccHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhcc---ceecccCccceEEccCCceeeeecccccc
Confidence            5899999999875        55888888899999999999999999   99999999999999999999999998754

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.08  E-value=3.4e-10  Score=79.18  Aligned_cols=72  Identities=31%  Similarity=0.529  Sum_probs=62.7

Q ss_pred             hhhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.|+++||.+++        ...+++..+..++.+++.|+.|||+.+   ++|+++++.|++++.++.++++|||.+..
T Consensus        73 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~---~~h~dl~p~nil~~~~~~~~l~d~g~~~~  149 (287)
T cd07840          73 GSIYMVFEYMDHDLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSNG---ILHRDIKGSNILINNDGVLKLADFGLARP  149 (287)
T ss_pred             CcEEEEeccccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCcHHHeEEcCCCCEEEccccceee
Confidence            4678889887641        246899999999999999999999998   99999999999999999999999998876


Q ss_pred             eec
Q 043694           81 FVK   83 (142)
Q Consensus        81 ~~~   83 (142)
                      ...
T Consensus       150 ~~~  152 (287)
T cd07840         150 YTK  152 (287)
T ss_pred             ccC
Confidence            643

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.08  E-value=8.5e-10  Score=77.99  Aligned_cols=70  Identities=27%  Similarity=0.389  Sum_probs=61.5

Q ss_pred             hhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      +.|+|+||.+++.       ..+++..+..++.+++.|+.|||+.+   +.|+++++.|++++.++..+++|||++....
T Consensus        90 ~~~lv~e~~~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~g---i~H~dL~p~Nili~~~~~~kL~dfg~~~~~~  166 (293)
T cd06647          90 ELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQIT  166 (293)
T ss_pred             cEEEEEecCCCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCC---EeeccCCHHHEEEcCCCCEEEccCcceeccc
Confidence            5789999987642       35889999999999999999999998   9999999999999999999999999876544

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.08  E-value=3.8e-10  Score=81.18  Aligned_cols=70  Identities=21%  Similarity=0.327  Sum_probs=62.1

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.|+|+||++++         ...+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||++..
T Consensus        75 ~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nill~~~~~~kl~Dfg~~~~  151 (331)
T cd05597          75 NLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQLG---YVHRDIKPDNVLLDKNGHIRLADFGSCLR  151 (331)
T ss_pred             eEEEEEecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eEECCCCHHHEEECCCCCEEEEECCceee
Confidence            579999998763         245888999999999999999999998   99999999999999999999999998866


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      +.
T Consensus       152 ~~  153 (331)
T cd05597         152 LL  153 (331)
T ss_pred             cC
Confidence            54

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.08  E-value=1.3e-10  Score=78.70  Aligned_cols=116  Identities=22%  Similarity=0.297  Sum_probs=84.1

Q ss_pred             eeeeeCCCcc-----cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC-CCceEEecccceeeeecCcc
Q 043694           13 LIFDVDPIRR-----FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE-DLKSKISDFGLARIFVKDDL   86 (142)
Q Consensus        13 lv~e~~~~~~-----~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~-~~~~~l~~fg~~~~~~~~~~   86 (142)
                      |++||..+..     ..|+-..+..++.+++.|+.|||+.+   ++|+|++|.|++++. ....++.|+|++.++.++..
T Consensus       112 LiFE~v~n~Dfk~ly~tl~d~dIryY~~elLkALdyCHS~G---ImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~e  188 (338)
T KOG0668|consen  112 LIFEYVNNTDFKQLYPTLTDYDIRYYIYELLKALDYCHSMG---IMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKE  188 (338)
T ss_pred             hHhhhhccccHHHHhhhhchhhHHHHHHHHHHHHhHHHhcC---cccccCCcceeeechhhceeeeeecchHhhcCCCce
Confidence            4566665543     33777788889999999999999999   999999999999985 56799999999998765532


Q ss_pred             cc--cccccccchh----------hhhhhhcCCcceee----cCCCCCCCCHHHHHHHHHH
Q 043694           87 EA--NTNRIVGTQE----------SYNLWKDGKGRKLM----DPSLDDTHSSWKLLTCLQI  131 (142)
Q Consensus        87 ~~--~~~~~~g~~~----------~~~~~~~~~~~~~~----d~~~~~~~~~~~~~~~~~i  131 (142)
                      ..  ..++..-.|+          ..+.|+.|-+.+.+    +|-..|..+.+++-+++.+
T Consensus       189 YnVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakV  249 (338)
T KOG0668|consen  189 YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKV  249 (338)
T ss_pred             eeeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHH
Confidence            11  1111111111          78889888644332    5677788888888887765

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.08  E-value=6.4e-10  Score=78.94  Aligned_cols=69  Identities=26%  Similarity=0.379  Sum_probs=60.8

Q ss_pred             hhhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.|+++||.+++        ...+++..+..++.+++.|+.|+|+.+   ++|+++++.||+++.++.+++.|||+++.
T Consensus        74 ~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~NIll~~~~~~~l~dfg~~~~  150 (305)
T cd05609          74 RHLCMVMEYVEGGDCATLLKNIGALPVDMARMYFAETVLALEYLHNYG---IVHRDLKPDNLLITSMGHIKLTDFGLSKI  150 (305)
T ss_pred             CEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCchHHEEECCCCCEEEeeCCCccc
Confidence            3578999998753        255899999999999999999999988   99999999999999999999999998753

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.08  E-value=2.6e-10  Score=83.50  Aligned_cols=69  Identities=29%  Similarity=0.384  Sum_probs=61.3

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.|+|+||++++.        ..+++..+..++.|++.|+.|||..+   ++|+|+++.||+++.++.++++|||++..
T Consensus        74 ~~~~lv~E~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~~LH~~g---ivHrDlKp~Nili~~~~~~kL~DFGl~~~  150 (381)
T cd05626          74 DNLYFVMDYIPGGDMMSLLIRMEVFPEVLARFYIAELTLAIESVHKMG---FIHRDIKPDNILIDLDGHIKLTDFGLCTG  150 (381)
T ss_pred             CEEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecCCcHHHEEECCCCCEEEeeCcCCcc
Confidence            35899999988643        45888899999999999999999998   99999999999999999999999998753

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.08  E-value=2.7e-10  Score=83.18  Aligned_cols=68  Identities=31%  Similarity=0.449  Sum_probs=60.5

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      .+.|+|+||++++.        ..++......++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++.
T Consensus        74 ~~~~lv~E~~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~~---ivHrDlkp~Nill~~~~~ikL~DFG~a~  149 (376)
T cd05598          74 DNLYFVMDYIPGGDMMSLLIRLGIFEEDLARFYIAELTCAIESVHKMG---FIHRDIKPDNILIDRDGHIKLTDFGLCT  149 (376)
T ss_pred             CEEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCCHHHEEECCCCCEEEEeCCCCc
Confidence            35789999987642        45788888899999999999999998   9999999999999999999999999864

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.08  E-value=3.8e-10  Score=80.41  Aligned_cols=70  Identities=34%  Similarity=0.531  Sum_probs=58.5

Q ss_pred             hhheeeeeCCCc----------------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC----CCCc
Q 043694           10 YLYLIFDVDPIR----------------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD----EDLK   69 (142)
Q Consensus        10 ~~~lv~e~~~~~----------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~----~~~~   69 (142)
                      +.|+++||+.+.                ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||++.    .++.
T Consensus        74 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~---ivHrDlkp~Nil~~~~~~~~~~  150 (317)
T cd07868          74 KVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANW---VLHRDLKPANILVMGEGPERGR  150 (317)
T ss_pred             EEEEEEeccCCCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCC---EEcCCCCHHHEEEecCCCCcCc
Confidence            467888886532                124888999999999999999999998   99999999999993    4568


Q ss_pred             eEEecccceeeee
Q 043694           70 SKISDFGLARIFV   82 (142)
Q Consensus        70 ~~l~~fg~~~~~~   82 (142)
                      ++++|||+++.+.
T Consensus       151 ~kl~DfG~a~~~~  163 (317)
T cd07868         151 VKIADMGFARLFN  163 (317)
T ss_pred             EEEeecCceeccC
Confidence            9999999987654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.08  E-value=2.8e-10  Score=78.21  Aligned_cols=72  Identities=19%  Similarity=0.340  Sum_probs=62.6

Q ss_pred             hhhheeeeeCCCc------------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccc
Q 043694            9 LYLYLIFDVDPIR------------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFG   76 (142)
Q Consensus         9 ~~~~lv~e~~~~~------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg   76 (142)
                      .+.++++|+.+++            ...+++..+..++.+++.|+.++|+.+   +.|+++++.|++++.+..++++|||
T Consensus        72 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~---~~H~dl~~~nil~~~~~~~~l~d~~  148 (258)
T cd08215          72 GKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRK---ILHRDIKPQNIFLTSNGLVKLGDFG  148 (258)
T ss_pred             CEEEEEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCC---EecccCChHHeEEcCCCcEEECCcc
Confidence            3577889987653            256899999999999999999999998   9999999999999999999999999


Q ss_pred             ceeeeec
Q 043694           77 LARIFVK   83 (142)
Q Consensus        77 ~~~~~~~   83 (142)
                      .+.....
T Consensus       149 ~~~~~~~  155 (258)
T cd08215         149 ISKVLSS  155 (258)
T ss_pred             ceeeccc
Confidence            8776543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.08  E-value=3.8e-10  Score=77.67  Aligned_cols=71  Identities=28%  Similarity=0.483  Sum_probs=61.3

Q ss_pred             hhheeeeeCCCcc------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccc
Q 043694           10 YLYLIFDVDPIRR------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      ..|+++||.++..            ..+++..+..++.+++.|+.|+|+.+   ++|+++++.|++++.+..+++.|||.
T Consensus        73 ~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~---i~h~~l~~~ni~~~~~~~~kl~d~g~  149 (256)
T cd08530          73 KLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQK---ILHRDLKSANILLVANDLVKIGDLGI  149 (256)
T ss_pred             EEEEEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCC---cccCCCCcceEEEecCCcEEEeeccc
Confidence            4688899876532            45889999999999999999999998   99999999999999999999999998


Q ss_pred             eeeeec
Q 043694           78 ARIFVK   83 (142)
Q Consensus        78 ~~~~~~   83 (142)
                      +.....
T Consensus       150 ~~~~~~  155 (256)
T cd08530         150 SKVLKK  155 (256)
T ss_pred             hhhhcc
Confidence            766543

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.08  E-value=2.6e-10  Score=78.71  Aligned_cols=69  Identities=36%  Similarity=0.510  Sum_probs=61.3

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+++||++++.        ..+++..+..++.|++.|+.|+|+.+   ++|+++++.|++++.++.+++.|||++...
T Consensus        67 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~lH~~~---i~H~di~~~nil~~~~~~~~l~dfg~~~~~  143 (265)
T cd05579          67 NLYLVMEYLPGGDLASLLENVGSLDEDVARIYIAEIVLALEYLHSNG---IIHRDLKPDNILIDSNGHLKLTDFGLSKVG  143 (265)
T ss_pred             EEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcC---eecCCCCHHHeEEcCCCCEEEEecccchhc
Confidence            4789999987532        46899999999999999999999998   999999999999999999999999987654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.08  E-value=4.6e-10  Score=79.48  Aligned_cols=70  Identities=31%  Similarity=0.463  Sum_probs=61.3

Q ss_pred             hhheeeeeCCC--------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPI--------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+|++++|...        ....+++.++..++.+++.++.|+|+.+   ++|+++++.||+++.++.+++.|||++...
T Consensus        89 ~~~lv~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  165 (311)
T cd07866          89 SVYMVTPYMDHDLSGLLENPSVKLTESQIKCYMLQLLEGINYLHENH---ILHRDIKAANILIDNQGILKIADFGLARPY  165 (311)
T ss_pred             eEEEEEecCCcCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEECcCccchhc
Confidence            46888888653        2346999999999999999999999998   999999999999999999999999988754


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       166 ~  166 (311)
T cd07866         166 D  166 (311)
T ss_pred             c
Confidence            3

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.07  E-value=5e-10  Score=77.88  Aligned_cols=70  Identities=26%  Similarity=0.371  Sum_probs=60.8

Q ss_pred             hhhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.|+++||.+++        ...+++.....++.|++.|+.|+|+.+   ++|+++++.|++++.++.++++|||++..
T Consensus        79 ~~~~l~~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~LH~~~---i~H~~l~p~nil~~~~~~~~l~dfg~~~~  155 (266)
T cd06651          79 KTLTIFMEYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYLHSNM---IVHRDIKGANILRDSAGNVKLGDFGASKR  155 (266)
T ss_pred             CEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEECCCCCEEEccCCCccc
Confidence            3567889987653        245889999999999999999999988   99999999999999999999999998765


Q ss_pred             e
Q 043694           81 F   81 (142)
Q Consensus        81 ~   81 (142)
                      +
T Consensus       156 ~  156 (266)
T cd06651         156 L  156 (266)
T ss_pred             c
Confidence            4

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.07  E-value=3.1e-10  Score=79.87  Aligned_cols=70  Identities=24%  Similarity=0.381  Sum_probs=60.7

Q ss_pred             hhhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694            9 LYLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus         9 ~~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+.|+++||.+++.       ..+++..+..++.+++.++.|+|+.+   ++|+++++.|++++.++.++++|||.+...
T Consensus        89 ~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~  165 (285)
T cd06648          89 DELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLAVLKALSFLHAQG---VIHRDIKSDSILLTSDGRVKLSDFGFCAQV  165 (285)
T ss_pred             CeEEEEEeccCCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCChhhEEEcCCCcEEEcccccchhh
Confidence            35678899876532       45888999999999999999999998   999999999999999999999999976644

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>PTZ00284 protein kinase; Provisional

Probab=99.07  E-value=4e-10  Score=84.63  Aligned_cols=68  Identities=21%  Similarity=0.270  Sum_probs=55.0

Q ss_pred             hhheeeeeCCC-------cccccCHHHHHHHHHHHHHHhhhhhcc-CCCceEecccCCCcEEeCCCC-------------
Q 043694           10 YLYLIFDVDPI-------RRFILDWKTCIHIIQGITQGLLYLQEY-SKLIVIHQDLKASNILLDEDL-------------   68 (142)
Q Consensus        10 ~~~lv~e~~~~-------~~~~l~~~~~~~~~~~i~~~l~~lh~~-~~~~i~h~~l~~~nil~~~~~-------------   68 (142)
                      +.|+|++++.+       ....+++..+..++.|++.|+.|||.. +   ++|+|+++.||+++.++             
T Consensus       206 ~~~iv~~~~g~~l~~~l~~~~~l~~~~~~~i~~qi~~aL~yLH~~~g---IiHrDlKP~NILl~~~~~~~~~~~~~~~~~  282 (467)
T PTZ00284        206 HMCIVMPKYGPCLLDWIMKHGPFSHRHLAQIIFQTGVALDYFHTELH---LMHTDLKPENILMETSDTVVDPVTNRALPP  282 (467)
T ss_pred             eEEEEEeccCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCC---eecCCCCHHHEEEecCCcccccccccccCC
Confidence            45677776533       224689999999999999999999974 7   99999999999997654             


Q ss_pred             ---ceEEecccceee
Q 043694           69 ---KSKISDFGLARI   80 (142)
Q Consensus        69 ---~~~l~~fg~~~~   80 (142)
                         .+++.|||.+..
T Consensus       283 ~~~~vkl~DfG~~~~  297 (467)
T PTZ00284        283 DPCRVRICDLGGCCD  297 (467)
T ss_pred             CCceEEECCCCcccc
Confidence               489999997643

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.06  E-value=5.6e-10  Score=78.01  Aligned_cols=71  Identities=31%  Similarity=0.470  Sum_probs=62.1

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+++||.++.        ...+++.++..++.+++.++.|+|+.+   ++|+++++.||+++.++..+++|||.+...
T Consensus        72 ~~~~v~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dl~p~nili~~~~~~~l~df~~~~~~  148 (283)
T cd05118          72 DLYLVFEFMDTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHG---ILHRDLKPENLLINTEGVLKLADFGLARSF  148 (283)
T ss_pred             CEEEEEeccCCCHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHCC---eeecCcCHHHEEECCCCcEEEeeeeeeEec
Confidence            468899987652        246899999999999999999999998   999999999999999999999999988765


Q ss_pred             ec
Q 043694           82 VK   83 (142)
Q Consensus        82 ~~   83 (142)
                      ..
T Consensus       149 ~~  150 (283)
T cd05118         149 GS  150 (283)
T ss_pred             CC
Confidence            43

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.06  E-value=6.9e-10  Score=78.96  Aligned_cols=70  Identities=34%  Similarity=0.449  Sum_probs=60.9

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||+.++        ...+++.++..++.+++.++.|+|+.+   ++|+++++.|++++.++.++++|||.+...
T Consensus        89 ~~~lv~e~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~---i~H~dl~p~nil~~~~~~~kl~dfg~~~~~  165 (308)
T cd06634          89 TAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSASIM  165 (308)
T ss_pred             eeEEEEEccCCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHhEEECCCCcEEECCcccceee
Confidence            478899987542        345889999999999999999999998   999999999999999999999999987765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       166 ~  166 (308)
T cd06634         166 A  166 (308)
T ss_pred             c
Confidence            4

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.06  E-value=9.7e-10  Score=76.28  Aligned_cols=70  Identities=26%  Similarity=0.349  Sum_probs=61.2

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.|+++||++++.        ..+++..+..++.+++.++.|+|+.+   ++|+++++.|++++.++..++.|||.+..
T Consensus        75 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~  151 (265)
T cd06631          75 NTISIFMEFVPGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLHNNC---VVHRDIKGNNVMLMPNGIIKLIDFGCARR  151 (265)
T ss_pred             CeEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCcCHHhEEECCCCeEEeccchhhHh
Confidence            35789999987632        45889999999999999999999988   99999999999999999999999998764


Q ss_pred             e
Q 043694           81 F   81 (142)
Q Consensus        81 ~   81 (142)
                      .
T Consensus       152 ~  152 (265)
T cd06631         152 L  152 (265)
T ss_pred             h
Confidence            3

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.06  E-value=6e-10  Score=78.81  Aligned_cols=71  Identities=24%  Similarity=0.346  Sum_probs=62.3

Q ss_pred             hhhheeeeeCCCc-------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694            9 LYLYLIFDVDPIR-------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus         9 ~~~~lv~e~~~~~-------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+.|+++||.+++       ...+++.....++.+++.++.|+|+.+   ++|+++++.|++++.++..+++|||.+...
T Consensus        90 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~g---ivH~dl~p~Nilv~~~~~~~l~dfg~~~~~  166 (292)
T cd06657          90 DELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLKALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQV  166 (292)
T ss_pred             CEEEEEEecCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEEcccccceec
Confidence            4578999998764       245899999999999999999999998   999999999999999999999999987655


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       167 ~  167 (292)
T cd06657         167 S  167 (292)
T ss_pred             c
Confidence            4

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.06  E-value=4.6e-10  Score=77.30  Aligned_cols=71  Identities=32%  Similarity=0.449  Sum_probs=61.6

Q ss_pred             hhheeeeeCCCcc--------cc--cCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR--------FI--LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~--l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ..|+++||.+++.        ..  +++.++..++.+++.++.++|+.+   ++|+|+++.|++++.++.++++|||.+.
T Consensus        75 ~~~~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~---~~h~dl~~~nil~~~~~~~~l~dfg~~~  151 (258)
T smart00219       75 PLMIVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKN---FIHRDLAARNCLVGENLVVKISDFGLSR  151 (258)
T ss_pred             eeEEEEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcCC---eeecccccceEEEccCCeEEEcccCCce
Confidence            4788899876522        22  899999999999999999999998   9999999999999999999999999887


Q ss_pred             eeec
Q 043694           80 IFVK   83 (142)
Q Consensus        80 ~~~~   83 (142)
                      ....
T Consensus       152 ~~~~  155 (258)
T smart00219      152 DLYD  155 (258)
T ss_pred             eccc
Confidence            6543

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.06  E-value=3.8e-10  Score=81.09  Aligned_cols=70  Identities=37%  Similarity=0.480  Sum_probs=60.1

Q ss_pred             hhheeeeeCCC-------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPI-------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~-------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ..|+++++...       ....+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||.+..+.
T Consensus        80 ~~~~~~e~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~g---ivH~dlkp~Nili~~~~~~kl~Dfg~a~~~~  156 (332)
T cd07857          80 ELYLYEELMEADLHQIIRSGQPLTDAHFQSFIYQILCGLKYIHSAN---VLHRDLKPGNLLVNADCELKICDFGLARGFS  156 (332)
T ss_pred             cEEEEEecccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHeEEcCCCCEEeCcCCCceecc
Confidence            35677777543       3356899999999999999999999998   9999999999999999999999999887543

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.06  E-value=1.9e-09  Score=74.99  Aligned_cols=70  Identities=29%  Similarity=0.463  Sum_probs=58.3

Q ss_pred             hhhheeeeeCCCcc---------ccc--CHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC-CCceEEeccc
Q 043694            9 LYLYLIFDVDPIRR---------FIL--DWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE-DLKSKISDFG   76 (142)
Q Consensus         9 ~~~~lv~e~~~~~~---------~~l--~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~-~~~~~l~~fg   76 (142)
                      .+.|+++||.+++.         ..+  ++..+..++.|++.|+.|+|+.+   ++|+++++.||+++. +..+++.|||
T Consensus        78 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---i~h~dl~p~nil~~~~~~~~~l~dfg  154 (268)
T cd06624          78 GFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQ---IVHRDIKGDNVLVNTYSGVVKISDFG  154 (268)
T ss_pred             CEEEEEEecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHCC---EeecCCCHHHEEEcCCCCeEEEecch
Confidence            35788999876532         234  77788888999999999999988   999999999999975 6789999999


Q ss_pred             ceeee
Q 043694           77 LARIF   81 (142)
Q Consensus        77 ~~~~~   81 (142)
                      .+...
T Consensus       155 ~~~~~  159 (268)
T cd06624         155 TSKRL  159 (268)
T ss_pred             hheec
Confidence            87654

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.05  E-value=2.8e-10  Score=78.54  Aligned_cols=70  Identities=26%  Similarity=0.448  Sum_probs=61.1

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      +.|+++||+.++.          ..+++.++..++.+++.++.|+|+.+   ++|+++++.|++++.+...++.|||.+.
T Consensus        73 ~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~~l~~~nil~~~~~~~~l~d~~~~~  149 (256)
T cd08218          73 NLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTIKLGDFGIAR  149 (256)
T ss_pred             eEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEcCCCCEEEeecccee
Confidence            5789999976532          34788999999999999999999988   9999999999999999999999999886


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      .+.
T Consensus       150 ~~~  152 (256)
T cd08218         150 VLN  152 (256)
T ss_pred             ecC
Confidence            553

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.05  E-value=7.7e-10  Score=77.45  Aligned_cols=69  Identities=35%  Similarity=0.544  Sum_probs=60.1

Q ss_pred             hheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           11 LYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        11 ~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .|+++||+.+.         ...+++..+..++.+++.|+.|||+.+   ++|+++++.|++++.++.++++|||.+..+
T Consensus        81 ~~l~~e~~~~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~---i~h~~l~~~nili~~~~~~~l~dfg~~~~~  157 (287)
T cd07838          81 LTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHR---IVHRDLKPQNILVTSDGQVKIADFGLARIY  157 (287)
T ss_pred             eEEEehhcccCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCChhhEEEccCCCEEEeccCcceec
Confidence            77888886531         235899999999999999999999998   999999999999999999999999988765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       158 ~  158 (287)
T cd07838         158 S  158 (287)
T ss_pred             c
Confidence            4

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.05  E-value=4.3e-10  Score=77.75  Aligned_cols=71  Identities=25%  Similarity=0.373  Sum_probs=62.7

Q ss_pred             hhhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhc-cCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            9 LYLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQE-YSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      .+.|+++||.+++        ...+++..+..++.+++.++.|+|+ .+   ++|+++++.||+++.++..+++|||.+.
T Consensus        72 ~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lh~~~~---~~H~~l~~~ni~~~~~~~~~l~df~~~~  148 (264)
T cd06623          72 GEISIVLEYMDGGSLADLLKKVGKIPEPVLAYIARQILKGLDYLHTKRH---IIHRDIKPSNLLINSKGEVKIADFGISK  148 (264)
T ss_pred             CeEEEEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhccCC---CccCCCCHHHEEECCCCCEEEccCccce
Confidence            3578999998743        2568999999999999999999999 88   9999999999999999999999999887


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      ...
T Consensus       149 ~~~  151 (264)
T cd06623         149 VLE  151 (264)
T ss_pred             ecc
Confidence            654

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.05  E-value=8.3e-10  Score=77.26  Aligned_cols=71  Identities=32%  Similarity=0.382  Sum_probs=61.7

Q ss_pred             hhhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            9 LYLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ...|+|+||+.+.         ...+++.++..++.+++.++.|||+.+   ++|+++++.|++++.++.++++|||.+.
T Consensus        71 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~---i~H~dl~~~ni~i~~~~~~~l~d~~~~~  147 (283)
T cd07830          71 DELYFVFEYMEGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHG---FFHRDLKPENLLVSGPEVVKIADFGLAR  147 (283)
T ss_pred             CcEEEEEecCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChhhEEEcCCCCEEEeecccce
Confidence            4578999987431         136899999999999999999999998   9999999999999999999999999887


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      ...
T Consensus       148 ~~~  150 (283)
T cd07830         148 EIR  150 (283)
T ss_pred             ecc
Confidence            554

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.05  E-value=5.8e-10  Score=77.23  Aligned_cols=72  Identities=33%  Similarity=0.429  Sum_probs=61.8

Q ss_pred             hhhheeeeeCCCcc-----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccc
Q 043694            9 LYLYLIFDVDPIRR-----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus         9 ~~~~lv~e~~~~~~-----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      ...|+++|+++++.           ..+++..+..++.+++.++.+||+.+   ++|+++++.|++++.++..++.|||.
T Consensus        72 ~~~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~---i~h~~l~p~ni~~~~~~~~~l~df~~  148 (267)
T cd06610          72 DELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNG---QIHRDIKAGNILLGEDGSVKIADFGV  148 (267)
T ss_pred             CEEEEEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHhEEEcCCCCEEEcccch
Confidence            35788999876532           35899999999999999999999998   99999999999999999999999998


Q ss_pred             eeeeec
Q 043694           78 ARIFVK   83 (142)
Q Consensus        78 ~~~~~~   83 (142)
                      +..+..
T Consensus       149 ~~~~~~  154 (267)
T cd06610         149 SASLAD  154 (267)
T ss_pred             HHHhcc
Confidence            765543

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.05  E-value=2.7e-10  Score=79.70  Aligned_cols=69  Identities=29%  Similarity=0.317  Sum_probs=60.8

Q ss_pred             hhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      +.|+|+||.+++          ...+++..+..++.+++.++.|+|+.+   ++|+++++.||+++.++..+++|||.+.
T Consensus        67 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~---i~H~di~p~Nil~~~~~~~~l~dfg~~~  143 (277)
T cd05577          67 DLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRR---IVYRDLKPENVLLDDHGNVRISDLGLAV  143 (277)
T ss_pred             eEEEEEecCCCCcHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEECCCCCEEEccCcchh
Confidence            578999997652          126899999999999999999999998   9999999999999999999999999876


Q ss_pred             ee
Q 043694           80 IF   81 (142)
Q Consensus        80 ~~   81 (142)
                      ..
T Consensus       144 ~~  145 (277)
T cd05577         144 EL  145 (277)
T ss_pred             hh
Confidence            54

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.05  E-value=4.5e-10  Score=78.64  Aligned_cols=72  Identities=29%  Similarity=0.485  Sum_probs=61.6

Q ss_pred             hhhheeeeeCCC--------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPI--------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.|+|+||...        ....+++.++..++.+++.++.|+|+.+   ++|+++++.||+++.++..++.|||.+..
T Consensus        72 ~~~~~v~e~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~ni~~~~~~~~~l~dfg~~~~  148 (286)
T cd07832          72 SGFVLVMEYMPSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANG---IMHRDLKPANLLISADGVLKIADFGLARL  148 (286)
T ss_pred             CeeEEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCcCHHHEEEcCCCcEEEeeeeeccc
Confidence            357889998722        1245899999999999999999999998   99999999999999999999999998776


Q ss_pred             eec
Q 043694           81 FVK   83 (142)
Q Consensus        81 ~~~   83 (142)
                      ...
T Consensus       149 ~~~  151 (286)
T cd07832         149 FSE  151 (286)
T ss_pred             ccC
Confidence            543

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.05  E-value=7.4e-10  Score=85.04  Aligned_cols=50  Identities=30%  Similarity=0.369  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC-CCceEEecccceeee
Q 043694           29 TCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE-DLKSKISDFGLARIF   81 (142)
Q Consensus        29 ~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~-~~~~~l~~fg~~~~~   81 (142)
                      .+..++.|++.|+.|+|+.+   ++|+|+++.||+++. ++.++++|||++..+
T Consensus       256 ~i~~i~~qll~aL~yLH~~g---IiHRDLKP~NILl~~~~~~~KL~DFGlA~~l  306 (566)
T PLN03225        256 IIQTIMRQILFALDGLHSTG---IVHRDVKPQNIIFSEGSGSFKIIDLGAAADL  306 (566)
T ss_pred             HHHHHHHHHHHHHHHHHHCC---EEeCcCCHHHEEEeCCCCcEEEEeCCCcccc
Confidence            45578999999999999998   999999999999985 578999999998754

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.04  E-value=1.1e-09  Score=77.81  Aligned_cols=70  Identities=24%  Similarity=0.259  Sum_probs=60.3

Q ss_pred             hhhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccce
Q 043694            9 LYLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA   78 (142)
Q Consensus         9 ~~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~   78 (142)
                      .+.|+++||++.+          ...+++.....++.|++.|+.|||+.+   ++|+|+++.|++++.++.+++++|+.+
T Consensus        72 ~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~---ivH~dlk~~Nili~~~~~~kl~d~~~~  148 (314)
T cd08216          72 SELYVVSPLMAYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSKG---FIHRSVKASHILLSGDGKVVLSGLRYS  148 (314)
T ss_pred             CeEEEEEeccCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCcceEEEecCCceEEecCccc
Confidence            3578889987653          234788889999999999999999998   999999999999999999999999877


Q ss_pred             eee
Q 043694           79 RIF   81 (142)
Q Consensus        79 ~~~   81 (142)
                      ..+
T Consensus       149 ~~~  151 (314)
T cd08216         149 VSM  151 (314)
T ss_pred             eee
Confidence            544

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.04  E-value=6.2e-10  Score=76.70  Aligned_cols=70  Identities=30%  Similarity=0.459  Sum_probs=61.4

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+++||.+++        ...+++..+..++.+++.++.|+|+.+   ++|+++++.|++++.++.+++.|||.+...
T Consensus        76 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~  152 (258)
T cd06632          76 NLYIFLELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLHDRN---TVHRDIKGANILVDTNGVVKLADFGMAKQV  152 (258)
T ss_pred             eEEEEEEecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEccCccceec
Confidence            578999998763        244889999999999999999999998   999999999999999999999999987654


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       153 ~  153 (258)
T cd06632         153 V  153 (258)
T ss_pred             c
Confidence            3

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.04  E-value=1.9e-09  Score=83.04  Aligned_cols=128  Identities=21%  Similarity=0.311  Sum_probs=90.7

Q ss_pred             hhheeeeeCCCcc---------ccc--CHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC-CCceEEecccc
Q 043694           10 YLYLIFDVDPIRR---------FIL--DWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE-DLKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l--~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~-~~~~~l~~fg~   77 (142)
                      |+.+.||-.++++         +++  ++.+.-.+..||+.|+.|||+..   |+|||++..|+++.. .+.+|++|||.
T Consensus       646 f~kIFMEqVPGGSLSsLLrskWGPlKDNEstm~fYtkQILeGLkYLHen~---IVHRDIKGDNVLvNTySGvlKISDFGT  722 (1226)
T KOG4279|consen  646 FFKIFMEQVPGGSLSSLLRSKWGPLKDNESTMNFYTKQILEGLKYLHENK---IVHRDIKGDNVLVNTYSGVLKISDFGT  722 (1226)
T ss_pred             eEEEEeecCCCCcHHHHHHhccCCCccchhHHHHHHHHHHHHhhhhhhcc---eeeccccCCcEEEeeccceEEeccccc
Confidence            4556677766654         345  78888889999999999999999   999999999999964 68999999999


Q ss_pred             eeeeecCcccccccccccchh----------------hhhhhhcCC-cceeec--------------------CCCCCCC
Q 043694           78 ARIFVKDDLEANTNRIVGTQE----------------SYNLWKDGK-GRKLMD--------------------PSLDDTH  120 (142)
Q Consensus        78 ~~~~~~~~~~~~~~~~~g~~~----------------~~~~~~~~~-~~~~~d--------------------~~~~~~~  120 (142)
                      ++.+....+..  ..+.|+..                +.+.|+-|- ..++..                    -..++..
T Consensus       723 sKRLAginP~T--ETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAMFkVGmyKvHP~i  800 (1226)
T KOG4279|consen  723 SKRLAGINPCT--ETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAMFKVGMYKVHPPI  800 (1226)
T ss_pred             chhhccCCccc--cccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHhhhhhcceecCCCC
Confidence            88876544322  22333311                778887663 112221                    1112345


Q ss_pred             CHHHHHHHHHHHHhccCccCCC
Q 043694          121 SSWKLLTCLQIALLCVQENSND  142 (142)
Q Consensus       121 ~~~~~~~~~~i~~~C~~~~p~~  142 (142)
                      ++....++-...++|..+||.+
T Consensus       801 Peelsaeak~FilrcFepd~~~  822 (1226)
T KOG4279|consen  801 PEELSAEAKNFILRCFEPDPCD  822 (1226)
T ss_pred             cHHHHHHHHHHHHHHcCCCccc
Confidence            6666677888899999999853

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.04  E-value=4.5e-10  Score=77.40  Aligned_cols=70  Identities=33%  Similarity=0.541  Sum_probs=59.7

Q ss_pred             hhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC-CceEEecccce
Q 043694           10 YLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED-LKSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~-~~~~l~~fg~~   78 (142)
                      +.++|+||.+++          ...+++..+..++.+++.++.|+|+.+   ++|+++++.|++++.+ ...+++|||.+
T Consensus        73 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~---i~h~dl~~~nil~~~~~~~~~l~d~~~~  149 (256)
T cd08220          73 ALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKL---ILHRDLKTQNILLDKHKMVVKIGDFGIS  149 (256)
T ss_pred             EEEEEEecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEEccCCCc
Confidence            478899998653          244899999999999999999999998   9999999999999754 56799999988


Q ss_pred             eeee
Q 043694           79 RIFV   82 (142)
Q Consensus        79 ~~~~   82 (142)
                      ....
T Consensus       150 ~~~~  153 (256)
T cd08220         150 KILS  153 (256)
T ss_pred             eecC
Confidence            7654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.04  E-value=1.1e-09  Score=76.10  Aligned_cols=70  Identities=27%  Similarity=0.395  Sum_probs=59.9

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC-ceEEecccceee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL-KSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~-~~~l~~fg~~~~   80 (142)
                      ..++++||.+++        ..++++..+..++.|++.|+.|||+.+   ++|+++++.||+++.++ .++++|||.+..
T Consensus        77 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~ql~~al~~LH~~~---i~H~~i~~~nil~~~~~~~~~l~dfg~~~~  153 (268)
T cd06630          77 HFNLFVEWMAGGSVSHLLSKYGAFKEAVIINYTEQLLRGLSYLHENQ---IIHRDVKGANLLIDSTGQRLRIADFGAAAR  153 (268)
T ss_pred             eEEEEEeccCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEEcccccccc
Confidence            467889987753        246889999999999999999999998   99999999999997664 689999998766


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      +.
T Consensus       154 ~~  155 (268)
T cd06630         154 LA  155 (268)
T ss_pred             cc
Confidence            54

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.04  E-value=7.9e-10  Score=77.65  Aligned_cols=70  Identities=23%  Similarity=0.348  Sum_probs=60.5

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhc-cCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQE-YSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      .+.|+++||.+++.        ..+++..+..++.+++.++.|+|+ .+   ++|+++++.|++++.++.+++.|||++.
T Consensus        76 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~---i~H~dl~p~nil~~~~~~~~l~d~gl~~  152 (284)
T cd06620          76 NNICMCMEFMDCGSLDRIYKKGGPIPVEILGKIAVAVVEGLTYLYNVHR---IMHRDIKPSNILVNSRGQIKLCDFGVSG  152 (284)
T ss_pred             CEEEEEEecCCCCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhcC---eeccCCCHHHEEECCCCcEEEccCCccc
Confidence            35789999987643        458899999999999999999997 45   9999999999999999999999999876


Q ss_pred             ee
Q 043694           80 IF   81 (142)
Q Consensus        80 ~~   81 (142)
                      ..
T Consensus       153 ~~  154 (284)
T cd06620         153 EL  154 (284)
T ss_pred             ch
Confidence            44

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.03  E-value=8.6e-10  Score=73.59  Aligned_cols=68  Identities=21%  Similarity=0.201  Sum_probs=58.9

Q ss_pred             heeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhc-cCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           12 YLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQE-YSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        12 ~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      |+||||++++.        ..++......++.+++.++.++|. .+   ++|+|++|.|++++ ++..++.|||++....
T Consensus        93 ~lVmE~~~g~~~~~~~l~~~~~~~~~~~~i~~~l~~~l~~lH~~~g---ivHrDlkP~NIll~-~~~~~liDFG~a~~~~  168 (190)
T cd05145          93 VLVMEFIGDDGSPAPRLKDVPLEEEEAEELYEQVVEQMRRLYQEAG---LVHGDLSEYNILYH-DGKPYIIDVSQAVELD  168 (190)
T ss_pred             EEEEEEecCCCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHhCC---EecCCCChhhEEEE-CCCEEEEEcccceecC
Confidence            79999987642        236777888999999999999999 88   99999999999998 7889999999988765


Q ss_pred             c
Q 043694           83 K   83 (142)
Q Consensus        83 ~   83 (142)
                      .
T Consensus       169 ~  169 (190)
T cd05145         169 H  169 (190)
T ss_pred             C
Confidence            3

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.03  E-value=7.5e-10  Score=76.00  Aligned_cols=73  Identities=27%  Similarity=0.327  Sum_probs=62.8

Q ss_pred             hhhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ...|+++||.+++        ...+++..+..++.+++.++.|+|+.+   ++|+++++.||+++.++..++.+||.+..
T Consensus        74 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~---~~h~dl~p~ni~i~~~~~~~l~d~~~~~~  150 (260)
T cd06606          74 NTLNIFLEYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLHSNG---IVHRDIKGANILVDSDGVVKLADFGCAKR  150 (260)
T ss_pred             CeEEEEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEEcCCCCEEEcccccEEe
Confidence            3568889987542        236899999999999999999999988   99999999999999999999999998876


Q ss_pred             eecC
Q 043694           81 FVKD   84 (142)
Q Consensus        81 ~~~~   84 (142)
                      ....
T Consensus       151 ~~~~  154 (260)
T cd06606         151 LGDI  154 (260)
T ss_pred             cccc
Confidence            6543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.03  E-value=9.1e-10  Score=77.37  Aligned_cols=69  Identities=29%  Similarity=0.448  Sum_probs=57.6

Q ss_pred             hhheeeeeCCC------------cccccCHHHHHHHHHHHHHHhhhhhcc-CCCceEecccCCCcEEeCCCCceEEeccc
Q 043694           10 YLYLIFDVDPI------------RRFILDWKTCIHIIQGITQGLLYLQEY-SKLIVIHQDLKASNILLDEDLKSKISDFG   76 (142)
Q Consensus        10 ~~~lv~e~~~~------------~~~~l~~~~~~~~~~~i~~~l~~lh~~-~~~~i~h~~l~~~nil~~~~~~~~l~~fg   76 (142)
                      ..|+++||+..            ....+++..+..++.+++.|+.|+|+. +   ++|+|+++.|++++.++.++++|||
T Consensus        77 ~~~~~~e~~~~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~---i~H~dlkp~Nil~~~~~~~kl~dfg  153 (288)
T cd06616          77 DCWICMELMDISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELK---IIHRDVKPSNILLDRNGNIKLCDFG  153 (288)
T ss_pred             cEEEEEecccCCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCC---eeccCCCHHHEEEccCCcEEEeecc
Confidence            35667777543            134588999999999999999999975 6   9999999999999999999999999


Q ss_pred             ceeee
Q 043694           77 LARIF   81 (142)
Q Consensus        77 ~~~~~   81 (142)
                      ++..+
T Consensus       154 ~~~~~  158 (288)
T cd06616         154 ISGQL  158 (288)
T ss_pred             hhHHh
Confidence            87654

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.02  E-value=2.1e-09  Score=74.36  Aligned_cols=70  Identities=31%  Similarity=0.435  Sum_probs=62.2

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+++||+.++        ...+++.++..++.+++.++.|+|+.+   ++|+++++.|++++.++..++.|||.+...
T Consensus        74 ~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lh~~~---i~h~dl~~~nil~~~~~~~~l~d~~~~~~~  150 (258)
T cd05578          74 NMYLVVDLLLGGDLRYHLSQKVKFSEEQVKFWICEIVLALEYLHSKG---IIHRDIKPDNILLDEQGHVHITDFNIATKV  150 (258)
T ss_pred             eEEEEEeCCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHeEEcCCCCEEEeeccccccc
Confidence            588999998763        246999999999999999999999998   999999999999999999999999987654


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       151 ~  151 (258)
T cd05578         151 T  151 (258)
T ss_pred             C
Confidence            3

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.02  E-value=9e-10  Score=77.15  Aligned_cols=70  Identities=36%  Similarity=0.539  Sum_probs=60.4

Q ss_pred             hhhheeeeeCCCc-------c--cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            9 LYLYLIFDVDPIR-------R--FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~-------~--~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      .+.|+++||....       .  ..+++..+..++.+++.++.|+|+.+   ++|+++++.|++++.++.+++.|||.+.
T Consensus        71 ~~~~iv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~~---~~H~dl~p~nil~~~~~~~~l~df~~~~  147 (283)
T cd07835          71 NKLYLVFEFLDLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHR---VLHRDLKPQNLLIDREGALKLADFGLAR  147 (283)
T ss_pred             CeEEEEEeccCcCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCHHHEEEcCCCcEEEeeccccc
Confidence            3578888886431       1  25899999999999999999999988   9999999999999999999999999876


Q ss_pred             ee
Q 043694           80 IF   81 (142)
Q Consensus        80 ~~   81 (142)
                      ..
T Consensus       148 ~~  149 (283)
T cd07835         148 AF  149 (283)
T ss_pred             cc
Confidence            54

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.02  E-value=9.3e-10  Score=79.50  Aligned_cols=69  Identities=36%  Similarity=0.481  Sum_probs=60.7

Q ss_pred             hheeeeeCCCc------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           11 LYLIFDVDPIR------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        11 ~~lv~e~~~~~------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .|++++|....      ...+++..+..++.+++.|+.|+|+.+   ++|+++++.|++++.++..+++|||++....
T Consensus        95 ~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~g---i~H~dlkp~Nill~~~~~~kL~dfg~~~~~~  169 (343)
T cd07851          95 VYLVTHLMGADLNNIVKCQKLSDDHIQFLVYQILRGLKYIHSAG---IIHRDLKPSNIAVNEDCELKILDFGLARHTD  169 (343)
T ss_pred             EEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEECCCCCEEEcccccccccc
Confidence            78899987531      245899999999999999999999998   9999999999999999999999999887653

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.02  E-value=7.8e-10  Score=86.49  Aligned_cols=71  Identities=27%  Similarity=0.454  Sum_probs=62.6

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.|+|+||+.++.        ..+++..+..++.|++.|+.|||..+   ++|+|+++.||+++.++.+++.|||+++.
T Consensus        77 ~~~~lVmEy~~g~~L~~li~~~~~l~~~~~~~i~~qil~aL~yLH~~g---IiHrDLKP~NILl~~~g~vkL~DFGls~~  153 (669)
T cd05610          77 NNVYLVMEYLIGGDVKSLLHIYGYFDEEMAVKYISEVALALDYLHRHG---IIHRDLKPDNMLISNEGHIKLTDFGLSKV  153 (669)
T ss_pred             CEEEEEEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---EEeCCccHHHEEEcCCCCEEEEeCCCCcc
Confidence            35799999987542        34788899999999999999999998   99999999999999999999999999886


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       154 ~~  155 (669)
T cd05610         154 TL  155 (669)
T ss_pred             cc
Confidence            54

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.02  E-value=1.2e-09  Score=76.78  Aligned_cols=69  Identities=28%  Similarity=0.370  Sum_probs=60.3

Q ss_pred             hhheeeeeCCCcc------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccc
Q 043694           10 YLYLIFDVDPIRR------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      .+|+++||++++.            ..++...+..++.+++.++.|+|+.+   ++|+++++.|++++.++.+++.|||+
T Consensus        75 ~~~lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~---i~H~dl~~~nil~~~~~~~~l~dfg~  151 (287)
T cd06621          75 SIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRK---IIHRDIKPSNILLTRKGQVKLCDFGV  151 (287)
T ss_pred             eEEEEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEecCCeEEEeeccc
Confidence            4689999987532            34788888999999999999999998   99999999999999999999999998


Q ss_pred             eeee
Q 043694           78 ARIF   81 (142)
Q Consensus        78 ~~~~   81 (142)
                      +...
T Consensus       152 ~~~~  155 (287)
T cd06621         152 SGEL  155 (287)
T ss_pred             cccc
Confidence            7654

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.02  E-value=7.7e-10  Score=77.02  Aligned_cols=68  Identities=29%  Similarity=0.444  Sum_probs=58.5

Q ss_pred             hhheeeeeCCCcc-------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccc
Q 043694           10 YLYLIFDVDPIRR-------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFG   76 (142)
Q Consensus        10 ~~~lv~e~~~~~~-------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg   76 (142)
                      ..|+++||+++++             ..+++.....++.|++.|+.|+|+.+   ++|+|+++.|++++.++.++++|||
T Consensus        69 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nill~~~~~~kl~dfg  145 (269)
T cd05042          69 PYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQAD---FIHSDLALRNCQLTADLSVKIGDYG  145 (269)
T ss_pred             ceEEEEEeCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcC---EecccccHhheEecCCCcEEEeccc
Confidence            4789999987532             12457778889999999999999998   9999999999999999999999999


Q ss_pred             ceee
Q 043694           77 LARI   80 (142)
Q Consensus        77 ~~~~   80 (142)
                      ++..
T Consensus       146 ~~~~  149 (269)
T cd05042         146 LALE  149 (269)
T ss_pred             cccc
Confidence            8764

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.02  E-value=8.8e-10  Score=77.17  Aligned_cols=69  Identities=35%  Similarity=0.534  Sum_probs=60.5

Q ss_pred             hhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      +.|+++||.+++          ...+++.++..++.|++.|+.|+|+.+   ++|+++++.|++++.++.+++.|||.+.
T Consensus        72 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~h~dl~p~ni~~~~~~~~~l~d~g~~~  148 (284)
T cd07836          72 KLMLVFEYMDKDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENR---VLHRDLKPQNLLINKRGELKLADFGLAR  148 (284)
T ss_pred             cEEEEEecCCccHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHHHEEECCCCcEEEeecchhh
Confidence            468899987642          145899999999999999999999998   9999999999999999999999999876


Q ss_pred             ee
Q 043694           80 IF   81 (142)
Q Consensus        80 ~~   81 (142)
                      ..
T Consensus       149 ~~  150 (284)
T cd07836         149 AF  150 (284)
T ss_pred             hh
Confidence            44

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.02  E-value=1e-09  Score=79.27  Aligned_cols=69  Identities=32%  Similarity=0.493  Sum_probs=60.1

Q ss_pred             hheeeeeCCC------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           11 LYLIFDVDPI------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        11 ~~lv~e~~~~------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .|+|++|+.+      ....+++..+..++.|++.|+.|+|+.+   ++|+++++.|++++.++.+++.|||++....
T Consensus        95 ~~lv~e~~~~~l~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~g---i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~  169 (343)
T cd07880          95 FYLVMPFMGTDLGKLMKHEKLSEDRIQFLVYQMLKGLKYIHAAG---IIHRDLKPGNLAVNEDCELKILDFGLARQTD  169 (343)
T ss_pred             EEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEeecccccccc
Confidence            4788888743      1246899999999999999999999998   9999999999999999999999999887543

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.02  E-value=1.3e-09  Score=77.08  Aligned_cols=70  Identities=30%  Similarity=0.528  Sum_probs=62.3

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+++||++++        ...+++..+..++.+++.|+.|||+.+   ++|+++++.|++++.++.++++|||.+..+
T Consensus        90 ~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---i~H~dl~p~nili~~~~~~kl~dfg~~~~~  166 (302)
T cd07864          90 AFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHKKN---FLHRDIKCSNILLNNKGQIKLADFGLARLY  166 (302)
T ss_pred             cEEEEEcccCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCcEEeCcccccccc
Confidence            678999997652        245899999999999999999999998   999999999999999999999999988765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       167 ~  167 (302)
T cd07864         167 N  167 (302)
T ss_pred             c
Confidence            4

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.01  E-value=1.5e-09  Score=77.47  Aligned_cols=68  Identities=35%  Similarity=0.451  Sum_probs=60.0

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.|+++||+.++        ..++++.++..++.+++.++.|||+.+   ++|+++++.|++++.++.++++|||.+..
T Consensus        95 ~~~lv~e~~~~~l~~~l~~~~~~l~~~~~~~~~~qi~~al~~LH~~g---i~H~dl~p~nili~~~~~~kL~dfg~~~~  170 (313)
T cd06633          95 TAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHN---MIHRDIKAGNILLTEPGQVKLADFGSASK  170 (313)
T ss_pred             EEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCChhhEEECCCCCEEEeecCCCcc
Confidence            478999987542        356899999999999999999999998   99999999999999999999999997654

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.01  E-value=4.4e-10  Score=85.77  Aligned_cols=82  Identities=28%  Similarity=0.422  Sum_probs=66.8

Q ss_pred             hheeeeeCCCcc-----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC----CceEEecc
Q 043694           11 LYLIFDVDPIRR-----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED----LKSKISDF   75 (142)
Q Consensus        11 ~~lv~e~~~~~~-----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~----~~~~l~~f   75 (142)
                      -.+++|||.+++           .-|++...+.++..+..|+.|||+.+   |+|||+++.||++..+    .-.|++||
T Consensus        92 ~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn~---IvHRDlKP~NIvl~~Gedgq~IyKLtDf  168 (732)
T KOG4250|consen   92 PVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRENG---IVHRDLKPGNIVLQIGEDGQSIYKLTDF  168 (732)
T ss_pred             ceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHcC---ceeccCCCCcEEEeecCCCceEEeeecc
Confidence            357899998865           23999999999999999999999998   9999999999998432    34799999


Q ss_pred             cceeeeecCcccccccccccchh
Q 043694           76 GLARIFVKDDLEANTNRIVGTQE   98 (142)
Q Consensus        76 g~~~~~~~~~~~~~~~~~~g~~~   98 (142)
                      |.++.+.....   ..+.+||..
T Consensus       169 G~Arel~d~s~---~~S~vGT~~  188 (732)
T KOG4250|consen  169 GAARELDDNSL---FTSLVGTEE  188 (732)
T ss_pred             cccccCCCCCe---eeeecCchh
Confidence            99998876552   344677655

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.01  E-value=1.6e-09  Score=74.97  Aligned_cols=69  Identities=28%  Similarity=0.423  Sum_probs=58.8

Q ss_pred             hhheeeeeCCCc------------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccc
Q 043694           10 YLYLIFDVDPIR------------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      ..++++||++++            ...+++..+..++.+++.|+.|+|+.+   ++|+++++.|++++. ...+++|||.
T Consensus        76 ~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~---i~h~~l~~~nili~~-~~~~l~d~g~  151 (260)
T cd08222          76 AFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRR---ILHRDLKAKNIFLKN-NLLKIGDFGV  151 (260)
T ss_pred             ceEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcC---ccccCCChhheEeec-CCEeecccCc
Confidence            467899997753            245899999999999999999999988   999999999999975 4589999998


Q ss_pred             eeeee
Q 043694           78 ARIFV   82 (142)
Q Consensus        78 ~~~~~   82 (142)
                      +....
T Consensus       152 ~~~~~  156 (260)
T cd08222         152 SRLLM  156 (260)
T ss_pred             eeecC
Confidence            87653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.01  E-value=5.9e-10  Score=89.37  Aligned_cols=73  Identities=26%  Similarity=0.415  Sum_probs=59.0

Q ss_pred             hhheeeeeCCCcc------------cccCHHHHHHHHHHHHHHhhhhhccCC----CceEecccCCCcEEeCCC------
Q 043694           10 YLYLIFDVDPIRR------------FILDWKTCIHIIQGITQGLLYLQEYSK----LIVIHQDLKASNILLDED------   67 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------~~l~~~~~~~~~~~i~~~l~~lh~~~~----~~i~h~~l~~~nil~~~~------   67 (142)
                      .+|+|+||++++.            ..+++..++.++.|++.||.|||....    ..++|+|+++.||+++..      
T Consensus        88 ~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~  167 (1021)
T PTZ00266         88 KLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGK  167 (1021)
T ss_pred             EEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCcccccc
Confidence            4789999987632            358999999999999999999998431    239999999999999542      


Q ss_pred             -----------CceEEecccceeeee
Q 043694           68 -----------LKSKISDFGLARIFV   82 (142)
Q Consensus        68 -----------~~~~l~~fg~~~~~~   82 (142)
                                 ..++++|||++..+.
T Consensus       168 i~~~~~n~ng~~iVKLsDFGlAr~l~  193 (1021)
T PTZ00266        168 ITAQANNLNGRPIAKIGDFGLSKNIG  193 (1021)
T ss_pred             ccccccccCCCCceEEccCCcccccc
Confidence                       348999999887653

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.00  E-value=7.1e-10  Score=77.29  Aligned_cols=70  Identities=39%  Similarity=0.572  Sum_probs=62.1

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+++|+.+++.        ..+++..+..++.+++.|+.+||+.+   +.|+++++.|++++.++.+++.|||.+...
T Consensus        76 ~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~i~~ql~~~l~~Lh~~~---~~H~dl~~~ni~i~~~~~~~l~df~~~~~~  152 (280)
T cd05581          76 NLYFVLEYAPNGELLQYIRKYGSLDEKCTRFYAAEILLALEYLHSKG---IIHRDLKPENILLDKDMHIKITDFGTAKVL  152 (280)
T ss_pred             eEEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHeEECCCCCEEecCCcccccc
Confidence            5788999986533        36999999999999999999999998   999999999999999999999999987765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       153 ~  153 (280)
T cd05581         153 D  153 (280)
T ss_pred             C
Confidence            4

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.00  E-value=8.8e-10  Score=80.12  Aligned_cols=68  Identities=26%  Similarity=0.397  Sum_probs=59.8

Q ss_pred             hhheeeeeCCC--------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPI--------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.|+|++++.+        ....+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||.+..
T Consensus       131 ~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DfG~a~~  206 (357)
T PHA03209        131 ITCMVLPHYSSDLYTYLTKRSRPLPIDQALIIEKQILEGLRYLHAQR---IIHRDVKTENIFINDVDQVCIGDLGAAQF  206 (357)
T ss_pred             eeEEEEEccCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEEecCccccc
Confidence            46778887543        2356899999999999999999999998   99999999999999999999999998864

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=98.99  E-value=1.1e-09  Score=78.61  Aligned_cols=70  Identities=31%  Similarity=0.525  Sum_probs=61.3

Q ss_pred             hhheeeeeCCC-------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPI-------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~-------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      +.|+++||+.+       ....+++.....++.|++.|+.|+|+.+   ++|+++++.||+++.++.++++|||.+....
T Consensus        94 ~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~~---i~H~dl~~~nill~~~~~~kl~dfg~~~~~~  170 (335)
T PTZ00024         94 FINLVMDIMASDLKKVVDRKIRLTESQVKCILLQILNGLNVLHKWY---FMHRDLSPANIFINSKGICKIADFGLARRYG  170 (335)
T ss_pred             cEEEEEeccccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eecccccHHHeEECCCCCEEECCccceeecc
Confidence            57888998764       2245899999999999999999999998   9999999999999999999999999887654

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=98.99  E-value=1.1e-09  Score=77.89  Aligned_cols=71  Identities=34%  Similarity=0.536  Sum_probs=59.3

Q ss_pred             hhhheeeeeCCCc----------------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEe----CCCC
Q 043694            9 LYLYLIFDVDPIR----------------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL----DEDL   68 (142)
Q Consensus         9 ~~~~lv~e~~~~~----------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~----~~~~   68 (142)
                      .+.|+++||+.+.                ...+++..+..++.|++.|+.|+|+.+   ++|+|+++.||++    +.++
T Consensus        73 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~  149 (317)
T cd07867          73 RKVWLLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANW---VLHRDLKPANILVMGEGPERG  149 (317)
T ss_pred             CeEEEEEeeeCCcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCC---EEcCCCCHHHEEEccCCCCCC
Confidence            3567888886542                134888999999999999999999998   9999999999999    4557


Q ss_pred             ceEEecccceeeee
Q 043694           69 KSKISDFGLARIFV   82 (142)
Q Consensus        69 ~~~l~~fg~~~~~~   82 (142)
                      .++++|||+++...
T Consensus       150 ~~kl~DfG~a~~~~  163 (317)
T cd07867         150 RVKIADMGFARLFN  163 (317)
T ss_pred             cEEEeeccceeccC
Confidence            89999999987654

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=98.99  E-value=8.9e-10  Score=75.97  Aligned_cols=70  Identities=23%  Similarity=0.437  Sum_probs=59.2

Q ss_pred             hhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC-ceEEecccce
Q 043694           10 YLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL-KSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~-~~~l~~fg~~   78 (142)
                      +.|+++||++++          ...+++..+..++.+++.++.|+|+..   ++|+++++.||+++.+. ..++++||.+
T Consensus        73 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~---i~H~dl~~~nil~~~~~~~~~l~d~~~~  149 (257)
T cd08225          73 RLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRK---ILHRDIKSQNIFLSKNGMVAKLGDFGIA  149 (257)
T ss_pred             eEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCCHHHEEEcCCCCeEEecccccc
Confidence            468999998652          234799999999999999999999998   99999999999998764 5699999987


Q ss_pred             eeee
Q 043694           79 RIFV   82 (142)
Q Consensus        79 ~~~~   82 (142)
                      ....
T Consensus       150 ~~~~  153 (257)
T cd08225         150 RQLN  153 (257)
T ss_pred             hhcc
Confidence            6553

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=98.99  E-value=1e-09  Score=79.25  Aligned_cols=68  Identities=32%  Similarity=0.485  Sum_probs=59.1

Q ss_pred             hheeeeeCCCc-----ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           11 LYLIFDVDPIR-----RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        11 ~~lv~e~~~~~-----~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .|++++|....     ...+++..+..++.+++.|+.|+|+.+   ++|+++++.||+++.++.++++|||++...
T Consensus        95 ~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---i~H~dlkp~NIll~~~~~~kL~dfg~~~~~  167 (342)
T cd07879          95 FYLVMPYMQTDLQKIMGHPLSEDKVQYLVYQMLCGLKYIHSAG---IIHRDLKPGNLAVNEDCELKILDFGLARHA  167 (342)
T ss_pred             EEEEecccccCHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEeeCCCCcCC
Confidence            47888886542     235899999999999999999999998   999999999999999999999999987653

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=98.99  E-value=1.1e-09  Score=73.24  Aligned_cols=67  Identities=21%  Similarity=0.159  Sum_probs=57.4

Q ss_pred             hheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhh-hccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           11 LYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYL-QEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        11 ~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~l-h~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .++||||++++        ...++......++.+++.++.++ |..+   ++|+|++|.|++++ ++.+++.|||++...
T Consensus        92 ~~iVmE~i~g~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~l~H~~g---iiHrDlkP~NIli~-~~~v~LiDFG~a~~~  167 (190)
T cd05147          92 HVLVMEFIGDDGWAAPRLKDAPLSESKARELYLQVIQIMRILYQDCR---LVHADLSEYNLLYH-DGKLYIIDVSQSVEH  167 (190)
T ss_pred             CEEEEEEeCCCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEEE-CCcEEEEEccccccC
Confidence            37999998753        24578888999999999999999 6888   99999999999998 467999999998654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=98.99  E-value=8.1e-10  Score=82.67  Aligned_cols=96  Identities=26%  Similarity=0.416  Sum_probs=73.5

Q ss_pred             hheeeeeCCC---------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC---CceEEecccce
Q 043694           11 LYLIFDVDPI---------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED---LKSKISDFGLA   78 (142)
Q Consensus        11 ~~lv~e~~~~---------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~---~~~~l~~fg~~   78 (142)
                      .|-|||-+.+         ..+.|++..-..+..||+.|++|||.++   |+|+|+++.|+++...   -..|+.|||++
T Consensus       638 vFVVMEKl~GDMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~kn---IvHCDLKPENVLLas~~~FPQvKlCDFGfA  714 (888)
T KOG4236|consen  638 VFVVMEKLHGDMLEMILSSEKGRLPERITKFLVTQILVALRYLHFKN---IVHCDLKPENVLLASASPFPQVKLCDFGFA  714 (888)
T ss_pred             EEEEehhhcchHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcc---eeeccCCchheeeccCCCCCceeeccccce
Confidence            5566665433         4566889888889999999999999999   9999999999999754   36899999999


Q ss_pred             eeeecCcccccccccccchh--------------hhhhhhcCCcceee
Q 043694           79 RIFVKDDLEANTNRIVGTQE--------------SYNLWKDGKGRKLM  112 (142)
Q Consensus        79 ~~~~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~~~~  112 (142)
                      +++....-   ..+.+|+|.              ..+.|+.|.+.++-
T Consensus       715 RiIgEksF---RrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVs  759 (888)
T KOG4236|consen  715 RIIGEKSF---RRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVS  759 (888)
T ss_pred             eecchhhh---hhhhcCCccccCHHHHhhccccccccceeeeEEEEEE
Confidence            98875432   233566655              67778777655543

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.98  E-value=5.2e-10  Score=83.47  Aligned_cols=99  Identities=22%  Similarity=0.334  Sum_probs=76.5

Q ss_pred             HhhhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC-CCCceEEecccc
Q 043694            8 QLYLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD-EDLKSKISDFGL   77 (142)
Q Consensus         8 ~~~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~-~~~~~~l~~fg~   77 (142)
                      |-.+|||+|....+.         .-+++....++..||+.++.|||.--   ++|+|+++.|+.+. +-+..|+.|||+
T Consensus        89 QTKlyLiLELGD~GDl~DyImKHe~Gl~E~La~kYF~QI~~AI~YCHqLH---VVHRDLKPENVVFFEKlGlVKLTDFGF  165 (864)
T KOG4717|consen   89 QTKLYLILELGDGGDLFDYIMKHEEGLNEDLAKKYFAQIVHAISYCHQLH---VVHRDLKPENVVFFEKLGLVKLTDFGF  165 (864)
T ss_pred             cceEEEEEEecCCchHHHHHHhhhccccHHHHHHHHHHHHHHHHHHhhhh---hhcccCCcceeEEeeecCceEeeeccc
Confidence            345899999876644         33899999999999999999999887   99999999999875 568999999999


Q ss_pred             eeeeecCcccccccccccchh---------------hhhhhhcCCcceee
Q 043694           78 ARIFVKDDLEANTNRIVGTQE---------------SYNLWKDGKGRKLM  112 (142)
Q Consensus        78 ~~~~~~~~~~~~~~~~~g~~~---------------~~~~~~~~~~~~~~  112 (142)
                      +..+.++..   ....||+..               +.+.|+.|.+..++
T Consensus       166 SNkf~PG~k---L~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyML  212 (864)
T KOG4717|consen  166 SNKFQPGKK---LTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYML  212 (864)
T ss_pred             cccCCCcch---hhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHH
Confidence            877665543   223444422               78889888665544

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=98.97  E-value=1.1e-09  Score=75.32  Aligned_cols=71  Identities=34%  Similarity=0.436  Sum_probs=62.1

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+++||.+++        ...+++..+..++.+++.++.++|+.+   ++|+++++.|++++.++.+++.|||.+...
T Consensus        73 ~~~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~  149 (254)
T cd06627          73 SLYIILEYAENGSLRQIIKKFGPFPESLVAVYVYQVLQGLAYLHEQG---VIHRDIKAANILTTKDGVVKLADFGVATKL  149 (254)
T ss_pred             EEEEEEecCCCCcHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhCC---cccCCCCHHHEEECCCCCEEEeccccceec
Confidence            467888887653        246899999999999999999999998   999999999999999999999999988766


Q ss_pred             ec
Q 043694           82 VK   83 (142)
Q Consensus        82 ~~   83 (142)
                      ..
T Consensus       150 ~~  151 (254)
T cd06627         150 ND  151 (254)
T ss_pred             CC
Confidence            54

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=98.97  E-value=4.2e-09  Score=73.16  Aligned_cols=62  Identities=35%  Similarity=0.472  Sum_probs=53.1

Q ss_pred             ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeeecCc
Q 043694           22 RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD   85 (142)
Q Consensus        22 ~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~~~~   85 (142)
                      ..++++.-.-++...+.+|+.||.++-  .++|||++++||+++..+.+|+.|||++..+.++.
T Consensus       185 k~piPE~ilGk~tva~v~AL~YLKeKH--~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSk  246 (391)
T KOG0983|consen  185 KGPIPERILGKMTVAIVKALYYLKEKH--GVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSK  246 (391)
T ss_pred             cCCchHHhhhhhHHHHHHHHHHHHHhc--ceeecccCccceEEccCCCEEeecccccceeeccc
Confidence            456778777788889999999997543  49999999999999999999999999998877654

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=98.97  E-value=1.3e-09  Score=78.43  Aligned_cols=69  Identities=36%  Similarity=0.527  Sum_probs=59.3

Q ss_pred             hhheeeeeCCCc------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+++||+.+.      ...+++.....++.|++.|+.|+|+.+   ++|+++++.|++++.++.+++.|||.+...
T Consensus        84 ~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~ql~~aL~~LH~~~---iiH~dl~p~Nili~~~~~~~l~dfg~~~~~  158 (328)
T cd07856          84 DIYFVTELLGTDLHRLLTSRPLEKQFIQYFLYQILRGLKYVHSAG---VVHRDLKPSNILINENCDLKICDFGLARIQ  158 (328)
T ss_pred             cEEEEeehhccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEeECCCCCEEeCcccccccc
Confidence            467888887532      245788888889999999999999998   999999999999999999999999987654

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=98.97  E-value=3e-09  Score=74.99  Aligned_cols=70  Identities=34%  Similarity=0.568  Sum_probs=57.7

Q ss_pred             hhhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC-CCceEEecccce
Q 043694            9 LYLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE-DLKSKISDFGLA   78 (142)
Q Consensus         9 ~~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~-~~~~~l~~fg~~   78 (142)
                      .+.|+|+||.+..         ...+++..+..++.+++.|+.|||+.+   ++|+++++.|++++. +..++++|||++
T Consensus        74 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---i~H~dl~p~nill~~~~~~~kl~dfg~~  150 (294)
T PLN00009         74 KRLYLVFEYLDLDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHR---VLHRDLKPQNLLIDRRTNALKLADFGLA  150 (294)
T ss_pred             CeEEEEEecccccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCCcceEEEECCCCEEEEcccccc
Confidence            3578899997532         223577888889999999999999998   999999999999974 567899999988


Q ss_pred             eee
Q 043694           79 RIF   81 (142)
Q Consensus        79 ~~~   81 (142)
                      ...
T Consensus       151 ~~~  153 (294)
T PLN00009        151 RAF  153 (294)
T ss_pred             ccc
Confidence            654

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=98.96  E-value=1.6e-09  Score=74.07  Aligned_cols=72  Identities=29%  Similarity=0.452  Sum_probs=62.1

Q ss_pred             hhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+++||.++..         ..+++..+..++.+++.++.++|..+   ++|+++++.||+++.++.+++.|||.+..
T Consensus        71 ~~~l~~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~---i~h~dl~p~ni~i~~~~~~~l~d~~~~~~  147 (253)
T cd05122          71 ELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSNG---IIHRDIKAANILLTSDGEVKLIDFGLSAQ  147 (253)
T ss_pred             eEEEEEecCCCCcHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCC---EecCCCCHHHEEEccCCeEEEeecccccc
Confidence            4678888876422         46899999999999999999999988   99999999999999999999999998876


Q ss_pred             eecC
Q 043694           81 FVKD   84 (142)
Q Consensus        81 ~~~~   84 (142)
                      ....
T Consensus       148 ~~~~  151 (253)
T cd05122         148 LSDT  151 (253)
T ss_pred             cccc
Confidence            6543

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=98.95  E-value=3.2e-09  Score=73.94  Aligned_cols=69  Identities=33%  Similarity=0.453  Sum_probs=58.7

Q ss_pred             hhhheeeeeCCCcc-------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecc
Q 043694            9 LYLYLIFDVDPIRR-------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDF   75 (142)
Q Consensus         9 ~~~~lv~e~~~~~~-------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~f   75 (142)
                      .+.|+|+||++++.             ..+++..+..++.|++.|+.|+|+.+   ++|+|+++.|++++.+..++++||
T Consensus        68 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---i~H~dlkp~nil~~~~~~~kL~df  144 (269)
T cd05087          68 TPYLLVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNN---FIHSDLALRNCLLTADLTVKIGDY  144 (269)
T ss_pred             CCcEEEEECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCC---EeccccCcceEEEcCCCcEEECCc
Confidence            35789999987532             23566777889999999999999998   999999999999999999999999


Q ss_pred             cceee
Q 043694           76 GLARI   80 (142)
Q Consensus        76 g~~~~   80 (142)
                      |.+..
T Consensus       145 g~~~~  149 (269)
T cd05087         145 GLSHN  149 (269)
T ss_pred             ccccc
Confidence            98754

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=98.95  E-value=6.5e-09  Score=71.90  Aligned_cols=70  Identities=29%  Similarity=0.413  Sum_probs=61.2

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..++++||.+++        ...+++..+..++.+++.|+.|+|+.+   ++|+++++.||+++.++.++++|||.+...
T Consensus        73 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~---i~H~dl~~~nil~~~~~~~kl~d~g~~~~~  149 (264)
T cd06626          73 KVYIFMEYCSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLHSHG---IVHRDIKPANIFLDHNGVIKLGDFGCAVKL  149 (264)
T ss_pred             EEEEEEecCCCCcHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEccccccccc
Confidence            478899997653        234889999999999999999999998   999999999999999999999999987665


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       150 ~  150 (264)
T cd06626         150 K  150 (264)
T ss_pred             C
Confidence            4

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=98.94  E-value=3.2e-09  Score=76.79  Aligned_cols=68  Identities=37%  Similarity=0.504  Sum_probs=57.8

Q ss_pred             hheeeeeCCCc------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           11 LYLIFDVDPIR------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        11 ~~lv~e~~~~~------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .|+++++....      ...+++..+..++.|++.|+.|+|+.+   ++|+++++.||+++.++.+++.|||++...
T Consensus        97 ~~lv~~~~~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIll~~~~~~kl~dfg~~~~~  170 (345)
T cd07877          97 VYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLARHT  170 (345)
T ss_pred             EEEEehhcccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCChHHEEEcCCCCEEEecccccccc
Confidence            45666664321      135899999999999999999999998   999999999999999999999999987654

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=98.94  E-value=1.7e-08  Score=70.47  Aligned_cols=71  Identities=35%  Similarity=0.511  Sum_probs=62.0

Q ss_pred             hhhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.|+++||.+.+        ...+++..+..++.+++.++.++|+.+   ++|+++++.|++++.++.++++|||.+..
T Consensus        71 ~~~~~v~e~~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~~l~~~ni~~~~~~~~~l~d~g~~~~  147 (282)
T cd07829          71 RKLYLVFEYCDMDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSHR---ILHRDLKPQNILINRDGVLKLADFGLARA  147 (282)
T ss_pred             CceEEEecCcCcCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChheEEEcCCCCEEEecCCcccc
Confidence            3578899987642        136899999999999999999999998   99999999999999999999999998776


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       148 ~~  149 (282)
T cd07829         148 FG  149 (282)
T ss_pred             cC
Confidence            53

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=98.94  E-value=1.5e-09  Score=75.22  Aligned_cols=69  Identities=26%  Similarity=0.367  Sum_probs=60.4

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhc-cCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQE-YSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ..|+++||+++.         ...++...+..++.+++.++.|+|+ .+   ++|+++++.|++++.++..++.|||.+.
T Consensus        73 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~---i~H~dl~~~ni~~~~~~~~~l~d~g~~~  149 (265)
T cd06605          73 DISICMEYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEKHK---IIHRDVKPSNILVNSRGQIKLCDFGVSG  149 (265)
T ss_pred             EEEEEEEecCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCCC---eecCCCCHHHEEECCCCCEEEeecccch
Confidence            478899998742         2568889999999999999999999 77   9999999999999999999999999876


Q ss_pred             ee
Q 043694           80 IF   81 (142)
Q Consensus        80 ~~   81 (142)
                      ..
T Consensus       150 ~~  151 (265)
T cd06605         150 QL  151 (265)
T ss_pred             hh
Confidence            44

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=98.93  E-value=1e-09  Score=88.13  Aligned_cols=70  Identities=33%  Similarity=0.512  Sum_probs=59.9

Q ss_pred             HhhhheeeeeCCCcc-------ccc--CHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccce
Q 043694            8 QLYLYLIFDVDPIRR-------FIL--DWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA   78 (142)
Q Consensus         8 ~~~~~lv~e~~~~~~-------~~l--~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~   78 (142)
                      .+++|+=||||+...       ..+  .-...+++..+|+.|+.|+|+++   +||||++|.||+++.+..+|+.|||++
T Consensus       668 ~~~LYIQMEyCE~~ll~~iI~~N~~~~~~d~~wrLFreIlEGLaYIH~~g---iIHRDLKP~NIFLd~~~~VKIGDFGLA  744 (1351)
T KOG1035|consen  668 PLILYIQMEYCEKTLLRDIIRRNHFNSQRDEAWRLFREILEGLAYIHDQG---IIHRDLKPRNIFLDSRNSVKIGDFGLA  744 (1351)
T ss_pred             ceEEEEEHhhhhhhHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhCc---eeeccCCcceeEEcCCCCeeecccccc
Confidence            467889999998621       223  25566788999999999999999   999999999999999999999999998


Q ss_pred             ee
Q 043694           79 RI   80 (142)
Q Consensus        79 ~~   80 (142)
                      ..
T Consensus       745 t~  746 (1351)
T KOG1035|consen  745 TD  746 (1351)
T ss_pred             hh
Confidence            76

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.92  E-value=1e-09  Score=87.36  Aligned_cols=56  Identities=16%  Similarity=0.305  Sum_probs=47.4

Q ss_pred             ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC-------------------CCceEEecccceee
Q 043694           22 RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE-------------------DLKSKISDFGLARI   80 (142)
Q Consensus        22 ~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~-------------------~~~~~l~~fg~~~~   80 (142)
                      ...+++.++..++.|++.|+.|||+++   ++|+|++|.||+++.                   +...++.|||+++.
T Consensus        74 ~~~~~~~~~~~i~~qi~~al~~lH~~g---IvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~  148 (793)
T PLN00181         74 DRSVDAFECFHVFRQIVEIVNAAHSQG---IVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRR  148 (793)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHhCC---eeeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccc
Confidence            455999999999999999999999998   999999999999954                   34566777776653

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=98.92  E-value=4.7e-09  Score=72.39  Aligned_cols=69  Identities=33%  Similarity=0.516  Sum_probs=62.1

Q ss_pred             hhhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.|++++++..+        ...+++..+..++.+++.|+.+||+.+   ++|+|+++.||+++.++..++.|||.+..
T Consensus        71 ~~~~~v~~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~Lh~~~---i~H~dikp~NIl~~~~~~~~l~Dfg~~~~  147 (260)
T PF00069_consen   71 NYLYIVMEYCPGGSLQDYLQKNKPLSEEEILKIAYQILEALAYLHSKG---IVHRDIKPENILLDENGEVKLIDFGSSVK  147 (260)
T ss_dssp             SEEEEEEEEETTEBHHHHHHHHSSBBHHHHHHHHHHHHHHHHHHHHTT---EEESSBSGGGEEESTTSEEEESSGTTTEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccc
Confidence            3577899998772        466999999999999999999999998   99999999999999999999999999865

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=98.91  E-value=3.8e-09  Score=72.55  Aligned_cols=72  Identities=33%  Similarity=0.447  Sum_probs=62.2

Q ss_pred             hhhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.|+++|+++++        ...+++..+..++.+++.++.|+|+.+   ++|+++++.|++++.++..++.|||.+..
T Consensus        66 ~~~~~v~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lh~~~---~~H~~l~p~ni~~~~~~~~~l~d~~~~~~  142 (250)
T cd05123          66 EKLYLVLEYAPGGELFSHLSKEGRFSEERARFYAAEIVLALEYLHSLG---IIYRDLKPENILLDADGHIKLTDFGLAKE  142 (250)
T ss_pred             CeeEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCcceEEEcCCCcEEEeecCccee
Confidence            3578999998543        235899999999999999999999988   99999999999999999999999998766


Q ss_pred             eec
Q 043694           81 FVK   83 (142)
Q Consensus        81 ~~~   83 (142)
                      ...
T Consensus       143 ~~~  145 (250)
T cd05123         143 LSS  145 (250)
T ss_pred             ccc
Confidence            543

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>PRK09188 serine/threonine protein kinase; Provisional

Probab=98.91  E-value=2.9e-09  Score=77.61  Aligned_cols=72  Identities=22%  Similarity=0.189  Sum_probs=57.0

Q ss_pred             hhheeeeeCCCccccc-CHHHHHHHHHHHHHHhhhhhccCCCceEeccc-CCCcEEeCCCCceEEecccceeeeecC
Q 043694           10 YLYLIFDVDPIRRFIL-DWKTCIHIIQGITQGLLYLQEYSKLIVIHQDL-KASNILLDEDLKSKISDFGLARIFVKD   84 (142)
Q Consensus        10 ~~~lv~e~~~~~~~~l-~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l-~~~nil~~~~~~~~l~~fg~~~~~~~~   84 (142)
                      ..|+||||++++.... .......++.+++.++.|+|+.+   ++|+|+ ++.|++++.++.+++.|||+++.+...
T Consensus        92 ~~~LVmE~~~G~~L~~~~~~~~~~~~~~i~~aL~~lH~~g---IiHrDL~KP~NILv~~~~~ikLiDFGlA~~~~~~  165 (365)
T PRK09188         92 KDGLVRGWTEGVPLHLARPHGDPAWFRSAHRALRDLHRAG---ITHNDLAKPQNWLMGPDGEAAVIDFQLASVFRRR  165 (365)
T ss_pred             CcEEEEEccCCCCHHHhCccchHHHHHHHHHHHHHHHHCC---CeeCCCCCcceEEEcCCCCEEEEECccceecccC
Confidence            3689999987654321 11112467889999999999998   999999 899999988889999999999876543

>PHA03210 serine/threonine kinase US3; Provisional

Probab=98.91  E-value=3.7e-09  Score=80.23  Aligned_cols=55  Identities=33%  Similarity=0.459  Sum_probs=49.1

Q ss_pred             CHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeeec
Q 043694           26 DWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVK   83 (142)
Q Consensus        26 ~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~~   83 (142)
                      ...+...++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++..+..
T Consensus       265 ~~~~~~~i~~ql~~aL~yLH~~g---IiHrDLKP~NILl~~~~~vkL~DFGla~~~~~  319 (501)
T PHA03210        265 LLKQTRAIMKQLLCAVEYIHDKK---LIHRDIKLENIFLNCDGKIVLGDFGTAMPFEK  319 (501)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEEEeCCCceecCc
Confidence            34566789999999999999998   99999999999999999999999999876643

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=98.91  E-value=2.1e-09  Score=75.46  Aligned_cols=69  Identities=30%  Similarity=0.477  Sum_probs=60.4

Q ss_pred             hhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+++||++++.         ..+++..+..++.+++.++.|+|+.+   +.|+++++.|++++.++.+++.+||.+..
T Consensus        89 ~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH~~g---i~H~dl~p~ni~i~~~~~~~l~d~~~~~~  165 (286)
T cd06614          89 ELWVVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQN---VIHRDIKSDNILLSKDGSVKLADFGFAAQ  165 (286)
T ss_pred             EEEEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCChhhEEEcCCCCEEECccchhhh
Confidence            5788899887421         26999999999999999999999988   99999999999999999999999997654


Q ss_pred             e
Q 043694           81 F   81 (142)
Q Consensus        81 ~   81 (142)
                      .
T Consensus       166 ~  166 (286)
T cd06614         166 L  166 (286)
T ss_pred             h
Confidence            4

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=98.90  E-value=4.2e-09  Score=75.55  Aligned_cols=65  Identities=26%  Similarity=0.329  Sum_probs=55.5

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccc
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      +.|+++||+..+.          ..+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++..++.+|+.
T Consensus        73 ~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~---ivHrDlkp~Nill~~~~~~~~~~~~~  147 (328)
T cd08226          73 WLWVISPFMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNG---YIHRNIKASHILISGDGLVSLSGLSH  147 (328)
T ss_pred             ceEEEEecccCCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEeCCCcEEEechHH
Confidence            4678888866422          34788888899999999999999988   99999999999999888999988864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=98.88  E-value=3.4e-09  Score=74.17  Aligned_cols=69  Identities=28%  Similarity=0.453  Sum_probs=59.8

Q ss_pred             hhheeeeeCCCc-----------ccccCHHHHHHHHHHHHHHhhhhhcc-CCCceEecccCCCcEEeCCCCceEEecccc
Q 043694           10 YLYLIFDVDPIR-----------RFILDWKTCIHIIQGITQGLLYLQEY-SKLIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~-----------~~~l~~~~~~~~~~~i~~~l~~lh~~-~~~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      ..|+++||+++.           ...+++..+..++.|++.|+.|+|+. .   ++|+|+++.|++++.++.++++|||.
T Consensus        74 ~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~---i~h~dlkp~nil~~~~~~~kl~dfg~  150 (283)
T cd06617          74 DVWICMEVMDTSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLS---VIHRDVKPSNVLINRNGQVKLCDFGI  150 (283)
T ss_pred             cEEEEhhhhcccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCC---eecCCCCHHHEEECCCCCEEEeeccc
Confidence            477888886541           23589999999999999999999986 6   99999999999999999999999998


Q ss_pred             eeee
Q 043694           78 ARIF   81 (142)
Q Consensus        78 ~~~~   81 (142)
                      +...
T Consensus       151 ~~~~  154 (283)
T cd06617         151 SGYL  154 (283)
T ss_pred             cccc
Confidence            7754

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=98.87  E-value=4.8e-09  Score=74.29  Aligned_cols=69  Identities=30%  Similarity=0.442  Sum_probs=60.4

Q ss_pred             hhheeeeeCCC--------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPI--------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+++||+++        ....+++..+..++.+++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        78 ~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~  154 (301)
T cd07873          78 SLTLVFEYLDKDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRRK---VLHRDLKPQNLLINERGELKLADFGLARAK  154 (301)
T ss_pred             eEEEEEeccccCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCCHHHEEECCCCcEEECcCcchhcc
Confidence            57889999764        2245888999999999999999999998   999999999999999999999999987654

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=98.86  E-value=6.1e-09  Score=72.34  Aligned_cols=69  Identities=26%  Similarity=0.376  Sum_probs=60.5

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ++|+++||.+++.        ..+++.....++.+++.++.|+|+.+   ++|+++++.||+++.++.++++|||.+...
T Consensus        80 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~---i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~  156 (265)
T cd06652          80 TLSIFMEHMPGGSIKDQLKSYGALTENVTRKYTRQILEGVSYLHSNM---IVHRDIKGANILRDSVGNVKLGDFGASKRL  156 (265)
T ss_pred             eEEEEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEecCCCCEEECcCcccccc
Confidence            4678999987632        44788888999999999999999998   999999999999999999999999987654

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=98.85  E-value=1.6e-08  Score=66.89  Aligned_cols=72  Identities=38%  Similarity=0.580  Sum_probs=61.7

Q ss_pred             hhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC-CCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE-DLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~-~~~~~l~~fg~~~   79 (142)
                      ..++++|+..+..         ..+++..+..++.+++.++.++|+.+   +.|+++++.|++++. +...++.||+.+.
T Consensus        65 ~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~---~~H~dl~~~ni~~~~~~~~~~l~d~~~~~  141 (215)
T cd00180          65 HLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSNG---IIHRDLKPENILLDSDNGKVKLADFGLSK  141 (215)
T ss_pred             eEEEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHhhEEEeCCCCcEEEecCCceE
Confidence            5678888877322         35899999999999999999999998   999999999999998 8899999999887


Q ss_pred             eeecC
Q 043694           80 IFVKD   84 (142)
Q Consensus        80 ~~~~~   84 (142)
                      .....
T Consensus       142 ~~~~~  146 (215)
T cd00180         142 LLTSD  146 (215)
T ss_pred             EccCC
Confidence            66543

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=98.85  E-value=6.3e-09  Score=73.25  Aligned_cols=68  Identities=28%  Similarity=0.377  Sum_probs=59.1

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.|+++||+.++        ...+++..+..++.+++.|+.|+|+.+   ++|+++++.|++++.++.++++|||.+..
T Consensus        77 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~---i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~  152 (291)
T cd07870          77 TLTFVFEYMHTDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQH---ILHRDLKPQNLLISYLGELKLADFGLARA  152 (291)
T ss_pred             eEEEEEecccCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCChHHEEEcCCCcEEEeccccccc
Confidence            478889987542        234778888899999999999999998   99999999999999999999999998764

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=98.85  E-value=7.4e-09  Score=72.80  Aligned_cols=70  Identities=31%  Similarity=0.362  Sum_probs=61.4

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||++++        ...+++..+..++.|++.++.|+|+.+   ++|+++++.|++++.++..+++|||++...
T Consensus        79 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~---~~H~dl~p~nil~~~~~~~~l~dfg~~~~~  155 (288)
T cd05583          79 KLHLILDYVNGGELFTHLYQREHFTESEVRVYIAEIVLALDHLHQLG---IIYRDIKLENILLDSEGHVVLTDFGLSKEF  155 (288)
T ss_pred             EEEEEEecCCCCcHHHHHhhcCCcCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHeEECCCCCEEEEECcccccc
Confidence            467999998763        345889999999999999999999988   999999999999999999999999987664


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       156 ~  156 (288)
T cd05583         156 L  156 (288)
T ss_pred             c
Confidence            3

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=98.84  E-value=4.8e-09  Score=72.78  Aligned_cols=75  Identities=23%  Similarity=0.373  Sum_probs=61.7

Q ss_pred             hhHhhHhhhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC--CCCceEEe
Q 043694            3 MLQTVQLYLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD--EDLKSKIS   73 (142)
Q Consensus         3 ~~~~~~~~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~--~~~~~~l~   73 (142)
                      ++||.. +.++++||++.+.       .-+.+.....++.|+++|+.|+|+..   ++|||++..||++-  +...+|++
T Consensus        90 aFqt~d-~YvF~qE~aP~gdL~snv~~~GigE~~~K~v~~ql~SAi~fMHskn---lVHRdlK~eNiLif~~df~rvKlc  165 (378)
T KOG1345|consen   90 AFQTSD-AYVFVQEFAPRGDLRSNVEAAGIGEANTKKVFAQLLSAIEFMHSKN---LVHRDLKAENILIFDADFYRVKLC  165 (378)
T ss_pred             HhhcCc-eEEEeeccCccchhhhhcCcccccHHHHHHHHHHHHHHHHHhhccc---hhhcccccceEEEecCCccEEEee
Confidence            567776 5667899987643       33778888899999999999999999   99999999999984  34589999


Q ss_pred             cccceeee
Q 043694           74 DFGLARIF   81 (142)
Q Consensus        74 ~fg~~~~~   81 (142)
                      |||.++..
T Consensus       166 DFG~t~k~  173 (378)
T KOG1345|consen  166 DFGLTRKV  173 (378)
T ss_pred             eccccccc
Confidence            99987643

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=98.84  E-value=9e-09  Score=73.16  Aligned_cols=70  Identities=33%  Similarity=0.484  Sum_probs=61.8

Q ss_pred             hhheeeeeCCC--------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPI--------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||+..        ....+++.++..++.|++.|+.|+|+.+   ++|+++++.|++++.++.++++|||.+...
T Consensus        82 ~~~lv~e~~~~~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~nil~~~~~~~kL~dfg~~~~~  158 (309)
T cd07845          82 SIFLVMEYCEQDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENF---IIHRDLKVSNLLLTDKGCLKIADFGLARTY  158 (309)
T ss_pred             eEEEEEecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEECccceeeec
Confidence            46899998764        1355899999999999999999999998   999999999999999999999999988765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       159 ~  159 (309)
T cd07845         159 G  159 (309)
T ss_pred             C
Confidence            4

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.83  E-value=3.7e-08  Score=70.41  Aligned_cols=84  Identities=24%  Similarity=0.323  Sum_probs=71.0

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+|+|.||..++.        ..|+++....+..+|..++.|||+++   +|.++++..|++++..+.+|++|+|+++.-
T Consensus       325 rlffvieyv~ggdlmfhmqrqrklpeeharfys~ei~lal~flh~rg---iiyrdlkldnvlldaeghikltdygmcke~  401 (593)
T KOG0695|consen  325 RLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEICLALNFLHERG---IIYRDLKLDNVLLDAEGHIKLTDYGMCKEG  401 (593)
T ss_pred             eEEEEEEEecCcceeeehhhhhcCcHHHhhhhhHHHHHHHHHHhhcC---eeeeeccccceEEccCCceeecccchhhcC
Confidence            4788999987753        56999999999999999999999999   999999999999999999999999998764


Q ss_pred             ecCcccccccccccchh
Q 043694           82 VKDDLEANTNRIVGTQE   98 (142)
Q Consensus        82 ~~~~~~~~~~~~~g~~~   98 (142)
                      ....  ..++..+|+|.
T Consensus       402 l~~g--d~tstfcgtpn  416 (593)
T KOG0695|consen  402 LGPG--DTTSTFCGTPN  416 (593)
T ss_pred             CCCC--cccccccCCCc
Confidence            3322  23556888876

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=98.82  E-value=4.3e-08  Score=69.55  Aligned_cols=69  Identities=26%  Similarity=0.395  Sum_probs=58.7

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC---CceEEecccce
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED---LKSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~---~~~~l~~fg~~   78 (142)
                      .+|||+|-+.++.        ..|++.....+...|+.|+.|||+++   |.|+|+++.||+....   .-+|+.||.++
T Consensus       150 ~FYLVfEKm~GGplLshI~~~~~F~E~EAs~vvkdia~aLdFlH~kg---IAHRDlKPENiLC~~pn~vsPvKiCDfDLg  226 (463)
T KOG0607|consen  150 RFYLVFEKMRGGPLLSHIQKRKHFNEREASRVVKDIASALDFLHTKG---IAHRDLKPENILCESPNKVSPVKICDFDLG  226 (463)
T ss_pred             eEEEEEecccCchHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhcC---cccccCCccceeecCCCCcCceeeeccccc
Confidence            4899999987754        45999999999999999999999999   9999999999998643   35799999776


Q ss_pred             eee
Q 043694           79 RIF   81 (142)
Q Consensus        79 ~~~   81 (142)
                      ...
T Consensus       227 Sg~  229 (463)
T KOG0607|consen  227 SGI  229 (463)
T ss_pred             ccc
Confidence            543

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=98.82  E-value=1e-08  Score=72.41  Aligned_cols=70  Identities=30%  Similarity=0.432  Sum_probs=60.3

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhc-cCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQE-YSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.|+++||..+.        ...+++..+..++.+++.|+.|+|+ .+   ++|+++++.|++++.++.+++.|||.+..
T Consensus        88 ~~~~v~e~~~~~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~~---i~H~dl~p~nill~~~~~~kL~dfg~~~~  164 (296)
T cd06618          88 DVFICMELMSTCLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKEKHG---VIHRDVKPSNILLDASGNVKLCDFGISGR  164 (296)
T ss_pred             eEEEEeeccCcCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCC---EecCCCcHHHEEEcCCCCEEECccccchh
Confidence            578899987641        3468999999999999999999997 46   99999999999999999999999998765


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      +.
T Consensus       165 ~~  166 (296)
T cd06618         165 LV  166 (296)
T ss_pred             cc
Confidence            43

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=98.81  E-value=3.4e-09  Score=74.64  Aligned_cols=70  Identities=36%  Similarity=0.492  Sum_probs=61.6

Q ss_pred             hhhheeeeeCCCc-----ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694            9 LYLYLIFDVDPIR-----RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus         9 ~~~~lv~e~~~~~-----~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .-+|+|+|++..+     ...++.+++..+..|.+.|++|+|+.+   ++|||++|+|+++..+...|+.|||+++.-
T Consensus        94 ~e~y~v~e~m~~nl~~vi~~elDH~tis~i~yq~~~~ik~lhs~~---IihRdLkPsnivv~~~~~lKi~dfg~ar~e  168 (369)
T KOG0665|consen   94 QEVYLVMELMDANLCQVILMELDHETISYILYQMLCGIKHLHSAG---IIHRDLKPSNIVVNSDCTLKILDFGLARTE  168 (369)
T ss_pred             HhHHHHHHhhhhHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc---eeecccCcccceecchhheeeccchhhccc
Confidence            3478999987653     244888899999999999999999999   999999999999999999999999998753

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=98.79  E-value=1.3e-08  Score=70.72  Aligned_cols=69  Identities=28%  Similarity=0.377  Sum_probs=60.3

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+++++||.+++        ...+++.....++.+++.|+.|+|+.+   ++|+++++.|++++.++.+++.|||++...
T Consensus        80 ~~~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~---i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~  156 (264)
T cd06653          80 KLSIFVEYMPGGSIKDQLKAYGALTENVTRRYTRQILQGVSYLHSNM---IVHRDIKGANILRDSAGNVKLGDFGASKRI  156 (264)
T ss_pred             EEEEEEEeCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEcCCCCEEECcccccccc
Confidence            467888987653        245889999999999999999999998   999999999999999999999999988654

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=98.79  E-value=1.4e-08  Score=68.82  Aligned_cols=71  Identities=38%  Similarity=0.476  Sum_probs=61.5

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..++++|+.+.+.        ..+++..+..++.+++.++.++|+.+   ++|+++++.|++++.++..++.|||.+...
T Consensus        61 ~~~l~~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~  137 (244)
T smart00220       61 KLYLVMEYCDGGDLFDLLKKRGRLSEDEARFYARQILSALEYLHSNG---IIHRDLKPENILLDEDGHVKLADFGLARQL  137 (244)
T ss_pred             EEEEEEeCCCCCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHcC---eecCCcCHHHeEECCCCcEEEccccceeee
Confidence            4678888876622        22789999999999999999999998   999999999999999999999999998776


Q ss_pred             ec
Q 043694           82 VK   83 (142)
Q Consensus        82 ~~   83 (142)
                      ..
T Consensus       138 ~~  139 (244)
T smart00220      138 DP  139 (244)
T ss_pred             cc
Confidence            54

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=98.78  E-value=1.6e-08  Score=72.43  Aligned_cols=72  Identities=36%  Similarity=0.473  Sum_probs=62.7

Q ss_pred             hhheeeeeCCC-------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPI-------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~-------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ..|++++|..+       ....+++..+..++.+++.|+.|||+.+   ++|+++++.||+++.++.++++|||.+....
T Consensus        78 ~~~lv~e~~~~~l~~~l~~~~~l~~~~~~~i~~~l~~~l~~LH~~g---i~H~dlkp~nili~~~~~~~L~dfg~~~~~~  154 (330)
T cd07834          78 DVYIVTELMETDLHKVIKSPQPLTDDHIQYFLYQILRGLKYLHSAN---VIHRDLKPSNILVNSNCDLKICDFGLARGVD  154 (330)
T ss_pred             ceEEEecchhhhHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEcccCceEeec
Confidence            56889998764       2236899999999999999999999998   9999999999999999999999999887765


Q ss_pred             cC
Q 043694           83 KD   84 (142)
Q Consensus        83 ~~   84 (142)
                      ..
T Consensus       155 ~~  156 (330)
T cd07834         155 PD  156 (330)
T ss_pred             cc
Confidence            43

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=98.78  E-value=1.9e-08  Score=72.15  Aligned_cols=66  Identities=23%  Similarity=0.280  Sum_probs=57.3

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccce
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~   78 (142)
                      +.|+|+||++++.          ..+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++..++.+|+..
T Consensus        73 ~~~lv~e~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~---iiH~dlkp~Nil~~~~~~~~l~~~~~~  148 (327)
T cd08227          73 ELWVVTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMG---YVHRSVKASHILISVDGKVYLSGLRSN  148 (327)
T ss_pred             EEEEEEeccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCChhhEEEecCCcEEEcccchh
Confidence            5788999987532          34899999999999999999999998   999999999999998888888888643

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=98.76  E-value=1.8e-08  Score=76.12  Aligned_cols=74  Identities=24%  Similarity=0.356  Sum_probs=62.1

Q ss_pred             hhhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            9 LYLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      .|.|+++|-...+         ...+++.....+..||+-|+.+||+++   ++|||++-.|+.++.++..++.|||.+.
T Consensus       642 d~yyl~te~hg~gIDLFd~IE~kp~m~E~eAk~IFkQV~agi~hlh~~~---ivhrdikdenvivd~~g~~klidfgsaa  718 (772)
T KOG1152|consen  642 DYYYLETEVHGEGIDLFDFIEFKPRMDEPEAKLIFKQVVAGIKHLHDQG---IVHRDIKDENVIVDSNGFVKLIDFGSAA  718 (772)
T ss_pred             CeeEEEecCCCCCcchhhhhhccCccchHHHHHHHHHHHhccccccccC---ceecccccccEEEecCCeEEEeeccchh
Confidence            3677777753321         244889999999999999999999999   9999999999999999999999999887


Q ss_pred             eeecCc
Q 043694           80 IFVKDD   85 (142)
Q Consensus        80 ~~~~~~   85 (142)
                      +...++
T Consensus       719 ~~ksgp  724 (772)
T KOG1152|consen  719 YTKSGP  724 (772)
T ss_pred             hhcCCC
Confidence            765543

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=98.74  E-value=5e-08  Score=70.20  Aligned_cols=98  Identities=19%  Similarity=0.270  Sum_probs=72.0

Q ss_pred             hhheeeeeCC---------CcccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC-------------
Q 043694           10 YLYLIFDVDP---------IRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED-------------   67 (142)
Q Consensus        10 ~~~lv~e~~~---------~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~-------------   67 (142)
                      +.++|+|...         |+..+++..++..++.|++.++.+||+.+   ++|.|++|.||++.++             
T Consensus       165 hiCivfellG~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~k---l~HTDLKPENILfvss~~~~~~~~k~~~~  241 (415)
T KOG0671|consen  165 HICIVFELLGLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDLK---LTHTDLKPENILFVSSEYFKTYNPKKKVC  241 (415)
T ss_pred             ceEEEEeccChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhcc---eeecCCChheEEEeccceEEEeccCCccc
Confidence            4566776533         46677999999999999999999999999   9999999999998421             


Q ss_pred             -------CceEEecccceeeeecCcccccccccccchh---------hhhhhhcCCcce
Q 043694           68 -------LKSKISDFGLARIFVKDDLEANTNRIVGTQE---------SYNLWKDGKGRK  110 (142)
Q Consensus        68 -------~~~~l~~fg~~~~~~~~~~~~~~~~~~g~~~---------~~~~~~~~~~~~  110 (142)
                             ..+++.|||.+.+-.........++-..+|+         +-++|+-|-+.-
T Consensus       242 ~~r~~ks~~I~vIDFGsAtf~~e~hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~  300 (415)
T KOG0671|consen  242 FIRPLKSTAIKVIDFGSATFDHEHHSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILV  300 (415)
T ss_pred             eeccCCCcceEEEecCCcceeccCcceeeeccccCCchheeccCcCCccCceeeeeEEE
Confidence                   2368889998887665543333333333333         678888886543

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=98.71  E-value=1.5e-08  Score=73.56  Aligned_cols=119  Identities=18%  Similarity=0.199  Sum_probs=86.9

Q ss_pred             cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeeecCcccc---cc-------
Q 043694           21 RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA---NT-------   90 (142)
Q Consensus        21 ~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~~~~~~~---~~-------   90 (142)
                      +...++-.+.+..+.|++.|+.|+|..+   ++|+|+.++|+.+++.-..|++|-.+++-+-+.+++-   +.       
T Consensus       389 ~aqtvtt~qlV~masQla~am~hlh~~~---ViHkDiAaRNCvIdd~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWM  465 (563)
T KOG1024|consen  389 YAQTVTTIQLVLMASQLAMAMEHLHNHG---VIHKDIAARNCVIDDQLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWM  465 (563)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHhcC---cccchhhhhcceehhheeEEeccchhccccCcccccccCCCCCCccccc
Confidence            3455778888899999999999999999   9999999999999999999999998888765544321   01       


Q ss_pred             ------------cccccchh--hhhhhhcCC-cceeecC---------CCCCCCCHHHHHHHHHHHHhccCccCCC
Q 043694           91 ------------NRIVGTQE--SYNLWKDGK-GRKLMDP---------SLDDTHSSWKLLTCLQIALLCVQENSND  142 (142)
Q Consensus        91 ------------~~~~g~~~--~~~~~~~~~-~~~~~d~---------~~~~~~~~~~~~~~~~i~~~C~~~~p~~  142 (142)
                                  ...+.++|  .|+.+..|+ ...-+||         +.+-..+.++++++..++.-||+..|+|
T Consensus       466 slEal~n~~yssasDvWsfGVllWELmtlg~~PyaeIDPfEm~~ylkdGyRlaQP~NCPDeLf~vMacCWallpee  541 (563)
T KOG1024|consen  466 SLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDPFEMEHYLKDGYRLAQPFNCPDELFTVMACCWALLPEE  541 (563)
T ss_pred             CHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCHHHHHHHHhccceecCCCCCcHHHHHHHHHHHhcCccc
Confidence                        11222222  345555554 2344453         2233578888999999999999999985

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=98.71  E-value=4.4e-08  Score=74.28  Aligned_cols=54  Identities=30%  Similarity=0.453  Sum_probs=49.1

Q ss_pred             cCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           25 LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        25 l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +++..+..++.+++.++.|+|+.+   ++|+|+++.||+++.+...++.|||++...
T Consensus       306 ~~~~~~~~i~~ql~~aL~~lH~~~---ivHrDLKp~NILl~~~~~~kL~DFGla~~~  359 (507)
T PLN03224        306 RDINVIKGVMRQVLTGLRKLHRIG---IVHRDIKPENLLVTVDGQVKIIDFGAAVDM  359 (507)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC---eecCCCchHhEEECCCCcEEEEeCcCcccc
Confidence            467788889999999999999998   999999999999999999999999987643

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=98.70  E-value=2.6e-08  Score=66.73  Aligned_cols=61  Identities=31%  Similarity=0.410  Sum_probs=53.8

Q ss_pred             ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeeecC
Q 043694           22 RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD   84 (142)
Q Consensus        22 ~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~~~   84 (142)
                      ....++.-.-+++..+..|+.|||++-  .++|||++++||+++..+..|++|||++..+..+
T Consensus       142 g~~ipE~vlGkIa~Svv~al~~L~~kL--~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dS  202 (282)
T KOG0984|consen  142 GGTIPEDVLGKIAVSVVHALEFLHSKL--SVIHRDVKPSNILINYDGQVKICDFGISGYLVDS  202 (282)
T ss_pred             CCcCchHHhhHhHHHHHHHHHHHHHHh--hhhhccCCcceEEEccCCcEEEcccccceeehhh
Confidence            455778888899999999999999875  3899999999999999999999999999887644

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=98.66  E-value=3.5e-08  Score=71.32  Aligned_cols=69  Identities=33%  Similarity=0.545  Sum_probs=59.4

Q ss_pred             hhheeeeeCCCc------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC-CCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD-EDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~-~~~~~~l~~fg~~~~~   81 (142)
                      +.|+++||.++.      ...+++..+..++.|++.|+.|||+.+   ++|+++++.|++++ .+..+++.|||.+..+
T Consensus        90 ~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~g---ivH~dikp~Nili~~~~~~~kl~dfg~~~~~  165 (342)
T cd07854          90 SVYIVQEYMETDLANVLEQGPLSEEHARLFMYQLLRGLKYIHSAN---VLHRDLKPANVFINTEDLVLKIGDFGLARIV  165 (342)
T ss_pred             eEEEEeecccccHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEEcCCCceEEECCcccceec
Confidence            468999998652      245899999999999999999999998   99999999999997 4567899999988754

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=98.59  E-value=7.4e-08  Score=73.79  Aligned_cols=84  Identities=25%  Similarity=0.328  Sum_probs=70.0

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+++.||||.+++        .+|++.++...+++.++|+.|+|+.+   =+||+++..||++...+..++.|||.+..+
T Consensus        86 klwicMEycgggslQdiy~~TgplselqiayvcRetl~gl~ylhs~g---k~hRdiKGanilltd~gDvklaDfgvsaqi  162 (829)
T KOG0576|consen   86 KLWICMEYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLKYLHSQG---KIHRDIKGANILLTDEGDVKLADFGVSAQI  162 (829)
T ss_pred             CcEEEEEecCCCcccceeeecccchhHHHHHHHhhhhccchhhhcCC---cccccccccceeecccCceeecccCchhhh
Confidence            4778899998754        67999999999999999999999998   789999999999999999999999998776


Q ss_pred             ecCcccccccccccchh
Q 043694           82 VKDDLEANTNRIVGTQE   98 (142)
Q Consensus        82 ~~~~~~~~~~~~~g~~~   98 (142)
                      ......  .....|++.
T Consensus       163 tati~K--rksfiGtpy  177 (829)
T KOG0576|consen  163 TATIAK--RKSFIGTPY  177 (829)
T ss_pred             hhhhhh--hhcccCCcc
Confidence            543321  233566655

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=98.59  E-value=9.1e-08  Score=62.59  Aligned_cols=51  Identities=22%  Similarity=0.071  Sum_probs=44.2

Q ss_pred             ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeeec
Q 043694           22 RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVK   83 (142)
Q Consensus        22 ~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~~   83 (142)
                      ...+++.++..++.|++.|+.|+|+.+         ++.||+++.++..++  ||.+.....
T Consensus        11 ~~~l~~~~~~~i~~qi~~~L~~lH~~~---------kp~Nil~~~~~~~~~--fG~~~~~~~   61 (176)
T smart00750       11 GRPLNEEEIWAVCLQCLRALRELHRQA---------KSGNILLTWDGLLKL--DGSVAFKTP   61 (176)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhcC---------CcccEeEcCccceee--ccceEeecc
Confidence            456999999999999999999999875         889999998888888  998876543

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>PRK12274 serine/threonine protein kinase; Provisional

Probab=98.57  E-value=1.6e-07  Score=63.54  Aligned_cols=68  Identities=24%  Similarity=0.114  Sum_probs=53.6

Q ss_pred             hheeeeeCCCcccc--cCHHHHHHHHHHHHHHhhhhhccCCCceEeccc-CCCcEEeCCCCceEEecccceeeee
Q 043694           11 LYLIFDVDPIRRFI--LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDL-KASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        11 ~~lv~e~~~~~~~~--l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l-~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .|++++|..+....  ... ....+..++..++.++|..+   ++|+|+ ++.||+++.++.+++.|||++....
T Consensus        73 ~~lvmeyI~G~~L~~~~~~-~~~~~~~qi~~~L~~lH~~G---IvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~  143 (218)
T PRK12274         73 RHLDRSYLAGAAMYQRPPR-GDLAYFRAARRLLQQLHRCG---VAHNDLAKEANWLVQEDGSPAVIDFQLAVRGN  143 (218)
T ss_pred             EEEEEeeecCccHHhhhhh-hhHHHHHHHHHHHHHHHHCc---CccCCCCCcceEEEcCCCCEEEEECCCceecC
Confidence            48889997654321  111 22457788999999999999   999999 6899999988899999999987544

>smart00090 RIO RIO-like kinase

Probab=98.54  E-value=2.6e-07  Score=63.78  Aligned_cols=69  Identities=19%  Similarity=0.127  Sum_probs=55.9

Q ss_pred             hheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           11 LYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        11 ~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .|+|+||..+..        ..+...+...++.+++.++.++|..+  .++|+|+++.||+++ ++..++.|||.+....
T Consensus       123 ~~lV~E~~~g~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~g--~iiH~Dikp~NIli~-~~~i~LiDFg~a~~~~  199 (237)
T smart00090      123 NVLVMEFIGGDGLPAPRLKDVEPEEEEEFELYDDILEEMRKLYKEG--ELVHGDLSEYNILVH-DGKVVIIDVSQSVELD  199 (237)
T ss_pred             ceEEEEEecCCcccccccccCCcchHHHHHHHHHHHHHHHHHHhcC--CEEeCCCChhhEEEE-CCCEEEEEChhhhccC
Confidence            579999977632        22445556788999999999999876  389999999999998 7789999999877544

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=98.54  E-value=1.7e-07  Score=62.80  Aligned_cols=71  Identities=18%  Similarity=0.157  Sum_probs=56.6

Q ss_pred             hhheeeeeCCCccc-ccCH-HHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeeec
Q 043694           10 YLYLIFDVDPIRRF-ILDW-KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVK   83 (142)
Q Consensus        10 ~~~lv~e~~~~~~~-~l~~-~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~~   83 (142)
                      ..++++||+++... .+.. .....++.+++.++.++|..+   ++|+|+++.|++++.+..+++.|||.+.....
T Consensus       105 ~~~lv~e~~~g~~L~~~~~~~~~~~~~~~i~~~l~~lh~~g---i~H~Dl~p~Nill~~~~~~~liDfg~~~~~~~  177 (198)
T cd05144         105 RHAVVMEYIDGVELYRVRVLEDPEEVLDEILEEIVKAYKHG---IIHGDLSEFNILVDDDEKIYIIDWPQMVSTDH  177 (198)
T ss_pred             CceEEEEEeCCcchhhccccccHHHHHHHHHHHHHHHHHCC---CCcCCCCcccEEEcCCCcEEEEECCccccCCC
Confidence            45789999876431 1211 345567889999999999988   99999999999999999999999998865544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=98.50  E-value=1.3e-07  Score=72.37  Aligned_cols=69  Identities=16%  Similarity=0.213  Sum_probs=55.7

Q ss_pred             hhheeeeeCCCcccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ..++|+||++++...=-+.....++.+++.++.++|+.+   ++|+|+++.|+++ .+...++.|||+++...
T Consensus       410 ~~~lv~E~~~g~~L~~~l~~~~~~~~~i~~~L~~lH~~g---iiHrDlkp~NILl-~~~~~~liDFGla~~~~  478 (535)
T PRK09605        410 EKTIVMEYIGGKDLKDVLEGNPELVRKVGEIVAKLHKAG---IVHGDLTTSNFIV-RDDRLYLIDFGLGKYSD  478 (535)
T ss_pred             CCEEEEEecCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC---CccCCCChHHEEE-ECCcEEEEeCcccccCC
Confidence            467899998765432112245678899999999999998   9999999999999 57789999999987643

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=98.46  E-value=1.3e-07  Score=65.67  Aligned_cols=59  Identities=36%  Similarity=0.465  Sum_probs=49.2

Q ss_pred             ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           22 RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        22 ~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ...+++.-.-.+....+.|+.||...-  .+||||++|+||+++..+.+|+.|||++..+-
T Consensus       161 ~~~ipE~Ilg~ItvatV~AL~yLK~~l--kiIHRDvKPSNILldr~G~vKLCDFGIcGqLv  219 (361)
T KOG1006|consen  161 KSRIPENILGHITVATVDALDYLKEEL--KIIHRDVKPSNILLDRHGDVKLCDFGICGQLV  219 (361)
T ss_pred             hccCcHhhhhheeeeehhHHHHHHHHh--hhhhccCChhheEEecCCCEeeecccchHhHH
Confidence            344777777777788889999996543  49999999999999999999999999887654

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=98.40  E-value=5.2e-07  Score=64.94  Aligned_cols=68  Identities=24%  Similarity=0.306  Sum_probs=58.0

Q ss_pred             hhhheeeeeCCC---------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC-----CceEEec
Q 043694            9 LYLYLIFDVDPI---------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED-----LKSKISD   74 (142)
Q Consensus         9 ~~~~lv~e~~~~---------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~-----~~~~l~~   74 (142)
                      .|.|+||+....         ....|+..+...++.|+..++.++|+.+   ++|||+++.|+.++..     ..+.+.|
T Consensus        94 ~~~~iVM~l~G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~G---~iHRDiKp~N~~~g~~~~~~~~~~~llD  170 (322)
T KOG1164|consen   94 DFNFIVMSLLGPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSKG---FIHRDIKPENFVVGQSSRSEVRTLYLLD  170 (322)
T ss_pred             ceeEEEEeccCccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhcC---cccCCcCHHHeeecCCCCcccceEEEEe
Confidence            467888876322         2467999999999999999999999999   9999999999999854     4588999


Q ss_pred             cccee
Q 043694           75 FGLAR   79 (142)
Q Consensus        75 fg~~~   79 (142)
                      ||+++
T Consensus       171 fGlar  175 (322)
T KOG1164|consen  171 FGLAR  175 (322)
T ss_pred             cCCCc
Confidence            99998

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=98.34  E-value=7.8e-07  Score=59.44  Aligned_cols=66  Identities=21%  Similarity=0.300  Sum_probs=52.0

Q ss_pred             hheeeeeCCCcccc--cCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           11 LYLIFDVDPIRRFI--LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        11 ~~lv~e~~~~~~~~--l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .++++||+++....  +.... ..++.+++.++.++|..+   ++|+|+++.|++++ +..+++.|||.+...
T Consensus        72 ~~lv~e~~~g~~l~~~~~~~~-~~~~~~i~~~l~~lH~~g---i~H~Dl~~~Nil~~-~~~~~liDfg~a~~~  139 (199)
T TIGR03724        72 KTIVMEYIEGKPLKDVIEEGN-DELLREIGRLVGKLHKAG---IVHGDLTTSNIIVR-DDKLYLIDFGLGKYS  139 (199)
T ss_pred             CEEEEEEECCccHHHHHhhcH-HHHHHHHHHHHHHHHHCC---eecCCCCcceEEEE-CCcEEEEECCCCcCC
Confidence            47899998764321  11111 167899999999999998   99999999999998 788999999987654

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK14879 serine/threonine protein kinase; Provisional

Probab=98.34  E-value=1.2e-06  Score=59.10  Aligned_cols=67  Identities=22%  Similarity=0.265  Sum_probs=53.7

Q ss_pred             hhheeeeeCCCcccc-----cCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRRFI-----LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~~~-----l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..++++||.++....     ..+ .+..++.+++.++.++|..+   ++|+|+++.|++++ +...++.|||.+...
T Consensus        73 ~~~lv~e~~~G~~L~~~~~~~~~-~~~~i~~~i~~~l~~lH~~~---i~H~Dl~p~Nil~~-~~~~~liDf~~a~~~  144 (211)
T PRK14879         73 NFIIVMEYIEGEPLKDLINSNGM-EELELSREIGRLVGKLHSAG---IIHGDLTTSNMILS-GGKIYLIDFGLAEFS  144 (211)
T ss_pred             CCEEEEEEeCCcCHHHHHHhccH-HHHHHHHHHHHHHHHHHhCC---cccCCCCcccEEEE-CCCEEEEECCcccCC
Confidence            357889998764321     122 55688899999999999998   99999999999998 778899999987653

>cd05119 RIO RIO kinase family, catalytic domain

Probab=98.34  E-value=9.2e-07  Score=58.48  Aligned_cols=69  Identities=22%  Similarity=0.144  Sum_probs=55.3

Q ss_pred             hheeeeeCCCcccc------cCH-HHHHHHHHHHHHHhhhhhc-cCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           11 LYLIFDVDPIRRFI------LDW-KTCIHIIQGITQGLLYLQE-YSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        11 ~~lv~e~~~~~~~~------l~~-~~~~~~~~~i~~~l~~lh~-~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .++++||.+++...      ... .....++.+++.++.++|. .+   ++|+|+++.|++++ ++..++.|||.+....
T Consensus        90 ~~lv~e~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~lh~~~~---ivH~Dl~p~Nili~-~~~~~liDfg~a~~~~  165 (187)
T cd05119          90 HVLVMEFIGGDGIPAPRLKDVRLLEDPEELYDQILELMRKLYREAG---LVHGDLSEYNILVD-DGKVYIIDVPQAVEID  165 (187)
T ss_pred             CEEEEEEeCCCCccChhhhhhhhcccHHHHHHHHHHHHHHHhhccC---cCcCCCChhhEEEE-CCcEEEEECccccccc
Confidence            47899998763211      111 5567789999999999999 77   99999999999999 8889999999987654


Q ss_pred             c
Q 043694           83 K   83 (142)
Q Consensus        83 ~   83 (142)
                      .
T Consensus       166 ~  166 (187)
T cd05119         166 H  166 (187)
T ss_pred             C
Confidence            4

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=98.33  E-value=2.1e-06  Score=57.70  Aligned_cols=72  Identities=35%  Similarity=0.475  Sum_probs=61.5

Q ss_pred             hhheeeeeCCCcc--------cc-cCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR--------FI-LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~-l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..++++|+...+.        .. +++..+..++.+++.++.++|+.+   +.|+++++.|++++.+...++.|||.+..
T Consensus        71 ~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~di~~~ni~v~~~~~~~l~d~g~~~~  147 (225)
T smart00221       71 PLYLVMEYCEGGDLFDYLRKKGGKLSEEEARFYLRQILEALEYLHSLG---IVHRDLKPENILLGMDGLVKLADFGLARF  147 (225)
T ss_pred             ceEEEEeccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEeeCceeeE
Confidence            4677888876522        23 888999999999999999999998   99999999999999999999999998887


Q ss_pred             eecC
Q 043694           81 FVKD   84 (142)
Q Consensus        81 ~~~~   84 (142)
                      ....
T Consensus       148 ~~~~  151 (225)
T smart00221      148 IHRD  151 (225)
T ss_pred             ecCc
Confidence            6543

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=98.31  E-value=1.6e-06  Score=59.93  Aligned_cols=64  Identities=30%  Similarity=0.259  Sum_probs=50.9

Q ss_pred             heeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           12 YLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        12 ~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ++|+|+.++..        ..++..    .+.+++.++.++|..+   ++|+|+++.||+++.++.+++.|||.+....
T Consensus       122 ~lV~e~l~G~~~L~~~l~~~~l~~~----~~~~i~~~l~~lH~~G---I~HrDlkp~NILv~~~~~v~LIDfg~~~~~~  193 (239)
T PRK01723        122 DILIERIEGARDLVALLQEAPLSEE----QWQAIGQLIARFHDAG---VYHADLNAHNILLDPDGKFWLIDFDRGELRT  193 (239)
T ss_pred             eEEEEecCCCCCHHHHHhcCCCCHH----HHHHHHHHHHHHHHCC---CCCCCCCchhEEEcCCCCEEEEECCCcccCC
Confidence            48899887522        122332    3568899999999999   9999999999999988889999999877643

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=98.27  E-value=1e-06  Score=60.43  Aligned_cols=65  Identities=11%  Similarity=0.129  Sum_probs=51.8

Q ss_pred             hhheeeeeCCCccc----ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIRRF----ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~~~----~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ..+++|||.++...    .++    .....++..++..+|..+   ++|+|++|.|++++.++ +++.|||......
T Consensus       117 ~~~lvmEyi~G~tL~~~~~~~----~~~~~~i~~~l~~lH~~g---i~H~Dikp~Nili~~~g-i~liDfg~~~~~~  185 (232)
T PRK10359        117 TYIMLIEYIEGVELNDMPEIS----EDVKAKIKASIESLHQHG---MVSGDPHKGNFIVSKNG-LRIIDLSGKRCTA  185 (232)
T ss_pred             CeEEEEEEECCccHHHhhhcc----HHHHHHHHHHHHHHHHcC---CccCCCChHHEEEeCCC-EEEEECCCccccc
Confidence            47889999887532    111    234568899999999999   99999999999998877 9999999876553

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=98.26  E-value=5e-06  Score=52.36  Aligned_cols=71  Identities=23%  Similarity=0.285  Sum_probs=57.9

Q ss_pred             hhheeeeeCCCccc-ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRRF-ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~~-~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+++||.++... .++......++.+++.++..+|......++|+|+++.|++++.....++.||+.+..
T Consensus        67 ~~~~v~e~~~g~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~  138 (155)
T cd05120          67 WSYLLMEWIEGETLDEVSEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGY  138 (155)
T ss_pred             ccEEEEEecCCeecccCCHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccC
Confidence            47889999765432 235677778899999999999986545599999999999999888899999998764

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=98.24  E-value=2.1e-06  Score=67.32  Aligned_cols=52  Identities=40%  Similarity=0.726  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC---C--CceEEecccceeeeecCc
Q 043694           31 IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE---D--LKSKISDFGLARIFVKDD   85 (142)
Q Consensus        31 ~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~---~--~~~~l~~fg~~~~~~~~~   85 (142)
                      +.+..|+++|+.+||+-+   ++|||++|.||++..   +  ..++++|||+++.+..+.
T Consensus       609 ~~~l~q~~~GlaHLHsl~---iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~  665 (903)
T KOG1027|consen  609 ISVLSQIASGLAHLHSLK---IVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGK  665 (903)
T ss_pred             HHHHHHHHHHHHHHHhcc---cccccCCCceEEEEccCCCcceeEEecccccccccCCCc
Confidence            567899999999999988   999999999999975   2  468999999999887654

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=98.17  E-value=2.6e-06  Score=64.21  Aligned_cols=125  Identities=22%  Similarity=0.294  Sum_probs=83.4

Q ss_pred             hhhheeeeeCCC----------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC-CCceEEecccc
Q 043694            9 LYLYLIFDVDPI----------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE-DLKSKISDFGL   77 (142)
Q Consensus         9 ~~~~lv~e~~~~----------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~-~~~~~l~~fg~   77 (142)
                      .+++||+|-..-          ...-|..+.+..++-|+..||..|-..+   ++|.|++|.||++.. ....|++|||.
T Consensus       507 nHLClVFE~LslNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c~---vlHaDIKPDNiLVNE~k~iLKLCDfGS  583 (752)
T KOG0670|consen  507 NHLCLVFEPLSLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCG---VLHADIKPDNILVNESKNILKLCDFGS  583 (752)
T ss_pred             ceeEEEehhhhchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhcC---eeecccCccceEeccCcceeeeccCcc
Confidence            368999986442          2233778888999999999999998877   999999999999974 56789999998


Q ss_pred             eeeeecCcccc--------cccccccchh--hhhhhhcCCcceeecC-CC--CCCCCHHHHHHHHHHHHhccCccC
Q 043694           78 ARIFVKDDLEA--------NTNRIVGTQE--SYNLWKDGKGRKLMDP-SL--DDTHSSWKLLTCLQIALLCVQENS  140 (142)
Q Consensus        78 ~~~~~~~~~~~--------~~~~~~g~~~--~~~~~~~~~~~~~~d~-~~--~~~~~~~~~~~~~~i~~~C~~~~p  140 (142)
                      +..........        .+....|-++  +++.|+.|...+-+.. .+  .|..+.    .|+.+++-|--..|
T Consensus       584 A~~~~eneitPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~TNN----~MLrl~me~KGk~p  655 (752)
T KOG0670|consen  584 ASFASENEITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRTNN----QMLRLFMELKGKFP  655 (752)
T ss_pred             ccccccccccHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCCCcH----HHHHHHHHhcCCCc
Confidence            87765432111        1112223322  7889998875544443 22  234443    45555555544444

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=98.11  E-value=5.9e-06  Score=56.90  Aligned_cols=72  Identities=25%  Similarity=0.345  Sum_probs=58.9

Q ss_pred             hhhheeeeeCCC--------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC---CceEEecccc
Q 043694            9 LYLYLIFDVDPI--------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED---LKSKISDFGL   77 (142)
Q Consensus         9 ~~~~lv~e~~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~---~~~~l~~fg~   77 (142)
                      .|..+|||...-        -+..|+.++++-++-|+...+.|+|..+   ++|+|++|.|.+.+-+   ....+.|||+
T Consensus        84 ~ynvlVMdLLGPsLEdLfnfC~R~ftmkTvLMLaDQml~RiEyvH~r~---fiHRDIKPdNFLMGlgrh~~kl~LIDFGL  160 (341)
T KOG1163|consen   84 DYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMLSRIEYVHLRN---FIHRDIKPDNFLMGLGRHCNKLYLIDFGL  160 (341)
T ss_pred             ccceeeeeccCccHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHhhc---cccccCCccceeeccccccceEEEEeccc
Confidence            466788886432        2355999999999999999999999999   9999999999998754   3567999999


Q ss_pred             eeeeec
Q 043694           78 ARIFVK   83 (142)
Q Consensus        78 ~~~~~~   83 (142)
                      ++.+.+
T Consensus       161 aKky~d  166 (341)
T KOG1163|consen  161 AKKYRD  166 (341)
T ss_pred             hhhhcc
Confidence            987654

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.08  E-value=1e-05  Score=62.86  Aligned_cols=64  Identities=30%  Similarity=0.422  Sum_probs=55.9

Q ss_pred             eeeCCC-------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           15 FDVDPI-------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        15 ~e~~~~-------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      |||++.       ....++...+-.+..|+..|+.|+|+.+   +.|+++++.|+++..++..++.|||.+...
T Consensus       400 mE~~~~Dlf~~~~~~~~~~~~e~~c~fKqL~~Gv~y~h~~G---iahrdlK~enll~~~~g~lki~Dfg~~~vf  470 (601)
T KOG0590|consen  400 MEYCPYDLFSLVMSNGKLTPLEADCFFKQLLRGVKYLHSMG---LAHRDLKLENLLVTENGILKIIDFGAASVF  470 (601)
T ss_pred             hhcccHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhcC---ceeccCccccEEEecCCceEEeecCcceee
Confidence            788766       1235788888889999999999999999   999999999999999999999999987654

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=98.08  E-value=6.3e-06  Score=59.09  Aligned_cols=61  Identities=25%  Similarity=0.359  Sum_probs=54.0

Q ss_pred             ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC-----CceEEecccceeeeecCc
Q 043694           22 RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED-----LKSKISDFGLARIFVKDD   85 (142)
Q Consensus        22 ~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~-----~~~~l~~fg~~~~~~~~~   85 (142)
                      ...|+.+++.-++.|+..-++++|+..   +|.||++|.|.+++.-     ..+.+.|||+++.+.+..
T Consensus       118 gR~FSvKTV~miA~Qmi~rie~vH~k~---LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~  183 (449)
T KOG1165|consen  118 GRRFSVKTVAMIAKQMITRIEYVHEKD---LIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPK  183 (449)
T ss_pred             cCcccHHhHHHHHHHHHHHHHHHHhcc---eeecccCccceeecCCCCCCCceEEEEeccchhhhcCcc
Confidence            466999999999999999999999999   9999999999999742     467899999999987654

>PRK10345 hypothetical protein; Provisional

Probab=98.02  E-value=1.7e-05  Score=53.83  Aligned_cols=51  Identities=20%  Similarity=0.395  Sum_probs=39.2

Q ss_pred             cCHHHHHHHHHHHHHHh-hhhhccCCCceEecccCCCcEEeCC----CCceEEec-ccceee
Q 043694           25 LDWKTCIHIIQGITQGL-LYLQEYSKLIVIHQDLKASNILLDE----DLKSKISD-FGLARI   80 (142)
Q Consensus        25 l~~~~~~~~~~~i~~~l-~~lh~~~~~~i~h~~l~~~nil~~~----~~~~~l~~-fg~~~~   80 (142)
                      +++.  ..++.+++.++ .|||+..   ++|+|+++.||+++.    +..+++.| ||....
T Consensus       103 ~~e~--~~~~~~~L~~l~~yLh~~~---IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~~~~  159 (210)
T PRK10345        103 YEED--VAQLRQLLKKLKRYLLDNR---IVTMELKPQNILCQRISESEVIPVVCDNIGESTF  159 (210)
T ss_pred             ccHh--HHHHHHHHHHHHHHHHHCC---EeecCCCHHHEEEeccCCCCCcEEEEECCCCcce
Confidence            4444  34577888777 8999999   999999999999974    23789999 555444

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=97.99  E-value=3e-05  Score=52.12  Aligned_cols=69  Identities=16%  Similarity=0.074  Sum_probs=52.9

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhh-hccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYL-QEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~l-h~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..++||||..+..        ..++.++...+..++..++..+ |..+   ++|+|+++.||++.. +.+.+.|||.+-.
T Consensus        98 ~~~lvME~Ig~~~~~~~~Lkd~~~~~~~~~~i~~~i~~~l~~l~H~~g---lVHGDLs~~NIL~~~-~~v~iIDF~qav~  173 (197)
T cd05146          98 KHVLVMSFIGDDQVPAPKLKDAKLNDEEMKNAYYQVLSMMKQLYKECN---LVHADLSEYNMLWHD-GKVWFIDVSQSVE  173 (197)
T ss_pred             CCEEEEEEcCCCCccchhhhccccCHHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEEC-CcEEEEECCCcee
Confidence            3678999976531        2344455667778999999888 7888   999999999999964 5688999997765


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       174 ~~  175 (197)
T cd05146         174 PT  175 (197)
T ss_pred             CC
Confidence            54

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.98  E-value=8.3e-06  Score=60.88  Aligned_cols=56  Identities=29%  Similarity=0.332  Sum_probs=46.4

Q ss_pred             hhheeeeeCCC---------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC
Q 043694           10 YLYLIFDVDPI---------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED   67 (142)
Q Consensus        10 ~~~lv~e~~~~---------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~   67 (142)
                      +.++|+|+...         .-.-++...+..|+.|++.||.|||..+  .+||.|+++.|+++..+
T Consensus       160 HVCMVfEvLGdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ec--gIIHTDlKPENvLl~~~  224 (590)
T KOG1290|consen  160 HVCMVFEVLGDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHREC--GIIHTDLKPENVLLCST  224 (590)
T ss_pred             EEEEEehhhhhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhc--CccccCCCcceeeeecc
Confidence            47888888543         2234888899999999999999999887  59999999999999654

>cd05151 ChoK Choline Kinase (ChoK)

Probab=97.89  E-value=2.8e-05  Score=50.43  Aligned_cols=69  Identities=23%  Similarity=0.197  Sum_probs=50.3

Q ss_pred             hheeeeeCCCcccccCHHHHHHHHHHHHHHhhhhhccC--CCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           11 LYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYS--KLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        11 ~~lv~e~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~--~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      -++|+|+.++....-..........+++.++..+|...  ...++|+|+++.|++++ +..+++.||+.+..
T Consensus        66 ~~lv~e~i~G~~l~~~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~  136 (170)
T cd05151          66 GVLITEFIEGSELLTEDFSDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGM  136 (170)
T ss_pred             CeEEEEecCCCccccccccCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccC
Confidence            47899998775432111122345678899999999876  23469999999999998 56788999987653

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=97.84  E-value=3.1e-05  Score=56.65  Aligned_cols=66  Identities=23%  Similarity=0.388  Sum_probs=54.4

Q ss_pred             hheeeeeCCCcc-----cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC-CCceEEeccccee
Q 043694           11 LYLIFDVDPIRR-----FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE-DLKSKISDFGLAR   79 (142)
Q Consensus        11 ~~lv~e~~~~~~-----~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~-~~~~~l~~fg~~~   79 (142)
                      ...|++|.+...     ..++...+..++.....|+.++|..+   |+|||+++.|+++.. .+...+.|||++.
T Consensus       110 v~ivlp~~~H~~f~~l~~~l~~~~i~~Yl~~ll~Al~~~h~~G---IvHRDiKpsNFL~n~~t~rg~LvDFgLA~  181 (418)
T KOG1167|consen  110 VAIVLPYFEHDRFRDLYRSLSLAEIRWYLRNLLKALAHLHKNG---IVHRDIKPSNFLYNRRTQRGVLVDFGLAQ  181 (418)
T ss_pred             eEEEecccCccCHHHHHhcCCHHHHHHHHHHHHHHhhhhhccC---ccccCCCccccccccccCCceEEechhHH
Confidence            456667655432     34788888999999999999999999   999999999999974 4677899999876

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=97.80  E-value=5.1e-05  Score=52.97  Aligned_cols=70  Identities=36%  Similarity=0.522  Sum_probs=58.3

Q ss_pred             hheeeeeCCCcc-----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC-ceEEecccce
Q 043694           11 LYLIFDVDPIRR-----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL-KSKISDFGLA   78 (142)
Q Consensus        11 ~~lv~e~~~~~~-----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~-~~~l~~fg~~   78 (142)
                      .++++++..++.           ..++......+..+++.++.++|..+   ++|+++++.|++++... ..++.|||.+
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~~---~~hrd~kp~nil~~~~~~~~~l~dfg~~  149 (384)
T COG0515          73 LYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKG---IIHRDIKPENILLDRDGRVVKLIDFGLA  149 (384)
T ss_pred             EEEEEecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHeeecCCCCeEEEeccCcc
Confidence            466677655422           15888889999999999999999999   99999999999999877 7999999998


Q ss_pred             eeeec
Q 043694           79 RIFVK   83 (142)
Q Consensus        79 ~~~~~   83 (142)
                      +.+..
T Consensus       150 ~~~~~  154 (384)
T COG0515         150 KLLPD  154 (384)
T ss_pred             eecCC
Confidence            75543

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=97.76  E-value=3.7e-05  Score=57.99  Aligned_cols=69  Identities=32%  Similarity=0.521  Sum_probs=56.6

Q ss_pred             hheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           11 LYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        11 ~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+.|.+||+.+         ...++|.-...+...++.|+.|+|...  ...|+.+++.|++.+.....|+++||+....
T Consensus        22 ~~~i~~~c~rGsl~D~i~~~~~~~d~~F~~s~~rdi~~Gl~ylh~s~--i~~hg~l~s~nClvd~~w~lklt~~Gl~~~~   99 (484)
T KOG1023|consen   22 MIVIWEYCSRGSLLDILSNEDIKLDYFFILSFIRDISKGLAYLHNSP--IGYHGALKSSNCLVDSRWVLKLTDFGLNSLL   99 (484)
T ss_pred             eEEEEeeecCccHHhHHhccccCccHHHHHHHHHHHHHHHHHHhcCc--ceeeeeeccccceeeeeEEEEechhhhcccc
Confidence            34566666543         344788888888999999999999865  2489999999999999999999999987766

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=97.72  E-value=6.8e-05  Score=55.26  Aligned_cols=66  Identities=29%  Similarity=0.422  Sum_probs=49.2

Q ss_pred             hheeeeeCCC------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC--CCC--ceEEeccccee
Q 043694           11 LYLIFDVDPI------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD--EDL--KSKISDFGLAR   79 (142)
Q Consensus        11 ~~lv~e~~~~------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~--~~~--~~~l~~fg~~~   79 (142)
                      +|+||....-      .....+.....-++.|.+.|+.|||..+   +.|+|+++.||++.  ++.  ...++|||++.
T Consensus       318 lylvMkrY~~tLr~yl~~~~~s~r~~~~~laQlLEav~hL~~hg---vAhRDlKSDNiL~ElddD~~P~LVvaDFGCcL  393 (598)
T KOG4158|consen  318 LYLVMKRYRQTLREYLWTRHRSYRTGRVILAQLLEAVTHLHKHG---VAHRDLKSDNILLELDDDEIPQLVVADFGCCL  393 (598)
T ss_pred             EEEehhcchhhHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcc---chhhcccccceEEEecCCCCcEEEEcccceee
Confidence            5666654321      1233566667778899999999999999   99999999999984  332  46788999764

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=97.71  E-value=7.3e-05  Score=60.55  Aligned_cols=68  Identities=21%  Similarity=0.244  Sum_probs=57.2

Q ss_pred             hheeeeeCC--------CcccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC-------CCceEEecc
Q 043694           11 LYLIFDVDP--------IRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE-------DLKSKISDF   75 (142)
Q Consensus        11 ~~lv~e~~~--------~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~-------~~~~~l~~f   75 (142)
                      .++|+||.+        |+...++|.-+..+..+++..+.++|..+   |||+|+++.|.++..       +..+++.||
T Consensus       769 S~lv~ey~~~Gtlld~~N~~~~m~e~lv~~~~~qml~ive~lH~~~---IIHgDiKPDNfll~~~~~~~~~~~~l~lIDf  845 (974)
T KOG1166|consen  769 SVLVSEYSPYGTLLDLINTNKVMDEYLVMFFSCQMLRIVEHLHAMG---IIHGDIKPDNFLLRREICADSDSKGLYLIDF  845 (974)
T ss_pred             ceeeeeccccccHHHhhccCCCCCchhhhHHHHHHHHHHHHHHhcc---eecccCCcceeEeecccCCCCcccceEEEec
Confidence            678888843        35577999999999999999999999999   999999999999842       357899999


Q ss_pred             cceeee
Q 043694           76 GLARIF   81 (142)
Q Consensus        76 g~~~~~   81 (142)
                      |.+.-+
T Consensus       846 G~siDm  851 (974)
T KOG1166|consen  846 GRSIDM  851 (974)
T ss_pred             ccceee
Confidence            987543

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.69  E-value=8.1e-05  Score=49.44  Aligned_cols=67  Identities=18%  Similarity=0.203  Sum_probs=48.8

Q ss_pred             heeeeeCCCcccc-cCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           12 YLIFDVDPIRRFI-LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        12 ~lv~e~~~~~~~~-l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .++|||.++.... .-+.....++..+-.-+.-||..+   ++|+|+.++|+.+..+. ..+.|||++.+-.
T Consensus        75 ~I~me~I~G~~lkd~l~~~~~~~~r~vG~~vg~lH~~g---ivHGDLTtsNiIl~~~~-i~~IDfGLg~~s~  142 (204)
T COG3642          75 LIVMEYIEGELLKDALEEARPDLLREVGRLVGKLHKAG---IVHGDLTTSNIILSGGR-IYFIDFGLGEFSD  142 (204)
T ss_pred             EEEEEEeCChhHHHHHHhcchHHHHHHHHHHHHHHhcC---eecCCCccceEEEeCCc-EEEEECCcccccc
Confidence            4677876654322 222224566777777778899999   99999999999997655 7789999987544

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=97.58  E-value=0.00024  Score=50.09  Aligned_cols=68  Identities=19%  Similarity=0.139  Sum_probs=52.9

Q ss_pred             hhheeeeeCCCcc-----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC-------CCceE
Q 043694           10 YLYLIFDVDPIRR-----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE-------DLKSK   71 (142)
Q Consensus        10 ~~~lv~e~~~~~~-----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~-------~~~~~   71 (142)
                      ..|+|+|+.++..           ...+...+..++.+++..+.-+|..+   ++|+|+.+.||+++.       +..+.
T Consensus       109 ~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH~~G---i~HgDL~~~NiLl~~~~~~~~~~~~~~  185 (268)
T PRK15123        109 TSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMHAAG---INHRDCYICHFLLHLPFPGREEDLKLS  185 (268)
T ss_pred             eeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCc---CccCCCChhhEEEeccccCCCCCceEE
Confidence            4788999876531           22344566678889999999999999   999999999999974       35678


Q ss_pred             Eecccceee
Q 043694           72 ISDFGLARI   80 (142)
Q Consensus        72 l~~fg~~~~   80 (142)
                      +.||+.+..
T Consensus       186 LIDl~r~~~  194 (268)
T PRK15123        186 VIDLHRAQI  194 (268)
T ss_pred             EEECCcccc
Confidence            889887643

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=97.54  E-value=0.00092  Score=47.52  Aligned_cols=53  Identities=25%  Similarity=0.392  Sum_probs=40.2

Q ss_pred             cCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           25 LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        25 l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +....+..+..|+.+.+.++|..+   ++|+++++.|++++.++...+++|+....
T Consensus       142 l~~~arl~lT~Q~I~lvA~Lh~~G---lVHgdi~~~nfll~~~G~v~Lg~F~~~~r  194 (288)
T PF14531_consen  142 LAFAARLSLTVQMIRLVANLHSYG---LVHGDIKPENFLLDQDGGVFLGDFSSLVR  194 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT---EEEST-SGGGEEE-TTS-EEE--GGGEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhcc---eEecccceeeEEEcCCCCEEEcChHHHee
Confidence            444455666788899999999999   99999999999999999999999975443

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=97.42  E-value=0.00048  Score=51.85  Aligned_cols=71  Identities=17%  Similarity=0.158  Sum_probs=50.5

Q ss_pred             hheeeeeCCCcccc-c-CHH----HHHHHHHHHHH-HhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeeec
Q 043694           11 LYLIFDVDPIRRFI-L-DWK----TCIHIIQGITQ-GLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVK   83 (142)
Q Consensus        11 ~~lv~e~~~~~~~~-l-~~~----~~~~~~~~i~~-~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~~   83 (142)
                      -+++|||+++.... + ...    .+..++..++. .+..+|..+   ++|+|+++.|+++..++.+++.|||+...+..
T Consensus       233 ~vLvmE~i~G~~L~~~~~~~~~~~~~~~ia~~~~~~~l~ql~~~g---~~H~D~hPgNilv~~~g~i~liDfG~~~~l~~  309 (437)
T TIGR01982       233 RVLTMEWIDGIPLSDIAALDEAGLDRKALAENLARSFLNQVLRDG---FFHADLHPGNIFVLKDGKIIALDFGIVGRLSE  309 (437)
T ss_pred             ceEEEEeECCcccccHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC---ceeCCCCcccEEECCCCcEEEEeCCCeeECCH
Confidence            46999998764321 0 000    12334554444 356678777   99999999999999899999999999887764


Q ss_pred             C
Q 043694           84 D   84 (142)
Q Consensus        84 ~   84 (142)
                      .
T Consensus       310 ~  310 (437)
T TIGR01982       310 E  310 (437)
T ss_pred             H
Confidence            3

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.39  E-value=0.00055  Score=46.29  Aligned_cols=69  Identities=26%  Similarity=0.306  Sum_probs=54.6

Q ss_pred             hhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC---ceEEecccc
Q 043694           10 YLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL---KSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~---~~~l~~fg~   77 (142)
                      ..|+|+|+.++..         ..++......++.+++..+.-+|..+   +.|+|+.+.||++..+.   .+.+.||..
T Consensus        91 ~s~lite~l~~~~~L~~~~~~~~~~~~~~~~~ll~~l~~~i~~lH~~g---i~H~Dl~~~NILv~~~~~~~~~~lIDld~  167 (206)
T PF06293_consen   91 RSYLITEALPGAQDLRDLLQQWEQLDPSQRRELLRALARLIAKLHDAG---IYHGDLNPSNILVDPDDGQYRFYLIDLDR  167 (206)
T ss_pred             eEEEEEEeCCCcccHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHCc---CCCCCCCcccEEEeCCCCceeEEEEcchh
Confidence            4588888876532         11445667788899999999999999   99999999999998766   678888887


Q ss_pred             eeee
Q 043694           78 ARIF   81 (142)
Q Consensus        78 ~~~~   81 (142)
                      +...
T Consensus       168 ~~~~  171 (206)
T PF06293_consen  168 MRFR  171 (206)
T ss_pred             ceeC
Confidence            6654

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.18  E-value=0.00097  Score=44.56  Aligned_cols=68  Identities=24%  Similarity=0.279  Sum_probs=43.0

Q ss_pred             hheeeeeCC--Ccccc------cCHHHHHHHHHHHHHHhhh-hhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           11 LYLIFDVDP--IRRFI------LDWKTCIHIIQGITQGLLY-LQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        11 ~~lv~e~~~--~~~~~------l~~~~~~~~~~~i~~~l~~-lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..+||||.+  +...+      ++......+..++...+.. +|..+   ++|+|+...||++..+ .+.+.|||.+...
T Consensus        81 ~~ivME~I~~~G~~~~~l~~~~~~~~~~~~~~~~il~~~~~~~~~~g---ivHGDLs~~NIlv~~~-~~~iIDf~qav~~  156 (188)
T PF01163_consen   81 NVIVMEYIGEDGVPLPRLKDVDLSPEEPKELLEEILEEIIKMLHKAG---IVHGDLSEYNILVDDG-KVYIIDFGQAVDS  156 (188)
T ss_dssp             TEEEEE--EETTEEGGCHHHCGGGGSTHHHHHHHHHHHHHHHHHCTT---EEESS-STTSEEEETT-CEEE--GTTEEET
T ss_pred             CEEEEEecCCCccchhhHHhccccchhHHHHHHHHHHHHHHHHHhcC---ceecCCChhhEEeecc-eEEEEecCcceec
Confidence            578999987  31111      1123345566677664444 56777   9999999999999877 8899999977654


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       157 ~  157 (188)
T PF01163_consen  157 S  157 (188)
T ss_dssp             T
T ss_pred             C
Confidence            3

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=96.97  E-value=0.0016  Score=47.19  Aligned_cols=63  Identities=21%  Similarity=0.195  Sum_probs=50.1

Q ss_pred             hheeeeeCCCcc------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEec
Q 043694           11 LYLIFDVDPIRR------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISD   74 (142)
Q Consensus        11 ~~lv~e~~~~~~------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~   74 (142)
                      ..++.||++.+.            ..+..+...+++.||.+|+.|||+.. |+++|+++.-..++...++.+|+..
T Consensus       147 viFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~~-PpiihgnlTc~tifiq~ngLIkig~  221 (458)
T KOG1266|consen  147 VIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSCD-PPIIHGNLTCDTIFIQHNGLIKIGS  221 (458)
T ss_pred             eEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhccC-CccccCCcchhheeecCCceEEecc
Confidence            446677766533            33777777899999999999999864 6799999999999998888888653

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=96.90  E-value=0.0002  Score=53.96  Aligned_cols=70  Identities=33%  Similarity=0.496  Sum_probs=56.6

Q ss_pred             hhheeeeeCCCcc-----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccce
Q 043694           10 YLYLIFDVDPIRR-----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~~-----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~   78 (142)
                      |+|+.|+.|....           ...++.....+..|++.++.|   ++   .+|+++++.||++..+...++.|||+.
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k~---~ihrdlkp~nif~~~d~q~kIgDFgl~  403 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---KG---LIHRDLKPSNIFFSDDDQLKIGDFGLV  403 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh---cc---chhhhccccccccccchhhhhhhhhhe
Confidence            6888888865422           336777888899999999998   56   899999999999998889999999987


Q ss_pred             eeeecCc
Q 043694           79 RIFVKDD   85 (142)
Q Consensus        79 ~~~~~~~   85 (142)
                      .......
T Consensus       404 ts~~~~~  410 (516)
T KOG1033|consen  404 TSQDKDE  410 (516)
T ss_pred             eecccCC
Confidence            6655443

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=96.87  E-value=0.004  Score=41.69  Aligned_cols=47  Identities=34%  Similarity=0.504  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC---ceEEecccceee
Q 043694           31 IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL---KSKISDFGLARI   80 (142)
Q Consensus        31 ~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~---~~~l~~fg~~~~   80 (142)
                      ..++..+-..+.-||...   ++|+|+.++|+++.+++   ...+.|||++..
T Consensus       116 ~~~~~~iG~~igklH~nd---iiHGDLTTSNill~~~~~~~~~~lIdfgls~~  165 (229)
T KOG3087|consen  116 AELARRIGELIGKLHDND---IIHGDLTTSNILLRSDGNQITPILIDFGLSSV  165 (229)
T ss_pred             HHHHHHHHHHHHHhhhCC---eecccccccceEEecCCCcCceEEEeecchhc
Confidence            456777777888899999   99999999999986443   347889998754

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=96.76  E-value=0.00086  Score=51.65  Aligned_cols=57  Identities=26%  Similarity=0.346  Sum_probs=50.4

Q ss_pred             cCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeeecC
Q 043694           25 LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD   84 (142)
Q Consensus        25 l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~~~   84 (142)
                      +.......+..+.+.++.++|+.+   +++++++..||+++.++.+++.|||.++.....
T Consensus        94 f~~~~~~~~~aelaLald~lh~l~---iiyrd~k~enilld~~Ghi~~tdfglske~v~~  150 (612)
T KOG0603|consen   94 FDELDVAFYLAELALALDHLHKLG---IAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKE  150 (612)
T ss_pred             hHHHHHHHHHHHHHHHHhhcchhH---HHHhcccccceeecccCccccCCchhhhHhHhh
Confidence            666667777888999999999999   999999999999999999999999998876543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=96.70  E-value=0.00088  Score=55.05  Aligned_cols=69  Identities=22%  Similarity=0.161  Sum_probs=54.6

Q ss_pred             HhhhheeeeeCCC------c-ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            8 QLYLYLIFDVDPI------R-RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         8 ~~~~~lv~e~~~~------~-~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      +...|||.+|...      + ...|..-...-++.|++.|+.-+|..+   +.|+|+|+.||++..-.++.++||.-.+
T Consensus        93 ~kAAylvRqyvkhnLyDRlSTRPFL~~iEKkWiaFQLL~al~qcH~~g---VcHGDIKsENILiTSWNW~~LtDFAsFK  168 (1431)
T KOG1240|consen   93 DKAAYLVRQYVKHNLYDRLSTRPFLVLIEKKWIAFQLLKALSQCHKLG---VCHGDIKSENILITSWNWLYLTDFASFK  168 (1431)
T ss_pred             hHHHHHHHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHcC---ccccccccceEEEeeechhhhhcccccC
Confidence            3456777666443      2 233666666678999999999999999   9999999999999998999999997543

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=96.40  E-value=0.00098  Score=54.40  Aligned_cols=40  Identities=35%  Similarity=0.685  Sum_probs=36.9

Q ss_pred             HHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           38 TQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        38 ~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.++.|+|..+   ++|+++++.|.++..-+.+|+.|||++..
T Consensus       153 vla~Eylh~yg---ivhrdlkpdnllIT~mGhiKlTDfgLsk~  192 (1205)
T KOG0606|consen  153 VLAVEYLHSYG---IVHRDLKPDNLLITSMGHIKLTDFGLSKK  192 (1205)
T ss_pred             hHHhHhhccCC---eecCCCCCCcceeeecccccccchhhhhh
Confidence            67899999999   99999999999999999999999998654

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=96.13  E-value=0.021  Score=43.86  Aligned_cols=58  Identities=17%  Similarity=0.280  Sum_probs=50.0

Q ss_pred             cCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeeecCc
Q 043694           25 LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD   85 (142)
Q Consensus        25 l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~~~~   85 (142)
                      .++...+.++.|+..|+.++|+.+   +.=+.+.+.+|+..++.+++++..|+...+....
T Consensus       390 ~~e~~lW~y~~QLtaaL~sIHssG---LAck~L~~~kIlv~G~~RIriS~C~i~Dvl~~d~  447 (655)
T KOG3741|consen  390 APEEVLWSYISQLTAALYSIHSSG---LACKTLDLKKILVTGKMRIRISGCGIMDVLQEDP  447 (655)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcC---ceeecccHhHeEeeCcceEEEecccceeeecCCC
Confidence            777899999999999999999998   7778999999999988899998888776655443

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=96.11  E-value=0.011  Score=45.71  Aligned_cols=37  Identities=24%  Similarity=0.387  Sum_probs=31.3

Q ss_pred             hccCCCceEecccCCCcEEeCCCC----ceEEecccceeeeecC
Q 043694           45 QEYSKLIVIHQDLKASNILLDEDL----KSKISDFGLARIFVKD   84 (142)
Q Consensus        45 h~~~~~~i~h~~l~~~nil~~~~~----~~~l~~fg~~~~~~~~   84 (142)
                      ...+   ++|+|.+|.|++++.++    ..++.|||+...++..
T Consensus       277 f~~G---ffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~~~  317 (537)
T PRK04750        277 FRDG---FFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLNKE  317 (537)
T ss_pred             HhCC---eeeCCCChHHeEEecCCCCCCeEEEEecceEEECCHH
Confidence            3456   99999999999998777    8999999998877654

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=96.09  E-value=0.016  Score=39.83  Aligned_cols=62  Identities=18%  Similarity=0.209  Sum_probs=45.2

Q ss_pred             hheeeeeCCCcccc----cCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           11 LYLIFDVDPIRRFI----LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        11 ~~lv~e~~~~~~~~----l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .++++||.++....    ++.    .+.-.+..++.-+|..+   +.|+|..+.|+++..+. ..+.|++..+.
T Consensus       118 ~~ll~EYIeG~~l~d~~~i~e----~~~~ki~~~ikqlH~~G---~~HGD~hpgNFlv~~~~-i~iID~~~k~~  183 (229)
T PF06176_consen  118 YVLLMEYIEGVELNDIEDIDE----DLAEKIVEAIKQLHKHG---FYHGDPHPGNFLVSNNG-IRIIDTQGKRM  183 (229)
T ss_pred             EEEEEEEecCeecccchhcCH----HHHHHHHHHHHHHHHcC---CccCCCCcCcEEEECCc-EEEEECccccc
Confidence            45899998774321    222    24455677788999999   99999999999887544 77888876543

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=95.78  E-value=0.053  Score=36.35  Aligned_cols=69  Identities=16%  Similarity=0.213  Sum_probs=48.1

Q ss_pred             hheeeeeCCCccc-------ccCHHHHHHHHHHHHHHhhhhhccC-----------------------------------
Q 043694           11 LYLIFDVDPIRRF-------ILDWKTCIHIIQGITQGLLYLQEYS-----------------------------------   48 (142)
Q Consensus        11 ~~lv~e~~~~~~~-------~l~~~~~~~~~~~i~~~l~~lh~~~-----------------------------------   48 (142)
                      .|+|++|.++...       .++..+...++.+++..+..+|+..                                   
T Consensus        75 ~~~v~e~i~G~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (223)
T cd05154          75 PFYVMERVDGRVLRDRLLRPELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEP  154 (223)
T ss_pred             ceEEEEEeCCEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhccccc
Confidence            4688888765321       2556667777777777777777421                                   


Q ss_pred             ------------------CCceEecccCCCcEEeCC--CCceEEeccccee
Q 043694           49 ------------------KLIVIHQDLKASNILLDE--DLKSKISDFGLAR   79 (142)
Q Consensus        49 ------------------~~~i~h~~l~~~nil~~~--~~~~~l~~fg~~~   79 (142)
                                        ...++|+|+.+.|++++.  +....+.||+.+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~  205 (223)
T cd05154         155 PAMERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELAT  205 (223)
T ss_pred             HHHHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEeccccc
Confidence                              245789999999999987  4556788887654

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=95.77  E-value=0.022  Score=40.42  Aligned_cols=51  Identities=22%  Similarity=0.495  Sum_probs=39.5

Q ss_pred             ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEe
Q 043694           22 RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKIS   73 (142)
Q Consensus        22 ~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~   73 (142)
                      +...+-.+.++++..++.|+.|||+-. +.+....+.+..+.++.+...+++
T Consensus       283 ~vvvd~sqav~faldiargmaflhsle-p~ipr~~lns~hvmidedltaris  333 (448)
T KOG0195|consen  283 SVVVDHSQAVRFALDIARGMAFLHSLE-PMIPRFYLNSKHVMIDEDLTARIS  333 (448)
T ss_pred             cEEEecchHHHHHHHHHhhHHHHhhcc-hhhhhhhcccceEEecchhhhhee
Confidence            345788899999999999999999865 335566688889999877655543

>PRK09902 hypothetical protein; Provisional

Probab=95.19  E-value=0.053  Score=37.03  Aligned_cols=66  Identities=9%  Similarity=0.006  Sum_probs=49.1

Q ss_pred             hheeeeeCCCc-----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCc--eEEecccc
Q 043694           11 LYLIFDVDPIR-----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLK--SKISDFGL   77 (142)
Q Consensus        11 ~~lv~e~~~~~-----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~--~~l~~fg~   77 (142)
                      .+||+|-..+-           ..+.+...+..+..+++..+.-+|..+   +.|+++.+.||+++.++.  +.+.||--
T Consensus       100 A~LVTe~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~~G---v~Hgdly~khIll~~~g~~~v~lIDlEk  176 (216)
T PRK09902        100 ALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSVN---RQHGCCYVRHIYVKTEGKAEAGFLDLEK  176 (216)
T ss_pred             EEEEEEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHCC---CcCCCCCHhheeecCCCCeeEEEEEhhc
Confidence            56777754421           123456666788999999999999999   999999999999975554  67777754


Q ss_pred             ee
Q 043694           78 AR   79 (142)
Q Consensus        78 ~~   79 (142)
                      ++
T Consensus       177 ~r  178 (216)
T PRK09902        177 SR  178 (216)
T ss_pred             cc
Confidence            43

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=95.07  E-value=0.069  Score=39.69  Aligned_cols=72  Identities=26%  Similarity=0.296  Sum_probs=54.1

Q ss_pred             HhhhheeeeeCCCc---ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694            8 QLYLYLIFDVDPIR---RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus         8 ~~~~~lv~e~~~~~---~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ..|+|+++++...+   ...-.|++...+..+.++.+.-+.  .+.++-|+++.-.||+++ ++.+.+.||.+++.-.
T Consensus       298 ~~y~yl~~kdhgt~is~ik~~~~~e~lsff~s~~sil~~le--kkf~fehrnlt~~niLId-~GnvtLIDfklsRl~~  372 (488)
T COG5072         298 TLYLYLHFKDHGTPISIIKADRSEEELSFFWSCISILDILE--KKFPFEHRNLTLDNILID-EGNVTLIDFKLSRLSY  372 (488)
T ss_pred             ceEEEEEEecCCceeeeeecccHHHHHHHHHHHHHHHhhhh--hcCCcccccccccceeee-cCceEEEEeeeeeccc
Confidence            35788888874332   233678888888888777665553  334588999999999999 8999999999998543

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=94.22  E-value=0.19  Score=33.64  Aligned_cols=55  Identities=16%  Similarity=0.123  Sum_probs=46.8

Q ss_pred             ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccce
Q 043694           24 ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA   78 (142)
Q Consensus        24 ~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~   78 (142)
                      .-+|..+.+++.+++..+.+++....-.+.-.|+++.|+.+..++..++.|....
T Consensus        55 ~~~w~~R~~iA~~lL~~l~~l~~~~~~~~~lcDv~~~nfgv~~~~~lk~iDld~v  109 (188)
T PF12260_consen   55 QSPWEQRAKIALQLLELLEELDHGPLGFFYLCDVSPDNFGVNDDGRLKLIDLDDV  109 (188)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecchHHeEEeCCCcEEEEechhc
Confidence            3699999999999999999998754344888999999999998889999987643

Proteins in this uncharacterised family are described as transmembrane proteins.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=93.96  E-value=0.099  Score=41.22  Aligned_cols=66  Identities=17%  Similarity=0.217  Sum_probs=47.6

Q ss_pred             hheeeeeCCCcc---cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccce
Q 043694           11 LYLIFDVDPIRR---FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA   78 (142)
Q Consensus        11 ~~lv~e~~~~~~---~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~   78 (142)
                      +|+|.|.+.--.   ..++...+.--+.||+.|+-|||..+.  ++|+|+....+++...+..++.+|-..
T Consensus        84 ~ylvTErV~Pl~~~lk~l~~~~v~~Gl~qIl~AL~FL~~d~~--lvHgNv~~~SVfVn~~GeWkLggle~v  152 (690)
T KOG1243|consen   84 LYLVTERVRPLETVLKELGKEEVCLGLFQILAALSFLNDDCN--LVHGNVCKDSVFVNESGEWKLGGLELV  152 (690)
T ss_pred             eEEEeeccccHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCC--eeeccEeeeeEEEcCCCcEEEeeeEEE
Confidence            677877643211   112233333346889999999986552  899999999999999999999987554

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=93.52  E-value=0.31  Score=34.26  Aligned_cols=68  Identities=19%  Similarity=0.195  Sum_probs=46.2

Q ss_pred             hheeeeeCCCccc--------ccCHHHHHHHHHHHHHHhhhhhc-cCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           11 LYLIFDVDPIRRF--------ILDWKTCIHIIQGITQGLLYLQE-YSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        11 ~~lv~e~~~~~~~--------~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|||||......        .+.......+.-+++..+.-|-. ..   ++|+||+.-|+++. .+..-+.|+|-+-..
T Consensus       141 nVLvMEfIg~~g~pAP~LkDv~~e~~e~~~~~~~~v~~~~~l~~~a~---LVHgDLSEyNiL~~-~~~p~iID~~QaV~~  216 (268)
T COG1718         141 NVLVMEFIGDDGLPAPRLKDVPLELEEAEGLYEDVVEYMRRLYKEAG---LVHGDLSEYNILVH-DGEPYIIDVSQAVTI  216 (268)
T ss_pred             CeEEEEeccCCCCCCCCcccCCcCchhHHHHHHHHHHHHHHHHHhcC---cccccchhhheEEE-CCeEEEEECcccccc
Confidence            5789999654321        13333344555566666665544 45   99999999999998 778888999876544


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       217 ~  217 (268)
T COG1718         217 D  217 (268)
T ss_pred             C
Confidence            3

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=93.20  E-value=0.22  Score=35.44  Aligned_cols=67  Identities=21%  Similarity=0.176  Sum_probs=43.3

Q ss_pred             hhheeeeeCCCcc---cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR---FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~---~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ....|||+.++..   .+++-+....++..|..-+.-.-..+   ++|+|++.-||+++.++...+.||--+-
T Consensus       181 RHaVvMe~ieG~eL~~~r~~~en~~~il~~il~~~~~~~~~G---iVHGDlSefNIlV~~dg~~~vIDwPQ~v  250 (304)
T COG0478         181 RHAVVMEYIEGVELYRLRLDVENPDEILDKILEEVRKAYRRG---IVHGDLSEFNILVTEDGDIVVIDWPQAV  250 (304)
T ss_pred             cceeeeehcccceeecccCcccCHHHHHHHHHHHHHHHHHcC---ccccCCchheEEEecCCCEEEEeCcccc
Confidence            4567788866522   11223334344444444443333445   9999999999999999999999996443

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=93.03  E-value=0.037  Score=43.49  Aligned_cols=56  Identities=39%  Similarity=0.576  Sum_probs=47.6

Q ss_pred             cCHHHHHHHHHHHHHHhhhhh-ccCCCceEecccCCCcEEeCCCC-ceEEecccceeeeec
Q 043694           25 LDWKTCIHIIQGITQGLLYLQ-EYSKLIVIHQDLKASNILLDEDL-KSKISDFGLARIFVK   83 (142)
Q Consensus        25 l~~~~~~~~~~~i~~~l~~lh-~~~~~~i~h~~l~~~nil~~~~~-~~~l~~fg~~~~~~~   83 (142)
                      .+....-.+..+...++.|+| ..+   +.|+++++.|.+++.++ ..++.|||++..+..
T Consensus       120 ~~~~~~~~~~~ql~s~l~~~H~~~~---~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~  177 (601)
T KOG0590|consen  120 TSSSSASRYLPQLNSGLSYLHPENG---VTHRDIKPSNSLLDESGSALKIADFGLATAYRN  177 (601)
T ss_pred             CCCcchhhhhhhhccCccccCcccc---cccCCCCCccchhccCCCcccCCCchhhccccc
Confidence            444556678899999999999 777   99999999999998888 899999999877665

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=91.90  E-value=0.13  Score=39.63  Aligned_cols=59  Identities=25%  Similarity=0.369  Sum_probs=47.6

Q ss_pred             cccCHHHHHHHHHHHHH----HhhhhhccCCCceEecccCCCcEEeCCC-CceEEecccceeeeecC
Q 043694           23 FILDWKTCIHIIQGITQ----GLLYLQEYSKLIVIHQDLKASNILLDED-LKSKISDFGLARIFVKD   84 (142)
Q Consensus        23 ~~l~~~~~~~~~~~i~~----~l~~lh~~~~~~i~h~~l~~~nil~~~~-~~~~l~~fg~~~~~~~~   84 (142)
                      ..++.............    |+.++|+..   ++|.++++.|++...+ ..+++.+||.-..+...
T Consensus       213 ~~~p~~~l~~~~~~~~~~~~~al~~~hs~~---~~~~~~kp~~i~~~~~~~s~~~~df~~v~~i~~~  276 (524)
T KOG0601|consen  213 NFLPDNLLWNSLRDWLSRDVTALSHLHSNN---IVHDDLKPANIFTTSDWTSCKLTDFGLVSKISDG  276 (524)
T ss_pred             ccCCchhhhhHHhhhhhcccccccccCCCc---ccccccchhheecccccceeecCCcceeEEccCC
Confidence            33666666677777777    999999998   9999999999999988 88899999876655433

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=90.72  E-value=0.13  Score=39.61  Aligned_cols=65  Identities=28%  Similarity=0.360  Sum_probs=50.1

Q ss_pred             heeeeeCCCcccc--------cCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC-CceEEeccccee
Q 043694           12 YLIFDVDPIRRFI--------LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED-LKSKISDFGLAR   79 (142)
Q Consensus        12 ~lv~e~~~~~~~~--------l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~-~~~~l~~fg~~~   79 (142)
                      |+=.||+.++...        ++...++.+..+++.++.++|+..   ++|.|+++.||+...+ +..++.+|++..
T Consensus       342 ~ip~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~l~~i~s~~---~~~~d~~psni~i~~~~~~~~~~~~~~~t  415 (524)
T KOG0601|consen  342 YIPLEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTALNVIHSKL---FVHLDVKPSNILISNDGFFSKLGDFGCWT  415 (524)
T ss_pred             cCchhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhccccccchh---hhcccccccceeeccchhhhhcccccccc
Confidence            3445566554322        666777788899999999999887   9999999999999875 777788887664

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=90.25  E-value=0.22  Score=39.45  Aligned_cols=44  Identities=18%  Similarity=0.471  Sum_probs=37.2

Q ss_pred             HHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           34 IQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        34 ~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      +.+++.|+.|+|...  .++|+++.+.++....++.+|+..|+.+-
T Consensus       105 l~~v~dgl~flh~sA--k~VH~ni~p~~i~~na~~~wkl~Gf~f~v  148 (700)
T KOG2137|consen  105 LGNVADGLAFLHRSA--KVVHGNIQPEAIVVNANGDWKLAGFSFCV  148 (700)
T ss_pred             hhcccchhhhhccCc--ceeecccchhheeeccCcceeeccchhhh
Confidence            355668999999765  39999999999999999999999987654

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=87.05  E-value=0.77  Score=31.49  Aligned_cols=31  Identities=29%  Similarity=0.454  Sum_probs=25.2

Q ss_pred             CCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           49 KLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        49 ~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      .+.++|+|+.+.|++++.+....+.||+.+.
T Consensus       163 ~~~l~HGD~~~~Nvlv~~~~i~giIDw~~a~  193 (235)
T cd05155         163 PPVWFHGDLAPGNLLVQDGRLSAVIDFGCLG  193 (235)
T ss_pred             CceEEeCCCCCCcEEEECCCEEEEEeCcccC
Confidence            3458999999999999876666789998654

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=85.92  E-value=0.83  Score=31.39  Aligned_cols=32  Identities=31%  Similarity=0.406  Sum_probs=26.4

Q ss_pred             CCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           49 KLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        49 ~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.++|+|+.+.|++++.+....+.||+.+..
T Consensus       162 ~~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~~  193 (244)
T cd05150         162 DLVVTHGDACLPNIIVDPGKFSGFIDLGRLGV  193 (244)
T ss_pred             ceEEECCCCCCccEEEeCCcEEEEEEcccccc
Confidence            34689999999999999877778999976643

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=83.76  E-value=1.2  Score=29.76  Aligned_cols=33  Identities=39%  Similarity=0.436  Sum_probs=21.4

Q ss_pred             CCceEecccCCCcEEeC-CCCceEEecccceeee
Q 043694           49 KLIVIHQDLKASNILLD-EDLKSKISDFGLARIF   81 (142)
Q Consensus        49 ~~~i~h~~l~~~nil~~-~~~~~~l~~fg~~~~~   81 (142)
                      ...++|+|+.+.|++++ .++.+.+.||+.+..-
T Consensus       165 ~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~~~  198 (239)
T PF01636_consen  165 PPVLIHGDLHPGNILVDPSDGRIGIIDFEDAGWG  198 (239)
T ss_dssp             CEEEE-SS-SGGGEEEESSTTEEEE--GTT-EEE
T ss_pred             CcEEEEeccccccceeeeccceeEEEecccceEC
Confidence            34599999999999998 4555589999876543

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=83.04  E-value=4.9  Score=31.37  Aligned_cols=33  Identities=27%  Similarity=0.416  Sum_probs=29.7

Q ss_pred             eEecccCCCcEEeCCCCceEEecccceeeeecC
Q 043694           52 VIHQDLKASNILLDEDLKSKISDFGLARIFVKD   84 (142)
Q Consensus        52 i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~~~   84 (142)
                      +.|.|..+.|+++..++.....|||+...+...
T Consensus       286 ffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~~~  318 (517)
T COG0661         286 FFHADPHPGNILVRSDGRIVLLDFGIVGRLDPK  318 (517)
T ss_pred             ccccCCCccceEEecCCcEEEEcCcceecCCHH
Confidence            899999999999999999999999988776544

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=81.39  E-value=6  Score=28.10  Aligned_cols=33  Identities=36%  Similarity=0.461  Sum_probs=26.5

Q ss_pred             CCCceEecccCCCcEEeCCC----CceEEecccceee
Q 043694           48 SKLIVIHQDLKASNILLDED----LKSKISDFGLARI   80 (142)
Q Consensus        48 ~~~~i~h~~l~~~nil~~~~----~~~~l~~fg~~~~   80 (142)
                      ....++|+|+.+.|++++.+    ....+.||..+..
T Consensus       177 ~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~~  213 (302)
T cd05156         177 SPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASY  213 (302)
T ss_pred             CCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCCC
Confidence            34468999999999999874    7788999976653

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>PRK05231 homoserine kinase; Provisional

Probab=81.07  E-value=1.4  Score=31.67  Aligned_cols=29  Identities=41%  Similarity=0.454  Sum_probs=24.5

Q ss_pred             ceEecccCCCcEEeCCCCceEEeccccee
Q 043694           51 IVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        51 ~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      .++|+|+.+.|++++.+....+.||+.+.
T Consensus       188 ~liHgD~~~~Nil~~~~~~~~iIDf~~~~  216 (319)
T PRK05231        188 GVIHADLFRDNVLFEGDRLSGFIDFYFAC  216 (319)
T ss_pred             ccCCCCCCCCcEEEECCceEEEEeccccc
Confidence            59999999999999877667899997654

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=80.52  E-value=4.3  Score=31.25  Aligned_cols=49  Identities=16%  Similarity=0.324  Sum_probs=42.6

Q ss_pred             cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEec
Q 043694           23 FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISD   74 (142)
Q Consensus        23 ~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~   74 (142)
                      ....|.-.+..++.++.+...+|..+   ...+|+...|++.++++...+.|
T Consensus       112 P~~~w~fllrvaRnlA~aFA~lH~~G---h~vGDVn~~~~lVsd~~~V~LVd  160 (637)
T COG4248         112 PHCAWDFLLRVARNLASAFATLHEHG---HVVGDVNQNSFLVSDDSKVVLVD  160 (637)
T ss_pred             CccccHHHHHHHHHHHHHHHHHHhcC---CcccccCccceeeecCceEEEEc
Confidence            34899999999999999999999998   88899999999998877666554

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=80.33  E-value=7.5  Score=30.53  Aligned_cols=68  Identities=15%  Similarity=0.143  Sum_probs=45.0

Q ss_pred             hheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC----CCceEEecccc
Q 043694           11 LYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE----DLKSKISDFGL   77 (142)
Q Consensus        11 ~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~----~~~~~l~~fg~   77 (142)
                      -.|+|||+++..         ..++...+...+.++..-.-+  ..+   ++|.|-.|.|+++.+    +..+.+.|||+
T Consensus       277 RVLtME~~~G~~i~Dl~~i~~~gi~~~~i~~~l~~~~~~qIf--~~G---ffHaDPHPGNilv~~~~~~~~~ivllDhGl  351 (538)
T KOG1235|consen  277 RVLTMEYVDGIKINDLDAIDKRGISPHDILNKLVEAYLEQIF--KTG---FFHADPHPGNILVRPNPEGDEEIVLLDHGL  351 (538)
T ss_pred             eEEEEEecCCccCCCHHHHHHcCCCHHHHHHHHHHHHHHHHH--hcC---CccCCCCCCcEEEecCCCCCccEEEEcccc
Confidence            468999987732         335555554444443332222  234   899999999999984    56788999998


Q ss_pred             eeeeec
Q 043694           78 ARIFVK   83 (142)
Q Consensus        78 ~~~~~~   83 (142)
                      -..+..
T Consensus       352 ~~~is~  357 (538)
T KOG1235|consen  352 YAVISH  357 (538)
T ss_pred             cccccH
Confidence            765543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	142
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		8e-10
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		1e-09
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		2e-09
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		2e-09
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		2e-09
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		3e-09
2qlu_A	314	Crystal Structure Of Activin Receptor Type Ii Kinas		7e-08
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-07
3q4t_A	322	Crystal Structure Of Activin Receptor Type-Iia (Acv		2e-07
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		2e-07
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-07
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		2e-07
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		3e-07
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		3e-07
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		3e-07
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		3e-07
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		3e-07
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		3e-07
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-07
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		3e-07
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		3e-07
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		3e-07
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		3e-07
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		3e-07
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		3e-07
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		3e-07
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		3e-07
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		3e-07
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		3e-07
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		3e-07
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		3e-07
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		3e-07
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		3e-07
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		3e-07
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		3e-07
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		3e-07
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		3e-07
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		3e-07
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		3e-07
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		3e-07
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		3e-07
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-07
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		3e-07
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		3e-07
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		4e-07
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		4e-07
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		6e-07
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		7e-07
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		8e-07
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		9e-07
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		1e-06
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		1e-06
2ivv_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		2e-06
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		2e-06
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		3e-06
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		4e-06
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		4e-06
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		4e-06
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		5e-06
2ivt_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		5e-06
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		7e-06
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		7e-06
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		7e-06
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		7e-06
4h58_A	275	Braf In Complex With Compound 3 Length = 275		7e-06
3a4o_X	286	Lyn Kinase Domain Length = 286		7e-06
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		7e-06
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		7e-06
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		7e-06
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		8e-06
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		8e-06
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		8e-06
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		8e-06
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		8e-06
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		8e-06
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		8e-06
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		8e-06
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		8e-06
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		8e-06
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		9e-06
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		9e-06
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		9e-06
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		1e-05
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		1e-05
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		1e-05
2ayp_A	269	Crystal Structure Of Chk1 With An Indol Inhibitor L		1e-05
2br1_A	297	Structure-Based Design Of Novel Chk1 Inhibitors: In		1e-05
1ia8_A	289	The 1.7 A Crystal Structure Of Human Cell Cycle Che		1e-05
2e9v_A	268	Structure Of H-Chk1 Complexed With A859017 Length =		1e-05
1zlt_A	295	Crystal Structure Of Chk1 Complexed With A Hymenald		1e-05
4fsm_A	279	Crystal Structure Of The Chk1 Length = 279		1e-05
2hog_A	322	Crystal Structure Of Chek1 In Complex With Inhibito		1e-05
2r0u_A	323	Crystal Structure Of Chek1 In Complex With Inhibito		1e-05
4fsu_A	279	Crystal Structure Of The Chk1 Length = 279		1e-05
4fsn_A	278	Crystal Structure Of The Chk1 Length = 278		1e-05
3jvr_A	271	Characterization Of The Chk1 Allosteric Inhibitor B		1e-05
2ghg_A	269	H-Chk1 Complexed With A431994 Length = 269		1e-05
1zys_A	273	Co-Crystal Structure Of Checkpoint Kinase Chk1 With		1e-05
2x8e_A	276	Discovery Of A Novel Class Of Triazolones As Checkp		1e-05
4fsy_A	279	Crystal Structure Of The Chk1 Length = 279		1e-05
1u5q_A	348	Crystal Structure Of The Tao2 Kinase Domain: Activa		1e-05
2gcd_A	309	Tao2 Kinase Domain-Staurosporine Structure Length =		1e-05
3ot3_A	273	X-Ray Crystal Structure Of Compound 22k Bound To Hu		1e-05
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		1e-05
4ft3_A	279	Crystal Structure Of The Chk1 Length = 279		1e-05
4fsz_A	279	Crystal Structure Of The Chk1 Length = 279		1e-05
4fsw_A	279	Crystal Structure Of The Chk1 Length = 279		1e-05
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		1e-05
4fst_A	269	Crystal Structure Of The Chk1 Length = 269		1e-05
2ydj_A	276	Discovery Of Checkpoint Kinase Inhibitor Azd7762 By		1e-05
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		1e-05
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		1e-05
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		1e-05
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		1e-05
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		1e-05
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		1e-05
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		1e-05
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		1e-05
2pl0_A	289	Lck Bound To Imatinib Length = 289		1e-05
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		1e-05
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		1e-05
3dak_A	290	Crystal Structure Of Domain-Swapped Osr1 Kinase Dom		2e-05
2vwi_A	303	Structure Of The Osr1 Kinase, A Hypertension Drug T		2e-05
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		2e-05
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		2e-05
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		2e-05
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		2e-05
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		2e-05
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		2e-05
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		2e-05
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		3e-05
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		3e-05
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		3e-05
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		3e-05
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		3e-05
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		3e-05
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		3e-05
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		3e-05
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		4e-05
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		4e-05
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		5e-05
3a7f_A	303	Human Mst3 Kinase Length = 303		5e-05
4fl3_A	635	Structural And Biophysical Characterization Of The		5e-05
4fl2_A	636	Structural And Biophysical Characterization Of The		5e-05
3zhp_C	294	Human Mst3 (stk24) In Complex With Mo25beta Length		5e-05
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		5e-05
3ckx_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		5e-05
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		5e-05
3ckw_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		5e-05
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		6e-05
1fvr_A	327	Tie2 Kinase Domain Length = 327		6e-05
3tub_A	293	Crystal Structure Of Syk Kinase Domain With 1-(5-(6		6e-05
3vf8_A	299	Crystal Structure Of Spleen Tyrosine Kinase Syk Cat		6e-05
4dfl_A	274	Crystal Structure Of Spleen Tyrosine Kinase Complex		6e-05
3emg_A	291	Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylami		6e-05
1xba_A	291	Crystal Structure Of Apo Syk Tyrosine Kinase Domain		6e-05
3srv_A	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		6e-05
3srv_B	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		6e-05
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		6e-05
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		6e-05
4f4p_A	273	Syk In Complex With Ligand Lasw836 Length = 273		6e-05
3thb_A	333	Structure Of Plk1 Kinase Domain In Complex With A B		8e-05
2v5q_A	315	Crystal Structure Of Wild-type Plk-1 Kinase Domain		8e-05
2yac_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		9e-05
2ou7_A	335	Structure Of The Catalytic Domain Of Human Polo-Lik		9e-05
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		9e-05
3kb7_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		9e-05
2dyl_A	318	Crystal Structure Of Human Mitogen-Activated Protei		9e-05
2rku_A	294	Structure Of Plk1 In Complex With Bi2536 Length = 2		1e-04
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		1e-04
4ic7_A	442	Crystal Structure Of The Erk5 Kinase Domain In Comp		1e-04
2f9g_A	353	Crystal Structure Of Fus3 Phosphorylated On Tyr182		1e-04
2b9h_A	353	Crystal Structure Of Fus3 With A Docking Motif From		1e-04
2b9f_A	353	Crystal Structure Of Non-Phosphorylated Fus3 Length		1e-04
2xik_A	294	Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K		1e-04
4b99_A	398	Crystal Structure Of Mapk7 (Erk5) With Inhibitor Le		1e-04
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		1e-04
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		1e-04
3mi9_A	351	Crystal Structure Of Hiv-1 Tat Complexed With Human		1e-04
4ec8_A	373	Structure Of Full Length Cdk9 In Complex With Cycli		2e-04
4bcf_A	331	Structure Of Cdk9 In Complex With Cyclin T And A 2-		2e-04
3blh_A	331	Crystal Structure Of Human Cdk9CYCLINT1 Length = 33		2e-04
1luf_A	343	Crystal Structure Of The Musk Tyrosine Kinase: Insi		2e-04
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		2e-04
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		2e-04
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		2e-04
3g2f_A	336	Crystal Structure Of The Kinase Domain Of Bone Morp		2e-04
3h9r_A	330	Crystal Structure Of The Kinase Domain Of Type I Ac		2e-04
1u59_A	287	Crystal Structure Of The Zap-70 Kinase Domain In Co		2e-04
3kex_A	325	Crystal Structure Of The Catalytically Inactive Kin		2e-04
3lmg_A	344	Crystal Structure Of The Erbb3 Kinase Domain In Com		2e-04
3bea_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A P		2e-04
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		2e-04
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		2e-04
2baq_A	365	P38alpha Bound To Ro3201195 Length = 365		2e-04
2w5a_A	279	Human Nek2 Kinase Adp-Bound Length = 279		2e-04
3d83_A	360	Crystal Structure Of P38 Kinase In Complex With A B		2e-04
2bal_A	365	P38alpha Map Kinase Bound To Pyrazoloamine Length =		2e-04
3mtf_A	301	Crystal Structure Of The Acvr1 Kinase In Complex Wi		2e-04
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		2e-04
3e92_A	371	Crystal Structure Of P38 Kinase In Complex With A B		2e-04
3oht_A	389	Crystal Structure Of Salmo Salar P38alpha Length =		2e-04
3k3i_A	350	P38alpha Bound To Novel Dgf-Out Compound Pf-0021595		2e-04
3hec_A	348	P38 In Complex With Imatinib Length = 348		2e-04
3s3i_A	349	P38 Kinase Crystal Structure In Complex With Small		2e-04
4dym_A	301	Crystal Structure Of The Acvr1 Kinase Domain In Com		2e-04
2puu_A	348	Crystal Structure Of P38 Complex With 1-(5-Tert-But		2e-04
1zzl_A	351	Crystal Structure Of P38 With Triazolopyridine Leng		2e-04
2ghl_A	348	Mutant Mus Musculus P38 Kinase Domain In Complex Wi		2e-04
2lgc_A	359	Joint Nmr And X-Ray Refinement Reveals The Structur		2e-04
3nnx_A	354	Crystal Structure Of Phosphorylated P38 Alpha In Co		2e-04
1ian_A	366	Human P38 Map Kinase Inhibitor Complex Length = 366		2e-04
3odz_X	360	Crystal Structure Of P38alpha Y323r Active Mutant L		2e-04
3nnu_A	354	Crystal Structure Of P38 Alpha In Complex With Dp13		2e-04
2gtm_A	348	Mutated Mouse P38 Map Kinase Domain In Complex With		2e-04
3oef_X	360	Crystal Structure Of Y323f Inactive Mutant Of P38al		2e-04
3ody_X	360	Crystal Structure Of P38alpha Y323q Active Mutant L		2e-04
3od6_X	360	Crystal Structure Of P38alpha Y323t Active Mutant L		2e-04
2fst_X	367	Mitogen Activated Protein Kinase P38alpha (d176a+f3		2e-04
2baj_A	365	P38alpha Bound To Pyrazolourea Length = 365		2e-04
3hrb_A	359	P38 Kinase Crystal Structure In Complex With Small		2e-04
1ywr_A	360	Crystal Structure Analysis Of Inactive P38 Kinase D		2e-04
4e5a_X	360	The W197a Mutant Of P38a Map Kinase Length = 360		2e-04
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		2e-04
2oza_B	366	Structure Of P38alpha Complex Length = 366		2e-04
2fso_X	367	Mitogen Activated Protein Kinase P38alpha (D176a) A		2e-04
1di9_A	360	The Structure Of P38 Mitogen-Activated Protein Kina		2e-04
1yw2_A	360	Mutated Mus Musculus P38 Kinase (Mp38) Length = 360		2e-04
1lew_A	360	Crystal Structure Of Map Kinase P38 Complexed To Th		2e-04
3p4k_A	370	The Third Conformation Of P38a Map Kinase Observed		2e-04
3dt1_A	383	P38 Complexed With A Quinazoline Inhibitor Length =		2e-04
3hvc_A	362	Crystal Structure Of Human P38alpha Map Kinase Leng		2e-04
2npq_A	367	A Novel Lipid Binding Site In The P38 Alpha Map Kin		2e-04
2fsl_X	367	Mitogen Activated Protein Kinase P38alpha (D176a+f3		2e-04
3fi4_A	372	P38 Kinase Crystal Structure In Complex With Ro4499		2e-04
3k3j_A	362	P38alpha Bound To Novel Dfg-Out Compound Pf-0041612		2e-04
1oz1_A	372	P38 Mitogen-Activated Kinase In Complex With 4-Azai		2e-04
3py3_A	380	Crystal Structure Of Phosphorylated P38alpha Map Ki		2e-04
3gcu_A	360	Human P38 Map Kinase In Complex With Rl48 Length =		2e-04
2gfs_A	372	P38 Kinase Crystal Structure In Complex With Ro3201		2e-04
3mpt_A	371	Crystal Structure Of P38 Kinase In Complex With A P		2e-04
3kq7_A	380	Structure Of Human P38alpha With N-[4-Methyl-3-(6-{		2e-04
1m7q_A	366	Crystal Structure Of P38 Map Kinase In Complex With		2e-04
3d7z_A	360	Crystal Structure Of P38 Kinase In Complex With A B		2e-04
3tg1_A	380	Crystal Structure Of P38alpha In Complex With A Map		2e-04
1bl6_A	379	The Complex Structure Of The Map Kinase P38SB216995		2e-04
1bmk_A	379	The Complex Structure Of The Map Kinase P38SB218655		3e-04
3zsg_A	362	X-Ray Structure Of P38alpha Bound To Tak-715 Length		3e-04
4ewq_A	383	Human P38 Alpha Mapk In Complex With A Pyridazine B		3e-04
3oz6_A	388	Crystal Structure Of Mapk From Cryptosporidium Parv		3e-04
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		3e-04
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		3e-04
3pp0_A	338	Crystal Structure Of The Kinase Domain Of Human Her		3e-04
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		3e-04
2zv2_A	298	Crystal Structure Of Human CalciumCALMODULIN-Depend		3e-04
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		3e-04
1ove_A	366	The Structure Of P38 Alpha In Complex With A Dihydr		3e-04
2y8o_A	362	Crystal Structure Of Human P38alpha Complexed With		3e-04
1vzo_A	355	The Structure Of The N-Terminal Kinase Domain Of Ms		3e-04
3gop_A	361	Crystal Structure Of The Egf Receptor Juxtamembrane		3e-04
2r0i_A	327	Crystal Structure Of A Kinase Mark2PAR-1 Mutant Len		3e-04
3d5w_A	317	Crystal Structure Of A Phosphorylated Polo-Like Kin		4e-04
2rfd_A	324	Crystal Structure Of The Complex Between The Egfr K		4e-04
1zmw_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		4e-04
1zmu_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		4e-04
3d5v_A	317	Crystal Structure Of An Activated (Thr->asp) Polo-L		4e-04
1zmv_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		4e-04
3d5u_A	317	Crystal Structure Of A Wildtype Polo-Like Kinase 1		4e-04
3db6_A	301	Crystal Structure Of An Activated (Thr->asp) Polo-L		4e-04
2wzj_A	327	Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82		4e-04
3iec_A	319	Helicobacter Pylori Caga Inhibits Par1MARK FAMILY K		4e-04
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		4e-04
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		4e-04
3lco_A	324	Inhibitor Bound To A Dfg-Out Structure Of The Kinas		4e-04
2gs7_A	330	Crystal Structure Of The Inactive Egfr Kinase Domai		4e-04
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		4e-04
2fh9_A	274	Structure And Dimerization Of The Kinase Domain Fro		4e-04
4hjo_A	337	Crystal Structure Of The Inactive Egfr Tyrosine Kin		4e-04
3ug1_A	334	Crystal Structure Of The Mutated Egfr Kinase Domain		4e-04
1xkk_A	352	Egfr Kinase Domain Complexed With A Quinazoline Inh		4e-04
1m14_A	333	Tyrosine Kinase Domain From Epidermal Growth Factor		4e-04
4g5j_A	330	Crystal Structure Of Egfr Kinase In Complex With Bi		4e-04
3ika_A	331	Crystal Structure Of Egfr 696-1022 T790m Mutant Cov		4e-04
3vjo_A	334	Crystal Structure Of The Wild-Type Egfr Kinase Doma		4e-04
2gs2_A	330	Crystal Structure Of The Active Egfr Kinase Domain		4e-04
4i24_A	329	Structure Of T790m Egfr Kinase Domain Co-crystalliz		4e-04
3lzb_A	327	Egfr Kinase Domain Complexed With An Imidazo[2,1-B]		4e-04
2eb2_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (G7		4e-04
2j5f_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		4e-04
4g5p_A	330	Crystal Structure Of Egfr Kinase T790m In Complex W		4e-04
2pml_X	348	Crystal Structure Of Pfpk7 In Complex With An Atp A		4e-04
2jiu_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		4e-04
2jiv_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		4e-04
2jit_A	327	Crystal Structure Of Egfr Kinase Domain T790m Mutat		4e-04
2j5e_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		4e-04
4i23_A	329	Crystal Structure Of The Wild-type Egfr Kinase Doma		4e-04
2itn_A	327	Crystal Structure Of Egfr Kinase Domain G719s Mutat		4e-04
4ejn_A	446	Crystal Structure Of Autoinhibited Form Of Akt1 In		4e-04
3o96_A	446	Crystal Structure Of Human Akt1 With An Allosteric		4e-04
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		5e-04
2ogv_A	317	Crystal Structure Of The Autoinhibited Human C-Fms		5e-04
3lcd_A	329	Inhibitor Bound To A Dfg-In Structure Of The Kinase		5e-04
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		5e-04
3bel_A	315	X-Ray Structure Of Egfr In Complex With Oxime Inhib		5e-04
4a4x_A	279	Nek2-Ede Bound To Cct248662 Length = 279		5e-04
2hak_A	328	Catalytic And Ubiqutin-Associated Domains Of Mark1P		5e-04
2phk_A	277	The Crystal Structure Of A Phosphorylase Kinase Pep		5e-04
1ql6_A	298	The Catalytic Mechanism Of Phosphorylase Kinase Pro		5e-04
3sa0_A	360	Complex Of Erk2 With Norathyriol Length = 360		5e-04
1phk_A	298	Two Structures Of The Catalytic Domain Of Phosphory		5e-04
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		5e-04
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		5e-04
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		5e-04
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		6e-04
1pme_A	380	Structure Of Penta Mutant Human Erk2 Map Kinase Com		6e-04
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		6e-04
2pvy_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		6e-04
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		6e-04
3tei_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		6e-04
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		6e-04
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		6e-04
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		6e-04
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		6e-04
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		6e-04
3mh2_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		6e-04
4fv7_A	360	Crystal Structure Of The Erk2 Complexed With E94 Le		6e-04
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		6e-04
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		6e-04
4fux_A	360	Crystal Structure Of The Erk2 Complexed With E75 Le		6e-04
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		6e-04
3qyw_A	364	Crystal Structure Of Erk2 In Complex With An Inhibi		6e-04
2y9q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		6e-04
2i1m_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An		6e-04
2gph_A	364	Docking Motif Interactions In The Map Kinase Erk2 L		6e-04
2ojg_A	380	Crystal Structure Of Erk2 In Complex With N,n-dimet		6e-04
1gol_A	364	Coordinates Of Rat Map Kinase Erk2 With An Arginine		6e-04
4gsb_A	364	Monoclinic Crystal Form Of The Apo-Erk2 Length = 36		6e-04
3r63_A	358	Structure Of Erk2 (Spe) Mutant (S246e) Length = 358		6e-04
3zuv_A	364	Crystal Structure Of A Designed Selected Ankyrin Re		6e-04
3zu7_A	365	Crystal Structure Of A Designed Selected Ankyrin Re		6e-04
2z7l_A	366	Unphosphorylated Mitogen Activated Protein Kinase E		6e-04
3c9w_A	357	Crystal Structure Of Erk-2 With Hypothemycin Covale		6e-04
2fys_B	364	Crystal Structure Of Erk2 Complex With Kim Peptide		6e-04
2erk_A	365	Phosphorylated Map Kinase Erk2 Length = 365		6e-04
3o71_A	358	Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length		6e-04
4fv6_A	360	Crystal Structure Of The Erk2 Complexed With E57 Le		6e-04
1wzy_A	368	Crystal Structure Of Human Erk2 Complexed With A Py		6e-04
1tvo_A	368	The Structure Of Erk2 In Complex With A Small Molec		6e-04
2i0v_A	335	C-Fms Tyrosine Kinase In Complex With A Quinolone I		6e-04
3gp0_A	348	Crystal Structure Of Human Mitogen Activated Protei		7e-04
2ozo_A	613	Autoinhibited Intact Human Zap-70 Length = 613		7e-04
3nie_A	429	Crystal Structure Of Pf11_0147 Length = 429		7e-04
2vz6_A	313	Structure Of Human Calcium Calmodulin Dependent Pro		7e-04
2jav_A	279	Human Kinase With Pyrrole-Indolinone Ligand Length		7e-04
3mdy_A	337	Crystal Structure Of The Cytoplasmic Domain Of The		7e-04
2psq_A	370	Crystal Structure Of Unphosphorylated Unactivated W		7e-04
1gjo_A	316	The Fgfr2 Tyrosine Kinase Domain Length = 316		7e-04
3ri1_A	313	Crystal Structure Of The Catalytic Domain Of Fgfr2		7e-04
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		7e-04
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		7e-04
2q0b_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		7e-04
2py3_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		7e-04
2pzp_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		8e-04
3cly_A	334	Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase		8e-04
2pz5_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		8e-04
2pvf_A	334	Crystal Structure Of Tyrosine Phosphorylated Activa		8e-04
2pwl_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		8e-04
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		8e-04
3qup_A	323	Inhibitor Bound Structure Of The Kinase Domain Of T		8e-04
3n9x_A	432	Crystal Structure Of Map Kinase From Plasmodium Ber		8e-04
4h3q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		8e-04
3b2t_A	311	Structure Of Phosphotransferase Length = 311		8e-04
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		8e-04
3gqi_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		9e-04
3gc8_A	370	The Structure Of P38beta C162s In Complex With A Di		9e-04
2zoq_A	382	Structural Dissection Of Human Mitogen-Activated Ki		9e-04
3ocb_A	341	Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor		9e-04
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		9e-04
3cqu_A	342	Crystal Structure Of Akt-1 Complexed With Substrate		9e-04
4gt4_A	308	Structure Of Unliganded, Inactive Ror2 Kinase Domai		9e-04
4gv1_A	340	Pkb Alpha In Complex With Azd5363 Length = 340		9e-04
3gc9_A	370	The Structure Of P38beta C119s, C162s In Complex Wi		9e-04
3cjf_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		9e-04
1fgk_A	310	Crystal Structure Of The Tyrosine Kinase Domain Of		9e-04
3tt0_A	382	Co-Structure Of Fibroblast Growth Factor Receptor 1		9e-04
3js2_A	317	Crystal Structure Of Minimal Kinase Domain Of Fibro		9e-04
1y8g_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		9e-04

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           L W     I QG   G+ +L E      IH+D+K++NILLDE   +KISDFGLAR   K 
Sbjct: 121 LSWHXRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARASEKF 177
Query: 85  DLEANTNRIVGT 96
                 +RIVGT
Sbjct: 178 AQXVXXSRIVGT 189

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           L W     I QG   G+ +L E      IH+D+K++NILLDE   +KISDFGLAR   K 
Sbjct: 130 LSWHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARASEKF 186
Query: 85  DLEANTNRIVGT 96
                 +RIVGT
Sbjct: 187 AQTVMXSRIVGT 198

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           L W     I QG   G+ +L E      IH+D+K++NILLDE   +KISDFGLAR   K 
Sbjct: 130 LSWHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARASEKF 186
Query: 85  DLEANTNRIVGT 96
                  RIVGT
Sbjct: 187 AQTVMXXRIVGT 198

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           L W     I QG   G+ +L E      IH+D+K++NILLDE   +KISDFGLAR   K 
Sbjct: 124 LSWHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARASEKF 180
Query: 85  DLEANTNRIVGT 96
                  RIVGT
Sbjct: 181 AQXVMXXRIVGT 192

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 19  PIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           P  +  LDW     I  G  +GL YL ++    +IH+D+KA+NILLDE+ ++ + DFGLA
Sbjct: 130 PESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLA 189
Query: 79  RIF 81
           ++ 
Sbjct: 190 KLM 192

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 19  PIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           P  +  LDW     I  G  +GL YL ++    +IH+D+KA+NILLDE+ ++ + DFGLA
Sbjct: 122 PESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLA 181
Query: 79  RIF 81
           ++ 
Sbjct: 182 KLM 184

>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase Domain From Human Length = 314

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 13/104 (12%)
Query: 7   VQLYLYLIFD-----VDPIRRFILDWKTCIHIIQGITQGLLYLQE--------YSKLIVI 53
           V+L+L   F       D ++  I+ W    H+ + +++GL YL E          K  + 
Sbjct: 86  VELWLITAFHDKGSLTDYLKGNIITWNELCHVAETMSRGLSYLHEDVPWCRGEGHKPSIA 145
Query: 54  HQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGTQ 97
           H+D K+ N+LL  DL + ++DFGLA  F       +T+  VGT+
Sbjct: 146 HRDFKSKNVLLKSDLTAVLADFGLAVRFEPGKPPGDTHGQVGTR 189

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           + +++GI  G+ YL   S +  +H+DL A NIL++ +L  K+SDFGLAR+   D   A T
Sbjct: 150 VGMLRGIASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLARVLEDDPEAAYT 206
Query: 91  NR 92
            R
Sbjct: 207 TR 208

>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a) Kinase Domain In Complex With Dorsomorphin Length = 322

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 18  DPIRRFILDWKTCIHIIQGITQGLLYLQE-------YSKLIVIHQDLKASNILLDEDLKS 70
           D ++  ++ W    HI + + +GL YL E         K  + H+D+K+ N+LL  +L +
Sbjct: 111 DFLKANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTA 170
Query: 71  KISDFGLARIFVKDDLEANTNRIVGTQ 97
            I+DFGLA  F       +T+  VGT+
Sbjct: 171 CIADFGLALKFEAGKSAGDTHGQVGTR 197

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           + +++GI+ G+ YL   S +  +H+DL A NIL++ +L  K+SDFGL+R+   D   A T
Sbjct: 127 VGMLRGISAGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT 183
Query: 91  NR 92
            R
Sbjct: 184 TR 185

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           + +++GI  G+ YL   S +  +H+DL A NIL++ +L  K+SDFGL+R+   D   A T
Sbjct: 150 VGMLRGIASGMKYL---SDMGAVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT 206
Query: 91  NR 92
            R
Sbjct: 207 TR 208

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           + +++GI  G+ YL + S    +H+DL A NIL++ +L  K+SDFG++R+   D   A T
Sbjct: 134 VGMLRGIGSGMKYLSDMS---AVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYT 190
Query: 91  NR 92
            R
Sbjct: 191 TR 192

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 28  KTCIHIIQG-ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           +TC       I   L YL       +IH+DLK  NILL+ED+  +I+DFG A++   +  
Sbjct: 132 ETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 188
Query: 87  EANTNRIVGTQE 98
           +A  N  VGT +
Sbjct: 189 QARANSFVGTAQ 200

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 28  KTCIHIIQG-ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           +TC       I   L YL       +IH+DLK  NILL+ED+  +I+DFG A++   +  
Sbjct: 109 ETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 165
Query: 87  EANTNRIVGTQE 98
           +A  N  VGT +
Sbjct: 166 QARANXFVGTAQ 177

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 28  KTCIHIIQG-ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           +TC       I   L YL       +IH+DLK  NILL+ED+  +I+DFG A++   +  
Sbjct: 131 ETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 187
Query: 87  EANTNRIVGTQE 98
           +A  N  VGT +
Sbjct: 188 QARANSFVGTAQ 199

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 28  KTCIHIIQG-ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           +TC       I   L YL       +IH+DLK  NILL+ED+  +I+DFG A++   +  
Sbjct: 108 ETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 164
Query: 87  EANTNRIVGTQE 98
           +A  N  VGT +
Sbjct: 165 QARANXFVGTAQ 176

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 28  KTCIHIIQG-ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           +TC       I   L YL       +IH+DLK  NILL+ED+  +I+DFG A++   +  
Sbjct: 131 ETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 187
Query: 87  EANTNRIVGTQE 98
           +A  N  VGT +
Sbjct: 188 QARANXFVGTAQ 199

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           + +++GI  G+ YL   S +  +H+DL A NIL++ +L  K+SDFGL+R+   D   A T
Sbjct: 138 VGMLRGIASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT 194
Query: 91  NR 92
            R
Sbjct: 195 TR 196

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           + +++GI  G+ YL   S +  +H+DL A NIL++ +L  K+SDFGL+R+   D   A T
Sbjct: 150 VGMLRGIASGMKYL---SDMGFVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT 206
Query: 91  NR 92
            R
Sbjct: 207 TR 208

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 28  KTCIHIIQG-ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           +TC       I   L YL       +IH+DLK  NILL+ED+  +I+DFG A++   +  
Sbjct: 128 ETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 184
Query: 87  EANTNRIVGTQE 98
           +A  N  VGT +
Sbjct: 185 QARANSFVGTAQ 196

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           + +++GI  G+ YL   S +  +H+DL A NIL++ +L  K+SDFGL+R+   D   A T
Sbjct: 121 VGMLRGIASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT 177
Query: 91  NR 92
            R
Sbjct: 178 TR 179

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 28  KTCIHIIQG-ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           +TC       I   L YL       +IH+DLK  NILL+ED+  +I+DFG A++   +  
Sbjct: 106 ETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 162
Query: 87  EANTNRIVGTQE 98
           +A  N  VGT +
Sbjct: 163 QARANXFVGTAQ 174

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 28  KTCIHIIQG-ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           +TC       I   L YL       +IH+DLK  NILL+ED+  +I+DFG A++   +  
Sbjct: 129 ETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 185
Query: 87  EANTNRIVGTQE 98
           +A  N  VGT +
Sbjct: 186 QARANAFVGTAQ 197

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 28  KTCIHIIQG-ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           +TC       I   L YL       +IH+DLK  NILL+ED+  +I+DFG A++   +  
Sbjct: 107 ETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 163
Query: 87  EANTNRIVGTQE 98
           +A  N  VGT +
Sbjct: 164 QARANXFVGTAQ 175

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           + +++GI  G+ YL   S +  +H+DL A NIL++ +L  K+SDFGL+R+   D   A T
Sbjct: 121 VGMLRGIASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT 177
Query: 91  NR 92
            R
Sbjct: 178 TR 179

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 28  KTCIHIIQG-ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           +TC       I   L YL       +IH+DLK  NILL+ED+  +I+DFG A++   +  
Sbjct: 129 ETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 185
Query: 87  EANTNRIVGTQE 98
           +A  N  VGT +
Sbjct: 186 QARANXFVGTAQ 197

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 28  KTCIHIIQG-ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           +TC       I   L YL       +IH+DLK  NILL+ED+  +I+DFG A++   +  
Sbjct: 129 ETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 185
Query: 87  EANTNRIVGTQE 98
           +A  N  VGT +
Sbjct: 186 QARANXFVGTAQ 197

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           + +++GI  G+ YL   S +  +H+DL A NIL++ +L  K+SDFGL+R+   D   A T
Sbjct: 148 VGMLRGIASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT 204
Query: 91  NR 92
            R
Sbjct: 205 TR 206

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 28  KTCIHIIQG-ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           +TC       I   L YL       +IH+DLK  NILL+ED+  +I+DFG A++   +  
Sbjct: 131 ETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 187
Query: 87  EANTNRIVGTQE 98
           +A  N  VGT +
Sbjct: 188 QARANXFVGTAQ 199

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 28  KTCIHIIQG-ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           +TC       I   L YL       +IH+DLK  NILL+ED+  +I+DFG A++   +  
Sbjct: 132 ETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 188
Query: 87  EANTNRIVGTQE 98
           +A  N  VGT +
Sbjct: 189 QARANXFVGTAQ 200

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           + +++GI  G+ YL   S +  +H+DL A NIL++ +L  K+SDFGL+R+   D   A T
Sbjct: 150 VGMLRGIASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT 206
Query: 91  NR 92
            R
Sbjct: 207 TR 208

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           + +++GI  G+ YL   S +  +H+DL A NIL++ +L  K+SDFGL+R+   D   A T
Sbjct: 150 VGMLRGIASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT 206
Query: 91  NR 92
            R
Sbjct: 207 TR 208

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 28  KTCIHIIQG-ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           +TC       I   L YL       +IH+DLK  NILL+ED+  +I+DFG A++   +  
Sbjct: 129 ETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 185
Query: 87  EANTNRIVGTQE 98
           +A  N  VGT +
Sbjct: 186 QARANXFVGTAQ 197

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 28  KTCIHIIQG-ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           +TC       I   L YL       +IH+DLK  NILL+ED+  +I+DFG A++   +  
Sbjct: 131 ETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 187
Query: 87  EANTNRIVGTQE 98
           +A  N  VGT +
Sbjct: 188 QARANXFVGTAQ 199

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 28  KTCIHIIQG-ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           +TC       I   L YL       +IH+DLK  NILL+ED+  +I+DFG A++   +  
Sbjct: 134 ETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 190
Query: 87  EANTNRIVGTQE 98
           +A  N  VGT +
Sbjct: 191 QARANXFVGTAQ 202

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 28  KTCIHIIQG-ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           +TC       I   L YL       +IH+DLK  NILL+ED+  +I+DFG A++   +  
Sbjct: 131 ETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 187
Query: 87  EANTNRIVGTQE 98
           +A  N  VGT +
Sbjct: 188 QARANXFVGTAQ 199

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 28  KTCIHIIQG-ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           +TC       I   L YL       +IH+DLK  NILL+ED+  +I+DFG A++   +  
Sbjct: 136 ETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 192
Query: 87  EANTNRIVGTQE 98
           +A  N  VGT +
Sbjct: 193 QARANXFVGTAQ 204

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           + +++GI  G+ YL   S +  +H+DL A NIL++ +L  K+SDFGL+R+   D   A T
Sbjct: 150 VGMLRGIASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT 206
Query: 91  NR 92
            R
Sbjct: 207 TR 208

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           + +++GI  G+ YL   S +  +H+DL A NIL++ +L  K+SDFGL+R+   D   A T
Sbjct: 150 VGMLRGIASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT 206
Query: 91  NR 92
            R
Sbjct: 207 TR 208

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 28  KTCIHIIQG-ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           +TC       I   L YL       +IH+DLK  NILL+ED+  +I+DFG A++   +  
Sbjct: 131 ETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 187
Query: 87  EANTNRIVGTQE 98
           +A  N  VGT +
Sbjct: 188 QARANXFVGTAQ 199

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 28  KTCIHIIQG-ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           +TC       I   L YL       +IH+DLK  NILL+ED+  +I+DFG A++   +  
Sbjct: 128 ETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 184
Query: 87  EANTNRIVGTQE 98
           +A  N  VGT +
Sbjct: 185 QARANXFVGTAQ 196

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           + +++GI  G+ YL   S +  +H+DL A NIL++ +L  K+SDFGL+R+   D   A T
Sbjct: 150 VGMLRGIASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT 206
Query: 91  NR 92
            R
Sbjct: 207 TR 208

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 28  KTCIHIIQG-ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           +TC       I   L YL       +IH+DLK  NILL+ED+  +I+DFG A++   +  
Sbjct: 113 ETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 169
Query: 87  EANTNRIVGTQE 98
           +A  N  VGT +
Sbjct: 170 QARANXFVGTAQ 181

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           + +++GI  G+ YL   S +  +H+DL A NIL++ +L  K+SDFGL R+   D   A T
Sbjct: 150 VGMLRGIASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYT 206
Query: 91  NR 92
            R
Sbjct: 207 TR 208

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           + +++GI  G+ YL + S    +H+DL A NIL++ +L  K+SDFG++R+   D   A T
Sbjct: 113 VGMLRGIGSGMKYLSDMS---YVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYT 169
Query: 91  NR 92
            R
Sbjct: 170 TR 171

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           + +++GI  G+ YL + S    +H+DL A NIL++ +L  K+SDFG++R+   D   A T
Sbjct: 119 VGMLRGIGSGMKYLSDMS---YVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYT 175
Query: 91  NR 92
            R
Sbjct: 176 TR 177

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           + +++G+  G+ YL   S L  +H+DL A N+L+D +L  K+SDFGL+R+   D   A T
Sbjct: 154 VGMLRGVGAGMRYL---SDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAXT 210
Query: 91  N 91
Sbjct: 211 T 211

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 41/58 (70%), Gaps = 4/58 (6%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           + +++GI  G+ YL   + +  +H+DL A NIL++ +L  K+SDFGL+R+ ++DD EA
Sbjct: 148 VGMLRGIAAGMRYL---ADMGYVHRDLAARNILVNSNLVCKVSDFGLSRV-IEDDPEA 201

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 41/58 (70%), Gaps = 4/58 (6%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           + +++G+  G+ YL   S L  +H+DL A N+L+D +L  K+SDFGL+R+ ++DD +A
Sbjct: 154 VGMLRGVGAGMRYL---SDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRV-LEDDPDA 207

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 41/59 (69%), Gaps = 4/59 (6%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEAN 89
           + +++GI  G+ YL   + +  +H+DL A NIL++ +L  K+SDFGL+R+ ++DD EA 
Sbjct: 150 VGMLRGIAAGMKYL---ANMNYVHRDLAARNILVNSNLVCKVSDFGLSRV-LEDDPEAT 204

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           + +++GI  G+ YL E S    +H+DL A NIL++ +L  K+SDFGL+R   ++  +   
Sbjct: 121 VGMLRGIASGMRYLAEMS---YVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTE 177
Query: 91  NRIVGTQ 97
              +G +
Sbjct: 178 TSSLGGK 184

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           + +++GI  G+ YL E S    +H+DL A NIL++ +L  K+SDFGL+R   ++  +   
Sbjct: 119 VGMLRGIASGMRYLAEMS---YVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTY 175
Query: 91  NRIVGTQ 97
              +G +
Sbjct: 176 TSSLGGK 182

>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Pp1 Length = 314

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           I+QG+ YL E S   ++H+DL A NIL+ E  K KISDFGL+R   ++D
Sbjct: 159 ISQGMQYLAEMS---LVHRDLAARNILVAEGRKMKISDFGLSRDVYEED 204

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 9/70 (12%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           + +L+W  C+ I     +G++YL+E     ++H+DL A N+L+      KI+DFGLAR+ 
Sbjct: 140 QLLLNW--CVQI----AKGMMYLEERR---LVHRDLAARNVLVKSPNHVKITDFGLARLL 190
Query: 82  VKDDLEANTN 91
             D+ E N +
Sbjct: 191 EGDEKEYNAD 200

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 9/70 (12%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           + +L+W  C+ I     +G++YL+E     ++H+DL A N+L+      KI+DFGLAR+ 
Sbjct: 117 QLLLNW--CVQI----AKGMMYLEERR---LVHRDLAARNVLVKSPNHVKITDFGLARLL 167
Query: 82  VKDDLEANTN 91
             D+ E N +
Sbjct: 168 EGDEKEYNAD 177

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           + +++GI  G+ YL + +    +H+DL A NIL++ +L  K+SDFGL+R F++DD    T
Sbjct: 138 VGMLRGIAAGMKYLADMN---YVHRDLAARNILVNSNLVCKVSDFGLSR-FLEDDTSDPT 193

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + W+  + I  G  +GL YL   +   +IH+D+K+ NILLDE+   KI+DFG+++
Sbjct: 136 MSWEQRLEICIGAARGLHYLHTRA---IIHRDVKSINILLDENFVPKITDFGISK 187

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + W+  + I  G  +GL YL   +   +IH+D+K+ NILLDE+   KI+DFG+++
Sbjct: 136 MSWEQRLEICIGAARGLHYLHTRA---IIHRDVKSINILLDENFVPKITDFGISK 187

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           I+QG+ YL E   + ++H+DL A NIL+ E  K KISDFGL+R   ++D
Sbjct: 159 ISQGMQYLAE---MKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEED 204

>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           I+QG+ YL E   + ++H+DL A NIL+ E  K KISDFGL+R   ++D
Sbjct: 159 ISQGMQYLAE---MKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEED 204

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           I I +   QG+ YL   S   +IH+DLK++NI L EDL  KI DFGLA +
Sbjct: 135 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATV 181

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I +G+ Y++  +    IH+DL+A+N+L+ E L  KI+DFGLAR+   ++  A
Sbjct: 118 IAEGMAYIERKN---YIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTA 166

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           I I +   QG+ YL   S   +IH+DLK++NI L EDL  KI DFGLA +
Sbjct: 134 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATV 180

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEAN 89
           I  G+ Y++   ++  +H+DL+A+NIL+ E+L  K++DFGLAR+   ++  A 
Sbjct: 112 IASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTAR 161

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           I I +   QG+ YL   S   +IH+DLK++NI L EDL  KI DFGLA +
Sbjct: 107 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATV 153

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I +G+ Y++  +    IH+DL+A+N+L+ E L  KI+DFGLAR+   ++  A
Sbjct: 119 IAEGMAYIERKN---YIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTA 167

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEAN 89
           I  G+ Y++   ++  +H+DL+A+NIL+ E+L  K++DFGLAR+   ++  A 
Sbjct: 116 IASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTAR 165

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           I I +   QG+ YL   S   +IH+DLK++NI L EDL  KI DFGLA +
Sbjct: 112 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATV 158

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEAN 89
           I  G+ Y++   ++  +H+DL+A+NIL+ E+L  K++DFGLAR+   ++  A 
Sbjct: 113 IASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEXTAR 162

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           I I +   QG+ YL   S   +IH+DLK++NI L EDL  KI DFGLA +
Sbjct: 107 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATV 153

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           I I +   QG+ YL   S   +IH+DLK++NI L EDL  KI DFGLA +
Sbjct: 109 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATV 155

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEAN 89
           I  G+ Y++   ++  +H+DL+A+NIL+ E+L  K++DFGLAR+   ++  A 
Sbjct: 114 IASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTAR 163

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           I I +   QG+ YL   S   +IH+DLK++NI L EDL  KI DFGLA +
Sbjct: 112 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATV 158

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEAN 89
           I  G+ Y++   ++  +H+DL+A+NIL+ E+L  K++DFGLAR+   ++  A 
Sbjct: 123 IASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTAR 172

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEAN 89
           I  G+ Y++   ++  +H+DL+A+NIL+ E+L  K++DFGLAR+   ++  A 
Sbjct: 123 IASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTAR 172

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEAN 89
           I  G+ Y++   ++  +H+DL+A+NIL+ E+L  K++DFGLAR+   ++  A 
Sbjct: 123 IASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTAR 172

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEAN 89
           I  G+ Y++   ++  +H+DL+A+NIL+ E+L  K++DFGLAR+   ++  A 
Sbjct: 123 IASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTAR 172

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEAN 89
           I  G+ Y++   ++  +H+DL+A+NIL+ E+L  K++DFGLAR+   ++  A 
Sbjct: 120 IASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTAR 169

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEAN 89
           I  G+ Y++   ++  +H+DL+A+NIL+ E+L  K++DFGLAR+   ++  A 
Sbjct: 123 IASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTAR 172

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEAN 89
           I  G+ Y++   ++  +H+DL+A+NIL+ E+L  K++DFGLAR+   ++  A 
Sbjct: 123 IASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEXTAR 172

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEAN 89
           I  G+ Y++   ++  +H+DL+A+NIL+ E+L  K++DFGLAR+   ++  A 
Sbjct: 123 IASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTAR 172

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           +R +   +T + +   + +G+ YL+E S   VIH+DL A N L+ E+   K+SDFG+ R 
Sbjct: 96  QRGLFAAETLLGMCLDVCEGMAYLEEAS---VIHRDLAARNCLVGENQVIKVSDFGMTRF 152
Query: 81  FVKDDLEANTN 91
            + D   ++T 
Sbjct: 153 VLDDQYTSSTG 163

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEAN 89
           I  G+ Y++   ++  +H+DL+A+NIL+ E+L  K++DFGLAR+   ++  A 
Sbjct: 120 IASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEWTAR 169

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           I I +   QG+ YL   S   +IH+DLK++NI L EDL  KI DFGLA
Sbjct: 135 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLA 179

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           I I +   QG+ YL   S   +IH+DLK++NI L EDL  KI DFGLA
Sbjct: 127 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLA 171

>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor Length = 269

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 40  GLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           G++YL     + + H+D+K  N+LLDE    KISDFGLA +F  ++ E   N++ GT
Sbjct: 117 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 170

>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 40  GLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           G++YL     + + H+D+K  N+LLDE    KISDFGLA +F  ++ E   N++ GT
Sbjct: 117 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 170

>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 40  GLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           G++YL     + + H+D+K  N+LLDE    KISDFGLA +F  ++ E   N++ GT
Sbjct: 117 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 170

>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017 Length = 268

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 40  GLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           G++YL     + + H+D+K  N+LLDE    KISDFGLA +F  ++ E   N++ GT
Sbjct: 116 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 169

>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 40  GLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           G++YL     + + H+D+K  N+LLDE    KISDFGLA +F  ++ E   N++ GT
Sbjct: 117 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 170

>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 40  GLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           G++YL     + + H+D+K  N+LLDE    KISDFGLA +F  ++ E   N++ GT
Sbjct: 116 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 169

>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 40  GLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           G++YL     + + H+D+K  N+LLDE    KISDFGLA +F  ++ E   N++ GT
Sbjct: 116 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 169

>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 40  GLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           G++YL     + + H+D+K  N+LLDE    KISDFGLA +F  ++ E   N++ GT
Sbjct: 117 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 170

>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 40  GLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           G++YL     + + H+D+K  N+LLDE    KISDFGLA +F  ++ E   N++ GT
Sbjct: 116 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 169

>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1 Length = 278

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 40  GLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           G++YL     + + H+D+K  N+LLDE    KISDFGLA +F  ++ E   N++ GT
Sbjct: 115 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 168

>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding Site Length = 271

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 40  GLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           G++YL     + + H+D+K  N+LLDE    KISDFGLA +F  ++ E   N++ GT
Sbjct: 116 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 169

>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994 Length = 269

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 40  GLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           G++YL     + + H+D+K  N+LLDE    KISDFGLA +F  ++ E   N++ GT
Sbjct: 116 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 169

>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           +  G++YL     + + H+D+K  N+LLDE    KISDFGLA +F  ++ E   N++ GT
Sbjct: 114 LMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 170

>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint Kinase Inhibitors - Hit To Lead Exploration Length = 276

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 40  GLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           G++YL     + + H+D+K  N+LLDE    KISDFGLA +F  ++ E   N++ GT
Sbjct: 117 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 170

>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 40  GLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           G++YL     + + H+D+K  N+LLDE    KISDFGLA +F  ++ E   N++ GT
Sbjct: 116 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 169

>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation And Specifity Of A Ste20p Map3k Length = 348

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNR 92
           +  G  QGL YL  ++   +IH+D+KA NILL E    K+ DFG A I       A  N 
Sbjct: 159 VTHGALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSASIM------APANX 209
Query: 93  IVGT 96
            VGT
Sbjct: 210 FVGT 213

>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure Length = 309

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNR 92
           +  G  QGL YL  ++   +IH+D+KA NILL E    K+ DFG A I       A  N 
Sbjct: 120 VTHGALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSASIM------APANX 170
Query: 93  IVGTQESYNLWKDGKGRKLMDPS-LDDTHSSWKL-LTCLQIA 132
            VGT      W   +    MD    D     W L +TC+++A
Sbjct: 171 FVGTP----YWMAPEVILAMDEGQYDGKVDVWSLGITCIELA 208

>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human Chk1 Kinase Domain Length = 273

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 40  GLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           G++YL     + + H+D+K  N+LLDE    KISDFGLA +F  ++ E   N++ GT
Sbjct: 116 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 169

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           I I +   QG+ YL   S   +IH+DLK++NI L EDL  KI DFGLA
Sbjct: 107 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLA 151

>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 40  GLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           G++YL     + + H+D+K  N+LLDE    KISDFGLA +F  ++ E   N++ GT
Sbjct: 116 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGT 169

>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 40  GLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           G++YL     + + H+D+K  N+LLDE    KISDFGLA +F  ++ E   N++ GT
Sbjct: 116 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGT 169

>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 40  GLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           G++YL     + + H+D+K  N+LLDE    KISDFGLA +F  ++ E   N++ GT
Sbjct: 116 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGT 169

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I +G+ +++E +    IH+DL+A+NIL+ + L  KI+DFGLAR+   ++  A
Sbjct: 118 IAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTA 166

>pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 40  GLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           G++YL     + + H+D+K  N+LLDE    KISDFGLA +F  ++ E   N++ GT
Sbjct: 116 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGT 169

>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 40  GLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           G++YL     + + H+D+K  N+LLDE    KISDFGLA +F  ++ E   N++ GT
Sbjct: 117 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGT 170

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I +G+ +++E +    IH+DL+A+NIL+ + L  KI+DFGLAR+   ++  A
Sbjct: 120 IAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTA 168

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I +G+ +++E +    IH+DL+A+NIL+ + L  KI+DFGLAR+   ++  A
Sbjct: 124 IAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTA 172

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I +G+ +++E +    IH+DL+A+NIL+ + L  KI+DFGLAR+   ++  A
Sbjct: 119 IAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTA 167

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I +G+ +++E +    IH+DL+A+NIL+ + L  KI+DFGLAR+   ++  A
Sbjct: 123 IAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTA 171

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I +G+ +++E +    IH+DL+A+NIL+ + L  KI+DFGLAR+   ++  A
Sbjct: 118 IAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTA 166

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I +G+ +++E +    IH+DL+A+NIL+ + L  KI+DFGLAR+   ++  A
Sbjct: 118 IAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTA 166

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I +G+ +++E +    IH+DL+A+NIL+ + L  KI+DFGLAR+   ++  A
Sbjct: 127 IAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTA 175

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I +G+ +++E +    IH+DL+A+NIL+ + L  KI+DFGLAR+   ++  A
Sbjct: 124 IAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTA 172

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I +G+ +++E +    IH+DL+A+NIL+ + L  KI+DFGLAR+   ++  A
Sbjct: 128 IAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTA 176

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I +G+ +++E +    IH+DL+A+NIL+ + L  KI+DFGLAR+   ++  A
Sbjct: 126 IAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTA 174

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I +G+ +++E +    IH+DL+A+NIL+ + L  KI+DFGLAR+   ++  A
Sbjct: 113 IAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTA 161

>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain Length = 290

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 24  ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL-ARIFV 82
           +LD  T   I++ + +GL YL +  +   IH+D+KA NILL ED   +I+DFG+ A +  
Sbjct: 112 VLDESTIATILREVLEGLEYLHKNGQ---IHRDVKAGNILLGEDGSVQIADFGVSAFLAT 168
Query: 83  KDDLEANTNR--IVGT 96
             D+  N  R   VGT
Sbjct: 169 GGDITRNKVRKTFVGT 184

>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target Length = 303

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 24  ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL-ARIFV 82
           +LD  T   I++ + +GL YL +  +   IH+D+KA NILL ED   +I+DFG+ A +  
Sbjct: 117 VLDESTIATILREVLEGLEYLHKNGQ---IHRDVKAGNILLGEDGSVQIADFGVSAFLAT 173
Query: 83  KDDLEANTNR--IVGT 96
             D+  N  R   VGT
Sbjct: 174 GGDITRNKVRKTFVGT 189

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 33/44 (75%), Gaps = 3/44 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           I +G+ +++E +    IH+DL+A+NIL+ + L  KI+DFGLAR+
Sbjct: 118 IAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARL 158

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I  G+ Y++   ++  +H+DL+A+NIL+ E+L  K++DFGLAR+   ++  A
Sbjct: 289 IASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA 337

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I  G+ Y++   ++  +H+DL+A+NIL+ E+L  K++DFGLAR+   ++  A
Sbjct: 289 IASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA 337

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I  G+ Y++   ++  +H+DL+A+NIL+ E+L  K++DFGLAR+   ++  A
Sbjct: 289 IASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA 337

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEAN 89
           I  G+ Y++   ++  +H+DL A+NIL+ E+L  K++DFGLAR+   ++  A 
Sbjct: 123 IASGMAYVE---RMNYVHRDLAAANILVGENLVCKVADFGLARLIEDNEYTAR 172

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I  G+ Y++   ++  +H+DL+A+NIL+ E+L  K++DFGLAR+   ++  A
Sbjct: 372 IASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA 420

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           +R +   +T + +   + +G+ YL+E     VIH+DL A N L+ E+   K+SDFG+ R 
Sbjct: 116 QRGLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRF 172
Query: 81  FVKDDLEANTN 91
            + D   ++T 
Sbjct: 173 VLDDQYTSSTG 183

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           +R +   +T + +   + +G+ YL+E     VIH+DL A N L+ E+   K+SDFG+ R 
Sbjct: 96  QRGLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRF 152
Query: 81  FVKDDLEANTN 91
            + D   ++T 
Sbjct: 153 VLDDQYTSSTG 163

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           +R +   +T + +   + +G+ YL+E     VIH+DL A N L+ E+   K+SDFG+ R 
Sbjct: 99  QRGLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRF 155
Query: 81  FVKDDLEANTN 91
            + D   ++T 
Sbjct: 156 VLDDQYTSSTG 166

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           +R +   +T + +   + +G+ YL+E     VIH+DL A N L+ E+   K+SDFG+ R 
Sbjct: 94  QRGLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRF 150
Query: 81  FVKDDLEANTN 91
            + D   ++T 
Sbjct: 151 VLDDQYTSSTG 161

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNR 92
           I+Q   +GL YL    K   IH+D+KA NILL+ +  +K++DFG+A      D  A  N 
Sbjct: 130 ILQSTLKGLEYLHFMRK---IHRDIKAGNILLNTEGHAKLADFGVAGQLT--DXMAKRNX 184
Query: 93  IVGT 96
           ++GT
Sbjct: 185 VIGT 188

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           + +++GI  G+ YL + +    +H+ L A NIL++ +L  K+SDFGL+R F++DD    T
Sbjct: 112 VGMLRGIAAGMKYLADMN---YVHRALAARNILVNSNLVCKVSDFGLSR-FLEDDTSDPT 167

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           +R +   +T + +   + +G+ YL+E     VIH+DL A N L+ E+   K+SDFG+ R 
Sbjct: 97  QRGLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRF 153
Query: 81  FVKDDLEANTN 91
            + D   ++T 
Sbjct: 154 VLDDQYTSSTG 164

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           LD K    + Q I  G+ Y   +   +V+H+DLK  N+LLD  + +KI+DFGL+ +
Sbjct: 113 LDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNM 165

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I +G+ +++E +    IH++L+A+NIL+ + L  KI+DFGLAR+   ++  A
Sbjct: 114 IAEGMAFIEERN---YIHRNLRAANILVSDTLSCKIADFGLARLIEDNEYTA 162

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
            + K  I I +   +G+ YL   S   +IH+DLK++NI L ED   KI DFGLA +
Sbjct: 105 FEMKKLIDIARQTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATV 157

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I +G+ ++++ +    IH+DL+A+NIL+   L  KI+DFGLAR+   ++  A
Sbjct: 120 IAEGMAFIEQRN---YIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTA 168

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I +G+ ++++ +    IH+DL+A+NIL+   L  KI+DFGLAR+   ++  A
Sbjct: 293 IAEGMAFIEQRN---YIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTA 341

>pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           LD      I++ I +GL YL    K   IH+D+KA+N+LL E  + K++DFG+A      
Sbjct: 116 LDETQIATILREILKGLDYLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVAGQLT-- 170
Query: 85  DLEANTNRIVGT 96
           D +   N  VGT
Sbjct: 171 DTQIKRNXFVGT 182

>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 635

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           K  I ++  ++ G+ YL+E +    +H+DL A N+LL     +KISDFGL++    D+
Sbjct: 469 KNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADE 523

>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 636

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           K  I ++  ++ G+ YL+E +    +H+DL A N+LL     +KISDFGL++    D+
Sbjct: 470 KNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADE 524

>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           LD      I++ I +GL YL    K   IH+D+KA+N+LL E  + K++DFG+A      
Sbjct: 121 LDETQIATILREILKGLDYLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVAGQLT-- 175
Query: 85  DLEANTNRIVGT 96
           D +   N  VGT
Sbjct: 176 DTQIKRNTFVGT 187

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 3/47 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVK 83
           I +G+ ++++ +    IH+DL+A+NIL+   L  KI+DFGLAR+  K
Sbjct: 287 IAEGMAFIEQRN---YIHRDLRAANILVSASLVCKIADFGLARVGAK 330

>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) In Complex With Staurosporine Length = 304

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           LD      I++ I +GL YL    K   IH+D+KA+N+LL E  + K++DFG+A      
Sbjct: 101 LDETQIATILREILKGLDYLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVAGQLT-- 155
Query: 85  DLEANTNRIVGT 96
           D +   N  VGT
Sbjct: 156 DTQIKRNXFVGT 167

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           I  G+ Y++   ++  +H+DL+A+NIL+ E+L  K++DFGL R+   ++  A
Sbjct: 290 IASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLGRLIEDNEYTA 338

>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           LD      I++ I +GL YL    K   IH+D+KA+N+LL E  + K++DFG+A      
Sbjct: 101 LDETQIATILREILKGLDYLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVAGQLTDT 157
Query: 85  DLEANTNRIVGT 96
            ++ NT   VGT
Sbjct: 158 QIKRNT--FVGT 167

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR---IFVKDDL 86
           +H    + +G+ YL   S+   IH+DL A NIL+ E+  +KI+DFGL+R   ++VK  +
Sbjct: 135 LHFAADVARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTM 190

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR---IFVKDDL 86
           +H    + +G+ YL   S+   IH+DL A NIL+ E+  +KI+DFGL+R   ++VK  +
Sbjct: 145 LHFAADVARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTM 200

>pdb|3TUB|A Chain A, Crystal Structure Of Syk Kinase Domain With 1-(5-(6,7- Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-3-((1r,2s)-2- Phenylcyclopropyl)urea Length = 293

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           K  I ++  ++ G+ YL+E +    +H+DL A N+LL     +KISDFGL++    D+
Sbjct: 127 KNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADE 181

>pdb|3VF8|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic Domain With Pyrazolylbenzimidazole Inhibitor 416 Length = 299

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           K  I ++  ++ G+ YL+E +    +H+DL A N+LL     +KISDFGL++    D+
Sbjct: 127 KNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADE 181

>pdb|4DFL|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With A Sulfonamidopyrazine Piperidine Inhibitor Length = 274

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           K  I ++  ++ G+ YL+E +    +H+DL A N+LL     +KISDFGL++    D+
Sbjct: 107 KNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADE 161

>pdb|3EMG|A Chain A, Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylaminopyrimidines As Potent Inhibitors Of Spleen Tyrosine Kinase (Syk) Length = 291

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           K  I ++  ++ G+ YL+E +    +H+DL A N+LL     +KISDFGL++    D+
Sbjct: 125 KNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADE 179

>pdb|1XBA|A Chain A, Crystal Structure Of Apo Syk Tyrosine Kinase Domain Length = 291

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           K  I ++  ++ G+ YL+E +    +H+DL A N+LL     +KISDFGL++    D+
Sbjct: 117 KNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADE 171

>pdb|3SRV|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           K  I ++  ++ G+ YL+E +    +H+DL A N+LL     +KISDFGL++    D+
Sbjct: 111 KNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADE 165

>pdb|3SRV|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           K  I ++  ++ G+ YL+E +    +H+DL A N+LL     +KISDFGL++    D+
Sbjct: 111 KNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADE 165

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
            + K  I I +   +G+ YL   S   +IH+DLK++NI L ED   KI DFGLA
Sbjct: 117 FEMKKLIDIARQTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLA 167

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
            + K  I I +   +G+ YL   S   +IH+DLK++NI L ED   KI DFGLA
Sbjct: 117 FEMKKLIDIARQTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLA 167

>pdb|4F4P|A Chain A, Syk In Complex With Ligand Lasw836 Length = 273

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           K  I ++  ++ G+ YL+E +    +H+DL A N+LL     +KISDFGL++    D+
Sbjct: 105 KNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADE 159

>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A Benzolactam-Derived Inhibitor Length = 333

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           RR  L      + ++ I  G  YL       VIH+DLK  N+ L+EDL+ KI DFGLA
Sbjct: 132 RRKALTEPEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLA 186

>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 315

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           RR  L      + ++ I  G  YL       VIH+DLK  N+ L+EDL+ KI DFGLA
Sbjct: 114 RRKALTEPEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLA 168

>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With Nms-P937 Length = 311

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           RR  L      + ++ I  G  YL       VIH+DLK  N+ L+EDL+ KI DFGLA
Sbjct: 110 RRKALTEPEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLA 164

>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like Kinase 1 Length = 335

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           RR  L      + ++ I  G  YL       VIH+DLK  N+ L+EDL+ KI DFGLA
Sbjct: 134 RRKALTEPEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLA 188

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 32/43 (74%), Gaps = 3/43 (6%)
Query: 39  QGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           QGL YL ++    ++H+DLK +N+LLDE+   K++DFGLA+ F
Sbjct: 123 QGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLAKSF 162

>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 311

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           RR  L      + ++ I  G  YL       VIH+DLK  N+ L+EDL+ KI DFGLA
Sbjct: 110 RRKALTEPEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLA 164

>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 7 Activated Mutant (S287d, T291d) Length = 318

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           I + L YL+E  K  VIH+D+K SNILLDE  + K+ DFG++   V D
Sbjct: 133 IVKALYYLKE--KHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDD 178

>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536 Length = 294

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           RR  L      + ++ I  G  YL       VIH+DLK  N+ L+EDL+ KI DFGLA
Sbjct: 108 RRKALTEPEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLA 162

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           H +  I  G+LYL  +    ++H+DL  SN+LL  ++  KI+DFGLA
Sbjct: 116 HFMHQIITGMLYLHSHG---ILHRDLTLSNLLLTRNMNIKIADFGLA 159

>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex With An Mkk5 Binding Fragment Length = 442

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 3/43 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + +GL Y+       VIH+DLK SN+L++E+ + KI DFG+AR
Sbjct: 168 LLRGLKYMHSAQ---VIHRDLKPSNLLVNENCELKIGDFGMAR 207

>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182 Length = 353

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTN 91
           HI   I Q L  ++      VIH+DLK SN+L++ +   K+ DFGLARI   D+  A+ +
Sbjct: 113 HIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARII--DESAADNS 170
Query: 92  RIVGTQ 97
              G Q
Sbjct: 171 EPTGQQ 176

>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7 Length = 353

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTN 91
           HI   I Q L  ++      VIH+DLK SN+L++ +   K+ DFGLARI   D+  A+ +
Sbjct: 113 HIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARII--DESAADNS 170
Query: 92  RIVGTQ 97
              G Q
Sbjct: 171 EPTGQQ 176

>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3 Length = 353

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTN 91
           HI   I Q L  ++      VIH+DLK SN+L++ +   K+ DFGLARI   D+  A+ +
Sbjct: 113 HIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARII--DESAADNS 170
Query: 92  RIVGTQ 97
              G Q
Sbjct: 171 EPTGQQ 176

>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNR 92
           I++ I +GL YL    K   IH+D+KA+N+LL E    K++DFG+A      D +   N 
Sbjct: 121 ILREILKGLDYLHSERK---IHRDIKAANVLLSEQGDVKLADFGVAGQLT--DTQIKRNX 175
Query: 93  IVGT 96
            VGT
Sbjct: 176 FVGT 179

>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor Length = 398

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Query: 39  QGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +GL Y+       VIH+DLK SN+L++E+ + KI DFG+AR
Sbjct: 169 RGLKYMHSAQ---VIHRDLKPSNLLVNENCELKIGDFGMAR 206

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           I I +   QG+ YL   +   +IH+D+K++NI L E L  KI DFGLA +
Sbjct: 135 IDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATV 181

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + +G+ YL E      +H+DL A N +LDE    K++DFGLAR
Sbjct: 133 VARGMEYLAEQK---FVHRDLAARNCMLDESFTVKVADFGLAR 172

>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 351

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
            ++Q +  GL Y+       ++H+D+KA+N+L+  D   K++DFGLAR F
Sbjct: 128 RVMQMLLNGLYYIHRNK---ILHRDMKAANVLITRDGVLKLADFGLARAF 174

>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And Drb Length = 373

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
            ++Q +  GL Y+       ++H+D+KA+N+L+  D   K++DFGLAR F
Sbjct: 129 RVMQMLLNGLYYIHRNK---ILHRDMKAANVLITRDGVLKLADFGLARAF 175

>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 331

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
            ++Q +  GL Y+       ++H+D+KA+N+L+  D   K++DFGLAR F
Sbjct: 129 RVMQMLLNGLYYIHRNK---ILHRDMKAANVLITRDGVLKLADFGLARAF 175

>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 Length = 331

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
            ++Q +  GL Y+       ++H+D+KA+N+L+  D   K++DFGLAR F
Sbjct: 129 RVMQMLLNGLYYIHRNK---ILHRDMKAANVLITRDGVLKLADFGLARAF 175

>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights Into Receptor Autoregulation Length = 343

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR-IFVKDDLEANTN 91
           I + +  G+ YL E      +H+DL   N L+ E++  KI+DFGL+R I+  D  +A+ N
Sbjct: 179 IARQVAAGMAYLSERK---FVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGN 235

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           + +G+ +L+ +     IH+DL A N L+D DL  K+SDFG+ R +V DD   ++   VGT
Sbjct: 113 VCEGMAFLESHQ---FIHRDLAARNCLVDRDLCVKVSDFGMTR-YVLDDQYVSS---VGT 165
Query: 97  Q 97
           +
Sbjct: 166 K 166

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR---IFVKDDL 86
           +H    + +G+ YL   S+   IH++L A NIL+ E+  +KI+DFGL+R   ++VK  +
Sbjct: 142 LHFAADVARGMDYL---SQKQFIHRNLAARNILVGENYVAKIADFGLSRGQEVYVKKTM 197

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 4   LQTVQLYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYL--QEYSKLIVIHQDLKASN 61
           LQ V  Y+ L    D + R  +     +   Q I +G+ YL  Q Y     IH+DL A N
Sbjct: 110 LQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQHY-----IHRDLAARN 164
Query: 62  ILLDEDLKSKISDFGLAR 79
           +LLD D   KI DFGLA+
Sbjct: 165 VLLDNDRLVKIGDFGLAK 182

>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A Resolution Length = 336

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 13/82 (15%)
Query: 26  DWKTCIHIIQGITQGLLYLQ------EYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           DW +   +   +T+GL YL       ++ K  + H+DL + N+L+  D    ISDFGL+ 
Sbjct: 109 DWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLS- 167
Query: 80  IFVKDDLEANTNRIVGTQESYN 101
                 +    NR+V   E  N
Sbjct: 168 ------MRLTGNRLVRPGEEDN 183

>pdb|3H9R|A Chain A, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 330

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 25  LDWKTCIHIIQGITQGLLYLQ-----EYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           LD  +C+ I+  I  GL +L         K  + H+DLK+ NIL+ ++ +  I+D GLA 
Sbjct: 131 LDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAV 190
Query: 80  IFVK--DDLEANTNRIVGTQE 98
           +  +  + L+   N  VGT+ 
Sbjct: 191 MHSQSTNQLDVGNNPRVGTKR 211

>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex With Staurosporine Length = 287

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 9/73 (12%)
Query: 19  PIRRFILDWKTCIHI------IQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKI 72
           P+ +F++  +  I +      +  ++ G+ YL+E +    +H+DL A N+LL     +KI
Sbjct: 95  PLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKN---FVHRDLAARNVLLVNRHYAKI 151
Query: 73  SDFGLARIFVKDD 85
           SDFGL++    DD
Sbjct: 152 SDFGLSKALGADD 164

>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase Domain Of The Human Epidermal Growth Factor Receptor 3 (Her3) Length = 325

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 4   LQTVQLYLYLIFDVDPIR--RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASN 61
           LQ V  YL L   +D +R  R  L  +  ++    I +G+ YL+E+    ++H++L A N
Sbjct: 89  LQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHG---MVHRNLAARN 145
Query: 62  ILLDEDLKSKISDFGLARIFVKDD 85
           +LL    + +++DFG+A +   DD
Sbjct: 146 VLLKSPSQVQVADFGVADLLPPDD 169

>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex With Amp-Pnp Length = 344

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 4   LQTVQLYLYLIFDVDPIR--RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASN 61
           LQ V  YL L   +D +R  R  L  +  ++    I +G+ YL+E+    ++H++L A N
Sbjct: 107 LQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHG---MVHRNLAARN 163
Query: 62  ILLDEDLKSKISDFGLARIFVKDD 85
           +LL    + +++DFG+A +   DD
Sbjct: 164 VLLKSPSQVQVADFGVADLLPPDD 187

>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A Pyrimidinopyridone Inhibitor Length = 333

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 14  IFDVDP---IRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKS 70
           + + DP   I    L  +  +H    + QG+ +L   +    IH+D+ A N+LL     +
Sbjct: 147 VLETDPAFAIANSTLSTRDLLHFSSQVAQGMAFLASKN---CIHRDVAARNVLLTNGHVA 203
Query: 71  KISDFGLARIFVKDD 85
           KI DFGLAR  + D 
Sbjct: 204 KIGDFGLARDIMNDS 218

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           R  LD +  + +   + +G+ YL   +  IV H+DLK+ N+L+D+    K+ DFGL+R+
Sbjct: 131 REQLDERRRLSMAYDVAKGMNYLHNRNPPIV-HRDLKSPNLLVDKKYTVKVCDFGLSRL 188

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEA 88
           +  G+ Y++   ++  IH+DL+++NIL+   L  KI+DFGLAR+   ++  A
Sbjct: 114 VAAGMAYIE---RMNYIHRDLRSANILVGNGLICKIADFGLARLIEDNEXTA 162

>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195 Length = 365

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 135 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDXELKILDFGLAR 178

>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound Length = 279

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           V+H+DLK +N+ LD     K+ DFGLARI   D   A T   VGT
Sbjct: 137 VLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKT--FVGT 179

>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 130 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDXELKILDFGLAR 173

>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine Length = 365

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 135 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDXELKILDFGLAR 178

>pdb|3MTF|A Chain A, Crystal Structure Of The Acvr1 Kinase In Complex With A 2- Aminopyridine Inhibitor Length = 301

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 25  LDWKTCIHIIQGITQGLLYLQ-----EYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           LD  +C+ I+  I  GL +L         K  + H+DLK+ NIL+ ++ +  I+D GLA 
Sbjct: 102 LDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAV 161
Query: 80  IFVK--DDLEANTNRIVGTQE 98
           +  +  + L+   N  VGT+ 
Sbjct: 162 MHSQSTNQLDVGNNPRVGTKR 182

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 20  IRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED---LKSKISDFG 76
           I R   D     +I++ I  G+ YL +++   ++H+D+K  NILL+     L  KI DFG
Sbjct: 138 INRHKFDECDAANIMKQILSGICYLHKHN---IVHRDIKPENILLENKNSLLNIKIVDFG 194
Query: 77  LARIFVKD 84
           L+  F KD
Sbjct: 195 LSSFFSKD 202

>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl Amide Inhibitor Length = 371

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 141 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDXELKILDFGLAR 184

>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha Length = 389

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 159 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 202

>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955 Length = 350

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 128 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 171

>pdb|3HEC|A Chain A, P38 In Complex With Imatinib Length = 348

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 126 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 169

>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 349

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 127 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 170

>pdb|4DYM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex With The Imidazo[1,2-B]pyridazine Inhibitor K00135 Length = 301

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 25  LDWKTCIHIIQGITQGLLYLQ-----EYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           LD  +C+ I+  I  GL +L         K  + H+DLK+ NIL+ ++ +  I+D GLA 
Sbjct: 102 LDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAV 161
Query: 80  IFVK--DDLEANTNRIVGTQE 98
           +  +  + L+   N  VGT+ 
Sbjct: 162 MHSQSTNQLDVGNNPRVGTKR 182

>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P- Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl- Pyridin-3-Yl)naphthalen-1-Yl]urea Length = 348

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 126 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 169

>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine Length = 351

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 127 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 170

>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With Inhibitor Pg-874743 Length = 348

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 126 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 169

>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE COMPLEX IN Solution Length = 359

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 135 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 178

>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex With Dp802 Length = 354

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 130 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 173

>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex Length = 366

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 136 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 179

>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant Length = 360

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 130 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 173

>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376 Length = 354

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 130 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 173

>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With Inhibitor Pg-892579 Length = 348

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 126 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 169

>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map Kinase Length = 360

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 130 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 173

>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant Length = 360

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 130 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 173

>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant Length = 360

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 130 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 173

>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l) Activating Mutant Length = 367

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 137 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 180

>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea Length = 365

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 135 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 178

>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 359

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 129 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 172

>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain In Complex With A Monocyclic Pyrazolone Inhibitor Length = 360

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 130 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 173

>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase Length = 360

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 130 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 173

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +HI Q I  G++YL        +H+DL   N L+ E+L  KI DFG++R
Sbjct: 131 LHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKIGDFGMSR 176

>pdb|2OZA|B Chain B, Structure Of P38alpha Complex Length = 366

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 136 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 179

>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a) Activating Mutant Length = 367

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 137 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 180

>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In Complex With 4-[3-Methylsulfanylanilino]-6,7- Dimethoxyquinazoline Length = 360

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 130 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 173

>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38) Length = 360

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 130 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 173

>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The Docking Site On Its Nuclear Substrate Mef2a Length = 360

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 130 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 173

>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In Phosphorylated P38a And In Solution Length = 370

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 140 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 183

>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor Length = 383

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 153 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 196

>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase Length = 362

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 132 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 175

>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase Length = 367

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 137 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 180

>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s) Activating Mutant Form-A Length = 367

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 137 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 180

>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499 Length = 372

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 142 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 185

>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121 Length = 362

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 132 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 175

>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole Inhibitor Length = 372

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 142 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 185

>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase Length = 380

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 150 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 193

>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48 Length = 360

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 130 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 173

>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195 Length = 372

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 142 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 185

>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Pyrrole-2- Carboxamide Inhibitor Length = 371

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 141 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 184

>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1- Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3- Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide Length = 380

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 150 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 193

>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A Dihydroquinazolinone Inhibitor Length = 366

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 136 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 179

>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 130 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 173

>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk Docking Partner Length = 380

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 150 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 193

>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995 Length = 379

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 149 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 192

>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655 Length = 379

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 149 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 192

>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715 Length = 362

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 132 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 175

>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based Inhibitor Length = 383

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 153 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 196

>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum, Cgd2_1960 Length = 388

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 9/78 (11%)
Query: 11  LYLIFDV------DPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL 64
           +YL+FD         IR  IL+     +++  + + + YL       ++H+D+K SNILL
Sbjct: 86  VYLVFDYMETDLHAVIRANILEPVHKQYVVYQLIKVIKYLHSGG---LLHRDMKPSNILL 142
Query: 65  DEDLKSKISDFGLARIFV 82
           + +   K++DFGL+R FV
Sbjct: 143 NAECHVKVADFGLSRSFV 160

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 8/51 (15%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKS--------KISDFGLAR 79
           I +G+ YL + + + +IH+DLK+SNIL+ + +++        KI+DFGLAR
Sbjct: 114 IARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAR 164

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNR 92
           +++ I +GL YL    K   IH+D+KA+N+LL E    K++DFG+A       ++ NT  
Sbjct: 125 MLKEILKGLDYLHSEKK---IHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNT-- 179
Query: 93  IVGT 96
            VGT
Sbjct: 180 FVGT 183

>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2 (Erbb2). Length = 338

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 9/68 (13%)
Query: 24  ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVK 83
           +L+W  C+ I +G++    YL++     ++H+DL A N+L+      KI+DFGLAR+   
Sbjct: 121 LLNW--CMQIAKGMS----YLEDVR---LVHRDLAARNVLVKSPNHVKITDFGLARLLDI 171
Query: 84  DDLEANTN 91
           D+ E + +
Sbjct: 172 DETEYHAD 179

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           R  LD +  + +   + +G+ YL   +  IV H++LK+ N+L+D+    K+ DFGL+R+ 
Sbjct: 131 REQLDERRRLSMAYDVAKGMNYLHNRNPPIV-HRNLKSPNLLVDKKYTVKVCDFGLSRLK 189
Query: 82  VKDDLEANTNRIVGTQE 98
               L + +    GT E
Sbjct: 190 ASTFLSSKS--AAGTPE 204

>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In Complex With Sto-609 Length = 298

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 7/64 (10%)
Query: 34  IQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD-LEANTNR 92
            Q + +G+ YL  Y K  +IH+D+K SN+L+ ED   KI+DFG++  F   D L +NT  
Sbjct: 143 FQDLIKGIEYLH-YQK--IIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNT-- 197
Query: 93  IVGT 96
            VGT
Sbjct: 198 -VGT 200

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 27  WKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           W   +   + I  G+ YL   +   +IH+DL + N L+ E+    ++DFGLAR+ V +  
Sbjct: 107 WSQRVSFAKDIASGMAYLHSMN---IIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKT 163
Query: 87  EANTNR 92
           +    R
Sbjct: 164 QPEGLR 169

>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A Dihydroquinolinone Length = 366

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 136 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDSELKILDFGLAR 179

>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 132 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDSELKILDFGLAR 175

>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1 Reveals A Novel Autoinhibitory Conformation For A Dual Kinase Protein Length = 355

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 41  LLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLE 87
           +L L+   KL +I++D+K  NILLD +    ++DFGL++ FV D+ E
Sbjct: 169 VLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETE 215

>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And Kinase Domains Length = 361

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           +++L+W  C+ I +G+     YL++     ++H+DL A N+L+      KI+DFGLA++ 
Sbjct: 151 QYLLNW--CVQIAKGMN----YLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL 201
Query: 82  VKDDLEANTN 91
             ++ E +  
Sbjct: 202 GAEEKEYHAE 211

>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant Length = 327

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 51  IVIHQDLKASNILLDEDLKSKISDFGLARIFV 82
            ++H+DLKA N+LLD D+  KI+DFG +  F 
Sbjct: 133 FIVHRDLKAENLLLDADMNIKIADFGFSNEFT 164

>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Adp Length = 317

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           RR  +      + ++   QG+ YL       VIH+DLK  N+ L++D+  KI DFGLA
Sbjct: 135 RRKAVTEPEARYFMRQTIQGVQYLHNNR---VIHRDLKLGNLFLNDDMDVKIGDFGLA 189

>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase Domain And A Mig6 Peptide Length = 324

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           +++L+W  C+ I +G+     YL++     ++H+DL A N+L+      KI+DFGLA++ 
Sbjct: 114 QYLLNW--CVQIAEGMN----YLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL 164
Query: 82  VKDDLEANTN 91
             ++ E +  
Sbjct: 165 GAEEKEYHAE 174

>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: T208aS212A INACTIVE DOUBLE MUTANT Length = 327

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 51  IVIHQDLKASNILLDEDLKSKISDFGLARIFV 82
            ++H+DLKA N+LLD D+  KI+DFG +  F 
Sbjct: 133 FIVHRDLKAENLLLDADMNIKIADFGFSNEFT 164

>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Wild Type Length = 327

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 51  IVIHQDLKASNILLDEDLKSKISDFGLARIFV 82
            ++H+DLKA N+LLD D+  KI+DFG +  F 
Sbjct: 133 FIVHRDLKAENLLLDADMNIKIADFGFSNEFT 164

>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain. Length = 317

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           RR  +      + ++   QG+ YL       VIH+DLK  N+ L++D+  KI DFGLA
Sbjct: 135 RRKAVTEPEARYFMRQTIQGVQYLHNNR---VIHRDLKLGNLFLNDDMDVKIGDFGLA 189

>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: K82r Mutant Length = 327

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 51  IVIHQDLKASNILLDEDLKSKISDFGLARIFV 82
            ++H+DLKA N+LLD D+  KI+DFG +  F 
Sbjct: 133 FIVHRDLKAENLLLDADMNIKIADFGFSNEFT 164

>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1) Catalytic Domain Length = 317

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           RR  +      + ++   QG+ YL       VIH+DLK  N+ L++D+  KI DFGLA
Sbjct: 135 RRKAVTEPEARYFMRQTIQGVQYLHNNR---VIHRDLKLGNLFLNDDMDVKIGDFGLA 189

>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Compound 902 Length = 301

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           RR  +      + ++   QG+ YL       VIH+DLK  N+ L++D+  KI DFGLA
Sbjct: 119 RRKAVTEPEARYFMRQTIQGVQYLHNNR---VIHRDLKLGNLFLNDDMDVKIGDFGLA 173

>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r, T208e Double Mutant Length = 327

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 51  IVIHQDLKASNILLDEDLKSKISDFGLARIFV 82
            ++H+DLKA N+LLD D+  KI+DFG +  F 
Sbjct: 133 FIVHRDLKAENLLLDADMNIKIADFGFSNEFT 164

>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES BY Mimicking Host Substrates Length = 319

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 51  IVIHQDLKASNILLDEDLKSKISDFGLARIFV 82
            ++H+DLKA N+LLD D+  KI+DFG +  F 
Sbjct: 126 FIVHRDLKAENLLLDADMNIKIADFGFSNEFT 157

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARI 80
           ++H+DLK  N+LLDE L  KI+DFGL+ I
Sbjct: 134 IVHRDLKPENLLLDEHLNVKIADFGLSNI 162

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARI 80
           ++H+DLK  N+LLDE L  KI+DFGL+ I
Sbjct: 124 IVHRDLKPENLLLDEHLNVKIADFGLSNI 152

>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase Domain Of Csf-1r Length = 324

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           L+ +  +H    + QG+ +L   +    IH+D+ A N+LL     +KI DFGLAR  + D
Sbjct: 155 LELRDLLHFSSQVAQGMAFLASKN---CIHRDVAARNVLLTNGHVAKIGDFGLARDIMND 211
Query: 85  D 85
Sbjct: 212 S 212

>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In Complex With Amp-Pnp Length = 330

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 9/66 (13%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           +++L+W  C+ I +G+     YL++     ++H+DL A N+L+      KI+DFGLA++ 
Sbjct: 120 QYLLNW--CVQIAKGMN----YLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL 170
Query: 82  VKDDLE 87
             ++ E
Sbjct: 171 GAEEKE 176

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARI 80
           ++H+DLK  N+LLDE L  KI+DFGL+ I
Sbjct: 133 IVHRDLKPENLLLDEHLNVKIADFGLSNI 161

>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARI 80
           ++H+DLK  N+LLDE L  KI+DFGL+ I
Sbjct: 128 IVHRDLKPENLLLDEHLNVKIADFGLSNI 156

>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase Domain With Erlotinib Length = 337

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           +++L+W  C+ I +G+     YL++     ++H+DL A N+L+      KI+DFGLA++ 
Sbjct: 127 QYLLNW--CVQIAKGMN----YLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL 177
Query: 82  VKDDLEANTN 91
             ++ E +  
Sbjct: 178 GAEEKEYHAE 187

>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain (G719sT790M) IN The Apo Form Length = 334

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           +++L+W  C+ I +G+     YL++     ++H+DL A N+L+      KI+DFGLA++ 
Sbjct: 124 QYLLNW--CVQIAKGMN----YLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL 174
Query: 82  VKDDLEANTN 91
             ++ E +  
Sbjct: 175 GAEEKEYHAE 184

>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor- Gw572016 Length = 352

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 9/66 (13%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           +++L+W  C+ I +G+     YL++     ++H+DL A N+L+      KI+DFGLA++ 
Sbjct: 142 QYLLNW--CVQIAKGMN----YLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL 192
Query: 82  VKDDLE 87
             ++ E
Sbjct: 193 GAEEKE 198

>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor Receptor Length = 333

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 9/66 (13%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           +++L+W  C+ I +G+     YL++     ++H+DL A N+L+      KI+DFGLA++ 
Sbjct: 123 QYLLNW--CVQIAKGMN----YLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL 173
Query: 82  VKDDLE 87
             ++ E
Sbjct: 174 GAEEKE 179

>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 9/66 (13%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           +++L+W  C+ I +G+     YL++     ++H+DL A N+L+      KI+DFGLA++ 
Sbjct: 120 QYLLNW--CVQIAKGMN----YLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL 170
Query: 82  VKDDLE 87
             ++ E
Sbjct: 171 GAEEKE 176

>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently Binding To Wz4002 Length = 331

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           +++L+W  C+ I +G+     YL++     ++H+DL A N+L+      KI+DFGLA++ 
Sbjct: 121 QYLLNW--CVQIAKGMN----YLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL 171
Query: 82  VKDDLEANTN 91
             ++ E +  
Sbjct: 172 GAEEKEYHAE 181

>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In Complex With Amppnp Length = 334

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 9/66 (13%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           +++L+W  C+ I +G+     YL++     ++H+DL A N+L+      KI+DFGLA++ 
Sbjct: 124 QYLLNW--CVQIAKGMN----YLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL 174
Query: 82  VKDDLE 87
             ++ E
Sbjct: 175 GAEEKE 180

>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain Length = 330

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 9/66 (13%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           +++L+W  C+ I +G+     YL++     ++H+DL A N+L+      KI+DFGLA++ 
Sbjct: 120 QYLLNW--CVQIAKGMN----YLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL 170
Query: 82  VKDDLE 87
             ++ E
Sbjct: 171 GAEEKE 176

>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With Dacomitinib Length = 329

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           +++L+W  C+ I +G+     YL++     ++H+DL A N+L+      KI+DFGLA++ 
Sbjct: 119 QYLLNW--CVQIAKGMN----YLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL 169
Query: 82  VKDDLEANTN 91
             ++ E +  
Sbjct: 170 GAEEKEYHAE 179

>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An Imidazo[2,1-B]thiazole Inhibitor Length = 327

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           +++L+W  C+ I +G+     YL++     ++H+DL A N+L+      KI+DFGLA++ 
Sbjct: 117 QYLLNW--CVQIAKGMN----YLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL 167
Query: 82  VKDDLEANTN 91
             ++ E +  
Sbjct: 168 GAEEKEYHAE 177

>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s) Length = 334

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 9/66 (13%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           +++L+W  C+ I +G+     YL++     ++H+DL A N+L+      KI+DFGLA++ 
Sbjct: 124 QYLLNW--CVQIAKGMN----YLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL 174
Query: 82  VKDDLE 87
             ++ E
Sbjct: 175 GAEEKE 180

>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 34-Jab Length = 327

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           +++L+W  C+ I +G+     YL++     ++H+DL A N+L+      KI+DFGLA++ 
Sbjct: 117 QYLLNW--CVQIAKGMN----YLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL 167
Query: 82  VKDDLEANTN 91
             ++ E +  
Sbjct: 168 GAEEKEYHAE 177

>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           +++L+W  C+ I +G+     YL++     ++H+DL A N+L+      KI+DFGLA++ 
Sbjct: 120 QYLLNW--CVQIAKGMN----YLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL 170
Query: 82  VKDDLEANTN 91
             ++ E +  
Sbjct: 171 GAEEKEYHAE 180

>pdb|2PML|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp Analogue Length = 348

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 30/128 (23%)
Query: 23  FILDWK-TC---IHIIQGITQGLLYLQEY--SKLIVIHQDLKASNILLDEDLKSKISDFG 76
           F+LD   TC   I +I+ I + +L    Y  ++  + H+D+K SNIL+D++ + K+SDFG
Sbjct: 138 FVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKNGRVKLSDFG 197
Query: 77  LARIFVKDDLEANTNRIVGTQESYNLWKDGKGRKLMDPSLDDTHSS--------WKLLTC 128
            +   V         +I G++ +Y         + M P      SS        W L  C
Sbjct: 198 ESEYMV-------DKKIKGSRGTY---------EFMPPEFFSNESSYNGAKVDIWSLGIC 241
Query: 129 LQIALLCV 136
           L +    V
Sbjct: 242 LYVMFYNV 249

>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Complex With Aee788 Length = 328

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           +++L+W  C+ I +G+     YL++     ++H+DL A N+L+      KI+DFGLA++ 
Sbjct: 118 QYLLNW--CVQIAKGMN----YLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL 168
Query: 82  VKDDLEANTN 91
             ++ E +  
Sbjct: 169 GAEEKEYHAE 178

>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Compex With Hki-272 Length = 328

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           +++L+W  C+ I +G+     YL++     ++H+DL A N+L+      KI+DFGLA++ 
Sbjct: 118 QYLLNW--CVQIAKGMN----YLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL 168
Query: 82  VKDDLEANTN 91
             ++ E +  
Sbjct: 169 GAEEKEYHAE 178

>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation Length = 327

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           +++L+W  C+ I +G+     YL++     ++H+DL A N+L+      KI+DFGLA++ 
Sbjct: 117 QYLLNW--CVQIAKGMN----YLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL 167
Query: 82  VKDDLEANTN 91
             ++ E +  
Sbjct: 168 GAEEKEYHAE 177

>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 13-Jab Length = 327

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           +++L+W  C+ I +G+     YL++     ++H+DL A N+L+      KI+DFGLA++ 
Sbjct: 117 QYLLNW--CVQIAKGMN----YLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL 167
Query: 82  VKDDLEANTN 91
             ++ E +  
Sbjct: 168 GAEEKEYHAE 177

>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In Complex With Dacomitinib (soaked) Length = 329

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 9/66 (13%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           +++L+W  C+ I +G+     YL++     ++H+DL A N+L+      KI+DFGLA++ 
Sbjct: 119 QYLLNW--CVQIAKGMN----YLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL 169
Query: 82  VKDDLE 87
             ++ E
Sbjct: 170 GAEEKE 175

>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In Complex With Amp-Pnp Length = 327

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           +++L+W  C+ I +G+     YL++     ++H+DL A N+L+      KI+DFGLA++ 
Sbjct: 117 QYLLNW--CVQIAKGMN----YLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL 167
Query: 82  VKDDLEANTN 91
             ++ E +  
Sbjct: 168 GAEEKEYHAE 177

>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex With N-(4- (5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h- Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide Length = 446

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I   L YL  +S+  V+++DLK  N++LD+D   KI+DFGL +  +KD   A      GT
Sbjct: 257 IVSALDYL--HSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDG--ATMKTFCGT 312
Query: 97  QE 98
            E
Sbjct: 313 PE 314

>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric Inhibitor Length = 446

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I   L YL  +S+  V+++DLK  N++LD+D   KI+DFGL +  +KD   A      GT
Sbjct: 260 IVSALDYL--HSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDG--ATMKTFCGT 315
Query: 97  QE 98
            E
Sbjct: 316 PE 317

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIFV 82
           ++H+DLKA N+LLD D+  KI+DFG +  F 
Sbjct: 132 IVHRDLKAENLLLDADMNIKIADFGFSNEFT 162

>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase Domain Length = 317

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           L+ +  +H    + QG+ +L   +    IH+D+ A N+LL     +KI DFGLAR  + D
Sbjct: 149 LELRDLLHFSSQVAQGMAFLASKN---CIHRDVAARNVLLTNGHVAKIGDFGLARDIMND 205
Query: 85  D 85
Sbjct: 206 S 206

>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain Of Csf-1r Length = 329

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           L+ +  +H    + QG+ +L   +    IH+D+ A N+LL     +KI DFGLAR  + D
Sbjct: 157 LELRDLLHFSSQVAQGMAFLASKN---CIHRDVAARNVLLTNGHVAKIGDFGLARDIMND 213

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIFV 82
           ++H+DLKA N+LLD D+  KI+DFG +  F 
Sbjct: 135 IVHRDLKAENLLLDADMNIKIADFGFSNEFT 165

>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor Length = 315

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           +++L+W  C+ I +G+     YL++     ++H+DL A N+L+      KI+DFGLA++ 
Sbjct: 111 QYLLNW--CVQIAKGMN----YLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL 161
Query: 82  VKDDLEANTN 91
             ++ E +  
Sbjct: 162 GAEEKEYHAE 171

>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662 Length = 279

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           V+H+DLK +N+ LD     K+ DFGLARI   D  E      VGT
Sbjct: 137 VLHRDLKPANVFLDGKQNVKLGDFGLARILNHD--EDFAKEFVGT 179

>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1 Length = 328

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIFV 82
           ++H+DLKA N+LLD D+  KI+DFG +  F 
Sbjct: 135 IVHRDLKAENLLLDGDMNIKIADFGFSNEFT 165

>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide Substrate Complex: Kinase Substrate Recognition Length = 277

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 24/30 (80%)
Query: 49  KLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           KL ++H+DLK  NILLD+D+  K++DFG +
Sbjct: 129 KLNIVHRDLKPENILLDDDMNIKLTDFGFS 158

>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By Mutational Studies Length = 298

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 24/30 (80%)
Query: 49  KLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           KL ++H+DLK  NILLD+D+  K++DFG +
Sbjct: 142 KLNIVHRDLKPENILLDDDMNIKLTDFGFS 171

>pdb|3SA0|A Chain A, Complex Of Erk2 With Norathyriol Length = 360

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           C  + Q I +GL Y+   +   V+H+DLK SN+LL+     KI DFGLAR+   D
Sbjct: 127 CYFLYQ-ILRGLKYIHSAN---VLHRDLKPSNLLLNTTXDLKIXDFGLARVADPD 177

>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase, Kinase: An Active Protein Kinase Complexed With Nucleotide, Substrate-Analogue And Product Length = 298

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 24/30 (80%)
Query: 49  KLIVIHQDLKASNILLDEDLKSKISDFGLA 78
           KL ++H+DLK  NILLD+D+  K++DFG +
Sbjct: 142 KLNIVHRDLKPENILLDDDMNIKLTDFGFS 171

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + +G+ YL        +H+DL A N +LDE    K++DFGLAR
Sbjct: 141 VAKGMKYLASKK---FVHRDLAARNCMLDEKFTVKVADFGLAR 180

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + +G+ YL        +H+DL A N +LDE    K++DFGLAR
Sbjct: 139 VAKGMKYLASKK---FVHRDLAARNCMLDEKFTVKVADFGLAR 178

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 4   LQTVQLYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYL--QEYSKLIVIHQDLKASN 61
           LQ V  Y+ L    D + R  +     +   Q I +G+ YL  Q Y     IH++L A N
Sbjct: 93  LQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHSQHY-----IHRNLAARN 147
Query: 62  ILLDEDLKSKISDFGLAR 79
           +LLD D   KI DFGLA+
Sbjct: 148 VLLDNDRLVKIGDFGLAK 165

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + +G+ YL        +H+DL A N +LDE    K++DFGLAR
Sbjct: 134 VAKGMKYLASKK---FVHRDLAARNCMLDEKFTVKVADFGLAR 173

>pdb|1PME|A Chain A, Structure Of Penta Mutant Human Erk2 Map Kinase Complexed With A Specific Inhibitor Of Human P38 Map Kinase Length = 380

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           C  + Q I +GL Y+   +   V+H+DLK SN+LL+     KI DFGLAR+   D
Sbjct: 147 CYFLYQ-ILRGLKYIHSAN---VLHRDLKPSNLLLNTTXDLKICDFGLARVADPD 197

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 4   LQTVQLYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYL--QEYSKLIVIHQDLKASN 61
           LQ V  Y+ L    D + R  +     +   Q I +G+ YL  Q Y     IH++L A N
Sbjct: 93  LQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQHY-----IHRNLAARN 147
Query: 62  ILLDEDLKSKISDFGLAR 79
           +LLD D   KI DFGLA+
Sbjct: 148 VLLDNDRLVKIGDFGLAK 165

>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K659n Mutation Responsible For An Unclassified Craniosynostosis Syndrome. Length = 324

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 15  FDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISD 74
           +D++ +    + +K  +     + +G+ YL        IH+DL A N+L+ E+   KI+D
Sbjct: 144 YDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNVLVTENNVMKIAD 200
Query: 75  FGLARIFVKDDLEANT 90
           FGLAR     D   NT
Sbjct: 201 FGLARDINNIDYYKNT 216

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           L   T I+    I  G+ +  +   + ++H+D+K  NIL+D +   KI DFG+A+   + 
Sbjct: 108 LSVDTAINFTNQILDGIKHAHD---MRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSET 164
Query: 85  DLEANTNRIVGT 96
            L   TN ++GT
Sbjct: 165 SL-TQTNHVLGT 175

>pdb|3TEI|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           C  + Q I +GL Y+   +   V+H+DLK SN+LL+     KI DFGLAR+   D
Sbjct: 129 CYFLYQ-ILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADPD 179

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + +G+ YL        +H+DL A N +LDE    K++DFGLAR
Sbjct: 142 VAKGMKYLASKK---FVHRDLAARNCMLDEKFTVKVADFGLAR 181

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + +G+ YL        +H+DL A N +LDE    K++DFGLAR
Sbjct: 140 VAKGMKYLASKK---FVHRDLAARNCMLDEKFTVKVADFGLAR 179

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + +G+ YL        +H+DL A N +LDE    K++DFGLAR
Sbjct: 142 VAKGMKYLASKK---FVHRDLAARNCMLDEKFTVKVADFGLAR 181

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + +G+ YL        +H+DL A N +LDE    K++DFGLAR
Sbjct: 161 VAKGMKYLASKK---FVHRDLAARNCMLDEKFTVKVADFGLAR 200

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + +G+ YL        +H+DL A N +LDE    K++DFGLAR
Sbjct: 137 VAKGMKYLASKK---FVHRDLAARNCMLDEKFTVKVADFGLAR 176

>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +I  I +GL Y+       +IH+DLK SN+ ++ED + KI D+GLAR
Sbjct: 130 LIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDYGLAR 173

>pdb|4FV7|A Chain A, Crystal Structure Of The Erk2 Complexed With E94 Length = 360

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           C  + Q I +GL Y+   +   V+H+DLK SN+LL+     KI DFGLAR+   D
Sbjct: 127 CYFLYQ-ILRGLKYIHSAN---VLHRDLKPSNLLLNTTXDLKICDFGLARVADPD 177

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + +G+ YL        +H+DL A N +LDE    K++DFGLAR
Sbjct: 141 VAKGMKYLASKK---FVHRDLAARNCMLDEKFTVKVADFGLAR 180

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + +G+ YL        +H+DL A N +LDE    K++DFGLAR
Sbjct: 160 VAKGMKYLASKK---FVHRDLAARNCMLDEKFTVKVADFGLAR 199

>pdb|4FUX|A Chain A, Crystal Structure Of The Erk2 Complexed With E75 Length = 360

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           C  + Q I +GL Y+   +   V+H+DLK SN+LL+     KI DFGLAR+   D
Sbjct: 127 CYFLYQ-ILRGLKYIHSAN---VLHRDLKPSNLLLNTTXDLKICDFGLARVADPD 177

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 24/29 (82%)
Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARI 80
           ++H+DLK  N+LLD++L  KI+DFGL+ I
Sbjct: 129 IVHRDLKPENLLLDDNLNVKIADFGLSNI 157

>pdb|3QYW|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor Length = 364

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           C  + Q I +GL Y+   +   V+H+DLK SN+LL+     KI DFGLAR+   D
Sbjct: 131 CYFLYQ-ILRGLKYIHSAN---VLHRDLKPSNLLLNTTXDLKICDFGLARVADPD 181

>pdb|2Y9Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           C  + Q I +GL Y+   +   V+H+DLK SN+LL+     KI DFGLAR+   D
Sbjct: 129 CYFLYQ-ILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADPD 179

>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An Arylamide Inhibitor Length = 333

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           +H    + QG+ +L   +    IH+D+ A N+LL     +KI DFGLAR  + D 
Sbjct: 167 LHFSSQVAQGMAFLASKN---CIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDS 218

>pdb|2GPH|A Chain A, Docking Motif Interactions In The Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           C  + Q I +GL Y+   +   V+H+DLK SN+LL+     KI DFGLAR+   D
Sbjct: 131 CYFLYQ-ILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADPD 181

>pdb|2OJG|A Chain A, Crystal Structure Of Erk2 In Complex With N,n-dimethyl-4-(4- Phenyl-1h-pyrazol-3-yl)-1h-pyrrole-2-carboxamide Length = 380

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           C  + Q I +GL Y+   +   V+H+DLK SN+LL+     KI DFGLAR+   D
Sbjct: 147 CYFLYQ-ILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADPD 197

>pdb|1GOL|A Chain A, Coordinates Of Rat Map Kinase Erk2 With An Arginine Mutation At Position 52 Length = 364

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           C  + Q I +GL Y+   +   V+H+DLK SN+LL+     KI DFGLAR+   D
Sbjct: 131 CYFLYQ-ILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADPD 181

>pdb|4GSB|A Chain A, Monoclinic Crystal Form Of The Apo-Erk2 Length = 364

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           C  + Q I +GL Y+   +   V+H+DLK SN+LL+     KI DFGLAR+   D
Sbjct: 131 CYFLYQ-ILRGLKYIHSAN---VLHRDLKPSNLLLNTTXDLKICDFGLARVADPD 181

>pdb|3R63|A Chain A, Structure Of Erk2 (Spe) Mutant (S246e) Length = 358

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           C  + Q I +GL Y+   +   V+H+DLK SN+LL+     KI DFGLAR+   D
Sbjct: 125 CYFLYQ-ILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADPD 175

>pdb|3ZUV|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           C  + Q I +GL Y+   +   V+H+DLK SN+LL+     KI DFGLAR+   D
Sbjct: 131 CYFLYQ-ILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADPD 181

>pdb|3ZU7|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           C  + Q I +GL Y+   +   V+H+DLK SN+LL+     KI DFGLAR+   D
Sbjct: 132 CYFLYQ-ILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADPD 182

>pdb|2Z7L|A Chain A, Unphosphorylated Mitogen Activated Protein Kinase Erk2 In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin 2-Yl]amino}phenyl)acetic Acid Length = 366

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           C  + Q I +GL Y+   +   V+H+DLK SN+LL+     KI DFGLAR+   D
Sbjct: 133 CYFLYQ-ILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADPD 183

>pdb|3C9W|A Chain A, Crystal Structure Of Erk-2 With Hypothemycin Covalently Bound Length = 357

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           C  + Q I +GL Y+   +   V+H+DLK SN+LL+     KI DFGLAR+   D
Sbjct: 124 CYFLYQ-ILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADPD 174

>pdb|2FYS|B Chain B, Crystal Structure Of Erk2 Complex With Kim Peptide Derived From Mkp3 Length = 364

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           C  + Q I +GL Y+   +   V+H+DLK SN+LL+     KI DFGLAR+   D
Sbjct: 131 CYFLYQ-ILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADPD 181

>pdb|2ERK|A Chain A, Phosphorylated Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           C  + Q I +GL Y+   +   V+H+DLK SN+LL+     KI DFGLAR+   D
Sbjct: 132 CYFLYQ-ILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADPD 182

>pdb|3O71|A Chain A, Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length = 358

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           C  + Q I +GL Y+   +   V+H+DLK SN+LL+     KI DFGLAR+   D
Sbjct: 125 CYFLYQ-ILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADPD 175

>pdb|4FV6|A Chain A, Crystal Structure Of The Erk2 Complexed With E57 Length = 360

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           C  + Q I +GL Y+   +   V+H+DLK SN+LL+     KI DFGLAR+   D
Sbjct: 127 CYFLYQ-ILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADPD 177

>pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Pyrazolopyridazine Derivative Length = 368

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           C  + Q I +GL Y+   +   V+H+DLK SN+LL+     KI DFGLAR+   D
Sbjct: 135 CYFLYQ-ILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADPD 185

>pdb|1TVO|A Chain A, The Structure Of Erk2 In Complex With A Small Molecule Inhibitor Length = 368

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           C  + Q I +GL Y+   +   V+H+DLK SN+LL+     KI DFGLAR+   D
Sbjct: 127 CYFLYQ-ILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADPD 177

>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone Inhibitor Length = 335

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           +H    + QG+ +L   +    IH+D+ A N+LL     +KI DFGLAR  + D 
Sbjct: 169 LHFSSQVAQGMAFLASKN---CIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDS 220

>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 11 (p38 Beta) In Complex With Nilotinib Length = 348

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 39  QGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +GL Y+       +IH+DLK SN+ ++ED + +I DFGLAR
Sbjct: 134 RGLKYIHSAG---IIHRDLKPSNVAVNEDCELRILDFGLAR 171

>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70 Length = 613

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 9/73 (12%)
Query: 19  PIRRFILDWKTCI------HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKI 72
           P+ +F++  +  I       ++  ++ G+ YL+E +    +H++L A N+LL     +KI
Sbjct: 421 PLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKN---FVHRNLAARNVLLVNRHYAKI 477
Query: 73  SDFGLARIFVKDD 85
           SDFGL++    DD
Sbjct: 478 SDFGLSKALGADD 490

>pdb|3NIE|A Chain A, Crystal Structure Of Pf11_0147 Length = 429

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           +IH+DLK +N LL++D   KI DFGLAR    D
Sbjct: 152 IIHRDLKPANCLLNQDCSVKICDFGLARTINSD 184

>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin E804 Length = 313

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 14/78 (17%)
Query: 12  YLIFDV--------DPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNIL 63
           YLIFD+        D + R         H IQ I + +L+  +   + V+H+DLK  N+L
Sbjct: 97  YLIFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQ---MGVVHRDLKPENLL 153
Query: 64  LDEDLKS---KISDFGLA 78
           L   LK    K++DFGLA
Sbjct: 154 LASKLKGAAVKLADFGLA 171

>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand Length = 279

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           V+H+DLK +N+ LD     K+ DFGLARI   D   A     VGT
Sbjct: 137 VLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKA--FVGT 179

>pdb|3MDY|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Bone Morp Protein Receptor Type-1b (Bmpr1b) In Complex With Fkbp12 An 193189 Length = 337

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 11  LYLIFDV-------DPIRRFILDWKTCIHIIQGITQGLLYLQE-----YSKLIVIHQDLK 58
           LYLI D        D ++   LD K+ + +      GL +L         K  + H+DLK
Sbjct: 110 LYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLK 169
Query: 59  ASNILLDEDLKSKISDFGLARIFVKDDLEAN--TNRIVGTQ 97
           + NIL+ ++    I+D GLA  F+ D  E +   N  VGT+
Sbjct: 170 SKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTK 210

>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild Type Fgf Receptor 2 (Fgfr2) Kinase Domain Length = 370

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 15  FDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISD 74
           +D++ +    + +K  +     + +G+ YL        IH+DL A N+L+ E+   KI+D
Sbjct: 190 YDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNVLVTENNVMKIAD 246
Query: 75  FGLAR 79
           FGLAR
Sbjct: 247 FGLAR 251

>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain Length = 316

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 15  FDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISD 74
           +D++ +    + +K  +     + +G+ YL        IH+DL A N+L+ E+   KI+D
Sbjct: 136 YDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNVLVTENNVMKIAD 192
Query: 75  FGLAR 79
           FGLAR
Sbjct: 193 FGLAR 197

>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase In Complex With Arq 069 Length = 313

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 15  FDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISD 74
           +D++ +    + +K  +     + +G+ YL        IH+DL A N+L+ E+   KI+D
Sbjct: 133 YDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNVLVTENNVMKIAD 189
Query: 75  FGLAR 79
           FGLAR
Sbjct: 190 FGLAR 194

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 51  IVIHQDLKASNILLDEDLKSKISDFGLARI 80
           +V+H+DLK  N+LLD  + +KI+DFGL+ +
Sbjct: 131 MVVHRDLKPENVLLDAHMNAKIADFGLSNM 160

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 51  IVIHQDLKASNILLDEDLKSKISDFGLARI 80
           +V+H+DLK  N+LLD  + +KI+DFGL+ +
Sbjct: 131 MVVHRDLKPENVLLDAHMNAKIADFGLSNM 160

>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565a Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 15  FDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISD 74
           +D++ +    + +K  +     + +G+ YL        IH+DL A N+L+ E+   KI+D
Sbjct: 144 YDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNVLVTENNVMKIAD 200
Query: 75  FGLAR 79
           FGLAR
Sbjct: 201 FGLAR 205

>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565g Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 15  FDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISD 74
           +D++ +    + +K  +     + +G+ YL        IH+DL A N+L+ E+   KI+D
Sbjct: 144 YDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNVLVTENNVMKIAD 200
Query: 75  FGLAR 79
           FGLAR
Sbjct: 201 FGLAR 205

>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K526e Mutation Responsible For Crouzon Syndrome Length = 324

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 15  FDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISD 74
           +D++ +    + +K  +     + +G+ YL        IH+DL A N+L+ E+   KI+D
Sbjct: 144 YDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNVLVTENNVMKIAD 200
Query: 75  FGLAR 79
           FGLAR
Sbjct: 201 FGLAR 205

>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains Trapped In Trans-Phosphorylation Reaction Length = 334

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 15  FDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISD 74
           +D++ +    + +K  +     + +G+ YL        IH+DL A N+L+ E+   KI+D
Sbjct: 144 YDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNVLVTENNVMKIAD 200
Query: 75  FGLAR 79
           FGLAR
Sbjct: 201 FGLAR 205

>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549t Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 15  FDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISD 74
           +D++ +    + +K  +     + +G+ YL        IH+DL A N+L+ E+   KI+D
Sbjct: 144 YDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNVLVTENNVMKIAD 200
Query: 75  FGLAR 79
           FGLAR
Sbjct: 201 FGLAR 205

>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp Analog And Substrate Peptide Length = 334

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 15  FDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISD 74
           +D++ +    + +K  +     + +G+ YL        IH+DL A N+L+ E+   KI+D
Sbjct: 144 YDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNVLVTENNVMKIAD 200
Query: 75  FGLAR 79
           FGLAR
Sbjct: 201 FGLAR 205

>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549h Mutation Responsible For Crouzon Syndrome. Length = 324

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 15  FDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISD 74
           +D++ +    + +K  +     + +G+ YL        IH+DL A N+L+ E+   KI+D
Sbjct: 144 YDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNVLVTENNVMKIAD 200
Query: 75  FGLAR 79
           FGLAR
Sbjct: 201 FGLAR 205

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNR 92
           + +G+ +L        +H+DL A N +LDE    K++DFGLAR  +  + ++  N+
Sbjct: 143 VAKGMKFLASKK---FVHRDLAARNCMLDEKFTVKVADFGLARDMLDKEFDSVHNK 195

>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The Murine Receptor Tyrosine Kinase Tyro3 (Sky) Length = 323

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 23  FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV 82
           F L  +T +  +  I  G+ YL   S    IH+DL A N +L ED+   ++DFGL+R   
Sbjct: 132 FNLPLQTLVRFMVDIACGMEYL---SSRNFIHRDLAARNCMLAEDMTVCVADFGLSRKIY 188
Query: 83  KDD 85
             D
Sbjct: 189 SGD 191

>pdb|3N9X|A Chain A, Crystal Structure Of Map Kinase From Plasmodium Berghei, Pb000659.00.0 Length = 432

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 7/45 (15%)
Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIF-------VKDDLEAN 89
           +IH+DLK +N LL++D   K+ DFGLAR         + +DLE N
Sbjct: 150 IIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEEN 194

>pdb|4H3Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           C  + Q I +GL Y+   +   V+H+DLK SN+LL+     KI DFGLAR+   D
Sbjct: 129 CYFLYQ-ILRGLKYIHSAN---VLHRDLKPSNLLLNTTSDLKICDFGLARVADPD 179

>pdb|3B2T|A Chain A, Structure Of Phosphotransferase Length = 311

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 15  FDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISD 74
           +D++ +    + +K  +     + +G+ YL        IH+DL A N+L+ E+   KI+D
Sbjct: 131 YDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLTARNVLVTENNVMKIAD 187
Query: 75  FGLAR 79
           FGLAR
Sbjct: 188 FGLAR 192

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + +G+ YL        IH+DL A N+L+ ED   KI+DFGLAR
Sbjct: 144 VARGMEYLASKK---CIHRDLAARNVLVTEDNVMKIADFGLAR 183

>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 39.3 bits (90), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + +G+ YL        IH+DL A N+L+ ED   KI+DFGLAR
Sbjct: 159 VARGMEYLASKK---CIHRDLAARNVLVTEDNVMKIADFGLAR 198

>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A Dihydroquinazolinone Length = 370

Iteration: 1
 Score = 39.3 bits (90), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 39  QGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +GL Y+       +IH+DLK SN+ ++ED + +I DFGLAR
Sbjct: 142 RGLKYIHSAG---IIHRDLKPSNVAVNEDSELRILDFGLAR 179

>pdb|2ZOQ|A Chain A, Structural Dissection Of Human Mitogen-Activated Kinase Erk1 Length = 382

Iteration: 1
 Score = 39.3 bits (90), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 30  CIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           C  + Q I +GL Y+   +   V+H+DLK SN+L++     KI DFGLARI
Sbjct: 147 CYFLYQ-ILRGLKYIHSAN---VLHRDLKPSNLLINTTCDLKICDFGLARI 193

>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor Length = 341

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I   L YL  +S+  V+++DLK  N++LD+D   KI+DFGL +  +KD   A      GT
Sbjct: 118 IVSALDYL--HSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDG--ATMKXFCGT 173
Query: 97  QE 98
            E
Sbjct: 174 PE 175

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           +++   I+  + YL+   K   IH+DL A N L+ E+   K++DFGL+R+   D   A+ 
Sbjct: 112 LYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTFTAHA 168
Query: 91  N 91
Sbjct: 169 G 169

>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate Peptide And Inhibitor Length = 342

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I   L YL  +S+  V+++DLK  N++LD+D   KI+DFGL +  +KD   A      GT
Sbjct: 119 IVSALDYL--HSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDG--ATMKXFCGT 174
Query: 97  QE 98
            E
Sbjct: 175 PE 176

>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain Length = 308

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR-IFVKD 84
           +H++  I  G+ YL  +    V+H+DL   N+L+ + L  KISD GL R ++  D
Sbjct: 148 VHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKLNVKISDLGLFREVYAAD 199

>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363 Length = 340

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I   L YL  +S+  V+++DLK  N++LD+D   KI+DFGL +  +KD   A      GT
Sbjct: 117 IVSALDYL--HSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDG--ATMKXFCGT 172
Query: 97  QE 98
            E
Sbjct: 173 PE 174

>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A Dihydroquinazolinone Inhibitor Length = 370

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 39  QGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +GL Y+       +IH+DLK SN+ ++ED + +I DFGLAR
Sbjct: 142 RGLKYIHSAG---IIHRDLKPSNVAVNEDSELRILDFGLAR 179

>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 19  PIRRFILDWKTCIHIIQ---GITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDF 75
           P +    D+ T  H+I     + +G+ +L        IH+DL A NILL E    KI DF
Sbjct: 132 PYKDLYKDFLTLEHLIXYSFQVAKGMEFLASRK---XIHRDLAARNILLSEKNVVKIXDF 188
Query: 76  GLARIFVKD 84
           GLAR   KD
Sbjct: 189 GLARDIYKD 197

>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + +G+ YL        IH+DL A N+L+ ED   KI+DFGLAR
Sbjct: 152 VARGMEYLASKK---CIHRDLAARNVLVTEDNVMKIADFGLAR 191

>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + +G+ YL        IH+DL A N+L+ ED   KI+DFGLAR
Sbjct: 200 VARGMEYLASKK---CIHRDLAARNVLVTEDNVMKIADFGLAR 239

>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + +G+ YL        IH+DL A N+L+ ED   KI+DFGLAR
Sbjct: 159 VARGMEYLASKK---CIHRDLAARNVLVTEDNVMKIADFGLAR 198

>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Inactive Double Mutant With Selenomethionine Length = 327

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 51  IVIHQDLKASNILLDEDLKSKISDFGLARIFV 82
            ++H+DLKA N+LLD D   KI+DFG +  F 
Sbjct: 133 FIVHRDLKAENLLLDADXNIKIADFGFSNEFT 164

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	142
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	7e-33
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	6e-27
3soc_A	322	Activin receptor type-2A; structural genomics cons	6e-24
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	3e-23
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	2e-18
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	8e-17
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	1e-16
3q4u_A	301	Activin receptor type-1; structural genomics conso	1e-16
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	2e-16
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	2e-15
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	3e-15
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	3e-15
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	5e-15
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	6e-14
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	2e-13
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	2e-13
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	4e-13
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	5e-13
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	8e-12
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	9e-12
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	1e-11
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	2e-11
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	3e-11
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	3e-11
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	4e-11
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	4e-11
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	5e-11
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	5e-11
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	6e-11
3fme_A	290	Dual specificity mitogen-activated protein kinase;	6e-11
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	6e-11
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	7e-11
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	7e-11
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	8e-11
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	8e-11
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	1e-10
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	1e-10
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	1e-10
3an0_A	340	Dual specificity mitogen-activated protein kinase;	1e-10
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	1e-10
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	1e-10
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	1e-10
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	1e-10
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	1e-10
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	1e-10
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	2e-10
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	2e-10
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	2e-10
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	2e-10
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	2e-10
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	2e-10
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	2e-10
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	3e-10
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	3e-10
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	4e-10
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	4e-10
2a19_B	284	Interferon-induced, double-stranded RNA-activated	5e-10
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	5e-10
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	5e-10
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	5e-10
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	5e-10
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	5e-10
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	6e-10
2dyl_A	318	Dual specificity mitogen-activated protein kinase	6e-10
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	6e-10
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	7e-10
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	7e-10
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	7e-10
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	8e-10
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	9e-10
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	9e-10
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	1e-09
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	1e-09
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	1e-09
3rp9_A	458	Mitogen-activated protein kinase; structural genom	1e-09
3aln_A	327	Dual specificity mitogen-activated protein kinase;	2e-09
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	2e-09
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	2e-09
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	2e-09
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	2e-09
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	2e-09
3pls_A	298	Macrophage-stimulating protein receptor; protein k	2e-09
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	2e-09
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	2e-09
3ork_A	311	Serine/threonine protein kinase; structural genomi	2e-09
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	2e-09
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	2e-09
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	3e-09
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	3e-09
4aoj_A	329	High affinity nerve growth factor receptor; transf	3e-09
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	3e-09
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	3e-09
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	3e-09
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	3e-09
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	3e-09
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	3e-09
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	3e-09
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	4e-09
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	4e-09
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	4e-09
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	4e-09
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	4e-09
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	4e-09
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	5e-09
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	5e-09
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	5e-09
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	6e-09
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	6e-09
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	6e-09
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	6e-09
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	7e-09
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	7e-09
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	7e-09
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	7e-09
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	7e-09
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	8e-09
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	8e-09
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	8e-09
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	9e-09
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	9e-09
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	1e-08
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	1e-08
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	1e-08
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	1e-08
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	1e-08
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	1e-08
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	1e-08
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	1e-08
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	1e-08
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	1e-08
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	1e-08
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	1e-08
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	1e-08
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	1e-08
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	2e-08
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	2e-08
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	2e-08
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	2e-08
3niz_A	311	Rhodanese family protein; structural genomics, str	2e-08
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	2e-08
3o0g_A	292	Cell division protein kinase 5; kinase activator c	2e-08
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	2e-08
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	2e-08
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	2e-08
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	2e-08
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	2e-08
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	2e-08
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	2e-08
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	3e-08
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	3e-08
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	3e-08
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	3e-08
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	3e-08
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	3e-08
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	4e-08
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	4e-08
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	4e-08
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	4e-08
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	5e-08
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	6e-08
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	7e-08
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	7e-08
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	8e-08
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	8e-08
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	9e-08
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	9e-08
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	1e-07
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	1e-07
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	1e-07
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	2e-07
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	2e-07
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	2e-07
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	2e-07
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	3e-07
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	3e-07
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	3e-07
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	3e-07
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	3e-07
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	3e-07
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	3e-07
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	3e-07
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	3e-07
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	4e-07
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	4e-07
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	4e-07
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	4e-07
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	5e-07
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	6e-07
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	6e-07
3bhy_A	283	Death-associated protein kinase 3; death associate	8e-07
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	8e-07
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	8e-07
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	1e-06
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	1e-06
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	1e-06
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	1e-06
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	1e-06
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	1e-06
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	1e-06
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	2e-06
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	2e-06
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	2e-06
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	2e-06
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	2e-06
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	2e-06
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	3e-06
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	3e-06
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	3e-06
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	4e-06
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	5e-06
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	5e-06
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	5e-06
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	6e-06
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	7e-06
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	8e-06
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	1e-05
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	1e-05
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	2e-05
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	8e-05
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	5e-04
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	6e-04

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  116 bits (293), Expect = 7e-33
 Identities = 44/172 (25%), Positives = 61/172 (35%), Gaps = 51/172 (29%)

Query: 18  DPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL 77
                  L W     I QG   G+ +L E      IH+D+K++NILLDE   +KISDFGL
Sbjct: 123 CLDGTPPLSWHMRCKIAQGAANGINFLHENH---HIHRDIKSANILLDEAFTAKISDFGL 179

Query: 78  ARIFVKDDLEANTNRIVGT---------------------------------------QE 98
           AR   K      T+RIVGT                                       +E
Sbjct: 180 ARASEKFAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHRE 239

Query: 99  SYNL-------WKDGKG-RKLMDPSLDDTHSSWKLLTCLQIALLCVQENSND 142
              L         + K     +D  ++D  S+  +     +A  C+ E  N 
Sbjct: 240 PQLLLDIKEEIEDEEKTIEDYIDKKMNDADST-SVEAMYSVASQCLHEKKNK 290

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  101 bits (253), Expect = 6e-27
 Identities = 42/168 (25%), Positives = 65/168 (38%), Gaps = 52/168 (30%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           LDW     I  G  +GL YL ++    +IH+D+KA+NILLDE+ ++ + DFGLA++    
Sbjct: 128 LDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYK 187

Query: 85  DLEANTNRIVGT--------------------------------------------QESY 100
           D    T  + GT                                             +  
Sbjct: 188 DTHVTT-AVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDV 246

Query: 101 NL--W-----KDGKGRKLMDPSLDDTHSSWKLLTCLQIALLCVQENSN 141
            L  W     K+ K   L+D  L   +   ++   +Q+ALLC Q +  
Sbjct: 247 MLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPM 294

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 93.2 bits (232), Expect = 6e-24
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 14/95 (14%)

Query: 9   LYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYL-------QEYSKLIVIHQDLKASN 61
           L  +L       +  ++ W    HI + + +GL YL       ++  K  + H+D+K+ N
Sbjct: 109 LSDFL-------KANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKN 161

Query: 62  ILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           +LL  +L + I+DFGLA  F       +T+  VGT
Sbjct: 162 VLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGT 196

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 91.5 bits (228), Expect = 3e-23
 Identities = 39/167 (23%), Positives = 66/167 (39%), Gaps = 52/167 (31%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           + W+  + I  G  +GL YL   +   +IH+D+K+ NILLDE+   KI+DFG+++   + 
Sbjct: 136 MSWEQRLEICIGAARGLHYLHTRA---IIHRDVKSINILLDENFVPKITDFGISKKGTEL 192

Query: 85  DLEANTNRIVGT------------------------------------------QESYNL 102
           D    +  + GT                                          +E  NL
Sbjct: 193 DQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNL 252

Query: 103 --W-----KDGKGRKLMDPSLDDTHSSWKLLTCLQIALLCVQENSND 142
             W      +G+  +++DP+L D      L      A+ C+  +S D
Sbjct: 253 AEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSED 299

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 78.7 bits (194), Expect = 2e-18
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 12/91 (13%)

Query: 18  DPIRRFILDWKTCIHIIQGITQGLLYL------QEYSKLIVIHQDLKASNILLDEDLKSK 71
             +     DW +   +   +T+GL YL       ++ K  + H+DL + N+L+  D    
Sbjct: 101 KYLSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCV 160

Query: 72  ISDFGLARIF------VKDDLEANTNRIVGT 96
           ISDFGL+            + +      VGT
Sbjct: 161 ISDFGLSMRLTGNRLVRPGEEDNAAISEVGT 191

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 74.0 bits (182), Expect = 8e-17
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 14/95 (14%)

Query: 9   LYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYL-----QEYSKLIVIHQDLKASNIL 63
           LY YL       +   LD K+ + +      GL +L         K  + H+DLK+ NIL
Sbjct: 122 LYDYL-------KSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNIL 174

Query: 64  LDEDLKSKISDFGLARIFV--KDDLEANTNRIVGT 96
           + ++    I+D GLA  F+   ++++   N  VGT
Sbjct: 175 VKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGT 209

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 73.5 bits (181), Expect = 1e-16
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 9   LYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL 68
           LY  L        R  LD +  + +   + +G+ YL       ++H++LK+ N+L+D+  
Sbjct: 121 LYRLLH---KSGAREQLDERRRLSMAYDVAKGMNYLHN-RNPPIVHRNLKSPNLLVDKKY 176

Query: 69  KSKISDFGLARIFVKDDLEANTNRIVGT 96
             K+ DFGL+R  +K     ++    GT
Sbjct: 177 TVKVCDFGLSR--LKASTFLSSKSAAGT 202

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 73.2 bits (180), Expect = 1e-16
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 14/95 (14%)

Query: 9   LYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYL-----QEYSKLIVIHQDLKASNIL 63
           LY YL       +   LD  +C+ I+  I  GL +L         K  + H+DLK+ NIL
Sbjct: 93  LYDYL-------QLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNIL 145

Query: 64  LDEDLKSKISDFGLARIFV--KDDLEANTNRIVGT 96
           + ++ +  I+D GLA +     + L+   N  VGT
Sbjct: 146 VKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGT 180

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 70.2 bits (172), Expect = 2e-15
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 14/95 (14%)

Query: 9   LYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYL-----QEYSKLIVIHQDLKASNIL 63
           L+ YL        R+ +  +  I +      GL +L         K  + H+DLK+ NIL
Sbjct: 127 LFDYL-------NRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNIL 179

Query: 64  LDEDLKSKISDFGLARIF--VKDDLEANTNRIVGT 96
           + ++    I+D GLA       D ++   N  VGT
Sbjct: 180 VKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGT 214

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 69.6 bits (171), Expect = 3e-15
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
            + K  I I +   +G+ YL  ++K I IH+DLK++NI L ED   KI DFGLA    + 
Sbjct: 117 FEMKKLIDIARQTARGMDYL--HAKSI-IHRDLKSNNIFLHEDNTVKIGDFGLATEKSRW 173

Query: 85  DLEANTNRIVGT 96
                  ++ G+
Sbjct: 174 SGSHQFEQLSGS 185

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 69.7 bits (171), Expect = 3e-15
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
             W   +   + I  G+ YL   +   +IH+DL + N L+ E+    ++DFGLAR+ V +
Sbjct: 105 YPWSQRVSFAKDIASGMAYLHSMN---IIHRDLNSHNCLVRENKNVVVADFGLARLMVDE 161

Query: 85  DLEANTNR 92
             +    R
Sbjct: 162 KTQPEGLR 169

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 65.7 bits (161), Expect = 6e-14
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
             F++D    +     + +G+ +L     LI     L + ++++DED+ ++IS   +   
Sbjct: 104 TNFVVDQSQAVKFALDMARGMAFLHTLEPLI-PRHALNSRSVMIDEDMTARISMADVKFS 162

Query: 81  FVK 83
           F  
Sbjct: 163 FQS 165

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 6/77 (7%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKS-KISDFGLAR 79
                     +      +QG+ YL       +IH+DLK  N+LL       KI DFG A 
Sbjct: 95  PLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTAC 154

Query: 80  IFVKDDLEANTNRIVGT 96
                D++ +     G+
Sbjct: 155 -----DIQTHMTNNKGS 166

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
            + +LD      I Q I +G+ YL  ++K I +H+DLK+ N+  D   K  I+DFGL  I
Sbjct: 123 AKIVLDVNKTRQIAQEIVKGMGYL--HAKGI-LHKDLKSKNVFYDNG-KVVITDFGLFSI 178

Query: 81  FVKDDLEANTNR 92
                     ++
Sbjct: 179 SGVLQAGRREDK 190

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 63.4 bits (155), Expect = 4e-13
 Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 8/74 (10%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKS--------KISDFG 76
           +     ++    I +G+ YL + + + +IH+DLK+SNIL+ + +++        KI+DFG
Sbjct: 102 IPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFG 161

Query: 77  LARIFVKDDLEANT 90
           LAR + +    +  
Sbjct: 162 LAREWHRTTKMSAA 175

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 63.1 bits (154), Expect = 5e-13
 Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 11/81 (13%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKS-----KISDF 75
           +   + W   + ++  I  G+ Y+Q      ++H+DL++ NI L    ++     K++DF
Sbjct: 115 KAHPIKWSVKLRLMLDIALGIEYMQN-QNPPIVHRDLRSPNIFLQSLDENAPVCAKVADF 173

Query: 76  GLARIFVKDDLEANTNRIVGT 96
           GL++  V        + ++G 
Sbjct: 174 GLSQQSVHS-----VSGLLGN 189

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 60.3 bits (146), Expect = 8e-12
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
               L     + +   I  G+ Y++  +    +H+DL+A+NIL+ E+L  K++DFGLAR+
Sbjct: 356 TGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARL 412

Query: 81  FVKDDLEANTN 91
              ++  A   
Sbjct: 413 IEDNEYTARQG 423

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 60.2 bits (146), Expect = 9e-12
 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
            R  +     +++   I+  + YL++ +    IH++L A N L+ E+   K++DFGL+R+
Sbjct: 311 NRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRNLAARNCLVGENHLVKVADFGLSRL 367

Query: 81  FVKDD 85
            +  D
Sbjct: 368 -MTGD 371

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 59.7 bits (145), Expect = 1e-11
 Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 10  YLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLK 69
           +    F +D      +  +    II+ +     Y+  +++  + H+D+K SNIL+D++ +
Sbjct: 133 FDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYI--HNEKNICHRDVKPSNILMDKNGR 190

Query: 70  SKISDFGLARIFVKDDLE 87
            K+SDFG +   V   ++
Sbjct: 191 VKLSDFGESEYMVDKKIK 208

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           +       ++  ++ G+ YL+E +    +H+DL A N+LL     +KISDFGL++    D
Sbjct: 107 IPVSNVAELLHQVSMGMKYLEEKN---FVHRDLAARNVLLVNRHYAKISDFGLSKALGAD 163

Query: 85  D 85
           D
Sbjct: 164 D 164

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 59.0 bits (143), Expect = 3e-11
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
               L     + +   I  G+ Y++  +    +H+DL+A+NIL+ E+L  K++DFGLAR+
Sbjct: 273 TGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARL 329

Query: 81  FVKDDLEANTN 91
              ++  A   
Sbjct: 330 IEDNEYTARQG 340

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 58.8 bits (142), Expect = 3e-11
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           +       ++  ++ G+ YL+E +    +H++L A N+LL     +KISDFGL++    D
Sbjct: 433 IPVSNVAELLHQVSMGMKYLEEKN---FVHRNLAARNVLLVNRHYAKISDFGLSKALGAD 489

Query: 85  D 85
           D
Sbjct: 490 D 490

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 58.0 bits (141), Expect = 4e-11
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
            R  +     +++   I+  + YL++ +    IH+DL A N L+ E+   K++DFGL+R+
Sbjct: 104 NRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRL 160

Query: 81  FVKDDLEANTN 91
              D   A+  
Sbjct: 161 MTGDTYTAHAG 171

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 57.7 bits (140), Expect = 4e-11
 Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 10/77 (12%)

Query: 22  RFILDWKTCIHIIQGITQGLLYL--QEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
            F+L       + Q +T  L     +      V+H+DLK +N+ LD     K+ DFGLAR
Sbjct: 111 EFVLRV-----MTQ-LTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLAR 164

Query: 80  IFVKDDLEANTNRIVGT 96
           I   D   A T   VGT
Sbjct: 165 ILNHDTSFAKT--FVGT 179

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 58.1 bits (141), Expect = 5e-11
 Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 4/64 (6%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
                 + +++GI  G+ YL +      +H+DL A NIL++ +L  K+SDFGL R  ++D
Sbjct: 144 FTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLGR-VLED 199

Query: 85  DLEA 88
           D EA
Sbjct: 200 DPEA 203

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 58.2 bits (141), Expect = 5e-11
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
                     I     I +G+ ++++ +    IH+DL+A+NIL+   L  KI+DFGLAR+
Sbjct: 277 EGSKQPLPKLIDFSAQIAEGMAFIEQRN---YIHRDLRAANILVSASLVCKIADFGLARV 333

Query: 81  FVKDD 85
              ++
Sbjct: 334 IEDNE 338

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 57.8 bits (140), Expect = 6e-11
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 11/74 (14%)

Query: 23  FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV 82
            ILDW      +Q I   L ++ +     ++H+D+K+ NI L +D   ++ DFG+AR+  
Sbjct: 126 QILDW-----FVQ-ICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLN 176

Query: 83  KDDLEANTNRIVGT 96
                A     +GT
Sbjct: 177 STVELARA--CIGT 188

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 57.6 bits (140), Expect = 6e-11
 Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTN 91
            I   I + L +L  +SKL VIH+D+K SN+L++   + K+ DFG++   V DD+  + +
Sbjct: 113 KIAVSIVKALEHL--HSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLV-DDVAKDID 169

Query: 92  RIVGTQ 97
              G +
Sbjct: 170 --AGCK 173

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 57.7 bits (140), Expect = 6e-11
 Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           + ++ I  G  YL       VIH+DLK  N+ L+EDL+ KI DFGLA     D 
Sbjct: 145 YYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG 195

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 57.6 bits (140), Expect = 7e-11
 Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           +  +  ++    I +G+ YL++     ++H+DL A N+L+      KI+DFGLA++   +
Sbjct: 114 IGSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAE 170

Query: 85  DLEANTN 91
           + E +  
Sbjct: 171 EKEYHAE 177

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 57.3 bits (139), Expect = 7e-11
 Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 4/64 (6%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
                 + +++GI  G+ YL   +    +H+DL A NIL++ +L  K+SDFGL+R  ++D
Sbjct: 144 FSVLQLVGMLRGIAAGMKYLANMN---YVHRDLAARNILVNSNLVCKVSDFGLSR-VLED 199

Query: 85  DLEA 88
           D EA
Sbjct: 200 DPEA 203

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 56.8 bits (138), Expect = 8e-11
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           + + + + + + YL+       +H+DL A N L+++    K+SDFGL+R  + D+
Sbjct: 123 LEMCKDVCEAMEYLESKQ---FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE 174

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 57.4 bits (139), Expect = 8e-11
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 6/65 (9%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTN 91
            I++ + + + +L   +   ++H+DLK  NILLD++++ ++SDFG +      +      
Sbjct: 204 SIMRSLLEAVSFLHANN---IVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEK---LR 257

Query: 92  RIVGT 96
            + GT
Sbjct: 258 ELCGT 262

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 56.8 bits (138), Expect = 1e-10
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           + +   + +G+ YL+E     VIH+DL A N L+ E+   K+SDFG+ R  + D   ++T
Sbjct: 107 LGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSST 163

Query: 91  N 91
            
Sbjct: 164 G 164

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 56.8 bits (138), Expect = 1e-10
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
               L     + +   I +G+ +++E +    IH+DL+A+NIL+ + L  KI+DFGLAR+
Sbjct: 102 SGIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARL 158

Query: 81  FVKDD 85
              ++
Sbjct: 159 IEDNE 163

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 56.8 bits (138), Expect = 1e-10
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
               L+    + +   + +G+ +L+ +     IH+DL A N L+D DL  K+SDFG+ R 
Sbjct: 97  HGKGLEPSQLLEMCYDVCEGMAFLESHQ---FIHRDLAARNCLVDRDLCVKVSDFGMTRY 153

Query: 81  FVKDD 85
            + D 
Sbjct: 154 VLDDQ 158

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 3/61 (4%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           +  K  I ++  ++ G+ YL+E +    +H+DL A N+LL     +KISDFGL++    D
Sbjct: 114 VKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRAD 170

Query: 85  D 85
           +
Sbjct: 171 E 171

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 4/64 (6%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
                 + +++G+  G+ YL +      +H+DL A N+L+D +L  K+SDFGL+R  ++D
Sbjct: 148 FTIMQLVGMLRGVGAGMRYLSDLG---YVHRDLAARNVLVDSNLVCKVSDFGLSR-VLED 203

Query: 85  DLEA 88
           D +A
Sbjct: 204 DPDA 207

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 56.8 bits (137), Expect = 1e-10
 Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 6/66 (9%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTN 91
            +   + +GL YL    K  ++H+D+K SNIL++   + K+ DFG++   +  D  AN+ 
Sbjct: 135 KVSIAVIKGLTYL--REKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLI--DSMANSF 190

Query: 92  RIVGTQ 97
             VGT+
Sbjct: 191 --VGTR 194

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
            R +L     +     + + + YL+  +    +H+DL A N+L+ ED  +K+SDFGL +
Sbjct: 282 GRSVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTK 337

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           L  KT + ++     G+ YL+       IH+DL A N L+ E    KISDFG++R     
Sbjct: 210 LRVKTLLQMVGDAAAGMEYLESKC---CIHRDLAARNCLVTEKNVLKISDFGMSREEADG 266

Query: 85  DLEA 88
              A
Sbjct: 267 VYAA 270

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 20  IRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + R  +     +   Q I +G+ YL        IH+DL A N+LLD D   KI DFGLA+
Sbjct: 126 LPRHSIGLAQLLLFAQQICEGMAYLHAQH---YIHRDLAARNVLLDNDRLVKIGDFGLAK 182

Query: 80  IFVKDD 85
              +  
Sbjct: 183 AVPEGH 188

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 11/75 (14%)

Query: 22  RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
           R +  +      +Q +   L ++       V+H+D+K +N+ +      K+ D GL R F
Sbjct: 136 RTVWKY-----FVQ-LCSALEHMHSRR---VMHRDIKPANVFITATGVVKLGDLGLGRFF 186

Query: 82  VKDDLEANTNRIVGT 96
                 A++  +VGT
Sbjct: 187 SSKTTAAHS--LVGT 199

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
            +   C+HI   I + + +L       ++H+DLK SNI    D   K+ DFGL     +D
Sbjct: 115 RERSVCLHIFLQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQD 171

Query: 85  DLEANT 90
           + E   
Sbjct: 172 EEEQTV 177

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTN 91
            I++ + + +  L + +   ++H+DLK  NILLD+D+  K++DFG +      +      
Sbjct: 128 KIMRALLEVICALHKLN---IVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEK---LR 181

Query: 92  RIVGT 96
            + GT
Sbjct: 182 EVCGT 186

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
            +  +  +  ++    I +G+ YL++     ++H+DL A N+L+      KI+DFGLA++
Sbjct: 110 HKDNIGSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKL 166

Query: 81  FVKDDLEANTN 91
              ++ E +  
Sbjct: 167 LGAEEKEYHAE 177

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           ++ K  +     I +G+ YL        +H+DL A N+L++ + + KI DFGL +    D
Sbjct: 123 INLKQQLKYAVQICKGMDYLGSRQ---YVHRDLAARNVLVESEHQVKIGDFGLTKAIETD 179

Query: 85  D 85
            
Sbjct: 180 K 180

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           + ++ I  G  YL       VIH+DLK  N+ L+EDL+ KI DFGLA     D 
Sbjct: 119 YYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG 169

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 56.2 bits (135), Expect = 2e-10
 Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 4/74 (5%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           L     + +   + + L  L  Y    ++H  L+  +I+LD+     ++ F         
Sbjct: 208 LVHHARLQLTLQVIRLLASLHHYG---LVHTYLRPVDIVLDQRGGVFLTGFEHLVR-DGA 263

Query: 85  DLEANTNRIVGTQE 98
              +   R     E
Sbjct: 264 SAVSPIGRGFAPPE 277

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           LD    +     I +G+ YL        +H+DL A NIL++ +   KI+DFGLA++   D
Sbjct: 124 LDASRLLLYSSQICKGMEYLGSRR---CVHRDLAARNILVESEAHVKIADFGLAKLLPLD 180

Query: 85  D 85
            
Sbjct: 181 K 181

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 55.7 bits (135), Expect = 3e-10
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
                 + +G+ YL+       IH+DL A N+LL      KI DFGL R   ++D
Sbjct: 124 SRYAVQVAEGMGYLESKR---FIHRDLAARNLLLATRDLVKIGDFGLMRALPQND 175

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 55.4 bits (134), Expect = 4e-10
 Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           ++    I +G+ YL+E+    ++H++L A N+LL    + +++DFG+A +   DD
Sbjct: 118 LNWGVQIAKGMYYLEEHG---MVHRNLAARNVLLKSPSQVQVADFGVADLLPPDD 169

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 55.4 bits (133), Expect = 4e-10
 Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 1   MLMLQTVQLYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKAS 60
             M   +Q +  ++       +  L     + +   + + L  L  Y    ++H  L+  
Sbjct: 180 PRMQSNLQTFGEVLLSHSSTHKS-LVHHARLQLTLQVIRLLASLHHYG---LVHTYLRPV 235

Query: 61  NILLDEDLKSKISDFGLAR 79
           +I+LD+     ++ F    
Sbjct: 236 DIVLDQRGGVFLTGFEHLV 254

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 55.0 bits (133), Expect = 5e-10
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 6/65 (9%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTN 91
            + + IT+G+ Y+  +SK + I++DLK SNI L +  + KI DFGL     K+D +    
Sbjct: 126 ELFEQITKGVDYI--HSKKL-INRDLKPSNIFLVDTKQVKIGDFGLVTSL-KNDGKRTR- 180

Query: 92  RIVGT 96
              GT
Sbjct: 181 -SKGT 184

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 54.9 bits (133), Expect = 5e-10
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           +     I + + YL+  +    +H+D+   NIL+      K+ DFGL+R    +D
Sbjct: 116 VLYSLQICKAMAYLESIN---CVHRDIAVRNILVASPECVKLGDFGLSRYIEDED 167

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 54.9 bits (133), Expect = 5e-10
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
            R +L     +     + + + YL        +H+DL A N+L+ ED  +K+SDFGL +
Sbjct: 110 GRSVLGGDCLLKFSLDVCEAMEYL---EGNNFVHRDLAARNVLVSEDNVAKVSDFGLTK 165

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 55.0 bits (133), Expect = 5e-10
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
                  Q + +G+ YL       +IH+D+K SN+L+ ED   KI+DFG++  F   D
Sbjct: 137 DQARFYFQDLIKGIEYLHYQK---IIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSD 191

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 55.1 bits (132), Expect = 5e-10
 Identities = 10/79 (12%), Positives = 21/79 (26%), Gaps = 3/79 (3%)

Query: 1   MLMLQTVQLYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKAS 60
           M         L+   D   + R          +   + +    LQ      ++H      
Sbjct: 167 MPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKG---LVHGHFTPD 223

Query: 61  NILLDEDLKSKISDFGLAR 79
           N+ +  D +  + D     
Sbjct: 224 NLFIMPDGRLMLGDVSALW 242

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 55.0 bits (133), Expect = 5e-10
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           +D    +     I +G+ YL        IH+DL   NIL++ + + KI DFGL ++  +D
Sbjct: 111 IDHIKLLQYTSQICKGMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVLPQD 167

Query: 85  D 85
            
Sbjct: 168 K 168

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 54.7 bits (132), Expect = 6e-10
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           +D    +     I +G+ YL        IH+DL   NIL++ + + KI DFGL ++  +D
Sbjct: 142 IDHIKLLQYTSQICKGMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVLPQD 198

Query: 85  D 85
            
Sbjct: 199 K 199

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 54.7 bits (132), Expect = 6e-10
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTN 91
            +   I + L YL    K  VIH+D+K SNILLDE  + K+ DFG++   V DD   + +
Sbjct: 128 KMTVAIVKALYYL--KEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLV-DDKAKDRS 184

Query: 92  RIVGTQ 97
              G  
Sbjct: 185 --AGCA 188

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 54.5 bits (132), Expect = 6e-10
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           LD  + I     ++  L YL+       +H+D+ A N+L+  +   K+ DFGL+R     
Sbjct: 113 LDLASLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDS 169

Query: 85  D 85
            
Sbjct: 170 T 170

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 54.5 bits (132), Expect = 7e-10
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYS-KLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
               L   T I+    I  G+    +++  + ++H+D+K  NIL+D +   KI DFG+A+
Sbjct: 104 SHGPLSVDTAINFTNQILDGI----KHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAK 159

Query: 80  IFVKDDLEANTNRIVGT 96
             + +     TN ++GT
Sbjct: 160 A-LSETSLTQTNHVLGT 175

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 54.5 bits (132), Expect = 7e-10
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           H +  I  G+LYL  +    ++H+DL  SN+LL  ++  KI+DFGLA       
Sbjct: 116 HFMHQIITGMLYLHSHG---ILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPH 166

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 54.6 bits (132), Expect = 7e-10
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTN 91
            + + I + L Y+  +S+ I IH+DLK  NI +DE    KI DFGLA+   +       +
Sbjct: 120 RLFRQILEALSYI--HSQGI-IHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLD 176

Query: 92  RIVGTQESYNL 102
                  S NL
Sbjct: 177 SQNLPGSSDNL 187

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 54.5 bits (132), Expect = 8e-10
 Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I   L YL       +IH+DLK  NILL+ED+  +I+DFG A++   +  +A  N  VGT
Sbjct: 139 IVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGT 195

Query: 97  QE 98
            +
Sbjct: 196 AQ 197

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 54.1 bits (131), Expect = 9e-10
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 16  DVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDF 75
           D D   +  L+    +H++  I  G+ YL   S   V+H+DL   N+L+ + L  KISD 
Sbjct: 116 DDDRTVKSALEPPDFVHLVAQIAAGMEYL---SSHHVVHKDLATRNVLVYDKLNVKISDL 172

Query: 76  GLARIFVKDD 85
           GL R     D
Sbjct: 173 GLFREVYAAD 182

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 54.4 bits (131), Expect = 9e-10
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
                  K  I     + +G+ +L        +H+DL A N +LDE    K++DFGLAR 
Sbjct: 185 ETHNPTVKDLIGFGLQVAKGMKFLASKK---FVHRDLAARNCMLDEKFTVKVADFGLARD 241

Query: 81  FVKDD 85
               +
Sbjct: 242 MYDKE 246

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 54.1 bits (130), Expect = 1e-09
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 26  DWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           +   C+HI   I + + +L  +SK + +H+DLK SNI    D   K+ DFGL     +D+
Sbjct: 162 EHGVCLHIFIQIAEAVEFL--HSKGL-MHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDE 218

Query: 86  LEANTNRIVGTQESYN 101
            E      +    ++ 
Sbjct: 219 EEQTVLTPMPAYATHT 234

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 54.0 bits (130), Expect = 1e-09
 Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 18/92 (19%)

Query: 10  YLYLI---------FD--VDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLK 58
           +  LI         +    +P   + L     + +++ +  G+ +L+E     ++H+++K
Sbjct: 83  HKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENG---IVHRNIK 139

Query: 59  ASNILL----DEDLKSKISDFGLARIFVKDDL 86
             NI+     D     K++DFG AR    D+ 
Sbjct: 140 PGNIMRVIGEDGQSVYKLTDFGAARELEDDEQ 171

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 54.1 bits (130), Expect = 1e-09
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           LD  + I     ++  L YL+       +H+D+ A N+L+  +   K+ DFGL+R     
Sbjct: 488 LDLASLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDS 544

Query: 85  D 85
            
Sbjct: 545 T 545

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 53.7 bits (129), Expect = 1e-09
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           +  G+ Y+       ++H+DLK +N L+++D   K+ DFGLAR     +   +   I   
Sbjct: 165 LLVGVKYVHSAG---ILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPR 221

Query: 97  QESYN 101
           ++  N
Sbjct: 222 EDDMN 226

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTN 91
            I     + L +L     L +IH+D+K SNILLD     K+ DFG++   V  D  A T 
Sbjct: 129 KITLATVKALNHL--KENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLV--DSIAKTR 184

Query: 92  RIVGTQ 97
              G +
Sbjct: 185 -DAGCR 189

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIF---VKDDLEANTNRIV 94
           ++H+D+KA+N+L+  D   K++DFGLAR F           TNR+V
Sbjct: 145 ILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVV 190

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           +HI   I  G++YL   +    +H+DL   N L+  +L  KI DFG++R     D
Sbjct: 136 LHIASQIASGMVYL---ASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTD 187

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 19/107 (17%), Positives = 43/107 (40%), Gaps = 23/107 (21%)

Query: 7   VQLY--------LYLI--------FDVDPIRRF-ILDWKTCIHIIQGITQGLLYLQEYSK 49
           ++LY        +Y++             +++   +D        + + + +  + ++  
Sbjct: 91  IRLYDYEITDQYIYMVMECGNIDLNSW--LKKKKSIDPWERKSYWKNMLEAVHTIHQHG- 147

Query: 50  LIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
             ++H DLK +N L+ +    K+ DFG+A     D      +  VGT
Sbjct: 148 --IVHSDLKPANFLIVDG-MLKLIDFGIANQMQPDTTSVVKDSQVGT 191

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 20/57 (35%), Positives = 30/57 (52%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGTQESYNLWKDGKG 108
           +IH+DLK +N LL++D   K+ DFGLAR    +      N +   +E     K+ K 
Sbjct: 150 IIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKK 206

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 15  FDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISD 74
              + + +  L  +  I     + +G+ +L   +    IH+DL A NILL E    KI D
Sbjct: 135 VAPEDLYKDFLTLEHLICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICD 191

Query: 75  FGLARIFVKDD 85
           FGLAR   KD 
Sbjct: 192 FGLARDIYKDP 202

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
            +     K  I     + +G+ YL E      +H+DL A N +LDE    K++DFGLAR 
Sbjct: 117 PQRNPTVKDLISFGLQVARGMEYLAEQK---FVHRDLAARNCMLDESFTVKVADFGLARD 173

Query: 81  FVKDD 85
            +  +
Sbjct: 174 ILDRE 178

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
                  K  I     + +G+ YL        +H+DL A N +LDE    K++DFGLAR 
Sbjct: 121 ETHNPTVKDLIGFGLQVAKGMKYLASKK---FVHRDLAARNCMLDEKFTVKVADFGLARD 177

Query: 81  FVKDD 85
               +
Sbjct: 178 MYDKE 182

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 53.3 bits (128), Expect = 2e-09
 Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 18/92 (19%)

Query: 10  YLYLI---------FD--VDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLK 58
           +  LI         +    +P   + L     + +++ +  G+ +L+E     ++H+++K
Sbjct: 83  HKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENG---IVHRNIK 139

Query: 59  ASNILL----DEDLKSKISDFGLARIFVKDDL 86
             NI+     D     K++DFG AR    D+ 
Sbjct: 140 PGNIMRVIGEDGQSVYKLTDFGAARELEDDEQ 171

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYS-KLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
               +  K  I +I    Q L     +S +  +IH+D+K +NI++      K+ DFG+AR
Sbjct: 109 TEGPMTPKRAIEVIADACQAL----NFSHQNGIIHRDVKPANIMISATNAVKVMDFGIAR 164

Query: 80  IFVKDDLE-ANTNRIVGT 96
                      T  ++GT
Sbjct: 165 AIADSGNSVTQTAAVIGT 182

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           +H    + QG+ +L   +    IH+D+ A N+LL     +KI DFGLAR  + D 
Sbjct: 167 LHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDS 218

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           L  +  +H    + +G+ YL   S+   IH+DL A NIL+ E+  +KI+DFGL+R
Sbjct: 139 LSSQQLLHFAADVARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLSR 190

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 53.2 bits (128), Expect = 3e-09
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 17/101 (16%)

Query: 10  YLYLI--------FDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASN 61
           + Y+          +    + F       I ++Q  T GL +L     L ++H+DLK  N
Sbjct: 92  FQYIAIELCAATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHS---LNIVHRDLKPHN 148

Query: 62  ILLDE-----DLKSKISDFGLARIFVKDDLE-ANTNRIVGT 96
           IL+        +K+ ISDFGL +         +  + + GT
Sbjct: 149 ILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGT 189

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           +  +T +  +  I  G+ YL   S    +H+DL A N +L +D+   ++DFGL++     
Sbjct: 144 IPLQTLLKFMVDIALGMEYL---SNRNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSG 200

Query: 85  D 85
           D
Sbjct: 201 D 201

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + +   +  G++YL   + L  +H+DL   N L+ + L  KI DFG++R
Sbjct: 161 LAVASQVAAGMVYL---AGLHFVHRDLATRNCLVGQGLVVKIGDFGMSR 206

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 52.8 bits (127), Expect = 3e-09
 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 5/64 (7%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNR 92
           I + I +GL +L ++     IH+D+K  N+LL E+ + K+ DFG++    +     NT  
Sbjct: 134 ICREILRGLSHLHQHKV---IHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNT-- 188

Query: 93  IVGT 96
            +GT
Sbjct: 189 FIGT 192

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 53.0 bits (127), Expect = 3e-09
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 7/62 (11%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I  GL ++       V+++DLK +NILLDE    +ISD GLA     D  +   +  VGT
Sbjct: 301 IILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLA----CDFSKKKPHASVGT 353

Query: 97  QE 98
             
Sbjct: 354 HG 355

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 52.8 bits (127), Expect = 3e-09
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 17/98 (17%)

Query: 9   LYLYLIFDVDP------IRRFILDWK--TCIHI---IQGITQGLLYLQEYSKLIVIHQDL 57
           +YL L+ D  P       R +    +    I++   +  + + L Y+       + H+D+
Sbjct: 126 VYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDI 182

Query: 58  KASNILLDEDLKS-KISDFGLARIFVKDDLEANTNRIV 94
           K  N+LLD D    K+ DFG A+  V+   E N + I 
Sbjct: 183 KPQNLLLDPDTAVLKLCDFGSAKQLVRG--EPNVSYIC 218

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 25/103 (24%)

Query: 9   LYLYLIFDVDP--IRRFILDWKTCIHIIQGIT------------QGLLYLQEYSKLIVIH 54
           +YL ++ +  P  + R     +                      + +  L   S + V H
Sbjct: 99  IYLNVVMEYVPDTLHRCC---RNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPS-VNVCH 154

Query: 55  QDLKASNILLDE---DLKSKISDFGLARIFVKDDLEANTNRIV 94
           +D+K  N+L++E    L  K+ DFG A+       E N   I 
Sbjct: 155 RDIKPHNVLVNEADGTL--KLCDFGSAKKLSPS--EPNVAYIC 193

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 52.6 bits (127), Expect = 3e-09
 Identities = 17/40 (42%), Positives = 26/40 (65%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTN 91
           VIH+DLK SN+L++ +   K+ DFGLARI  +   + +  
Sbjct: 133 VIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEP 172

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           + +K  +     + +G+ YL   +    IH+DL A N+L+ E+   KI+DFGLAR     
Sbjct: 200 MTFKDLVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI 256

Query: 85  D 85
           D
Sbjct: 257 D 257

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 52.9 bits (127), Expect = 3e-09
 Identities = 16/95 (16%), Positives = 39/95 (41%), Gaps = 13/95 (13%)

Query: 9   LYLYL------IFDVDPIRRF-ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASN 61
           +Y+ +      +     +++   +D        + + + +  + ++    ++H DLK +N
Sbjct: 131 IYMVMECGNIDLNSW--LKKKKSIDPWERKSYWKNMLEAVHTIHQHG---IVHSDLKPAN 185

Query: 62  ILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
            L+ +    K+ DFG+A     D      +  VG 
Sbjct: 186 FLIVDG-MLKLIDFGIANQMQPDTTSVVKDSQVGA 219

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 15/74 (20%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
               L +L       ++H D+K +NI L    + K+ DFGL                 G 
Sbjct: 166 TLLALAHLHSQG---LVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGA-GEV--QEGD 219

Query: 97  ---------QESYN 101
                    Q SY 
Sbjct: 220 PRYMAPELLQGSYG 233

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           + +K  +     + +G+ YL   +    IH+DL A N+L+ E+   KI+DFGLAR     
Sbjct: 154 MTFKDLVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI 210

Query: 85  D 85
           D
Sbjct: 211 D 211

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 52.4 bits (126), Expect = 4e-09
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           +D        + + + +  + ++    ++H DLK +N L+ +    K+ DFG+A     D
Sbjct: 105 IDPWERKSYWKNMLEAVHTIHQHG---IVHSDLKPANFLIVDG-MLKLIDFGIANQMQPD 160

Query: 85  DLEANTNRIVGT 96
                 +  VGT
Sbjct: 161 TTSVVKDSQVGT 172

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 52.4 bits (126), Expect = 4e-09
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGTQESYN 101
           ++H+D+K SNILL+ +   K++DFGL+R FV      N   +   + + N
Sbjct: 130 LLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTEN 179

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 52.3 bits (126), Expect = 4e-09
 Identities = 18/38 (47%), Positives = 23/38 (60%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEAN 89
           V+H+DLK SN+LL+     KI DFGLAR+   D     
Sbjct: 149 VLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTG 186

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 52.8 bits (126), Expect = 4e-09
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 9/81 (11%)

Query: 9   LYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL 68
           L  YL           L       ++  I+  L YL E     +IH+DLK  NI+L    
Sbjct: 105 LRKYL---NQFENCCGLKEGPIRTLLSDISSALRYLHENR---IIHRDLKPENIVLQPGP 158

Query: 69  KS---KISDFGLARIFVKDDL 86
           +    KI D G A+   + +L
Sbjct: 159 QRLIHKIIDLGYAKELDQGEL 179

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 15/34 (44%), Positives = 19/34 (55%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           V+H+DL   NILL ++    I DF LAR    D 
Sbjct: 155 VVHRDLHPGNILLADNNDITICDFNLAREDTADA 188

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 52.5 bits (126), Expect = 5e-09
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL--DEDLKSKISDFGLARIFVKDD 85
           K   +I++ I   L YL       + H+D+K  N L   ++  + K+ DFGL++ F K +
Sbjct: 168 KLISNIMRQIFSALHYLHNQG---ICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLN 224

Query: 86  LEANT--NRIVGT 96
                      GT
Sbjct: 225 NGEYYGMTTKAGT 237

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           + +G+ +L   +    IH+DL A NILL     +KI DFGLAR    D 
Sbjct: 154 VAKGMAFL---ASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDS 199

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 51.8 bits (125), Expect = 6e-09
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 12/80 (15%)

Query: 11  LYLIFD---------VDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASN 61
           L L+F+         +D +    +  +T   ++  + +GL +L  +    V+H+DLK  N
Sbjct: 94  LTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHR---VVHRDLKPQN 150

Query: 62  ILLDEDLKSKISDFGLARIF 81
           IL+    + K++DFGLARI+
Sbjct: 151 ILVTSSGQIKLADFGLARIY 170

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 51.8 bits (125), Expect = 6e-09
 Identities = 15/35 (42%), Positives = 24/35 (68%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           V+H+DLK  N+LLD  + +KI+DFGL+ +    + 
Sbjct: 132 VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEF 166

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 51.9 bits (125), Expect = 6e-09
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 19/99 (19%)

Query: 9   LYLYLIF-----DVDPIRRFILDWKTCIHII-------QGITQGLLYLQEYSKLIVIHQD 56
           ++L L+       V    R     K  + ++       Q + + L Y+     + + H+D
Sbjct: 111 VFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQ-LLRSLAYIH---SIGICHRD 166

Query: 57  LKASNILLDEDLKS-KISDFGLARIFVKDDLEANTNRIV 94
           +K  N+LLD      K+ DFG A+I +    E N + I 
Sbjct: 167 IKPQNLLLDPPSGVLKLIDFGSAKILIAG--EPNVSYIC 203

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 52.0 bits (125), Expect = 6e-09
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           LD     +I + +   + YL+      +IH+D+K  NI++ ED   K+ DFG A    + 
Sbjct: 127 LDEPLASYIFRQLVSAVGYLR---LKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERG 183

Query: 85  DL 86
            L
Sbjct: 184 KL 185

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 51.7 bits (124), Expect = 7e-09
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDED-LKSKISDFGLARIFVKDDLEANTNR--- 92
             +GL YL       ++H D+KA N+LL  D  ++ + DFG A     D L  +      
Sbjct: 159 ALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDY 215

Query: 93  IVGT 96
           I GT
Sbjct: 216 IPGT 219

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 51.9 bits (125), Expect = 7e-09
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
                 I +   I  G+ YL   +    +H+DL A N ++ ED   KI DFG+ R   + 
Sbjct: 135 PSLSKMIQMAGEIADGMAYL---NANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET 191

Query: 85  D 85
           D
Sbjct: 192 D 192

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 52.0 bits (125), Expect = 7e-09
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           + +G+ YL   +    IH+DL A N+L+ ED   KI+DFGLAR     D
Sbjct: 200 VARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID 245

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 51.9 bits (125), Expect = 7e-09
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 20  IRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           ++   L       ++  + +GL Y+       +IH+DLK  N+ ++ED + KI DFGLAR
Sbjct: 120 MKHEKLGEDRIQFLVYQMLKGLRYIHAAG---IIHRDLKPGNLAVNEDCELKILDFGLAR 176

Query: 80  IF 81
             
Sbjct: 177 QA 178

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 51.8 bits (124), Expect = 8e-09
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           +IH+DLK SNI++  D   KI DFGLAR      
Sbjct: 185 IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF 218

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 51.7 bits (124), Expect = 8e-09
 Identities = 15/35 (42%), Positives = 24/35 (68%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           V+H+DLK  N+LLD  + +KI+DFGL+ +    + 
Sbjct: 137 VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEF 171

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 51.5 bits (124), Expect = 8e-09
 Identities = 16/35 (45%), Positives = 25/35 (71%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           ++H+DLK  N+LLD++L  KI+DFGL+ I    + 
Sbjct: 129 IVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNF 163

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 51.2 bits (123), Expect = 9e-09
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNR 92
           + +   Q L +L        IH+D+K+ NILL  D   K++DFG       +  + +T  
Sbjct: 121 VCRECLQALEFLHSNQV---IHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST-- 175

Query: 93  IVGT 96
           +VGT
Sbjct: 176 MVGT 179

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 51.3 bits (123), Expect = 9e-09
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTN 91
            I     + + ++    K  +IH+DLK  N+LL      K+ DFG A         + + 
Sbjct: 140 KIFYQTCRAVQHMH-RQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSA 198

Query: 92  RIVGTQE 98
           +     E
Sbjct: 199 QRRALVE 205

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 4/58 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIV 94
           + QGL +  E     ++H+DLK  N+L+++  + K+ DFGLAR F    +   ++ +V
Sbjct: 117 LLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDFGLARAF-GIPVNTFSSEVV 170

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           + I + +  G+ YL   S+   +H+DL   N L+ E++  KI+DFGL+R     D
Sbjct: 177 LCIARQVAAGMAYL---SERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSAD 228

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 13/93 (13%)

Query: 11  LYLIFD---------VDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASN 61
           LYL+F+         +D      +        +  + QGL +   +    V+H+DLK  N
Sbjct: 77  LYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHR---VLHRDLKPQN 133

Query: 62  ILLDEDLKSKISDFGLARIFVKDDLEANTNRIV 94
           +L++ +   K++DFGLAR F    +   T+ +V
Sbjct: 134 LLINTEGAIKLADFGLARAF-GVPVRTYTHEVV 165

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           L  +T +  +  I  G+ YL   S    IH+DL A N +L ED+   ++DFGL+R
Sbjct: 134 LPLQTLVRFMVDIACGMEYL---SSRNFIHRDLAARNCMLAEDMTVCVADFGLSR 185

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 23/49 (46%), Positives = 35/49 (71%), Gaps = 3/49 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           I+QG+ YL   +++ ++H+DL A NIL+ E  K KISDFGL+R   ++D
Sbjct: 159 ISQGMQYL---AEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEED 204

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNR 92
           + + + + L +L        IH+DLKA N+L+  +   +++DFG++   +K   + ++  
Sbjct: 122 VCRQMLEALNFLHSKRI---IHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDS-- 176

Query: 93  IVGT 96
            +GT
Sbjct: 177 FIGT 180

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
           + +G+ +L+  S    +H+DL A N+L+      KI DFGLAR  + D 
Sbjct: 181 VAKGMEFLEFKS---CVHRDLAARNVLVTHGKVVKICDFGLARDIMSDS 226

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 6/67 (8%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL-ARIFVKDDLEANTN 91
           I++ + +GL YL +  +   IH+D+KA NILL ED   +I+DFG+ A +    D+  N  
Sbjct: 126 ILREVLEGLEYLHKNGQ---IHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKV 182

Query: 92  R--IVGT 96
           R   VGT
Sbjct: 183 RKTFVGT 189

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 51.1 bits (122), Expect = 1e-08
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 18  DPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL 77
           + + +  L  +  I     + +G+ +L   +    IH+DL A NILL E    KI DFGL
Sbjct: 183 EDLYKDFLTLEHLICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGL 239

Query: 78  ARIFVKDD 85
           AR   KD 
Sbjct: 240 ARDIYKDP 247

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 51.1 bits (122), Expect = 1e-08
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT-- 90
           I+QG+ + L Y+        +H+ +KAS+IL+  D K  +S        +          
Sbjct: 133 ILQGVLKALDYIHHMGY---VHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVH 189

Query: 91  ---NRIVGT 96
                 V  
Sbjct: 190 DFPKYSVKV 198

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 50.6 bits (122), Expect = 1e-08
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 12/80 (15%)

Query: 11  LYLIFD---------VDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASN 61
           + L+F+         +D      L  +T   +++   +GL +L       ++H+DLK  N
Sbjct: 94  VTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANC---IVHRDLKPEN 150

Query: 62  ILLDEDLKSKISDFGLARIF 81
           IL+      K++DFGLARI+
Sbjct: 151 ILVTSGGTVKLADFGLARIY 170

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I  GL +L + +   +I++DLK  N+LLD+D   +ISD GLA        +       GT
Sbjct: 298 IVSGLEHLHQRN---IIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKG--YAGT 352

Query: 97  QE 98
             
Sbjct: 353 PG 354

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 18/84 (21%)

Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD-------------EDLKSKISD 74
              I +++ I  G+ +L     L +IH+DLK  NIL+              E+L+  ISD
Sbjct: 115 YNPISLLRQIASGVAHLHS---LKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISD 171

Query: 75  FGLARIFVKDD--LEANTNRIVGT 96
           FGL +           N N   GT
Sbjct: 172 FGLCKKLDSGQSSFRTNLNNPSGT 195

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 5/64 (7%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNR 92
           I+Q   +GL YL    K   IH+D+KA NILL+ +  +K++DFG+A        + NT  
Sbjct: 130 ILQSTLKGLEYLHFMRK---IHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT-- 184

Query: 93  IVGT 96
           ++GT
Sbjct: 185 VIGT 188

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 8/68 (11%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILL---DEDLKSKISDFGLARIFVKDDLEA 88
           H ++ I + L Y  + +   +IH+D+K   +LL   +     K+  FG+A    +  L A
Sbjct: 134 HYMRQILEALRYCHDNN---IIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVA 190

Query: 89  NTNRIVGT 96
                VGT
Sbjct: 191 GG--RVGT 196

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           +IH+DLK SNI++  D   KI DFGLAR      +
Sbjct: 148 IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM 182

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
           ++H+DLKA N+LLD D+  KI+DFG +  F     
Sbjct: 135 IVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGK 169

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIV 94
           + +GL Y        V+H+DLK  N+L++E  + K++DFGLAR       +   N +V
Sbjct: 109 LLRGLAYCHRQK---VLHRDLKPQNLLINERGELKLADFGLARAK-SIPTKTYDNEVV 162

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 50.6 bits (122), Expect = 2e-08
 Identities = 18/58 (31%), Positives = 36/58 (62%), Gaps = 4/58 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIV 94
           + +G+ +  ++    ++H+DLK  N+L++ D   K++DFGLAR F    + + T+ +V
Sbjct: 128 LLRGVAHCHQHR---ILHRDLKPQNLLINSDGALKLADFGLARAF-GIPVRSYTHEVV 181

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 50.6 bits (122), Expect = 2e-08
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 4/58 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIV 94
           +  G+ Y  +     V+H+DLK  N+L++ + + KI+DFGLAR F    +   T+ IV
Sbjct: 109 LLNGIAYCHDRR---VLHRDLKPQNLLINREGELKIADFGLARAF-GIPVRKYTHEIV 162

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 50.6 bits (122), Expect = 2e-08
 Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 4/58 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIV 94
           + +GL +    +   V+H+DLK  N+L++ + + K+++FGLAR F    +   +  +V
Sbjct: 110 LLKGLGFCHSRN---VLHRDLKPQNLLINRNGELKLANFGLARAF-GIPVRCYSAEVV 163

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARI---FVKDDL 86
           ++H+D+K  N+LL      KIS  G+A     F  DD 
Sbjct: 130 IVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDT 167

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 4/58 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIV 94
             QGL YL ++    ++H+DLK +N+LLDE+   K++DFGLA+ F      A T+++V
Sbjct: 121 TLQGLEYLHQHW---ILHRDLKPNNLLLDENGVLKLADFGLAKSF-GSPNRAYTHQVV 174

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 7/49 (14%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKS----KISDFGLARIF 81
           I  G+ YL       V+H+DLK +NIL+  +       KI+D G AR+F
Sbjct: 137 ILDGIHYLHANW---VLHRDLKPANILVMGEGPERGRVKIADMGFARLF 182

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNR 92
           + + + Q L YL        IH+D+K+ +ILL  D + K+SDFG      KD  +  +  
Sbjct: 146 VCEAVLQALAYLHAQGV---IHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKS-- 200

Query: 93  IVGT 96
           +VGT
Sbjct: 201 LVGT 204

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 17/28 (60%), Positives = 23/28 (82%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLAR 79
           +IH+DLK SN+ ++ED + KI DFGLAR
Sbjct: 153 IIHRDLKPSNLAVNEDCELKILDFGLAR 180

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 5/64 (7%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNR 92
           I++ I +GL YL    K   IH+D+KA+N+LL E  + K++DFG+A       ++ NT  
Sbjct: 124 ILREILKGLDYLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNT-- 178

Query: 93  IVGT 96
            VGT
Sbjct: 179 FVGT 182

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 9/64 (14%)

Query: 33  IIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNR 92
           +  G  QGL YL  ++    IH+D+KA NILL E    K+ DFG A I       AN+  
Sbjct: 159 VTHGALQGLAYLHSHNM---IHRDVKAGNILLSEPGLVKLGDFGSASIMAP----ANS-- 209

Query: 93  IVGT 96
            VGT
Sbjct: 210 FVGT 213

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 9/72 (12%)

Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL---DEDLKSKISDFGLARIFVKD 84
            TC      +   + YL E     +IH+DLK  N+LL   +ED   KI+DFG ++I  + 
Sbjct: 114 ATCKLYFYQMLLAVQYLHENG---IIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGET 170

Query: 85  DLEANTNRIVGT 96
            L      + GT
Sbjct: 171 SL---MRTLCGT 179

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 49.9 bits (120), Expect = 3e-08
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 13/80 (16%)

Query: 11  LYLIF---DVDPIRRFI------LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASN 61
           L+L+F   D   +   +      +       I     Q + +  +++    IH+D+K  N
Sbjct: 77  LHLVFEYCDHT-VLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHN---CIHRDVKPEN 132

Query: 62  ILLDEDLKSKISDFGLARIF 81
           IL+ +    K+ DFG AR+ 
Sbjct: 133 ILITKHSVIKLCDFGFARLL 152

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 9/72 (12%)

Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL---DEDLKSKISDFGLARIFVKD 84
            TC      +   + YL E     +IH+DLK  N+LL   +ED   KI+DFG ++I  + 
Sbjct: 239 ATCKLYFYQMLLAVQYLHENG---IIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGET 295

Query: 85  DLEANTNRIVGT 96
            L      + GT
Sbjct: 296 SL---MRTLCGT 304

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 49.9 bits (120), Expect = 3e-08
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
             I  +   L Y        VIH+D+K  N+LL    + KI+DFG +
Sbjct: 113 TYITELANALSYCHSKR---VIHRDIKPENLLLGSAGELKIADFGWS 156

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           +   L YLQ      +IH+D+K  NILLDE     I+DF +A +  ++        + GT
Sbjct: 124 LVMALDYLQNQR---IIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQ---ITTMAGT 177

Query: 97  QE 98
           + 
Sbjct: 178 KP 179

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 49.5 bits (119), Expect = 3e-08
 Identities = 21/45 (46%), Positives = 30/45 (66%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           + H+D+K  N+LLDE    KISDFGLA +F  ++ E   N++ GT
Sbjct: 126 ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 170

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 21/45 (46%), Positives = 30/45 (66%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           + H+D+K  N+LLDE    KISDFGLA +F  ++ E   N++ GT
Sbjct: 126 ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 170

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%)

Query: 11  LYLIF-----DVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD 65
            YL+      D+  I       +   +++  + +GL Y+       V+H+DLK  N+ ++
Sbjct: 104 FYLVMPFMQTDLQKIMGLKFSEEKIQYLVYQMLKGLKYIHSAG---VVHRDLKPGNLAVN 160

Query: 66  EDLKSKISDFGLARIF 81
           ED + KI DFGLAR  
Sbjct: 161 EDCELKILDFGLARHA 176

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 49.5 bits (119), Expect = 4e-08
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 13/80 (16%)

Query: 11  LYLIF---DVDPIRRFI------LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASN 61
            YL+F   D   I   +      LD++     +  I  G+ +   ++   +IH+D+K  N
Sbjct: 99  WYLVFEFVDHT-ILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHN---IIHRDIKPEN 154

Query: 62  ILLDEDLKSKISDFGLARIF 81
           IL+ +    K+ DFG AR  
Sbjct: 155 ILVSQSGVVKLCDFGFARTL 174

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 49.2 bits (118), Expect = 4e-08
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 11/63 (17%)

Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKS--------KISDFGLARIFV 82
           + + + +   + +L+E +   +IH ++ A NILL  +           K+SD G++   +
Sbjct: 116 LEVAKQLAAAMHFLEENT---LIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVL 172

Query: 83  KDD 85
             D
Sbjct: 173 PKD 175

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 52  VIHQDLKASNILLD-EDLKSKISDFGLARIFVKDDLEANTNRIV 94
           + H+D+K  N+L++ +D   K+ DFG A+  +    E +   I 
Sbjct: 162 ICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPS--EPSVAYIC 203

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 48.7 bits (117), Expect = 6e-08
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA 78
             ++ +   L Y  E     VIH+D+K  N+L+    + KI+DFG +
Sbjct: 118 TFMEELADALHYCHERK---VIHRDIKPENLLMGYKGELKIADFGWS 161

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 48.8 bits (117), Expect = 7e-08
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 9/63 (14%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKS-----KISDFGLARIFVKDDLEANTN 91
           +  G+ +         +H+DLK  N+LL     S     KI DFGLAR F    +   T+
Sbjct: 141 LINGVNFCHSRR---CLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAF-GIPIRQFTH 196

Query: 92  RIV 94
            I+
Sbjct: 197 EII 199

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 48.8 bits (117), Expect = 7e-08
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 8/68 (11%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILL---DEDLKSKISDFGLARIFVKDDLEA 88
           +I++ +   + ++ +     V+H+DLK  N+L    +++L+ KI DFG AR+   D+   
Sbjct: 110 YIMRKLVSAVSHMHDVG---VVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPL 166

Query: 89  NTNRIVGT 96
            T     T
Sbjct: 167 KT--PCFT 172

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 49.0 bits (117), Expect = 8e-08
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I  GL  L       ++++DLK  NILLD+    +ISD GLA    +          VGT
Sbjct: 295 ICCGLEDLHRER---IVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQT---IKGRVGT 348

Query: 97  QE 98
             
Sbjct: 349 VG 350

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 48.8 bits (117), Expect = 8e-08
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 52  VIHQDLKASNILLD-EDLKSKISDFGLARIFVKDDLEAN 89
           V+H+DLK +N+ ++ EDL  KI DFGLARI         
Sbjct: 141 VLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKG 179

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 48.4 bits (116), Expect = 9e-08
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 9/69 (13%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILL---DEDLKS-KISDFGLARIFVKDDLE 87
            ++  IT+ + YL       V+H+DLK SNIL      + +S +I DFG A+    ++  
Sbjct: 120 AVLFTITKTVEYLHAQG---VVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGL 176

Query: 88  ANTNRIVGT 96
             T     T
Sbjct: 177 LMT--PCYT 183

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 48.4 bits (116), Expect = 9e-08
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYS-KLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           R+  L     + I++ I   L    + +      H+D+K  NIL+  D  + + DFG+A 
Sbjct: 127 RQGPLAPPRAVAIVRQIGSAL----DAAHAAGATHRDVKPENILVSADDFAYLVDFGIAS 182

Query: 80  IFVKDDLEANTNRIVGT 96
               D+        VGT
Sbjct: 183 A-TTDEKLTQLGNTVGT 198

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLD-EDLKSKISDFGLARIFVKDDLEANTNRIVG 95
           I +GL YL +     ++H+D+K  N+L++      KISDFG ++      +   T    G
Sbjct: 131 ILEGLKYLHDNQ---IVHRDIKGDNVLINTYSGVLKISDFGTSKRL--AGINPCTETFTG 185

Query: 96  T 96
           T
Sbjct: 186 T 186

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 20  IRRF-ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD-EDLKSKISDFGL 77
           ++RF ++  K      + I +GL +L   +  I IH+DLK  NI +       KI D GL
Sbjct: 120 LKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPI-IHRDLKCDNIFITGPTGSVKIGDLGL 178

Query: 78  ARI 80
           A +
Sbjct: 179 ATL 181

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 9/68 (13%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILL---DEDLKSKISDFGLARIFVKDDLEA 88
            II+ +  G+ Y+ +     ++H+DLK  NILL   ++D   KI DFGL+  F ++    
Sbjct: 125 RIIKQVFSGITYMHK---HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTK-- 179

Query: 89  NTNRIVGT 96
                +GT
Sbjct: 180 -MKDRIGT 186

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL---DEDLKSKISDFGLARIFVKD 84
              I +I+ I +G+ YL + +   ++H DLK  NILL         KI DFG++R     
Sbjct: 131 NDVIRLIKQILEGVYYLHQNN---IVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHA 187

Query: 85  DLEANTNRIVGT 96
                   I+GT
Sbjct: 188 C---ELREIMGT 196

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 10/72 (13%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           L     I  +  I   L YL       +++ DLK  NI+L E+ + K+ D G        
Sbjct: 179 LPVAEAIAYLLEILPALSYLHSIG---LVYNDLKPENIMLTEE-QLKLIDLGAVSRI--- 231

Query: 85  DLEANTNRIVGT 96
               +   + GT
Sbjct: 232 ---NSFGYLYGT 240

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 17/98 (17%)

Query: 10  YLYLIFD-------VDPI--RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKAS 60
            + LI +        D I    + +     I+ ++   +GL ++ E+S   ++H D+K  
Sbjct: 122 EMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHS---IVHLDIKPE 178

Query: 61  NILL--DEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           NI+    +    KI DFGLA     D+          T
Sbjct: 179 NIMCETKKASSVKIIDFGLATKLNPDE---IVKVTTAT 213

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 6/52 (11%)

Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD---EDLKSKISDFGLAR 79
           +H+ + I  G  YL+E      IH+D+ A N LL        +KI DFG+AR
Sbjct: 184 LHVARDIACGCQYLEENH---FIHRDIAARNCLLTCPGPGRVAKIGDFGMAR 232

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 52  VIHQDLKASNILLDEDLKS--KISDFGLARIFVKDDL 86
           + H+DLK  N LLD       KI DFG ++  V    
Sbjct: 137 ICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQ 173

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 9/68 (13%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILL---DEDLKSKISDFGLARIFVKDDLEA 88
           H IQ I + + Y        ++H++LK  N+LL    +    K++DFGLA   V D    
Sbjct: 132 HCIQQILESIAYCHSNG---IVHRNLKPENLLLASKAKGAAVKLADFGLAI-EVNDSEAW 187

Query: 89  NTNRIVGT 96
           +     GT
Sbjct: 188 HG--FAGT 193

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL--DEDLKSKISDFGLARIFVKDD 85
           +  +  +  + + L +L  ++   + H D++  NI+         KI +FG AR     D
Sbjct: 102 REIVSYVHQVCEALQFLHSHN---IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGD 158

Query: 86  LEANTNRIVGT 96
              N   +   
Sbjct: 159 ---NFRLLFTA 166

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 8/68 (11%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILL---DEDLKSKISDFGLARIFVKDDLEA 88
           H IQ I + +L+  +   + V+H++LK  N+LL    +    K++DFGLA     +    
Sbjct: 114 HCIQQILEAVLHCHQ---MGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAW 170

Query: 89  NTNRIVGT 96
                 GT
Sbjct: 171 FG--FAGT 176

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL--DEDLKSKISDFGLARIFVKDD 85
              I  ++ I +G+ ++    ++ ++H DLK  NIL    +  + KI DFGLAR +   +
Sbjct: 187 LDTILFMKQICEGIRHMH---QMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPRE 243

Query: 86  LEANTNRIVGT 96
                    GT
Sbjct: 244 ---KLKVNFGT 251

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 6/52 (11%)

Query: 31  IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD---EDLKSKISDFGLAR 79
           +H+ + I  G  YL+E      IH+D+ A N LL        +KI DFG+AR
Sbjct: 143 LHVARDIACGCQYLEENH---FIHRDIAARNCLLTCPGPGRVAKIGDFGMAR 191

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 46.8 bits (112), Expect = 3e-07
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 9/68 (13%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILL---DEDLKSKISDFGLARIFVKDDLEA 88
           H IQ I + + Y        ++H++LK  N+LL    +    K++DFGLA     D    
Sbjct: 109 HCIQQILESIAYCHSNG---IVHRNLKPENLLLASKAKGAAVKLADFGLAIEV-NDSEAW 164

Query: 89  NTNRIVGT 96
           +     GT
Sbjct: 165 HG--FAGT 170

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 9/68 (13%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILL---DEDLKSKISDFGLARIFVKDDLEA 88
             ++ I + + YL E     ++H+DLK  N+L      D   KI+DFGL++I     L  
Sbjct: 152 DAVKQILEAVAYLHENG---IVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVL-- 206

Query: 89  NTNRIVGT 96
               + GT
Sbjct: 207 -MKTVCGT 213

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 46.8 bits (112), Expect = 3e-07
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 6/53 (11%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILL---DEDLKSKISDFGLARIF 81
            +IQ +   + YL    +  ++H+DLK  N+L    +E+ K  I+DFGL+++ 
Sbjct: 110 LVIQQVLSAVKYL---HENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKME 159

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I   L YL  +S+  V+++DLK  N++LD+D   KI+DFGL +  +KD     T    GT
Sbjct: 257 IVSALDYL--HSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKT--FCGT 312

Query: 97  QE 98
            E
Sbjct: 313 PE 314

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 47.1 bits (112), Expect = 4e-07
 Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 17/98 (17%)

Query: 10  YLYLIFD-------VDPI--RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKAS 60
            + +I++        + +      +     +  ++ + +GL ++ E +    +H DLK  
Sbjct: 228 EMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENN---YVHLDLKPE 284

Query: 61  NILL--DEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           NI+       + K+ DFGL           +     GT
Sbjct: 285 NIMFTTKRSNELKLIDFGLTAHLDPKQ---SVKVTTGT 319

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL---DEDLKSKISDFGLARIFVKD 84
                +++ +   L Y        V+H+DLK  NIL          KI DFGLA +F  D
Sbjct: 124 GYVAELMKQMMNALAYFHS---QHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSD 180

Query: 85  DLEANTNRIVGT 96
           +    +    GT
Sbjct: 181 EH---STNAAGT 189

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 46.4 bits (111), Expect = 4e-07
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 9/68 (13%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILL---DEDLKSKISDFGLARIFVKDDLEA 88
            I++ +   + Y  +   L V H+DLK  N L      D   K+ DFGLA  F    +  
Sbjct: 110 RIMKDVLSAVAYCHK---LNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKM-- 164

Query: 89  NTNRIVGT 96
                VGT
Sbjct: 165 -MRTKVGT 171

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 46.2 bits (110), Expect = 5e-07
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 10/68 (14%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILL---DEDLKSKISDFGLARIFVKDDLEA 88
            I++ I   + +L  ++   + H+D+K  N+L    ++D   K++DFG A+   ++ L  
Sbjct: 132 EIMRDIGTAIQFLHSHN---IAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNAL-- 186

Query: 89  NTNRIVGT 96
                  T
Sbjct: 187 --QTPCYT 192

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 46.2 bits (110), Expect = 6e-07
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
              + ++ GI +GL  +         H+DLK +NILL ++ +  + D G    
Sbjct: 134 DQILWLLLGICRGLEAIH---AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQ 183

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 46.3 bits (110), Expect = 6e-07
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILL---DEDLKSKISDFGLARIFVKDD 85
            I++ I + + YL   +   + H+D+K  N+L      +   K++DFG A+     +
Sbjct: 165 EIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHN 218

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 45.6 bits (109), Expect = 8e-07
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 10/73 (13%)

Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL----DEDLKSKISDFGLARIFVK 83
                 ++ I  G+ YL       + H DLK  NI+L      + + K+ DFG+A     
Sbjct: 108 DEATQFLKQILDGVHYLHSKR---IAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEA 164

Query: 84  DDLEANTNRIVGT 96
            +       I GT
Sbjct: 165 GN---EFKNIFGT 174

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 45.9 bits (109), Expect = 8e-07
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGTQE 98
            +H+D+K  NIL+D +   +++DFG     ++D     ++  VGT +
Sbjct: 196 YVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDG-TVQSSVAVGTPD 241

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 10/73 (13%)

Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL----DEDLKSKISDFGLARIFVK 83
           +     I+ I  G+ YL       + H DLK  NI+L          K+ DFGLA     
Sbjct: 115 EEATSFIKQILDGVNYLHTKK---IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIED 171

Query: 84  DDLEANTNRIVGT 96
                    I GT
Sbjct: 172 GVE---FKNIFGT 181

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 10/73 (13%)

Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL----DEDLKSKISDFGLARIFVK 83
           +     I+ I  G+ YL       + H DLK  NI+L          K+ DFGLA     
Sbjct: 115 EEATSFIKQILDGVNYLHTKK---IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIED 171

Query: 84  DDLEANTNRIVGT 96
                    I GT
Sbjct: 172 GVE---FKNIFGT 181

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 9/68 (13%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILL---DEDLKSKISDFGLARIFVKDDLEA 88
            II+ +  G+ Y+ +     ++H+DLK  N+LL    +D   +I DFGL+  F       
Sbjct: 130 RIIRQVLSGITYMHKNK---IVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASK--- 183

Query: 89  NTNRIVGT 96
                +GT
Sbjct: 184 KMKDKIGT 191

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I   L YL       V+++D+K  N++LD+D   KI+DFGL +  + D     T    GT
Sbjct: 114 IVSALEYLHSRD---VVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKT--FCGT 168

Query: 97  QE 98
            E
Sbjct: 169 PE 170

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I+  L +L +     +I++DLK  NI+L+     K++DFGL +  + D    +T    GT
Sbjct: 130 ISMALGHLHQKG---IIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTHT--FCGT 184

Query: 97  QE 98
            E
Sbjct: 185 IE 186

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 9/68 (13%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILL---DEDLKSKISDFGLARIFVKDDLEA 88
            II+ +  G+ YL +++   ++H+DLK  N+LL   ++D   KI DFGL+ +F       
Sbjct: 140 VIIKQVLSGVTYLHKHN---IVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQK--- 193

Query: 89  NTNRIVGT 96
                +GT
Sbjct: 194 KMKERLGT 201

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 5/62 (8%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           +   L +L       +I++DLK  NILLDE+   K++DFGL++  +  + +A +    GT
Sbjct: 135 LALALDHLHSLG---IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYS--FCGT 189

Query: 97  QE 98
            E
Sbjct: 190 VE 191

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I   +  +        +H+D+K  NILLD     +++DFG       D     +   VGT
Sbjct: 171 IVMAIDSVHRLG---YVHRDIKPDNILLDRCGHIRLADFGSCLKLRADG-TVRSLVAVGT 226

Query: 97  QE 98
            +
Sbjct: 227 PD 228

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILL---DEDLKSKISDFGLARIF 81
            ++Q +   L +L       + H+DLK  NIL    ++    KI DF L    
Sbjct: 115 VVVQDVASALDFLHNKG---IAHRDLKPENILCEHPNQVSPVKICDFDLGSGI 164

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I   L++L +     +I++DLK  N+LLD +   K++DFG+ +  + + +   T    GT
Sbjct: 133 IISALMFLHDKG---IIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGVTTAT--FCGT 187

Query: 97  QE 98
            +
Sbjct: 188 PD 189

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 9/68 (13%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILL---DEDLKSKISDFGLARIFVKDDLEA 88
            II+ +  G+ Y+ +++   ++H+DLK  NILL   ++D   KI DFGL+  F ++    
Sbjct: 125 RIIKQVFSGITYMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNT--- 178

Query: 89  NTNRIVGT 96
                +GT
Sbjct: 179 KMKDRIGT 186

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 9/68 (13%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILL---DEDLKSKISDFGLARIFVKDDLEA 88
           +I++ I  G+ YL +++   ++H+D+K  NILL   +  L  KI DFGL+  F KD    
Sbjct: 150 NIMKQILSGICYLHKHN---IVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDY--- 203

Query: 89  NTNRIVGT 96
                +GT
Sbjct: 204 KLRDRLGT 211

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 52  VIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGTQE 98
            IH+D+K  N+LLD+    K++DFG     +  +     +  VGT +
Sbjct: 189 FIHRDVKPDNMLLDKSGHLKLADFGTCM-KMNKEGMVRCDTAVGTPD 234

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 10/73 (13%)

Query: 28  KTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL----DEDLKSKISDFGLARIFVK 83
           +     ++ I  G+ YL       + H DLK  NI+L        + KI DFGLA     
Sbjct: 114 EEATEFLKQILNGVYYLHSLQ---IAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF 170

Query: 84  DDLEANTNRIVGT 96
            +       I GT
Sbjct: 171 GNE---FKNIFGT 180

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 44.6 bits (105), Expect = 3e-06
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           I  GL +LQ      +I++DLK  N++LD +   KI+DFG+ +  + D +   T
Sbjct: 451 IAIGLFFLQSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKT 501

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 52  VIHQDLKASNILLDED-LKSKISDFGLARIF 81
           V+H+D+K  NIL+D +  + K+ DFG   + 
Sbjct: 170 VLHRDIKDENILIDLNRGELKLIDFGSGALL 200

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 44.1 bits (103), Expect = 3e-06
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 7/79 (8%)

Query: 8   QLYLYLIF-----DVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNI 62
           QL++ L F     D++ +R  +    T   I+  +T  L   +    L   H+DL   N+
Sbjct: 136 QLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEA--SLRFEHRDLHWGNV 193

Query: 63  LLDEDLKSKISDFGLARIF 81
           LL +    K+      +  
Sbjct: 194 LLKKTSLKKLHYTLNGKSS 212

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 52  VIHQDLKASNILLD-EDLKSKISDFGLARIF 81
           V+H+D+K  NIL+D     +K+ DFG   + 
Sbjct: 160 VVHRDIKDENILIDLRRGCAKLIDFGSGALL 190

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 43.8 bits (104), Expect = 5e-06
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I   L +L +     +I++D+K  NILLD +    ++DFGL++ FV D+         GT
Sbjct: 168 IVLALEHLHKLG---IIYRDIKLENILLDSNGHVVLTDFGLSKEFVADE-TERAYDFCGT 223

Query: 97  QE 98
            E
Sbjct: 224 IE 225

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 43.8 bits (104), Expect = 5e-06
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I   L YL   +   ++++DLK  NILLD      ++DFGL +  ++ +   +T    GT
Sbjct: 148 IASALGYLHSLN---IVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNSTTST--FCGT 202

Query: 97  QE 98
            E
Sbjct: 203 PE 204

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 43.4 bits (103), Expect = 5e-06
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           I+  L YL E     +I++DLK  N+LLD +   K++D+G+ +  ++     +T
Sbjct: 119 ISLALNYLHERG---IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTST 169

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           I  GL +L       ++++DLK  NILLD+D   KI+DFG+ +  +  D + NT
Sbjct: 127 IILGLQFLHSKG---IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNT 177

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           I+  L YL E     +I++DLK  N+LLD +   K++D+G+ +  ++     +T
Sbjct: 162 ISLALNYLHERG---IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTST 212

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 43.0 bits (102), Expect = 8e-06
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANT 90
           I  GL +LQ      +I++DLK  N++LD +   KI+DFG+ +  + D +   T
Sbjct: 130 IAIGLFFLQSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKT 180

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 9/35 (25%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 52  VIHQDLKASNILLDEDLKS-KISDFGLARIFVKDD 85
           ++H+D+K  N+++D + +  ++ D+GLA  +    
Sbjct: 151 IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQ 185

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILL---DEDLKSKISDFGLA 78
            I++ I + + YL   +   + H+D+K  N+L      +   K++DFG A
Sbjct: 121 EIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFA 167

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 8/62 (12%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           I     YL       +I++DLK  N+L+D+    +++DFG A+      ++  T  + GT
Sbjct: 150 IVLTFEYLHSLD---LIYRDLKPENLLIDQQGYIQVTDFGFAK-----RVKGRTWTLCGT 201

Query: 97  QE 98
            E
Sbjct: 202 PE 203

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 39.8 bits (94), Expect = 8e-05
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 8/62 (12%)

Query: 37  ITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           +   L YL       +I++DLK  NILLD++   KI+DFG A+      +   T  + GT
Sbjct: 115 VCLALEYLHSKD---IIYRDLKPENILLDKNGHIKITDFGFAKY-----VPDVTYTLCGT 166

Query: 97  QE 98
            +
Sbjct: 167 PD 168

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 8/53 (15%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKS------KISDFGLA 78
            I + +  GL Y+  + +  +IH D+K  N+L++           KI+D G A
Sbjct: 135 QISKQLLLGLDYM--HRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNA 185

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 37.8 bits (88), Expect = 6e-04
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 31  IHIIQGITQGLLY-LQEYSKLIVIHQDLKASNILLDEDLKS--KISDFGLA 78
           + +++     +L  L    K  +IH DLK  NILL +  +S  K+ DFG +
Sbjct: 199 LPLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSS 249

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.84
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.83
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.83
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.82
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.81
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.8
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.79
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.78
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.76
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.76
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.76
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.75
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.75
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.72
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.71
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.69
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.68
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.65
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.63
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.62
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.57
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.57
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.56
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.56
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.54
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.54
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.54
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.53
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.52
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.52
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.52
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.52
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.52
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.52
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.51
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.51
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.5
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.5
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.5
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.5
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.5
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.5
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.5
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.5
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.5
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.49
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.49
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.49
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.49
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.49
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.49
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.49
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.49
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.48
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.48
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.48
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.48
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.48
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.47
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.47
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.47
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.47
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.47
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.47
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.47
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.47
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.47
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.47
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.46
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.46
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.46
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.46
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.45
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.45
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.45
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.45
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.45
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.45
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.45
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.45
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.45
3niz_A	311	Rhodanese family protein; structural genomics, str	99.45
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.44
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.44
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.44
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.44
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.44
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.44
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.44
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.44
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.44
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.44
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.44
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.43
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.43
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.43
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.43
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.43
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.43
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.43
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.43
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.43
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.43
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.43
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.43
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.43
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.42
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.42
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.42
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.42
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.42
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.42
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.42
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.42
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.42
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.42
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.41
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.41
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.41
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.41
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.41
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.41
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.41
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.41
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.41
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.41
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.41
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.41
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.4
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.4
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.4
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.4
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.4
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.4
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.4
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.39
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.39
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.39
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.39
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.39
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.39
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.39
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.39
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.39
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.39
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.39
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.38
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.38
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.38
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.38
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.38
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.38
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.38
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.38
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.38
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.38
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.38
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.38
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.38
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.38
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.38
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.38
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.37
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.37
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.37
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.37
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.37
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.37
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.37
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.37
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.37
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.36
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.36
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.36
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.36
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.36
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.36
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.35
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.35
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.35
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.35
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.35
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.35
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.35
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.35
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.35
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.34
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.34
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.34
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.34
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.34
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.34
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.34
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.34
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.34
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.34
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.34
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.33
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.33
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.33
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.33
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.32
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.32
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.32
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.32
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.32
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.32
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.31
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.31
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.31
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.31
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.31
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.3
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.3
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.3
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.3
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.3
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.3
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.3
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.3
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.29
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.29
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.29
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.29
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.29
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.28
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.28
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.28
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.28
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.28
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.27
3bhy_A	283	Death-associated protein kinase 3; death associate	99.27
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.27
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.27
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.26
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.26
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.26
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.26
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.25
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.25
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.25
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.23
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.23
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.22
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.22
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.21
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.18
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.17
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.14
3uqc_A	286	Probable conserved transmembrane protein; structur	99.13
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.11
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.08
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	98.9
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	98.84
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	98.27
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	97.29
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	97.22
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	97.02
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	96.28
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	95.59
3ats_A	357	Putative uncharacterized protein; hypothetical pro	93.53
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	93.19
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	90.71
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	83.66
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	81.74
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	81.28

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.84  E-value=1.2e-21  Score=138.47  Aligned_cols=130  Identities=22%  Similarity=0.265  Sum_probs=94.1

Q ss_pred             hhheeeeeCCCcc------------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC
Q 043694           10 YLYLIFDVDPIRR------------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD   65 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~   65 (142)
                      ..|+|+||+++++                        ..++|.++..++.|++.|+.|||+.+   ++|||+++.||+++
T Consensus       103 ~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~  179 (308)
T 4gt4_A          103 PLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVY  179 (308)
T ss_dssp             SCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEC
T ss_pred             EEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC---CCCCCccccceEEC
Confidence            4789999988753                        24899999999999999999999998   99999999999999


Q ss_pred             CCCceEEecccceeeeecCcccccccccccchh--------------hhhhhhcCC--------------------ccee
Q 043694           66 EDLKSKISDFGLARIFVKDDLEANTNRIVGTQE--------------SYNLWKDGK--------------------GRKL  111 (142)
Q Consensus        66 ~~~~~~l~~fg~~~~~~~~~~~~~~~~~~g~~~--------------~~~~~~~~~--------------------~~~~  111 (142)
                      .++.+|++|||+++.+.........+..+|++.              ..++|+-|-                    +.+.
T Consensus       180 ~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~  259 (308)
T 4gt4_A          180 DKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEM  259 (308)
T ss_dssp             GGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHH
T ss_pred             CCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence            999999999999987654433222333445543              233333221                    1111


Q ss_pred             ecCCCCCCCCHHHHHHHHHHHHhccCccCCC
Q 043694          112 MDPSLDDTHSSWKLLTCLQIALLCVQENSND  142 (142)
Q Consensus       112 ~d~~~~~~~~~~~~~~~~~i~~~C~~~~p~~  142 (142)
                      +..+.....+.+....+.+++.+||+.||++
T Consensus       260 i~~~~~~~~p~~~~~~~~~li~~C~~~dP~~  290 (308)
T 4gt4_A          260 IRNRQVLPCPDDCPAWVYALMIECWNEFPSR  290 (308)
T ss_dssp             HHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             HHcCCCCCCcccchHHHHHHHHHHcCCChhH
Confidence            1122223345556678899999999999964

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.83  E-value=5.7e-21  Score=134.89  Aligned_cols=71  Identities=32%  Similarity=0.454  Sum_probs=63.1

Q ss_pred             hhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+|+|+||+++++         ..++|.++..++.|++.|+.|||+.+   ++|||+++.||+++.++.+|++|||+++.
T Consensus       105 ~~~iVmEy~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~  181 (307)
T 3omv_A          105 NLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATV  181 (307)
T ss_dssp             SCEEEEECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC
T ss_pred             eEEEEEEcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCccCHHHEEECCCCcEEEeeccCcee
Confidence            4789999998753         45999999999999999999999998   99999999999999999999999999987


Q ss_pred             eec
Q 043694           81 FVK   83 (142)
Q Consensus        81 ~~~   83 (142)
                      ...
T Consensus       182 ~~~  184 (307)
T 3omv_A          182 KSR  184 (307)
T ss_dssp             ---
T ss_pred             ccc
Confidence            653

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.83  E-value=1.9e-21  Score=138.63  Aligned_cols=130  Identities=19%  Similarity=0.260  Sum_probs=85.4

Q ss_pred             hhheeeeeCCCcc-----------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC
Q 043694           10 YLYLIFDVDPIRR-----------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE   66 (142)
Q Consensus        10 ~~~lv~e~~~~~~-----------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~   66 (142)
                      ..|+|+||+++++                       .+++|.++..++.|++.|+.|||+.+   ++|||+++.||+++.
T Consensus       117 ~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~  193 (329)
T 4aoj_A          117 PLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQ  193 (329)
T ss_dssp             SEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEET
T ss_pred             EEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCC---eecccccHhhEEECC
Confidence            4799999998754                       35999999999999999999999998   999999999999999


Q ss_pred             CCceEEecccceeeeecCcccccccccccchh--------------hhhhhhcCCcc--------------------eee
Q 043694           67 DLKSKISDFGLARIFVKDDLEANTNRIVGTQE--------------SYNLWKDGKGR--------------------KLM  112 (142)
Q Consensus        67 ~~~~~l~~fg~~~~~~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~--------------------~~~  112 (142)
                      ++.+|++|||+++.+.........+..+|++.              ..++|+-|-+.                    ..+
T Consensus       194 ~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i  273 (329)
T 4aoj_A          194 GLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCI  273 (329)
T ss_dssp             TTEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHH
T ss_pred             CCcEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHHHHHHH
Confidence            99999999999987654433222233445443              23333322111                    111


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHhccCccCCC
Q 043694          113 DPSLDDTHSSWKLLTCLQIALLCVQENSND  142 (142)
Q Consensus       113 d~~~~~~~~~~~~~~~~~i~~~C~~~~p~~  142 (142)
                      ........+......+.+++.+||+.||++
T Consensus       274 ~~g~~~~~p~~~~~~~~~li~~cl~~dP~~  303 (329)
T 4aoj_A          274 TQGRELERPRACPPEVYAIMRGCWQREPQQ  303 (329)
T ss_dssp             HHTCCCCCCTTCCHHHHHHHHHHCCSSTTT
T ss_pred             HcCCCCCCcccccHHHHHHHHHHcCcChhH
Confidence            111122344455668889999999999974

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.82  E-value=1.3e-21  Score=137.85  Aligned_cols=130  Identities=22%  Similarity=0.299  Sum_probs=92.8

Q ss_pred             hhheeeeeCCCcc---------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC
Q 043694           10 YLYLIFDVDPIRR---------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL   68 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~   68 (142)
                      ..|+|+||+++++                     ..|+|.++..++.|++.|+.|||+.+   ++|||+++.||+++.++
T Consensus        89 ~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~  165 (299)
T 4asz_A           89 PLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENL  165 (299)
T ss_dssp             SEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGG
T ss_pred             EEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCccCHhhEEECCCC
Confidence            5799999998753                     35999999999999999999999998   99999999999999999


Q ss_pred             ceEEecccceeeeecCcccccccccccchh--------------hhhhhhcCCcc-ee-------------------ecC
Q 043694           69 KSKISDFGLARIFVKDDLEANTNRIVGTQE--------------SYNLWKDGKGR-KL-------------------MDP  114 (142)
Q Consensus        69 ~~~l~~fg~~~~~~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~-~~-------------------~d~  114 (142)
                      .+|++|||+++...............|++.              ..++|+-|-+. ++                   +..
T Consensus       166 ~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~  245 (299)
T 4asz_A          166 LVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQ  245 (299)
T ss_dssp             CEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHH
T ss_pred             cEEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHc
Confidence            999999999986554332222223344433              33444333111 11                   111


Q ss_pred             CCCCCCCHHHHHHHHHHHHhccCccCCC
Q 043694          115 SLDDTHSSWKLLTCLQIALLCVQENSND  142 (142)
Q Consensus       115 ~~~~~~~~~~~~~~~~i~~~C~~~~p~~  142 (142)
                      ......+......+.+++.+||+.||++
T Consensus       246 ~~~~~~p~~~~~~~~~li~~cl~~dP~~  273 (299)
T 4asz_A          246 GRVLQRPRTCPQEVYELMLGCWQREPHM  273 (299)
T ss_dssp             TCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             CCCCCCCccchHHHHHHHHHHcCCChhH
Confidence            1112344455668889999999999964

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.81  E-value=5.2e-21  Score=137.47  Aligned_cols=130  Identities=24%  Similarity=0.275  Sum_probs=92.9

Q ss_pred             hhheeeeeCCCcc------------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC
Q 043694           10 YLYLIFDVDPIRR------------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD   65 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~   65 (142)
                      .+|+|+||+++++                        ..+++.++..++.|++.|+.|||+.+   ++|||+++.||+++
T Consensus       143 ~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRDLK~~NILl~  219 (353)
T 4ase_A          143 PLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAARNILLS  219 (353)
T ss_dssp             CCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEC
T ss_pred             EEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCC---eecCccCccceeeC
Confidence            4789999998743                        23899999999999999999999999   99999999999999


Q ss_pred             CCCceEEecccceeeeecCcccccccccccchh--------------hhhhhhcCCcc---------------------e
Q 043694           66 EDLKSKISDFGLARIFVKDDLEANTNRIVGTQE--------------SYNLWKDGKGR---------------------K  110 (142)
Q Consensus        66 ~~~~~~l~~fg~~~~~~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~---------------------~  110 (142)
                      .++.+|++|||+++.+.........+..+|++.              ..++|+-|-+.                     .
T Consensus       220 ~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~~~~  299 (353)
T 4ase_A          220 EKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCR  299 (353)
T ss_dssp             GGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHH
T ss_pred             CCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence            999999999999987654433222333445543              33444332110                     1


Q ss_pred             eecCCCCCCCCHHHHHHHHHHHHhccCccCCC
Q 043694          111 LMDPSLDDTHSSWKLLTCLQIALLCVQENSND  142 (142)
Q Consensus       111 ~~d~~~~~~~~~~~~~~~~~i~~~C~~~~p~~  142 (142)
                      .+........+......+.+++..||+.||++
T Consensus       300 ~i~~g~~~~~p~~~~~~~~~li~~c~~~dP~~  331 (353)
T 4ase_A          300 RLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQ  331 (353)
T ss_dssp             HHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             HHHcCCCCCCCccCCHHHHHHHHHHcCcChhH
Confidence            11112223344445567889999999999964

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.80  E-value=3.2e-19  Score=125.86  Aligned_cols=75  Identities=27%  Similarity=0.339  Sum_probs=65.7

Q ss_pred             hhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhccC-----CCceEecccCCCcEEeCCCCceEEecccc
Q 043694           10 YLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEYS-----KLIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~-----~~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      .+|+|+||+++++       ..++|+.+..++.|++.|+.|+|+..     .++++|||+++.||+++.++.+|++|||+
T Consensus        75 ~~~lV~Ey~~~gsL~~~l~~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGl  154 (303)
T 3hmm_A           75 QLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL  154 (303)
T ss_dssp             EEEEEEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTT
T ss_pred             EEEEEecCCCCCcHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCC
Confidence            3689999999754       56999999999999999999999861     33499999999999999999999999999


Q ss_pred             eeeeecC
Q 043694           78 ARIFVKD   84 (142)
Q Consensus        78 ~~~~~~~   84 (142)
                      ++.....
T Consensus       155 a~~~~~~  161 (303)
T 3hmm_A          155 AVRHDSA  161 (303)
T ss_dssp             CEEEETT
T ss_pred             CccccCC
Confidence            9877644

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.79  E-value=3.5e-19  Score=125.79  Aligned_cols=131  Identities=24%  Similarity=0.314  Sum_probs=96.5

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .++|+||||+++++        ..+++..+..++.|++.|+.|||+.+   ++|||+++.||+++.++.+|++|||+++.
T Consensus       105 ~~~yivmEy~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDlKPeNILl~~~g~vKl~DFGla~~  181 (311)
T 4aw0_A          105 EKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKV  181 (311)
T ss_dssp             SEEEEEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             CEEEEEEecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCCHHHeEEcCCCCEEEEEcCCcee
Confidence            35899999998753        56999999999999999999999999   99999999999999999999999999998


Q ss_pred             eecCcccccccccccchh--------------hhhhhhcCCcceeecCC---C---------------CCCCCHHHHHHH
Q 043694           81 FVKDDLEANTNRIVGTQE--------------SYNLWKDGKGRKLMDPS---L---------------DDTHSSWKLLTC  128 (142)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~~~~d~~---~---------------~~~~~~~~~~~~  128 (142)
                      +............+||+.              ..+.|+.|-+...+-.+   .               ...++......+
T Consensus       182 ~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~  261 (311)
T 4aw0_A          182 LSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLEYDFPEKFFPKA  261 (311)
T ss_dssp             CCTTTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTCCHHH
T ss_pred             cCCCCCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCcccCHHH
Confidence            765443333455678766              55667655322111100   0               011222223466


Q ss_pred             HHHHHhccCccCCC
Q 043694          129 LQIALLCVQENSND  142 (142)
Q Consensus       129 ~~i~~~C~~~~p~~  142 (142)
                      .++..+|++.||++
T Consensus       262 ~dli~~lL~~dp~~  275 (311)
T 4aw0_A          262 RDLVEKLLVLDATK  275 (311)
T ss_dssp             HHHHHHHSCSSGGG
T ss_pred             HHHHHHHccCCHhH
Confidence            77889999999963

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.78  E-value=5.1e-19  Score=126.65  Aligned_cols=129  Identities=21%  Similarity=0.226  Sum_probs=94.3

Q ss_pred             hhhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694            9 LYLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus         9 ~~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .++|+||||++++.       ..+++..+..++.|++.|+.|||+.+   ++|||+++.||+++.++.+|++|||+++.+
T Consensus       144 ~~~~ivmEy~~gg~L~~~l~~~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~  220 (346)
T 4fih_A          144 DELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQV  220 (346)
T ss_dssp             TEEEEEECCCTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             CEEEEEEeCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCCHHHEEECCCCCEEEecCcCceec
Confidence            35899999998753       56999999999999999999999999   999999999999999999999999999877


Q ss_pred             ecCcccccccccccchh--------------hhhhhhcCCcceee-c------------------CCCC--CCCCHHHHH
Q 043694           82 VKDDLEANTNRIVGTQE--------------SYNLWKDGKGRKLM-D------------------PSLD--DTHSSWKLL  126 (142)
Q Consensus        82 ~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~~~~-d------------------~~~~--~~~~~~~~~  126 (142)
                      ......  ....+||+.              ..+.|+.|-+...+ .                  ....  .........
T Consensus       221 ~~~~~~--~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~  298 (346)
T 4fih_A          221 SKEVPR--RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSP  298 (346)
T ss_dssp             CSSSCC--BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCSCGGGSCH
T ss_pred             CCCCCc--ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCCccccCCH
Confidence            544321  234567765              55666655211111 0                  0010  111122335


Q ss_pred             HHHHHHHhccCccCCC
Q 043694          127 TCLQIALLCVQENSND  142 (142)
Q Consensus       127 ~~~~i~~~C~~~~p~~  142 (142)
                      .+.++..+|++.||++
T Consensus       299 ~~~dli~~~L~~dP~~  314 (346)
T 4fih_A          299 SLKGFLDRLLVRDPAQ  314 (346)
T ss_dssp             HHHHHHHHHSCSSTTT
T ss_pred             HHHHHHHHHcCCChhH
Confidence            6778889999999974

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.76  E-value=2.7e-18  Score=125.70  Aligned_cols=127  Identities=20%  Similarity=0.239  Sum_probs=93.7

Q ss_pred             hhhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694            9 LYLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus         9 ~~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .++|+||||++++.       ..+++.++..++.|++.|+.|||+.+   ++|||+++.||+++.++.+|++|||+++.+
T Consensus       221 ~~~~iVmEy~~gG~L~~~i~~~~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~  297 (423)
T 4fie_A          221 DELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQV  297 (423)
T ss_dssp             TEEEEEEECCTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEEC
T ss_pred             CEEEEEEeCCCCCcHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCC---eecccCCHHHEEEcCCCCEEEecCccceEC
Confidence            35899999998753       55999999999999999999999999   999999999999999999999999999877


Q ss_pred             ecCcccccccccccchh--------------hhhhhhcCCccee-e----------------------cCCCCCCCCHHH
Q 043694           82 VKDDLEANTNRIVGTQE--------------SYNLWKDGKGRKL-M----------------------DPSLDDTHSSWK  124 (142)
Q Consensus        82 ~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~~~-~----------------------d~~~~~~~~~~~  124 (142)
                      ......  ....+||+.              ..+.|+.|-+... +                      .+.+  ......
T Consensus       298 ~~~~~~--~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~--~~~~~~  373 (423)
T 4fie_A          298 SKEVPR--RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRL--KNLHKV  373 (423)
T ss_dssp             CSSCCC--BCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCC--SCTTSS
T ss_pred             CCCCcc--ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCC--cccccC
Confidence            544322  234667765              4566665521111 1                      0111  111122


Q ss_pred             HHHHHHHHHhccCccCCC
Q 043694          125 LLTCLQIALLCVQENSND  142 (142)
Q Consensus       125 ~~~~~~i~~~C~~~~p~~  142 (142)
                      ...+.++..+|++.||++
T Consensus       374 s~~~~dli~~~L~~dP~~  391 (423)
T 4fie_A          374 SPSLKGFLDRLLVRDPAQ  391 (423)
T ss_dssp             CHHHHHHHHHHSCSSTTT
T ss_pred             CHHHHHHHHHHcCCChhH
Confidence            346777889999999974

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.76  E-value=6.3e-19  Score=125.76  Aligned_cols=131  Identities=19%  Similarity=0.222  Sum_probs=90.5

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC-ceEEeccccee
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL-KSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~-~~~l~~fg~~~   79 (142)
                      .++|+||||+++++        ..|++..+..++.|++.|+.|||+.+   ++|||+++.||+++.++ .+|++|||+++
T Consensus       123 ~~~~ivmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~~vKl~DFGla~  199 (336)
T 4g3f_A          123 PWVNIFMELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHAL  199 (336)
T ss_dssp             TEEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEECTTSCCEEECCCTTCE
T ss_pred             CEEEEEEeccCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---ceecccCHHHEEEeCCCCEEEEeeCCCCe
Confidence            35899999998754        56999999999999999999999999   99999999999999876 69999999998


Q ss_pred             eeecCcccc---cccccccchh--------------hhhhhhcCCcceee--------------------cCCCC-CCCC
Q 043694           80 IFVKDDLEA---NTNRIVGTQE--------------SYNLWKDGKGRKLM--------------------DPSLD-DTHS  121 (142)
Q Consensus        80 ~~~~~~~~~---~~~~~~g~~~--------------~~~~~~~~~~~~~~--------------------d~~~~-~~~~  121 (142)
                      .+.......   .....+||+.              ..+.|+.|-+...+                    ..... .+.+
T Consensus       200 ~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~  279 (336)
T 4g3f_A          200 CLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPPIREIP  279 (336)
T ss_dssp             EC------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCCGGGGSC
T ss_pred             EccCCCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHcCCCCchhcC
Confidence            775432111   1233567655              45556544211100                    00000 1223


Q ss_pred             HHHHHHHHHHHHhccCccCCC
Q 043694          122 SWKLLTCLQIALLCVQENSND  142 (142)
Q Consensus       122 ~~~~~~~~~i~~~C~~~~p~~  142 (142)
                      .+....+.++..+|++.||++
T Consensus       280 ~~~s~~~~~li~~~L~~dP~~  300 (336)
T 4g3f_A          280 PSCAPLTAQAIQEGLRKEPVH  300 (336)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGG
T ss_pred             ccCCHHHHHHHHHHccCCHhH
Confidence            334457788889999999964

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.76  E-value=4.6e-19  Score=124.99  Aligned_cols=129  Identities=24%  Similarity=0.292  Sum_probs=91.4

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..+|+||||+++++        ..+++..+..++.|++.|+.|+|+.+   ++|||+++.||+++.++.+|++|||+++.
T Consensus        99 ~~~~ivmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~  175 (304)
T 3ubd_A           99 GKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLG---IIYRDLKPENILLDEEGHIKLTDFGLSKE  175 (304)
T ss_dssp             TEEEEEECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCCGGGEEECTTSCEEEESSEEEEC
T ss_pred             CEEEEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCCCHHHeEEcCCCCEEeccccccee
Confidence            35899999998754        56999999999999999999999999   99999999999999999999999999986


Q ss_pred             eecCcccccccccccchh--------------hhhhhhcCCcceee-cCCC-----------------CCCCCHHHHHHH
Q 043694           81 FVKDDLEANTNRIVGTQE--------------SYNLWKDGKGRKLM-DPSL-----------------DDTHSSWKLLTC  128 (142)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~~~~-d~~~-----------------~~~~~~~~~~~~  128 (142)
                      .......  ....+||+.              ..+.|+.|-+...+ .-..                 ...++......+
T Consensus       176 ~~~~~~~--~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~  253 (304)
T 3ubd_A          176 SIDHEKK--AYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQFLSPEA  253 (304)
T ss_dssp             -----CC--CCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHH
T ss_pred             ccCCCcc--ccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHHHHHHHHcCCCCCCCcCCHHH
Confidence            5443221  233566655              45666555211111 0000                 011222334567


Q ss_pred             HHHHHhccCccCCC
Q 043694          129 LQIALLCVQENSND  142 (142)
Q Consensus       129 ~~i~~~C~~~~p~~  142 (142)
                      .++..+|++.||++
T Consensus       254 ~~li~~~L~~dP~~  267 (304)
T 3ubd_A          254 QSLLRMLFKRNPAN  267 (304)
T ss_dssp             HHHHHHHTCSSGGG
T ss_pred             HHHHHHHcccCHHH
Confidence            78889999999964

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.75  E-value=3.8e-19  Score=127.45  Aligned_cols=127  Identities=20%  Similarity=0.275  Sum_probs=90.8

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      .+|+||||+++++          ..+++.++..++.|++.|+.|||+.+   ++|||+|+.||+++.++.+|++|||+++
T Consensus        97 ~~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~  173 (350)
T 4b9d_A           97 SLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIAR  173 (350)
T ss_dssp             EEEEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEES
T ss_pred             EEEEEEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCCHHHEEECCCCCEEEcccccce
Confidence            5899999998743          34789999999999999999999999   9999999999999999999999999998


Q ss_pred             eeecCcccccccccccchh--------------hhhhhhcCCcceee--------------------cCCCCCCCCHHHH
Q 043694           80 IFVKDDLEANTNRIVGTQE--------------SYNLWKDGKGRKLM--------------------DPSLDDTHSSWKL  125 (142)
Q Consensus        80 ~~~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~~~~--------------------d~~~~~~~~~~~~  125 (142)
                      .+......  ....+||+.              ..+.|+.|-+...+                    .... ...+....
T Consensus       174 ~~~~~~~~--~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~-~~~~~~~s  250 (350)
T 4b9d_A          174 VLNSTVEL--ARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSF-PPVSLHYS  250 (350)
T ss_dssp             CCCHHHHH--HHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCC-CCCCTTSC
T ss_pred             eecCCccc--ccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCC-CCCCccCC
Confidence            76543211  223455544              45666555211111                    1111 11122223


Q ss_pred             HHHHHHHHhccCccCCC
Q 043694          126 LTCLQIALLCVQENSND  142 (142)
Q Consensus       126 ~~~~~i~~~C~~~~p~~  142 (142)
                      ..+.++..+|++.||++
T Consensus       251 ~~~~~li~~~L~~dP~~  267 (350)
T 4b9d_A          251 YDLRSLVSQLFKRNPRD  267 (350)
T ss_dssp             HHHHHHHHHHTCSSGGG
T ss_pred             HHHHHHHHHHccCChhH
Confidence            46778889999999963

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.75  E-value=8.7e-19  Score=122.88  Aligned_cols=71  Identities=27%  Similarity=0.384  Sum_probs=62.3

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC-CCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE-DLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~-~~~~~l~~fg~~~~   80 (142)
                      ++|+||||+++++        ..+++..+..++.|++.|+.|||+.+ ++++|||+++.||+++. ++.+|++|||+++.
T Consensus       103 ~~~lvmEy~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~ylH~~~-~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~  181 (290)
T 3fpq_A          103 CIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATL  181 (290)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCCCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred             EEEEEEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC-CCEEecccChhheeEECCCCCEEEEeCcCCEe
Confidence            4799999998854        56999999999999999999999875 34899999999999974 78999999999975


Q ss_pred             e
Q 043694           81 F   81 (142)
Q Consensus        81 ~   81 (142)
                      .
T Consensus       182 ~  182 (290)
T 3fpq_A          182 K  182 (290)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.72  E-value=2.1e-18  Score=120.09  Aligned_cols=127  Identities=22%  Similarity=0.317  Sum_probs=83.6

Q ss_pred             hhheeeeeCCC-------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPI-------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~-------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .+|+||||+.+       ....+++..+..++.|++.|+.|+|+.+   ++|||+++.||+++.++.+|++|||+++...
T Consensus        87 ~~~ivmEy~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDiKP~NILl~~~~~vkl~DFGla~~~~  163 (275)
T 3hyh_A           87 EIIMVIEYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRHK---IVHRDLKPENLLLDEHLNVKIADFGLSNIMT  163 (275)
T ss_dssp             EEEEEEECCCEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCTTTEEECTTCCEEECCSSCC----
T ss_pred             EEEEEEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCChHHeEECCCCCEEEeecCCCeecC
Confidence            58999999854       2356999999999999999999999999   9999999999999999999999999998765


Q ss_pred             cCcccccccccccchh---------------hhhhhhcCCcceee-cCCC-----------------CCCCCHHHHHHHH
Q 043694           83 KDDLEANTNRIVGTQE---------------SYNLWKDGKGRKLM-DPSL-----------------DDTHSSWKLLTCL  129 (142)
Q Consensus        83 ~~~~~~~~~~~~g~~~---------------~~~~~~~~~~~~~~-d~~~-----------------~~~~~~~~~~~~~  129 (142)
                      ....   ....+||+.               ..+.|+.|-+...+ .-..                 ...++......+.
T Consensus       164 ~~~~---~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~  240 (275)
T 3hyh_A          164 DGNF---LKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKFLSPGAA  240 (275)
T ss_dssp             --------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTSCHHHH
T ss_pred             CCCc---cCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHH
Confidence            4322   122445543               45666655221111 0000                 0112222234677


Q ss_pred             HHHHhccCccCCC
Q 043694          130 QIALLCVQENSND  142 (142)
Q Consensus       130 ~i~~~C~~~~p~~  142 (142)
                      ++..+|++.||++
T Consensus       241 ~li~~~L~~dP~~  253 (275)
T 3hyh_A          241 GLIKRMLIVNPLN  253 (275)
T ss_dssp             HHHHHHSCSSGGG
T ss_pred             HHHHHHccCChhH
Confidence            8889999999964

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.71  E-value=5.7e-18  Score=119.26  Aligned_cols=72  Identities=29%  Similarity=0.524  Sum_probs=59.5

Q ss_pred             hhhheeeeeCCCcc-----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccc
Q 043694            9 LYLYLIFDVDPIRR-----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus         9 ~~~~lv~e~~~~~~-----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      .++|++|||+++++           ....+..+..++.|++.|+.|||+.+   ++|||+++.||+++.++.+|++|||+
T Consensus        88 ~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~---IiHRDlKp~NILl~~~~~vKl~DFGl  164 (299)
T 4g31_A           88 VYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFGL  164 (299)
T ss_dssp             EEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECCCCC
T ss_pred             cEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCc---CccccCcHHHeEECCCCcEEEccCcc
Confidence            35799999998743           23566778899999999999999999   99999999999999999999999999


Q ss_pred             eeeeec
Q 043694           78 ARIFVK   83 (142)
Q Consensus        78 ~~~~~~   83 (142)
                      ++.+..
T Consensus       165 a~~~~~  170 (299)
T 4g31_A          165 VTAMDQ  170 (299)
T ss_dssp             C-----
T ss_pred             ceecCC
Confidence            987654

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.69  E-value=9.6e-17  Score=123.00  Aligned_cols=126  Identities=25%  Similarity=0.172  Sum_probs=92.8

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ++|+||||++++.        ..|++..+..++.|++.|+.|||+.+   |+|||+++.||+++.++.+|++|||++..+
T Consensus       266 ~lylVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH~~g---IiHRDLKPeNILld~~G~vKL~DFGlA~~~  342 (689)
T 3v5w_A          266 KLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDF  342 (689)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCchHHeEEeCCCCEEecccceeeec
Confidence            5899999999864        56999999999999999999999999   999999999999999999999999999876


Q ss_pred             ecCcccccccccccchh---------------hhhhhhcCCcceeecCC---------------------CCCCCCHHHH
Q 043694           82 VKDDLEANTNRIVGTQE---------------SYNLWKDGKGRKLMDPS---------------------LDDTHSSWKL  125 (142)
Q Consensus        82 ~~~~~~~~~~~~~g~~~---------------~~~~~~~~~~~~~~d~~---------------------~~~~~~~~~~  125 (142)
                      ....    ....+||+.               ..+.|+.|-+...+-.+                     ....++....
T Consensus       343 ~~~~----~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~~~p~~~S  418 (689)
T 3v5w_A          343 SKKK----PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFS  418 (689)
T ss_dssp             SSCC----CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCCCCCTTSC
T ss_pred             CCCC----CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCCCCCCCccCC
Confidence            5433    233566655               45666555222111000                     0011222233


Q ss_pred             HHHHHHHHhccCccCCC
Q 043694          126 LTCLQIALLCVQENSND  142 (142)
Q Consensus       126 ~~~~~i~~~C~~~~p~~  142 (142)
                      ..+..+..+|++.||++
T Consensus       419 ~~a~dLI~~lL~~dP~~  435 (689)
T 3v5w_A          419 PELRSLLEGLLQRDVNR  435 (689)
T ss_dssp             HHHHHHHHHHTCSCGGG
T ss_pred             HHHHHHHHHHccCCHhH
Confidence            46778889999999863

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.68  E-value=1.2e-16  Score=116.46  Aligned_cols=71  Identities=32%  Similarity=0.532  Sum_probs=63.5

Q ss_pred             hhheeeeeCCC-------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPI-------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~-------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .+|+||||+++       ....+++..+..++.|++.|+.|||+.+   ++|||+++.||+++.++.+|++|||+++.+.
T Consensus       133 ~~~ivmE~~~g~L~~~i~~~~~l~~~~~~~~~~qil~al~ylH~~~---iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~  209 (398)
T 4b99_A          133 SVYVVLDLMESDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSAQ---VIHRDLKPSNLLVNENCELKIGDFGMARGLC  209 (398)
T ss_dssp             CEEEEEECCSEEHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTCCEEECCCTTCBCC-
T ss_pred             EEEEEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCc---CcCCCcCccccccCCCCCEEEeecceeeecc
Confidence            46999999875       2466999999999999999999999999   9999999999999999999999999998764


Q ss_pred             c
Q 043694           83 K   83 (142)
Q Consensus        83 ~   83 (142)
                      .
T Consensus       210 ~  210 (398)
T 4b99_A          210 T  210 (398)
T ss_dssp             -
T ss_pred             c
Confidence            3

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.65  E-value=3.2e-15  Score=105.57  Aligned_cols=130  Identities=28%  Similarity=0.482  Sum_probs=94.5

Q ss_pred             hhheeeeeCCCcc------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccc
Q 043694           10 YLYLIFDVDPIRR------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      ..|+|+||++++.            ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.+++.|||+
T Consensus       109 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~  185 (321)
T 2qkw_B          109 EMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRA---IIHRDVKSINILLDENFVPKITDFGI  185 (321)
T ss_dssp             CCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCSTTEEECTTCCEEECCCTT
T ss_pred             eEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCC---eecCCCCHHHEEECCCCCEEEeeccc
Confidence            5789999987532            24899999999999999999999998   99999999999999999999999999


Q ss_pred             eeeeecCcccccccccccchh--------------hhhhhh-----------------------------------cCCc
Q 043694           78 ARIFVKDDLEANTNRIVGTQE--------------SYNLWK-----------------------------------DGKG  108 (142)
Q Consensus        78 ~~~~~~~~~~~~~~~~~g~~~--------------~~~~~~-----------------------------------~~~~  108 (142)
                      +................|++.              ..+.|+                                   .+.+
T Consensus       186 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  265 (321)
T 2qkw_B          186 SKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQL  265 (321)
T ss_dssp             CEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCC
T ss_pred             ccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccH
Confidence            876443221111111112211              122222                                   1223


Q ss_pred             ceeecCCCCCCCCHHHHHHHHHHHHhccCccCCC
Q 043694          109 RKLMDPSLDDTHSSWKLLTCLQIALLCVQENSND  142 (142)
Q Consensus       109 ~~~~d~~~~~~~~~~~~~~~~~i~~~C~~~~p~~  142 (142)
                      ...+++.+....+......+.+++.+|++.||++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~  299 (321)
T 2qkw_B          266 EQIVDPNLADKIRPESLRKFGDTAVKCLALSSED  299 (321)
T ss_dssp             CSSSSSSCTTCSCHHHHHHHHHHHHHHTCSSGGG
T ss_pred             HHhcChhhccccCHHHHHHHHHHHHHHcCCCccc
Confidence            4445566656677888999999999999999964

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.63  E-value=8.7e-16  Score=110.67  Aligned_cols=71  Identities=20%  Similarity=0.293  Sum_probs=63.5

Q ss_pred             hhhheeeeeCCCcc-----cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC-CceEEecccceeeee
Q 043694            9 LYLYLIFDVDPIRR-----FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED-LKSKISDFGLARIFV   82 (142)
Q Consensus         9 ~~~~lv~e~~~~~~-----~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~-~~~~l~~fg~~~~~~   82 (142)
                      .++|+||||++++.     ..+++.++..++.|++.|+.|+|+.+   ++|||+||.||+++.+ +.+|++|||+++...
T Consensus        93 ~~~~lvmE~~~g~~L~~~~~~l~~~~~~~~~~qll~al~ylH~~g---IiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~  169 (361)
T 4f9c_A           93 DHVVIAMPYLEHESFLDILNSLSFQEVREYMLNLFKALKRIHQFG---IVHRDVKPSNFLYNRRLKKYALVDFGLAQGTH  169 (361)
T ss_dssp             TEEEEEEECCCCCCHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEETTTTEEEECCCTTCEECT
T ss_pred             CEEEEEEeCCCcccHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCcCCHHHeEEeCCCCeEEECcCCCCcccC
Confidence            46899999998754     45999999999999999999999999   9999999999999866 789999999998654

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.62  E-value=5.8e-15  Score=104.31  Aligned_cols=132  Identities=30%  Similarity=0.476  Sum_probs=96.3

Q ss_pred             hhheeeeeCCCcc------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccc
Q 043694           10 YLYLIFDVDPIRR------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      ..|+|+||+.++.            ..+++..+..++.+++.|+.|||+...+.++|+|+++.||+++.++.++++|||.
T Consensus       101 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~  180 (326)
T 3uim_A          101 ERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGL  180 (326)
T ss_dssp             CCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEECCCSS
T ss_pred             ceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEeccCcc
Confidence            4678999987632            3499999999999999999999999222399999999999999999999999999


Q ss_pred             eeeeecCcccccccccccchh--------------hhhhhh-------------------------------------cC
Q 043694           78 ARIFVKDDLEANTNRIVGTQE--------------SYNLWK-------------------------------------DG  106 (142)
Q Consensus        78 ~~~~~~~~~~~~~~~~~g~~~--------------~~~~~~-------------------------------------~~  106 (142)
                      +.......... .....|++.              ..+.|+                                     ..
T Consensus       181 ~~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  259 (326)
T 3uim_A          181 AKLMDYKDTHV-TTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEK  259 (326)
T ss_dssp             CEECCSSSSCE-ECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSC
T ss_pred             ccccCcccccc-cccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhch
Confidence            88764332211 111222222              122222                                     22


Q ss_pred             CcceeecCCCCCCCCHHHHHHHHHHHHhccCccCCC
Q 043694          107 KGRKLMDPSLDDTHSSWKLLTCLQIALLCVQENSND  142 (142)
Q Consensus       107 ~~~~~~d~~~~~~~~~~~~~~~~~i~~~C~~~~p~~  142 (142)
                      .....++..+.+..+......+.+++.+|++.||++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~  295 (326)
T 3uim_A          260 KLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPME  295 (326)
T ss_dssp             CSTTSSCTTCTTSCCHHHHHHHHHHHHHHTCSCGGG
T ss_pred             hhhhhcChhhccccCHHHHHHHHHHHHHHhCcCCcc
Confidence            334455566666788889999999999999999963

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.57  E-value=2.4e-15  Score=114.16  Aligned_cols=72  Identities=21%  Similarity=0.352  Sum_probs=63.7

Q ss_pred             hhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC--CceEEecccce
Q 043694           10 YLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED--LKSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~--~~~~l~~fg~~   78 (142)
                      ++|++|||++++.         ..|++..+..++.|++.|+.|||+.+   ++|||+++.||+++.+  +.+|++|||++
T Consensus       228 ~~~iv~E~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~~---iiHRDlKp~Nill~~~~~~~vKl~DFG~a  304 (573)
T 3uto_A          228 EMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENN---YVHLDLKPENIMFTTKRSNELKLIDFGLT  304 (573)
T ss_dssp             EEEEEEECCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSCCCEEECCCSSC
T ss_pred             EEEEEEeecCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCChhhccccCCCCCCEEEeeccce
Confidence            5899999998643         45899999999999999999999999   9999999999999754  78999999999


Q ss_pred             eeeecC
Q 043694           79 RIFVKD   84 (142)
Q Consensus        79 ~~~~~~   84 (142)
                      +.+...
T Consensus       305 ~~~~~~  310 (573)
T 3uto_A          305 AHLDPK  310 (573)
T ss_dssp             EECCTT
T ss_pred             eEccCC
Confidence            887544

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.57  E-value=1e-14  Score=103.21  Aligned_cols=71  Identities=35%  Similarity=0.637  Sum_probs=63.8

Q ss_pred             hheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhcc----------CCCceEecccCCCcEEeCCCCceEEe
Q 043694           11 LYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEY----------SKLIVIHQDLKASNILLDEDLKSKIS   73 (142)
Q Consensus        11 ~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~----------~~~~i~h~~l~~~nil~~~~~~~~l~   73 (142)
                      +|+|+||+++++       ..+++..+..++.|++.|+.|||+.          +   ++|+|+++.||+++.++.++++
T Consensus        97 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~---ivH~Dlkp~Nill~~~~~~kL~  173 (322)
T 3soc_A           97 LWLITAFHEKGSLSDFLKANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPA---ISHRDIKSKNVLLKNNLTACIA  173 (322)
T ss_dssp             EEEEEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECE---EECSCCSGGGEEECTTCCEEEC
T ss_pred             EEEEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCC---EEeCCCChHhEEECCCCeEEEc
Confidence            689999988743       4599999999999999999999998          7   9999999999999999999999


Q ss_pred             cccceeeeecC
Q 043694           74 DFGLARIFVKD   84 (142)
Q Consensus        74 ~fg~~~~~~~~   84 (142)
                      |||++......
T Consensus       174 DFg~a~~~~~~  184 (322)
T 3soc_A          174 DFGLALKFEAG  184 (322)
T ss_dssp             CCTTCEEECTT
T ss_pred             cCCcccccccc
Confidence            99999876543

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.56  E-value=3.9e-15  Score=107.57  Aligned_cols=70  Identities=31%  Similarity=0.455  Sum_probs=63.1

Q ss_pred             hhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||++++.         ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||+++.
T Consensus       186 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~Nil~~~~~~~kl~DfG~s~~  262 (377)
T 3cbl_A          186 PIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKC---CIHRDLAARNCLVTEKNVLKISDFGMSRE  262 (377)
T ss_dssp             SCEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCGGGCEE
T ss_pred             CcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---cCCcccCHHHEEEcCCCcEEECcCCCcee
Confidence            5789999987643         35899999999999999999999999   99999999999999999999999999876


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       263 ~~  264 (377)
T 3cbl_A          263 EA  264 (377)
T ss_dssp             CT
T ss_pred             cC
Confidence            43

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.56  E-value=7e-15  Score=106.05  Aligned_cols=71  Identities=32%  Similarity=0.489  Sum_probs=63.0

Q ss_pred             hhheeeeeCCCcc------------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC
Q 043694           10 YLYLIFDVDPIRR------------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD   65 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~   65 (142)
                      .+|+|+||++++.                        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++
T Consensus       161 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~  237 (370)
T 2psq_A          161 PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNVLVT  237 (370)
T ss_dssp             SCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEEC
T ss_pred             CEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---eeccccchhhEEEC
Confidence            5789999987632                        24799999999999999999999998   99999999999999


Q ss_pred             CCCceEEecccceeeeec
Q 043694           66 EDLKSKISDFGLARIFVK   83 (142)
Q Consensus        66 ~~~~~~l~~fg~~~~~~~   83 (142)
                      .++.++++|||++.....
T Consensus       238 ~~~~~kl~DFG~a~~~~~  255 (370)
T 2psq_A          238 ENNVMKIADFGLARDINN  255 (370)
T ss_dssp             TTCCEEECCCSSCEETTC
T ss_pred             CCCCEEEccccCCcccCc
Confidence            999999999999886543

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.54  E-value=9.1e-15  Score=106.53  Aligned_cols=69  Identities=26%  Similarity=0.347  Sum_probs=63.2

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+|+|+||++++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||+++..
T Consensus       127 ~~~lV~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~g---ivHrDLKp~NILl~~~g~ikL~DFGla~~~  203 (396)
T 4dc2_A          127 RLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERG---IIYRDLKLDNVLLDSEGHIKLTDYGMCKEG  203 (396)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred             EEEEEEEcCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---EEeccCCHHHEEECCCCCEEEeecceeeec
Confidence            4789999998753        46999999999999999999999998   999999999999999999999999998753

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.54  E-value=7.1e-14  Score=100.35  Aligned_cols=70  Identities=14%  Similarity=0.161  Sum_probs=62.8

Q ss_pred             hhheeeeeCCCc-------------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC----------
Q 043694           10 YLYLIFDVDPIR-------------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE----------   66 (142)
Q Consensus        10 ~~~lv~e~~~~~-------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~----------   66 (142)
                      ..|+|+||++++             ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.          
T Consensus       141 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~---ivHrDiKp~NIll~~~~~~~~~~~~  217 (365)
T 3e7e_A          141 GSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCE---IIHGDIKPDNFILGNGFLEQDDEDD  217 (365)
T ss_dssp             CEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCSGGGEEECGGGTCC-----
T ss_pred             CcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCC---eecCCCCHHHEEecccccCcccccc
Confidence            468999998763             346999999999999999999999998   999999999999988          


Q ss_pred             -CCceEEecccceeeee
Q 043694           67 -DLKSKISDFGLARIFV   82 (142)
Q Consensus        67 -~~~~~l~~fg~~~~~~   82 (142)
                       ++.++++|||++..+.
T Consensus       218 ~~~~~kl~DFG~a~~~~  234 (365)
T 3e7e_A          218 LSAGLALIDLGQSIDMK  234 (365)
T ss_dssp             -CTTEEECCCTTCEEGG
T ss_pred             ccCCEEEeeCchhhhhh
Confidence             7899999999997654

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.54  E-value=2.3e-14  Score=101.52  Aligned_cols=71  Identities=31%  Similarity=0.485  Sum_probs=63.4

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||++++        ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.+++.|||++..+
T Consensus        79 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~g---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  155 (323)
T 3tki_A           79 IQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVF  155 (323)
T ss_dssp             EEEEEEECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             eEEEEEEcCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccccchHHEEEeCCCCEEEEEeecccee
Confidence            468999998763        235999999999999999999999998   999999999999999999999999999866


Q ss_pred             ec
Q 043694           82 VK   83 (142)
Q Consensus        82 ~~   83 (142)
                      ..
T Consensus       156 ~~  157 (323)
T 3tki_A          156 RY  157 (323)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.53  E-value=1e-13  Score=97.09  Aligned_cols=71  Identities=44%  Similarity=0.642  Sum_probs=62.7

Q ss_pred             hhheeeeeCCCc-----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccce
Q 043694           10 YLYLIFDVDPIR-----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~-----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~   78 (142)
                      ..|+++||++++           ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+
T Consensus       104 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~kl~Dfg~~  180 (307)
T 2nru_A          104 DLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENH---HIHRDIKSANILLDEAFTAKISDFGLA  180 (307)
T ss_dssp             SCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCCTTC
T ss_pred             ceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCC---eecCCCCHHHEEEcCCCcEEEeecccc
Confidence            468899998653           245999999999999999999999998   999999999999999999999999998


Q ss_pred             eeeec
Q 043694           79 RIFVK   83 (142)
Q Consensus        79 ~~~~~   83 (142)
                      .....
T Consensus       181 ~~~~~  185 (307)
T 2nru_A          181 RASEK  185 (307)
T ss_dssp             EECCS
T ss_pred             ccccc
Confidence            76543

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.52  E-value=2.3e-14  Score=110.54  Aligned_cols=128  Identities=21%  Similarity=0.309  Sum_probs=90.6

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ++|+|+||++++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||+++..
T Consensus       416 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~g---IiHrDLKp~NILl~~~g~ikL~DFGla~~~  492 (674)
T 3pfq_A          416 RLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCKEN  492 (674)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTS---EECCCCCSTTEEECSSSCEEECCCTTCEEC
T ss_pred             EEEEEEeCcCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eEeccCChhhEEEcCCCcEEEeecceeecc
Confidence            5789999998743        45999999999999999999999998   999999999999999999999999998864


Q ss_pred             ecCcccccccccccchh--------------hhhhhhcCCcc-eeecCC---------------C--CCCCCHHHHHHHH
Q 043694           82 VKDDLEANTNRIVGTQE--------------SYNLWKDGKGR-KLMDPS---------------L--DDTHSSWKLLTCL  129 (142)
Q Consensus        82 ~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~-~~~d~~---------------~--~~~~~~~~~~~~~  129 (142)
                      ......  ....+|+++              ..+.|+.|-+. +++...               +  ...++......+.
T Consensus       493 ~~~~~~--~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~  570 (674)
T 3pfq_A          493 IWDGVT--TKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKSMSKEAV  570 (674)
T ss_dssp             CCTTCC--BCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHSSCCCCCTTSCHHHH
T ss_pred             ccCCcc--cccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHH
Confidence            332211  223444433              44555544221 111100               0  0122333345678


Q ss_pred             HHHHhccCccCCC
Q 043694          130 QIALLCVQENSND  142 (142)
Q Consensus       130 ~i~~~C~~~~p~~  142 (142)
                      ++...|++.||++
T Consensus       571 ~li~~lL~~dP~~  583 (674)
T 3pfq_A          571 AICKGLMTKHPGK  583 (674)
T ss_dssp             HHHHHHSCSSSTT
T ss_pred             HHHHHHccCCHHH
Confidence            8889999999974

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.52  E-value=3.3e-14  Score=100.10  Aligned_cols=70  Identities=24%  Similarity=0.273  Sum_probs=62.3

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||+.++        ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus       131 ~~~lv~e~~~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kl~DFG~a~~~  207 (311)
T 3p1a_A          131 ILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQG---LVHLDVKPANIFLGPRGRCKLGDFGLLVEL  207 (311)
T ss_dssp             EEEEEEECCCCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECGGGCEEECCCTTCEEC
T ss_pred             EEEEEEeccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHEEECCCCCEEEccceeeeec
Confidence            468999998542        245999999999999999999999998   999999999999999999999999998765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       208 ~  208 (311)
T 3p1a_A          208 G  208 (311)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.52  E-value=9e-15  Score=105.77  Aligned_cols=71  Identities=35%  Similarity=0.475  Sum_probs=62.9

Q ss_pred             hhheeeeeCCCcc------------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC
Q 043694           10 YLYLIFDVDPIRR------------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD   65 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~   65 (142)
                      ..|+|+||+++++                        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++
T Consensus       149 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~  225 (382)
T 3tt0_A          149 PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKK---CIHRDLAARNVLVT  225 (382)
T ss_dssp             SCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEC
T ss_pred             ceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCcceEEEc
Confidence            4789999987632                        24999999999999999999999998   99999999999999


Q ss_pred             CCCceEEecccceeeeec
Q 043694           66 EDLKSKISDFGLARIFVK   83 (142)
Q Consensus        66 ~~~~~~l~~fg~~~~~~~   83 (142)
                      .++.++++|||++.....
T Consensus       226 ~~~~~kL~DFG~a~~~~~  243 (382)
T 3tt0_A          226 EDNVMKIADFGLARDIHH  243 (382)
T ss_dssp             TTCCEEECSCSCCCCSSC
T ss_pred             CCCcEEEcccCccccccc
Confidence            999999999999876543

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.52  E-value=4.1e-14  Score=99.12  Aligned_cols=72  Identities=26%  Similarity=0.388  Sum_probs=64.0

Q ss_pred             hhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ..|+|+||++++.       ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++....
T Consensus        91 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~  167 (297)
T 3fxz_A           91 ELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQIT  167 (297)
T ss_dssp             EEEEEEECCTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECC
T ss_pred             EEEEEEECCCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCC---ceeCCCCHHHEEECCCCCEEEeeCCCceecC
Confidence            4789999987643       44899999999999999999999998   9999999999999999999999999987765


Q ss_pred             cC
Q 043694           83 KD   84 (142)
Q Consensus        83 ~~   84 (142)
                      ..
T Consensus       168 ~~  169 (297)
T 3fxz_A          168 PE  169 (297)
T ss_dssp             ST
T ss_pred             Cc
Confidence            43

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.52  E-value=1.9e-14  Score=103.34  Aligned_cols=69  Identities=28%  Similarity=0.412  Sum_probs=63.0

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ++|+|+||++++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        95 ~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~g~vkL~DFG~a~~~  171 (353)
T 2i0e_A           95 RLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCKEN  171 (353)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred             EEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---EEeccCCHHHEEEcCCCcEEEEeCCccccc
Confidence            5789999998743        46999999999999999999999998   999999999999999999999999998754

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.52  E-value=2.4e-14  Score=105.68  Aligned_cols=70  Identities=27%  Similarity=0.436  Sum_probs=62.4

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ..|+|+||+++++          ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||+++
T Consensus       261 ~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DfG~a~  337 (450)
T 1k9a_A          261 GLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTK  337 (450)
T ss_dssp             CEEEEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             ceEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCCHhhEEECCCCCEEEeeCCCcc
Confidence            5789999987642          23799999999999999999999998   9999999999999999999999999987


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      ...
T Consensus       338 ~~~  340 (450)
T 1k9a_A          338 EAS  340 (450)
T ss_dssp             ECC
T ss_pred             ccc
Confidence            543

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.51  E-value=1.3e-14  Score=104.10  Aligned_cols=69  Identities=25%  Similarity=0.393  Sum_probs=63.0

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+|+|+||++++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        98 ~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NILl~~~g~ikL~DFG~a~~~  174 (353)
T 3txo_A           98 RLFFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLHDKG---IIYRDLKLDNVLLDHEGHCKLADFGMCKEG  174 (353)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCS
T ss_pred             EEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---CcccCCCHHHEEECCCCCEEEccccceeec
Confidence            5789999998743        46999999999999999999999998   999999999999999999999999998753

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.51  E-value=7.8e-15  Score=104.00  Aligned_cols=69  Identities=29%  Similarity=0.496  Sum_probs=60.9

Q ss_pred             hheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           11 LYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        11 ~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+++++|+.++         ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        91 ~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~  167 (327)
T 3poz_A           91 VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL  167 (327)
T ss_dssp             EEEEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEETTEEEECCTTHHHHH
T ss_pred             eEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCC---eeCCCCChheEEECCCCCEEEccCcceeEc
Confidence            45778887653         355999999999999999999999998   999999999999999999999999998765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       168 ~  168 (327)
T 3poz_A          168 G  168 (327)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.50  E-value=7.4e-15  Score=103.97  Aligned_cols=72  Identities=28%  Similarity=0.448  Sum_probs=63.4

Q ss_pred             hhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|++|+.+++         ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++..
T Consensus        88 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~  164 (325)
T 3kex_A           88 SLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHG---MVHRNLAARNVLLKSPSQVQVADFGVADL  164 (325)
T ss_dssp             SEEEEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHTT---CCCSCCSSTTEEESSSSCEEECSCSGGGG
T ss_pred             ccEEEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhCC---CCCCccchheEEECCCCeEEECCCCcccc
Confidence            4678999987542         46899999999999999999999998   99999999999999999999999999987


Q ss_pred             eecC
Q 043694           81 FVKD   84 (142)
Q Consensus        81 ~~~~   84 (142)
                      ....
T Consensus       165 ~~~~  168 (325)
T 3kex_A          165 LPPD  168 (325)
T ss_dssp             SCCC
T ss_pred             cCcc
Confidence            6443

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.50  E-value=1.8e-14  Score=102.46  Aligned_cols=56  Identities=32%  Similarity=0.538  Sum_probs=52.4

Q ss_pred             cCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeeec
Q 043694           25 LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVK   83 (142)
Q Consensus        25 l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~~   83 (142)
                      +++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++.....
T Consensus       169 l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~  224 (344)
T 1rjb_A          169 LTFEDLLCFAYQVAKGMEFLEFKS---CVHRDLAARNVLVTHGKVVKICDFGLARDIMS  224 (344)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT---EEETTCSGGGEEEETTTEEEECCCGGGSCGGG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC---cccCCCChhhEEEcCCCcEEeCCCccCccccc
Confidence            799999999999999999999998   99999999999999999999999999876543

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.50  E-value=1.4e-14  Score=101.80  Aligned_cols=70  Identities=30%  Similarity=0.528  Sum_probs=63.4

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||++++         ...+++.++..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+..
T Consensus        81 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~  157 (310)
T 3s95_A           81 RLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMN---IIHRDLNSHNCLVRENKNVVVADFGLARL  157 (310)
T ss_dssp             EEEEEEECCTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEEECTTSCEEECCCTTCEE
T ss_pred             eeEEEEEecCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCCcCeEEECCCCCEEEeeccccee
Confidence            478999998763         356999999999999999999999999   99999999999999999999999999887


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       158 ~~  159 (310)
T 3s95_A          158 MV  159 (310)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.50  E-value=3.8e-14  Score=101.18  Aligned_cols=69  Identities=26%  Similarity=0.350  Sum_probs=62.8

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+|+|+||++++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        79 ~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~vkL~DFG~a~~~  155 (337)
T 1o6l_A           79 RLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRD---VVYRDIKLENLMLDKDGHIKITDFGLCKEG  155 (337)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCS
T ss_pred             EEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCcCCHHHEEECCCCCEEEeeccchhhc
Confidence            5789999998753        45899999999999999999999998   999999999999999999999999998754

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.50  E-value=4.3e-14  Score=101.22  Aligned_cols=70  Identities=29%  Similarity=0.438  Sum_probs=63.4

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||++++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        92 ~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~vkL~DFG~a~~~  168 (345)
T 1xjd_A           92 NLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKG---IVYRDLKLDNILLDKDGHIKIADFGMCKEN  168 (345)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred             EEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCChhhEEECCCCCEEEeEChhhhhc
Confidence            5799999987743        46999999999999999999999998   999999999999999999999999998754


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       169 ~  169 (345)
T 1xjd_A          169 M  169 (345)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.50  E-value=1.1e-13  Score=97.96  Aligned_cols=72  Identities=33%  Similarity=0.452  Sum_probs=63.3

Q ss_pred             hhhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhcc--------CCCceEecccCCCcEEeCCCCceEEe
Q 043694            9 LYLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEY--------SKLIVIHQDLKASNILLDEDLKSKIS   73 (142)
Q Consensus         9 ~~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~--------~~~~i~h~~l~~~nil~~~~~~~~l~   73 (142)
                      ...|+|+||++++.       ..+++..+..++.+++.|+.|+|+.        +   ++|+|+++.||+++.++.++++
T Consensus       108 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~---ivH~Dikp~Nill~~~~~~kl~  184 (337)
T 3mdy_A          108 TQLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPA---IAHRDLKSKNILVKKNGTCCIA  184 (337)
T ss_dssp             CEEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCC---EECSCCCGGGEEECTTSCEEEC
T ss_pred             CceEEEEeccCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCC---EEecccchHHEEECCCCCEEEE
Confidence            35789999988743       4599999999999999999999988        6   9999999999999999999999


Q ss_pred             cccceeeeec
Q 043694           74 DFGLARIFVK   83 (142)
Q Consensus        74 ~fg~~~~~~~   83 (142)
                      |||++..+..
T Consensus       185 Dfg~a~~~~~  194 (337)
T 3mdy_A          185 DLGLAVKFIS  194 (337)
T ss_dssp             CCTTCEECC-
T ss_pred             eCCCceeecc
Confidence            9999876543

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.50  E-value=2.9e-14  Score=106.48  Aligned_cols=70  Identities=27%  Similarity=0.450  Sum_probs=63.1

Q ss_pred             hhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ..|+|+||++++          ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||+++
T Consensus       290 ~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~  366 (495)
T 1opk_A          290 PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRNLAARNCLVGENHLVKVADFGLSR  366 (495)
T ss_dssp             SCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECGGGCEEECCTTCEE
T ss_pred             cEEEEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCChhhEEECCCCcEEEeecccce
Confidence            578999998753          245899999999999999999999998   9999999999999999999999999988


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      ...
T Consensus       367 ~~~  369 (495)
T 1opk_A          367 LMT  369 (495)
T ss_dssp             CCT
T ss_pred             ecc
Confidence            654

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.50  E-value=1.9e-14  Score=103.35  Aligned_cols=71  Identities=30%  Similarity=0.420  Sum_probs=62.4

Q ss_pred             hhheeeeeCCC--------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC--CCCceEEeccccee
Q 043694           10 YLYLIFDVDPI--------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD--EDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~--~~~~~~l~~fg~~~   79 (142)
                      +.|+|+||+.+        ....+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++  .++.++++|||+++
T Consensus       126 ~~~lv~e~~g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~---iiHrDlkp~Nill~~~~~~~~kl~DFG~a~  202 (364)
T 3op5_A          126 YRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHE---YVHGDIKASNLLLNYKNPDQVYLVDYGLAY  202 (364)
T ss_dssp             EEEEEEECEEEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEESSCTTCEEECCCTTCE
T ss_pred             eEEEEEeCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---eEEecCCHHHEEEecCCCCeEEEEECCcce
Confidence            47899999722        2256999999999999999999999998   99999999999998  78899999999998


Q ss_pred             eeec
Q 043694           80 IFVK   83 (142)
Q Consensus        80 ~~~~   83 (142)
                      .+..
T Consensus       203 ~~~~  206 (364)
T 3op5_A          203 RYCP  206 (364)
T ss_dssp             ESSG
T ss_pred             eccc
Confidence            7654

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.49  E-value=1e-13  Score=96.62  Aligned_cols=71  Identities=32%  Similarity=0.520  Sum_probs=62.9

Q ss_pred             hhheeeeeCCCc-------ccccCHHHHHHHHHHHHHHhhhhh--------ccCCCceEecccCCCcEEeCCCCceEEec
Q 043694           10 YLYLIFDVDPIR-------RFILDWKTCIHIIQGITQGLLYLQ--------EYSKLIVIHQDLKASNILLDEDLKSKISD   74 (142)
Q Consensus        10 ~~~lv~e~~~~~-------~~~l~~~~~~~~~~~i~~~l~~lh--------~~~~~~i~h~~l~~~nil~~~~~~~~l~~   74 (142)
                      ..|+|+||++++       ...+++..+..++.|++.|+.|||        +.+   ++|+|+++.||+++.++.++++|
T Consensus        80 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~---ivH~Dlkp~Nill~~~~~~kl~D  156 (301)
T 3q4u_A           80 QLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPA---IAHRDLKSKNILVKKNGQCCIAD  156 (301)
T ss_dssp             EEEEEECCCTTCBHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCE---EECSCCCGGGEEECTTSCEEECC
T ss_pred             eeEEehhhccCCCHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCC---eecCCCChHhEEEcCCCCEEEee
Confidence            368999998764       356999999999999999999999        666   99999999999999999999999


Q ss_pred             ccceeeeec
Q 043694           75 FGLARIFVK   83 (142)
Q Consensus        75 fg~~~~~~~   83 (142)
                      ||++.....
T Consensus       157 fg~a~~~~~  165 (301)
T 3q4u_A          157 LGLAVMHSQ  165 (301)
T ss_dssp             CTTCEEEET
T ss_pred             CCCeeeccc
Confidence            999876654

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.49  E-value=2.8e-14  Score=108.24  Aligned_cols=82  Identities=20%  Similarity=0.261  Sum_probs=65.2

Q ss_pred             hhhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..+||||||++++        ..+++..   .++.|++.|+.|+|+++   |+|||+|+.||+++.++.+|++|||+++.
T Consensus       315 ~~~yLVMEyv~G~~L~d~i~~~~~l~~~---~I~~QIl~AL~ylH~~G---IIHRDIKPeNILL~~dg~vKL~DFGlAr~  388 (569)
T 4azs_A          315 QSGWLVMEKLPGRLLSDMLAAGEEIDRE---KILGSLLRSLAALEKQG---FWHDDVRPWNVMVDARQHARLIDFGSIVT  388 (569)
T ss_dssp             SEEEEEEECCCSEEHHHHHHTTCCCCHH---HHHHHHHHHHHHHHHTT---CEESCCCGGGEEECTTSCEEECCCTTEES
T ss_pred             CEEEEEEecCCCCcHHHHHHhCCCCCHH---HHHHHHHHHHHHHHHCC---ceeccCchHhEEECCCCCEEEeecccCee
Confidence            3589999999874        3557665   47899999999999999   99999999999999999999999999987


Q ss_pred             eecCcccccccccccchh
Q 043694           81 FVKDDLEANTNRIVGTQE   98 (142)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~   98 (142)
                      ......  .....+||++
T Consensus       389 ~~~~~~--~~~t~vGTp~  404 (569)
T 4azs_A          389 TPQDCS--WPTNLVQSFF  404 (569)
T ss_dssp             CC---C--CSHHHHHHHH
T ss_pred             CCCCCc--cccCceechh
Confidence            654322  2334567766

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.49  E-value=3.4e-14  Score=100.69  Aligned_cols=72  Identities=26%  Similarity=0.492  Sum_probs=63.9

Q ss_pred             hhhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            9 LYLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ...|+|+||++++         ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++.
T Consensus       123 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~  199 (325)
T 3kul_A          123 RLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLG---YVHRDLAARNVLVDSNLVCKVSDFGLSR  199 (325)
T ss_dssp             GCCEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCSSCE
T ss_pred             CccEEEeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCcceEEECCCCCEEECCCCccc
Confidence            3578999998763         246999999999999999999999998   9999999999999999999999999988


Q ss_pred             eeec
Q 043694           80 IFVK   83 (142)
Q Consensus        80 ~~~~   83 (142)
                      ....
T Consensus       200 ~~~~  203 (325)
T 3kul_A          200 VLED  203 (325)
T ss_dssp             ECC-
T ss_pred             cccc
Confidence            7643

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.49  E-value=1.1e-14  Score=104.79  Aligned_cols=70  Identities=30%  Similarity=0.424  Sum_probs=60.0

Q ss_pred             hhheeeeeCCCcc---------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC---CceE
Q 043694           10 YLYLIFDVDPIRR---------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED---LKSK   71 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~---~~~~   71 (142)
                      ..|+|+||+++++               ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.+   ..++
T Consensus       148 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~~~~k  224 (367)
T 3l9p_A          148 PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENH---FIHRDIAARNCLLTCPGPGRVAK  224 (367)
T ss_dssp             SCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESCSSTTCCEE
T ss_pred             CCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChhhEEEecCCCCceEE
Confidence            4689999987632               34899999999999999999999998   9999999999999844   4699


Q ss_pred             Eecccceeeee
Q 043694           72 ISDFGLARIFV   82 (142)
Q Consensus        72 l~~fg~~~~~~   82 (142)
                      ++|||+++...
T Consensus       225 L~DFG~a~~~~  235 (367)
T 3l9p_A          225 IGDFGMARDIY  235 (367)
T ss_dssp             ECCCHHHHHHH
T ss_pred             ECCCccccccc
Confidence            99999987543

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.49  E-value=6.2e-14  Score=97.95  Aligned_cols=71  Identities=32%  Similarity=0.505  Sum_probs=63.5

Q ss_pred             hhheeeeeCCCc-------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIR-------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~-------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ..|+|+||++++       ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++....
T Consensus       112 ~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~  188 (298)
T 2zv2_A          112 HLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLHYQK---IIHRDIKPSNLLVGEDGHIKIADFGVSNEFK  188 (298)
T ss_dssp             EEEEEEECCTTCBSCCSSCSSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCTTCEECS
T ss_pred             EEEEEEecCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHEEECCCCCEEEecCCCccccc
Confidence            578999998753       345999999999999999999999998   9999999999999999999999999987654


Q ss_pred             c
Q 043694           83 K   83 (142)
Q Consensus        83 ~   83 (142)
                      .
T Consensus       189 ~  189 (298)
T 2zv2_A          189 G  189 (298)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.49  E-value=3.5e-14  Score=99.59  Aligned_cols=57  Identities=44%  Similarity=0.611  Sum_probs=52.9

Q ss_pred             ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeeec
Q 043694           24 ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVK   83 (142)
Q Consensus        24 ~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~~   83 (142)
                      .+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++.....
T Consensus       146 ~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~  202 (314)
T 2ivs_A          146 ALTMGDLISFAWQISQGMQYLAEMK---LVHRDLAARNILVAEGRKMKISDFGLSRDVYE  202 (314)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTEEEECCCTTCEECTT
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHCC---CcccccchheEEEcCCCCEEEccccccccccc
Confidence            3899999999999999999999998   99999999999999999999999999876643

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.49  E-value=1.8e-13  Score=95.31  Aligned_cols=70  Identities=30%  Similarity=0.446  Sum_probs=63.4

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||++++        ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+...
T Consensus        75 ~~~lv~e~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~---ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~  151 (292)
T 3o0g_A           75 KLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRN---VLHRDLKPQNLLINRNGELKLANFGLARAF  151 (292)
T ss_dssp             EEEEEEECCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EEEEEEecCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEeecccceec
Confidence            478999998753        356999999999999999999999998   999999999999999999999999998765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       152 ~  152 (292)
T 3o0g_A          152 G  152 (292)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.49  E-value=4.8e-14  Score=100.88  Aligned_cols=69  Identities=26%  Similarity=0.347  Sum_probs=62.8

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||++++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        84 ~~~lv~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~~kL~DFG~a~~~  160 (345)
T 3a8x_A           84 RLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERG---IIYRDLKLDNVLLDSEGHIKLTDYGMCKEG  160 (345)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCGGGCBCS
T ss_pred             EEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCHHHEEECCCCCEEEEeccccccc
Confidence            5789999987643        45999999999999999999999998   999999999999999999999999998753

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.48  E-value=1.2e-14  Score=103.93  Aligned_cols=55  Identities=40%  Similarity=0.534  Sum_probs=52.0

Q ss_pred             cCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           25 LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        25 l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      +++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++....
T Consensus       190 l~~~~~~~~~~ql~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~  244 (359)
T 3vhe_A          190 LTLEHLICYSFQVAKGMEFLASRK---CIHRDLAARNILLSEKNVVKICDFGLARDIY  244 (359)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCGGGSCTT
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChhhEEEcCCCcEEEEeccceeeec
Confidence            899999999999999999999998   9999999999999999999999999987653

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.48  E-value=4.1e-14  Score=100.58  Aligned_cols=71  Identities=32%  Similarity=0.500  Sum_probs=63.5

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||++++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        88 ~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~~  164 (328)
T 3fe3_A           88 TLYLIMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQKR---IVHRDLKAENLLLDADMNIKIADFGFSNEF  164 (328)
T ss_dssp             EEEEEECCCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECSTTCCGGG
T ss_pred             EEEEEEECCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---EeccCCCHHHEEEcCCCCEEEeeccCceec
Confidence            4789999987643        45999999999999999999999998   999999999999999999999999998765


Q ss_pred             ec
Q 043694           82 VK   83 (142)
Q Consensus        82 ~~   83 (142)
                      ..
T Consensus       165 ~~  166 (328)
T 3fe3_A          165 TV  166 (328)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.48  E-value=1.3e-13  Score=97.68  Aligned_cols=70  Identities=30%  Similarity=0.548  Sum_probs=62.3

Q ss_pred             hhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhcc---------CCCceEecccCCCcEEeCCCCceEEe
Q 043694           10 YLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEY---------SKLIVIHQDLKASNILLDEDLKSKIS   73 (142)
Q Consensus        10 ~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~---------~~~~i~h~~l~~~nil~~~~~~~~l~   73 (142)
                      ..|+|+||+++++       ..+++..+..++.|++.|+.|||+.         +   ++|+|+++.||+++.++.++++
T Consensus        86 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~---ivH~Dikp~Nill~~~~~~kL~  162 (336)
T 3g2f_A           86 EYLLVMEYYPNGSLXKYLSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPA---ISHRDLNSRNVLVKNDGTCVIS  162 (336)
T ss_dssp             EEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCC---EECSSCSGGGEEECTTSCEEEC
T ss_pred             eEEEEEecCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhccccccccc---eeecccccceEEEcCCCcEEEe
Confidence            3589999987643       4478999999999999999999998         6   9999999999999999999999


Q ss_pred             cccceeeee
Q 043694           74 DFGLARIFV   82 (142)
Q Consensus        74 ~fg~~~~~~   82 (142)
                      |||++..+.
T Consensus       163 DFG~a~~~~  171 (336)
T 3g2f_A          163 DFGLSMRLT  171 (336)
T ss_dssp             CCTTCEECS
T ss_pred             eccceeecc
Confidence            999997654

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.48  E-value=2e-14  Score=102.45  Aligned_cols=70  Identities=23%  Similarity=0.420  Sum_probs=58.4

Q ss_pred             hhheeeeeCCC-------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPI-------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~-------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      +.|+|+|+...       ....+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++ ++.++++|||++....
T Consensus        83 ~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~---iiHrDikp~NIll~-~~~~kl~DFG~a~~~~  158 (343)
T 3dbq_A           83 YIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHG---IVHSDLKPANFLIV-DGMLKLIDFGIANQMQ  158 (343)
T ss_dssp             EEEEEECCCSEEHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEE-TTEEEECCCSSSCCC-
T ss_pred             EEEEEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCcceEEEE-CCcEEEeecccccccC
Confidence            46888886432       2356899999999999999999999998   99999999999996 5779999999987654


Q ss_pred             c
Q 043694           83 K   83 (142)
Q Consensus        83 ~   83 (142)
                      .
T Consensus       159 ~  159 (343)
T 3dbq_A          159 P  159 (343)
T ss_dssp             -
T ss_pred             c
Confidence            3

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.48  E-value=4.6e-14  Score=99.56  Aligned_cols=69  Identities=32%  Similarity=0.503  Sum_probs=58.1

Q ss_pred             heeeeeCCCcc--------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccc
Q 043694           12 YLIFDVDPIRR--------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus        12 ~lv~e~~~~~~--------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      |+++||+.++.              ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.
T Consensus       107 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~---ivH~Dikp~NIli~~~~~~kl~Dfg~  183 (323)
T 3qup_A          107 MVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRN---FIHRDLAARNCMLAEDMTVCVADFGL  183 (323)
T ss_dssp             EEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTSCEEECCCCC
T ss_pred             EEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCC---cccCCCCcceEEEcCCCCEEEeeccc
Confidence            88999987643              15899999999999999999999998   99999999999999999999999999


Q ss_pred             eeeeec
Q 043694           78 ARIFVK   83 (142)
Q Consensus        78 ~~~~~~   83 (142)
                      +.....
T Consensus       184 a~~~~~  189 (323)
T 3qup_A          184 SRKIYS  189 (323)
T ss_dssp             ------
T ss_pred             cccccc
Confidence            876543

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.47  E-value=6.3e-14  Score=101.73  Aligned_cols=71  Identities=30%  Similarity=0.437  Sum_probs=64.0

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||+.++.        ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++..+
T Consensus        89 ~~~lv~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~g~vkL~DFG~a~~~  165 (384)
T 4fr4_A           89 DMFMVVDLLLGGDLRYHLQQNVHFKEETVKLFICELVMALDYLQNQR---IIHRDMKPDNILLDEHGHVHITDFNIAAML  165 (384)
T ss_dssp             EEEEEECCCTTEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCcHHHeEECCCCCEEEeccceeeec
Confidence            4789999987643        46999999999999999999999999   999999999999999999999999999876


Q ss_pred             ec
Q 043694           82 VK   83 (142)
Q Consensus        82 ~~   83 (142)
                      ..
T Consensus       166 ~~  167 (384)
T 4fr4_A          166 PR  167 (384)
T ss_dssp             CT
T ss_pred             cC
Confidence            43

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.47  E-value=3.9e-14  Score=102.85  Aligned_cols=70  Identities=23%  Similarity=0.420  Sum_probs=58.1

Q ss_pred             hhheeeeeCCC-------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPI-------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~-------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      +.|+|+|+...       ....+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++ ++.++++|||++..+.
T Consensus       130 ~~~lv~E~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~---ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~  205 (390)
T 2zmd_A          130 YIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHG---IVHSDLKPANFLIV-DGMLKLIDFGIANQMQ  205 (390)
T ss_dssp             EEEEEEECCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHTTT---CCCCCCCGGGEEES-SSCEEECCCSSSCCC-
T ss_pred             EEEEEEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHEEEE-CCeEEEEecCcccccc
Confidence            46888996432       1346899999999999999999999998   99999999999995 5789999999987654


Q ss_pred             c
Q 043694           83 K   83 (142)
Q Consensus        83 ~   83 (142)
                      .
T Consensus       206 ~  206 (390)
T 2zmd_A          206 P  206 (390)
T ss_dssp             -
T ss_pred             C
Confidence            3

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.47  E-value=1.1e-13  Score=101.87  Aligned_cols=69  Identities=28%  Similarity=0.349  Sum_probs=62.2

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhc-cCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQE-YSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||++++.        ..+++..+..++.|++.|+.|||+ .+   ++|+|+++.||+++.++.++++|||++..
T Consensus       222 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~g---iiHrDlkp~NIll~~~~~~kl~DFG~a~~  298 (446)
T 4ejn_A          222 RLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKN---VVYRDLKLENLMLDKDGHIKITDFGLCKE  298 (446)
T ss_dssp             EEEEEECCCSSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTC---CCCCCCCGGGEEECSSSCEEECCCCCCCT
T ss_pred             EEEEEEeeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcCC---EEECCCCHHHEEECCCCCEEEccCCCcee
Confidence            4789999998753        458999999999999999999998 77   99999999999999999999999999875


Q ss_pred             e
Q 043694           81 F   81 (142)
Q Consensus        81 ~   81 (142)
                      .
T Consensus       299 ~  299 (446)
T 4ejn_A          299 G  299 (446)
T ss_dssp             T
T ss_pred             c
Confidence            3

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.47  E-value=4e-14  Score=102.90  Aligned_cols=71  Identities=25%  Similarity=0.448  Sum_probs=63.4

Q ss_pred             hhheeeeeCCCc-----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC-CCCceEEecccc
Q 043694           10 YLYLIFDVDPIR-----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD-EDLKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~-----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~-~~~~~~l~~fg~   77 (142)
                      ++|+|+||++++           ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++ .++.++++|||+
T Consensus       112 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~Nill~~~~~~~kL~DFG~  188 (394)
T 4e7w_A          112 FLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIG---ICHRDIKPQNLLLDPPSGVLKLIDFGS  188 (394)
T ss_dssp             EEEEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEETTTTEEEECCCTT
T ss_pred             EEEEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCCHHHEEEcCCCCcEEEeeCCC
Confidence            478999998763           456999999999999999999999998   99999999999998 788999999999


Q ss_pred             eeeeec
Q 043694           78 ARIFVK   83 (142)
Q Consensus        78 ~~~~~~   83 (142)
                      ++.+..
T Consensus       189 a~~~~~  194 (394)
T 4e7w_A          189 AKILIA  194 (394)
T ss_dssp             CEECCT
T ss_pred             cccccC
Confidence            987643

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.47  E-value=2e-14  Score=103.86  Aligned_cols=71  Identities=28%  Similarity=0.523  Sum_probs=57.8

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||++++         ...+++.++..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||+++.
T Consensus       120 ~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~  196 (373)
T 2qol_A          120 PVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLGRV  196 (373)
T ss_dssp             SCEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCC-----
T ss_pred             ceEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCcceEEEcCCCCEEECcCccccc
Confidence            478999998763         236999999999999999999999998   99999999999999999999999999876


Q ss_pred             eec
Q 043694           81 FVK   83 (142)
Q Consensus        81 ~~~   83 (142)
                      ...
T Consensus       197 ~~~  199 (373)
T 2qol_A          197 LED  199 (373)
T ss_dssp             ---
T ss_pred             ccc
Confidence            643

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.47  E-value=7.4e-14  Score=99.65  Aligned_cols=71  Identities=27%  Similarity=0.455  Sum_probs=62.5

Q ss_pred             hhheeeeeCCCc-------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIR-------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~-------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ..|+|+||+.++       ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++....
T Consensus        83 ~~~lv~E~~~g~l~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivH~Dlkp~NIll~~~~~~kl~DFG~s~~~~  159 (336)
T 3h4j_B           83 DIVMVIEYAGGELFDYIVEKKRMTEDEGRRFFQQIICAIEYCHRHK---IVHRDLKPENLLLDDNLNVKIADFGLSNIMT  159 (336)
T ss_dssp             EEEEEECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCSTTTEEECTTCCEEECCSSCTBTTT
T ss_pred             EEEEEEECCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCchhhEEEcCCCCEEEEEeccceecc
Confidence            468999998542       255899999999999999999999999   9999999999999999999999999987654


Q ss_pred             c
Q 043694           83 K   83 (142)
Q Consensus        83 ~   83 (142)
                      .
T Consensus       160 ~  160 (336)
T 3h4j_B          160 D  160 (336)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.47  E-value=1e-13  Score=99.36  Aligned_cols=70  Identities=23%  Similarity=0.327  Sum_probs=63.5

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||++++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus       115 ~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~~kL~DFg~a~~~  191 (350)
T 1rdq_E          115 NLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD---LIYRDLKPENLLIDQQGYIQVTDFGFAKRV  191 (350)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EEEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCccceEEECCCCCEEEcccccceec
Confidence            5799999987643        45899999999999999999999999   999999999999999999999999998865


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       192 ~  192 (350)
T 1rdq_E          192 K  192 (350)
T ss_dssp             S
T ss_pred             c
Confidence            4

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.47  E-value=3.5e-14  Score=102.66  Aligned_cols=69  Identities=28%  Similarity=0.339  Sum_probs=62.7

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ++|+|+||++++.        ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||+++..
T Consensus       113 ~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~g~ikL~DFG~a~~~  189 (373)
T 2r5t_A          113 KLYFVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLN---IVYRDLKPENILLDSQGHIVLTDFGLCKEN  189 (373)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCCBCGGG
T ss_pred             EEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCHHHEEECCCCCEEEeeCcccccc
Confidence            5799999998753        45899999999999999999999998   999999999999999999999999998753

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.47  E-value=4.2e-14  Score=103.00  Aligned_cols=71  Identities=21%  Similarity=0.384  Sum_probs=62.3

Q ss_pred             hhhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC---CCceEEecc
Q 043694            9 LYLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE---DLKSKISDF   75 (142)
Q Consensus         9 ~~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~---~~~~~l~~f   75 (142)
                      .++|+|+||++++.          ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.   ++.++++||
T Consensus       132 ~~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~Nill~~~~~~~~~kl~DF  208 (400)
T 1nxk_A          132 KCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDF  208 (400)
T ss_dssp             EEEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSTTCCEEECCC
T ss_pred             cEEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCcCcceEEEecCCCCccEEEEec
Confidence            35789999987632          35999999999999999999999998   999999999999987   688999999


Q ss_pred             cceeeee
Q 043694           76 GLARIFV   82 (142)
Q Consensus        76 g~~~~~~   82 (142)
                      |++....
T Consensus       209 G~a~~~~  215 (400)
T 1nxk_A          209 GFAKETT  215 (400)
T ss_dssp             TTCEECC
T ss_pred             ccccccC
Confidence            9988654

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.46  E-value=8.4e-14  Score=98.18  Aligned_cols=72  Identities=31%  Similarity=0.529  Sum_probs=63.0

Q ss_pred             hhheeeeeCCCcc-----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccce
Q 043694           10 YLYLIFDVDPIRR-----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~~-----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~   78 (142)
                      +.|+++||++++.           ...++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++
T Consensus       135 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~DfG~a  211 (332)
T 3qd2_B          135 YLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFGLV  211 (332)
T ss_dssp             EEEEEEECCCSSCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             eEEEEEEecCCCCHHHHHhcccCccchhhHHHHHHHHHHHHHHHHHHhCC---eeecCCCcccEEEeCCCCEEEeecCcc
Confidence            5899999987743           33677778999999999999999998   999999999999999999999999998


Q ss_pred             eeeecC
Q 043694           79 RIFVKD   84 (142)
Q Consensus        79 ~~~~~~   84 (142)
                      ......
T Consensus       212 ~~~~~~  217 (332)
T 3qd2_B          212 TAMDQD  217 (332)
T ss_dssp             EECSCC
T ss_pred             cccccc
Confidence            876543

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.46  E-value=1.7e-13  Score=96.98  Aligned_cols=71  Identities=30%  Similarity=0.449  Sum_probs=63.8

Q ss_pred             hhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ..|+|+||++++.       ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++....
T Consensus       116 ~~~lv~e~~~~~~L~~~l~~~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~  192 (321)
T 2c30_A          116 ELWVLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQG---VIHRDIKSDSILLTLDGRVKLSDFGFCAQIS  192 (321)
T ss_dssp             EEEEEECCCCSCBHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECC
T ss_pred             EEEEEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCcEEEeeeeeeeecc
Confidence            4789999987643       46999999999999999999999998   9999999999999999999999999987765


Q ss_pred             c
Q 043694           83 K   83 (142)
Q Consensus        83 ~   83 (142)
                      .
T Consensus       193 ~  193 (321)
T 2c30_A          193 K  193 (321)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.46  E-value=2.3e-13  Score=97.38  Aligned_cols=71  Identities=25%  Similarity=0.457  Sum_probs=61.5

Q ss_pred             hhheeeeeCCCcc------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC---ceEEec
Q 043694           10 YLYLIFDVDPIRR------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL---KSKISD   74 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~---~~~l~~   74 (142)
                      ..|+|+||++++.            ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.+.   .++++|
T Consensus       100 ~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivHrDlkp~NIl~~~~~~~~~vkl~D  176 (351)
T 3c0i_A          100 MLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNN---IIHRDVKPHCVLLASKENSAPVKLGG  176 (351)
T ss_dssp             EEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECSSSTTCCEEECC
T ss_pred             EEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCChHHeEEecCCCCCcEEEec
Confidence            5799999988643            24899999999999999999999998   99999999999997544   499999


Q ss_pred             ccceeeeec
Q 043694           75 FGLARIFVK   83 (142)
Q Consensus        75 fg~~~~~~~   83 (142)
                      ||++.....
T Consensus       177 fg~a~~~~~  185 (351)
T 3c0i_A          177 FGVAIQLGE  185 (351)
T ss_dssp             CTTCEECCT
T ss_pred             CcceeEecC
Confidence            999987654

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.45  E-value=2.8e-13  Score=95.90  Aligned_cols=70  Identities=29%  Similarity=0.381  Sum_probs=63.4

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||++++.        ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        80 ~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~  156 (318)
T 1fot_A           80 QIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKD---IIYRDLKPENILLDKNGHIKITDFGFAKYV  156 (318)
T ss_dssp             EEEEEECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECTTSCEEECCCSSCEEC
T ss_pred             EEEEEEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChheEEEcCCCCEEEeecCcceec
Confidence            5789999988643        45899999999999999999999998   999999999999999999999999998865


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       157 ~  157 (318)
T 1fot_A          157 P  157 (318)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.45  E-value=2.5e-14  Score=105.70  Aligned_cols=70  Identities=31%  Similarity=0.517  Sum_probs=62.7

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ..|+|+||+++++          ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||+++
T Consensus       256 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DFG~a~  332 (454)
T 1qcf_A          256 PIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN---YIHRDLRAANILVSASLVCKIADFGLAR  332 (454)
T ss_dssp             SCEEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCSGGGEEECTTCCEEECSTTGGG
T ss_pred             ccEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCCHHHEEECCCCcEEEeeCCCce
Confidence            4789999987643          35889999999999999999999998   9999999999999999999999999987


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      ...
T Consensus       333 ~~~  335 (454)
T 1qcf_A          333 VIE  335 (454)
T ss_dssp             GBC
T ss_pred             EcC
Confidence            654

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.45  E-value=1.5e-13  Score=94.57  Aligned_cols=72  Identities=29%  Similarity=0.474  Sum_probs=64.0

Q ss_pred             hhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||++++.         ..+++..+..++.+++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||.+..
T Consensus        77 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~~l~Dfg~~~~  153 (268)
T 3sxs_A           77 PIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQ---FIHRDLAARNCLVDRDLCVKVSDFGMTRY  153 (268)
T ss_dssp             SEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTT---EEESSCSGGGEEECTTCCEEECCTTCEEE
T ss_pred             ceEEEEEccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCcCcceEEECCCCCEEEccCcccee
Confidence            4689999987642         45999999999999999999999998   99999999999999999999999999886


Q ss_pred             eecC
Q 043694           81 FVKD   84 (142)
Q Consensus        81 ~~~~   84 (142)
                      ....
T Consensus       154 ~~~~  157 (268)
T 3sxs_A          154 VLDD  157 (268)
T ss_dssp             CCTT
T ss_pred             cchh
Confidence            6443

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.45  E-value=1.3e-13  Score=96.15  Aligned_cols=72  Identities=31%  Similarity=0.490  Sum_probs=61.6

Q ss_pred             hhhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            9 LYLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ...|+|+||+++++         ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++.
T Consensus        86 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dikp~Nil~~~~~~~kl~Dfg~~~  162 (295)
T 3ugc_A           86 RNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTK  162 (295)
T ss_dssp             TSCEEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCCCSCC
T ss_pred             CceEEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhcCC---cccCCCCHhhEEEcCCCeEEEccCcccc
Confidence            34789999987632         34999999999999999999999998   9999999999999999999999999987


Q ss_pred             eeec
Q 043694           80 IFVK   83 (142)
Q Consensus        80 ~~~~   83 (142)
                      ....
T Consensus       163 ~~~~  166 (295)
T 3ugc_A          163 VLPQ  166 (295)
T ss_dssp             ----
T ss_pred             cccC
Confidence            6543

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.45  E-value=1.5e-13  Score=101.01  Aligned_cols=71  Identities=31%  Similarity=0.537  Sum_probs=62.7

Q ss_pred             hhheeeeeCCC-------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPI-------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~-------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ..|+|+||+.+       ....+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||+++...
T Consensus       104 ~~~lv~e~~~~~L~~~~~~~~~l~~~~~~~i~~qil~aL~~LH~~g---ivHrDlkp~NILl~~~~~~kL~DFGla~~~~  180 (432)
T 3n9x_A          104 ELYIVLEIADSDLKKLFKTPIFLTEEHIKTILYNLLLGENFIHESG---IIHRDLKPANCLLNQDCSVKVCDFGLARTIN  180 (432)
T ss_dssp             CEEEEEECCSEEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEEC-
T ss_pred             eEEEEEecCCcCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHeEECCCCCEEEccCCCccccc
Confidence            47899999765       2345999999999999999999999999   9999999999999999999999999998764


Q ss_pred             c
Q 043694           83 K   83 (142)
Q Consensus        83 ~   83 (142)
                      .
T Consensus       181 ~  181 (432)
T 3n9x_A          181 S  181 (432)
T ss_dssp             -
T ss_pred             c
Confidence            3

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.45  E-value=1.9e-13  Score=95.07  Aligned_cols=72  Identities=22%  Similarity=0.381  Sum_probs=62.7

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEe---CCCCceEEecccce
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL---DEDLKSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~---~~~~~~~l~~fg~~   78 (142)
                      +.|+++||+.+.        ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||++   +.++.++++|||.+
T Consensus        79 ~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a  155 (296)
T 4hgt_A           79 YNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFGLA  155 (296)
T ss_dssp             EEEEEEECCCCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECCGGGTTCEEECCCTTC
T ss_pred             ceEEEEEccCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeeeeccCCCCeEEEecCccc
Confidence            468999998331        356999999999999999999999999   9999999999999   67889999999999


Q ss_pred             eeeecC
Q 043694           79 RIFVKD   84 (142)
Q Consensus        79 ~~~~~~   84 (142)
                      ......
T Consensus       156 ~~~~~~  161 (296)
T 4hgt_A          156 KKYRDA  161 (296)
T ss_dssp             EECBCT
T ss_pred             eeccCc
Confidence            876543

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.45  E-value=3.9e-14  Score=100.33  Aligned_cols=71  Identities=28%  Similarity=0.418  Sum_probs=62.2

Q ss_pred             hhheeeeeCCCcc----------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC
Q 043694           10 YLYLIFDVDPIRR----------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED   67 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~   67 (142)
                      ..|+|+||+++++                      ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.+
T Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~NIl~~~~  200 (333)
T 2i1m_A          124 PVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKN---CIHRDVAARNVLLTNG  200 (333)
T ss_dssp             SCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGCEEEGG
T ss_pred             ceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCC---cccCCcccceEEECCC
Confidence            4788999987632                      34799999999999999999999998   9999999999999999


Q ss_pred             CceEEecccceeeeec
Q 043694           68 LKSKISDFGLARIFVK   83 (142)
Q Consensus        68 ~~~~l~~fg~~~~~~~   83 (142)
                      +.++++|||++.....
T Consensus       201 ~~~kl~Dfg~~~~~~~  216 (333)
T 2i1m_A          201 HVAKIGDFGLARDIMN  216 (333)
T ss_dssp             GEEEBCCCGGGCCGGG
T ss_pred             CeEEECcccccccccc
Confidence            9999999999876543

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.45  E-value=1.2e-13  Score=99.96  Aligned_cols=70  Identities=34%  Similarity=0.551  Sum_probs=62.9

Q ss_pred             hhheeeeeCCCc------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIR------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ..|+|+||+++.      ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||+++.+.
T Consensus        85 ~~~lv~e~~~~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~  160 (388)
T 3oz6_A           85 DVYLVFDYMETDLHAVIRANILEPVHKQYVVYQLIKVIKYLHSGG---LLHRDMKPSNILLNAECHVKVADFGLSRSFV  160 (388)
T ss_dssp             CEEEEEECCSEEHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEESS
T ss_pred             EEEEEecccCcCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCC---EEeCCCCHHHeEEcCCCCEEecCCccccccc
Confidence            579999998752      245899999999999999999999999   9999999999999999999999999998653

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.45  E-value=4.4e-14  Score=99.02  Aligned_cols=57  Identities=37%  Similarity=0.561  Sum_probs=52.9

Q ss_pred             ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeeec
Q 043694           24 ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVK   83 (142)
Q Consensus        24 ~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~~   83 (142)
                      .+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+.....
T Consensus       141 ~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  197 (313)
T 1t46_A          141 ALDLEDLLSFSYQVAKGMAFLASKN---CIHRDLAARNILLTHGRITKICDFGLARDIKN  197 (313)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEETTTEEEECCCGGGSCTTS
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCccceEEEcCCCCEEEccccccccccc
Confidence            4899999999999999999999998   99999999999999999999999999876543

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.45  E-value=3.8e-13  Score=94.76  Aligned_cols=70  Identities=29%  Similarity=0.421  Sum_probs=62.5

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||++++        ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        93 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~  169 (311)
T 3niz_A           93 CLTLVFEFMEKDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHR---ILHRDLKPQNLLINSDGALKLADFGLARAF  169 (311)
T ss_dssp             CEEEEEECCSEEHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEET
T ss_pred             EEEEEEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCchHhEEECCCCCEEEccCcCceec
Confidence            468999998752        344999999999999999999999998   999999999999999999999999998765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       170 ~  170 (311)
T 3niz_A          170 G  170 (311)
T ss_dssp             T
T ss_pred             C
Confidence            4

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.44  E-value=2.8e-14  Score=99.76  Aligned_cols=70  Identities=29%  Similarity=0.453  Sum_probs=62.5

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||+++++        ..+++..+..++.+++.|+.|+|+.+   ++|+|+++.||+++.++.+++.|||++...
T Consensus        85 ~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~  161 (294)
T 4eqm_A           85 CYYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDMR---IVHRDIKPQNILIDSNKTLKIFDFGIAKAL  161 (294)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCSSSTTC
T ss_pred             eEEEEEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEEeCCCcccc
Confidence            4789999987643        45899999999999999999999998   999999999999999999999999988755


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       162 ~  162 (294)
T 4eqm_A          162 S  162 (294)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.44  E-value=1.5e-13  Score=101.41  Aligned_cols=70  Identities=27%  Similarity=0.499  Sum_probs=62.7

Q ss_pred             hhheeeeeCCC-------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPI-------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~-------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .+|+|+||+.+       ....+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||+++...
T Consensus       131 ~~~lv~e~~~~~L~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~---iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  207 (458)
T 3rp9_A          131 ELYVVLEIADSDFKKLFRTPVYLTELHIKTLLYNLLVGVKYVHSAG---ILHRDLKPANCLVNQDCSVKVCDFGLARTVD  207 (458)
T ss_dssp             CEEEEECCCSEEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTCCEEECCCTTCBCTT
T ss_pred             eEEEEEeccccchhhhcccCCCCCHHHHHHHHHHHHHHHHHHHhCC---cCCCCCChhhEEECCCCCEeecccccchhcc
Confidence            47899998764       2355999999999999999999999998   9999999999999999999999999998653

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.44  E-value=1.1e-13  Score=97.16  Aligned_cols=71  Identities=24%  Similarity=0.408  Sum_probs=59.6

Q ss_pred             hhheeeeeCCCc--------------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecc
Q 043694           10 YLYLIFDVDPIR--------------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDF   75 (142)
Q Consensus        10 ~~~lv~e~~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~f   75 (142)
                      +.|++++|++++              ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++||
T Consensus       115 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dikp~NIli~~~~~~kl~Df  191 (313)
T 3brb_A          115 KPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRN---FLHRDLAARNCMLRDDMTVCVADF  191 (313)
T ss_dssp             CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTT---CCCCCCSGGGEEECTTSCEEECSC
T ss_pred             ccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCcceEEEcCCCcEEEeec
Confidence            348899997652              245999999999999999999999998   999999999999999999999999


Q ss_pred             cceeeeec
Q 043694           76 GLARIFVK   83 (142)
Q Consensus        76 g~~~~~~~   83 (142)
                      |++.....
T Consensus       192 g~~~~~~~  199 (313)
T 3brb_A          192 GLSKKIYS  199 (313)
T ss_dssp             SCC-----
T ss_pred             Ccceeccc
Confidence            99876543

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.44  E-value=1.3e-13  Score=99.30  Aligned_cols=69  Identities=12%  Similarity=0.179  Sum_probs=58.4

Q ss_pred             hheeeeeCCCc--------ccccCHHHH------HHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccc
Q 043694           11 LYLIFDVDPIR--------RFILDWKTC------IHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFG   76 (142)
Q Consensus        11 ~~lv~e~~~~~--------~~~l~~~~~------~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg   76 (142)
                      .|+|+||+++.        ...+.+..+      ..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||
T Consensus       163 ~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~---ivHrDikp~NIll~~~~~~kL~DFG  239 (371)
T 3q60_A          163 YLLLMPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKG---LVHGHFTPDNLFIMPDGRLMLGDVS  239 (371)
T ss_dssp             EEEEECCCSEEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT---EEETTCSGGGEEECTTSCEEECCGG
T ss_pred             EEEEecCCCCCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHHCC---CccCcCCHHHEEECCCCCEEEEecc
Confidence            69999998731        123555556      677899999999999999   9999999999999999999999999


Q ss_pred             ceeeee
Q 043694           77 LARIFV   82 (142)
Q Consensus        77 ~~~~~~   82 (142)
                      ++....
T Consensus       240 ~a~~~~  245 (371)
T 3q60_A          240 ALWKVG  245 (371)
T ss_dssp             GEEETT
T ss_pred             eeeecC
Confidence            988654

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.44  E-value=1.1e-13  Score=99.15  Aligned_cols=70  Identities=30%  Similarity=0.340  Sum_probs=63.1

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||++++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||+++.+
T Consensus       133 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~  209 (355)
T 1vzo_A          133 KLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLG---IIYRDIKLENILLDSNGHVVLTDFGLSKEF  209 (355)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEESCSSEEEEC
T ss_pred             eEEEEeecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCcEEEeeCCCCeec
Confidence            4789999987643        45899999999999999999999998   999999999999999999999999998865


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       210 ~  210 (355)
T 1vzo_A          210 V  210 (355)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.44  E-value=3.8e-14  Score=100.60  Aligned_cols=57  Identities=33%  Similarity=0.541  Sum_probs=52.8

Q ss_pred             cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           23 FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        23 ~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+....
T Consensus       169 ~~l~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~  225 (343)
T 1luf_A          169 PPLSCAEQLCIARQVAAGMAYLSERK---FVHRDLATRNCLVGENMVVKIADFGLSRNIY  225 (343)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCSCHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCcceEEECCCCeEEEeecCCCcccc
Confidence            46899999999999999999999998   9999999999999999999999999886543

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.44  E-value=3.4e-13  Score=94.57  Aligned_cols=70  Identities=31%  Similarity=0.478  Sum_probs=61.4

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.|+++||+.+.         ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+..
T Consensus        93 ~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~  169 (308)
T 3g33_A           93 KVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARI  169 (308)
T ss_dssp             EEEEEEECCCCBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCTTTEEECTTSCEEECSCSCTTT
T ss_pred             eEEEEehhhhcCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEcCCCCEEEeeCccccc
Confidence            468899987652         123899999999999999999999999   99999999999999999999999999875


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       170 ~~  171 (308)
T 3g33_A          170 YS  171 (308)
T ss_dssp             ST
T ss_pred             cC
Confidence            43

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.44  E-value=1.9e-13  Score=101.82  Aligned_cols=72  Identities=25%  Similarity=0.403  Sum_probs=62.7

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEe---CCCCceEEecccce
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL---DEDLKSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~---~~~~~~~l~~fg~~   78 (142)
                      +.|+|+||+...        ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||++   +.++.++++|||++
T Consensus        77 ~~~lvme~~g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~g---IvHrDIKP~NILl~~~~~~~~vkL~DFGla  153 (483)
T 3sv0_A           77 YNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKS---FLHRDIKPDNFLMGLGRRANQVYIIDFGLA  153 (483)
T ss_dssp             EEEEEEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECCGGGTTCEEECCCTTC
T ss_pred             EEEEEEECCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccCcceEEEecCCCCCeEEEEeCCcc
Confidence            568999998331        456999999999999999999999998   9999999999999   47789999999999


Q ss_pred             eeeecC
Q 043694           79 RIFVKD   84 (142)
Q Consensus        79 ~~~~~~   84 (142)
                      ..+...
T Consensus       154 ~~~~~~  159 (483)
T 3sv0_A          154 KKYRDT  159 (483)
T ss_dssp             EECBCT
T ss_pred             eeccCC
Confidence            876543

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.44  E-value=1.3e-13  Score=104.01  Aligned_cols=72  Identities=31%  Similarity=0.349  Sum_probs=64.3

Q ss_pred             hhheeeeeCCCcc------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccc
Q 043694           10 YLYLIFDVDPIRR------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      .+|+|+||++++.            ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||+
T Consensus       259 ~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~g---IvHrDLKP~NILl~~~g~vkL~DFGl  335 (543)
T 3c4z_A          259 DLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRN---IIYRDLKPENVLLDDDGNVRISDLGL  335 (543)
T ss_dssp             EEEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCTT
T ss_pred             EEEEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcC---CcccCCChHHEEEeCCCCEEEeecce
Confidence            4789999987632            35999999999999999999999998   99999999999999999999999999


Q ss_pred             eeeeecC
Q 043694           78 ARIFVKD   84 (142)
Q Consensus        78 ~~~~~~~   84 (142)
                      +..+...
T Consensus       336 a~~~~~~  342 (543)
T 3c4z_A          336 AVELKAG  342 (543)
T ss_dssp             CEECCTT
T ss_pred             eeeccCC
Confidence            9876543

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.44  E-value=2.1e-13  Score=95.36  Aligned_cols=71  Identities=23%  Similarity=0.334  Sum_probs=63.1

Q ss_pred             hhhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            9 LYLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ...|+|+||+.++         ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++..++.|||.+.
T Consensus        81 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~---i~H~dlkp~NIl~~~~~~~kl~dfg~~~  157 (305)
T 2wtk_C           81 QKMYMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQG---IVHKDIKPGNLLLTTGGTLKISALGVAE  157 (305)
T ss_dssp             -CEEEEEECCSEEHHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             CeEEEEehhccCCHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCcccEEEcCCCcEEeecccccc
Confidence            3578999998753         356999999999999999999999998   9999999999999999999999999987


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      ...
T Consensus       158 ~~~  160 (305)
T 2wtk_C          158 ALH  160 (305)
T ss_dssp             ECC
T ss_pred             ccC
Confidence            654

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.44  E-value=5.3e-14  Score=107.51  Aligned_cols=70  Identities=29%  Similarity=0.474  Sum_probs=62.8

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||+.++         ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||+++.
T Consensus       409 ~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~---iiHrDlkp~NILl~~~~~vkL~DFGla~~  485 (613)
T 2ozo_A          409 ALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKN---FVHRNLAARNVLLVNRHYAKISDFGLSKA  485 (613)
T ss_dssp             SEEEEEECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCCSTTTT
T ss_pred             CeEEEEEeCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC---EEcCcCCHHHEEEcCCCcEEEeeccCccc
Confidence            368999998764         245999999999999999999999998   99999999999999999999999999876


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      +.
T Consensus       486 ~~  487 (613)
T 2ozo_A          486 LG  487 (613)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.43  E-value=2.3e-13  Score=100.40  Aligned_cols=71  Identities=32%  Similarity=0.417  Sum_probs=62.4

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC---CCCceEEecccce
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD---EDLKSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~---~~~~~~l~~fg~~   78 (142)
                      ..|+|+||+.++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++   .++.++++|||++
T Consensus        84 ~~~lv~E~~~gg~L~~~i~~~~~~~e~~~~~i~~qil~aL~~lH~~g---ivHrDlKp~NIll~~~~~~~~vkL~DFG~a  160 (444)
T 3soa_A           84 HHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMG---VVHRNLKPENLLLASKLKGAAVKLADFGLA  160 (444)
T ss_dssp             EEEEEECCCBCCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSSTTEEESBSSTTCCEEECCCSSC
T ss_pred             EEEEEEEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEEeccCCCCcEEEccCcee
Confidence            4789999987743        45999999999999999999999998   99999999999998   4578999999998


Q ss_pred             eeeec
Q 043694           79 RIFVK   83 (142)
Q Consensus        79 ~~~~~   83 (142)
                      .....
T Consensus       161 ~~~~~  165 (444)
T 3soa_A          161 IEVEG  165 (444)
T ss_dssp             BCCCT
T ss_pred             EEecC
Confidence            76653

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.43  E-value=2.5e-13  Score=96.72  Aligned_cols=71  Identities=27%  Similarity=0.424  Sum_probs=63.0

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.|+|+||+..+         ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+..
T Consensus       103 ~~~lv~e~~~~g~~l~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~  179 (335)
T 3dls_A          103 FFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRLKD---IIHRDIKDENIVIAEDFTIKLIDFGSAAY  179 (335)
T ss_dssp             EEEEEEECCTTSCBHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEEEEEEeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eEEeccCHHHEEEcCCCcEEEeecccceE
Confidence            478899987553         246999999999999999999999998   99999999999999999999999999887


Q ss_pred             eec
Q 043694           81 FVK   83 (142)
Q Consensus        81 ~~~   83 (142)
                      ...
T Consensus       180 ~~~  182 (335)
T 3dls_A          180 LER  182 (335)
T ss_dssp             CCT
T ss_pred             CCC
Confidence            654

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.43  E-value=4.3e-13  Score=96.72  Aligned_cols=56  Identities=34%  Similarity=0.433  Sum_probs=48.7

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhcc-CCCceEecccCCCcEEeCCCC
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEY-SKLIVIHQDLKASNILLDEDL   68 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~-~~~~i~h~~l~~~nil~~~~~   68 (142)
                      +.|+|+||+.++         ...+++..+..++.|++.|+.|||+. +   ++|+|+++.||+++.++
T Consensus       119 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~g---ivHrDikp~NIll~~~~  184 (397)
T 1wak_A          119 HICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCR---IIHTDIKPENILLSVNE  184 (397)
T ss_dssp             EEEEEECCCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTC---EECCCCSGGGEEECCCH
T ss_pred             eEEEEEeccCccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHeeEeccc
Confidence            578999997542         24599999999999999999999998 8   99999999999998654

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.43  E-value=1.1e-13  Score=98.26  Aligned_cols=71  Identities=32%  Similarity=0.489  Sum_probs=62.4

Q ss_pred             hhheeeeeCCCcc------------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC
Q 043694           10 YLYLIFDVDPIRR------------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD   65 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~   65 (142)
                      ..|+|+||+++++                        ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++
T Consensus       115 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~  191 (334)
T 2pvf_A          115 PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNVLVT  191 (334)
T ss_dssp             CCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEC
T ss_pred             ceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCccceEEEc
Confidence            5789999987532                        23899999999999999999999998   99999999999999


Q ss_pred             CCCceEEecccceeeeec
Q 043694           66 EDLKSKISDFGLARIFVK   83 (142)
Q Consensus        66 ~~~~~~l~~fg~~~~~~~   83 (142)
                      .++.++++|||++.....
T Consensus       192 ~~~~~kL~Dfg~~~~~~~  209 (334)
T 2pvf_A          192 ENNVMKIADFGLARDINN  209 (334)
T ss_dssp             TTCCEEECCCTTCEECTT
T ss_pred             CCCCEEEccccccccccc
Confidence            999999999999876543

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.43  E-value=3.5e-13  Score=102.26  Aligned_cols=71  Identities=28%  Similarity=0.291  Sum_probs=63.9

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ++|+|+||++++.          ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++.
T Consensus       258 ~l~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~g---IvHrDLKPeNILld~~g~vKL~DFGla~  334 (576)
T 2acx_A          258 ALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRER---IVYRDLKPENILLDDHGHIRISDLGLAV  334 (576)
T ss_dssp             EEEEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             EEEEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EeccCCchheEEEeCCCCeEEEecccce
Confidence            5799999987643          23999999999999999999999998   9999999999999999999999999998


Q ss_pred             eeec
Q 043694           80 IFVK   83 (142)
Q Consensus        80 ~~~~   83 (142)
                      ....
T Consensus       335 ~~~~  338 (576)
T 2acx_A          335 HVPE  338 (576)
T ss_dssp             ECCT
T ss_pred             eccc
Confidence            7654

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.43  E-value=3.4e-13  Score=97.48  Aligned_cols=72  Identities=22%  Similarity=0.389  Sum_probs=63.7

Q ss_pred             hhhheeeeeCCCc-----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC-CCCceEEeccc
Q 043694            9 LYLYLIFDVDPIR-----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD-EDLKSKISDFG   76 (142)
Q Consensus         9 ~~~~lv~e~~~~~-----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~-~~~~~~l~~fg   76 (142)
                      .++|+|+||++++           ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++ .++.++++|||
T Consensus       111 ~~~~lv~e~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~g---i~H~Dikp~Nil~~~~~~~~kl~Dfg  187 (383)
T 3eb0_A          111 KYLNVIMEYVPDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSLG---ICHRDIKPQNLLVNSKDNTLKLCDFG  187 (383)
T ss_dssp             CEEEEEECCCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEEETTTTEEEECCCT
T ss_pred             eEEEEEEecCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCc---CccCccCHHHEEEcCCCCcEEEEECC
Confidence            4688999998753           356999999999999999999999998   99999999999997 57899999999


Q ss_pred             ceeeeec
Q 043694           77 LARIFVK   83 (142)
Q Consensus        77 ~~~~~~~   83 (142)
                      .+..+..
T Consensus       188 ~a~~~~~  194 (383)
T 3eb0_A          188 SAKKLIP  194 (383)
T ss_dssp             TCEECCT
T ss_pred             CCcccCC
Confidence            9987643

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.43  E-value=1e-13  Score=98.37  Aligned_cols=70  Identities=29%  Similarity=0.487  Sum_probs=57.2

Q ss_pred             hheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           11 LYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        11 ~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+++++++.++         ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        91 ~~~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~  167 (327)
T 3lzb_A           91 VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL  167 (327)
T ss_dssp             EEEEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEETTEEEECCTTC----
T ss_pred             ceEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCC---CcCCCCCHHHEEEcCCCCEEEccCcceeEc
Confidence            45677776653         345899999999999999999999998   999999999999999999999999998765


Q ss_pred             ec
Q 043694           82 VK   83 (142)
Q Consensus        82 ~~   83 (142)
                      ..
T Consensus       168 ~~  169 (327)
T 3lzb_A          168 GA  169 (327)
T ss_dssp             --
T ss_pred             cC
Confidence            43

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.43  E-value=1.3e-13  Score=102.26  Aligned_cols=70  Identities=33%  Similarity=0.479  Sum_probs=59.8

Q ss_pred             hheeeeeCCCcc-----cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeeec
Q 043694           11 LYLIFDVDPIRR-----FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVK   83 (142)
Q Consensus        11 ~~lv~e~~~~~~-----~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~~   83 (142)
                      .|+|+||++++.     ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||+++....
T Consensus       142 ~~lv~E~~~~~l~~~~~~~l~~~~~~~~~~qil~aL~~lH~~~---iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~  216 (464)
T 3ttj_A          142 VYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGT  216 (464)
T ss_dssp             EEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCCCC-----
T ss_pred             EEEEEeCCCCCHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChHhEEEeCCCCEEEEEEEeeeecCC
Confidence            589999987642     34899999999999999999999998   99999999999999999999999999876543

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.43  E-value=1e-13  Score=97.50  Aligned_cols=70  Identities=26%  Similarity=0.414  Sum_probs=59.8

Q ss_pred             hheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           11 LYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        11 ~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .|+|+||++++        ...+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.+++.|||++..+.
T Consensus        91 ~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~  167 (311)
T 3ork_A           91 PYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVKVMDFGIARAIA  167 (311)
T ss_dssp             EEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEETTSCEEECCCSCC----
T ss_pred             cEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---CCcCCCCHHHEEEcCCCCEEEeeccCccccc
Confidence            48999998753        345999999999999999999999998   9999999999999999999999999987654


Q ss_pred             c
Q 043694           83 K   83 (142)
Q Consensus        83 ~   83 (142)
                      .
T Consensus       168 ~  168 (311)
T 3ork_A          168 D  168 (311)
T ss_dssp             -
T ss_pred             c
Confidence            3

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.43  E-value=7.1e-13  Score=93.98  Aligned_cols=72  Identities=26%  Similarity=0.379  Sum_probs=63.4

Q ss_pred             hhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhh--------ccCCCceEecccCCCcEEeCCCCceEEec
Q 043694           10 YLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQ--------EYSKLIVIHQDLKASNILLDEDLKSKISD   74 (142)
Q Consensus        10 ~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh--------~~~~~~i~h~~l~~~nil~~~~~~~~l~~   74 (142)
                      ..|+|+||+++++       ..+++..+..++.+++.|+.|||        +.+   ++|+|+++.||+++.++.++++|
T Consensus       114 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~---ivH~Dlkp~NIll~~~~~~kL~D  190 (342)
T 1b6c_B          114 QLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPA---IAHRDLKSKNILVKKNGTCCIAD  190 (342)
T ss_dssp             CEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCE---EECSCCSGGGEEECTTSCEEECC
T ss_pred             eeEEEEeecCCCcHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCC---eeeCCCCHHHEEECCCCCEEEEE
Confidence            5789999987643       45899999999999999999999        666   99999999999999999999999


Q ss_pred             ccceeeeecC
Q 043694           75 FGLARIFVKD   84 (142)
Q Consensus        75 fg~~~~~~~~   84 (142)
                      ||++......
T Consensus       191 fg~~~~~~~~  200 (342)
T 1b6c_B          191 LGLAVRHDSA  200 (342)
T ss_dssp             CTTCEEEETT
T ss_pred             CCCceecccc
Confidence            9998776543

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.43  E-value=5e-13  Score=94.99  Aligned_cols=70  Identities=23%  Similarity=0.322  Sum_probs=60.4

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEe----------------
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL----------------   64 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~----------------   64 (142)
                      ..|+|+||+.++         ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||++                
T Consensus        96 ~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~---ivH~Dlkp~NIll~~~~~~~~~~~~~~~~  172 (355)
T 2eu9_A           96 HMCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQ---LTHTDLKPENILFVNSEFETLYNEHKSCE  172 (355)
T ss_dssp             EEEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEESCCCEEEEECCC-CCC
T ss_pred             eEEEEEeccCCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEeccccccccccccccc
Confidence            468899997542         245999999999999999999999998   9999999999999                


Q ss_pred             ---CCCCceEEecccceeeee
Q 043694           65 ---DEDLKSKISDFGLARIFV   82 (142)
Q Consensus        65 ---~~~~~~~l~~fg~~~~~~   82 (142)
                         ..+..++++|||.+....
T Consensus       173 ~~~~~~~~~kl~Dfg~~~~~~  193 (355)
T 2eu9_A          173 EKSVKNTSIRVADFGSATFDH  193 (355)
T ss_dssp             EEEESCCCEEECCCTTCEETT
T ss_pred             ccccCCCcEEEeecCcccccc
Confidence               457889999999987643

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.43  E-value=3.6e-13  Score=100.19  Aligned_cols=71  Identities=31%  Similarity=0.510  Sum_probs=63.9

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||++++        ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        90 ~~~lv~E~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDLkp~NIll~~~~~vkL~DFG~a~~~  166 (476)
T 2y94_A           90 DIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMM  166 (476)
T ss_dssp             EEEEEEECCSSEEHHHHTTSSSSCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCSGGGEEECTTCCEEECCCSSCEEC
T ss_pred             EEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---CCcccccHHHEEEecCCCeEEEeccchhhc
Confidence            478999998763        356999999999999999999999998   999999999999999999999999998876


Q ss_pred             ec
Q 043694           82 VK   83 (142)
Q Consensus        82 ~~   83 (142)
                      ..
T Consensus       167 ~~  168 (476)
T 2y94_A          167 SD  168 (476)
T ss_dssp             CT
T ss_pred             cc
Confidence            54

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.43  E-value=2.1e-13  Score=96.64  Aligned_cols=71  Identities=23%  Similarity=0.370  Sum_probs=60.9

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC---ceEEecccce
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL---KSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~---~~~l~~fg~~   78 (142)
                      ..|+|+||++++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++   .++++|||++
T Consensus        80 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a  156 (325)
T 3kn6_A           80 HTFLVMELLNGGELFERIKKKKHFSETEASYIMRKLVSAVSHMHDVG---VVHRDLKPENLLFTDENDNLEIKIIDFGFA  156 (325)
T ss_dssp             EEEEEECCCCSCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEEC----CEEEECCCTTC
T ss_pred             EEEEEEEccCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---CeecCCCHHHEEEecCCCcccEEEeccccc
Confidence            4789999987643        45999999999999999999999998   99999999999997544   7999999998


Q ss_pred             eeeec
Q 043694           79 RIFVK   83 (142)
Q Consensus        79 ~~~~~   83 (142)
                      .....
T Consensus       157 ~~~~~  161 (325)
T 3kn6_A          157 RLKPP  161 (325)
T ss_dssp             EECCC
T ss_pred             eecCC
Confidence            76543

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.42  E-value=5.4e-13  Score=96.06  Aligned_cols=71  Identities=30%  Similarity=0.386  Sum_probs=62.6

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC----ceEEecccc
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL----KSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~----~~~l~~fg~   77 (142)
                      ..|+|+||++++        ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||++..++    .++++|||+
T Consensus        89 ~~~lv~e~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~~~~~~~vkl~DFG~  165 (361)
T 2yab_A           89 DVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKK---IAHFDLKPENIMLLDKNIPIPHIKLIDFGL  165 (361)
T ss_dssp             EEEEEEECCCSCBHHHHHTTCSCCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESCTTSSSCCEEECCCSS
T ss_pred             EEEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEeCCCCCccCEEEEecCC
Confidence            578999998764        346999999999999999999999998   99999999999997665    799999999


Q ss_pred             eeeeec
Q 043694           78 ARIFVK   83 (142)
Q Consensus        78 ~~~~~~   83 (142)
                      +.....
T Consensus       166 a~~~~~  171 (361)
T 2yab_A          166 AHEIED  171 (361)
T ss_dssp             CEECCT
T ss_pred             ceEcCC
Confidence            987654

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.42  E-value=6.6e-14  Score=103.40  Aligned_cols=70  Identities=30%  Similarity=0.563  Sum_probs=61.1

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ..|+|+||+++++          ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||+++
T Consensus       252 ~~~iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DfG~a~  328 (452)
T 1fmk_A          252 PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLAR  328 (452)
T ss_dssp             SCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCCTTC
T ss_pred             ceEEEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChhhEEECCCCCEEECCCccce
Confidence            4689999987642          34899999999999999999999998   9999999999999999999999999987


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      ...
T Consensus       329 ~~~  331 (452)
T 1fmk_A          329 LIE  331 (452)
T ss_dssp             ---
T ss_pred             ecC
Confidence            654

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.42  E-value=5.9e-13  Score=91.72  Aligned_cols=70  Identities=31%  Similarity=0.502  Sum_probs=62.4

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||++++        ...+++..+..++.+++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||.+...
T Consensus        79 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~  155 (276)
T 2yex_A           79 IQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVF  155 (276)
T ss_dssp             EEEEEEECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EEEEEEEecCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCChHHEEEccCCCEEEeeCCCcccc
Confidence            468999998653        245899999999999999999999998   999999999999999999999999998765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       156 ~  156 (276)
T 2yex_A          156 R  156 (276)
T ss_dssp             E
T ss_pred             C
Confidence            4

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.42  E-value=4e-13  Score=94.21  Aligned_cols=70  Identities=26%  Similarity=0.345  Sum_probs=63.2

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||++++        ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+...
T Consensus        76 ~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~  152 (311)
T 4agu_A           76 RLHLVFEYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHN---CIHRDVKPENILITKHSVIKLCDFGFARLL  152 (311)
T ss_dssp             EEEEEEECCSEEHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             eEEEEEEeCCCchHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCCChhhEEEcCCCCEEEeeCCCchhc
Confidence            468999998764        355999999999999999999999998   999999999999999999999999998765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       153 ~  153 (311)
T 4agu_A          153 T  153 (311)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.42  E-value=3.3e-13  Score=93.94  Aligned_cols=72  Identities=18%  Similarity=0.234  Sum_probs=61.3

Q ss_pred             hhheeeeeCCC--------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCc-----eEEeccc
Q 043694           10 YLYLIFDVDPI--------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLK-----SKISDFG   76 (142)
Q Consensus        10 ~~~lv~e~~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~-----~~l~~fg   76 (142)
                      ..|+++||+..        ....+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.     ++++|||
T Consensus        80 ~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg  156 (298)
T 1csn_A           80 HNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKS---LVYRDIKPDNFLIGRPNSKNANMIYVVDFG  156 (298)
T ss_dssp             EEEEEEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECCSSSTTTTCEEECCCT
T ss_pred             eeEEEEEecCCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEeccCCCCCCCeEEEEECc
Confidence            46899999832        1245999999999999999999999998   999999999999976654     9999999


Q ss_pred             ceeeeecC
Q 043694           77 LARIFVKD   84 (142)
Q Consensus        77 ~~~~~~~~   84 (142)
                      ++......
T Consensus       157 ~~~~~~~~  164 (298)
T 1csn_A          157 MVKFYRDP  164 (298)
T ss_dssp             TCEESBCT
T ss_pred             cccccccc
Confidence            99876543

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.42  E-value=9.3e-14  Score=96.25  Aligned_cols=70  Identities=24%  Similarity=0.452  Sum_probs=62.8

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||+.++         ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.+++.|||.+..
T Consensus        93 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~Nili~~~~~~kl~Dfg~~~~  169 (283)
T 3gen_A           93 PIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQ---FLHRDLAARNCLVNDQGVVKVSDFGLSRY  169 (283)
T ss_dssp             SEEEEECCCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCSGGGEEECTTSCEEECSTTGGGG
T ss_pred             CeEEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCccceEEEcCCCCEEEcccccccc
Confidence            468999998753         356999999999999999999999998   99999999999999999999999999876


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       170 ~~  171 (283)
T 3gen_A          170 VL  171 (283)
T ss_dssp             BC
T ss_pred             cc
Confidence            53

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.42  E-value=2.9e-13  Score=95.83  Aligned_cols=71  Identities=24%  Similarity=0.385  Sum_probs=62.9

Q ss_pred             hhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC--CCceEEecccce
Q 043694           10 YLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE--DLKSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~--~~~~~l~~fg~~   78 (142)
                      ..|+|+||++++.         ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.  ++.++++|||++
T Consensus        75 ~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~g---ivH~Dlkp~NIl~~~~~~~~~kl~Dfg~a  151 (321)
T 1tki_A           75 ELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHN---IGHFDIRPENIIYQTRRSSTIKIIEFGQA  151 (321)
T ss_dssp             EEEEEECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSCCCEEECCCTTC
T ss_pred             EEEEEEEeCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCcCCCCHHHEEEccCCCCCEEEEECCCC
Confidence            5789999987632         35999999999999999999999998   999999999999986  789999999999


Q ss_pred             eeeec
Q 043694           79 RIFVK   83 (142)
Q Consensus        79 ~~~~~   83 (142)
                      .....
T Consensus       152 ~~~~~  156 (321)
T 1tki_A          152 RQLKP  156 (321)
T ss_dssp             EECCT
T ss_pred             eECCC
Confidence            87654

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.42  E-value=2.6e-13  Score=93.33  Aligned_cols=74  Identities=31%  Similarity=0.435  Sum_probs=59.2

Q ss_pred             hhheeeeeCCCc-------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC--------CCceEEec
Q 043694           10 YLYLIFDVDPIR-------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE--------DLKSKISD   74 (142)
Q Consensus        10 ~~~lv~e~~~~~-------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~--------~~~~~l~~   74 (142)
                      ..|+|+||++++       ...+++..+..++.+++.|+.|||+.+..+++|+|+++.||+++.        ++.++++|
T Consensus        80 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~D  159 (271)
T 3dtc_A           80 NLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITD  159 (271)
T ss_dssp             -CEEEEECCTTEEHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECC
T ss_pred             ceEEEEEcCCCCCHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEcc
Confidence            478999998753       356999999999999999999999987556889999999999985        67799999


Q ss_pred             ccceeeeec
Q 043694           75 FGLARIFVK   83 (142)
Q Consensus        75 fg~~~~~~~   83 (142)
                      ||.+.....
T Consensus       160 fg~~~~~~~  168 (271)
T 3dtc_A          160 FGLAREWHR  168 (271)
T ss_dssp             CCC------
T ss_pred             CCccccccc
Confidence            999876543

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.42  E-value=2.5e-13  Score=95.81  Aligned_cols=71  Identities=35%  Similarity=0.551  Sum_probs=63.6

Q ss_pred             hhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ..|+|+||++++.       ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+....
T Consensus       109 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~i~~~l~~~l~~LH~~~---ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~  185 (318)
T 3lxp_A          109 SLQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQH---YIHRDLAARNVLLDNDRLVKIGDFGLAKAVP  185 (318)
T ss_dssp             EEEEEECCCTTCBHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCGGGCEECC
T ss_pred             eEEEEEecccCCcHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCchheEEEcCCCCEEECCcccccccc
Confidence            5689999987632       44899999999999999999999999   9999999999999999999999999998765


Q ss_pred             c
Q 043694           83 K   83 (142)
Q Consensus        83 ~   83 (142)
                      .
T Consensus       186 ~  186 (318)
T 3lxp_A          186 E  186 (318)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.42  E-value=1.4e-13  Score=97.56  Aligned_cols=70  Identities=30%  Similarity=0.381  Sum_probs=60.4

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||++++        ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus        95 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~  171 (327)
T 3a62_A           95 KLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKG---IIYRDLKPENIMLNHQGHVKLTDFGLCKES  171 (327)
T ss_dssp             CEEEEEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCTTTEEECTTSCEEECCCSCC---
T ss_pred             EEEEEEeCCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCC---EEcccCCHHHeEECCCCcEEEEeCCccccc
Confidence            578999998764        245899999999999999999999998   999999999999999999999999988754


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       172 ~  172 (327)
T 3a62_A          172 I  172 (327)
T ss_dssp             -
T ss_pred             c
Confidence            3

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.41  E-value=1.6e-13  Score=95.53  Aligned_cols=70  Identities=36%  Similarity=0.456  Sum_probs=56.6

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..++|+||++++         ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++..
T Consensus        93 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~---i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~  169 (289)
T 3og7_A           93 QLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATE  169 (289)
T ss_dssp             SCEEEEECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEEEECCCC----
T ss_pred             ccEEEEEecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCC---cccccCccceEEECCCCCEEEccceeccc
Confidence            367899997642         355999999999999999999999998   99999999999999999999999998875


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       170 ~~  171 (289)
T 3og7_A          170 KS  171 (289)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.41  E-value=4e-13  Score=98.67  Aligned_cols=71  Identities=25%  Similarity=0.270  Sum_probs=60.9

Q ss_pred             hhhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCc--eEEecccc
Q 043694            9 LYLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLK--SKISDFGL   77 (142)
Q Consensus         9 ~~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~--~~l~~fg~   77 (142)
                      ...|+++||+.++         ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.  ++++|||+
T Consensus       172 ~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlKp~NILl~~~~~~~vkL~DFG~  248 (429)
T 3kvw_A          172 NHICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNR---IIHCDLKPENILLKQQGRSGIKVIDFGS  248 (429)
T ss_dssp             TEEEEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHT---EECSCCSGGGEEESSTTSCCEEECCCTT
T ss_pred             CeEEEEEeccCCCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEEccCCCcceEEeeccc
Confidence            3568899987642         234899999999999999999999998   999999999999998776  99999999


Q ss_pred             eeeee
Q 043694           78 ARIFV   82 (142)
Q Consensus        78 ~~~~~   82 (142)
                      +....
T Consensus       249 a~~~~  253 (429)
T 3kvw_A          249 SCYEH  253 (429)
T ss_dssp             CEETT
T ss_pred             ceecC
Confidence            86543

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.41  E-value=4.3e-13  Score=95.84  Aligned_cols=72  Identities=28%  Similarity=0.482  Sum_probs=61.5

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC----CceEEecccc
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED----LKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~----~~~~l~~fg~   77 (142)
                      +.|+|+||++++        ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||++...    ..++++|||+
T Consensus        90 ~~~lv~E~~~gg~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~g---ivHrDlkp~NIl~~~~~~~~~~~kl~Dfg~  166 (342)
T 2qr7_A           90 YVYVVTELMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHAQG---VVHRDLKPSNILYVDESGNPESIRICDFGF  166 (342)
T ss_dssp             EEEEEECCCCSCBHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEESSSSCSGGGEEECCCTT
T ss_pred             EEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---cEeccCCHHHEEEecCCCCcCeEEEEECCC
Confidence            579999998764        345999999999999999999999998   9999999999998432    3599999999


Q ss_pred             eeeeecC
Q 043694           78 ARIFVKD   84 (142)
Q Consensus        78 ~~~~~~~   84 (142)
                      +......
T Consensus       167 a~~~~~~  173 (342)
T 2qr7_A          167 AKQLRAE  173 (342)
T ss_dssp             CEECBCT
T ss_pred             cccCcCC
Confidence            9876543

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.41  E-value=2.1e-13  Score=96.65  Aligned_cols=71  Identities=21%  Similarity=0.341  Sum_probs=62.0

Q ss_pred             hhheeeeeCCC--------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCc-----eEEeccc
Q 043694           10 YLYLIFDVDPI--------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLK-----SKISDFG   76 (142)
Q Consensus        10 ~~~lv~e~~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~-----~~l~~fg   76 (142)
                      +.|+|+||+..        ....+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.     ++++|||
T Consensus        79 ~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---iiHrDlkp~Nill~~~~~~~~~~~kl~DFg  155 (330)
T 2izr_A           79 YNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKN---LIYRDVKPENFLIGRPGNKTQQVIHIIDFA  155 (330)
T ss_dssp             EEEEEEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECCGGGTCTTSEEECCCT
T ss_pred             ccEEEEEeCCCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHeeeccCCCCCCceEEEEEcc
Confidence            46899999832        1356999999999999999999999998   999999999999987766     9999999


Q ss_pred             ceeeeec
Q 043694           77 LARIFVK   83 (142)
Q Consensus        77 ~~~~~~~   83 (142)
                      ++..+..
T Consensus       156 ~a~~~~~  162 (330)
T 2izr_A          156 LAKEYID  162 (330)
T ss_dssp             TCEESBC
T ss_pred             cceeeec
Confidence            9987654

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.41  E-value=2e-13  Score=97.38  Aligned_cols=72  Identities=22%  Similarity=0.377  Sum_probs=62.1

Q ss_pred             hhhheeeeeCCC-------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC--ceEEeccccee
Q 043694            9 LYLYLIFDVDPI-------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL--KSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~-------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~--~~~l~~fg~~~   79 (142)
                      .+.|+|+||+..       ....+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++  .++++|||+++
T Consensus       125 ~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~~~kL~Dfg~a~  201 (345)
T 2v62_A          125 SYRFMVMERLGIDLQKISGQNGTFKKSTVLQLGIRMLDVLEYIHENE---YVHGDIKAANLLLGYKNPDQVYLADYGLSY  201 (345)
T ss_dssp             EEEEEEEECEEEEHHHHCBGGGBCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEESSSTTSEEECCCTTCE
T ss_pred             cEEEEEEeccCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCcCHHHEEEccCCCCcEEEEeCCCce
Confidence            457899999721       1236999999999999999999999998   99999999999998776  99999999998


Q ss_pred             eeec
Q 043694           80 IFVK   83 (142)
Q Consensus        80 ~~~~   83 (142)
                      .+..
T Consensus       202 ~~~~  205 (345)
T 2v62_A          202 RYCP  205 (345)
T ss_dssp             ESSG
T ss_pred             eccc
Confidence            7643

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.41  E-value=2.3e-13  Score=98.32  Aligned_cols=70  Identities=27%  Similarity=0.373  Sum_probs=57.4

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||++++         ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||+++.
T Consensus       165 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~kL~DFG~a~~  241 (373)
T 3c1x_A          165 SPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKK---FVHRDLAARNCMLDEKFTVKVADFGLARD  241 (373)
T ss_dssp             CCEEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCC-----
T ss_pred             CeEEEEECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCC---EecCccchheEEECCCCCEEEeecccccc
Confidence            568999998763         245889999999999999999999998   99999999999999999999999999876


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       242 ~~  243 (373)
T 3c1x_A          242 MY  243 (373)
T ss_dssp             --
T ss_pred             cc
Confidence            54

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.41  E-value=4.9e-13  Score=93.51  Aligned_cols=72  Identities=21%  Similarity=0.374  Sum_probs=63.3

Q ss_pred             hhhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC---CCceEEecc
Q 043694            9 LYLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE---DLKSKISDF   75 (142)
Q Consensus         9 ~~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~---~~~~~l~~f   75 (142)
                      .+.|+|+||+++++          ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.   ++.++++||
T Consensus        88 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~~~kl~Df  164 (299)
T 3m2w_A           88 KCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDF  164 (299)
T ss_dssp             EEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESSSSTTCCEEECCC
T ss_pred             ceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEEecCCCCCcEEEecc
Confidence            35789999987632          35999999999999999999999999   999999999999987   788999999


Q ss_pred             cceeeeec
Q 043694           76 GLARIFVK   83 (142)
Q Consensus        76 g~~~~~~~   83 (142)
                      |++.....
T Consensus       165 g~a~~~~~  172 (299)
T 3m2w_A          165 GFAKETTG  172 (299)
T ss_dssp             TTCEECTT
T ss_pred             cccccccc
Confidence            99887654

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.41  E-value=5.2e-13  Score=94.42  Aligned_cols=71  Identities=34%  Similarity=0.510  Sum_probs=63.5

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||++++         ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.+++.|||.+..
T Consensus       100 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~  176 (327)
T 3lxl_A          100 SLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRR---CVHRDLAARNILVESEAHVKIADFGLAKL  176 (327)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCGGGCEE
T ss_pred             eEEEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCChhhEEECCCCCEEEccccccee
Confidence            478999998764         245999999999999999999999998   99999999999999999999999999987


Q ss_pred             eec
Q 043694           81 FVK   83 (142)
Q Consensus        81 ~~~   83 (142)
                      ...
T Consensus       177 ~~~  179 (327)
T 3lxl_A          177 LPL  179 (327)
T ss_dssp             CCT
T ss_pred             ccc
Confidence            643

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.41  E-value=3.6e-13  Score=93.93  Aligned_cols=71  Identities=28%  Similarity=0.382  Sum_probs=63.0

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+++||++++         ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.+++.|||.+..
T Consensus       101 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~a~~  177 (298)
T 3f66_A          101 SPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKK---FVHRDLAARNCMLDEKFTVKVADFGLARD  177 (298)
T ss_dssp             CCEEEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTCCEEECSCGGGCC
T ss_pred             ceEEEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCchheEEECCCCCEEECccccccc
Confidence            568899998763         345899999999999999999999998   99999999999999999999999999876


Q ss_pred             eec
Q 043694           81 FVK   83 (142)
Q Consensus        81 ~~~   83 (142)
                      ...
T Consensus       178 ~~~  180 (298)
T 3f66_A          178 MYD  180 (298)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            543

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.41  E-value=5.7e-14  Score=107.76  Aligned_cols=69  Identities=30%  Similarity=0.537  Sum_probs=62.3

Q ss_pred             hheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           11 LYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        11 ~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .|+|+||++++        ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||+++.+.
T Consensus       444 ~~lv~E~~~~g~L~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~---iiHrDLkp~NILl~~~~~~kL~DFGla~~~~  520 (635)
T 4fl3_A          444 WMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALR  520 (635)
T ss_dssp             EEEEEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCTTHHHHTT
T ss_pred             EEEEEEccCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHCC---EeCCCCChHhEEEeCCCCEEEEEcCCccccc
Confidence            57999998864        345999999999999999999999998   9999999999999999999999999987654

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.41  E-value=3.1e-13  Score=97.17  Aligned_cols=69  Identities=26%  Similarity=0.335  Sum_probs=59.0

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCc--eEEeccccee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLK--SKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~--~~l~~fg~~~   79 (142)
                      ..|+|+||++++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.+..  ++++|||+++
T Consensus        90 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~ql~~~L~~LH~~~---ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~  166 (361)
T 3uc3_A           90 HLAIIMEYASGGELYERICNAGRFSEDEARFFFQQLLSGVSYCHSMQ---ICHRDLKLENTLLDGSPAPRLKICDFGYSK  166 (361)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---CCSCCCCGGGEEECSSSSCCEEECCCCCC-
T ss_pred             EEEEEEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEcCCCCceEEEeecCccc
Confidence            4789999987643        45999999999999999999999998   999999999999986654  9999999887


Q ss_pred             ee
Q 043694           80 IF   81 (142)
Q Consensus        80 ~~   81 (142)
                      ..
T Consensus       167 ~~  168 (361)
T 3uc3_A          167 SS  168 (361)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.41  E-value=2.5e-13  Score=99.51  Aligned_cols=71  Identities=31%  Similarity=0.526  Sum_probs=61.6

Q ss_pred             hhheeeeeCCCc-----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC-CceEEecccc
Q 043694           10 YLYLIFDVDPIR-----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED-LKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~-----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~-~~~~l~~fg~   77 (142)
                      |+++|+||+++.           ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.+ ..+|++|||+
T Consensus       127 ~~~lv~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NILl~~~~~~~kl~DFG~  203 (420)
T 1j1b_A          127 YLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGS  203 (420)
T ss_dssp             EEEEEEECCCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCSGGGEEEETTTTEEEECCCTT
T ss_pred             eEEeehhcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChhhEEEeCCCCeEEeccchh
Confidence            577899998752           356899999999999999999999998   9999999999999854 5689999999


Q ss_pred             eeeeec
Q 043694           78 ARIFVK   83 (142)
Q Consensus        78 ~~~~~~   83 (142)
                      ++.+..
T Consensus       204 a~~~~~  209 (420)
T 1j1b_A          204 AKQLVR  209 (420)
T ss_dssp             CEECCT
T ss_pred             hhhccc
Confidence            987643

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.40  E-value=5.3e-13  Score=92.84  Aligned_cols=72  Identities=22%  Similarity=0.370  Sum_probs=62.2

Q ss_pred             hhheeeeeCCC--------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC---CCCceEEecccce
Q 043694           10 YLYLIFDVDPI--------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD---EDLKSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~---~~~~~~l~~fg~~   78 (142)
                      +.|+++||+..        ....+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++   .++.++++|||.+
T Consensus        79 ~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~  155 (296)
T 3uzp_A           79 YNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFGLA  155 (296)
T ss_dssp             EEEEEEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECCGGGTTCEEECCCTTC
T ss_pred             ceEEEEEecCCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHeEEecCCCCCeEEEeeCCCc
Confidence            46899999832        2356999999999999999999999998   99999999999994   7788999999998


Q ss_pred             eeeecC
Q 043694           79 RIFVKD   84 (142)
Q Consensus        79 ~~~~~~   84 (142)
                      ......
T Consensus       156 ~~~~~~  161 (296)
T 3uzp_A          156 KKYRDA  161 (296)
T ss_dssp             EECBCT
T ss_pred             cccccc
Confidence            876543

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.40  E-value=2e-13  Score=96.13  Aligned_cols=72  Identities=25%  Similarity=0.449  Sum_probs=58.1

Q ss_pred             hhheeeeeCCCcc-----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccce
Q 043694           10 YLYLIFDVDPIRR-----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~~-----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~   78 (142)
                      ..|+|+||+++++           ..+++..+..++.|++.|+.|||+.+ ++++|+|+++.||+++.++.++++|||++
T Consensus       108 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~-~~ivH~Dikp~NIll~~~~~~kL~Dfg~a  186 (309)
T 3p86_A          108 NLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRN-PPIVHRNLKSPNLLVDKKYTVKVCDFGLS  186 (309)
T ss_dssp             CCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSS-SCCCCTTCCGGGEEECTTCCEEECCCC--
T ss_pred             ceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCC-CCEECCCCChhhEEEeCCCcEEECCCCCC
Confidence            4789999987642           23999999999999999999999875 23899999999999999999999999998


Q ss_pred             eeee
Q 043694           79 RIFV   82 (142)
Q Consensus        79 ~~~~   82 (142)
                      ....
T Consensus       187 ~~~~  190 (309)
T 3p86_A          187 RLKA  190 (309)
T ss_dssp             ----
T ss_pred             cccc
Confidence            7543

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.40  E-value=8.9e-13  Score=94.05  Aligned_cols=70  Identities=33%  Similarity=0.584  Sum_probs=63.0

Q ss_pred             hhheeeeeCCC--------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPI--------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||+++        ....+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++..+
T Consensus        98 ~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~  174 (351)
T 3mi9_A           98 SIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNK---ILHRDMKAANVLITRDGVLKLADFGLARAF  174 (351)
T ss_dssp             EEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             eEEEEEeccCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCHHHEEEcCCCCEEEccchhcccc
Confidence            47899999874        2245999999999999999999999998   999999999999999999999999998765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       175 ~  175 (351)
T 3mi9_A          175 S  175 (351)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.40  E-value=2.3e-13  Score=95.86  Aligned_cols=70  Identities=27%  Similarity=0.432  Sum_probs=61.7

Q ss_pred             hhheeeeeCCCcc------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceE
Q 043694           10 YLYLIFDVDPIRR------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSK   71 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~   71 (142)
                      ..|+|+||++++.                  ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++
T Consensus       102 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~NIli~~~~~~k  178 (322)
T 1p4o_A          102 PTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANK---FVHRDLAARNCMVAEDFTVK  178 (322)
T ss_dssp             SCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCSGGGEEECTTCCEE
T ss_pred             ccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCC---CccCCCccceEEEcCCCeEE
Confidence            4789999987632                  34689999999999999999999998   99999999999999999999


Q ss_pred             Eecccceeeee
Q 043694           72 ISDFGLARIFV   82 (142)
Q Consensus        72 l~~fg~~~~~~   82 (142)
                      ++|||.+....
T Consensus       179 l~Dfg~~~~~~  189 (322)
T 1p4o_A          179 IGDFGMTRDIY  189 (322)
T ss_dssp             ECCTTCCCGGG
T ss_pred             ECcCccccccc
Confidence            99999987554

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.40  E-value=7.1e-13  Score=94.79  Aligned_cols=70  Identities=31%  Similarity=0.342  Sum_probs=59.8

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC--------------
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE--------------   66 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~--------------   66 (142)
                      +.|+|+||+...         ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.              
T Consensus       110 ~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~~~~~~~~~~~  186 (360)
T 3llt_A          110 HMCLIFEPLGPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMS---LTHTDLKPENILLDDPYFEKSLITVRRVT  186 (360)
T ss_dssp             EEEEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCTTCCEEEEEEECTT
T ss_pred             eeEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCcccEEEccccccccccchhccc
Confidence            478899987331         134899999999999999999999998   999999999999975              


Q ss_pred             -----------CCceEEecccceeeee
Q 043694           67 -----------DLKSKISDFGLARIFV   82 (142)
Q Consensus        67 -----------~~~~~l~~fg~~~~~~   82 (142)
                                 +..++++|||++....
T Consensus       187 ~~~~~~~~~~~~~~~kl~DFG~a~~~~  213 (360)
T 3llt_A          187 DGKKIQIYRTKSTGIKLIDFGCATFKS  213 (360)
T ss_dssp             TCCEEEEEEESCCCEEECCCTTCEETT
T ss_pred             ccccccccccCCCCEEEEeccCceecC
Confidence                       6789999999987643

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.40  E-value=1.4e-13  Score=95.47  Aligned_cols=70  Identities=26%  Similarity=0.353  Sum_probs=57.3

Q ss_pred             hhheeeeeCCCc-----------ccccCHHHHHHHHHHHHHHhhhhhcc-CCCceEecccCCCcEEeCCCCceEEecccc
Q 043694           10 YLYLIFDVDPIR-----------RFILDWKTCIHIIQGITQGLLYLQEY-SKLIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~-----------~~~l~~~~~~~~~~~i~~~l~~lh~~-~~~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      ..|+|+||++++           ...+++..+..++.|++.|+.|||+. +   ++|+|+++.||+++.++.++++|||.
T Consensus        80 ~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~  156 (290)
T 3fme_A           80 DVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLS---VIHRDVKPSNVLINALGQVKMCDFGI  156 (290)
T ss_dssp             SEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSC---CCCCCCSGGGCEECTTCCEEBCCC--
T ss_pred             CEEEEEehhccchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCC---eecCCCCHHHEEECCCCCEEEeecCC
Confidence            478999998752           35699999999999999999999998 8   99999999999999999999999999


Q ss_pred             eeeee
Q 043694           78 ARIFV   82 (142)
Q Consensus        78 ~~~~~   82 (142)
                      +....
T Consensus       157 ~~~~~  161 (290)
T 3fme_A          157 SGYLV  161 (290)
T ss_dssp             -----
T ss_pred             ccccc
Confidence            87654

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.40  E-value=4.3e-13  Score=93.60  Aligned_cols=72  Identities=28%  Similarity=0.438  Sum_probs=63.7

Q ss_pred             hhhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            9 LYLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ...|+|+||+++++         ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+.
T Consensus        98 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~  174 (302)
T 4e5w_A           98 NGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQ---YVHRDLAARNVLVESEHQVKIGDFGLTK  174 (302)
T ss_dssp             CCEEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred             ceEEEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhcCC---cccCCCchheEEEcCCCCEEECcccccc
Confidence            34689999987632         45999999999999999999999998   9999999999999999999999999988


Q ss_pred             eeec
Q 043694           80 IFVK   83 (142)
Q Consensus        80 ~~~~   83 (142)
                      ....
T Consensus       175 ~~~~  178 (302)
T 4e5w_A          175 AIET  178 (302)
T ss_dssp             ECCT
T ss_pred             cccC
Confidence            7653

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.39  E-value=2.6e-13  Score=94.01  Aligned_cols=71  Identities=25%  Similarity=0.502  Sum_probs=56.3

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||++++         ...+++..+..++.+++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||++..
T Consensus        89 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~  165 (281)
T 1mp8_A           89 PVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRY  165 (281)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECC------
T ss_pred             ccEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---eecccccHHHEEECCCCCEEECccccccc
Confidence            468999998763         235999999999999999999999998   99999999999999999999999999876


Q ss_pred             eec
Q 043694           81 FVK   83 (142)
Q Consensus        81 ~~~   83 (142)
                      ...
T Consensus       166 ~~~  168 (281)
T 1mp8_A          166 MED  168 (281)
T ss_dssp             ---
T ss_pred             cCc
Confidence            543

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.39  E-value=5.2e-13  Score=94.57  Aligned_cols=71  Identities=31%  Similarity=0.472  Sum_probs=61.3

Q ss_pred             hhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC---CCceEEeccc
Q 043694           10 YLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE---DLKSKISDFG   76 (142)
Q Consensus        10 ~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~---~~~~~l~~fg   76 (142)
                      ..|+|+||+.++          ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.   ++.+++.|||
T Consensus       103 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~g---ivH~Dikp~NIl~~~~~~~~~~kL~Dfg  179 (327)
T 3lm5_A          103 EIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNN---IVHLDLKPQNILLSSIYPLGDIKIVDFG  179 (327)
T ss_dssp             EEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEESCBTTBCCEEECCGG
T ss_pred             eEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCC---eecCcCChHHEEEecCCCCCcEEEeeCc
Confidence            468999998763          255899999999999999999999998   999999999999987   6889999999


Q ss_pred             ceeeeec
Q 043694           77 LARIFVK   83 (142)
Q Consensus        77 ~~~~~~~   83 (142)
                      .+.....
T Consensus       180 ~a~~~~~  186 (327)
T 3lm5_A          180 MSRKIGH  186 (327)
T ss_dssp             GCEEC--
T ss_pred             cccccCC
Confidence            9887643

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.39  E-value=2.1e-12  Score=93.75  Aligned_cols=71  Identities=27%  Similarity=0.394  Sum_probs=61.9

Q ss_pred             hhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC--CCceEEecccce
Q 043694           10 YLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE--DLKSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~--~~~~~l~~fg~~   78 (142)
                      ..|+|+||++++.         ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.  ++.++++|||++
T Consensus       122 ~~~lv~E~~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~~~~~vkL~DFG~a  198 (387)
T 1kob_A          122 EMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHS---IVHLDIKPENIMCETKKASSVKIIDFGLA  198 (387)
T ss_dssp             EEEEEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSTTCCCEEECCCTTC
T ss_pred             EEEEEEEcCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecccchHHeEEecCCCCceEEEecccc
Confidence            5789999987632         36999999999999999999999998   999999999999974  467999999999


Q ss_pred             eeeec
Q 043694           79 RIFVK   83 (142)
Q Consensus        79 ~~~~~   83 (142)
                      .....
T Consensus       199 ~~~~~  203 (387)
T 1kob_A          199 TKLNP  203 (387)
T ss_dssp             EECCT
T ss_pred             eecCC
Confidence            87654

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.39  E-value=1.6e-12  Score=93.32  Aligned_cols=71  Identities=34%  Similarity=0.490  Sum_probs=63.2

Q ss_pred             hhheeeeeCCCc------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeeec
Q 043694           10 YLYLIFDVDPIR------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVK   83 (142)
Q Consensus        10 ~~~lv~e~~~~~------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~~   83 (142)
                      ..|+++||+.+.      ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+.....
T Consensus       104 ~~~iv~e~~~~~L~~~l~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~  180 (364)
T 3qyz_A          104 DVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADP  180 (364)
T ss_dssp             CEEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECCG
T ss_pred             eEEEEEcccCcCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCChHhEEECCCCCEEEEeCcceEecCC
Confidence            468999998752      345899999999999999999999998   99999999999999999999999999987653

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.39  E-value=1.7e-12  Score=91.45  Aligned_cols=71  Identities=25%  Similarity=0.424  Sum_probs=61.6

Q ss_pred             hhheeeeeCCCcc-----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEe----CCCCceEEec
Q 043694           10 YLYLIFDVDPIRR-----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL----DEDLKSKISD   74 (142)
Q Consensus        10 ~~~lv~e~~~~~~-----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~----~~~~~~~l~~   74 (142)
                      +.|+|+||++++.           ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||++    +.+..++++|
T Consensus        83 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~kL~D  159 (319)
T 4euu_A           83 HKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENG---IVHRNIKPGNIMRVIGEDGQSVYKLTD  159 (319)
T ss_dssp             CEEEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEECTTSCEEEEECC
T ss_pred             eEEEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHEEEeccCCCCceEEEcc
Confidence            5689999987532           22999999999999999999999998   9999999999998    6667899999


Q ss_pred             ccceeeeec
Q 043694           75 FGLARIFVK   83 (142)
Q Consensus        75 fg~~~~~~~   83 (142)
                      ||++.....
T Consensus       160 fg~a~~~~~  168 (319)
T 4euu_A          160 FGAARELED  168 (319)
T ss_dssp             CTTCEECCT
T ss_pred             CCCceecCC
Confidence            999987644

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.39  E-value=2.7e-13  Score=93.77  Aligned_cols=70  Identities=27%  Similarity=0.436  Sum_probs=58.8

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ..|+|+||+++++          ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.+++.|||.+.
T Consensus        89 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~l~Dfg~~~  165 (278)
T 1byg_A           89 GLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTK  165 (278)
T ss_dssp             CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTSCEEECCCCC--
T ss_pred             ceEEEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCC---ccccCCCcceEEEeCCCcEEEeeccccc
Confidence            5789999987632          23889999999999999999999998   9999999999999999999999999887


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      ...
T Consensus       166 ~~~  168 (278)
T 1byg_A          166 EAS  168 (278)
T ss_dssp             ---
T ss_pred             ccc
Confidence            544

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.39  E-value=2.2e-12  Score=89.07  Aligned_cols=70  Identities=33%  Similarity=0.587  Sum_probs=62.7

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.|+++||++++         ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.+++.|||.+..
T Consensus        85 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nili~~~~~~kl~dfg~~~~  161 (278)
T 3cok_A           85 YVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSHG---ILHRDLTLSNLLLTRNMNIKIADFGLATQ  161 (278)
T ss_dssp             EEEEEEECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSSCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             eEEEEEecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCCEEEEeecceee
Confidence            478999998653         256899999999999999999999998   99999999999999999999999999876


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       162 ~~  163 (278)
T 3cok_A          162 LK  163 (278)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.39  E-value=1e-13  Score=97.26  Aligned_cols=70  Identities=34%  Similarity=0.431  Sum_probs=61.4

Q ss_pred             hhheeeeeCCCcc------------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC
Q 043694           10 YLYLIFDVDPIRR------------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD   65 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~   65 (142)
                      +.|+++||+++++                        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++
T Consensus       106 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---i~H~dikp~Nil~~  182 (316)
T 2xir_A          106 PLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAARNILLS  182 (316)
T ss_dssp             CCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEC
T ss_pred             ceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCC---cccccCccceEEEC
Confidence            4788999987522                        12899999999999999999999998   99999999999999


Q ss_pred             CCCceEEecccceeeee
Q 043694           66 EDLKSKISDFGLARIFV   82 (142)
Q Consensus        66 ~~~~~~l~~fg~~~~~~   82 (142)
                      .++.++++|||.+....
T Consensus       183 ~~~~~kl~Dfg~~~~~~  199 (316)
T 2xir_A          183 EKNVVKICDFGLARDIY  199 (316)
T ss_dssp             GGGCEEECCCGGGSCTT
T ss_pred             CCCCEEECCCccccccc
Confidence            99999999999987654

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.39  E-value=1e-12  Score=90.82  Aligned_cols=71  Identities=30%  Similarity=0.459  Sum_probs=63.2

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ..|+++||++++.          ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+.
T Consensus        94 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  170 (284)
T 2a19_B           94 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKK---LINRDLKPSNIFLVDTKQVKIGDFGLVT  170 (284)
T ss_dssp             EEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred             eEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCCHHHEEEcCCCCEEECcchhhe
Confidence            4789999987632          46899999999999999999999998   9999999999999999999999999987


Q ss_pred             eeec
Q 043694           80 IFVK   83 (142)
Q Consensus        80 ~~~~   83 (142)
                      ....
T Consensus       171 ~~~~  174 (284)
T 2a19_B          171 SLKN  174 (284)
T ss_dssp             ESSC
T ss_pred             eccc
Confidence            6543

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.39  E-value=2.9e-13  Score=96.94  Aligned_cols=70  Identities=34%  Similarity=0.449  Sum_probs=62.6

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||+.++        ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus       128 ~~~lv~e~~~g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~  204 (348)
T 1u5q_A          128 TAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSASIM  204 (348)
T ss_dssp             EEEEEEECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEEETTTEEEECCCTTCBSS
T ss_pred             eEEEEEecCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEECCCCCEEEeeccCceec
Confidence            478999998652        356899999999999999999999998   999999999999999999999999998765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       205 ~  205 (348)
T 1u5q_A          205 A  205 (348)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.39  E-value=3.8e-13  Score=95.57  Aligned_cols=70  Identities=30%  Similarity=0.510  Sum_probs=59.7

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||++++         ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+..
T Consensus       120 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~  196 (333)
T 1mqb_A          120 PMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMN---YVHRDLAARNILVNSNLVCKVSDFGLSRV  196 (333)
T ss_dssp             SEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCCCC---
T ss_pred             CcEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChheEEECCCCcEEECCCCcchh
Confidence            578999998763         256999999999999999999999998   99999999999999999999999999876


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       197 ~~  198 (333)
T 1mqb_A          197 LE  198 (333)
T ss_dssp             --
T ss_pred             hc
Confidence            54

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.38  E-value=5e-13  Score=93.43  Aligned_cols=71  Identities=34%  Similarity=0.451  Sum_probs=63.5

Q ss_pred             hhheeeeeCCCc-------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIR-------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~-------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ..|+|+||++++       ...+++..+..++.+++.|+.|+|+.+   ++|+|+++.||+++.++.+++.|||.+....
T Consensus        94 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~  170 (303)
T 3a7i_A           94 KLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEK---KIHRDIKAANVLLSEHGEVKLADFGVAGQLT  170 (303)
T ss_dssp             EEEEEEECCTTEEHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECB
T ss_pred             eEEEEEEeCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCChheEEECCCCCEEEeecccceecC
Confidence            468999998763       356899999999999999999999998   9999999999999999999999999987765


Q ss_pred             c
Q 043694           83 K   83 (142)
Q Consensus        83 ~   83 (142)
                      .
T Consensus       171 ~  171 (303)
T 3a7i_A          171 D  171 (303)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.38  E-value=1.6e-12  Score=93.59  Aligned_cols=71  Identities=28%  Similarity=0.593  Sum_probs=63.8

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+|+||++++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.+++.|||++..+
T Consensus       174 ~~~lv~e~~~g~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~g---i~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~  250 (365)
T 2y7j_A          174 FMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLHANN---IVHRDLKPENILLDDNMQIRLSDFGFSCHL  250 (365)
T ss_dssp             EEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EEEEEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEEEecCccccc
Confidence            4789999987643        46999999999999999999999998   999999999999999999999999998776


Q ss_pred             ec
Q 043694           82 VK   83 (142)
Q Consensus        82 ~~   83 (142)
                      ..
T Consensus       251 ~~  252 (365)
T 2y7j_A          251 EP  252 (365)
T ss_dssp             CT
T ss_pred             CC
Confidence            54

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.38  E-value=5.3e-13  Score=95.32  Aligned_cols=71  Identities=24%  Similarity=0.348  Sum_probs=62.2

Q ss_pred             hhheeeeeCCCc-----------ccccCHHHHHHHHHHHHHHhhhhh--ccCCCceEecccCCCcEEeCC-CCceEEecc
Q 043694           10 YLYLIFDVDPIR-----------RFILDWKTCIHIIQGITQGLLYLQ--EYSKLIVIHQDLKASNILLDE-DLKSKISDF   75 (142)
Q Consensus        10 ~~~lv~e~~~~~-----------~~~l~~~~~~~~~~~i~~~l~~lh--~~~~~~i~h~~l~~~nil~~~-~~~~~l~~f   75 (142)
                      +.|+|+||++++           ...+++..+..++.+++.|+.|+|  +.+   ++|+|+++.||+++. ++.++++||
T Consensus       100 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~---ivH~Dlkp~NIll~~~~~~~kl~Df  176 (360)
T 3e3p_A          100 YLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVN---VCHRDIKPHNVLVNEADGTLKLCDF  176 (360)
T ss_dssp             EEEEEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTC---CBCSCCCGGGEEEETTTTEEEECCC
T ss_pred             eEEEEeecccccHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCC---eecCcCCHHHEEEeCCCCcEEEeeC
Confidence            478999998763           345889999999999999999999  887   999999999999986 889999999


Q ss_pred             cceeeeec
Q 043694           76 GLARIFVK   83 (142)
Q Consensus        76 g~~~~~~~   83 (142)
                      |++.....
T Consensus       177 g~a~~~~~  184 (360)
T 3e3p_A          177 GSAKKLSP  184 (360)
T ss_dssp             TTCBCCCT
T ss_pred             CCceecCC
Confidence            99886654

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.38  E-value=6.1e-13  Score=94.30  Aligned_cols=71  Identities=30%  Similarity=0.399  Sum_probs=62.4

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC----ceEEecccc
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL----KSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~----~~~l~~fg~   77 (142)
                      ..|+|+||++++        ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++    .++++|||+
T Consensus        88 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~  164 (326)
T 2y0a_A           88 DVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQ---IAHFDLKPENIMLLDRNVPKPRIKIIDFGL  164 (326)
T ss_dssp             EEEEEEECCCSCBHHHHHTTSSCCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESCSSSSSCCEEECCCTT
T ss_pred             EEEEEEEcCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHCC---eEcCCCCHHHEEEecCCCCCCCEEEEECCC
Confidence            478999998763        345899999999999999999999998   99999999999998766    799999999


Q ss_pred             eeeeec
Q 043694           78 ARIFVK   83 (142)
Q Consensus        78 ~~~~~~   83 (142)
                      +.....
T Consensus       165 a~~~~~  170 (326)
T 2y0a_A          165 AHKIDF  170 (326)
T ss_dssp             CEECCT
T ss_pred             CeECCC
Confidence            887643

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.38  E-value=4.6e-13  Score=96.33  Aligned_cols=71  Identities=30%  Similarity=0.471  Sum_probs=61.5

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC---CceEEecccce
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED---LKSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~---~~~~l~~fg~~   78 (142)
                      +.|+|+||++++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.+   ..++++|||++
T Consensus       102 ~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a  178 (362)
T 2bdw_A          102 FHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNG---IVHRNLKPENLLLASKAKGAAVKLADFGLA  178 (362)
T ss_dssp             EEEEEECCCCSCBHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred             EEEEEEecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCchHHEEEecCCCCCCEEEeecCcc
Confidence            4789999987643        45899999999999999999999998   9999999999999754   45999999998


Q ss_pred             eeeec
Q 043694           79 RIFVK   83 (142)
Q Consensus        79 ~~~~~   83 (142)
                      .....
T Consensus       179 ~~~~~  183 (362)
T 2bdw_A          179 IEVND  183 (362)
T ss_dssp             BCCTT
T ss_pred             eEecC
Confidence            76543

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.38  E-value=1.5e-12  Score=92.04  Aligned_cols=70  Identities=31%  Similarity=0.476  Sum_probs=61.8

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||+.++        ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+...
T Consensus        74 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~  150 (324)
T 3mtl_A           74 SLTLVFEYLDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQK---VLHRDLKPQNLLINERGELKLADFGLARAK  150 (324)
T ss_dssp             CEEEEEECCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT---EEESSCCGGGEEECTTCCEEECSSSEEECC
T ss_pred             EEEEEecccccCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCcCHHHEEECCCCCEEEccCcccccc
Confidence            478999998752        345899999999999999999999998   999999999999999999999999998754


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       151 ~  151 (324)
T 3mtl_A          151 S  151 (324)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.38  E-value=8.4e-14  Score=104.88  Aligned_cols=70  Identities=30%  Similarity=0.563  Sum_probs=62.5

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ..|+|+||+.++.          ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||+++
T Consensus       335 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~  411 (535)
T 2h8h_A          335 PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLAR  411 (535)
T ss_dssp             SCEEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCTTSTT
T ss_pred             cceEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCCHhhEEEcCCCcEEEcccccce
Confidence            4789999987632          34899999999999999999999998   9999999999999999999999999987


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      ...
T Consensus       412 ~~~  414 (535)
T 2h8h_A          412 LIE  414 (535)
T ss_dssp             TCC
T ss_pred             ecC
Confidence            654

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.38  E-value=1.6e-12  Score=91.70  Aligned_cols=70  Identities=21%  Similarity=0.324  Sum_probs=60.0

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC--------------
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE--------------   66 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~--------------   66 (142)
                      +.|+|+||+..+         ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.              
T Consensus        91 ~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~  167 (339)
T 1z57_A           91 HICIVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNK---LTHTDLKPENILFVQSDYTEAYNPKIKRD  167 (339)
T ss_dssp             EEEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESCCCEEEEEC----CE
T ss_pred             cEEEEEcCCCCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCC---CcCCCCCHHHEEEeccccccccCCccccc
Confidence            568999998431         235899999999999999999999998   999999999999986              


Q ss_pred             -----CCceEEecccceeeee
Q 043694           67 -----DLKSKISDFGLARIFV   82 (142)
Q Consensus        67 -----~~~~~l~~fg~~~~~~   82 (142)
                           +..++++|||.+....
T Consensus       168 ~~~~~~~~~kl~Dfg~~~~~~  188 (339)
T 1z57_A          168 ERTLINPDIKVVDFGSATYDD  188 (339)
T ss_dssp             EEEESCCCEEECCCSSCEETT
T ss_pred             cccccCCCceEeeCcccccCc
Confidence                 5679999999987643

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.38  E-value=1.3e-12  Score=92.33  Aligned_cols=71  Identities=23%  Similarity=0.351  Sum_probs=62.2

Q ss_pred             hhheeeeeCCCcc-----cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC-ceEEecccceeeeec
Q 043694           10 YLYLIFDVDPIRR-----FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL-KSKISDFGLARIFVK   83 (142)
Q Consensus        10 ~~~lv~e~~~~~~-----~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~-~~~l~~fg~~~~~~~   83 (142)
                      +.++++||+.++.     ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++ .++++|||++.....
T Consensus       107 ~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~  183 (330)
T 3nsz_A          107 TPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMG---IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHP  183 (330)
T ss_dssp             CEEEEEECCCCCCHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTTEEEECCCTTCEECCT
T ss_pred             ceEEEEeccCchhHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCC
Confidence            4689999987653     34899999999999999999999998   99999999999998665 899999999986543

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.38  E-value=7.4e-13  Score=92.24  Aligned_cols=70  Identities=34%  Similarity=0.543  Sum_probs=63.0

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+++||++++.        ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.+++.|||.+...
T Consensus        89 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~  165 (294)
T 2rku_A           89 FVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKV  165 (294)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChHhEEEcCCCCEEEEeccCceec
Confidence            4789999987542        45899999999999999999999998   999999999999999999999999998765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       166 ~  166 (294)
T 2rku_A          166 E  166 (294)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.38  E-value=1e-12  Score=94.63  Aligned_cols=69  Identities=32%  Similarity=0.490  Sum_probs=61.4

Q ss_pred             hheeeeeCCC------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           11 LYLIFDVDPI------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        11 ~~lv~e~~~~------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .|+|+||+..      ....+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||+++...
T Consensus       105 ~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  179 (367)
T 1cm8_A          105 FYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAG---IIHRDLKPGNLAVNEDCELKILDFGLARQAD  179 (367)
T ss_dssp             CEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             EEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCcCHHHEEEcCCCCEEEEeeecccccc
Confidence            5899999743      1245899999999999999999999998   9999999999999999999999999988754

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.38  E-value=6.9e-13  Score=94.25  Aligned_cols=70  Identities=34%  Similarity=0.543  Sum_probs=63.1

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+|+||+.++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.+++.|||.+...
T Consensus       115 ~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~  191 (335)
T 2owb_A          115 FVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKV  191 (335)
T ss_dssp             EEEEEECCCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             eEEEEEecCCCCCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---CEecCCCchhEEEcCCCCEEEeeccCceec
Confidence            4789999987642        45899999999999999999999998   999999999999999999999999998765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       192 ~  192 (335)
T 2owb_A          192 E  192 (335)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.38  E-value=2.2e-12  Score=89.12  Aligned_cols=72  Identities=19%  Similarity=0.267  Sum_probs=61.0

Q ss_pred             hhhheeeeeCCCcc------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC----------
Q 043694            9 LYLYLIFDVDPIRR------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE----------   66 (142)
Q Consensus         9 ~~~~lv~e~~~~~~------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~----------   66 (142)
                      ...|+|+||+++++            ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.          
T Consensus        84 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dikp~NIl~~~~~~~~~~~~~  160 (289)
T 1x8b_A           84 DHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMS---LVHMDIKPSNIFISRTSIPNAASEE  160 (289)
T ss_dssp             TEEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEC-----------
T ss_pred             CeEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCC---EeecCCCHHHEEEcCCCCCcccccc
Confidence            35789999987632            44899999999999999999999998   999999999999973          


Q ss_pred             ---------CCceEEecccceeeeec
Q 043694           67 ---------DLKSKISDFGLARIFVK   83 (142)
Q Consensus        67 ---------~~~~~l~~fg~~~~~~~   83 (142)
                               ...++++|||.+.....
T Consensus       161 ~~~~~~~~~~~~~kl~Dfg~~~~~~~  186 (289)
T 1x8b_A          161 GDEDDWASNKVMFKIGDLGHVTRISS  186 (289)
T ss_dssp             ---------CCCEEECCCTTCEETTC
T ss_pred             cccccccCCceEEEEcccccccccCC
Confidence                     34789999998876543

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.38  E-value=1.3e-12  Score=94.51  Aligned_cols=69  Identities=22%  Similarity=0.264  Sum_probs=61.9

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ..|+|+||++++.          ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+.
T Consensus       100 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~NIll~~~~~~kl~dfg~~~  176 (389)
T 3gni_B          100 ELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMG---YVHRSVKASHILISVDGKVYLSGLRSNL  176 (389)
T ss_dssp             EEEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCGGGCE
T ss_pred             EEEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEcccccce
Confidence            4789999987532          45899999999999999999999999   9999999999999999999999999876


Q ss_pred             ee
Q 043694           80 IF   81 (142)
Q Consensus        80 ~~   81 (142)
                      ..
T Consensus       177 ~~  178 (389)
T 3gni_B          177 SM  178 (389)
T ss_dssp             EC
T ss_pred             ee
Confidence            54

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.38  E-value=1.9e-13  Score=94.10  Aligned_cols=70  Identities=33%  Similarity=0.540  Sum_probs=62.4

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||++++         ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.+++.|||.+..
T Consensus        79 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~  155 (269)
T 4hcu_A           79 PICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRF  155 (269)
T ss_dssp             SEEEEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECGGGCEEECCTTGGGG
T ss_pred             ceEEEEEeCCCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhCC---eecCCcchheEEEcCCCCEEecccccccc
Confidence            468999998764         244899999999999999999999998   99999999999999999999999999875


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       156 ~~  157 (269)
T 4hcu_A          156 VL  157 (269)
T ss_dssp             BC
T ss_pred             cc
Confidence            54

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.37  E-value=8.3e-13  Score=91.85  Aligned_cols=69  Identities=33%  Similarity=0.509  Sum_probs=61.5

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||++++        ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+...
T Consensus        74 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~  150 (288)
T 1ob3_A           74 RLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRR---VLHRDLKPQNLLINREGELKIADFGLARAF  150 (288)
T ss_dssp             CEEEEEECCSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECCTTHHHHH
T ss_pred             eEEEEEEecCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCCEEEeECcccccc
Confidence            578999997652        356899999999999999999999998   999999999999999999999999987654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.37  E-value=1.4e-12  Score=100.73  Aligned_cols=122  Identities=17%  Similarity=0.231  Sum_probs=85.5

Q ss_pred             hheeeeeCCCcc------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeeecC
Q 043694           11 LYLIFDVDPIRR------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD   84 (142)
Q Consensus        11 ~~lv~e~~~~~~------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~~~   84 (142)
                      .|+|+||++++.      ..+++.++..++.|++.|+.|+|+.+   ++|+|+++.||+++.+ .++++|||++......
T Consensus       159 ~~lv~E~~~g~~L~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~g---iiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~~  234 (681)
T 2pzi_A          159 GYIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEILPALSYLHSIG---LVYNDLKPENIMLTEE-QLKLIDLGAVSRINSF  234 (681)
T ss_dssp             EEEEEECCCCEECC----CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECSS-CEEECCCTTCEETTCC
T ss_pred             eEEEEEeCCCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCC---CeecccChHHeEEeCC-cEEEEecccchhcccC
Confidence            599999987632      36999999999999999999999998   9999999999999875 8899999998765432


Q ss_pred             cccccccccccchh-------------hhhhhhcCCcceee-----------cCCCCCCCC-HHHHHHHHHHHHhccCcc
Q 043694           85 DLEANTNRIVGTQE-------------SYNLWKDGKGRKLM-----------DPSLDDTHS-SWKLLTCLQIALLCVQEN  139 (142)
Q Consensus        85 ~~~~~~~~~~g~~~-------------~~~~~~~~~~~~~~-----------d~~~~~~~~-~~~~~~~~~i~~~C~~~~  139 (142)
                      .      ...|+++             ..+.|+.|.+...+           ...+....+ ......+.++..+|++.|
T Consensus       235 ~------~~~gt~~y~aPE~~~~~~~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d  308 (681)
T 2pzi_A          235 G------YLYGTPGFQAPEIVRTGPTVATDIYTVGRTLAALTLDLPTRNGRYVDGLPEDDPVLKTYDSYGRLLRRAIDPD  308 (681)
T ss_dssp             S------CCCCCTTTSCTTHHHHCSCHHHHHHHHHHHHHHHHSCCCEETTEECSSCCTTCHHHHHCHHHHHHHHHHTCSS
T ss_pred             C------ccCCCccccCHHHHcCCCCCceehhhhHHHHHHHHhCCCCCcccccccccccccccccCHHHHHHHhhhccCC
Confidence            1      1222222             45666555322111           011111111 122367888999999999


Q ss_pred             CCC
Q 043694          140 SND  142 (142)
Q Consensus       140 p~~  142 (142)
                      |++
T Consensus       309 P~~  311 (681)
T 2pzi_A          309 PRQ  311 (681)
T ss_dssp             GGG
T ss_pred             hhh
Confidence            963

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.37  E-value=5.3e-13  Score=92.86  Aligned_cols=70  Identities=29%  Similarity=0.459  Sum_probs=62.1

Q ss_pred             hhhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            9 LYLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ...|+|+||++++         ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+.
T Consensus        88 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dlkp~Nil~~~~~~~kl~dfg~~~  164 (303)
T 1zy4_A           88 STLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHSQG---IIHRDLKPMNIFIDESRNVKIGDFGLAK  164 (303)
T ss_dssp             EEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECCCCCCS
T ss_pred             CceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHHhCC---eecccCCHHhEEEcCCCCEEEeeCcchh
Confidence            4578999998763         345888999999999999999999998   9999999999999999999999999876


Q ss_pred             ee
Q 043694           80 IF   81 (142)
Q Consensus        80 ~~   81 (142)
                      ..
T Consensus       165 ~~  166 (303)
T 1zy4_A          165 NV  166 (303)
T ss_dssp             CT
T ss_pred             hc
Confidence            54

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.37  E-value=7.4e-13  Score=91.99  Aligned_cols=70  Identities=30%  Similarity=0.486  Sum_probs=62.6

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||++++         ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+..
T Consensus        83 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~kl~Dfg~~~~  159 (287)
T 1u59_A           83 ALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKN---FVHRDLAARNVLLVNRHYAKISDFGLSKA  159 (287)
T ss_dssp             SEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred             CcEEEEEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHCC---EeeCCCchheEEEcCCCCEEECcccceee
Confidence            368899997753         345999999999999999999999998   99999999999999999999999999887


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       160 ~~  161 (287)
T 1u59_A          160 LG  161 (287)
T ss_dssp             CT
T ss_pred             ec
Confidence            64

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.37  E-value=7.2e-13  Score=91.56  Aligned_cols=71  Identities=32%  Similarity=0.581  Sum_probs=62.9

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ..|+++||+++++          ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+.
T Consensus        81 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~  157 (279)
T 1qpc_A           81 PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLAR  157 (279)
T ss_dssp             SCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CcEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHhhEEEcCCCCEEECCCcccc
Confidence            4689999986532          25999999999999999999999998   9999999999999999999999999988


Q ss_pred             eeec
Q 043694           80 IFVK   83 (142)
Q Consensus        80 ~~~~   83 (142)
                      ....
T Consensus       158 ~~~~  161 (279)
T 1qpc_A          158 LIED  161 (279)
T ss_dssp             ECSS
T ss_pred             cccC
Confidence            7643

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.37  E-value=1.2e-12  Score=94.44  Aligned_cols=72  Identities=28%  Similarity=0.406  Sum_probs=62.6

Q ss_pred             hhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEe--CCCCceEEecccce
Q 043694           10 YLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL--DEDLKSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~--~~~~~~~l~~fg~~   78 (142)
                      ..|+|+||++++.         ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||++  +.++.++++|||++
T Consensus       160 ~~~lv~E~~~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~~~kl~DFG~a  236 (373)
T 2x4f_A          160 DIVLVMEYVDGGELFDRIIDESYNLTELDTILFMKQICEGIRHMHQMY---ILHLDLKPENILCVNRDAKQIKIIDFGLA  236 (373)
T ss_dssp             EEEEEEECCTTCEEHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEEETTTTEEEECCCSSC
T ss_pred             EEEEEEeCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCCHHHEEEecCCCCcEEEEeCCCc
Confidence            4789999987642         35999999999999999999999998   9999999999998  55678999999999


Q ss_pred             eeeecC
Q 043694           79 RIFVKD   84 (142)
Q Consensus        79 ~~~~~~   84 (142)
                      ..+...
T Consensus       237 ~~~~~~  242 (373)
T 2x4f_A          237 RRYKPR  242 (373)
T ss_dssp             EECCTT
T ss_pred             eecCCc
Confidence            876543

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.37  E-value=6.7e-13  Score=92.39  Aligned_cols=68  Identities=31%  Similarity=0.398  Sum_probs=60.5

Q ss_pred             hheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           11 LYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        11 ~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .|++++|+.++         ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+...
T Consensus        98 ~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dikp~Nili~~~~~~kl~Dfg~~~~~  174 (298)
T 3pls_A           98 PHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQK---FVHRDLAARNCMLDESFTVKVADFGLARDI  174 (298)
T ss_dssp             CEEEECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTCCEEECCTTSSCTT
T ss_pred             cEEEEecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCcceEEEcCCCcEEeCcCCCcccc
Confidence            47888887653         355899999999999999999999998   999999999999999999999999998754

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.37  E-value=6.2e-13  Score=94.88  Aligned_cols=70  Identities=36%  Similarity=0.518  Sum_probs=61.9

Q ss_pred             hhheeeeeCCC--------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPI--------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||+++        ....+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++..+
T Consensus        86 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~  162 (346)
T 1ua2_A           86 NISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHW---ILHRDLKPNNLLLDENGVLKLADFGLAKSF  162 (346)
T ss_dssp             CCEEEEECCSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECCCGGGSTT
T ss_pred             ceEEEEEcCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEEcCCCCEEEEecccceec
Confidence            57889999765        2345899999999999999999999999   999999999999999999999999998765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       163 ~  163 (346)
T 1ua2_A          163 G  163 (346)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.37  E-value=1.4e-12  Score=91.93  Aligned_cols=70  Identities=31%  Similarity=0.452  Sum_probs=61.9

Q ss_pred             hhheeeeeCCCc-------------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccc
Q 043694           10 YLYLIFDVDPIR-------------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFG   76 (142)
Q Consensus        10 ~~~lv~e~~~~~-------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg   76 (142)
                      ..|+|+||++++             ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||
T Consensus        77 ~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg  153 (317)
T 2pmi_A           77 KLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENK---ILHRDLKPQNLLINKRGQLKLGDFG  153 (317)
T ss_dssp             EEEEEEECCCCBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCS
T ss_pred             eEEEEEEecCCCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCChHHeEEcCCCCEEECcCc
Confidence            578999998752             134899999999999999999999998   9999999999999999999999999


Q ss_pred             ceeeee
Q 043694           77 LARIFV   82 (142)
Q Consensus        77 ~~~~~~   82 (142)
                      .+....
T Consensus       154 ~~~~~~  159 (317)
T 2pmi_A          154 LARAFG  159 (317)
T ss_dssp             SCEETT
T ss_pred             cceecC
Confidence            987653

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.36  E-value=4.8e-13  Score=95.60  Aligned_cols=71  Identities=20%  Similarity=0.423  Sum_probs=62.9

Q ss_pred             hhhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC--ceEEeccc
Q 043694            9 LYLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL--KSKISDFG   76 (142)
Q Consensus         9 ~~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~--~~~l~~fg   76 (142)
                      .+.|+|+||+ ++          ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++  .++++|||
T Consensus       131 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dikp~NIl~~~~~~~~~kl~Dfg  206 (352)
T 2jii_A          131 KYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENE---YVHGNVTAENIFVDPEDQSQVTLAGYG  206 (352)
T ss_dssp             TEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCGGGEEEETTEEEEEEECCGG
T ss_pred             cEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCCHHHEEEcCCCCceEEEecCc
Confidence            4679999998 42          256999999999999999999999998   99999999999999887  89999999


Q ss_pred             ceeeeec
Q 043694           77 LARIFVK   83 (142)
Q Consensus        77 ~~~~~~~   83 (142)
                      ++..+..
T Consensus       207 ~a~~~~~  213 (352)
T 2jii_A          207 FAFRYCP  213 (352)
T ss_dssp             GCBCSSG
T ss_pred             ceeeccC
Confidence            9976543

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.36  E-value=5.7e-13  Score=94.14  Aligned_cols=70  Identities=27%  Similarity=0.384  Sum_probs=61.6

Q ss_pred             hhheeeeeCCCc------------ccccCHHHHHHHHHHHHHHhhhhhcc-CCCceEecccCCCcEEeCCCCceEEeccc
Q 043694           10 YLYLIFDVDPIR------------RFILDWKTCIHIIQGITQGLLYLQEY-SKLIVIHQDLKASNILLDEDLKSKISDFG   76 (142)
Q Consensus        10 ~~~lv~e~~~~~------------~~~l~~~~~~~~~~~i~~~l~~lh~~-~~~~i~h~~l~~~nil~~~~~~~~l~~fg   76 (142)
                      ..|+|+||++++            ...+++..+..++.+++.|+.|||+. +   ++|+|+++.||+++.++.++++|||
T Consensus        95 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~---ivH~dlkp~NIll~~~~~~kl~Dfg  171 (327)
T 3aln_A           95 DCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLK---IIHRDIKPSNILLDRSGNIKLCDFG  171 (327)
T ss_dssp             EEEEEECCCSEEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHS---CCCSCCCGGGEEEETTTEEEECCCS
T ss_pred             ceEEEEeecCCChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCC---EeECCCCHHHEEEcCCCCEEEccCC
Confidence            467899998763            46689999999999999999999998 8   9999999999999999999999999


Q ss_pred             ceeeee
Q 043694           77 LARIFV   82 (142)
Q Consensus        77 ~~~~~~   82 (142)
                      ++....
T Consensus       172 ~~~~~~  177 (327)
T 3aln_A          172 ISGQLV  177 (327)
T ss_dssp             SSCC--
T ss_pred             Cceecc
Confidence            887653

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.36  E-value=3.8e-12  Score=87.86  Aligned_cols=71  Identities=27%  Similarity=0.447  Sum_probs=62.5

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEe---CCCCceEEecccce
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL---DEDLKSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~---~~~~~~~l~~fg~~   78 (142)
                      ..|+|+||++++.        ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||++   +.++.+++.|||.+
T Consensus        80 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~  156 (277)
T 3f3z_A           80 DIYLVMELCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLN---VAHRDLKPENFLFLTDSPDSPLKLIDFGLA  156 (277)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESSSSTTCCEEECCCTTC
T ss_pred             eEEEEEeccCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCCHHHEEEecCCCCCcEEEEecccc
Confidence            4689999987643        45899999999999999999999998   9999999999999   67789999999998


Q ss_pred             eeeec
Q 043694           79 RIFVK   83 (142)
Q Consensus        79 ~~~~~   83 (142)
                      .....
T Consensus       157 ~~~~~  161 (277)
T 3f3z_A          157 ARFKP  161 (277)
T ss_dssp             EECCT
T ss_pred             eeccC
Confidence            76543

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.36  E-value=7.2e-13  Score=92.21  Aligned_cols=71  Identities=30%  Similarity=0.511  Sum_probs=62.9

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||++++        ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+...
T Consensus        91 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~  167 (291)
T 1xbb_A           91 SWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKAL  167 (291)
T ss_dssp             SEEEEEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred             CcEEEEEeCCCCCHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHhCC---eEcCCCCcceEEEeCCCcEEEccCCcceee
Confidence            467899998753        245999999999999999999999998   999999999999999999999999998776


Q ss_pred             ec
Q 043694           82 VK   83 (142)
Q Consensus        82 ~~   83 (142)
                      ..
T Consensus       168 ~~  169 (291)
T 1xbb_A          168 RA  169 (291)
T ss_dssp             CT
T ss_pred             cc
Confidence            43

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.36  E-value=5.8e-13  Score=94.37  Aligned_cols=70  Identities=29%  Similarity=0.487  Sum_probs=60.4

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||++++        ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+...
T Consensus        98 ~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~  174 (331)
T 4aaa_A           98 RWYLVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHN---IIHRDIKPENILVSQSGVVKLCDFGFARTL  174 (331)
T ss_dssp             EEEEEEECCSEEHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCTTC---
T ss_pred             EEEEEEecCCcchHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCC---EEccCcChheEEEcCCCcEEEEeCCCceee
Confidence            468999998753        355999999999999999999999998   999999999999999999999999998765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       175 ~  175 (331)
T 4aaa_A          175 A  175 (331)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.35  E-value=5.1e-13  Score=92.63  Aligned_cols=70  Identities=29%  Similarity=0.462  Sum_probs=62.3

Q ss_pred             hhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ..|+|+||++++          ...+++..+..++.+++.|+.|+|+.+   ++|+|+++.||+++.++.+++.|||.+.
T Consensus        83 ~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~~l~Dfg~~~  159 (288)
T 3kfa_A           83 PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSR  159 (288)
T ss_dssp             SEEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHT---CCCSCCSGGGEEECGGGCEEECCCCGGG
T ss_pred             CEEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCC---ccCCCCCcceEEEcCCCCEEEccCccce
Confidence            468999998752          345999999999999999999999999   9999999999999999999999999887


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      ...
T Consensus       160 ~~~  162 (288)
T 3kfa_A          160 LMT  162 (288)
T ss_dssp             TSC
T ss_pred             ecc
Confidence            654

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.35  E-value=1.6e-12  Score=90.13  Aligned_cols=70  Identities=24%  Similarity=0.520  Sum_probs=59.2

Q ss_pred             hheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCc-----eEEeccc
Q 043694           11 LYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLK-----SKISDFG   76 (142)
Q Consensus        11 ~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~-----~~l~~fg   76 (142)
                      .++|+||++++         ...+++..+..++.+++.|+.|||+.+ ++++|+|+++.||+++.++.     +++.|||
T Consensus        96 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~-~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg  174 (287)
T 4f0f_A           96 PRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQN-PPIVHRDLRSPNIFLQSLDENAPVCAKVADFG  174 (287)
T ss_dssp             TEEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTSS-SCCBCSCCSGGGEEESCCCTTCSCCEEECCCT
T ss_pred             CeEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhCC-CCeecCCCCcceEEEeccCCCCceeEEeCCCC
Confidence            47899998753         346999999999999999999999875 23899999999999987665     8999999


Q ss_pred             ceeee
Q 043694           77 LARIF   81 (142)
Q Consensus        77 ~~~~~   81 (142)
                      ++...
T Consensus       175 ~~~~~  179 (287)
T 4f0f_A          175 LSQQS  179 (287)
T ss_dssp             TCBCC
T ss_pred             ccccc
Confidence            88654

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.35  E-value=3.8e-12  Score=89.84  Aligned_cols=71  Identities=30%  Similarity=0.386  Sum_probs=62.3

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC----ceEEecccc
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL----KSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~----~~~l~~fg~   77 (142)
                      ..|+|+||++++        ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++    .++++|||.
T Consensus        89 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~---ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~  165 (321)
T 2a2a_A           89 DVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKK---IAHFDLKPENIMLLDKNIPIPHIKLIDFGL  165 (321)
T ss_dssp             EEEEEECCCCSCBHHHHHHTCSCEEHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESCTTSSSCCEEECCCTT
T ss_pred             EEEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCChHHEEEecCCCCcCCEEEccCcc
Confidence            478999998753        345899999999999999999999998   99999999999998776    799999999


Q ss_pred             eeeeec
Q 043694           78 ARIFVK   83 (142)
Q Consensus        78 ~~~~~~   83 (142)
                      +.....
T Consensus       166 ~~~~~~  171 (321)
T 2a2a_A          166 AHEIED  171 (321)
T ss_dssp             CEECCT
T ss_pred             ceecCc
Confidence            877654

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.35  E-value=6.6e-13  Score=95.66  Aligned_cols=70  Identities=31%  Similarity=0.460  Sum_probs=59.2

Q ss_pred             hhheeeeeCCCcc-----cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIRR-----FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~~-----~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ..|+|+||++++.     ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++....
T Consensus       104 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~  178 (371)
T 2xrw_A          104 DVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAG  178 (371)
T ss_dssp             EEEEEEECCSEEHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECCCCC-----
T ss_pred             ceEEEEEcCCCCHHHHHhhccCHHHHHHHHHHHHHHHHHHHHCC---eecccCCHHHEEEcCCCCEEEEEeecccccc
Confidence            4689999987532     35899999999999999999999998   9999999999999999999999999987654

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.35  E-value=3e-12  Score=95.64  Aligned_cols=71  Identities=34%  Similarity=0.593  Sum_probs=62.7

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC---ceEEecccce
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL---KSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~---~~~l~~fg~~   78 (142)
                      +.|+|+||++++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++   .++++|||++
T Consensus       120 ~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a  196 (504)
T 3q5i_A          120 YFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLHKHN---IVHRDIKPENILLENKNSLLNIKIVDFGLS  196 (504)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESSTTCCSSEEECCCTTC
T ss_pred             EEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCcHHHEEEecCCCCccEEEEECCCC
Confidence            4789999998753        45999999999999999999999998   99999999999998654   6899999999


Q ss_pred             eeeec
Q 043694           79 RIFVK   83 (142)
Q Consensus        79 ~~~~~   83 (142)
                      .....
T Consensus       197 ~~~~~  201 (504)
T 3q5i_A          197 SFFSK  201 (504)
T ss_dssp             EECCT
T ss_pred             EEcCC
Confidence            87654

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.35  E-value=2.4e-12  Score=90.29  Aligned_cols=71  Identities=31%  Similarity=0.463  Sum_probs=63.4

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||++++         ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.+++.|||.+..
T Consensus        98 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~  174 (314)
T 3com_A           98 DLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFMR---KIHRDIKAGNILLNTEGHAKLADFGVAGQ  174 (314)
T ss_dssp             EEEEEEECCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             EEEEEeecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---CcCCCcCHHHEEECCCCCEEEeecccchh
Confidence            468999998762         356999999999999999999999998   99999999999999999999999999876


Q ss_pred             eec
Q 043694           81 FVK   83 (142)
Q Consensus        81 ~~~   83 (142)
                      ...
T Consensus       175 ~~~  177 (314)
T 3com_A          175 LTD  177 (314)
T ss_dssp             CBT
T ss_pred             hhh
Confidence            543

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.35  E-value=3.2e-12  Score=95.28  Aligned_cols=71  Identities=31%  Similarity=0.547  Sum_probs=62.0

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC---CCceEEecccce
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE---DLKSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~---~~~~~l~~fg~~   78 (142)
                      ..|+|+||++++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.   +..++++|||++
T Consensus       110 ~~~lv~e~~~~g~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a  186 (494)
T 3lij_A          110 NYYLVMECYKGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLHKHN---IVHRDLKPENLLLESKEKDALIKIVDFGLS  186 (494)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred             EEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCChhhEEEeCCCCCCcEEEEECCCC
Confidence            4789999998753        45899999999999999999999998   999999999999975   355999999998


Q ss_pred             eeeec
Q 043694           79 RIFVK   83 (142)
Q Consensus        79 ~~~~~   83 (142)
                      .....
T Consensus       187 ~~~~~  191 (494)
T 3lij_A          187 AVFEN  191 (494)
T ss_dssp             EECBT
T ss_pred             eECCC
Confidence            87654

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.35  E-value=3.3e-12  Score=88.36  Aligned_cols=71  Identities=30%  Similarity=0.471  Sum_probs=61.1

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC---ceEEecccce
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL---KSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~---~~~l~~fg~~   78 (142)
                      ..|+++||++++.        ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.+.   .+++.|||.+
T Consensus        79 ~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~  155 (284)
T 3kk8_A           79 FHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNG---IVHRNLKPENLLLASKAKGAAVKLADFGLA  155 (284)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEESSSSTTCCEEECCCTTC
T ss_pred             EEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---cCcCCCCHHHEEEecCCCCCcEEEeeceee
Confidence            4689999987643        44899999999999999999999998   99999999999997554   4999999998


Q ss_pred             eeeec
Q 043694           79 RIFVK   83 (142)
Q Consensus        79 ~~~~~   83 (142)
                      .....
T Consensus       156 ~~~~~  160 (284)
T 3kk8_A          156 IEVND  160 (284)
T ss_dssp             EECCS
T ss_pred             EEccc
Confidence            76543

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.35  E-value=6.2e-13  Score=94.04  Aligned_cols=68  Identities=38%  Similarity=0.646  Sum_probs=61.1

Q ss_pred             hhheeeeeCCCcc------------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC
Q 043694           10 YLYLIFDVDPIRR------------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD   65 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~   65 (142)
                      +.|+|+||+++++                        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++
T Consensus       100 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIl~~  176 (327)
T 1fvr_A          100 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ---FIHRDLAARNILVG  176 (327)
T ss_dssp             EEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEC
T ss_pred             ceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCccceEEEc
Confidence            5789999986532                        26899999999999999999999998   99999999999999


Q ss_pred             CCCceEEecccceee
Q 043694           66 EDLKSKISDFGLARI   80 (142)
Q Consensus        66 ~~~~~~l~~fg~~~~   80 (142)
                      .++.++++|||++..
T Consensus       177 ~~~~~kL~Dfg~~~~  191 (327)
T 1fvr_A          177 ENYVAKIADFGLSRG  191 (327)
T ss_dssp             GGGCEEECCTTCEES
T ss_pred             CCCeEEEcccCcCcc
Confidence            999999999998864

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.34  E-value=3.8e-12  Score=89.69  Aligned_cols=70  Identities=33%  Similarity=0.474  Sum_probs=61.6

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||+.++         ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+..
T Consensus        93 ~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~g---i~H~dlkp~Nili~~~~~~kl~Dfg~~~~  169 (326)
T 1blx_A           93 KLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLARI  169 (326)
T ss_dssp             EEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECSCCSCCC
T ss_pred             eEEEEEecCCCCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCCHHHeEEcCCCCEEEecCccccc
Confidence            468899987642         234899999999999999999999998   99999999999999999999999999876


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       170 ~~  171 (326)
T 1blx_A          170 YS  171 (326)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.34  E-value=3.1e-13  Score=98.36  Aligned_cols=71  Identities=34%  Similarity=0.518  Sum_probs=59.1

Q ss_pred             hhhheeeeeCCCcc----------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEe----CCCC
Q 043694            9 LYLYLIFDVDPIRR----------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL----DEDL   68 (142)
Q Consensus         9 ~~~~lv~e~~~~~~----------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~----~~~~   68 (142)
                      ...|+|+||+.++.                ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||++    +.++
T Consensus        93 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~---ivH~Dlkp~NIll~~~~~~~~  169 (405)
T 3rgf_A           93 RKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANW---VLHRDLKPANILVMGEGPERG  169 (405)
T ss_dssp             TEEEEEEECCSEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECCSSTTTT
T ss_pred             CeEEEEEeCCCCCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC---EeCCCcCHHHeEEecCCCCCC
Confidence            35789999976521                24899999999999999999999999   9999999999999    5678


Q ss_pred             ceEEecccceeeee
Q 043694           69 KSKISDFGLARIFV   82 (142)
Q Consensus        69 ~~~l~~fg~~~~~~   82 (142)
                      .++++|||++....
T Consensus       170 ~~kl~Dfg~a~~~~  183 (405)
T 3rgf_A          170 RVKIADMGFARLFN  183 (405)
T ss_dssp             CEEECCTTCCC---
T ss_pred             cEEEEECCCceecC
Confidence            99999999987654

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.34  E-value=9.3e-13  Score=91.07  Aligned_cols=69  Identities=30%  Similarity=0.464  Sum_probs=61.4

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+++||++++.        ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.+++.|||.+...
T Consensus        83 ~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~  159 (279)
T 3fdn_A           83 RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIKPENLLLGSAGELKIADFGWSVHA  159 (279)
T ss_dssp             EEEEEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTT---CEECCCCGGGEEECTTSCEEECSCCEESCC
T ss_pred             EEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---EecccCChHhEEEcCCCCEEEEeccccccC
Confidence            4689999987633        45899999999999999999999998   999999999999999999999999987544

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.34  E-value=7e-13  Score=93.16  Aligned_cols=69  Identities=23%  Similarity=0.429  Sum_probs=57.4

Q ss_pred             hhheeeeeCCC-------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPI-------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~-------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      +.|+++|+...       ....+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++ ++.++++|||.+....
T Consensus       102 ~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIl~~-~~~~kL~Dfg~~~~~~  177 (313)
T 3cek_A          102 YIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHG---IVHSDLKPANFLIV-DGMLKLIDFGIANQMQ  177 (313)
T ss_dssp             EEEEEECCCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEE-TTEEEECCCSSSCC--
T ss_pred             EEEEEEecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCcccEEEE-CCeEEEeecccccccc
Confidence            46788885432       2356899999999999999999999998   99999999999996 4789999999987654

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.34  E-value=5.2e-12  Score=87.75  Aligned_cols=70  Identities=29%  Similarity=0.474  Sum_probs=60.1

Q ss_pred             hhheeeeeCCCcc------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC---CCCceEEec
Q 043694           10 YLYLIFDVDPIRR------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD---EDLKSKISD   74 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~---~~~~~~l~~   74 (142)
                      ..|+|+||++++.            ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++   .++.++++|
T Consensus        94 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~dikp~NIl~~~~~~~~~~kl~D  170 (285)
T 3is5_A           94 NMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQH---VVHKDLKPENILFQDTSPHSPIKIID  170 (285)
T ss_dssp             EEEEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEESSSSTTCCEEECC
T ss_pred             eEEEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCC---EEECCCCHHHEEEecCCCCCCEEEEe
Confidence            4689999987642            55999999999999999999999998   99999999999994   457899999


Q ss_pred             ccceeeee
Q 043694           75 FGLARIFV   82 (142)
Q Consensus        75 fg~~~~~~   82 (142)
                      ||.+....
T Consensus       171 fg~a~~~~  178 (285)
T 3is5_A          171 FGLAELFK  178 (285)
T ss_dssp             CCCCCC--
T ss_pred             eecceecC
Confidence            99987654

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.34  E-value=1.2e-12  Score=93.58  Aligned_cols=70  Identities=27%  Similarity=0.451  Sum_probs=57.4

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC---CCceEEecccce
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE---DLKSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~---~~~~~l~~fg~~   78 (142)
                      ..|+|+||++++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.   ++.++++|||++
T Consensus       122 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a  198 (349)
T 2w4o_A          122 EISLVLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHENG---IVHRDLKPENLLYATPAPDAPLKIADFGLS  198 (349)
T ss_dssp             EEEEEECCCCSCBHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEESSSSTTCCEEECCCC--
T ss_pred             eEEEEEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCcccEEEecCCCCCCEEEccCccc
Confidence            4689999987632        45899999999999999999999998   999999999999975   788999999998


Q ss_pred             eeee
Q 043694           79 RIFV   82 (142)
Q Consensus        79 ~~~~   82 (142)
                      ....
T Consensus       199 ~~~~  202 (349)
T 2w4o_A          199 KIVE  202 (349)
T ss_dssp             ----
T ss_pred             cccC
Confidence            7654

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.34  E-value=1.3e-12  Score=93.55  Aligned_cols=70  Identities=33%  Similarity=0.456  Sum_probs=59.2

Q ss_pred             hhheeeeeCCC--------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPI--------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+|+||+.+        ....+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+...
T Consensus       108 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~  184 (362)
T 3pg1_A          108 KLYLVTELMRTDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEAG---VVHRDLHPGNILLADNNDITICDFNLARED  184 (362)
T ss_dssp             EEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECCTTC----
T ss_pred             eEEEEEccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCc---CEecCCChHHEEEcCCCCEEEEecCccccc
Confidence            46899999775        2346999999999999999999999998   999999999999999999999999998754


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       185 ~  185 (362)
T 3pg1_A          185 T  185 (362)
T ss_dssp             -
T ss_pred             c
Confidence            3

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.34  E-value=1.3e-12  Score=92.76  Aligned_cols=55  Identities=31%  Similarity=0.509  Sum_probs=49.1

Q ss_pred             cCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC--ceEEecccceeeee
Q 043694           25 LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL--KSKISDFGLARIFV   82 (142)
Q Consensus        25 l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~--~~~l~~fg~~~~~~   82 (142)
                      +++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.+.  .++++|||.+..+.
T Consensus       165 ~~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~  221 (345)
T 3hko_A          165 QREKLISNIMRQIFSALHYLHNQG---ICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFY  221 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESCSSSCCEEECCCTTCEEGG
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHCC---ccccCCChhhEEEecCCCceEEEeecccccccc
Confidence            467788889999999999999998   99999999999998665  89999999987654

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.34  E-value=4.4e-12  Score=91.63  Aligned_cols=70  Identities=31%  Similarity=0.370  Sum_probs=59.2

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhc--cCCCceEecccCCCcEEeC--CCCceEEeccc
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQE--YSKLIVIHQDLKASNILLD--EDLKSKISDFG   76 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~--~~~~~i~h~~l~~~nil~~--~~~~~~l~~fg   76 (142)
                      ..|+|+||+.++         ...+++..+..++.|++.|+.|+|.  .+   ++|+|+++.||+++  .++.++++|||
T Consensus       130 ~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~---ivHrDlkp~NIll~~~~~~~~kL~DFG  206 (382)
T 2vx3_A          130 HLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELS---IIHCDLKPENILLCNPKRSAIKIVDFG  206 (382)
T ss_dssp             EEEEEEECCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTC---EECCCCSGGGEEESSTTSCCEEECCCT
T ss_pred             ceEEEEecCCCCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCC---EEcCCCCcccEEEecCCCCcEEEEecc
Confidence            467999998652         1458999999999999999999995  45   99999999999995  46789999999


Q ss_pred             ceeeee
Q 043694           77 LARIFV   82 (142)
Q Consensus        77 ~~~~~~   82 (142)
                      ++....
T Consensus       207 ~a~~~~  212 (382)
T 2vx3_A          207 SSCQLG  212 (382)
T ss_dssp             TCEETT
T ss_pred             Cceecc
Confidence            987654

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.34  E-value=3.5e-12  Score=93.99  Aligned_cols=71  Identities=21%  Similarity=0.311  Sum_probs=64.2

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+|+|+||++++         ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||+++.
T Consensus       148 ~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~g---iiHrDLKp~NILl~~~g~vkL~DFGla~~  224 (437)
T 4aw2_A          148 NLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLH---YVHRDIKPDNILMDMNGHIRLADFGSCLK  224 (437)
T ss_dssp             EEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhCC---eEecccCHHHeeEcCCCCEEEcchhhhhh
Confidence            478999998764         356999999999999999999999998   99999999999999999999999999876


Q ss_pred             eec
Q 043694           81 FVK   83 (142)
Q Consensus        81 ~~~   83 (142)
                      ...
T Consensus       225 ~~~  227 (437)
T 4aw2_A          225 LME  227 (437)
T ss_dssp             CCT
T ss_pred             ccc
Confidence            643

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.34  E-value=4.7e-12  Score=90.74  Aligned_cols=70  Identities=24%  Similarity=0.374  Sum_probs=58.6

Q ss_pred             hhheeeeeCCC---------cccccCHHHHHHHHHHHHHHhhhhhcc-CCCceEecccCCCcEEeC------CCCceEEe
Q 043694           10 YLYLIFDVDPI---------RRFILDWKTCIHIIQGITQGLLYLQEY-SKLIVIHQDLKASNILLD------EDLKSKIS   73 (142)
Q Consensus        10 ~~~lv~e~~~~---------~~~~l~~~~~~~~~~~i~~~l~~lh~~-~~~~i~h~~l~~~nil~~------~~~~~~l~   73 (142)
                      +.++++|++..         ....+++..+..++.|++.|+.|||+. +   ++|+|+++.||+++      ....++++
T Consensus       104 ~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~---ivH~Dikp~NIll~~~~~~~~~~~~kl~  180 (373)
T 1q8y_A          104 HVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCG---IIHTDIKPENVLMEIVDSPENLIQIKIA  180 (373)
T ss_dssp             EEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTC---EECSCCSGGGEEEEEEETTTTEEEEEEC
T ss_pred             eEEEEEecCCCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCC---EEecCCChHHeEEeccCCCcCcceEEEc
Confidence            57888888732         124599999999999999999999998 8   99999999999994      33479999


Q ss_pred             cccceeeee
Q 043694           74 DFGLARIFV   82 (142)
Q Consensus        74 ~fg~~~~~~   82 (142)
                      |||++....
T Consensus       181 Dfg~a~~~~  189 (373)
T 1q8y_A          181 DLGNACWYD  189 (373)
T ss_dssp             CCTTCEETT
T ss_pred             ccccccccC
Confidence            999987654

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.33  E-value=4.4e-12  Score=89.56  Aligned_cols=71  Identities=23%  Similarity=0.313  Sum_probs=61.5

Q ss_pred             hhheeeeeCCC---------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC-CCCceEEeccccee
Q 043694           10 YLYLIFDVDPI---------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD-EDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~---------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~-~~~~~~l~~fg~~~   79 (142)
                      ..|+++|+...         ....+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++ .++.++++|||.+.
T Consensus       122 ~~~lv~e~~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~  198 (320)
T 3a99_A          122 SFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCG---VLHRDIKDENILIDLNRGELKLIDFGSGA  198 (320)
T ss_dssp             EEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             cEEEEEEcCCCCccHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---cEeCCCCHHHEEEeCCCCCEEEeeCcccc
Confidence            46788888764         1356899999999999999999999998   99999999999998 67899999999988


Q ss_pred             eeec
Q 043694           80 IFVK   83 (142)
Q Consensus        80 ~~~~   83 (142)
                      ....
T Consensus       199 ~~~~  202 (320)
T 3a99_A          199 LLKD  202 (320)
T ss_dssp             ECCS
T ss_pred             cccc
Confidence            7653

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.33  E-value=3.8e-12  Score=91.79  Aligned_cols=68  Identities=15%  Similarity=0.193  Sum_probs=57.9

Q ss_pred             hheeeeeCCCc--------------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccc
Q 043694           11 LYLIFDVDPIR--------------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFG   76 (142)
Q Consensus        11 ~~lv~e~~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg   76 (142)
                      .|+++||+.+.              ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||
T Consensus       175 ~~lv~E~~~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivHrDikp~NIll~~~~~~kL~DFG  251 (377)
T 3byv_A          175 RFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG---LVHTYLRPVDIVLDQRGGVFLTGFE  251 (377)
T ss_dssp             EEEEEECCSEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCGG
T ss_pred             EEEEEeccCCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEEech
Confidence            78999998531              112335888889999999999999998   9999999999999999999999999


Q ss_pred             ceeee
Q 043694           77 LARIF   81 (142)
Q Consensus        77 ~~~~~   81 (142)
                      ++...
T Consensus       252 ~a~~~  256 (377)
T 3byv_A          252 HLVRD  256 (377)
T ss_dssp             GCEET
T ss_pred             hheec
Confidence            98753

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.33  E-value=3.1e-12  Score=90.98  Aligned_cols=70  Identities=23%  Similarity=0.398  Sum_probs=60.5

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC---CCceEEeccc
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE---DLKSKISDFG   76 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~---~~~~~l~~fg   76 (142)
                      +.|+|+||+++++          ..+++.++..++.|++.|+.|||+.+   ++|+|+++.||+++.   +..++++|||
T Consensus       100 ~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~~---ivH~dlkp~NIll~~~~~~~~~kl~Dfg  176 (336)
T 3fhr_A          100 CLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHN---IAHRDVKPENLLYTSKEKDAVLKLTDFG  176 (336)
T ss_dssp             EEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCSSTTCCEEECCCT
T ss_pred             eEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEEecCCCceEEEeccc
Confidence            4789999987632          36999999999999999999999998   999999999999975   4559999999


Q ss_pred             ceeeee
Q 043694           77 LARIFV   82 (142)
Q Consensus        77 ~~~~~~   82 (142)
                      .+....
T Consensus       177 ~~~~~~  182 (336)
T 3fhr_A          177 FAKETT  182 (336)
T ss_dssp             TCEEC-
T ss_pred             cceecc
Confidence            987654

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.33  E-value=2e-12  Score=93.11  Aligned_cols=69  Identities=30%  Similarity=0.482  Sum_probs=59.1

Q ss_pred             hheeeeeCCCc-----ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           11 LYLIFDVDPIR-----RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        11 ~~lv~e~~~~~-----~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .|+|+||+.+.     ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+....
T Consensus       122 ~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~  195 (371)
T 4exu_A          122 FYLVMPFMQTDLQKIMGMEFSEEKIQYLVYQMLKGLKYIHSAG---VVHRDLKPGNLAVNEDCELKILDFGLARHAD  195 (371)
T ss_dssp             CEEEEECCCEEHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECSTTCC----
T ss_pred             EEEEEccccccHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCcCHHHeEECCCCCEEEEecCcccccc
Confidence            38999997742     244999999999999999999999998   9999999999999999999999999987654

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.32  E-value=1.3e-12  Score=91.86  Aligned_cols=73  Identities=26%  Similarity=0.285  Sum_probs=56.4

Q ss_pred             hhheeeeeCCCcc-----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCc-eEEecccc
Q 043694           10 YLYLIFDVDPIRR-----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLK-SKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~~-----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~-~~l~~fg~   77 (142)
                      ..|+|+||++++.           ..+++..+..++.+++.|+.|||+.....++|+|+++.||+++.++. ++++|||.
T Consensus        73 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~  152 (307)
T 2eva_A           73 PVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGT  152 (307)
T ss_dssp             TTEEEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC
T ss_pred             CcEEEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccc
Confidence            3689999987632           23789999999999999999999932222999999999999987765 79999998


Q ss_pred             eeeee
Q 043694           78 ARIFV   82 (142)
Q Consensus        78 ~~~~~   82 (142)
                      +....
T Consensus       153 ~~~~~  157 (307)
T 2eva_A          153 ACDIQ  157 (307)
T ss_dssp             -----
T ss_pred             ccccc
Confidence            86543

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.32  E-value=1.2e-12  Score=95.80  Aligned_cols=69  Identities=30%  Similarity=0.478  Sum_probs=59.9

Q ss_pred             hheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC---CceEEeccccee
Q 043694           11 LYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED---LKSKISDFGLAR   79 (142)
Q Consensus        11 ~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~---~~~~l~~fg~~~   79 (142)
                      .|+|+||++++        ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.+   ..++++|||++.
T Consensus       214 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~  290 (419)
T 3i6u_A          214 YYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENG---IIHRDLKPENVLLSSQEEDCLIKITDFGHSK  290 (419)
T ss_dssp             EEEEEECCTTCBGGGGTSSSCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESSSSSSCCEEECCSSTTT
T ss_pred             eEEEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChHhEEEecCCCcceEEEeecccce
Confidence            57999998764        245899999999999999999999998   9999999999999654   459999999987


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      ...
T Consensus       291 ~~~  293 (419)
T 3i6u_A          291 ILG  293 (419)
T ss_dssp             SCC
T ss_pred             ecC
Confidence            654

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.32  E-value=1.6e-12  Score=91.92  Aligned_cols=71  Identities=31%  Similarity=0.507  Sum_probs=63.2

Q ss_pred             hhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||+++++         ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+..
T Consensus       118 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dikp~NIli~~~~~~kL~Dfg~~~~  194 (326)
T 2w1i_A          118 NLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKV  194 (326)
T ss_dssp             CCEEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEEEETTEEEECCCTTCEE
T ss_pred             ceEEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCC---EeccCCCcceEEEcCCCcEEEecCcchhh
Confidence            5789999987632         45899999999999999999999998   99999999999999999999999999887


Q ss_pred             eec
Q 043694           81 FVK   83 (142)
Q Consensus        81 ~~~   83 (142)
                      ...
T Consensus       195 ~~~  197 (326)
T 2w1i_A          195 LPQ  197 (326)
T ss_dssp             CCS
T ss_pred             ccc
Confidence            643

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.32  E-value=4.3e-12  Score=92.83  Aligned_cols=71  Identities=27%  Similarity=0.403  Sum_probs=64.1

Q ss_pred             hhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ++|+|+||++++.       ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++....
T Consensus       143 ~~~lV~E~~~gg~L~~~l~~~~~~e~~~~~~~~qi~~aL~~LH~~g---ivHrDLKp~NILl~~~g~ikL~DFG~a~~~~  219 (410)
T 3v8s_A          143 YLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMG---FIHRDVKPDNMLLDKSGHLKLADFGTCMKMN  219 (410)
T ss_dssp             EEEEEECCCTTEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred             EEEEEEeCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCCHHHeeECCCCCEEEeccceeEeec
Confidence            5799999997743       45899999999999999999999998   9999999999999999999999999997765


Q ss_pred             c
Q 043694           83 K   83 (142)
Q Consensus        83 ~   83 (142)
                      .
T Consensus       220 ~  220 (410)
T 3v8s_A          220 K  220 (410)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.32  E-value=1.3e-12  Score=92.61  Aligned_cols=69  Identities=32%  Similarity=0.469  Sum_probs=59.0

Q ss_pred             hhheeeeeCCCc-------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC-----CCCceEEecccc
Q 043694           10 YLYLIFDVDPIR-------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD-----EDLKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~-------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~-----~~~~~~l~~fg~   77 (142)
                      ..|+|+||+++.       ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++     .+..++++|||.
T Consensus       107 ~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~i~~ql~~~l~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~  183 (329)
T 3gbz_A          107 RLHLIFEYAENDLKKYMDKNPDVSMRVIKSFLYQLINGVNFCHSRR---CLHRDLKPQNLLLSVSDASETPVLKIGDFGL  183 (329)
T ss_dssp             EEEEEEECCSEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEC-----CCEEEECCTTH
T ss_pred             EEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCC---EECCCCCHHHEEEecCCCCccceEEECcCCC
Confidence            478999998752       245999999999999999999999998   99999999999994     445699999998


Q ss_pred             eeee
Q 043694           78 ARIF   81 (142)
Q Consensus        78 ~~~~   81 (142)
                      +...
T Consensus       184 a~~~  187 (329)
T 3gbz_A          184 ARAF  187 (329)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            8654

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.32  E-value=3.4e-12  Score=88.67  Aligned_cols=70  Identities=26%  Similarity=0.443  Sum_probs=60.6

Q ss_pred             hhheeeeeCCCc-----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC-CCceEEecccc
Q 043694           10 YLYLIFDVDPIR-----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE-DLKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~-----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~-~~~~~l~~fg~   77 (142)
                      ..|+|+||++++           ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++. ++.++++|||.
T Consensus        93 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~kl~Dfg~  169 (295)
T 2clq_A           93 FIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQ---IVHRDIKGDNVLINTYSGVLKISDFGT  169 (295)
T ss_dssp             EEEEEEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTCCEEECCTTT
T ss_pred             cEEEEEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCC---EEccCCChhhEEEECCCCCEEEeeccc
Confidence            468899998652           234678899999999999999999998   999999999999987 78999999999


Q ss_pred             eeeee
Q 043694           78 ARIFV   82 (142)
Q Consensus        78 ~~~~~   82 (142)
                      +....
T Consensus       170 ~~~~~  174 (295)
T 2clq_A          170 SKRLA  174 (295)
T ss_dssp             CEESC
T ss_pred             ccccC
Confidence            87654

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.31  E-value=9.6e-12  Score=86.17  Aligned_cols=70  Identities=27%  Similarity=0.434  Sum_probs=62.1

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+++||++++.        ..+++..+..++.+++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||.+...
T Consensus        88 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~  164 (284)
T 2vgo_A           88 RIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCHERK---VIHRDIKPENLLMGYKGELKIADFGWSVHA  164 (284)
T ss_dssp             EEEEEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EEEEEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCHHHEEEcCCCCEEEecccccccC
Confidence            4688999987632        45899999999999999999999998   999999999999999999999999988654


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       165 ~  165 (284)
T 2vgo_A          165 P  165 (284)
T ss_dssp             S
T ss_pred             c
Confidence            4

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.31  E-value=1.7e-11  Score=88.97  Aligned_cols=71  Identities=25%  Similarity=0.424  Sum_probs=61.4

Q ss_pred             hhheeeeeCCCcc-----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEe----CCCCceEEec
Q 043694           10 YLYLIFDVDPIRR-----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL----DEDLKSKISD   74 (142)
Q Consensus        10 ~~~lv~e~~~~~~-----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~----~~~~~~~l~~   74 (142)
                      +.|+|+||++++.           ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||++    +.+..++++|
T Consensus        83 ~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~kL~D  159 (396)
T 4eut_A           83 HKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENG---IVHRNIKPGNIMRVIGEDGQSVYKLTD  159 (396)
T ss_dssp             CEEEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEEECTTSCEEEEECC
T ss_pred             eeEEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCcCHHHEEEeecCCCceeEEEec
Confidence            5689999987532           22999999999999999999999998   9999999999998    6667799999


Q ss_pred             ccceeeeec
Q 043694           75 FGLARIFVK   83 (142)
Q Consensus        75 fg~~~~~~~   83 (142)
                      ||.+.....
T Consensus       160 FG~a~~~~~  168 (396)
T 4eut_A          160 FGAARELED  168 (396)
T ss_dssp             GGGCEECCC
T ss_pred             CCCceEccC
Confidence            999987644

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.31  E-value=3.9e-12  Score=91.65  Aligned_cols=70  Identities=36%  Similarity=0.491  Sum_probs=54.7

Q ss_pred             hhheeeeeCCC------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPI------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ..|++++++..      ....+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||+++...
T Consensus       108 ~~~lv~e~~~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivH~Dlkp~NIll~~~~~~kL~DFG~a~~~~  183 (367)
T 2fst_X          108 DVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLARHTA  183 (367)
T ss_dssp             CCEEEEECCCEECC-----CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECC--------
T ss_pred             eEEEEecccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHhhEEECCCCCEEEeecccccccc
Confidence            46888888643      2245999999999999999999999998   9999999999999999999999999987654

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.31  E-value=6.2e-12  Score=92.01  Aligned_cols=71  Identities=23%  Similarity=0.317  Sum_probs=64.0

Q ss_pred             hhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ++|+|+||++++.         ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++..
T Consensus       135 ~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~g---iiHrDLKp~NILld~~g~vkL~DFGla~~  211 (412)
T 2vd5_A          135 YLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRLG---YVHRDIKPDNILLDRCGHIRLADFGSCLK  211 (412)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecccCHHHeeecCCCCEEEeechhhee
Confidence            5799999987642         36999999999999999999999998   99999999999999999999999999887


Q ss_pred             eec
Q 043694           81 FVK   83 (142)
Q Consensus        81 ~~~   83 (142)
                      ...
T Consensus       212 ~~~  214 (412)
T 2vd5_A          212 LRA  214 (412)
T ss_dssp             CCT
T ss_pred             ccC
Confidence            654

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.31  E-value=5.6e-12  Score=87.79  Aligned_cols=71  Identities=30%  Similarity=0.568  Sum_probs=63.3

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+|+||++++.        ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.+++.|||.+...
T Consensus        98 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~  174 (298)
T 1phk_A           98 FFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLN---IVHRDLKPENILLDDDMNIKLTDFGFSCQL  174 (298)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             eEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCcceEEEcCCCcEEEecccchhhc
Confidence            4789999987632        46899999999999999999999998   999999999999999999999999998765


Q ss_pred             ec
Q 043694           82 VK   83 (142)
Q Consensus        82 ~~   83 (142)
                      ..
T Consensus       175 ~~  176 (298)
T 1phk_A          175 DP  176 (298)
T ss_dssp             CT
T ss_pred             CC
Confidence            43

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.30  E-value=2.6e-12  Score=89.09  Aligned_cols=70  Identities=29%  Similarity=0.428  Sum_probs=62.1

Q ss_pred             hheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           11 LYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        11 ~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .++++||++++         ...+++..+..++.+++.|+.|+|+.+   ++|+|+++.||+++.++.+++.|||.+...
T Consensus        95 ~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~Nili~~~~~~kl~Dfg~~~~~  171 (291)
T 1u46_A           95 MKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKR---FIHRDLAARNLLLATRDLVKIGDFGLMRAL  171 (291)
T ss_dssp             CEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEEEETTEEEECCCTTCEEC
T ss_pred             ceeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHhCC---cccCCCchheEEEcCCCCEEEccccccccc
Confidence            57889987753         245999999999999999999999998   999999999999999999999999998776


Q ss_pred             ec
Q 043694           82 VK   83 (142)
Q Consensus        82 ~~   83 (142)
                      ..
T Consensus       172 ~~  173 (291)
T 1u46_A          172 PQ  173 (291)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.30  E-value=1.8e-12  Score=89.67  Aligned_cols=70  Identities=26%  Similarity=0.410  Sum_probs=61.4

Q ss_pred             hhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+++||++++.         ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.+++.|||.+..
T Consensus        86 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~  162 (281)
T 3cc6_A           86 PTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESIN---CVHRDIAVRNILVASPECVKLGDFGLSRY  162 (281)
T ss_dssp             SCEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEEEETTEEEECCCCGGGC
T ss_pred             CCEEEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCccceEEECCCCcEEeCccCCCcc
Confidence            3578999987532         45899999999999999999999998   99999999999999999999999998876


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       163 ~~  164 (281)
T 3cc6_A          163 IE  164 (281)
T ss_dssp             C-
T ss_pred             cc
Confidence            54

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.30  E-value=2.8e-12  Score=91.06  Aligned_cols=73  Identities=21%  Similarity=0.286  Sum_probs=64.0

Q ss_pred             HhhhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhh-ccCCCceEecccCCCcEEeCCCC-----------
Q 043694            8 QLYLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQ-EYSKLIVIHQDLKASNILLDEDL-----------   68 (142)
Q Consensus         8 ~~~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh-~~~~~~i~h~~l~~~nil~~~~~-----------   68 (142)
                      ....|+|+||++++.       ..+++..+..++.|++.|+.||| +.+   ++|+|+++.||+++.++           
T Consensus       134 ~~~~~lv~E~~~~g~ll~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~---ivHrDlKp~NILl~~~~~~~~~~~~~~~  210 (336)
T 2vuw_A          134 DDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEASLR---FEHRDLHWGNVLLKKTSLKKLHYTLNGK  210 (336)
T ss_dssp             TTCEEEEEEEECCCEETGGGTTTCCCHHHHHHHHHHHHHHHHHHHHHHC---CBCSCCCGGGEEEEECSCSEEEEEETTE
T ss_pred             cCeEEEEEEecCCCccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhCC---EeECCCCHHHEEEeccCCcceeeeccCc
Confidence            457899999976642       45899999999999999999999 888   99999999999998776           


Q ss_pred             ---------ceEEecccceeeeec
Q 043694           69 ---------KSKISDFGLARIFVK   83 (142)
Q Consensus        69 ---------~~~l~~fg~~~~~~~   83 (142)
                               .++++|||+++....
T Consensus       211 ~~~~~~~~~~vkL~DFG~a~~~~~  234 (336)
T 2vuw_A          211 SSTIPSCGLQVSIIDYTLSRLERD  234 (336)
T ss_dssp             EEEEECTTEEEEECCCTTCBEEET
T ss_pred             cccccCCCceEEEeeccccEecCC
Confidence                     899999999987654

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.30  E-value=2.4e-12  Score=89.42  Aligned_cols=71  Identities=27%  Similarity=0.385  Sum_probs=61.2

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC-CCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD-EDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~-~~~~~~l~~fg~~~~   80 (142)
                      +.|+|+||++++.        ..+++..+..++.+++.|+.|||+.+ ++++|+|+++.||+++ .++.++++|||.+..
T Consensus       103 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~-~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~  181 (290)
T 1t4h_A          103 CIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATL  181 (290)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCSCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred             eEEEEEEecCCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHcCC-CCEEECCCCHHHEEEECCCCCEEEeeCCCccc
Confidence            4789999987643        55899999999999999999999875 2489999999999997 788999999998864


Q ss_pred             e
Q 043694           81 F   81 (142)
Q Consensus        81 ~   81 (142)
                      .
T Consensus       182 ~  182 (290)
T 1t4h_A          182 K  182 (290)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.30  E-value=2.8e-12  Score=95.38  Aligned_cols=70  Identities=30%  Similarity=0.519  Sum_probs=60.9

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC---CCCceEEecccce
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD---EDLKSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~---~~~~~~l~~fg~~   78 (142)
                      ..|+|+||+.++.        ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++   .+..++++|||++
T Consensus        95 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a  171 (486)
T 3mwu_A           95 SFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLS  171 (486)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEESSSSTTCCEEECSCSCT
T ss_pred             EEEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCchHHEEEecCCCCCCEEEEECCcC
Confidence            4789999987643        45899999999999999999999998   99999999999995   4567999999988


Q ss_pred             eeee
Q 043694           79 RIFV   82 (142)
Q Consensus        79 ~~~~   82 (142)
                      ....
T Consensus       172 ~~~~  175 (486)
T 3mwu_A          172 TCFQ  175 (486)
T ss_dssp             TTBC
T ss_pred             eECC
Confidence            7543

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.30  E-value=6.8e-13  Score=93.82  Aligned_cols=69  Identities=30%  Similarity=0.449  Sum_probs=59.0

Q ss_pred             hhheeeeeCCCcc---------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC---CCCceE
Q 043694           10 YLYLIFDVDPIRR---------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD---EDLKSK   71 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~---~~~~~~   71 (142)
                      ..|+|+||++++.               ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++   .+..++
T Consensus       107 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~---i~H~dlkp~NIli~~~~~~~~~k  183 (327)
T 2yfx_A          107 PRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENH---FIHRDIAARNCLLTCPGPGRVAK  183 (327)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESCSSTTCCEE
T ss_pred             CcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCC---eecCcCCHhHEEEecCCCcceEE
Confidence            4689999986521               34899999999999999999999998   99999999999998   345699


Q ss_pred             Eecccceeee
Q 043694           72 ISDFGLARIF   81 (142)
Q Consensus        72 l~~fg~~~~~   81 (142)
                      ++|||.+...
T Consensus       184 l~Dfg~~~~~  193 (327)
T 2yfx_A          184 IGDFGMARDI  193 (327)
T ss_dssp             ECCCHHHHHH
T ss_pred             ECcccccccc
Confidence            9999987644

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.30  E-value=1.1e-12  Score=101.07  Aligned_cols=71  Identities=27%  Similarity=0.500  Sum_probs=63.2

Q ss_pred             hhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||++++.         ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++..
T Consensus       464 ~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDikp~NILl~~~~~vkL~DFG~a~~  540 (656)
T 2j0j_A          464 PVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRY  540 (656)
T ss_dssp             SCEEEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCCCCCCS
T ss_pred             ceEEEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccccchHhEEEeCCCCEEEEecCCCee
Confidence            4789999987642         35899999999999999999999998   99999999999999999999999999876


Q ss_pred             eec
Q 043694           81 FVK   83 (142)
Q Consensus        81 ~~~   83 (142)
                      ...
T Consensus       541 ~~~  543 (656)
T 2j0j_A          541 MED  543 (656)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            543

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.30  E-value=1e-12  Score=90.08  Aligned_cols=70  Identities=31%  Similarity=0.497  Sum_probs=62.2

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+++||++++         ...+++..+..++.+++.|+.|+|+.+   ++|+|+++.||+++.++.+++.|||.+..
T Consensus        77 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nili~~~~~~kl~dfg~~~~  153 (267)
T 3t9t_A           77 PICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRF  153 (267)
T ss_dssp             SCEEEECCCTTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCCGGGEEECGGGCEEECCTTGGGG
T ss_pred             CeEEEEeCCCCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCchheEEECCCCCEEEcccccccc
Confidence            478999998753         245899999999999999999999998   99999999999999999999999998876


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       154 ~~  155 (267)
T 3t9t_A          154 VL  155 (267)
T ss_dssp             BC
T ss_pred             cc
Confidence            53

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.29  E-value=1.3e-12  Score=91.81  Aligned_cols=70  Identities=24%  Similarity=0.246  Sum_probs=59.4

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+++||++++        ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.+++.|||.+...
T Consensus       108 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~  184 (309)
T 2h34_A          108 QLYVDMRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAHAAG---ATHRDVKPENILVSADDFAYLVDFGIASAT  184 (309)
T ss_dssp             EEEEEEECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECSCCC----
T ss_pred             eEEEEEEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCc---CCcCCCChHHEEEcCCCCEEEecCccCccc
Confidence            578999998763        245999999999999999999999998   999999999999999999999999987665


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       185 ~  185 (309)
T 2h34_A          185 T  185 (309)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.29  E-value=6.6e-12  Score=88.18  Aligned_cols=69  Identities=23%  Similarity=0.319  Sum_probs=61.7

Q ss_pred             hhheeeeeCCCc------------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccc
Q 043694           10 YLYLIFDVDPIR------------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      ..|+|+||+.++            ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.+++.|||.
T Consensus       104 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~dlkp~NIl~~~~~~~kl~dfg~  180 (317)
T 2buj_A          104 EAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKG---YAHRDLKPTNILLGDEGQPVLMDLGS  180 (317)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCSS
T ss_pred             eeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEEcCCCCEEEEecCc
Confidence            567999998763            355999999999999999999999998   99999999999999999999999998


Q ss_pred             eeee
Q 043694           78 ARIF   81 (142)
Q Consensus        78 ~~~~   81 (142)
                      +...
T Consensus       181 ~~~~  184 (317)
T 2buj_A          181 MNQA  184 (317)
T ss_dssp             CEES
T ss_pred             chhc
Confidence            7653

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.29  E-value=3.8e-12  Score=89.40  Aligned_cols=70  Identities=26%  Similarity=0.363  Sum_probs=59.5

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCc---eEEecccce
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLK---SKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~---~~l~~fg~~   78 (142)
                      ..|+|+||++++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.   ++++|||++
T Consensus        85 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~  161 (316)
T 2ac3_A           85 RFYLVFEKMRGGSILSHIHKRRHFNELEASVVVQDVASALDFLHNKG---IAHRDLKPENILCEHPNQVSPVKICDFDLG  161 (316)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEESCSSSSCSEEECCTTCC
T ss_pred             EEEEEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCC---ceeCCCCHHHEEEccCCCcCceEEEEccCc
Confidence            5789999987643        45899999999999999999999998   999999999999987654   899999988


Q ss_pred             eeee
Q 043694           79 RIFV   82 (142)
Q Consensus        79 ~~~~   82 (142)
                      ....
T Consensus       162 ~~~~  165 (316)
T 2ac3_A          162 SGIK  165 (316)
T ss_dssp             C---
T ss_pred             cccc
Confidence            7543

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.29  E-value=1e-11  Score=86.52  Aligned_cols=69  Identities=36%  Similarity=0.549  Sum_probs=61.5

Q ss_pred             hhheeeeeCCCc----------------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEe
Q 043694           10 YLYLIFDVDPIR----------------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKIS   73 (142)
Q Consensus        10 ~~~lv~e~~~~~----------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~   73 (142)
                      ..|+|+||++++                ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++
T Consensus        87 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~  163 (303)
T 2vwi_A           87 ELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNG---QIHRDVKAGNILLGEDGSVQIA  163 (303)
T ss_dssp             CEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTTCCEEEC
T ss_pred             CcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCC---CCCCCCChhhEEEcCCCCEEEE
Confidence            478999998653                345899999999999999999999998   9999999999999999999999


Q ss_pred             cccceeee
Q 043694           74 DFGLARIF   81 (142)
Q Consensus        74 ~fg~~~~~   81 (142)
                      |||.+...
T Consensus       164 dfg~~~~~  171 (303)
T 2vwi_A          164 DFGVSAFL  171 (303)
T ss_dssp             CCHHHHHC
T ss_pred             eccchhee
Confidence            99987654

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.29  E-value=2.7e-12  Score=91.40  Aligned_cols=70  Identities=31%  Similarity=0.439  Sum_probs=62.4

Q ss_pred             hhheeeeeCCCc------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIR------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ..|+++||+.+.      ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+....
T Consensus        88 ~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~---ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~  163 (353)
T 2b9h_A           88 EVYIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSN---VIHRDLKPSNLLINSNCDLKVCDFGLARIID  163 (353)
T ss_dssp             CEEEEECCCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             eEEEEEeccCccHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEEcCCCcEEEEecccccccc
Confidence            468899997652      245899999999999999999999998   9999999999999999999999999988654

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.28  E-value=3.3e-12  Score=89.57  Aligned_cols=70  Identities=20%  Similarity=0.390  Sum_probs=57.3

Q ss_pred             hhheeeeeCCCc------------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccc
Q 043694           10 YLYLIFDVDPIR------------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      ..|+++||++++            ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.+++.|||.
T Consensus       106 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dl~p~NIl~~~~~~~kl~Dfg~  182 (310)
T 2wqm_A          106 ELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRR---VMHRDIKPANVFITATGVVKLGDLGL  182 (310)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCC--
T ss_pred             cEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCC---eeCCCCcHHHEEEcCCCCEEEEeccc
Confidence            578899998763            244899999999999999999999998   99999999999999999999999998


Q ss_pred             eeeee
Q 043694           78 ARIFV   82 (142)
Q Consensus        78 ~~~~~   82 (142)
                      +....
T Consensus       183 ~~~~~  187 (310)
T 2wqm_A          183 GRFFS  187 (310)
T ss_dssp             -----
T ss_pred             eeeec
Confidence            87654

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.28  E-value=2.3e-12  Score=95.71  Aligned_cols=71  Identities=32%  Similarity=0.570  Sum_probs=61.9

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC---CCCceEEecccce
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD---EDLKSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~---~~~~~~l~~fg~~   78 (142)
                      +.|+|+||+.++        ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++   .++.++++|||++
T Consensus       100 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a  176 (484)
T 3nyv_A          100 YFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKNK---IVHRDLKPENLLLESKSKDANIRIIDFGLS  176 (484)
T ss_dssp             EEEEEECCCCSCBHHHHHHTCSCCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESSSSTTCCEEECCTTHH
T ss_pred             EEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHHHEEEecCCCCCcEEEEeeeee
Confidence            578999998764        356999999999999999999999998   99999999999994   5678999999988


Q ss_pred             eeeec
Q 043694           79 RIFVK   83 (142)
Q Consensus        79 ~~~~~   83 (142)
                      ..+..
T Consensus       177 ~~~~~  181 (484)
T 3nyv_A          177 THFEA  181 (484)
T ss_dssp             HHBCC
T ss_pred             EEccc
Confidence            76543

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.28  E-value=4.1e-12  Score=90.75  Aligned_cols=69  Identities=30%  Similarity=0.487  Sum_probs=60.1

Q ss_pred             hheeeeeCCCc-----ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           11 LYLIFDVDPIR-----RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        11 ~~lv~e~~~~~-----~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .|+++||+.+.     ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+....
T Consensus       104 ~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~---ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~  177 (353)
T 3coi_A          104 FYLVMPFMQTDLQKIMGLKFSEEKIQYLVYQMLKGLKYIHSAG---VVHRDLKPGNLAVNEDCELKILDFGLARHAD  177 (353)
T ss_dssp             CEEEEECCSEEGGGTTTSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCCGGGEEECTTCCEEECSTTCTTC--
T ss_pred             EEEEeccccCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEeECCCCcEEEeecccccCCC
Confidence            48999997642     235899999999999999999999998   9999999999999999999999999886543

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.28  E-value=8.7e-12  Score=91.12  Aligned_cols=57  Identities=18%  Similarity=0.199  Sum_probs=52.3

Q ss_pred             ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           22 RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        22 ~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++...
T Consensus       205 ~~~l~~~~~~~i~~qi~~aL~~LH~~~---iiHrDiKp~NILl~~~~~~kL~DFG~a~~~  261 (413)
T 3dzo_A          205 HKSLVHHARLQLTLQVIRLLASLHHYG---LVHTYLRPVDIVLDQRGGVFLTGFEHLVRD  261 (413)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCGGGCEET
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCcccceEEEecCCeEEEEeccceeec
Confidence            455888899999999999999999999   999999999999999999999999997654

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.28  E-value=1.5e-12  Score=91.92  Aligned_cols=71  Identities=25%  Similarity=0.338  Sum_probs=61.5

Q ss_pred             hheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           11 LYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        11 ~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .|+++||+.+.          ...+++..+..++.+++.|+.|||+.+ ++++|+|+++.||+++.++.++++|||++..
T Consensus       109 ~~lv~e~~~g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~-~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~  187 (337)
T 3ll6_A          109 FLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQK-PPIIHRDLKVENLLLSNQGTIKLCDFGSATT  187 (337)
T ss_dssp             EEEEEECCSEEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSS-SCCBCCCCCGGGCEECTTSCEEBCCCTTCBC
T ss_pred             EEEEEEecCCCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCC-CCEEEccCCcccEEECCCCCEEEecCcccee
Confidence            68899998652          345999999999999999999999864 2389999999999999999999999999876


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       188 ~~  189 (337)
T 3ll6_A          188 IS  189 (337)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.27  E-value=3.3e-11  Score=85.65  Aligned_cols=70  Identities=27%  Similarity=0.508  Sum_probs=62.3

Q ss_pred             hhheeeeeCCCc----------------ccccCHHHHHHHHHHHHHHhhhhhc-cCCCceEecccCCCcEEeCCCCceEE
Q 043694           10 YLYLIFDVDPIR----------------RFILDWKTCIHIIQGITQGLLYLQE-YSKLIVIHQDLKASNILLDEDLKSKI   72 (142)
Q Consensus        10 ~~~lv~e~~~~~----------------~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~~l~~~nil~~~~~~~~l   72 (142)
                      ..|+|+||++++                ...+++..+..++.+++.|+.|||+ .+   ++|+|+++.||+++.++.+++
T Consensus       117 ~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~---i~H~dl~p~Nil~~~~~~~kl  193 (348)
T 2pml_X          117 EVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKN---ICHRDVKPSNILMDKNGRVKL  193 (348)
T ss_dssp             EEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSC---EECCCCCGGGEEECTTSCEEE
T ss_pred             eEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCC---EeecCCChHhEEEcCCCcEEE
Confidence            478899997652                3568999999999999999999998 88   999999999999999999999


Q ss_pred             ecccceeeee
Q 043694           73 SDFGLARIFV   82 (142)
Q Consensus        73 ~~fg~~~~~~   82 (142)
                      +|||.+....
T Consensus       194 ~dfg~~~~~~  203 (348)
T 2pml_X          194 SDFGESEYMV  203 (348)
T ss_dssp             CCCTTCEECB
T ss_pred             eccccccccc
Confidence            9999987653

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.27  E-value=1.2e-11  Score=85.47  Aligned_cols=70  Identities=27%  Similarity=0.396  Sum_probs=61.3

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC----ceEEecccc
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL----KSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~----~~~l~~fg~   77 (142)
                      ..|+|+||++++        ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++    .+++.|||.
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~  158 (283)
T 3bhy_A           82 DVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKR---IAHFDLKPENIMLLDKNVPNPRIKLIDFGI  158 (283)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCSSSSSCCEEECCCTT
T ss_pred             eEEEEEeecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCChHHEEEecCCCCCCceEEEeccc
Confidence            478999998753        245899999999999999999999998   99999999999998765    799999999


Q ss_pred             eeeee
Q 043694           78 ARIFV   82 (142)
Q Consensus        78 ~~~~~   82 (142)
                      +....
T Consensus       159 ~~~~~  163 (283)
T 3bhy_A          159 AHKIE  163 (283)
T ss_dssp             CEECC
T ss_pred             ceecc
Confidence            87654

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.27  E-value=1.2e-11  Score=86.67  Aligned_cols=71  Identities=21%  Similarity=0.304  Sum_probs=60.7

Q ss_pred             hhheeeee-CCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC-CCCceEEeccccee
Q 043694           10 YLYLIFDV-DPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD-EDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~-~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~-~~~~~~l~~fg~~~   79 (142)
                      ..|+++|+ ..++        ...+++..+..++.+++.|+.|+|+.+   ++|+|+++.||+++ .++.++++|||.+.
T Consensus       112 ~~~~v~e~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~kl~dfg~~~  188 (312)
T 2iwi_A          112 GFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHSRG---VVHRDIKDENILIDLRRGCAKLIDFGSGA  188 (312)
T ss_dssp             -CEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHT---EECCCCSGGGEEEETTTTEEEECCCSSCE
T ss_pred             eEEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCChhhEEEeCCCCeEEEEEcchhh
Confidence            46788887 4432        245899999999999999999999998   99999999999998 78899999999988


Q ss_pred             eeec
Q 043694           80 IFVK   83 (142)
Q Consensus        80 ~~~~   83 (142)
                      ....
T Consensus       189 ~~~~  192 (312)
T 2iwi_A          189 LLHD  192 (312)
T ss_dssp             ECCS
T ss_pred             hccc
Confidence            7654

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.27  E-value=5.7e-12  Score=88.89  Aligned_cols=70  Identities=30%  Similarity=0.471  Sum_probs=60.7

Q ss_pred             hheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC---ceEEeccccee
Q 043694           11 LYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL---KSKISDFGLAR   79 (142)
Q Consensus        11 ~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~---~~~l~~fg~~~   79 (142)
                      .|+|+||++++        ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++   .++++|||.+.
T Consensus        89 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~  165 (322)
T 2ycf_A           89 YYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENG---IIHRDLKPENVLLSSQEEDCLIKITDFGHSK  165 (322)
T ss_dssp             EEEEEECCTTEETHHHHSTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESSSSSSCCEEECCCTTCE
T ss_pred             eEEEEecCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHEEEecCCCCCeEEEccCccce
Confidence            68899998763        346899999999999999999999998   99999999999998654   49999999987


Q ss_pred             eeec
Q 043694           80 IFVK   83 (142)
Q Consensus        80 ~~~~   83 (142)
                      ....
T Consensus       166 ~~~~  169 (322)
T 2ycf_A          166 ILGE  169 (322)
T ss_dssp             ECCC
T ss_pred             eccc
Confidence            6543

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.26  E-value=2.4e-12  Score=92.10  Aligned_cols=69  Identities=23%  Similarity=0.335  Sum_probs=61.2

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhcc-CCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEY-SKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~-~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||+++++        ..+++..+..++.+++.|+.|||+. +   ++|+|+++.||+++.++.++++|||++..
T Consensus       105 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~  181 (360)
T 3eqc_A          105 EISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHK---IMHRDVKPSNILVNSRGEIKLCDFGVSGQ  181 (360)
T ss_dssp             EEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHC---CCCSCCSGGGEEECTTCCEEECCCCCCHH
T ss_pred             EEEEEEECCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhCC---EEcCCccHHHEEECCCCCEEEEECCCCcc
Confidence            4789999987643        4589999999999999999999986 7   99999999999999999999999998764


Q ss_pred             e
Q 043694           81 F   81 (142)
Q Consensus        81 ~   81 (142)
                      .
T Consensus       182 ~  182 (360)
T 3eqc_A          182 L  182 (360)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.26  E-value=6.4e-12  Score=88.57  Aligned_cols=71  Identities=30%  Similarity=0.396  Sum_probs=61.2

Q ss_pred             hhhheeeeeCCCc----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccce
Q 043694            9 LYLYLIFDVDPIR----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA   78 (142)
Q Consensus         9 ~~~~lv~e~~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~   78 (142)
                      ...|+|+||++++          ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.+++.|||.+
T Consensus       100 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~NIl~~~~~~~kl~Dfg~~  176 (326)
T 2x7f_A          100 DQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHK---VIHRDIKGQNVLLTENAEVKLVDFGVS  176 (326)
T ss_dssp             CEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTTCCEEECCCTTT
T ss_pred             ceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCcHHHEEEcCCCCEEEeeCcCc
Confidence            3578999998763          246899999999999999999999998   999999999999999999999999987


Q ss_pred             eeee
Q 043694           79 RIFV   82 (142)
Q Consensus        79 ~~~~   82 (142)
                      ....
T Consensus       177 ~~~~  180 (326)
T 2x7f_A          177 AQLD  180 (326)
T ss_dssp             C---
T ss_pred             eecC
Confidence            7653

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.26  E-value=5e-12  Score=88.65  Aligned_cols=71  Identities=32%  Similarity=0.490  Sum_probs=61.0

Q ss_pred             hhhheeeeeCCC------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC-CCCceEEecccceeee
Q 043694            9 LYLYLIFDVDPI------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD-EDLKSKISDFGLARIF   81 (142)
Q Consensus         9 ~~~~lv~e~~~~------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~-~~~~~~l~~fg~~~~~   81 (142)
                      ...|+|+||+++      ....+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++ .+..++++|||.+...
T Consensus        95 ~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~~  171 (320)
T 2i6l_A           95 NSVYIVQEYMETDLANVLEQGPLLEEHARLFMYQLLRGLKYIHSAN---VLHRDLKPANLFINTEDLVLKIGDFGLARIM  171 (320)
T ss_dssp             SEEEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEEETTTTEEEECCCTTCBCC
T ss_pred             CceeEEeeccCCCHHHHhhcCCccHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEcCCCCeEEEccCcccccc
Confidence            356899999874      2356899999999999999999999998   99999999999997 5678999999998765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       172 ~  172 (320)
T 2i6l_A          172 D  172 (320)
T ss_dssp             -
T ss_pred             C
Confidence            3

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=99.26  E-value=6.9e-12  Score=87.35  Aligned_cols=69  Identities=32%  Similarity=0.492  Sum_probs=60.7

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||+.++         ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++.++++|||.+..
T Consensus        76 ~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~kl~dfg~~~~  152 (299)
T 2r3i_A           76 KLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARA  152 (299)
T ss_dssp             EEEEEEECCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECSTTHHHH
T ss_pred             ceEEEEEcccCCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCCHHHeEEcCCCCEEECcchhhhh
Confidence            578999997641         145889999999999999999999998   99999999999999999999999998765


Q ss_pred             e
Q 043694           81 F   81 (142)
Q Consensus        81 ~   81 (142)
                      .
T Consensus       153 ~  153 (299)
T 2r3i_A          153 F  153 (299)
T ss_dssp             H
T ss_pred             c
Confidence            4

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.25  E-value=8.1e-12  Score=85.64  Aligned_cols=71  Identities=18%  Similarity=0.342  Sum_probs=59.8

Q ss_pred             hhhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccce
Q 043694            9 LYLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLA   78 (142)
Q Consensus         9 ~~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~   78 (142)
                      ...|+++||+++++          ..+++..+..++.|++.|+.|||+.+ ++++|+|+++.||+++.++..++.+|+++
T Consensus        82 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~-~~i~H~dikp~Nil~~~~~~~~l~~~~~~  160 (271)
T 3kmu_A           82 PHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLE-PLIPRHALNSRSVMIDEDMTARISMADVK  160 (271)
T ss_dssp             SSCEEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSS-SCCTTCCCSGGGEEECTTSCEEEEGGGSC
T ss_pred             CCeEeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCC-CceecCCCccceEEEcCCcceeEEeccce
Confidence            35689999987632          25899999999999999999999864 34899999999999999999999888775


Q ss_pred             ee
Q 043694           79 RI   80 (142)
Q Consensus        79 ~~   80 (142)
                      ..
T Consensus       161 ~~  162 (271)
T 3kmu_A          161 FS  162 (271)
T ss_dssp             CT
T ss_pred             ee
Confidence            43

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.25  E-value=3.6e-12  Score=87.87  Aligned_cols=70  Identities=26%  Similarity=0.443  Sum_probs=62.3

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||+++++        ..+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.+++.|||.+...
T Consensus        85 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~  161 (276)
T 2h6d_A           85 DFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMM  161 (276)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHC---SSCCCCCGGGEEECTTSCEEECCCCGGGCC
T ss_pred             eEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCChhhEEECCCCCEEEeeccccccc
Confidence            4789999987632        45899999999999999999999998   999999999999999999999999988765


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       162 ~  162 (276)
T 2h6d_A          162 S  162 (276)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.25  E-value=3.6e-12  Score=88.93  Aligned_cols=67  Identities=24%  Similarity=0.397  Sum_probs=60.4

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ..|+|+||++++         ...+++..+..++.+++.|+.|+|+.+   ++|+|+++.||+++.++.++++|||++.
T Consensus        90 ~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  165 (302)
T 2j7t_A           90 KLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKR---IIHRDLKAGNVLMTLEGDIRLADFGVSA  165 (302)
T ss_dssp             CEEEEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTTSCEEECCCHHHH
T ss_pred             eEEEEEEeCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCC---cccCCCCHHHEEECCCCCEEEEECCCCc
Confidence            578999998763         355999999999999999999999998   9999999999999999999999999764

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.23  E-value=3.5e-12  Score=88.45  Aligned_cols=69  Identities=20%  Similarity=0.268  Sum_probs=60.0

Q ss_pred             hhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCc--------eEE
Q 043694           10 YLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLK--------SKI   72 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~--------~~l   72 (142)
                      ..|+|+||+++++         ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.        +++
T Consensus        86 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~~~~~kl  162 (289)
T 4fvq_A           86 ENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEENT---LIHGNVCAKNILLIREEDRKTGNPPFIKL  162 (289)
T ss_dssp             CCEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEEECCBGGGTBCCEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhCC---eECCCcCcceEEEecCCcccccccceeee
Confidence            4689999987632         33999999999999999999999999   999999999999987765        999


Q ss_pred             ecccceeee
Q 043694           73 SDFGLARIF   81 (142)
Q Consensus        73 ~~fg~~~~~   81 (142)
                      .|||.+...
T Consensus       163 ~Dfg~~~~~  171 (289)
T 4fvq_A          163 SDPGISITV  171 (289)
T ss_dssp             CCCCSCTTT
T ss_pred             ccCcccccc
Confidence            999987544

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.23  E-value=1.6e-12  Score=89.82  Aligned_cols=74  Identities=31%  Similarity=0.446  Sum_probs=60.6

Q ss_pred             hhhheeeeeCCCcc------------cccCHHHHHHHHHHHHHHhhhhhccC--CCceEecccCCCcEEeCCCCceEEec
Q 043694            9 LYLYLIFDVDPIRR------------FILDWKTCIHIIQGITQGLLYLQEYS--KLIVIHQDLKASNILLDEDLKSKISD   74 (142)
Q Consensus         9 ~~~~lv~e~~~~~~------------~~l~~~~~~~~~~~i~~~l~~lh~~~--~~~i~h~~l~~~nil~~~~~~~~l~~   74 (142)
                      ...|+|+||+++++            ..+++..+..++.+++.|+.|+|+.+  ..+++|+|+++.||+++.++.++++|
T Consensus        80 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~d  159 (279)
T 2w5a_A           80 TTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGD  159 (279)
T ss_dssp             TEEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECC
T ss_pred             ceEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEec
Confidence            45789999987632            23999999999999999999999875  23489999999999999999999999


Q ss_pred             ccceeeee
Q 043694           75 FGLARIFV   82 (142)
Q Consensus        75 fg~~~~~~   82 (142)
                      ||.+....
T Consensus       160 fg~~~~~~  167 (279)
T 2w5a_A          160 FGLARILN  167 (279)
T ss_dssp             CCHHHHC-
T ss_pred             Cchheeec
Confidence            99886554

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.22  E-value=1e-11  Score=91.34  Aligned_cols=70  Identities=31%  Similarity=0.533  Sum_probs=55.9

Q ss_pred             hhheeeeeCCC--------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC-----CCceEEeccc
Q 043694           10 YLYLIFDVDPI--------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE-----DLKSKISDFG   76 (142)
Q Consensus        10 ~~~lv~e~~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~-----~~~~~l~~fg   76 (142)
                      +.|+|+||+.+        ....+.+..+..++.|++.|+.|||+.+   ++|+|+++.||+++.     ...++++|||
T Consensus        92 ~~~lv~E~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlKp~NIll~~~~~~~~~~~kL~DFG  168 (432)
T 3p23_A           92 FQYIAIELCAATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSLN---IVHRDLKPHNILISMPNAHGKIKAMISDFG  168 (432)
T ss_dssp             EEEEEEECCSEEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHHTT---CCCCCCSTTSEEECCCBTTTBCCEEECCTT
T ss_pred             EEEEEEECCCCCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHCc---CEeCCCCHHHEEEecCCCCCceeEEEeccc
Confidence            57899999764        1233555566789999999999999998   999999999999942     2357899999


Q ss_pred             ceeeee
Q 043694           77 LARIFV   82 (142)
Q Consensus        77 ~~~~~~   82 (142)
                      ++....
T Consensus       169 ~a~~~~  174 (432)
T 3p23_A          169 LCKKLA  174 (432)
T ss_dssp             EEECC-
T ss_pred             ceeecc
Confidence            987654

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.22  E-value=7.1e-12  Score=87.69  Aligned_cols=70  Identities=30%  Similarity=0.484  Sum_probs=61.0

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEe---CCCCceEEecccce
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL---DEDLKSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~---~~~~~~~l~~fg~~   78 (142)
                      ..|+++||++++.        ..+++..+..++.+++.|+.|+|+.+   ++|+|+++.||++   +.++.++++|||.+
T Consensus        80 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~  156 (304)
T 2jam_A           80 HYYLVMQLVSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLHENG---IVHRDLKPENLLYLTPEENSKIMITDFGLS  156 (304)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCSCCGGGCEESSSSTTCCEEBCSCSTT
T ss_pred             EEEEEEEcCCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEEecCCCCCCEEEccCCcc
Confidence            4689999987642        45899999999999999999999998   9999999999999   67788999999987


Q ss_pred             eeee
Q 043694           79 RIFV   82 (142)
Q Consensus        79 ~~~~   82 (142)
                      ....
T Consensus       157 ~~~~  160 (304)
T 2jam_A          157 KMEQ  160 (304)
T ss_dssp             CCCC
T ss_pred             eecC
Confidence            6543

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.21  E-value=7.1e-12  Score=87.94  Aligned_cols=70  Identities=31%  Similarity=0.459  Sum_probs=58.7

Q ss_pred             hhheeeeeCCC--------cccccCHHHHHHHHHHHHHHhhhhhcc-CCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPI--------RRFILDWKTCIHIIQGITQGLLYLQEY-SKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~-~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||+..        ....+++..+..++.+++.|+.|||+. +   ++|+|+++.||+++.++.+++.|||.+..
T Consensus        98 ~~~lv~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~---i~H~dlkp~Nil~~~~~~~kl~dfg~~~~  174 (318)
T 2dyl_A           98 DVFIAMELMGTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKHG---VIHRDVKPSNILLDERGQIKLCDFGISGR  174 (318)
T ss_dssp             EEEEEECCCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCGGGEEECTTSCEEECCCTTC--
T ss_pred             cEEEEEeccCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhCC---EEeCCCCHHHEEECCCCCEEEEECCCchh
Confidence            46889998743        135689999999999999999999985 8   99999999999999999999999998865


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       175 ~~  176 (318)
T 2dyl_A          175 LV  176 (318)
T ss_dssp             --
T ss_pred             cc
Confidence            53

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.18  E-value=2.9e-11  Score=93.08  Aligned_cols=71  Identities=28%  Similarity=0.313  Sum_probs=60.7

Q ss_pred             hhhheeeeeCCCcc-----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC---ceEEec
Q 043694            9 LYLYLIFDVDPIRR-----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL---KSKISD   74 (142)
Q Consensus         9 ~~~~lv~e~~~~~~-----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~---~~~l~~   74 (142)
                      ...|+|+||+++++           ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.++   .++++|
T Consensus        91 ~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~g---IVHrDLKP~NILl~~~g~~~~vKL~D  167 (676)
T 3qa8_A           91 DLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENR---IIHRDLKPENIVLQPGPQRLIHKIID  167 (676)
T ss_dssp             SSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTT---BCCCCCCSTTEEEECCSSSCEEEECS
T ss_pred             CeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCCHHHeEeecCCCceeEEEcc
Confidence            45689999987632           25899999999999999999999998   99999999999998654   389999


Q ss_pred             ccceeeee
Q 043694           75 FGLARIFV   82 (142)
Q Consensus        75 fg~~~~~~   82 (142)
                      ||.+....
T Consensus       168 FG~a~~~~  175 (676)
T 3qa8_A          168 LGYAKELD  175 (676)
T ss_dssp             CCCCCBTT
T ss_pred             cccccccc
Confidence            99987654

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.17  E-value=1.4e-11  Score=86.54  Aligned_cols=68  Identities=35%  Similarity=0.524  Sum_probs=56.8

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+++||++++         ...+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++ ++.++++|||++..
T Consensus       103 ~~~iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~  178 (319)
T 2y4i_B          103 HLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKG---ILHKDLKSKNVFYD-NGKVVITDFGLFSI  178 (319)
T ss_dssp             CEEEECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHTT---CCCCCCCSTTEEEC---CCEECCCSCCC-
T ss_pred             ceEEEeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccCCChhhEEEe-CCCEEEeecCCccc
Confidence            468889987652         235899999999999999999999998   99999999999998 67899999998664


Q ss_pred             e
Q 043694           81 F   81 (142)
Q Consensus        81 ~   81 (142)
                      .
T Consensus       179 ~  179 (319)
T 2y4i_B          179 S  179 (319)
T ss_dssp             -
T ss_pred             c
Confidence            3

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.14  E-value=3.1e-11  Score=88.74  Aligned_cols=71  Identities=30%  Similarity=0.542  Sum_probs=54.2

Q ss_pred             hhheeeeeCCCc-------ccc-------cCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC--------
Q 043694           10 YLYLIFDVDPIR-------RFI-------LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED--------   67 (142)
Q Consensus        10 ~~~lv~e~~~~~-------~~~-------l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~--------   67 (142)
                      +.|+|+||+.++       ...       .++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.+        
T Consensus        83 ~~~lv~E~~~gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDLkp~NILl~~~~~~~~~~~  159 (434)
T 2rio_A           83 FLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLK---IIHRDLKPQNILVSTSSRFTADQQ  159 (434)
T ss_dssp             EEEEEECCCSEEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEECCHHHHSCCT
T ss_pred             eEEEEEecCCCCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCC---ccccCCChHhEEEecCcccccccc
Confidence            578999998531       000       122344679999999999999998   9999999999999643        


Q ss_pred             -----CceEEecccceeeeec
Q 043694           68 -----LKSKISDFGLARIFVK   83 (142)
Q Consensus        68 -----~~~~l~~fg~~~~~~~   83 (142)
                           ..++++|||++.....
T Consensus       160 ~~~~~~~~kL~DFG~a~~~~~  180 (434)
T 2rio_A          160 TGAENLRILISDFGLCKKLDS  180 (434)
T ss_dssp             TCCCSCEEEECCCTTCEECCC
T ss_pred             cCCCceEEEEcccccceecCC
Confidence                 4799999999887643

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.13  E-value=4.7e-11  Score=83.24  Aligned_cols=66  Identities=8%  Similarity=-0.171  Sum_probs=55.1

Q ss_pred             hhhheeeeeCCCcc------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccc
Q 043694            9 LYLYLIFDVDPIRR------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus         9 ~~~~lv~e~~~~~~------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      ...|+|+||++++.      ......+...++.|++.|+.|+|+.+   ++|+|+++.||+++.++..++.+++.
T Consensus       104 ~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~i~~ql~~aL~~lH~~g---ivH~Dikp~NIll~~~g~~kl~~~~~  175 (286)
T 3uqc_A          104 AGGLVVAEWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAHRAG---VALSIDHPSRVRVSIDGDVVLAYPAT  175 (286)
T ss_dssp             TEEEEEEECCCEEEHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEEETTSCEEECSCCC
T ss_pred             CcEEEEEEecCCCCHHHHHhcCCChHHHHHHHHHHHHHHHHHHHCC---CccCCCCcccEEEcCCCCEEEEeccc
Confidence            35789999987532      12456678889999999999999998   99999999999999999999886554

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.11  E-value=5.8e-11  Score=82.39  Aligned_cols=70  Identities=29%  Similarity=0.494  Sum_probs=60.0

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC---CceEEecccce
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED---LKSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~---~~~~l~~fg~~   78 (142)
                      ..|+++||++++.        ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.+   ..+++.|||.+
T Consensus        95 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~  171 (287)
T 2wei_A           95 SFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLS  171 (287)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESCSSTTCCEEECSTTGG
T ss_pred             eEEEEEEccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCChhhEEEecCCCcccEEEeccCcc
Confidence            4688999987642        46899999999999999999999998   9999999999999653   46999999987


Q ss_pred             eeee
Q 043694           79 RIFV   82 (142)
Q Consensus        79 ~~~~   82 (142)
                      ....
T Consensus       172 ~~~~  175 (287)
T 2wei_A          172 TCFQ  175 (287)
T ss_dssp             GTBC
T ss_pred             eeec
Confidence            6543

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.08  E-value=1e-10  Score=81.58  Aligned_cols=69  Identities=13%  Similarity=0.129  Sum_probs=58.3

Q ss_pred             hhheeeeeCCCccc-ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           10 YLYLIFDVDPIRRF-ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        10 ~~~lv~e~~~~~~~-~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      ..|+|+||+++++. .+.......++.|++.|+.|+|+.+   ++|+|+++.||+++ ++.++++|||++....
T Consensus       174 ~~~lvmE~~~g~~L~~l~~~~~~~i~~qi~~~l~~lH~~g---iiHrDlkp~NILl~-~~~vkl~DFG~a~~~~  243 (282)
T 1zar_A          174 GNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHRG---IVHGDLSQYNVLVS-EEGIWIIDFPQSVEVG  243 (282)
T ss_dssp             TTEEEEECCCCEEGGGCCCSCHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEEEE-TTEEEECCCTTCEETT
T ss_pred             ceEEEEEecCCCcHHHcchhhHHHHHHHHHHHHHHHHHCC---CEeCCCCHHHEEEE-CCcEEEEECCCCeECC
Confidence            46899999876432 1444556689999999999999998   99999999999999 9999999999987553

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=98.90  E-value=5e-10  Score=84.54  Aligned_cols=68  Identities=26%  Similarity=0.284  Sum_probs=56.9

Q ss_pred             hhheeeeeCCCcccc--cCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeeecC
Q 043694           10 YLYLIFDVDPIRRFI--LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD   84 (142)
Q Consensus        10 ~~~lv~e~~~~~~~~--l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~~~   84 (142)
                      ..|+|+||+++++..  +..  +..++.|++.++.|||+.+   ++|+|+++.||+++.  .++++|||+++.....
T Consensus       413 ~~~lVmE~~~ggsL~~~l~~--~~~i~~qi~~aL~~LH~~g---IiHrDiKp~NILl~~--~~kL~DFGla~~~~~~  482 (540)
T 3en9_A          413 NKRIMMSYINGKLAKDVIED--NLDIAYKIGEIVGKLHKND---VIHNDLTTSNFIFDK--DLYIIDFGLGKISNLD  482 (540)
T ss_dssp             TTEEEEECCCSEEHHHHSTT--CTHHHHHHHHHHHHHHHTT---EECTTCCTTSEEESS--SEEECCCTTCEECCCH
T ss_pred             ccEEEEECCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHCc---CccCCCCHHHEEECC--eEEEEECccCEECCCc
Confidence            468999999865321  211  5678999999999999998   999999999999998  9999999999887543

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=98.84  E-value=2.1e-09  Score=73.86  Aligned_cols=68  Identities=21%  Similarity=0.176  Sum_probs=54.4

Q ss_pred             hhheeeeeCCC-c----c-----cccCHHHHHHHHHHHHHHhhhhh-ccCCCceEecccCCCcEEeCCCCceEEecccce
Q 043694           10 YLYLIFDVDPI-R----R-----FILDWKTCIHIIQGITQGLLYLQ-EYSKLIVIHQDLKASNILLDEDLKSKISDFGLA   78 (142)
Q Consensus        10 ~~~lv~e~~~~-~----~-----~~l~~~~~~~~~~~i~~~l~~lh-~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~   78 (142)
                      ..++||||+.. +    .     ...++.....++.+++.++.|+| ..+   ++|+|+++.||+++.  .+++.|||++
T Consensus       142 ~~~lVmE~~g~~g~~~~~L~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~g---ivHrDlkp~NILl~~--~~~liDFG~a  216 (258)
T 1zth_A          142 KNVLLMEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAE---LVHADLSEYNIMYID--KVYFIDMGQA  216 (258)
T ss_dssp             TTEEEEECCEETTEECCBHHHHGGGGGGSCHHHHHHHHHHHHHHHHHTSC---EECSSCSTTSEEESS--SEEECCCTTC
T ss_pred             CCEEEEEecCCCCCccccHHHHhhccChHHHHHHHHHHHHHHHHHHHHCC---EEeCCCCHHHEEEcC--cEEEEECccc
Confidence            35799999842 1    0     01223466788999999999999 888   999999999999987  8999999998


Q ss_pred             eeee
Q 043694           79 RIFV   82 (142)
Q Consensus        79 ~~~~   82 (142)
                      ....
T Consensus       217 ~~~~  220 (258)
T 1zth_A          217 VTLR  220 (258)
T ss_dssp             EETT
T ss_pred             ccCC
Confidence            7653

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=98.27  E-value=5.4e-07  Score=65.49  Aligned_cols=66  Identities=17%  Similarity=0.168  Sum_probs=50.9

Q ss_pred             heeeeeCCCcccc--cCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC----------ceEEeccccee
Q 043694           12 YLIFDVDPIRRFI--LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL----------KSKISDFGLAR   79 (142)
Q Consensus        12 ~lv~e~~~~~~~~--l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~----------~~~l~~fg~~~   79 (142)
                      ++||||+++....  .+......+..|++.++.++|..+   ++|+|+++.||+++.++          ...+.||+-+-
T Consensus       187 ~LVME~i~G~~L~~l~~~~~~~~l~~qll~~l~~lH~~g---IVHrDLKp~NILl~~dgd~~d~~~~~~~~~iID~~Q~V  263 (397)
T 4gyi_A          187 TIVMSLVDALPMRQVSSVPDPASLYADLIALILRLAKHG---LIHGDFNEFNILIREEKDAEDPSSITLTPIIIXFPQMV  263 (397)
T ss_dssp             EEEEECCSCEEGGGCCCCSCHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEEEEEEECSSCTTSEEEEEEECCCTTCE
T ss_pred             eEEEEecCCccHhhhcccHHHHHHHHHHHHHHHHHHHCC---CcCCCCCHHHEEEeCCCCcccccccccceEEEEeCCcc
Confidence            5899998764322  233344567899999999999998   99999999999997654          26788887654


Q ss_pred             e
Q 043694           80 I   80 (142)
Q Consensus        80 ~   80 (142)
                      .
T Consensus       264 ~  264 (397)
T 4gyi_A          264 S  264 (397)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=97.29  E-value=0.0009  Score=47.61  Aligned_cols=70  Identities=11%  Similarity=0.193  Sum_probs=55.2

Q ss_pred             hheeeeeCCCccc------ccCHHHHHHHHHHHHHHhhhhhccC------------------------------------
Q 043694           11 LYLIFDVDPIRRF------ILDWKTCIHIIQGITQGLLYLQEYS------------------------------------   48 (142)
Q Consensus        11 ~~lv~e~~~~~~~------~l~~~~~~~~~~~i~~~l~~lh~~~------------------------------------   48 (142)
                      .|+||||.++...      .++..++..++.+++..+..+|...                                    
T Consensus       116 ~~~vme~v~G~~l~~~~~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (359)
T 3dxp_A          116 AFYIMEFVSGRVLWDQSLPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIP  195 (359)
T ss_dssp             CEEEEECCCCBCCCCTTCTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCH
T ss_pred             eEEEEEecCCeecCCCccccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCCh
Confidence            6789999876433      3678888888999999999999621                                    


Q ss_pred             -------------------CCceEecccCCCcEEeCCCC--ceEEecccceee
Q 043694           49 -------------------KLIVIHQDLKASNILLDEDL--KSKISDFGLARI   80 (142)
Q Consensus        49 -------------------~~~i~h~~l~~~nil~~~~~--~~~l~~fg~~~~   80 (142)
                                         .+.++|+|+.+.|++++.+.  ...+.||+.+..
T Consensus       196 ~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          196 AMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             HHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred             HHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence                               24699999999999998664  368999987654

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=97.22  E-value=0.00035  Score=47.02  Aligned_cols=32  Identities=25%  Similarity=0.269  Sum_probs=26.4

Q ss_pred             ceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           51 IVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        51 ~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .++|+|+.+.|++++.+....+.||+.+....
T Consensus       185 ~l~HgDl~~~Nil~~~~~~~~liD~~~a~~g~  216 (264)
T 1nd4_A          185 VVTHGDACLPNIMVENGRFSGFIDCGRLGVAD  216 (264)
T ss_dssp             EEECSSCCGGGEEEETTEEEEECCCTTCEEEE
T ss_pred             EEECCCCCCCcEEEECCcEEEEEcchhcccCC
Confidence            38999999999999876666799999876543

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=97.02  E-value=0.00053  Score=46.53  Aligned_cols=72  Identities=19%  Similarity=0.178  Sum_probs=50.9

Q ss_pred             hhheeeeeCCCcccc---cCHHHHHHHHHHHHHHhhhhhcc---------------------------------------
Q 043694           10 YLYLIFDVDPIRRFI---LDWKTCIHIIQGITQGLLYLQEY---------------------------------------   47 (142)
Q Consensus        10 ~~~lv~e~~~~~~~~---l~~~~~~~~~~~i~~~l~~lh~~---------------------------------------   47 (142)
                      ..|+|||+.++....   .+......++.+++.++..+|.-                                       
T Consensus        84 ~~~lv~e~i~G~~l~~~~~~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (263)
T 3tm0_A           84 WSNLLMSEADGVLCSEEYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTP  163 (263)
T ss_dssp             EEEEEEECCSSEEHHHHCCTTTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCS
T ss_pred             ceEEEEEecCCeehhhccCCcccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcccccccccccccccc
Confidence            467999998775321   11223346778888888889871                                       


Q ss_pred             -----------------CCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           48 -----------------SKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        48 -----------------~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                                       ..+.++|+|+.+.|++++.+....+.||+.+..-
T Consensus       164 ~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~g  214 (263)
T 3tm0_A          164 FKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRA  214 (263)
T ss_dssp             SSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEEE
T ss_pred             CCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcccC
Confidence                             1145899999999999987666679999876543

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=96.28  E-value=0.014  Score=40.47  Aligned_cols=32  Identities=38%  Similarity=0.528  Sum_probs=26.3

Q ss_pred             CceEecccCCCcEEeCC--CCceEEecccceeee
Q 043694           50 LIVIHQDLKASNILLDE--DLKSKISDFGLARIF   81 (142)
Q Consensus        50 ~~i~h~~l~~~nil~~~--~~~~~l~~fg~~~~~   81 (142)
                      +.++|+|+.+.|++++.  +....+.||+.+..-
T Consensus       191 ~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~  224 (304)
T 3sg8_A          191 PCLIHNDFSSDHILFDTEKNTICGIIDFGDAAIS  224 (304)
T ss_dssp             CEEECSCCCGGGEEEETTTTEEEEECCCTTCEEE
T ss_pred             ceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccC
Confidence            45899999999999987  556789999877653

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=93.53  E-value=0.33  Score=34.15  Aligned_cols=32  Identities=13%  Similarity=0.317  Sum_probs=25.6

Q ss_pred             CCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           49 KLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        49 ~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.++|+|+.+.|++++.+....+.||..+..
T Consensus       221 ~~~l~HgDl~~~Nil~~~~~~~~vIDwe~a~~  252 (357)
T 3ats_A          221 EPVLLWGDARVGNVLYRDFQPVAVLDWEMVAL  252 (357)
T ss_dssp             CCEEECSSCSGGGEEEETTEEEEECCGGGCEE
T ss_pred             CceEEeCCCCCCeEEEeCCcEEEEEccccccc
Confidence            35689999999999998644578899987654

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=93.19  E-value=0.41  Score=33.17  Aligned_cols=32  Identities=34%  Similarity=0.401  Sum_probs=25.0

Q ss_pred             CCceEecccCCCcEEeCC----CCceEEecccceee
Q 043694           49 KLIVIHQDLKASNILLDE----DLKSKISDFGLARI   80 (142)
Q Consensus        49 ~~~i~h~~l~~~nil~~~----~~~~~l~~fg~~~~   80 (142)
                      .+.++|+|+.+.|++++.    +....+.||+.+..
T Consensus       189 ~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~  224 (306)
T 3tdw_A          189 TPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI  224 (306)
T ss_dssp             CCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred             CCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence            345799999999999987    33457999987654

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=90.71  E-value=0.42  Score=33.10  Aligned_cols=31  Identities=26%  Similarity=0.293  Sum_probs=26.3

Q ss_pred             CceEecccCCCcEEeCCCCceEEecccceee
Q 043694           50 LIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        50 ~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..++|+|+.+.|++++.+....+.||+.+..
T Consensus       222 ~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~  252 (346)
T 2q83_A          222 PNLCHQDYGTGNTLLGENEQIWVIDLDTVSF  252 (346)
T ss_dssp             CCEECSSCSTTSEEECGGGCEEECCCTTCEE
T ss_pred             CceecCCCCcccEEEeCCCcEEEEehhhccc
Confidence            4599999999999998777889999987643

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=83.66  E-value=0.65  Score=31.15  Aligned_cols=31  Identities=29%  Similarity=0.397  Sum_probs=25.8

Q ss_pred             ceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           51 IVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        51 ~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .++|+|+.+.|++++.+....+.||+.+..-
T Consensus       194 ~l~HGDl~~~Nil~~~~~~~~viDwe~a~~g  224 (272)
T 4gkh_A          194 VVTHGDFSLDNLIFDEGKLIGCIDVGRVGIA  224 (272)
T ss_dssp             EEECSCCCTTSEEEETTEEEEECCCTTCEEE
T ss_pred             EEEcCCCCCCeEEEECCeEEEEEECcccccC
Confidence            5799999999999987777778999876543

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=81.74  E-value=1.3  Score=32.03  Aligned_cols=30  Identities=20%  Similarity=0.392  Sum_probs=25.2

Q ss_pred             CceEecccCCCcEEeCCCCceEEecccceee
Q 043694           50 LIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        50 ~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..++|+|+.+.|++++.+. ..+.||+.+..
T Consensus       232 ~~liHGDl~~~Nil~~~~~-~~lID~e~a~~  261 (420)
T 2pyw_A          232 QALIHGDLHTGSVMVTQDS-TQVIDPEFSFY  261 (420)
T ss_dssp             CEEECSCCSGGGEEECSSC-EEECCCTTCEE
T ss_pred             CeEEecCCCCCcEEEeCCC-CEEEeCccccc
Confidence            4599999999999998765 88999977654

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=81.28  E-value=4.6  Score=27.97  Aligned_cols=32  Identities=25%  Similarity=0.526  Sum_probs=26.0

Q ss_pred             CCceEecccCCCcEEeCCC----CceEEecccceee
Q 043694           49 KLIVIHQDLKASNILLDED----LKSKISDFGLARI   80 (142)
Q Consensus        49 ~~~i~h~~l~~~nil~~~~----~~~~l~~fg~~~~   80 (142)
                      ...++|+|+.+.|++++.+    ....+.||+.+..
T Consensus       182 ~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~  217 (333)
T 3csv_A          182 DMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL  217 (333)
T ss_dssp             CCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred             CCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence            3469999999999999764    5788999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	142
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	6e-16
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	2e-13
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	3e-13
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	3e-13
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	5e-13
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	7e-13
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	9e-13
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	2e-12
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	2e-12
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	3e-12
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	4e-12
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	7e-12
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	1e-11
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	3e-11
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	5e-11
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	5e-11
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	7e-11
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	9e-11
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	5e-10
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	5e-10
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	6e-10
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	7e-10
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	1e-09
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	1e-09
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	2e-09
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	3e-09
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	4e-09
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	5e-09
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	5e-09
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	5e-09
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	9e-09
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	9e-09
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	9e-09
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	1e-08
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	2e-08
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	2e-08
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	2e-08
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	3e-08
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	4e-08
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	6e-08
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	6e-08
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	7e-08
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	7e-08
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	3e-07
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	3e-07
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	3e-07
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	6e-07
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	9e-07
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	1e-06
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	1e-06
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	2e-06
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	4e-06
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-05
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	1e-05
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	7e-05
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	7e-05
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	4e-04

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (171), Expect = 6e-16
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 15  FDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISD 74
           +    I     +    I I +   QG+ YL   S   +IH+DLK++NI L EDL  KI D
Sbjct: 91  YHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGD 147

Query: 75  FGLARIFVKDDLEANTNRIVGT 96
           FGLA +  +        ++ G+
Sbjct: 148 FGLATVKSRWSGSHQFEQLSGS 169

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.5 bits (154), Expect = 2e-13
 Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 9/77 (11%)

Query: 20  IRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           + +  L       +  G  QGL YL  ++   +IH+D+KA NILL E    K+ DFG A 
Sbjct: 107 VHKKPLQEVEIAAVTHGALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSAS 163

Query: 80  IFVKDDLEANTNRIVGT 96
           I       A  N  VGT
Sbjct: 164 IM------APANSFVGT 174

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (151), Expect = 3e-13
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 11/95 (11%)

Query: 10  YLYLIFDVDP--------IRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASN 61
             YL  +                +           +  G++YL     + + H+D+K  N
Sbjct: 77  IQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPEN 133

Query: 62  ILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           +LLDE    KISDFGLA +F  ++ E   N++ GT
Sbjct: 134 LLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 168

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.6 bits (151), Expect = 3e-13
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           L     + I + +  G+ YL E      +H+DL   N L+ E++  KI+DFGL+R     
Sbjct: 137 LSCAEQLCIARQVAAGMAYLSERK---FVHRDLATRNCLVGENMVVKIADFGLSRNIYSA 193

Query: 85  DLEANTNRIVGT 96
           D           
Sbjct: 194 DYYKADGNDAIP 205

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (150), Expect = 5e-13
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 11  LYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYL--QEYSKLIVIHQDLKASNILLDEDL 68
           L  +       R  LD +  + ++  +T  L     +      V+H+DLK +N+ LD   
Sbjct: 92  LASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQ 151

Query: 69  KSKISDFGLARIFVKDDLEANT 90
             K+ DFGLARI   D   A  
Sbjct: 152 NVKLGDFGLARILNHDTSFAKA 173

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (149), Expect = 7e-13
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 3/78 (3%)

Query: 13  LIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKI 72
            +  V       L       + +     L YL +     +IH+DLKA NIL   D   K+
Sbjct: 95  AVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNK---IIHRDLKAGNILFTLDGDIKL 151

Query: 73  SDFGLARIFVKDDLEANT 90
           +DFG++    +     ++
Sbjct: 152 ADFGVSAKNTRTIQRRDS 169

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (149), Expect = 9e-13
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           +   +  +    +   + +GL YL    K  ++H+D+K SNIL++   + K+ DFG++  
Sbjct: 97  KAGRIPEQILGKVSIAVIKGLTYL--REKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQ 154

Query: 81  FVKDDLEANTNRIVGTQE 98
            +        N  VGT+ 
Sbjct: 155 LIDS----MANSFVGTRS 168

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 2e-12
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 14/104 (13%)

Query: 7   VQLYLYLIFDV-------DPIRRFILDWKTCIHIIQGITQGLLYLQE-----YSKLIVIH 54
               L+L+ D        D + R+ +  +  I +      GL +L         K  + H
Sbjct: 72  TWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAH 131

Query: 55  QDLKASNILLDEDLKSKISDFGLARIF--VKDDLEANTNRIVGT 96
           +DLK+ NIL+ ++    I+D GLA       D ++   N  VGT
Sbjct: 132 RDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGT 175

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (147), Expect = 2e-12
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 24  ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVK 83
           +L ++  +     + +G+ +L+  S    +H+DL A N+L+      KI DFGLAR  + 
Sbjct: 160 VLTFEDLLCFAYQVAKGMEFLEFKS---CVHRDLAARNVLVTHGKVVKICDFGLARDIMS 216

Query: 84  DDLEANTNRIVGT 96
           D            
Sbjct: 217 DSNYVVRGNARLP 229

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (144), Expect = 3e-12
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 18  DPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGL 77
           + + +  L  +  I     + +G+ +L        IH+DL A NILL E    KI DFGL
Sbjct: 124 EDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAARNILLSEKNVVKICDFGL 180

Query: 78  ARIFVKDDLEANTNRIVGT 96
           AR   KD            
Sbjct: 181 ARDIYKDPDYVRKGDARLP 199

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (144), Expect = 4e-12
 Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 15  FDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISD 74
            D     +  +  +  ++    I +G+ YL++     ++H+DL A N+L+      KI+D
Sbjct: 98  LDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITD 154

Query: 75  FGLARIFVKDDLEANTNRIVGT 96
           FGLA++   ++ E +       
Sbjct: 155 FGLAKLLGAEEKEYHAEGGKVP 176

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.0 bits (142), Expect = 7e-12
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 26  DWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDD 85
                + +++GI  G+ YL + +    +H+DL A NIL++ +L  K+SDFGL+R    D 
Sbjct: 126 TVIQLVGMLRGIAAGMKYLADMN---YVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDT 182

Query: 86  LEANTNRIVG 95
            +      +G
Sbjct: 183 SDPTYTSALG 192

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (141), Expect = 1e-11
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL-DEDLKSKISDFGLAR 79
           R  ++  K      + I +GL +L   +  I IH+DLK  NI +       KI D GLA 
Sbjct: 105 RFKVMKIKVLRSWCRQILKGLQFLHTRTPPI-IHRDLKCDNIFITGPTGSVKIGDLGLAT 163

Query: 80  IFVKDDLEANTNRIVGT 96
           +            ++GT
Sbjct: 164 LKRAS----FAKAVIGT 176

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (137), Expect = 3e-11
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
            D +     I  +   L Y        VIH+D+K  N+LL    + KI+DFG +      
Sbjct: 103 FDEQRTATYITELANALSYCHSKR---VIHRDIKPENLLLGSAGELKIADFGWSVHAPSS 159

Query: 85  DLEANTNRIVGT 96
                   + GT
Sbjct: 160 ----RRTTLCGT 167

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (136), Expect = 5e-11
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
               L     + +   I +G+ +++E +    IH+DL+A+NIL+ + L  KI+DFGLAR+
Sbjct: 102 SGIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARL 158

Query: 81  FVKDDLEANTN 91
              ++  A   
Sbjct: 159 IEDNEYTAREG 169

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (136), Expect = 5e-11
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 6/108 (5%)

Query: 2   LMLQTVQLYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASN 61
            + ++  L     F +       L  +  +H    + +G+ YL +      IH+DL A N
Sbjct: 101 FLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ---FIHRDLAARN 157

Query: 62  ILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGTQESYNLWKDGKGR 109
           IL+ E+  +KI+DFGL+R                      +       
Sbjct: 158 ILVGENYVAKIADFGLSRGQEVYV---KKTMGRLPVRWMAIESLNYSV 202

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (134), Expect = 7e-11
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 27  WKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
               + +   I  G+ Y++  +    +H+DL+A+NIL+ E+L  K++DFGLAR+   ++ 
Sbjct: 112 LPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEY 168

Query: 87  EANTNRIV 94
            A      
Sbjct: 169 TARQGAKF 176

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 9e-11
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
           LD +  +     + +G+ +L   +    IH+DL A NILL     +KI DFGLAR    D
Sbjct: 142 LDLEDLLSFSYQVAKGMAFLASKN---CIHRDLAARNILLTHGRITKICDFGLARDIKND 198

Query: 85  DLEANTNRIVGT 96
                       
Sbjct: 199 SNYVVKGNARLP 210

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.6 bits (128), Expect = 5e-10
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
            R  +     +++   I+  + YL    K   IH+DL A N L+ E+   K++DFGL+R+
Sbjct: 108 NRQEVSAVVLLYMATQISSAMEYL---EKKNFIHRDLAARNCLVGENHLVKVADFGLSRL 164

Query: 81  FVKDDLEANTN 91
              D   A+  
Sbjct: 165 MTGDTYTAHAG 175

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (128), Expect = 5e-10
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 14  IFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKIS 73
           + D    +R +   +T + +   + +G+ YL+E     VIH+DL A N L+ E+   K+S
Sbjct: 87  LSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVS 143

Query: 74  DFGLARIFVKDDLEANTNRIVGT 96
           DFG+ R FV DD   ++      
Sbjct: 144 DFGMTR-FVLDDQYTSSTGTKFP 165

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (128), Expect = 6e-10
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 10  YLYLIF---DVDPIRRFILDWK--TCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL 64
            LY          + ++I                + +  L+      +IH+DLK  NILL
Sbjct: 82  KLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILL 141

Query: 65  DEDLKSKISDFGLARIFVKDDLEANTNRIVG 95
           +ED+  +I+DFG A++   +  +A  N  VG
Sbjct: 142 NEDMHIQITDFGTAKVLSPESKQARANSFVG 172

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 53.1 bits (127), Expect = 7e-10
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
            +  L  K    I++ + + +  L + +   ++H+DLK  NILLD+D+  K++DFG +  
Sbjct: 103 EKVTLSEKETRKIMRALLEVICALHKLN---IVHRDLKPENILLDDDMNIKLTDFGFSCQ 159

Query: 81  FVKDDLEANTNRIVGT 96
               +       + GT
Sbjct: 160 LDPGE---KLREVCGT 172

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (126), Expect = 1e-09
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           +R  +       ++  ++ G+ YL+E +    +H+DL A N+LL     +KISDFGL++ 
Sbjct: 102 KREEIPVSNVAELLHQVSMGMKYLEEKN---FVHRDLAARNVLLVNRHYAKISDFGLSKA 158

Query: 81  FVKDDLEAN-TNRIVGT 96
              DD      +     
Sbjct: 159 LGADDSYYTARSAGKWP 175

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (125), Expect = 1e-09
 Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 15  FDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISD 74
            +     R     +  + + + + + + YL+       +H+DL A N L+++    K+SD
Sbjct: 87  LNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQ---FLHRDLAARNCLVNDQGVVKVSD 143

Query: 75  FGLARIFVKDDLEANTNRIVGT 96
           FGL+R  + D+  ++       
Sbjct: 144 FGLSRYVLDDEYTSSVG-SKFP 164

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 2e-09
 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 3/89 (3%)

Query: 2   LMLQTVQLYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASN 61
           +M+ T  +    +      +         + +++GI  G+ Y    + +  +H+DL A N
Sbjct: 84  MMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKY---LANMNYVHRDLAARN 140

Query: 62  ILLDEDLKSKISDFGLARIFVKDDLEANT 90
           IL++ +L  K+SDFGL+R+   D     T
Sbjct: 141 ILVNSNLVCKVSDFGLSRVLEDDPEATYT 169

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 3e-09
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           +   +  K  I ++  ++ G+ YL+E +    +H+DL A N+LL     +KISDFGL++ 
Sbjct: 100 QNRHVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKA 156

Query: 81  FVKDDLEANTN-RIVGT 96
              D+            
Sbjct: 157 LRADENYYKAQTHGKWP 173

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 4e-09
 Identities = 22/115 (19%), Positives = 49/115 (42%), Gaps = 5/115 (4%)

Query: 1   MLMLQTVQLYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKAS 60
            + +      L  +     +R++ LD  + I     ++  L YL+       +H+D+ A 
Sbjct: 81  PVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKR---FVHRDIAAR 137

Query: 61  NILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGTQESYNLWKDGKGRKLMDPS 115
           N+L+  +   K+ DFGL+R +++D      ++     + +   +    R+    S
Sbjct: 138 NVLVSSNDCVKLGDFGLSR-YMEDSTYYKASKGKLPIK-WMAPESINFRRFTSAS 190

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 5e-09
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 9/97 (9%)

Query: 10  YLYLIFDV------DPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNIL 63
            +YL+  +        ++   L      + +  I +GL Y+   +   V+H+DLK SN+L
Sbjct: 85  DVYLVTHLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIHSAN---VLHRDLKPSNLL 141

Query: 64  LDEDLKSKISDFGLARIFVKDDLEANTNRIVGTQESY 100
           L+     KI DFGLAR+   D               Y
Sbjct: 142 LNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWY 178

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (121), Expect = 5e-09
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 12/94 (12%)

Query: 10  YLYLIFDV-------DPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNI 62
            L+++ +        D +    +D      + +   Q L +L       VIH+D+K+ NI
Sbjct: 91  ELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNI 147

Query: 63  LLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           LL  D   K++DFG       +   +  + +VGT
Sbjct: 148 LLGMDGSVKLTDFGFCAQITPEQ--SKRSTMVGT 179

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 5e-09
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD 84
                 I +   I  G+ YL        +H+DL A N ++ ED   KI DFG+ R   + 
Sbjct: 130 PSLSKMIQMAGEIADGMAYLNANK---FVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET 186

Query: 85  DLEANTNRIVGTQE 98
           D      + +    
Sbjct: 187 DYYRKGGKGLLPVR 200

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 9e-09
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 7/94 (7%)

Query: 10  YLYLIFDVDP-----IRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL 64
            +YL+FD        +   +L   T   I + +   L  L    +  ++H+D+KA+N+L+
Sbjct: 91  SIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLI 150

Query: 65  DEDLKSKISDFGLARIF--VKDDLEANTNRIVGT 96
             D   K++DFGLAR F   K+         V T
Sbjct: 151 TRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVT 184

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 9e-09
 Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 7/109 (6%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           R  +   +          + +  L+      V+++D+K  N++LD+D   KI+DFGL + 
Sbjct: 98  RERVFTEERARFYGA---EIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKE 154

Query: 81  FVKDDLEANTNRIVGTQESYNLWKDGKGRKLMDPSLDDTHSSWKLLTCL 129
            + D   A      GT E                ++D       +   +
Sbjct: 155 GISDG--ATMKTFCGTPEYLAPEVLEDND--YGRAVDWWGLGVVMYEMM 199

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (119), Expect = 9e-09
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
            R +L     +     + + + YL+  +    +H+DL A N+L+ ED  +K+SDFGL + 
Sbjct: 96  GRSVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKE 152

Query: 81  F 81
            
Sbjct: 153 A 153

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (118), Expect = 1e-08
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
                D          I  GL +L       ++++DLK  NILLD+D   KI+DFG+ + 
Sbjct: 96  SCHKFDLSRATFYAAEIILGLQFLHSKG---IVYRDLKLDNILLDKDGHIKIADFGMCKE 152

Query: 81  FVKDDLEANTNRIVGTQE 98
            +  D  A TN   GT +
Sbjct: 153 NMLGD--AKTNTFCGTPD 168

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 2e-08
 Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 2   LMLQTVQLYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASN 61
            +       L   ++        L  K  +     + +G+ YL        IH+DL A N
Sbjct: 109 YLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKK---CIHRDLAARN 165

Query: 62  ILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           +L+ ED   KI+DFGLAR     D    T      
Sbjct: 166 VLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLP 200

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 49.3 bits (117), Expect = 2e-08
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 14  IFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILL--DEDLKSK 71
           +F+        +     +  ++ + +GL ++ E +    +H DLK  NI+       + K
Sbjct: 110 LFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENN---YVHLDLKPENIMFTTKRSNELK 166

Query: 72  ISDFGLARIF 81
           + DFGL    
Sbjct: 167 LIDFGLTAHL 176

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.0 bits (116), Expect = 2e-08
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           +  +            I  GL ++       V+++DLK +NILLDE    +ISD GLA  
Sbjct: 100 QHGVFSEADMRFYAAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACD 156

Query: 81  FVKD 84
           F K 
Sbjct: 157 FSKK 160

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.6 bits (115), Expect = 3e-08
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 27  WKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF 81
                       +  L L+      +I++DLK  NILLD++   KI+DFG A+  
Sbjct: 100 RFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYV 154

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 4e-08
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 6/96 (6%)

Query: 1   MLMLQTVQLYLYLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKAS 60
            L L    +   L   +D +    +  +T   ++  + +GL +L  +    V+H+DLK  
Sbjct: 89  KLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHR---VVHRDLKPQ 145

Query: 61  NILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
           NIL+    + K++DFGLARI+           +V T
Sbjct: 146 NILVTSSGQIKLADFGLARIYSFQM---ALTSVVVT 178

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 6e-08
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 13  LIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKI 72
            + +           K  I     + +G+   +  +    +H+DL A N +LDE    K+
Sbjct: 115 DLRNFIRNETHNPTVKDLIGFGLQVAKGM---KFLASKKFVHRDLAARNCMLDEKFTVKV 171

Query: 73  SDFGLARIFVKDDLEANTNR 92
           +DFGLAR     + ++  N+
Sbjct: 172 ADFGLARDMYDKEFDSVHNK 191

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (113), Expect = 6e-08
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 14  IFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKIS 73
           + D     +      T       + +G+ YL+       IH+DL A N+LL      KI 
Sbjct: 97  LLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKR---FIHRDLAARNLLLATRDLVKIG 153

Query: 74  DFGLARIFVKDDLEANTNRIVGTQESY 100
           DFGL R   ++D             ++
Sbjct: 154 DFGLMRALPQNDDHYVMQEHRKVPFAW 180

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 47.7 bits (113), Expect = 7e-08
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 15  FDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD--EDLKSKI 72
           FD      + +     I+ ++   +GL ++ E+S   ++H D+K  NI+ +  +    KI
Sbjct: 114 FDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHS---IVHLDIKPENIMCETKKASSVKI 170

Query: 73  SDFGLARIFVKDDL 86
            DFGLA     D++
Sbjct: 171 IDFGLATKLNPDEI 184

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (113), Expect = 7e-08
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD--EDLKSKISDFGLA 78
             F L+ +  +  +  + + L +L  ++   + H D++  NI+         KI +FG A
Sbjct: 95  SAFELNEREIVSYVHQVCEALQFLHSHN---IGHFDIRPENIIYQTRRSSTIKIIEFGQA 151

Query: 79  RIFVKDD 85
           R     D
Sbjct: 152 RQLKPGD 158

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 46.0 bits (108), Expect = 3e-07
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 20  IRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +    L+  T    +  +  G+ Y  +     V+H+DLK  N+L++ + + KI+DFGLAR
Sbjct: 92  VCEGGLESVTAKSFLLQLLNGIAYCHDRR---VLHRDLKPQNLLINREGELKIADFGLAR 148

Query: 80  IFVKDDLEANT 90
            F     +   
Sbjct: 149 AFGIPVRKYTH 159

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 3e-07
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 27  WKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDL 86
                 +   + Q L  L       V+H+DLK  N+L++ + + K+++FGLAR F     
Sbjct: 97  DLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPV- 155

Query: 87  EANTNRIVGTQESYNLWKDGKGRKLMDPSLD 117
                        Y       G KL   S+D
Sbjct: 156 --RCYSAEVVTLWYRPPDVLFGAKLYSTSID 184

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 3e-07
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 15/90 (16%)

Query: 8   QLYLYLIFDVDP-----------IRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQD 56
           ++YL L+ D  P             +  L        +  + + L Y+  +    + H+D
Sbjct: 91  EVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFG---ICHRD 147

Query: 57  LKASNILLDED-LKSKISDFGLARIFVKDD 85
           +K  N+LLD D    K+ DFG A+  V+ +
Sbjct: 148 IKPQNLLLDPDTAVLKLCDFGSAKQLVRGE 177

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.2 bits (106), Expect = 6e-07
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI 80
           R               I     YL       +I++DLK  N+L+D+    +++DFG A+ 
Sbjct: 134 RIGRFSEPHARFYAAQIVLTFEYLHSLD---LIYRDLKPENLLIDQQGYIQVTDFGFAKR 190

Query: 81  F 81
            
Sbjct: 191 V 191

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 9e-07
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 10  YLYLIFDVDPIRRFILDWKTCI-----HIIQGITQGLLYLQEYSKLIVIHQDLKASNILL 64
            + L+FD       ++     +     HI   +   L  L+   +  ++H+DLK +N+LL
Sbjct: 74  NISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLL 133

Query: 65  DEDLKSKISDFGLARIFVKD 84
           DE+   K++DFGLA+ F   
Sbjct: 134 DENGVLKLADFGLAKSFGSP 153

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 1e-06
 Identities = 20/66 (30%), Positives = 30/66 (45%)

Query: 20  IRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
           +    L       I   + Q L  L       V+H+DLK  N+L++ +   K++DFGLAR
Sbjct: 91  MDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 150

Query: 80  IFVKDD 85
            F    
Sbjct: 151 AFGVPV 156

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 1e-06
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 11/95 (11%)

Query: 10  YLYLIFDVDP--------IRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASN 61
           +LYLI  +          + +     +    +I  +   + YL +   +    +      
Sbjct: 81  HLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLY 140

Query: 62  ILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGT 96
             LDED K  ISDFGL+++     +    +   GT
Sbjct: 141 YSLDEDSKIMISDFGLSKMEDPGSV---LSTACGT 172

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (102), Expect = 2e-06
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 21  RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKS-KISDFGLAR 79
            R  L  +        + + + +        V+H+D+K  NIL+D +    K+ DFG   
Sbjct: 103 ERGALQEELARSFFWQVLEAVRHCHNCG---VLHRDIKDENILIDLNRGELKLIDFGSGA 159

Query: 80  IFVKDDLEANTNRIVGT 96
           +      +       GT
Sbjct: 160 LLK----DTVYTDFDGT 172

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.5 bits (99), Expect = 4e-06
 Identities = 14/95 (14%), Positives = 34/95 (35%), Gaps = 13/95 (13%)

Query: 12  YLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKS- 70
             + D+  +       KT     + +   +  + E S   ++++D+K  N L+       
Sbjct: 85  PSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKS---LVYRDIKPDNFLIGRPNSKN 141

Query: 71  ----KISDFGLARIFVKDDLEAN-----TNRIVGT 96
                + DFG+ + +     + +        + GT
Sbjct: 142 ANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGT 176

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 20/56 (35%), Positives = 35/56 (62%)

Query: 32  HIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLE 87
            +   + + +L L+   KL +I++D+K  NILLD +    ++DFGL++ FV D+ E
Sbjct: 130 EVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETE 185

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD---EDLKSKISDFGLARIF 81
              +    I++ I + + YL   +   + H+D+K  N+L      +   K++DFG A+  
Sbjct: 108 FTEREASEIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFAKET 164

Query: 82  VKDD 85
              +
Sbjct: 165 TSHN 168

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 38.6 bits (89), Expect = 7e-05
 Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 27  WKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR 79
            +    ++  I + +          ++H DL   N+L+  +    I DF  + 
Sbjct: 102 VENPDEVLDMILEEVAKFYHR---GIVHGDLSQYNVLVS-EEGIWIIDFPQSV 150

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 39.1 bits (90), Expect = 7e-05
 Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 8/106 (7%)

Query: 25  LDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD-EDLKSKISDFGLARIFVK 83
           L        +  I + L Y      + ++H+D+K  N+++D E  K ++ D+GLA  +  
Sbjct: 126 LTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHP 182

Query: 84  DDLEANTNRIVGTQESYNLWKDGKGRKLMDPSLDDTHSSWKLLTCL 129
                  N  V ++            ++ D SLD       L + +
Sbjct: 183 GQ---EYNVRVASRYFKGPELL-VDYQMYDYSLDMWSLGCMLASMI 224

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 4e-04
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 12  YLIFDVDPIRRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSK 71
            +  ++  + +  LD +   +++  +  G+ +L        IH+DLK SNI++  D   K
Sbjct: 103 LMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGI---IHRDLKPSNIVVKSDCTLK 159

Query: 72  ISDFGLARIFVKDDLEANTNRIVGT 96
           I DFGLAR      +       V T
Sbjct: 160 ILDFGLARTAGTSFM---MTPYVVT 181

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	142
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.78
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.77
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.77
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.76
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.75
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.75
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.74
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.74
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.74
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.73
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.71
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.71
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.7
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.7
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.69
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.68
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.68
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.68
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.68
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.67
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.67
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.67
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.67
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.67
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.67
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.67
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.67
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.66
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.66
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.66
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.65
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.65
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.63
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.63
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.63
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.62
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.62
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.61
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.61
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.6
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.59
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.58
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.57
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.57
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.57
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.56
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.53
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.51
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.48
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.48
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.47
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.47
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.45
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.44
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.41
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.4
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.33
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.3
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.02
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	98.97
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	84.13
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	84.11
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	83.53

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.1e-19  Score=127.68  Aligned_cols=130  Identities=23%  Similarity=0.317  Sum_probs=92.2

Q ss_pred             hhheeeeeCCCcc-------------------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccC
Q 043694           10 YLYLIFDVDPIRR-------------------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLK   58 (142)
Q Consensus        10 ~~~lv~e~~~~~~-------------------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   58 (142)
                      .+|+|+||+++++                               ..+++..+..++.|++.|+.|||+.+   ++|||++
T Consensus       115 ~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~---IiHRDlK  191 (325)
T d1rjba_         115 PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKS---CVHRDLA  191 (325)
T ss_dssp             SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTT---EEETTCS
T ss_pred             eEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCc
Confidence            5789999988643                               24899999999999999999999998   9999999


Q ss_pred             CCcEEeCCCCceEEecccceeeeecCcccccccccccchh--------------hhhhhhcCCc----------------
Q 043694           59 ASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGTQE--------------SYNLWKDGKG----------------  108 (142)
Q Consensus        59 ~~nil~~~~~~~~l~~fg~~~~~~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~----------------  108 (142)
                      +.||+++.++.+|++|||+++...............|++.              ..+.|+-|-+                
T Consensus       192 p~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~  271 (325)
T d1rjba_         192 ARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIP  271 (325)
T ss_dssp             GGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred             hhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCC
Confidence            9999999999999999999987654433222223334433              2344433311                


Q ss_pred             -----ceeecCCCCCCCCHHHHHHHHHHHHhccCccCCC
Q 043694          109 -----RKLMDPSLDDTHSSWKLLTCLQIALLCVQENSND  142 (142)
Q Consensus       109 -----~~~~d~~~~~~~~~~~~~~~~~i~~~C~~~~p~~  142 (142)
                           ..++........+......+.+++.+||+.||++
T Consensus       272 ~~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dP~~  310 (325)
T d1rjba_         272 VDANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRK  310 (325)
T ss_dssp             CSHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             HHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHcCCChhH
Confidence                 1122222233344455567889999999999964

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.1e-19  Score=121.36  Aligned_cols=130  Identities=24%  Similarity=0.302  Sum_probs=92.9

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+||||++++        ...+++..+..++.|++.|+.|||+.+   ++|||+++.||+++.++.+|++|||++..+
T Consensus        77 ~~~ivmEy~~gg~L~~~l~~~~~l~e~~~~~i~~qi~~al~ylH~~~---IiHrDiKp~NILl~~~~~~KL~DFG~a~~~  153 (271)
T d1nvra_          77 IQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVF  153 (271)
T ss_dssp             EEEEEEECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             eeEEEEeccCCCcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcC---CccCcccHHHEEECCCCCEEEccchhheee
Confidence            578999998864        345999999999999999999999999   999999999999999999999999999887


Q ss_pred             ecCcccccccccccchh---------------hhhhhhcCCccee-ec--------------------CCCCCCCCHHHH
Q 043694           82 VKDDLEANTNRIVGTQE---------------SYNLWKDGKGRKL-MD--------------------PSLDDTHSSWKL  125 (142)
Q Consensus        82 ~~~~~~~~~~~~~g~~~---------------~~~~~~~~~~~~~-~d--------------------~~~~~~~~~~~~  125 (142)
                      ............+||+.               ..+.|+.|-+... +.                    ............
T Consensus       154 ~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~s  233 (271)
T d1nvra_         154 RYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKID  233 (271)
T ss_dssp             EETTEECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHHHTTCTTSTTGGGSC
T ss_pred             ccCCccccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCccccCC
Confidence            65433232334556544               4566765522111 10                    000000111223


Q ss_pred             HHHHHHHHhccCccCCC
Q 043694          126 LTCLQIALLCVQENSND  142 (142)
Q Consensus       126 ~~~~~i~~~C~~~~p~~  142 (142)
                      ..+.++..+|++.||++
T Consensus       234 ~~~~~li~~~L~~dP~~  250 (271)
T d1nvra_         234 SAPLALLHKILVENPSA  250 (271)
T ss_dssp             HHHHHHHHHHSCSSTTT
T ss_pred             HHHHHHHHHHcCCChhH
Confidence            56778889999999974

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.3e-19  Score=125.80  Aligned_cols=130  Identities=24%  Similarity=0.275  Sum_probs=85.9

Q ss_pred             hhheeeeeCCCcc------------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC
Q 043694           10 YLYLIFDVDPIRR------------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD   65 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~   65 (142)
                      .+|+++||+++++                        ..+++.++..++.|++.|+.|||+.+   ++|||+++.||+++
T Consensus        92 ~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~---ivHrDlKp~NILl~  168 (299)
T d1ywna1          92 PLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAARNILLS  168 (299)
T ss_dssp             CCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEC
T ss_pred             eEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCC---CcCCcCCccceeEC
Confidence            4788999988643                        24899999999999999999999998   99999999999999


Q ss_pred             CCCceEEecccceeeeecCcccccccccccchh--------------hhhhhhcCCcc---------------------e
Q 043694           66 EDLKSKISDFGLARIFVKDDLEANTNRIVGTQE--------------SYNLWKDGKGR---------------------K  110 (142)
Q Consensus        66 ~~~~~~l~~fg~~~~~~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~---------------------~  110 (142)
                      .++.+|++|||+++...............||+.              ..+.|+-|-+.                     .
T Consensus       169 ~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~~~~~~  248 (299)
T d1ywna1         169 EKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCR  248 (299)
T ss_dssp             GGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHH
T ss_pred             CCCcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence            999999999999987654433222333445443              33444333111                     1


Q ss_pred             eecCCCCCCCCHHHHHHHHHHHHhccCccCCC
Q 043694          111 LMDPSLDDTHSSWKLLTCLQIALLCVQENSND  142 (142)
Q Consensus       111 ~~d~~~~~~~~~~~~~~~~~i~~~C~~~~p~~  142 (142)
                      .+........+......+.+++.+||+.||++
T Consensus       249 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~  280 (299)
T d1ywna1         249 RLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQ  280 (299)
T ss_dssp             HHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             HHhcCCCCCCCccCCHHHHHHHHHHcCCChhH
Confidence            11111222333344567889999999999964

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.6e-19  Score=121.17  Aligned_cols=72  Identities=32%  Similarity=0.583  Sum_probs=64.9

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ..|+|+||+++++          ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.+|++|||+++
T Consensus        81 ~~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~---ivHrDiKp~NIll~~~~~~Kl~DFGla~  157 (272)
T d1qpca_          81 PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLAR  157 (272)
T ss_dssp             SCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CeEEEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCccchhheeeecccceeeccccceE
Confidence            4689999998754          24899999999999999999999998   9999999999999999999999999998


Q ss_pred             eeecC
Q 043694           80 IFVKD   84 (142)
Q Consensus        80 ~~~~~   84 (142)
                      .+...
T Consensus       158 ~~~~~  162 (272)
T d1qpca_         158 LIEDN  162 (272)
T ss_dssp             ECSSS
T ss_pred             EccCC
Confidence            77543

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=2.2e-19  Score=124.08  Aligned_cols=129  Identities=22%  Similarity=0.306  Sum_probs=91.7

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ..|+++||++++.          ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.+|++|||+++
T Consensus        87 ~~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~---iiHrDlKp~NILl~~~~~~Kl~DFG~a~  163 (287)
T d1opja_          87 PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSR  163 (287)
T ss_dssp             SCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCCCTT
T ss_pred             eeEEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCC---cccCccccCeEEECCCCcEEEcccccee
Confidence            5789999988743          46899999999999999999999998   9999999999999999999999999998


Q ss_pred             eeecCcccccccccccch-----h---------hhhhhhcCC--------------------cceeecCCCCCCCCHHHH
Q 043694           80 IFVKDDLEANTNRIVGTQ-----E---------SYNLWKDGK--------------------GRKLMDPSLDDTHSSWKL  125 (142)
Q Consensus        80 ~~~~~~~~~~~~~~~g~~-----~---------~~~~~~~~~--------------------~~~~~d~~~~~~~~~~~~  125 (142)
                      .......... ....|++     +         ..+.|+-|-                    +.+.+........+....
T Consensus       164 ~~~~~~~~~~-~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~  242 (287)
T d1opja_         164 LMTGDTYTAH-AGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCP  242 (287)
T ss_dssp             TCCSSSSEEE-TTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCTTCC
T ss_pred             ecCCCCceee-ccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCCCCCCCccch
Confidence            7654322111 1112221     1         233343321                    112223333334444455


Q ss_pred             HHHHHHHHhccCccCCC
Q 043694          126 LTCLQIALLCVQENSND  142 (142)
Q Consensus       126 ~~~~~i~~~C~~~~p~~  142 (142)
                      ..+.+++.+||+.||++
T Consensus       243 ~~l~~li~~cl~~dP~~  259 (287)
T d1opja_         243 EKVYELMRACWQWNPSD  259 (287)
T ss_dssp             HHHHHHHHHHTCSSGGG
T ss_pred             HHHHHHHHHHcCCCHhH
Confidence            67889999999999964

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=3.2e-19  Score=123.97  Aligned_cols=71  Identities=30%  Similarity=0.506  Sum_probs=58.5

Q ss_pred             hhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||++++.         ..+++.++..++.|++.|+.|||+.+   ++|+|+++.||+++.++.+|++|||+++.
T Consensus       101 ~~~iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHrDlKp~NILl~~~~~~Kl~DFGla~~  177 (299)
T d1jpaa_         101 PVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMN---YVHRDLAARNILVNSNLVCKVSDFGLSRF  177 (299)
T ss_dssp             SCEEEEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCC-----
T ss_pred             EEEEEEEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHhhCC---CccCccccceEEECCCCcEEECCcccceE
Confidence            5799999998743         45999999999999999999999998   99999999999999999999999999987


Q ss_pred             eec
Q 043694           81 FVK   83 (142)
Q Consensus        81 ~~~   83 (142)
                      +..
T Consensus       178 ~~~  180 (299)
T d1jpaa_         178 LED  180 (299)
T ss_dssp             ---
T ss_pred             ccC
Confidence            653

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4.2e-19  Score=122.10  Aligned_cols=71  Identities=37%  Similarity=0.503  Sum_probs=62.3

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+|+|+||++++         ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.+|++|||+++.
T Consensus        77 ~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~---ivHrDlKp~NiLl~~~~~~Kl~DFGla~~  153 (276)
T d1uwha_          77 QLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATV  153 (276)
T ss_dssp             SCEEEEECCCEEEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTSSEEECCCCCSCC
T ss_pred             EEEEEEecCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhcCC---EeccccCHHHEEEcCCCCEEEccccceee
Confidence            478999998863         245999999999999999999999998   99999999999999999999999999876


Q ss_pred             eec
Q 043694           81 FVK   83 (142)
Q Consensus        81 ~~~   83 (142)
                      ...
T Consensus       154 ~~~  156 (276)
T d1uwha_         154 KSR  156 (276)
T ss_dssp             ---
T ss_pred             ccc
Confidence            643

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1e-18  Score=120.44  Aligned_cols=130  Identities=23%  Similarity=0.331  Sum_probs=86.0

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+++||+.++         ...+++.++..++.|++.|+.|||+.+   ++|+|+++.||+++.++.+|++|||+++.
T Consensus        83 ~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH~~~---iiHrDlKp~NILl~~~~~~Kl~DFGla~~  159 (283)
T d1mqba_          83 PMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMN---YVHRDLAARNILVNSNLVCKVSDFGLSRV  159 (283)
T ss_dssp             SEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCCCC---
T ss_pred             ceEEEEEecccCcchhhhhcccccccHHHHHHHHHHHHHhhhhccccc---cccCccccceEEECCCCeEEEcccchhhc
Confidence            478899998763         256999999999999999999999998   99999999999999999999999999987


Q ss_pred             eecCcccc-cccccccch-----h---------hhhhhhcC----------C----------cceeecCCCCCCCCHHHH
Q 043694           81 FVKDDLEA-NTNRIVGTQ-----E---------SYNLWKDG----------K----------GRKLMDPSLDDTHSSWKL  125 (142)
Q Consensus        81 ~~~~~~~~-~~~~~~g~~-----~---------~~~~~~~~----------~----------~~~~~d~~~~~~~~~~~~  125 (142)
                      +....... ......|++     +         ..+.|+-|          .          +...+........+.+..
T Consensus       160 ~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  239 (283)
T d1mqba_         160 LEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCP  239 (283)
T ss_dssp             --------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTCB
T ss_pred             ccCCCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCCHHHHHHHHhccCCCCCchhhH
Confidence            65432111 111122222     1         23333222          1          112233333344455556


Q ss_pred             HHHHHHHHhccCccCCC
Q 043694          126 LTCLQIALLCVQENSND  142 (142)
Q Consensus       126 ~~~~~i~~~C~~~~p~~  142 (142)
                      ..+.+++.+||+.||++
T Consensus       240 ~~l~~li~~cl~~~p~~  256 (283)
T d1mqba_         240 SAIYQLMMQCWQQERAR  256 (283)
T ss_dssp             HHHHHHHHHHTCSSTTT
T ss_pred             HHHHHHHHHHCcCCHhH
Confidence            78899999999999974

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=9.9e-19  Score=120.25  Aligned_cols=129  Identities=20%  Similarity=0.308  Sum_probs=90.1

Q ss_pred             hheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           11 LYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        11 ~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .|+|+||+++++        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++..+++|||+++.+.
T Consensus        82 ~~lvmE~~~~g~L~~~l~~~~~l~~~~~~~i~~qi~~gl~ylH~~~---iiHrDlKp~Nill~~~~~~kl~DFGla~~~~  158 (277)
T d1xbba_          82 WMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALR  158 (277)
T ss_dssp             EEEEEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCCTTCEECC
T ss_pred             EEEEEEcCCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHhhHHhCC---cccCCCcchhhcccccCcccccchhhhhhcc
Confidence            579999998743        55999999999999999999999998   9999999999999999999999999998765


Q ss_pred             cCcccc-cccccccchh--------------hhhhhhcC----------C----------cceeecCCCCCCCCHHHHHH
Q 043694           83 KDDLEA-NTNRIVGTQE--------------SYNLWKDG----------K----------GRKLMDPSLDDTHSSWKLLT  127 (142)
Q Consensus        83 ~~~~~~-~~~~~~g~~~--------------~~~~~~~~----------~----------~~~~~d~~~~~~~~~~~~~~  127 (142)
                      ...... ......|++.              ..+.|+-|          .          +...+........+......
T Consensus       159 ~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~  238 (277)
T d1xbba_         159 ADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPRE  238 (277)
T ss_dssp             TTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHH
T ss_pred             ccccccccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHH
Confidence            432211 1112233322              22333222          1          11112222223344444567


Q ss_pred             HHHHHHhccCccCCC
Q 043694          128 CLQIALLCVQENSND  142 (142)
Q Consensus       128 ~~~i~~~C~~~~p~~  142 (142)
                      +.+++.+||+.||++
T Consensus       239 ~~~li~~cl~~dp~~  253 (277)
T d1xbba_         239 MYDLMNLCWTYDVEN  253 (277)
T ss_dssp             HHHHHHHHTCSSTTT
T ss_pred             HHHHHHHHcCCCHhH
Confidence            888999999999974

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.3e-18  Score=120.18  Aligned_cols=72  Identities=31%  Similarity=0.492  Sum_probs=64.6

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+||||++++         ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.+|++|||+++.
T Consensus        82 ~~~lvmE~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH~~~---iiHrDlKp~Nill~~~~~~Kl~DFGla~~  158 (285)
T d1u59a_          82 ALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKN---FVHRDLAARNVLLVNRHYAKISDFGLSKA  158 (285)
T ss_dssp             SEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred             eEEEEEEeCCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCcCchhheeeccCCceeeccchhhhc
Confidence            368999998864         245999999999999999999999998   99999999999999999999999999987


Q ss_pred             eecC
Q 043694           81 FVKD   84 (142)
Q Consensus        81 ~~~~   84 (142)
                      +...
T Consensus       159 ~~~~  162 (285)
T d1u59a_         159 LGAD  162 (285)
T ss_dssp             CTTC
T ss_pred             cccc
Confidence            6543

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=6.3e-19  Score=120.36  Aligned_cols=72  Identities=32%  Similarity=0.517  Sum_probs=59.2

Q ss_pred             hhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||+++++         ..+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.+|++|||+++.
T Consensus        74 ~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~~~---iiHrDlKp~Nill~~~~~~Kl~DFGla~~  150 (263)
T d1sm2a_          74 PICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRF  150 (263)
T ss_dssp             SCEEEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCTTCSGGGEEECGGGCEEECSCC----
T ss_pred             ceEEEEEecCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHhhhccc---eeecccchhheeecCCCCeEecccchhee
Confidence            5789999988743         45899999999999999999999998   99999999999999999999999999987


Q ss_pred             eecC
Q 043694           81 FVKD   84 (142)
Q Consensus        81 ~~~~   84 (142)
                      ....
T Consensus       151 ~~~~  154 (263)
T d1sm2a_         151 VLDD  154 (263)
T ss_dssp             ----
T ss_pred             ccCC
Confidence            6543

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.6e-18  Score=117.31  Aligned_cols=129  Identities=20%  Similarity=0.273  Sum_probs=92.2

Q ss_pred             hhhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694            9 LYLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus         9 ~~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+.|+||||++++.       ..+++.++..++.|++.|+.|||+.+   ++|+|+++.||+++.++.+|++|||+++.+
T Consensus        90 ~~~~ivmEy~~gg~L~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~~---iiHrDiKp~NILl~~~~~vkl~DFG~a~~~  166 (293)
T d1yhwa1          90 DELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQI  166 (293)
T ss_dssp             TEEEEEEECCTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             CEEEEEEEecCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCC---CcccCCcHHHeEECCCCcEeeccchhheee
Confidence            35899999998754       45999999999999999999999999   999999999999999999999999999877


Q ss_pred             ecCcccccccccccchh--------------hhhhhhcCCcceee-c--------------------CCCCCCCCHHHHH
Q 043694           82 VKDDLEANTNRIVGTQE--------------SYNLWKDGKGRKLM-D--------------------PSLDDTHSSWKLL  126 (142)
Q Consensus        82 ~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~~~~-d--------------------~~~~~~~~~~~~~  126 (142)
                      ......  ....+||+.              ..+.|+.|-+...+ .                    .......+.+...
T Consensus       167 ~~~~~~--~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~  244 (293)
T d1yhwa1         167 TPEQSK--RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSA  244 (293)
T ss_dssp             CSTTCC--BCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSSGGGSCH
T ss_pred             cccccc--ccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCCCCcccCCH
Confidence            543321  222445443              45556544211111 0                    0111122223345


Q ss_pred             HHHHHHHhccCccCCC
Q 043694          127 TCLQIALLCVQENSND  142 (142)
Q Consensus       127 ~~~~i~~~C~~~~p~~  142 (142)
                      .+.++..+|++.||++
T Consensus       245 ~~~~li~~~L~~dP~~  260 (293)
T d1yhwa1         245 IFRDFLNRCLDMDVEK  260 (293)
T ss_dssp             HHHHHHHHHTCSSTTT
T ss_pred             HHHHHHHHHccCChhH
Confidence            6778889999999974

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.2e-18  Score=118.94  Aligned_cols=71  Identities=30%  Similarity=0.558  Sum_probs=61.9

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ..|+|+||++++.          ..++|.+++.++.+++.|+.|||+.+   ++|+|+++.||+++.++.+|++|||+++
T Consensus        85 ~~~lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~---ivH~DlKp~NIll~~~~~~kl~DfGla~  161 (285)
T d1fmka3          85 PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLAR  161 (285)
T ss_dssp             SCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCCTTC
T ss_pred             CeEEEEEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhh---eecccccceEEEECCCCcEEEcccchhh
Confidence            4789999998753          34999999999999999999999998   9999999999999999999999999998


Q ss_pred             eeec
Q 043694           80 IFVK   83 (142)
Q Consensus        80 ~~~~   83 (142)
                      .+..
T Consensus       162 ~~~~  165 (285)
T d1fmka3         162 LIED  165 (285)
T ss_dssp             ----
T ss_pred             hccC
Confidence            7643

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.5e-17  Score=114.93  Aligned_cols=131  Identities=24%  Similarity=0.320  Sum_probs=89.8

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.|+||||+++++        ..+++..+..++.|++.|+.|+|+.+   ++|||+++.||+++.++.++++|||+++.
T Consensus        81 ~~~~ivmEy~~gg~L~~~~~~~~~l~e~~~~~~~~qi~~al~ylH~~~---iiHrDiKp~NIll~~~~~vkl~DFG~a~~  157 (288)
T d1uu3a_          81 EKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKV  157 (288)
T ss_dssp             SEEEEEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             CEEEEEEEccCCCCHHHhhhccCCCCHHHHHHHHHHHHHHHHhhcccc---EEcCcCCccccccCCCceEEeccccccee
Confidence            35899999998753        56999999999999999999999999   99999999999999999999999999987


Q ss_pred             eecCcccccccccccchh--------------hhhhhhcCCcc----------------eeecCCCC--CCCCHHHHHHH
Q 043694           81 FVKDDLEANTNRIVGTQE--------------SYNLWKDGKGR----------------KLMDPSLD--DTHSSWKLLTC  128 (142)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~----------------~~~d~~~~--~~~~~~~~~~~  128 (142)
                      +............+||+.              ..+.|+.|-+.                ++...-..  ..++......+
T Consensus       158 ~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~  237 (288)
T d1uu3a_         158 LSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKA  237 (288)
T ss_dssp             CC----------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTCCCCCTTCCHHH
T ss_pred             cccCCcccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCHHHHHHHHHcCCCCCCccCCHHH
Confidence            754332222333456544              45566544211                10000000  11222334567


Q ss_pred             HHHHHhccCccCCC
Q 043694          129 LQIALLCVQENSND  142 (142)
Q Consensus       129 ~~i~~~C~~~~p~~  142 (142)
                      .++..+|++.||++
T Consensus       238 ~~li~~~L~~dP~~  251 (288)
T d1uu3a_         238 RDLVEKLLVLDATK  251 (288)
T ss_dssp             HHHHHTTSCSSGGG
T ss_pred             HHHHHHHccCCHhH
Confidence            78889999999963

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6.4e-18  Score=117.24  Aligned_cols=130  Identities=25%  Similarity=0.263  Sum_probs=92.4

Q ss_pred             hhheeeeeCCCcc------------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC
Q 043694           10 YLYLIFDVDPIRR------------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD   65 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~   65 (142)
                      ..|+|+||++++.                        ..+++.+++.++.|++.|+.|+|+.+   ++|+|+++.||+++
T Consensus        93 ~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~---ivHrDiKp~NiLl~  169 (299)
T d1fgka_          93 PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKK---CIHRDLAARNVLVT  169 (299)
T ss_dssp             SCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEC
T ss_pred             eEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCC---EEeeeecccceeec
Confidence            5788999987642                        34899999999999999999999999   99999999999999


Q ss_pred             CCCceEEecccceeeeecCcccccccccccchh--------------hhhhhhcCCc--------------------cee
Q 043694           66 EDLKSKISDFGLARIFVKDDLEANTNRIVGTQE--------------SYNLWKDGKG--------------------RKL  111 (142)
Q Consensus        66 ~~~~~~l~~fg~~~~~~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~--------------------~~~  111 (142)
                      .++..|++|||+++...............|++.              ..+.|+-|-.                    ...
T Consensus       170 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~~~~~~  249 (299)
T d1fgka_         170 EDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKL  249 (299)
T ss_dssp             TTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHH
T ss_pred             CCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCHHHHHHH
Confidence            999999999999887655433222222333322              2334433311                    112


Q ss_pred             ecCCCCCCCCHHHHHHHHHHHHhccCccCCC
Q 043694          112 MDPSLDDTHSSWKLLTCLQIALLCVQENSND  142 (142)
Q Consensus       112 ~d~~~~~~~~~~~~~~~~~i~~~C~~~~p~~  142 (142)
                      +..+.....+.+....+.+++.+||+.||++
T Consensus       250 i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~  280 (299)
T d1fgka_         250 LKEGHRMDKPSNCTNELYMMMRDCWHAVPSQ  280 (299)
T ss_dssp             HHTTCCCCCCSSCCHHHHHHHHHHTCSSGGG
T ss_pred             HHcCCCCCCCccchHHHHHHHHHHccCCHhH
Confidence            2222333344444567889999999999964

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=2.7e-18  Score=119.21  Aligned_cols=116  Identities=22%  Similarity=0.292  Sum_probs=78.9

Q ss_pred             ccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeeecCcccccccccccchh-----
Q 043694           24 ILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKDDLEANTNRIVGTQE-----   98 (142)
Q Consensus        24 ~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~~~~~~~~~~~~~g~~~-----   98 (142)
                      .+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.+|++|||+++...........+...|++.     
T Consensus       136 ~l~~~~~~~i~~qi~~gl~ylH~~~---ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE  212 (301)
T d1lufa_         136 PLSCAEQLCIARQVAAGMAYLSERK---FVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPE  212 (301)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHH
T ss_pred             CCCHHHHHHHHHHHHHHhhhcccCC---eEeeEEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHH
Confidence            3899999999999999999999998   99999999999999999999999999876544332222222333222     


Q ss_pred             ---------hhhhhhcCCcce-e-------------------ecCCCCCCCCHHHHHHHHHHHHhccCccCCC
Q 043694           99 ---------SYNLWKDGKGRK-L-------------------MDPSLDDTHSSWKLLTCLQIALLCVQENSND  142 (142)
Q Consensus        99 ---------~~~~~~~~~~~~-~-------------------~d~~~~~~~~~~~~~~~~~i~~~C~~~~p~~  142 (142)
                               ..++|+-|-+.. +                   +........+.+....+.+++.+||+.||++
T Consensus       213 ~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~~~e~~~~v~~~~~~~~p~~~~~~~~~li~~cl~~~P~~  285 (301)
T d1lufa_         213 SIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILACPENCPLELYNLMRLCWSKLPAD  285 (301)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             HHccCCCChhhhhccchhhHHHHHccCCCCCCCCCHHHHHHHHHcCCCCCCCccchHHHHHHHHHHcCCChhH
Confidence                     334443331110 1                   1111112234445568899999999999964

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.9e-17  Score=114.49  Aligned_cols=128  Identities=20%  Similarity=0.250  Sum_probs=92.0

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ++|+|+||++++.        ..+++..+..++.|++.|+.|+|+.+   ++|||+++.||+++.++.+|++|||+++..
T Consensus        79 ~~~iv~ey~~gg~L~~~~~~~~~~~e~~~~~~~~qil~al~ylH~~~---iiHRDlKP~NILl~~~g~vkl~DFG~a~~~  155 (337)
T d1o6la_          79 RLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRD---VVYRDIKLENLMLDKDGHIKITDFGLCKEG  155 (337)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCS
T ss_pred             ccccceeccCCCchhhhhhcccCCcHHHHHHHHHHHhhhhhhhhhcC---ccccccCHHHeEecCCCCEEEeeccccccc
Confidence            5899999998754        55999999999999999999999999   999999999999999999999999999875


Q ss_pred             ecCcccccccccccchh--------------hhhhhhcCCcce-eecCC--C---------------CCCCCHHHHHHHH
Q 043694           82 VKDDLEANTNRIVGTQE--------------SYNLWKDGKGRK-LMDPS--L---------------DDTHSSWKLLTCL  129 (142)
Q Consensus        82 ~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~~-~~d~~--~---------------~~~~~~~~~~~~~  129 (142)
                      ......  ....+||+.              ..+.|+.|-+.. ++...  .               ...++......+.
T Consensus       156 ~~~~~~--~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~  233 (337)
T d1o6la_         156 ISDGAT--MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAK  233 (337)
T ss_dssp             CCTTCC--BCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHH
T ss_pred             ccCCcc--cccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCHHHHHHHHhcCCCCCCccCCHHHH
Confidence            443221  223556554              556665553221 11100  0               0112222334567


Q ss_pred             HHHHhccCccCCC
Q 043694          130 QIALLCVQENSND  142 (142)
Q Consensus       130 ~i~~~C~~~~p~~  142 (142)
                      .+..+|++.||++
T Consensus       234 dli~~~L~~dP~~  246 (337)
T d1o6la_         234 SLLAGLLKKDPKQ  246 (337)
T ss_dssp             HHHHHHTCSSTTT
T ss_pred             HHHHhhccCCchh
Confidence            7888999999974

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=6.7e-18  Score=117.73  Aligned_cols=130  Identities=22%  Similarity=0.269  Sum_probs=92.8

Q ss_pred             hhheeeeeCCCcc--------------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEE
Q 043694           10 YLYLIFDVDPIRR--------------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNIL   63 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   63 (142)
                      ..|+++||+++++                          ..+++..+..++.|++.|+.|||+++   ++|+|+++.||+
T Consensus       101 ~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~---ivHrDLKp~NIl  177 (311)
T d1t46a_         101 PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKN---CIHRDLAARNIL  177 (311)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEE
T ss_pred             EEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccccccccc
Confidence            4789999988742                          25899999999999999999999999   999999999999


Q ss_pred             eCCCCceEEecccceeeeecCcccccccccccchh--------------hhhhhhcCC---------------------c
Q 043694           64 LDEDLKSKISDFGLARIFVKDDLEANTNRIVGTQE--------------SYNLWKDGK---------------------G  108 (142)
Q Consensus        64 ~~~~~~~~l~~fg~~~~~~~~~~~~~~~~~~g~~~--------------~~~~~~~~~---------------------~  108 (142)
                      ++.++..+++|||.++...............|++.              ..+.|+-|.                     +
T Consensus       178 ~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~~~~~  257 (311)
T d1t46a_         178 LTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKF  257 (311)
T ss_dssp             EETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHH
T ss_pred             ccccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCCHHHHH
Confidence            99999999999999987654333222333444443              233333221                     1


Q ss_pred             ceeecCCCCCCCCHHHHHHHHHHHHhccCccCCC
Q 043694          109 RKLMDPSLDDTHSSWKLLTCLQIALLCVQENSND  142 (142)
Q Consensus       109 ~~~~d~~~~~~~~~~~~~~~~~i~~~C~~~~p~~  142 (142)
                      ...++.......+......+.+++.+||+.||++
T Consensus       258 ~~~i~~~~~~~~~~~~~~~l~~Li~~cl~~dP~~  291 (311)
T d1t46a_         258 YKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLK  291 (311)
T ss_dssp             HHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGG
T ss_pred             HHHHhcCCCCCCcccccHHHHHHHHHHcCCChhH
Confidence            1222233333334444568889999999999964

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3e-17  Score=111.97  Aligned_cols=71  Identities=30%  Similarity=0.443  Sum_probs=64.6

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||++++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++..|++|||++...
T Consensus        80 ~~~ivmEy~~~g~L~~~l~~~~~l~e~~~~~i~~qi~~al~~lH~~~---ivHrDiKp~Nill~~~~~~kl~DFG~a~~~  156 (263)
T d2j4za1          80 RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIKPENLLLGSAGELKIADFGWSVHA  156 (263)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCCSCSCC
T ss_pred             EEEEEEeecCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeeeeccccceecCCCCEeecccceeeec
Confidence            5889999998754        56999999999999999999999998   999999999999999999999999998765


Q ss_pred             ec
Q 043694           82 VK   83 (142)
Q Consensus        82 ~~   83 (142)
                      ..
T Consensus       157 ~~  158 (263)
T d2j4za1         157 PS  158 (263)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.68  E-value=4.5e-17  Score=111.87  Aligned_cols=72  Identities=29%  Similarity=0.561  Sum_probs=65.6

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ++|+||||+++++        .++++.++..++.|++.|+.|||+.+   ++|+|+++.|++++.++..|++|||++..+
T Consensus        84 ~~~ivmE~~~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~~lH~~~---ivHrDlkp~Nill~~~~~~kl~DFG~a~~~  160 (277)
T d1phka_          84 FFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLN---IVHRDLKPENILLDDDMNIKLTDFGFSCQL  160 (277)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             ceEEEEEcCCCchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcC---CcccccccceEEEcCCCCeEEccchheeEc
Confidence            5799999998753        56999999999999999999999998   999999999999999999999999999876


Q ss_pred             ecC
Q 043694           82 VKD   84 (142)
Q Consensus        82 ~~~   84 (142)
                      ...
T Consensus       161 ~~~  163 (277)
T d1phka_         161 DPG  163 (277)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            543

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.68  E-value=1.4e-16  Score=113.23  Aligned_cols=72  Identities=33%  Similarity=0.341  Sum_probs=65.0

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+|+||||++++.        ..+++..+..++.|++.|+.|||+.+   ++|||+++.||+++.++.+|++|||++..+
T Consensus        81 ~~~ivmE~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~ylH~~~---iiHrDlKP~NILl~~~g~iKl~DFGla~~~  157 (364)
T d1omwa3          81 KLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDF  157 (364)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECSSSCEEECCCTTCEEC
T ss_pred             EEEEEEEecCCCcHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHCC---ccceeeccceeEEcCCCcEEEeeeceeeec
Confidence            4799999998754        45899999999999999999999999   999999999999999999999999999876


Q ss_pred             ecC
Q 043694           82 VKD   84 (142)
Q Consensus        82 ~~~   84 (142)
                      ...
T Consensus       158 ~~~  160 (364)
T d1omwa3         158 SKK  160 (364)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            543

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=5.4e-18  Score=116.07  Aligned_cols=75  Identities=31%  Similarity=0.442  Sum_probs=57.6

Q ss_pred             hhhheeeeeCCCcc------------cccCHHHHHHHHHHHHHHhhhhhccC--CCceEecccCCCcEEeCCCCceEEec
Q 043694            9 LYLYLIFDVDPIRR------------FILDWKTCIHIIQGITQGLLYLQEYS--KLIVIHQDLKASNILLDEDLKSKISD   74 (142)
Q Consensus         9 ~~~~lv~e~~~~~~------------~~l~~~~~~~~~~~i~~~l~~lh~~~--~~~i~h~~l~~~nil~~~~~~~~l~~   74 (142)
                      ..+|+||||+++++            ..+++..+..++.|++.|+.|+|+++  ...++|||+++.||+++.++.+|++|
T Consensus        78 ~~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~D  157 (269)
T d2java1          78 TTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGD  157 (269)
T ss_dssp             -CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECC
T ss_pred             CEEEEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEee
Confidence            35789999998743            35999999999999999999999864  23499999999999999999999999


Q ss_pred             ccceeeeec
Q 043694           75 FGLARIFVK   83 (142)
Q Consensus        75 fg~~~~~~~   83 (142)
                      ||+++.+..
T Consensus       158 FG~a~~~~~  166 (269)
T d2java1         158 FGLARILNH  166 (269)
T ss_dssp             HHHHHHC--
T ss_pred             ccceeeccc
Confidence            999887654

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=8e-18  Score=117.63  Aligned_cols=129  Identities=19%  Similarity=0.326  Sum_probs=87.1

Q ss_pred             hheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           11 LYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        11 ~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      .+++++++.++         ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.+|++|||+++.+
T Consensus        85 ~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~---iiHrDlKp~NIll~~~~~~kl~DFGla~~~  161 (317)
T d1xkka_          85 VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL  161 (317)
T ss_dssp             EEEEEECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEETTEEEECCCSHHHHT
T ss_pred             eeEEEEeccCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHcC---cccCcchhhcceeCCCCCeEeeccccceec
Confidence            46677776653         356999999999999999999999998   999999999999999999999999998876


Q ss_pred             ecCcccccccccccchh--------------hhhhhhcCC--------------------cceeecCCCCCCCCHHHHHH
Q 043694           82 VKDDLEANTNRIVGTQE--------------SYNLWKDGK--------------------GRKLMDPSLDDTHSSWKLLT  127 (142)
Q Consensus        82 ~~~~~~~~~~~~~g~~~--------------~~~~~~~~~--------------------~~~~~d~~~~~~~~~~~~~~  127 (142)
                      .............|++.              ..+.|+-|-                    +...+........+......
T Consensus       162 ~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~~~~~i~~~~~~~~p~~~~~~  241 (317)
T d1xkka_         162 GAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTID  241 (317)
T ss_dssp             TTTCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGGHHHHHHHTCCCCCCTTBCHH
T ss_pred             ccccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHH
Confidence            54332221222223322              233333221                    11222222223344455567


Q ss_pred             HHHHHHhccCccCCC
Q 043694          128 CLQIALLCVQENSND  142 (142)
Q Consensus       128 ~~~i~~~C~~~~p~~  142 (142)
                      +.+++.+||+.||++
T Consensus       242 ~~~li~~cl~~dP~~  256 (317)
T d1xkka_         242 VYMIMVKCWMIDADS  256 (317)
T ss_dssp             HHHHHHHHTCSSGGG
T ss_pred             HHHHHHHhCCCChhh
Confidence            889999999999964

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.4e-17  Score=113.04  Aligned_cols=71  Identities=27%  Similarity=0.341  Sum_probs=64.1

Q ss_pred             hhhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            9 LYLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ...|+||||++++.         ..+++.++..++.|++.|+.|||+.+   ++|+|+++.||+++.++..|++|||++.
T Consensus        82 ~~~~lvmEy~~~g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH~~~---ivHrDiKp~NIll~~~~~~Kl~DFG~a~  158 (288)
T d2jfla1          82 NNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNK---IIHRDLKAGNILFTLDGDIKLADFGVSA  158 (288)
T ss_dssp             TEEEEEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CeEEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---EEEeecChhheeECCCCCEEEEechhhh
Confidence            35789999988743         45999999999999999999999999   9999999999999999999999999987


Q ss_pred             eee
Q 043694           80 IFV   82 (142)
Q Consensus        80 ~~~   82 (142)
                      ...
T Consensus       159 ~~~  161 (288)
T d2jfla1         159 KNT  161 (288)
T ss_dssp             ECH
T ss_pred             ccC
Confidence            654

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.8e-17  Score=115.46  Aligned_cols=72  Identities=26%  Similarity=0.426  Sum_probs=63.7

Q ss_pred             hhheeeeeCCCcc------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceE
Q 043694           10 YLYLIFDVDPIRR------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSK   71 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~   71 (142)
                      ..++|+||+.+++                  ..+++..+..++.+++.|+.|||+.+   ++|+|+++.||+++.+..+|
T Consensus        97 ~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~---ivHrDlk~~NiLld~~~~~K  173 (308)
T d1p4oa_          97 PTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANK---FVHRDLAARNCMVAEDFTVK  173 (308)
T ss_dssp             SCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCSGGGEEECTTCCEE
T ss_pred             ceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCC---eeeceEcCCceeecCCceEE
Confidence            4789999988753                  23688999999999999999999998   99999999999999999999


Q ss_pred             EecccceeeeecC
Q 043694           72 ISDFGLARIFVKD   84 (142)
Q Consensus        72 l~~fg~~~~~~~~   84 (142)
                      ++|||+++.+...
T Consensus       174 l~DFGla~~~~~~  186 (308)
T d1p4oa_         174 IGDFGMTRDIYET  186 (308)
T ss_dssp             ECCTTCCCGGGGG
T ss_pred             EeecccceeccCC
Confidence            9999999876543

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=1.5e-17  Score=115.89  Aligned_cols=71  Identities=34%  Similarity=0.433  Sum_probs=64.3

Q ss_pred             hhhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+.|+|+||+.++        ...+++..+..++.|++.|+.|||+.+   ++|||+++.||+++.++..|++|||++..
T Consensus        88 ~~~~iv~E~~~~g~l~~~~~~~~~l~e~~~~~i~~qi~~aL~yLH~~~---iiHrDiKp~NILl~~~~~~Kl~DFG~a~~  164 (309)
T d1u5ra_          88 HTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSASI  164 (309)
T ss_dssp             TEEEEEEECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEEETTTEEEECCCTTCBS
T ss_pred             CEEEEEEEecCCCchHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCC---EeccCCCcceEEECCCCCEEEeecccccc
Confidence            3589999998764        356999999999999999999999999   99999999999999999999999999876


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       165 ~~  166 (309)
T d1u5ra_         165 MA  166 (309)
T ss_dssp             SS
T ss_pred             cC
Confidence            54

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.8e-17  Score=113.59  Aligned_cols=71  Identities=25%  Similarity=0.502  Sum_probs=57.3

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .+|+|+||++++         ...+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.+|++|||+++.
T Consensus        81 ~~~iv~E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~---iiHrDlKp~NIll~~~~~~Kl~DfG~a~~  157 (273)
T d1mp8a_          81 PVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRY  157 (273)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECC------
T ss_pred             eEEEEEEeccCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhhcccC---eeccccchhheeecCCCcEEEccchhhee
Confidence            578999998864         345999999999999999999999999   99999999999999999999999999987


Q ss_pred             eec
Q 043694           81 FVK   83 (142)
Q Consensus        81 ~~~   83 (142)
                      ...
T Consensus       158 ~~~  160 (273)
T d1mp8a_         158 MED  160 (273)
T ss_dssp             ---
T ss_pred             ccC
Confidence            653

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.4e-17  Score=111.46  Aligned_cols=73  Identities=25%  Similarity=0.448  Sum_probs=64.8

Q ss_pred             hhhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            9 LYLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ..+|+|+||++++         ...+++..+..++.|+++|+.|||+.+   ++|+|+++.|++++.++..|++|||+++
T Consensus        72 ~~~~iv~Ey~~~g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH~~~---iiH~dlk~~Nill~~~~~~kl~DfG~a~  148 (258)
T d1k2pa_          72 RPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQ---FLHRDLAARNCLVNDQGVVKVSDFGLSR  148 (258)
T ss_dssp             SSEEEEEECCTTEEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTT---BCCSCCSGGGEEECTTCCEEECCCSSCC
T ss_pred             CceEEEEEccCCCcHHHhhhccccCCcHHHHHHHHHHHHHHHHHHhhcC---cccccccceeEEEcCCCcEEECcchhhe
Confidence            3579999998764         355999999999999999999999998   9999999999999999999999999998


Q ss_pred             eeecC
Q 043694           80 IFVKD   84 (142)
Q Consensus        80 ~~~~~   84 (142)
                      .+...
T Consensus       149 ~~~~~  153 (258)
T d1k2pa_         149 YVLDD  153 (258)
T ss_dssp             BCSSS
T ss_pred             eccCC
Confidence            66543

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=8.3e-17  Score=110.30  Aligned_cols=72  Identities=28%  Similarity=0.404  Sum_probs=64.3

Q ss_pred             hhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||++++.         ..+++..++.++.|++.|+.|||+.+   ++|+|+++.||+++.+..+|++|||+++.
T Consensus        84 ~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~---iiHrDikp~NIll~~~~~vkl~DfGl~~~  160 (273)
T d1u46a_          84 PMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKR---FIHRDLAARNLLLATRDLVKIGDFGLMRA  160 (273)
T ss_dssp             SCEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEEEETTEEEECCCTTCEE
T ss_pred             chheeeeeecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHhhhCC---EeeeeecHHHhccccccceeeccchhhhh
Confidence            4689999988643         45999999999999999999999998   99999999999999999999999999987


Q ss_pred             eecC
Q 043694           81 FVKD   84 (142)
Q Consensus        81 ~~~~   84 (142)
                      +...
T Consensus       161 ~~~~  164 (273)
T d1u46a_         161 LPQN  164 (273)
T ss_dssp             CCC-
T ss_pred             cccC
Confidence            6543

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.7e-17  Score=113.85  Aligned_cols=70  Identities=37%  Similarity=0.607  Sum_probs=63.2

Q ss_pred             hhheeeeeCCCcc------------------------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC
Q 043694           10 YLYLIFDVDPIRR------------------------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD   65 (142)
Q Consensus        10 ~~~lv~e~~~~~~------------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~   65 (142)
                      .+|+|+||+++++                        ..+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++
T Consensus        85 ~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~---iiHrDlkp~NIL~~  161 (309)
T d1fvra_          85 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ---FIHRDLAARNILVG  161 (309)
T ss_dssp             EEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEC
T ss_pred             eeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCC---ccccccccceEEEc
Confidence            4789999988643                        45899999999999999999999998   99999999999999


Q ss_pred             CCCceEEecccceeeee
Q 043694           66 EDLKSKISDFGLARIFV   82 (142)
Q Consensus        66 ~~~~~~l~~fg~~~~~~   82 (142)
                      .++..|++|||+++...
T Consensus       162 ~~~~~kl~DfG~a~~~~  178 (309)
T d1fvra_         162 ENYVAKIADFGLSRGQE  178 (309)
T ss_dssp             GGGCEEECCTTCEESSC
T ss_pred             CCCceEEcccccccccc
Confidence            99999999999987544

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3e-17  Score=111.94  Aligned_cols=130  Identities=18%  Similarity=0.242  Sum_probs=84.6

Q ss_pred             hhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694           10 YLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      .+|+|+||+++++          ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++..+++|||+++
T Consensus        75 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~---ivH~dlkp~Nil~~~~~~~kl~dfg~s~  151 (262)
T d1byga_          75 GLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTK  151 (262)
T ss_dssp             CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTSCEEECCCCC--
T ss_pred             cEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCc---eeccccchHhheecCCCCEeecccccce
Confidence            4689999998753          34899999999999999999999998   9999999999999999999999999988


Q ss_pred             eeecCcccccccccccchh---------hhhhhhcC----------C----------cceeecCCCCCCCCHHHHHHHHH
Q 043694           80 IFVKDDLEANTNRIVGTQE---------SYNLWKDG----------K----------GRKLMDPSLDDTHSSWKLLTCLQ  130 (142)
Q Consensus        80 ~~~~~~~~~~~~~~~g~~~---------~~~~~~~~----------~----------~~~~~d~~~~~~~~~~~~~~~~~  130 (142)
                      ...............-+|+         ..+.|+-|          +          +...+........+......+.+
T Consensus       152 ~~~~~~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  231 (262)
T d1byga_         152 EASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYE  231 (262)
T ss_dssp             ----------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCCCCCCTTCCHHHHH
T ss_pred             ecCCCCccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHH
Confidence            7543322111111111222         22333222          1          11111122233444445567889


Q ss_pred             HHHhccCccCCC
Q 043694          131 IALLCVQENSND  142 (142)
Q Consensus       131 i~~~C~~~~p~~  142 (142)
                      +..+||+.||++
T Consensus       232 li~~cl~~dP~~  243 (262)
T d1byga_         232 VMKNCWHLDAAM  243 (262)
T ss_dssp             HHHHHTCSSGGG
T ss_pred             HHHHHcccCHhH
Confidence            999999999964

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.8e-17  Score=112.51  Aligned_cols=72  Identities=26%  Similarity=0.371  Sum_probs=62.1

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC-CCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD-EDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~-~~~~~~l~~fg~~~~   80 (142)
                      .+|+||||+++++        ..+++..+..++.|++.|+.|||+++ ++++|+|+++.||+++ .++.+|++|||+++.
T Consensus        86 ~~~ivmE~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~gl~yLH~~~-~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~  164 (270)
T d1t4ha_          86 CIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATL  164 (270)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCSCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred             EEEEEEeCCCCCcHHHHHhccccccHHHHHHHHHHHHHHHHHHHHCC-CCEEeCCcChhhceeeCCCCCEEEeecCccee
Confidence            4689999998754        46999999999999999999999875 3489999999999996 478999999999875


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       165 ~~  166 (270)
T d1t4ha_         165 KR  166 (270)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.3e-16  Score=109.54  Aligned_cols=75  Identities=27%  Similarity=0.339  Sum_probs=64.9

Q ss_pred             hhheeeeeCCCcc-------cccCHHHHHHHHHHHHHHhhhhhccC-----CCceEecccCCCcEEeCCCCceEEecccc
Q 043694           10 YLYLIFDVDPIRR-------FILDWKTCIHIIQGITQGLLYLQEYS-----KLIVIHQDLKASNILLDEDLKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~-----~~~i~h~~l~~~nil~~~~~~~~l~~fg~   77 (142)
                      ..|+|+||+++++       ..++|.++..++.+++.|+.|+|+..     ..+++|+|+++.||+++.++.+|++|||+
T Consensus        75 ~~~lv~Ey~~~g~L~~~l~~~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl  154 (303)
T d1vjya_          75 QLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL  154 (303)
T ss_dssp             EEEEEEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTT
T ss_pred             EEEEEEecccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCc
Confidence            4689999998754       46999999999999999999999741     23499999999999999999999999999


Q ss_pred             eeeeecC
Q 043694           78 ARIFVKD   84 (142)
Q Consensus        78 ~~~~~~~   84 (142)
                      ++.....
T Consensus       155 ~~~~~~~  161 (303)
T d1vjya_         155 AVRHDSA  161 (303)
T ss_dssp             CEEEETT
T ss_pred             cccccCC
Confidence            9887643

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=7.9e-17  Score=112.31  Aligned_cols=73  Identities=26%  Similarity=0.342  Sum_probs=64.3

Q ss_pred             hhhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEeccccee
Q 043694            9 LYLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLAR   79 (142)
Q Consensus         9 ~~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~   79 (142)
                      ...++|+||++++.         ..+++..++.++.|++.|+.|+|+.+   ++|+|+++.||+++.++.+|++|||+++
T Consensus       102 ~~~~lv~E~~~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~~lH~~~---iiHrDLK~~NILl~~~~~~kL~DFG~~~  178 (311)
T d1r0pa_         102 GSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKK---FVHRDLAARNCMLDEKFTVKVADFGLAR  178 (311)
T ss_dssp             TEEEEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTCCEEECSSGGGC
T ss_pred             CceEEEEEEeecCchhhhhccccccchHHHHHHHHHHHHHhhhhhcccC---cccCCccHHhEeECCCCCEEEecccchh
Confidence            35789999988744         34778899999999999999999998   9999999999999999999999999998


Q ss_pred             eeecC
Q 043694           80 IFVKD   84 (142)
Q Consensus        80 ~~~~~   84 (142)
                      .....
T Consensus       179 ~~~~~  183 (311)
T d1r0pa_         179 DMYDK  183 (311)
T ss_dssp             CTTTT
T ss_pred             hcccc
Confidence            76543

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.65  E-value=1.2e-16  Score=113.15  Aligned_cols=73  Identities=27%  Similarity=0.410  Sum_probs=64.2

Q ss_pred             hhhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC--CCCceEEecccc
Q 043694            9 LYLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD--EDLKSKISDFGL   77 (142)
Q Consensus         9 ~~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~--~~~~~~l~~fg~   77 (142)
                      ..+|+||||+++++         ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++  .++.++++|||+
T Consensus        99 ~~~~ivmE~~~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~---iiHRDiKp~NILl~~~~~~~vkL~DFGl  175 (352)
T d1koba_          99 YEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHS---IVHLDIKPENIMCETKKASSVKIIDFGL  175 (352)
T ss_dssp             SEEEEEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSTTCCCEEECCCTT
T ss_pred             CEEEEEEEcCCCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecccccccccccccCCCeEEEeeccc
Confidence            35799999988643         35999999999999999999999998   99999999999997  467899999999


Q ss_pred             eeeeecC
Q 043694           78 ARIFVKD   84 (142)
Q Consensus        78 ~~~~~~~   84 (142)
                      +..+...
T Consensus       176 a~~~~~~  182 (352)
T d1koba_         176 ATKLNPD  182 (352)
T ss_dssp             CEECCTT
T ss_pred             ceecCCC
Confidence            9877543

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=4.7e-16  Score=108.18  Aligned_cols=72  Identities=31%  Similarity=0.432  Sum_probs=57.4

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC---CCCceEEecccc
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD---EDLKSKISDFGL   77 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~---~~~~~~l~~fg~   77 (142)
                      .+.|+||||+++++        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||++.   .++.++++|||+
T Consensus        80 ~~~~lvmE~~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~---iiHrDiKp~Nil~~~~~~~~~vkl~DFG~  156 (307)
T d1a06a_          80 GHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLG---IVHRDLKPENLLYYSLDEDSKIMISDFGL  156 (307)
T ss_dssp             SEEEEEECCCCSCBHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESSSSTTCCEEECCC--
T ss_pred             CEEEEEEeccCCCcHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhhce---eeeEEecccceeecccCCCceEEEeccce
Confidence            35899999998643        46999999999999999999999998   99999999999995   467899999999


Q ss_pred             eeeeec
Q 043694           78 ARIFVK   83 (142)
Q Consensus        78 ~~~~~~   83 (142)
                      +.....
T Consensus       157 a~~~~~  162 (307)
T d1a06a_         157 SKMEDP  162 (307)
T ss_dssp             ------
T ss_pred             eEEccC
Confidence            986543

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.4e-17  Score=114.07  Aligned_cols=71  Identities=23%  Similarity=0.342  Sum_probs=63.4

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhcc-CCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEY-SKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~-~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||++++.        ..+++..+..++.|++.|+.|||++ +   ++|||++|.||+++.++.+|++|||++..
T Consensus        78 ~~~iVmEy~~gg~L~~~l~~~~~l~~~~~~~~~~qil~aL~yLH~~~~---IiHRDiKP~NILl~~~~~vkl~DFGla~~  154 (322)
T d1s9ja_          78 EISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHK---IMHRDVKPSNILVNSRGEIKLCDFGVSGQ  154 (322)
T ss_dssp             EEEEEEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHC---CCCSCCSGGGEEECTTCCEEECCCCCCHH
T ss_pred             EEEEEEEcCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhCC---EEccccCHHHeeECCCCCEEEeeCCCccc
Confidence            4799999998743        4699999999999999999999974 7   99999999999999999999999999886


Q ss_pred             eec
Q 043694           81 FVK   83 (142)
Q Consensus        81 ~~~   83 (142)
                      +..
T Consensus       155 ~~~  157 (322)
T d1s9ja_         155 LID  157 (322)
T ss_dssp             HHH
T ss_pred             cCC
Confidence            543

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=5.2e-16  Score=109.11  Aligned_cols=73  Identities=21%  Similarity=0.376  Sum_probs=63.6

Q ss_pred             hhhheeeeeCCCcc----------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC---CCceEEecc
Q 043694            9 LYLYLIFDVDPIRR----------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE---DLKSKISDF   75 (142)
Q Consensus         9 ~~~~lv~e~~~~~~----------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~---~~~~~l~~f   75 (142)
                      .++|+|+||+++++          ..|++.++..++.|++.|+.|||+.+   ++|||+++.||+++.   .+.+|++||
T Consensus        82 ~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~---iiHRDiKp~NIll~~~~~~~~~Kl~DF  158 (335)
T d2ozaa1          82 KCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDF  158 (335)
T ss_dssp             EEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESCSSTTCCEEECCC
T ss_pred             CEEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHcC---Ccccccccccccccccccccccccccc
Confidence            45799999998632          46999999999999999999999999   999999999999975   457999999


Q ss_pred             cceeeeecC
Q 043694           76 GLARIFVKD   84 (142)
Q Consensus        76 g~~~~~~~~   84 (142)
                      |+++.....
T Consensus       159 G~a~~~~~~  167 (335)
T d2ozaa1         159 GFAKETTSH  167 (335)
T ss_dssp             TTCEECCCC
T ss_pred             ceeeeccCC
Confidence            999876543

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=5.6e-16  Score=108.34  Aligned_cols=71  Identities=28%  Similarity=0.422  Sum_probs=64.6

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ++|+|+||++++.        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++..+++|||++...
T Consensus        77 ~~yivmEy~~~g~L~~~i~~~~~~~e~~~~~~~~qi~~al~ylH~~~---iiHrDikp~NiL~~~~~~~kl~DFG~a~~~  153 (320)
T d1xjda_          77 NLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKG---IVYRDLKLDNILLDKDGHIKIADFGMCKEN  153 (320)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred             ceeEEEeecCCCcHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCcccceeecCCCceeccccchhhhc
Confidence            5899999998753        55999999999999999999999999   999999999999999999999999999865


Q ss_pred             ec
Q 043694           82 VK   83 (142)
Q Consensus        82 ~~   83 (142)
                      ..
T Consensus       154 ~~  155 (320)
T d1xjda_         154 ML  155 (320)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=1.6e-15  Score=105.86  Aligned_cols=72  Identities=28%  Similarity=0.366  Sum_probs=64.8

Q ss_pred             hhhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      .++|+|+||++++.        ..+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++.++.+|++|||+++.
T Consensus        77 ~~~~ivmE~~~gg~l~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---iiHrDiKp~NILl~~~g~vkL~DFG~a~~  153 (316)
T d1fota_          77 QQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKD---IIYRDLKPENILLDKNGHIKITDFGFAKY  153 (316)
T ss_dssp             SEEEEEECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECTTSCEEECCCSSCEE
T ss_pred             CeeeeEeeecCCccccccccccccccccHHHHHHHHHHHhhhhhccCc---EEccccCchheeEcCCCCEEEecCccceE
Confidence            35799999998754        55899999999999999999999999   99999999999999999999999999987


Q ss_pred             eec
Q 043694           81 FVK   83 (142)
Q Consensus        81 ~~~   83 (142)
                      ...
T Consensus       154 ~~~  156 (316)
T d1fota_         154 VPD  156 (316)
T ss_dssp             CSS
T ss_pred             ecc
Confidence            653

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.61  E-value=3.3e-16  Score=110.74  Aligned_cols=73  Identities=21%  Similarity=0.334  Sum_probs=63.7

Q ss_pred             hhhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC--CCceEEecccc
Q 043694            9 LYLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE--DLKSKISDFGL   77 (142)
Q Consensus         9 ~~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~--~~~~~l~~fg~   77 (142)
                      ...|+||||+++++         ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||++..  ++.+|++|||+
T Consensus        96 ~~~~ivmE~~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~---iiHrDiKp~NIll~~~~~~~vkL~DFG~  172 (350)
T d1koaa2          96 NEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENN---YVHLDLKPENIMFTTKRSNELKLIDFGL  172 (350)
T ss_dssp             TEEEEEECCCCSCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSTTSCCEEECCCTT
T ss_pred             CEEEEEEEcCCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcC---CeeeeechhHeeeccCCCCeEEEeecch
Confidence            35899999988643         45999999999999999999999999   999999999999963  57899999999


Q ss_pred             eeeeecC
Q 043694           78 ARIFVKD   84 (142)
Q Consensus        78 ~~~~~~~   84 (142)
                      +..+...
T Consensus       173 a~~~~~~  179 (350)
T d1koaa2         173 TAHLDPK  179 (350)
T ss_dssp             CEECCTT
T ss_pred             heecccc
Confidence            9876543

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.2e-16  Score=108.43  Aligned_cols=71  Identities=35%  Similarity=0.508  Sum_probs=63.7

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+||||+.++        ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++..|++|||.+...
T Consensus        74 ~~~ivmE~~~~~~~~~~~~~~~~l~~~~~~~~~~qil~aL~~lH~~~---iiHrDiKp~NIli~~~~~~KL~DFG~a~~~  150 (299)
T d1ua2a_          74 NISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHW---ILHRDLKPNNLLLDENGVLKLADFGLAKSF  150 (299)
T ss_dssp             CCEEEEECCSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECCCGGGSTT
T ss_pred             ceeehhhhhcchHHhhhhhcccCCCHHHHHHHHHHHHHHHHHhhccc---eecccCCcceEEecCCCccccccCcccccc
Confidence            579999998763        456999999999999999999999999   999999999999999999999999998765


Q ss_pred             ec
Q 043694           82 VK   83 (142)
Q Consensus        82 ~~   83 (142)
                      ..
T Consensus       151 ~~  152 (299)
T d1ua2a_         151 GS  152 (299)
T ss_dssp             TS
T ss_pred             CC
Confidence            43

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=7.8e-16  Score=108.79  Aligned_cols=71  Identities=23%  Similarity=0.317  Sum_probs=64.2

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+|+||+.++.        ..+++..+..++.|++.|+.|||+.+   ++|||+++.||+++.++.+|++|||+++.+
T Consensus       115 ~~~~v~e~~~~g~l~~~l~~~~~l~e~~~~~i~~qi~~aL~yLH~~~---iiHRDIKP~NILl~~~g~ikL~DFG~a~~~  191 (350)
T d1rdqe_         115 NLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD---LIYRDLKPENLLIDQQGYIQVTDFGFAKRV  191 (350)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             ccccccccccccchhhhHhhcCCCCHHHHHHHHHHHHHHHHHHHhCC---EecCcCCHHHcccCCCCCEEeeeceeeeec
Confidence            4688999987754        46999999999999999999999999   999999999999999999999999999876


Q ss_pred             ec
Q 043694           82 VK   83 (142)
Q Consensus        82 ~~   83 (142)
                      ..
T Consensus       192 ~~  193 (350)
T d1rdqe_         192 KG  193 (350)
T ss_dssp             SS
T ss_pred             cc
Confidence            53

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.1e-15  Score=106.47  Aligned_cols=72  Identities=31%  Similarity=0.519  Sum_probs=63.0

Q ss_pred             hhheeeeeCCCc-----------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC-CceEEecccc
Q 043694           10 YLYLIFDVDPIR-----------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED-LKSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~-----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~-~~~~l~~fg~   77 (142)
                      |+|+|+||++++           ...+++.++..++.|++.|+.|||+.+   ++|||+++.||+++.+ ..+|++|||+
T Consensus        93 ~~~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~---IiHrDiKp~NILl~~~~~~~kl~DFG~  169 (350)
T d1q5ka_          93 YLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGS  169 (350)
T ss_dssp             EEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECTTTCCEEECCCTT
T ss_pred             EEEEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcC---CcccCCCcceEEEecCCCceeEecccc
Confidence            578999998753           345999999999999999999999998   9999999999999876 4899999999


Q ss_pred             eeeeecC
Q 043694           78 ARIFVKD   84 (142)
Q Consensus        78 ~~~~~~~   84 (142)
                      +......
T Consensus       170 a~~~~~~  176 (350)
T d1q5ka_         170 AKQLVRG  176 (350)
T ss_dssp             CEECCTT
T ss_pred             hhhccCC
Confidence            8876543

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.7e-15  Score=102.58  Aligned_cols=126  Identities=19%  Similarity=0.242  Sum_probs=87.3

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC-CCceEEeccccee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE-DLKSKISDFGLAR   79 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~-~~~~~l~~fg~~~   79 (142)
                      ..|+|+||+.++         ...+++..+..++.|++.|+.|+|+.+   ++|+|+++.||+++. ++.++++|||++.
T Consensus        83 ~~~lv~e~~~~~~~l~~~~~~~~~l~e~~~~~~~~qi~~al~~lH~~~---iiHrDiKp~NIll~~~~~~vkl~DFG~a~  159 (273)
T d1xwsa_          83 SFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCG---VLHRDIKDENILIDLNRGELKLIDFGSGA  159 (273)
T ss_dssp             EEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             eEEEEEEeccCcchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---CccccCcccceEEecCCCeEEECccccce
Confidence            478999987642         345999999999999999999999999   999999999999985 4789999999998


Q ss_pred             eeecCcccccccccccchh---------------hhhhhhcCCcc-eeecCCCC-----------CCCCHHHHHHHHHHH
Q 043694           80 IFVKDDLEANTNRIVGTQE---------------SYNLWKDGKGR-KLMDPSLD-----------DTHSSWKLLTCLQIA  132 (142)
Q Consensus        80 ~~~~~~~~~~~~~~~g~~~---------------~~~~~~~~~~~-~~~d~~~~-----------~~~~~~~~~~~~~i~  132 (142)
                      .......    ....||+.               ..+.|+.|-+. +++.-...           ..++......+.++.
T Consensus       160 ~~~~~~~----~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~i~~~~~~~~~~~s~~~~~li  235 (273)
T d1xwsa_         160 LLKDTVY----TDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLI  235 (273)
T ss_dssp             ECCSSCB----CCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHHHHCCCCCSSCCCHHHHHHH
T ss_pred             ecccccc----cccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCchHHhhcccCCCCCCCHHHHHHH
Confidence            6544322    12334433               45677655322 11110000           011112234677888


Q ss_pred             HhccCccCCC
Q 043694          133 LLCVQENSND  142 (142)
Q Consensus       133 ~~C~~~~p~~  142 (142)
                      .+|++.||++
T Consensus       236 ~~~L~~dp~~  245 (273)
T d1xwsa_         236 RWCLALRPSD  245 (273)
T ss_dssp             HHHTCSSGGG
T ss_pred             HHHccCCHhH
Confidence            9999999964

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=8.3e-16  Score=106.14  Aligned_cols=72  Identities=29%  Similarity=0.383  Sum_probs=63.3

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCC----ceEEecccc
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDL----KSKISDFGL   77 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~----~~~l~~fg~   77 (142)
                      ..|+|+||+++++        ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++    .+|++|||+
T Consensus        87 ~~~iv~E~~~gg~L~~~i~~~~~l~~~~~~~~~~qi~~al~yLH~~~---ivHrDiKp~Nill~~~~~~~~~vkl~DfG~  163 (293)
T d1jksa_          87 DVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQ---IAHFDLKPENIMLLDRNVPKPRIKIIDFGL  163 (293)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESCSSSSSCCEEECCCTT
T ss_pred             EEEEEEEcCCCccccchhccccccchhHHHHHHHHHHHHHHhhhhcc---eeecccccceEEEecCCCcccceEecchhh
Confidence            5799999998753        46999999999999999999999999   99999999999997654    589999999


Q ss_pred             eeeeecC
Q 043694           78 ARIFVKD   84 (142)
Q Consensus        78 ~~~~~~~   84 (142)
                      +......
T Consensus       164 a~~~~~~  170 (293)
T d1jksa_         164 AHKIDFG  170 (293)
T ss_dssp             CEECTTS
T ss_pred             hhhcCCC
Confidence            9876543

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.57  E-value=3.4e-15  Score=102.19  Aligned_cols=70  Identities=26%  Similarity=0.409  Sum_probs=63.1

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.|+||||++++.        ..+++.++..++.|++.|+.|+|+.+   ++|+|+++.||+++.++..++.+||.+...
T Consensus        85 ~~~lvmE~~~g~~L~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~---iiHrDiKP~NIll~~~~~~~l~d~~~~~~~  161 (277)
T d1o6ya_          85 LPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVKVMDFGIARAI  161 (277)
T ss_dssp             EEEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTSCEEECCCTTCEEC
T ss_pred             eEEEEEECCCCCEehhhhcccCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCccccCcccccCccccceeehhhhhhhh
Confidence            4789999998743        56999999999999999999999998   999999999999999999999999987665


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       162 ~  162 (277)
T d1o6ya_         162 A  162 (277)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.5e-15  Score=103.88  Aligned_cols=71  Identities=31%  Similarity=0.454  Sum_probs=63.5

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ..|+|+||+.++         ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.+...+++|||.+..
T Consensus        75 ~~~iv~e~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~---IiHrDiKpeNIl~~~~~~~kl~DFG~a~~  151 (298)
T d1gz8a_          75 KLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARA  151 (298)
T ss_dssp             EEEEEEECCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECSTTHHHH
T ss_pred             ceeEEEeecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCC---EEccccCchheeecccCcceeccCCccee
Confidence            579999997652         355999999999999999999999999   99999999999999999999999999876


Q ss_pred             eec
Q 043694           81 FVK   83 (142)
Q Consensus        81 ~~~   83 (142)
                      ...
T Consensus       152 ~~~  154 (298)
T d1gz8a_         152 FGV  154 (298)
T ss_dssp             HCC
T ss_pred             ccC
Confidence            543

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.3e-15  Score=104.42  Aligned_cols=72  Identities=24%  Similarity=0.367  Sum_probs=62.8

Q ss_pred             hhhheeeeeCCCcc---------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC--CCceEEecccc
Q 043694            9 LYLYLIFDVDPIRR---------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE--DLKSKISDFGL   77 (142)
Q Consensus         9 ~~~~lv~e~~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~--~~~~~l~~fg~   77 (142)
                      .++|+||||++++.         ..+++.++..++.|++.|+.|||+.+   ++|+|+++.||+++.  ...+++.|||+
T Consensus        74 ~~~~lvmE~~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH~~~---iiHrDlKp~NIll~~~~~~~ikl~DFG~  150 (321)
T d1tkia_          74 EELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHN---IGHFDIRPENIIYQTRRSSTIKIIEFGQ  150 (321)
T ss_dssp             TEEEEEECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSCCCEEECCCTT
T ss_pred             CEEEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcC---CCcccccccceeecCCCceEEEEcccch
Confidence            45899999988642         36999999999999999999999999   999999999999974  45789999999


Q ss_pred             eeeeec
Q 043694           78 ARIFVK   83 (142)
Q Consensus        78 ~~~~~~   83 (142)
                      +.....
T Consensus       151 ~~~~~~  156 (321)
T d1tkia_         151 ARQLKP  156 (321)
T ss_dssp             CEECCT
T ss_pred             hhcccc
Confidence            887654

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.2e-14  Score=102.34  Aligned_cols=72  Identities=31%  Similarity=0.469  Sum_probs=64.1

Q ss_pred             hhheeeeeCCC------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeeec
Q 043694           10 YLYLIFDVDPI------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVK   83 (142)
Q Consensus        10 ~~~lv~e~~~~------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~~   83 (142)
                      ++|+|+||+..      ....|++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++..+++|||.++....
T Consensus        97 ~~~lv~e~~~~~l~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~---IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~  173 (346)
T d1cm8a_          97 DFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAG---IIHRDLKPGNLAVNEDCELKILDFGLARQADS  173 (346)
T ss_dssp             CCEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECCS
T ss_pred             eEEEEEecccccHHHHHHhccccHHHHHHHHHHHHHHHHHHHhCC---CcccccCcchhhcccccccccccccceeccCC
Confidence            46899999854      2356999999999999999999999999   99999999999999999999999999987654


Q ss_pred             C
Q 043694           84 D   84 (142)
Q Consensus        84 ~   84 (142)
                      .
T Consensus       174 ~  174 (346)
T d1cm8a_         174 E  174 (346)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=5e-14  Score=97.35  Aligned_cols=70  Identities=33%  Similarity=0.474  Sum_probs=62.2

Q ss_pred             hhheeeeeCCCc---------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694           10 YLYLIFDVDPIR---------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        10 ~~~lv~e~~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.|+++||+.++         ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++..++.|||.+..
T Consensus        89 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~---ivHrDiKp~NILi~~~~~~kl~dfg~~~~  165 (305)
T d1blxa_          89 KLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLARI  165 (305)
T ss_dssp             EEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECSCCSCCC
T ss_pred             eEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhCC---EEecCCCccEEEEcCCCCeeecchhhhhh
Confidence            468889998763         245899999999999999999999999   99999999999999999999999999876


Q ss_pred             ee
Q 043694           81 FV   82 (142)
Q Consensus        81 ~~   82 (142)
                      ..
T Consensus       166 ~~  167 (305)
T d1blxa_         166 YS  167 (305)
T ss_dssp             CC
T ss_pred             hc
Confidence            54

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.1e-13  Score=96.22  Aligned_cols=72  Identities=32%  Similarity=0.546  Sum_probs=63.2

Q ss_pred             hhhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceee
Q 043694            9 LYLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus         9 ~~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      ...|+++||++.+        ...++...+..++.|++.|+.|||+.+   ++|+|+++.||+++.++.++++|||++..
T Consensus        90 ~~~~iv~e~~~~~~~~~~~~~~~~~~~~~~~~i~~qil~~l~~lH~~~---ivHrDlKp~NILl~~~~~~kl~dfg~~~~  166 (318)
T d3blha1          90 GSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNK---ILHRDMKAANVLITRDGVLKLADFGLARA  166 (318)
T ss_dssp             -CEEEEEECCCEEHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             ceEEEEEeccCCCccchhhhcccccccHHHHHHHHHHHHHHHHhccCC---EEecCcCchheeecCCCcEEeeecceeee
Confidence            3578999997642        356899999999999999999999998   99999999999999999999999999976


Q ss_pred             eec
Q 043694           81 FVK   83 (142)
Q Consensus        81 ~~~   83 (142)
                      +..
T Consensus       167 ~~~  169 (318)
T d3blha1         167 FSL  169 (318)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            543

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=6.5e-14  Score=97.77  Aligned_cols=72  Identities=31%  Similarity=0.351  Sum_probs=63.5

Q ss_pred             hhheeeeeCCCcc--------cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPIRR--------FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~~~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|+++||+.++.        ..++......++.|++.|+.|+|+.+   ++|+|+++.|++++.++.++++|||++..+
T Consensus       103 ~~~~v~e~~~~~~L~~~i~~~~~~~e~~~~~~~~Qi~~al~~lH~~~---ivHrDiKp~Nill~~~~~vkL~DFG~a~~~  179 (322)
T d1vzoa_         103 KLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLG---IIYRDIKLENILLDSNGHVVLTDFGLSKEF  179 (322)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEESCSSEEEEC
T ss_pred             ceeeeeecccccHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcCC---EEeccCCccceeecCCCCEEEeeccchhhh
Confidence            4788899887643        45888999999999999999999999   999999999999999999999999999876


Q ss_pred             ecC
Q 043694           82 VKD   84 (142)
Q Consensus        82 ~~~   84 (142)
                      ...
T Consensus       180 ~~~  182 (322)
T d1vzoa_         180 VAD  182 (322)
T ss_dssp             CGG
T ss_pred             ccc
Confidence            543

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.47  E-value=1.4e-13  Score=96.07  Aligned_cols=72  Identities=22%  Similarity=0.345  Sum_probs=63.2

Q ss_pred             hhheeeeeCCCcc-----cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCC-CceEEecccceeeeec
Q 043694           10 YLYLIFDVDPIRR-----FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDED-LKSKISDFGLARIFVK   83 (142)
Q Consensus        10 ~~~lv~e~~~~~~-----~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~-~~~~l~~fg~~~~~~~   83 (142)
                      ++|+|+||+.++.     ..+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.+ ..++++|||++.....
T Consensus       106 ~~~~v~e~~~~~~L~~~~~~l~e~~i~~i~~qil~aL~~LH~~g---IvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~  182 (328)
T d3bqca1         106 TPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMG---IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHP  182 (328)
T ss_dssp             SEEEEEECCCSCBGGGTTTSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTTEEEECCGGGCEECCT
T ss_pred             ceeEEEeecCCCcHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcc---cccccccccceEEcCCCCeeeecccccceeccC
Confidence            5789999988753     46999999999999999999999999   9999999999999854 5689999999987654


Q ss_pred             C
Q 043694           84 D   84 (142)
Q Consensus        84 ~   84 (142)
                      .
T Consensus       183 ~  183 (328)
T d3bqca1         183 G  183 (328)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.47  E-value=3.3e-14  Score=97.54  Aligned_cols=70  Identities=33%  Similarity=0.477  Sum_probs=61.8

Q ss_pred             hhheeeeeCCC--------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPI--------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      ..|++++++.+        ....+++.++..++.|++.|+.|||+.+   ++|+|+++.||+++.++..+++|||.+...
T Consensus        74 ~~~i~~e~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~---IvHrDiKp~NIll~~~~~~kl~DfG~a~~~  150 (286)
T d1ob3a_          74 RLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRR---VLHRDLKPQNLLINREGELKIADFGLARAF  150 (286)
T ss_dssp             CEEEEEECCSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECCTTHHHHH
T ss_pred             ceeEEEEeehhhhHHHHHhhcCCcchhhhHHHHHHHHHHHHHhccCc---EEecCCCCceeeEcCCCCEEecccccceec
Confidence            46778887665        3466999999999999999999999998   999999999999999999999999998664


Q ss_pred             e
Q 043694           82 V   82 (142)
Q Consensus        82 ~   82 (142)
                      .
T Consensus       151 ~  151 (286)
T d1ob3a_         151 G  151 (286)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.1e-13  Score=97.27  Aligned_cols=59  Identities=39%  Similarity=0.548  Sum_probs=54.6

Q ss_pred             cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeeecC
Q 043694           23 FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVKD   84 (142)
Q Consensus        23 ~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~~~   84 (142)
                      ..+++..+..++.|++.|+.|||+.+   ++|||+++.||+++.++..|++|||++......
T Consensus       104 ~~l~~~~i~~i~~qil~al~yLH~~~---iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~  162 (345)
T d1pmea_         104 QHLSNDHICYFLYQILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADPD  162 (345)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECCGG
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCCCcceEEECCCCCEEEcccCceeeccCC
Confidence            56999999999999999999999998   999999999999999999999999999876543

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=1.4e-14  Score=100.05  Aligned_cols=73  Identities=22%  Similarity=0.356  Sum_probs=62.2

Q ss_pred             hhhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeC---CCCceEEecccc
Q 043694            9 LYLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLD---EDLKSKISDFGL   77 (142)
Q Consensus         9 ~~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~---~~~~~~l~~fg~   77 (142)
                      ...|+|+||+.++        ...+++..+..++.|++.|+.|+|+.+   ++|+|+++.||++.   .+..++++|||+
T Consensus        76 ~~~~ivme~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---iiHrDiKp~NIl~~~~~~~~~vkl~DFG~  152 (299)
T d1ckia_          76 DYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFGL  152 (299)
T ss_dssp             TEEEEEEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECCGGGTTCEEECCCSS
T ss_pred             CEEEEEEEEcCCchhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHCC---eeeccCCHhhccccccCCCceeeeeccCc
Confidence            3577889997653        356999999999999999999999999   99999999999875   356799999999


Q ss_pred             eeeeecC
Q 043694           78 ARIFVKD   84 (142)
Q Consensus        78 ~~~~~~~   84 (142)
                      ++.+...
T Consensus       153 a~~~~~~  159 (299)
T d1ckia_         153 AKKYRDA  159 (299)
T ss_dssp             CEECBCT
T ss_pred             ceecccc
Confidence            9887543

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.41  E-value=6.1e-14  Score=96.66  Aligned_cols=72  Identities=18%  Similarity=0.238  Sum_probs=61.9

Q ss_pred             hhheeeeeCCCc--------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCC-----CCceEEeccc
Q 043694           10 YLYLIFDVDPIR--------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDE-----DLKSKISDFG   76 (142)
Q Consensus        10 ~~~lv~e~~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~-----~~~~~l~~fg   76 (142)
                      ..|+|+||+.++        ...+++.++..++.|++.|+.|+|+.+   ++|+|+++.||+++.     ++.+++.|||
T Consensus        75 ~~~~vme~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH~~g---iiHrDiKp~Nili~~~~~~~~~~vkl~DFG  151 (293)
T d1csna_          75 HNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKS---LVYRDIKPDNFLIGRPNSKNANMIYVVDFG  151 (293)
T ss_dssp             EEEEEEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECCSSSTTTTCEEECCCT
T ss_pred             ccEEEEEecCCCHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCC---ceeccCCccceeecCcccccCCceEEcccc
Confidence            468899997542        356999999999999999999999999   999999999999964     4679999999


Q ss_pred             ceeeeecC
Q 043694           77 LARIFVKD   84 (142)
Q Consensus        77 ~~~~~~~~   84 (142)
                      +++.+...
T Consensus       152 ~a~~~~~~  159 (293)
T d1csna_         152 MVKFYRDP  159 (293)
T ss_dssp             TCEESBCT
T ss_pred             eeEEcccC
Confidence            99886543

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.7e-13  Score=92.23  Aligned_cols=72  Identities=29%  Similarity=0.412  Sum_probs=62.4

Q ss_pred             hhheeeeeCCC--------cccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           10 YLYLIFDVDPI--------RRFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        10 ~~~lv~e~~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.+++++++.+        ....+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.+...++.|||.+...
T Consensus        75 ~~~iv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~q~~~aL~~lH~~~---IvHrDiKP~NIli~~~~~~kl~DFG~a~~~  151 (292)
T d1unla_          75 KLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRN---VLHRDLKPQNLLINRNGELKLANFGLARAF  151 (292)
T ss_dssp             EEEEEEECCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             ceeEEeeeccccccccccccccccchhHHHHHHHHHHHHHHHhhcCC---EeeecccCcccccccCCceeeeecchhhcc
Confidence            45777777654        2356899999999999999999999998   999999999999999999999999999876


Q ss_pred             ecC
Q 043694           82 VKD   84 (142)
Q Consensus        82 ~~~   84 (142)
                      ...
T Consensus       152 ~~~  154 (292)
T d1unla_         152 GIP  154 (292)
T ss_dssp             CSC
T ss_pred             cCC
Confidence            543

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=8.9e-13  Score=92.95  Aligned_cols=72  Identities=32%  Similarity=0.463  Sum_probs=60.1

Q ss_pred             hhhheeeeeCCCc-----ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeeec
Q 043694            9 LYLYLIFDVDPIR-----RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFVK   83 (142)
Q Consensus         9 ~~~~lv~e~~~~~-----~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~~   83 (142)
                      .+.|+|+||+.++     ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++..++++||.++....
T Consensus        95 ~~~~iv~Ey~~~~l~~~~~~~~~~~~i~~~~~qil~gl~~LH~~g---iiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~  171 (355)
T d2b1pa1          95 QDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGT  171 (355)
T ss_dssp             CEEEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCCCC------
T ss_pred             ceeEEEEeccchHHHHhhhcCCCHHHHHHHHHHHHHHHHHhhhcc---cccccCCccccccccccceeeechhhhhcccc
Confidence            3568999998764     245999999999999999999999999   99999999999999999999999998776543

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.3e-12  Score=91.72  Aligned_cols=68  Identities=34%  Similarity=0.379  Sum_probs=55.2

Q ss_pred             heeeeeCCCc-------ccccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           12 YLIFDVDPIR-------RFILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        12 ~lv~e~~~~~-------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      +++++++.++       ...+++..+..++.|++.|+.|||+.+   ++|+|+++.||+++.++..++.+||.+....
T Consensus        98 ~~i~~~~~gg~L~~~~~~~~l~e~~~~~i~~qil~aL~~LH~~g---iiHrDiKp~NILi~~~~~~kl~dfg~a~~~~  172 (348)
T d2gfsa1          98 VYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLARHTD  172 (348)
T ss_dssp             CEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECCC----CCT
T ss_pred             EEEEEeecCCchhhhcccccccHHHHHHHHHHHHHHHHHHHhCC---CcccccCCccccccccccccccccchhcccC
Confidence            4455555543       356999999999999999999999999   9999999999999999999999999987654

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.02  E-value=1e-10  Score=75.40  Aligned_cols=68  Identities=15%  Similarity=0.196  Sum_probs=56.3

Q ss_pred             hheeeeeCCCcc-cccCHHHHHHHHHHHHHHhhhhhccCCCceEecccCCCcEEeCCCCceEEecccceeeee
Q 043694           11 LYLIFDVDPIRR-FILDWKTCIHIIQGITQGLLYLQEYSKLIVIHQDLKASNILLDEDLKSKISDFGLARIFV   82 (142)
Q Consensus        11 ~~lv~e~~~~~~-~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~~   82 (142)
                      .++++||.+... ..++......++.+++.++.|+|..+   ++|+|++|.||+++.+ ..++.|||.+....
T Consensus        85 ~~lvme~~~~~~~~~l~~~~~~~i~~ql~~~l~~lH~~g---iiHrDiKP~NILv~~~-~~~liDFG~a~~~~  153 (191)
T d1zara2          85 NAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHRG---IVHGDLSQYNVLVSEE-GIWIIDFPQSVEVG  153 (191)
T ss_dssp             TEEEEECCCCEEGGGCCCSCHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEEEETT-EEEECCCTTCEETT
T ss_pred             CEEEEEeeccccccchhhHHHHHHHHHHHHHHHHHhhCC---EEEccCChhheeeeCC-CEEEEECCCcccCC
Confidence            357889887643 33677777889999999999999999   9999999999999854 47889999886553

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.97  E-value=6.4e-10  Score=77.91  Aligned_cols=58  Identities=26%  Similarity=0.350  Sum_probs=49.9

Q ss_pred             ccccCHHHHHHHHHHHHHHhhhhhc-cCCCceEecccCCCcEEeCCCC------ceEEecccceeeee
Q 043694           22 RFILDWKTCIHIIQGITQGLLYLQE-YSKLIVIHQDLKASNILLDEDL------KSKISDFGLARIFV   82 (142)
Q Consensus        22 ~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~~l~~~nil~~~~~------~~~l~~fg~~~~~~   82 (142)
                      ...+++..+..++.|++.|+.|+|+ .+   ++|+|+++.||+++.++      ..++.|||.+....
T Consensus       119 ~~~~~~~~i~~i~~qil~al~~lh~~~~---IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~  183 (362)
T d1q8ya_         119 HRGIPLIYVKQISKQLLLGLDYMHRRCG---IIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYD  183 (362)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHTTC---EECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETT
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHhhhcC---cccccCChhHeeeeccCcccccceeeEeecccccccc
Confidence            3568999999999999999999997 77   99999999999997543      38999999987654

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=84.13  E-value=0.26  Score=32.44  Aligned_cols=30  Identities=37%  Similarity=0.329  Sum_probs=26.1

Q ss_pred             ceEecccCCCcEEeCCCCceEEecccceee
Q 043694           51 IVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        51 ~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +++|+|+...|++++.+....+.||+.+..
T Consensus       184 giIHgDl~~dNvl~~~~~v~gvIDF~~~~~  213 (316)
T d2ppqa1         184 GVIHADLFQDNVFFLGDELSGLIDFYFACN  213 (316)
T ss_dssp             EEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             ccccCCcchhhhhcccccceeEeccccccc
Confidence            589999999999999888788999986653

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=84.11  E-value=0.63  Score=29.38  Aligned_cols=32  Identities=31%  Similarity=0.395  Sum_probs=26.1

Q ss_pred             CceEecccCCCcEEeCCCCceEEecccceeee
Q 043694           50 LIVIHQDLKASNILLDEDLKSKISDFGLARIF   81 (142)
Q Consensus        50 ~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~~   81 (142)
                      +.++|+|+.+.|++++.+....+.||..+..-
T Consensus       183 ~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~~g  214 (263)
T d1j7la_         183 LVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRA  214 (263)
T ss_dssp             EEEECSCCCTTSEEEETTEEEEECCCTTCEEE
T ss_pred             cEEEEeeccCcceeecCCceEEEeechhcccC
Confidence            34899999999999987766779999876543

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=83.53  E-value=0.27  Score=31.11  Aligned_cols=31  Identities=29%  Similarity=0.377  Sum_probs=25.6

Q ss_pred             CceEecccCCCcEEeCCCCceEEecccceee
Q 043694           50 LIVIHQDLKASNILLDEDLKSKISDFGLARI   80 (142)
Q Consensus        50 ~~i~h~~l~~~nil~~~~~~~~l~~fg~~~~   80 (142)
                      +.++|+|+.+.|++++.+....+.||+.+..
T Consensus       175 ~~liHgD~~~~Nvl~~~~~~~~iID~~~~~~  205 (255)
T d1nd4a_         175 LVVTHGDACLPNIMVENGRFSGFIDCGRLGV  205 (255)
T ss_dssp             EEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             ceEEeCCCCCcceEEeCCceEEEEEchhccc
Confidence            3579999999999998776677899987654