BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043696
(521 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U2T|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese
Length = 284
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 112/234 (47%), Gaps = 15/234 (6%)
Query: 177 AKENFYSERARREAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGG 236
EN Y + +A+ T L + Y GA+ S++ +TR LV+L +SD R
Sbjct: 14 GTENLYFQSMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKV 72
Query: 237 LEAAGWKIHTIQRIRNPKAERDAYNE-----WNYSKFRLWQLTDYDKIIFIDADLLILRN 291
LE ++ + + + + + +K W LT Y K +F+DAD L+L N
Sbjct: 73 LETVFDEVIMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLAN 132
Query: 292 IDFLFEMPEITATGNNA--TLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEI 349
ID LF+ E++A + FNSGV V +PS T+ L+ E S++GGDQG LN
Sbjct: 133 IDDLFDREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTF 192
Query: 350 FTWWHR--IPKHMNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLGN-KPW 400
F+ W I KH+ F+ + ++FGA V+H+LG KPW
Sbjct: 193 FSSWATTDIRKHLPFIYNL-SSISIYSYLPAFKVFGASAK---VVHFLGRVKPW 242
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Asn
Length = 353
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 107/222 (48%), Gaps = 15/222 (6%)
Query: 189 EAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTIQ 248
+A+ T L + Y GA+ S++ ++R L +L +SD R LE ++ T+
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 249 RIRNPKAERDAYNE-----WNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITA 303
+ + + + +K W LT Y K +F+DAD L+L NID LFE E++A
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 304 TGNNA--TLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHR--IPKH 359
+ FNSGV V +PS T+ L+ E S+NGGDQG LN F W I KH
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFNGGDQGLLNTFFNSWATTDIRKH 202
Query: 360 MNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLG-NKPW 400
+ F+ + + FGA+ V+H+LG KPW
Sbjct: 203 LPFIYNL-SSISIYSYLPAFKAFGANAK---VVHFLGQTKPW 240
>pdb|3T7M|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Triclinic Closed Form
pdb|3T7M|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Triclinic Closed Form
pdb|3T7N|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Monoclinic Closed Form
pdb|3T7N|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Monoclinic Closed Form
pdb|3T7O|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp-Glucose And Glucose
pdb|3T7O|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp-Glucose And Glucose
pdb|3U2U|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltotetraose
pdb|3U2U|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltotetraose
pdb|3U2X|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And 1'-Deoxyglucose
pdb|3U2X|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And 1'-Deoxyglucose
pdb|3U2V|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltohexaose
pdb|3U2V|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltohexaose
Length = 263
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 15/222 (6%)
Query: 189 EAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTIQ 248
+A+ T L + Y GA+ S++ +TR LV+L +SD R LE ++ +
Sbjct: 5 QAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVD 63
Query: 249 RIRNPKAERDAYNE-----WNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITA 303
+ + + + +K W LT Y K +F+DAD L+L NID LF+ E++A
Sbjct: 64 VLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSA 123
Query: 304 TGNNA--TLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHR--IPKH 359
+ FNSGV V +PS T+ L+ E S++GGDQG LN F+ W I KH
Sbjct: 124 APDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKH 183
Query: 360 MNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLGN-KPW 400
+ F+ + ++FGA V+H+LG KPW
Sbjct: 184 LPFIYNL-SSISIYSYLPAFKVFGASAK---VVHFLGRVKPW 221
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|B Chain B, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|C Chain C, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|D Chain D, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|E Chain E, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|F Chain F, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|G Chain G, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|H Chain H, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|I Chain I, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|J Chain J, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 339
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 107/222 (48%), Gaps = 15/222 (6%)
Query: 189 EAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTIQ 248
+A+ T L + Y GA+ S++ ++R L +L +SD R LE ++ T+
Sbjct: 10 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 68
Query: 249 RIRNPKAERDAYNE-----WNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITA 303
+ + + + +K W LT Y K +F+DAD L+L NID LFE E++A
Sbjct: 69 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 128
Query: 304 TGNNA--TLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHR--IPKH 359
+ FNSGV V +PS T+ L+ E S++GGDQG LN F W I KH
Sbjct: 129 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 188
Query: 360 MNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLG-NKPW 400
+ F+ + + FGA+ V+H+LG KPW
Sbjct: 189 LPFIYNL-SSISIYSYLPAFKAFGANAK---VVHFLGQTKPW 226
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed
With Udp- Glucose And Manganese
pdb|1LL3|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 333
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 107/222 (48%), Gaps = 15/222 (6%)
Query: 189 EAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTIQ 248
+A+ T L + Y GA+ S++ ++R L +L +SD R LE ++ T+
Sbjct: 4 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 62
Query: 249 RIRNPKAERDAYNE-----WNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITA 303
+ + + + +K W LT Y K +F+DAD L+L NID LFE E++A
Sbjct: 63 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 122
Query: 304 TGNNA--TLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHR--IPKH 359
+ FNSGV V +PS T+ L+ E S++GGDQG LN F W I KH
Sbjct: 123 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 182
Query: 360 MNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLG-NKPW 400
+ F+ + + FGA+ V+H+LG KPW
Sbjct: 183 LPFIYNL-SSISIYSYLPAFKAFGANAK---VVHFLGQTKPW 220
>pdb|3V8Y|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270
pdb|3V8Z|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270
Complexed With Udp
Length = 291
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 107/222 (48%), Gaps = 15/222 (6%)
Query: 189 EAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTIQ 248
+A+ T L + Y GA+ S++ ++R L +L +SD R LE ++ T+
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 249 RIRNPKAERDAYNE-----WNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITA 303
+ + + + +K W LT Y K +F+DAD L+L NID LFE E++A
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 304 TGNNA--TLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHR--IPKH 359
+ FNSGV V +PS T+ L+ E S++GGDQG LN F W I KH
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 202
Query: 360 MNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLG-NKPW 400
+ F+ + + FGA+ V+H+LG KPW
Sbjct: 203 LPFIYNL-SSISIYSYLPAFKAFGANAK---VVHFLGQTKPW 240
>pdb|1ZCT|A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A
Complex With Udp
pdb|1ZCT|B Chain B, Structure Of Glycogenin Truncated At Residue 270 In A
Complex With Udp
Length = 290
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 107/222 (48%), Gaps = 15/222 (6%)
Query: 189 EAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTIQ 248
+A+ T L + Y GA+ S++ ++R L +L +SD R LE ++ T+
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 249 RIRNPKAERDAYNE-----WNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITA 303
+ + + + +K W LT Y K +F+DAD L+L NID LFE E++A
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 304 TGNNA--TLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHR--IPKH 359
+ FNSGV V +PS T+ L+ E S++GGDQG LN F W I KH
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 202
Query: 360 MNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLG-NKPW 400
+ F+ + + FGA+ V+H+LG KPW
Sbjct: 203 LPFIYNL-SSISIYSYLPAFKAFGANAK---VVHFLGQTKPW 240
>pdb|3Q4S|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form
pdb|3QVB|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp
pdb|3U2W|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Glucose Or A Glucal Species
pdb|3U2W|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Glucose Or A Glucal Species
Length = 263
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 15/222 (6%)
Query: 189 EAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTIQ 248
+A+ T L + Y GA+ S++ +TR LV+L +SD R LE ++ +
Sbjct: 5 QAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVD 63
Query: 249 RIRNPKAERDAYNE-----WNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITA 303
+ + + + +K W LT Y K +F+DAD L+L NID LF+ E++A
Sbjct: 64 VLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSA 123
Query: 304 TGNNA--TLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHR--IPKH 359
+ FNSGV V +PS T+ L+ E S++GGDQG LN F+ W I KH
Sbjct: 124 APDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKH 183
Query: 360 MNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLGN-KPW 400
+ F+ + ++FGA V+H+LG KPW
Sbjct: 184 LPFIYNL-SSISIFSYLPAFKVFGASAK---VVHFLGRVKPW 221
>pdb|3USR|A Chain A, Structure Of Y194f Glycogenin Mutant Truncated At Residue
270
Length = 291
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 107/222 (48%), Gaps = 15/222 (6%)
Query: 189 EAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTIQ 248
+A+ T L + Y GA+ S++ ++R L +L +SD R LE ++ T+
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 249 RIRNPKAERDAYNE-----WNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITA 303
+ + + + +K W LT Y K +F+DAD L+L NID LFE E++A
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 304 TGNNA--TLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHR--IPKH 359
+ FNSGV V +PS T+ L+ E S++GGDQG LN F W I KH
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 202
Query: 360 MNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLG-NKPW 400
+ F+ + + FGA+ V+H+LG KPW
Sbjct: 203 LPFIYNL-SSISIFSYLPAFKAFGANAK---VVHFLGQTKPW 240
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Ser
pdb|1ZDG|A Chain A, Ser159 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 107/222 (48%), Gaps = 15/222 (6%)
Query: 189 EAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTIQ 248
+A+ T L + Y GA+ S++ ++R L +L +SD R LE ++ T+
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 249 RIRNPKAERDAYNE-----WNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITA 303
+ + + + +K W LT Y K +F+DAD L+L NID LFE E++A
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 304 TGNNA--TLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHR--IPKH 359
+ FNSGV V +PS T+ L+ E S++GGDQG LN F W I KH
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFSGGDQGLLNTFFNSWATTDIRKH 202
Query: 360 MNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLG-NKPW 400
+ F+ + + FGA+ V+H+LG KPW
Sbjct: 203 LPFIYNL-SSISIYSYLPAFKAFGANAK---VVHFLGQTKPW 240
>pdb|3USQ|A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT
RESIDUE 270
Length = 291
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 107/222 (48%), Gaps = 15/222 (6%)
Query: 189 EAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTIQ 248
+A+ T L + Y GA+ S++ ++R L +L +SD R LE ++ T+
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 249 RIRNPKAERDAYNE-----WNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITA 303
+ + + + +K W LT Y K +F+DAD L+L NID LFE E++A
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 304 TGNNA--TLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHR--IPKH 359
+ FNSGV V +PS T+ L+ E S++GGDQG LN F W I KH
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFSGGDQGLLNTFFNSWATTDIRKH 202
Query: 360 MNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLG-NKPW 400
+ F+ + + FGA+ V+H+LG KPW
Sbjct: 203 LPFIYNL-SSISIFSYLPAFKAFGANAK---VVHFLGQTKPW 240
>pdb|3RMW|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant
Complexed With Manganese And Udp-Glucose
pdb|3RMV|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant
Complexed With Manganese And Udp
Length = 263
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 15/222 (6%)
Query: 189 EAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTIQ 248
+A+ T L + Y GA+ S++ +TR LV+L +SD R LE ++ +
Sbjct: 5 QAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVD 63
Query: 249 RIRNPKAERDAYNE-----WNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITA 303
+ + + + +K W LT Y K +F+DAD L+L NID LF+ E++A
Sbjct: 64 VLDSGDSAHLTLMKRPELGVMLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSA 123
Query: 304 TGNNA--TLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHR--IPKH 359
+ FNSGV V +PS T+ L+ E S++GGDQG LN F+ W I KH
Sbjct: 124 APDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKH 183
Query: 360 MNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLGN-KPW 400
+ F+ + ++FGA V+H+LG KPW
Sbjct: 184 LPFIYNL-SSISIYSYLPAFKVFGASAK---VVHFLGRVKPW 221
>pdb|3V90|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue
270
pdb|3V91|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue
270 Complexed With Udp-Glucose
Length = 291
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 107/222 (48%), Gaps = 15/222 (6%)
Query: 189 EAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTIQ 248
+A+ T L + Y GA+ S++ ++R L +L +SD R LE ++ T+
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 249 RIRNPKAERDAYNE-----WNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITA 303
+ + + + +K W LT Y K +F+DAD L+L NID LFE E++A
Sbjct: 83 ILDSGDSAHLTLMKRPELGVMLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 304 TGNNA--TLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHR--IPKH 359
+ FNSGV V +PS T+ L+ E S++GGDQG LN F W I KH
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 202
Query: 360 MNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLG-NKPW 400
+ F+ + + FGA+ V+H+LG KPW
Sbjct: 203 LPFIYNL-SSISIYSYLPAFKAFGANAK---VVHFLGQTKPW 240
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin
pdb|1ZDF|A Chain A, Ser162 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 106/222 (47%), Gaps = 15/222 (6%)
Query: 189 EAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTIQ 248
+A+ T L + Y GA+ S++ ++R L +L +SD R LE ++ T+
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 249 RIRNPKAERDAYNE-----WNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITA 303
+ + + + +K W LT Y K +F+DAD L+L NID LFE E++A
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 304 TGNNA--TLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHR--IPKH 359
+ FNSGV V +PS T+ L+ E S++GG QG LN F W I KH
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGSQGLLNTFFNSWATTDIRKH 202
Query: 360 MNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLG-NKPW 400
+ F+ + + FGA+ V+H+LG KPW
Sbjct: 203 LPFIYNL-SSISIYSYLPAFKAFGANAK---VVHFLGQTKPW 240
>pdb|2E26|A Chain A, Crystal Structure Of Two Repeat Fragment Of Reelin
Length = 725
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 170 ELAVPLKAKENFYSERARREAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETI 229
E ++P + K+NF + + + T+ VCGA+A+ ++ +G L++ VD +
Sbjct: 567 ETSLPTQLKDNF-NRAPSNQNWLTVSGGKLSTVCGAVASGLALHFSGGCSRLLVTVDLNL 625
Query: 230 SD 231
++
Sbjct: 626 TN 627
>pdb|3A7Q|A Chain A, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 725
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 170 ELAVPLKAKENFYSERARREAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETI 229
E ++P + K+NF + + + T+ VCGA+A+ ++ +G L++ VD +
Sbjct: 567 ETSLPTQLKDNF-NRAPSNQNWLTVSGGKLSTVCGAVASGLALHFSGGCSRLLVTVDLNL 625
Query: 230 SD 231
++
Sbjct: 626 TN 627
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,695,458
Number of Sequences: 62578
Number of extensions: 727095
Number of successful extensions: 1614
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1572
Number of HSP's gapped (non-prelim): 16
length of query: 521
length of database: 14,973,337
effective HSP length: 103
effective length of query: 418
effective length of database: 8,527,803
effective search space: 3564621654
effective search space used: 3564621654
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)