Query 043698
Match_columns 171
No_of_seqs 131 out of 1052
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 07:28:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043698.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043698hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00689 Cation_ATPase_C: Cati 100.0 9.9E-36 2.1E-40 223.6 14.6 157 1-157 16-182 (182)
2 KOG0202 Ca2+ transporting ATPa 100.0 2.4E-31 5.3E-36 230.5 5.3 162 1-162 782-970 (972)
3 TIGR01522 ATPase-IIA2_Ca golgi 100.0 3.7E-29 8.1E-34 226.1 17.2 159 1-161 722-883 (884)
4 TIGR01523 ATPase-IID_K-Na pota 100.0 1.1E-28 2.4E-33 225.5 15.9 160 1-162 855-1049(1053)
5 TIGR01116 ATPase-IIA1_Ca sarco 100.0 5.9E-28 1.3E-32 218.9 17.5 158 1-159 734-917 (917)
6 TIGR01517 ATPase-IIB_Ca plasma 99.9 9.3E-27 2E-31 211.7 16.9 159 1-159 773-940 (941)
7 KOG0204 Calcium transporting A 99.9 8.8E-27 1.9E-31 202.5 4.9 163 1-163 843-1011(1034)
8 TIGR01106 ATPase-IIC_X-K sodiu 99.9 1.7E-24 3.7E-29 197.8 17.7 161 1-162 788-987 (997)
9 KOG0203 Na+/K+ ATPase, alpha s 99.9 6.2E-25 1.3E-29 190.9 3.7 164 1-165 810-1012(1019)
10 PRK15122 magnesium-transportin 99.9 4.7E-21 1E-25 173.6 15.5 152 1-161 741-898 (903)
11 TIGR01524 ATPase-IIIB_Mg magne 99.8 4.9E-18 1.1E-22 153.7 14.7 149 1-162 706-864 (867)
12 PRK10517 magnesium-transportin 99.8 3.9E-18 8.4E-23 154.7 13.8 147 1-161 741-898 (902)
13 COG0474 MgtA Cation transport 99.7 6.5E-17 1.4E-21 147.0 15.8 155 1-156 744-912 (917)
14 TIGR01657 P-ATPase-V P-type AT 99.3 8E-12 1.7E-16 115.6 11.5 134 1-140 901-1050(1054)
15 TIGR01647 ATPase-IIIA_H plasma 98.8 5.6E-08 1.2E-12 87.6 11.4 108 1-119 637-752 (755)
16 TIGR01652 ATPase-Plipid phosph 97.8 0.00036 7.8E-09 65.4 12.4 53 1-53 875-933 (1057)
17 KOG0209 P-type ATPase [Inorgan 90.6 9.1 0.0002 35.6 12.8 68 93-160 1075-1150(1160)
18 KOG0210 P-type ATPase [Inorgan 84.4 8.7 0.00019 35.1 8.8 92 66-168 955-1048(1051)
19 PLN03190 aminophospholipid tra 71.2 73 0.0016 31.1 11.5 49 4-53 981-1036(1178)
20 PRK05470 fumarate reductase su 59.4 21 0.00046 24.9 4.1 28 19-46 1-33 (118)
21 PF10183 ESSS: ESSS subunit of 59.3 40 0.00086 22.9 5.5 42 13-55 37-78 (105)
22 KOG0208 Cation transport ATPas 48.7 73 0.0016 30.4 6.9 126 4-134 955-1095(1140)
23 PF06609 TRI12: Fungal trichot 42.9 2.5E+02 0.0055 25.3 14.2 99 35-133 235-347 (599)
24 PF11804 DUF3325: Protein of u 41.6 1.1E+02 0.0024 20.8 5.9 24 3-26 11-34 (106)
25 PF06570 DUF1129: Protein of u 34.7 2E+02 0.0044 21.7 13.5 27 16-43 60-86 (206)
26 PF07760 DUF1616: Protein of u 33.3 1.3E+02 0.0027 24.2 5.5 22 110-131 60-81 (287)
27 TIGR00383 corA magnesium Mg(2+ 30.5 1.9E+02 0.0041 23.2 6.2 24 137-160 292-315 (318)
28 PF02313 Fumarate_red_D: Fumar 27.5 14 0.00031 25.8 -0.8 12 19-30 1-12 (118)
29 TIGR02230 ATPase_gene1 F0F1-AT 24.6 2.3E+02 0.005 19.2 5.9 35 122-160 65-99 (100)
30 PF08510 PIG-P: PIG-P; InterP 24.5 2.4E+02 0.0052 19.6 5.0 28 118-146 25-54 (126)
31 PF12725 DUF3810: Protein of u 22.3 1.2E+02 0.0026 24.8 3.6 30 122-151 13-42 (318)
32 COG4280 Predicted membrane pro 22.2 3.8E+02 0.0081 20.8 5.9 51 106-158 37-87 (236)
33 COG1826 TatA Sec-independent p 20.6 93 0.002 20.6 2.2 17 132-148 4-20 (94)
34 PF10856 DUF2678: Protein of u 20.6 79 0.0017 22.1 1.8 37 125-161 50-86 (118)
35 PF05570 DUF765: Circovirus pr 20.2 49 0.0011 16.6 0.5 15 12-26 8-22 (29)
36 PRK09546 zntB zinc transporter 20.0 3.3E+02 0.0072 22.0 5.8 15 122-136 279-295 (324)
No 1
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=100.00 E-value=9.9e-36 Score=223.65 Aligned_cols=157 Identities=36% Similarity=0.543 Sum_probs=132.9
Q ss_pred CchhhhhhhcCCCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcc-------chhhHHH
Q 043698 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRSIFGVNES-------VKDTMIF 73 (171)
Q Consensus 1 tD~~palaL~~ep~~~~~M~r~PR~~~~~i~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~-------~a~T~~F 73 (171)
+|++||+++|+||+|+|+|+||||+++|+++|++++.+++.+|++++++++..|++....+|.+.. ++||++|
T Consensus 16 ~d~~~a~al~~e~~~~~im~r~Pr~~~~~l~~~~~~~~i~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~T~~F 95 (182)
T PF00689_consen 16 TDLLPALALGFEPPDPDIMKRPPRDPNEPLINKRLLRRILIQGLIMAAACFFAFFLGLYIFGWDEETNNDNLAQAQTMAF 95 (182)
T ss_dssp TTHHHHHHGGGSS-STTGGGS---TTTS-SSSHHHHHHHCCHHHHHHHHHHHHHHHHHHSTCSSSHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCcchhhhhhccccccchhhccHHhHhHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999876653344333 4999999
Q ss_pred HHHHHHHHHHHHHhhccCCcccc-ccccccHHHHHHHHHHHHHHHH--HHHhhhhhcccccCChhHHHHHHHHHHHHHHH
Q 043698 74 NTFVLCQIFNEFNARKLEKKNIF-KGIHKNKLFLAIIGITIVLQLI--MVEFLKKFADTERLNWGQWAACIGIAAMSWPI 150 (171)
Q Consensus 74 ~~lv~~q~~~~~~~Rs~~~~~~~-~~~~~N~~l~~~i~~~~~l~~~--~vp~l~~~f~~~~l~~~~w~~~~~~~~~~~~~ 150 (171)
++++++|++|++++|+.+++.+. .+.++|+++++++++++++|++ ++|+++++|++.|+++.+|+++++.+++.+++
T Consensus 96 ~~lv~~q~~~~~~~r~~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~i~~~P~~~~~f~~~~l~~~~w~~~l~~~~~~~~~ 175 (182)
T PF00689_consen 96 TALVLSQLFNAFNCRSRRRSVFRFRGIFSNKWLLIAILISIALQILIVYVPGLNRIFGTAPLPLWQWLICLALALLPFIV 175 (182)
T ss_dssp HHHHHHHHHHHHHTSSSSSTCTT-STGGGSHHHHHHHHHHHHHHHHHHHSTTHHHHST----THHHHHCHHHHHCHHHHH
T ss_pred HHHHHHHHhhhcccccccccceecccccccchHHHHHHHHHHHHHHHhcchhhHhhhcccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999996654444 5888999999999999999875 47899999999999999999999999999999
Q ss_pred HHHHHhc
Q 043698 151 GFLFKCI 157 (171)
Q Consensus 151 ~e~~K~i 157 (171)
+|++|++
T Consensus 176 ~ei~K~i 182 (182)
T PF00689_consen 176 DEIRKLI 182 (182)
T ss_dssp HHHHHHH
T ss_pred HHHHHHC
Confidence 9999985
No 2
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.4e-31 Score=230.53 Aligned_cols=162 Identities=21% Similarity=0.220 Sum_probs=144.3
Q ss_pred CchhhhhhhcCCCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-----------------
Q 043698 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRSIFGV----------------- 63 (171)
Q Consensus 1 tD~~palaL~~ep~~~~~M~r~PR~~~~~i~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~----------------- 63 (171)
||++||.+||+||+|+|+|+||||++++++++++++.+++..|.++..+++++|.+.+...+.
T Consensus 782 tDG~PA~aLG~ep~D~DiM~kpPR~~~~~iit~~l~~r~l~~g~~vg~~Tv~~f~~~~~~~~~~vt~~~~~~~~~c~~~~ 861 (972)
T KOG0202|consen 782 TDGPPATALGFEPVDPDIMKKPPRDSKDGIITGWLIFRYLAIGIIVGVATVGVFVWWMYGADGKVTYRQLAHYNSCCRDF 861 (972)
T ss_pred ccCCchhhcCCCCCChhHHhCCCCCCCCCeeeHHHHHHHHHhheeeeeeEhHhhhHHHhcCCCCcChhhhcchhhhcccc
Confidence 799999999999999999999999999999999999999999999999888887654431110
Q ss_pred --------CccchhhHHHHHHHHHHHHHHHHhhccCCccccccccccHHHHHHHHHHHHHHH--HHHHhhhhhcccccCC
Q 043698 64 --------NESVKDTMIFNTFVLCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQL--IMVEFLKKFADTERLN 133 (171)
Q Consensus 64 --------~~~~a~T~~F~~lv~~q~~~~~~~Rs~~~~~~~~~~~~N~~l~~~i~~~~~l~~--~~vp~l~~~f~~~~l~ 133 (171)
+...+.||+|.++|+..++|+++|||+.++.+..++++|+|+.+++++++++|. +|+|++|.+|++.||+
T Consensus 862 ~~~~c~~F~~~~~~tMa~tv~V~~emfNaL~~~se~~slf~~~~~~N~~l~~ai~~S~~~~f~ilYvp~l~~iFq~~~l~ 941 (972)
T KOG0202|consen 862 YGSRCAVFEDMCPLTMALTVLVFIEMFNALNCLSENKSLFTMPPWSNRWLLWAIALSFVLHFLVLYVPPLQRIFQTEPLS 941 (972)
T ss_pred cccchhhhcccccceEEEeehhHHHHHHHhhcccCCcceEEecccccHHHHHHHHHHHHhhheEEEechhhhhheecCCc
Confidence 122455999999999999999999998775566799999999999999999997 4689999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccCCc
Q 043698 134 WGQWAACIGIAAMSWPIGFLFKCIPVSGT 162 (171)
Q Consensus 134 ~~~w~~~~~~~~~~~~~~e~~K~i~r~~~ 162 (171)
+.||+.++.++..+++++|++|++.|++.
T Consensus 942 ~~ew~~vl~~s~~V~i~dEilK~~~R~~~ 970 (972)
T KOG0202|consen 942 LAEWLLVLAISSPVIIVDEILKFIARNYF 970 (972)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHhcc
Confidence 99999999999999999999999999753
No 3
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=99.96 E-value=3.7e-29 Score=226.07 Aligned_cols=159 Identities=27% Similarity=0.342 Sum_probs=141.1
Q ss_pred CchhhhhhhcCCCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhHHHHHHHHHH
Q 043698 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRSIFGVNESVKDTMIFNTFVLCQ 80 (171)
Q Consensus 1 tD~~palaL~~ep~~~~~M~r~PR~~~~~i~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~a~T~~F~~lv~~q 80 (171)
+|++|+++|++||||+++|+||||+++++++++.++.+++.+|+++++++++.|.+.+.. +....+++|++|++++++|
T Consensus 722 ~d~~~a~~l~~e~~~~~~m~~~P~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~t~~f~~~v~~q 800 (884)
T TIGR01522 722 MDGPPAQSLGVEPVDKDVMRKPPRPRNDKILTKDLIKKILVSAIIIVVGTLFVFVREMQD-GVITARDTTMTFTCFVFFD 800 (884)
T ss_pred HHhhHHHHhccCCCChhHhhCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcchhhHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999998888887765421 2223468999999999999
Q ss_pred HHHHHHhhccCCcccc-ccccccHHHHHHHHHHHHHHHH--HHHhhhhhcccccCChhHHHHHHHHHHHHHHHHHHHHhc
Q 043698 81 IFNEFNARKLEKKNIF-KGIHKNKLFLAIIGITIVLQLI--MVEFLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCI 157 (171)
Q Consensus 81 ~~~~~~~Rs~~~~~~~-~~~~~N~~l~~~i~~~~~l~~~--~vp~l~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~i 157 (171)
++|.++||+.+ .+++ .+.++|++++.++++++++|++ ++|+++++|++.|+++.+|++++++++..+++.|++|++
T Consensus 801 ~~~~~~~r~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~~~~k~~ 879 (884)
T TIGR01522 801 MFNALACRSQT-KSVFEIGFFSNRMFNYAVGGSIIGQLLVIYFPPLQSVFQTEALSIKDLLFLLLITSSVCIVDEIRKKV 879 (884)
T ss_pred HHHHHHHccCC-ccccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999964 4656 4778999999999999999975 479999999999999999999999999999999999999
Q ss_pred ccCC
Q 043698 158 PVSG 161 (171)
Q Consensus 158 ~r~~ 161 (171)
+|++
T Consensus 880 ~~~~ 883 (884)
T TIGR01522 880 ERSR 883 (884)
T ss_pred Hhhc
Confidence 8764
No 4
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=99.96 E-value=1.1e-28 Score=225.54 Aligned_cols=160 Identities=14% Similarity=0.202 Sum_probs=137.6
Q ss_pred CchhhhhhhcCCCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccc--C--------------CC
Q 043698 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRSIF--G--------------VN 64 (171)
Q Consensus 1 tD~~palaL~~ep~~~~~M~r~PR~~~~~i~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~--~--------------~~ 64 (171)
||++|+++||+||||+|+|+||||+++++++++.++.+++.+|+++++++++.|++.+..+ | .+
T Consensus 855 ~d~~palaL~~e~~~~~~m~~~Pr~~~~~l~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1053)
T TIGR01523 855 TSCFPAMGLGLEKAAPDLMDRLPHDNEVGIFQKELIIDMFAYGFFLGGSCLASFTGILYGFGSGNLGHDCDAHYHAGCND 934 (1053)
T ss_pred HHHHHHHhhccCCCChhHHhcCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccccccccccc
Confidence 5899999999999999999999999999999999999999999999999888876321100 1 02
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhccCCcccc-c---------------cccccHHHHHHHHHHHHHHHH--HHHhhhh-
Q 043698 65 ESVKDTMIFNTFVLCQIFNEFNARKLEKKNIF-K---------------GIHKNKLFLAIIGITIVLQLI--MVEFLKK- 125 (171)
Q Consensus 65 ~~~a~T~~F~~lv~~q~~~~~~~Rs~~~~~~~-~---------------~~~~N~~l~~~i~~~~~l~~~--~vp~l~~- 125 (171)
..+|||++|.+++++|++|+++||+.+. +++ . +.++||+++++++++++++++ ++|++|+
T Consensus 935 ~~~a~t~~f~~l~~~~~~~~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~~~~p~~~~~ 1013 (1053)
T TIGR01523 935 VFKARSAAFATMTFCALILAVEVKDFDN-SFFNLHGIPDGDSNFKEFFHSIVENKFLAWAIAFAAVSAFPTIYIPVINDD 1013 (1053)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCch-hhhhcCccccccccccccccCCccCHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3578999999999999999999999654 433 2 367999999999999999864 5899996
Q ss_pred hcccccCChhHHHHHHHHHHHHHHHHHHHHhcccCCc
Q 043698 126 FADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSGT 162 (171)
Q Consensus 126 ~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~i~r~~~ 162 (171)
+|++.|+++ +|+.++++++.++++.|++|+++|+++
T Consensus 1014 ~f~~~~l~~-~w~~~~~~~~~~~~~~e~~K~~~r~~~ 1049 (1053)
T TIGR01523 1014 VFKHKPIGA-EWGLAAAATIAFFFGAEIWKCGKRRLF 1049 (1053)
T ss_pred hhccCCcch-HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999996 899999999999999999999987664
No 5
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=99.96 E-value=5.9e-28 Score=218.90 Aligned_cols=158 Identities=21% Similarity=0.314 Sum_probs=138.1
Q ss_pred CchhhhhhhcCCCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-----------------
Q 043698 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRSIFGV----------------- 63 (171)
Q Consensus 1 tD~~palaL~~ep~~~~~M~r~PR~~~~~i~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~----------------- 63 (171)
+|++|+++|+.||||+++|+||||++++++++++++.+++..|+++++++++.|.+.....|.
T Consensus 734 ~d~lp~~~l~~~~~~~~~m~~pP~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (917)
T TIGR01116 734 TDGLPATALGFNPPDKDIMWKPPRRPDEPLITGWLFFRYLVVGVYVGLATVGGFVWWYLLTHFTGCDEDSFTTCPDFEDP 813 (917)
T ss_pred HHHHHHHHHhcCCcchhHhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccccccc
Confidence 589999999999999999999999999999999999999999999998877776542211010
Q ss_pred ------CccchhhHHHHHHHHHHHHHHHHhhccCCcccc-ccccccHHHHHHHHHHHHHHHHH--HHhhhhhcccccCCh
Q 043698 64 ------NESVKDTMIFNTFVLCQIFNEFNARKLEKKNIF-KGIHKNKLFLAIIGITIVLQLIM--VEFLKKFADTERLNW 134 (171)
Q Consensus 64 ------~~~~a~T~~F~~lv~~q~~~~~~~Rs~~~~~~~-~~~~~N~~l~~~i~~~~~l~~~~--vp~l~~~f~~~~l~~ 134 (171)
+...+||++|++++++|++|.++||+.++ +++ .+.++|+++++++++++++|+++ +|+++++|++.|+++
T Consensus 814 ~~~~~~~~~~~~t~~f~~~v~~q~~~~~~~r~~~~-~~~~~~~~~n~~~~~~~~~~~~l~~~~~~v~~~~~~f~~~~l~~ 892 (917)
T TIGR01116 814 DCYVFEGKQPARTISLSVLVVIEMFNALNALSEDQ-SLLRMPPWVNKWLIGAICLSMALHFLILYVPFLSRIFGVTPLSL 892 (917)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHcCCcc-cccccCCccCHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCCH
Confidence 13468999999999999999999999654 555 47789999999999999999754 899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccc
Q 043698 135 GQWAACIGIAAMSWPIGFLFKCIPV 159 (171)
Q Consensus 135 ~~w~~~~~~~~~~~~~~e~~K~i~r 159 (171)
.+|++++++++.++++.|++|+++|
T Consensus 893 ~~w~~~~~~~~~~~~~~e~~k~~~~ 917 (917)
T TIGR01116 893 TDWLMVLKLSLPVILVDEVLKFFSR 917 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999864
No 6
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=99.95 E-value=9.3e-27 Score=211.66 Aligned_cols=159 Identities=48% Similarity=0.843 Sum_probs=141.2
Q ss_pred CchhhhhhhcCCCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccc---CC------CccchhhH
Q 043698 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRSIF---GV------NESVKDTM 71 (171)
Q Consensus 1 tD~~palaL~~ep~~~~~M~r~PR~~~~~i~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~---~~------~~~~a~T~ 71 (171)
+|++|+++|+.|||++++|+||||+++++++++.++..++.+|+++++.++..|+++..++ +. ...+++|+
T Consensus 773 ~d~~~al~l~~e~~~~~lm~~~P~~~~~~li~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 852 (941)
T TIGR01517 773 MDTLAALALATEPPTEALLDRKPIGRNAPLISRSMWKNILGQAGYQLVVTFILLFAGGSIFDVSGPDEITSHQQGELNTI 852 (941)
T ss_pred HHHhhHHHHccCCccHHHHhCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCcccccccccchhhHH
Confidence 5899999999999999999999999999999999999999999999888887766543221 11 23578999
Q ss_pred HHHHHHHHHHHHHHHhhccCCccccccccccHHHHHHHHHHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHHHHHHHH
Q 043698 72 IFNTFVLCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMVEFLKKFADTERLNWGQWAACIGIAAMSWPIG 151 (171)
Q Consensus 72 ~F~~lv~~q~~~~~~~Rs~~~~~~~~~~~~N~~l~~~i~~~~~l~~~~vp~l~~~f~~~~l~~~~w~~~~~~~~~~~~~~ 151 (171)
+|++++++|++|.+++|+.++.+++.+.++|++++.++++++++|++++|+++.+|++.||++.+|++++++++..+++.
T Consensus 853 ~f~~~v~~~~~~~~~~r~~~~~~~~~~~~~n~~~~~~~~~~~~l~~~~~~~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~ 932 (941)
T TIGR01517 853 VFNTFVLLQLFNEINARKLYERNVFEGLFKNRIFVTIMGFTFGFQVIIVEFGGSFFSTVSLSIEQWIGCVLLGMLSLIFG 932 (941)
T ss_pred HHHHHHHHHHHHHHHHccCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999976546677888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccc
Q 043698 152 FLFKCIPV 159 (171)
Q Consensus 152 e~~K~i~r 159 (171)
|+.|.+++
T Consensus 933 ~~~~~~~~ 940 (941)
T TIGR01517 933 VLLRLIPV 940 (941)
T ss_pred HHHHhccC
Confidence 99999853
No 7
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=99.93 E-value=8.8e-27 Score=202.48 Aligned_cols=163 Identities=57% Similarity=0.984 Sum_probs=147.2
Q ss_pred CchhhhhhhcCCCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC------CccchhhHHHH
Q 043698 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRSIFGV------NESVKDTMIFN 74 (171)
Q Consensus 1 tD~~palaL~~ep~~~~~M~r~PR~~~~~i~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~------~~~~a~T~~F~ 74 (171)
||++.|+||+.|||.+++|+|||..++++++++.||++++.+++++....+...+.+...++. .+.+--|+.|+
T Consensus 843 MDTLgALALATepPt~~Lm~RkP~GR~~~LIt~tMwknil~qa~YQl~vl~iL~F~G~~if~~~~~~~~~~~~~nTiIFN 922 (1034)
T KOG0204|consen 843 MDTLGALALATEPPTDELMKRKPVGRTKPLITRTMWKNILGQAVYQLIVLFILNFAGKSIFGLNGPLHSPPSVHNTIIFN 922 (1034)
T ss_pred HHHHHHHHhccCCCChHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCCCCCchhhheeeehh
Confidence 699999999999999999999999999999999999999999999998888887766443321 12344599999
Q ss_pred HHHHHHHHHHHHhhccCCccccccccccHHHHHHHHHHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHHHHHHHHHHH
Q 043698 75 TFVLCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMVEFLKKFADTERLNWGQWAACIGIAAMSWPIGFLF 154 (171)
Q Consensus 75 ~lv~~q~~~~~~~Rs~~~~~~~~~~~~N~~l~~~i~~~~~l~~~~vp~l~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~ 154 (171)
++|++|+||-+|.|+.++.++|+++++|+.+...+...+++|++++.+++..|.++||++.+|++|+.++++.+++..+.
T Consensus 923 tFV~~qvFNEinaRki~~~NvFkgi~~N~~F~~ii~~T~v~QviIveF~g~~~st~~L~~~qWl~ci~~g~~sl~~g~~i 1002 (1034)
T KOG0204|consen 923 TFVFCQVFNEINARKIDERNVFKGIFRNRLFCVIITITVVSQVIIVEFGGAFFSTTPLSLTQWLWCIFIGVLSLPWGQLL 1002 (1034)
T ss_pred HHHHHHHHHHHhhcchhHHhHHHHHhcCceEEEEeeeeeehhhhhhhhcCcceeeecccHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCcc
Q 043698 155 KCIPVSGTQ 163 (171)
Q Consensus 155 K~i~r~~~~ 163 (171)
|.++.+..|
T Consensus 1003 k~iP~~~~~ 1011 (1034)
T KOG0204|consen 1003 KCIPVSSLP 1011 (1034)
T ss_pred eeccccccc
Confidence 999866544
No 8
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=99.93 E-value=1.7e-24 Score=197.78 Aligned_cols=161 Identities=16% Similarity=0.114 Sum_probs=131.8
Q ss_pred CchhhhhhhcCCCCCccccCCCCCCC-CCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHhhcc--------cCC-------
Q 043698 1 MDTLGALALATEQPTNDLMSKPPVGR-SEPLITKLMWRN-LIPQAIYQVTILLTLQFKGRSI--------FGV------- 63 (171)
Q Consensus 1 tD~~palaL~~ep~~~~~M~r~PR~~-~~~i~~~~~~~~-i~~~g~~~~~~~~~~~~~~~~~--------~~~------- 63 (171)
+|++|+++|++||+|+++|+||||++ +++++++.++.. ++..|++++++.+..|++.+.. ++.
T Consensus 788 ~d~lp~~al~~e~~~~~~m~~~P~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 867 (997)
T TIGR01106 788 TDMVPAISLAYEKAESDIMKRQPRNPKTDKLVNERLISMAYGQIGMIQALGGFFTYFVILAENGFLPLHLVGLRVQWDDR 867 (997)
T ss_pred HHHHHHHHHhcCCCCcccccCCCcCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccccccc
Confidence 68999999999999999999999996 689999987654 5566888887777766542210 000
Q ss_pred -------C------c-------cchhhHHHHHHHHHHHHHHHHhhccCCccccccccccHHHHHHHHHHHHHHHH--HHH
Q 043698 64 -------N------E-------SVKDTMIFNTFVLCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLI--MVE 121 (171)
Q Consensus 64 -------~------~-------~~a~T~~F~~lv~~q~~~~~~~Rs~~~~~~~~~~~~N~~l~~~i~~~~~l~~~--~vp 121 (171)
. . ..+||++|++++++|++|.++||+.+. ++|...++|++++.+++++++++++ ++|
T Consensus 868 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~~v~~q~~~~~~~R~~~~-~~f~~~~~n~~l~~~~~~~~~l~~~~~~~p 946 (997)
T TIGR01106 868 WINDLEDSYGQEWTYEQRKYVEFTCHTAFFVSIVVVQWADLIICKTRRN-SVFQQGMKNKILIFGLFEETALAAFLSYCP 946 (997)
T ss_pred cccccccccccccchhcccchhhhhhHHHHHHHHHHHHHHHHHhccCcc-cccccCCcCHHHHHHHHHHHHHHHHHHHhh
Confidence 0 0 157999999999999999999999644 5554338999999999999888764 589
Q ss_pred hhhhhcccccCChhHHHHHHHHHHHHHHHHHHHHhcccCCc
Q 043698 122 FLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSGT 162 (171)
Q Consensus 122 ~l~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~i~r~~~ 162 (171)
+++.+|++.|+++.+|.++++++++.+++.|++|++.|+++
T Consensus 947 ~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~~~~k~~~r~~~ 987 (997)
T TIGR01106 947 GMGVALRMYPLKPTWWFCAFPYSLLIFVYDEIRKLIIRRNP 987 (997)
T ss_pred hhHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999987653
No 9
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=99.90 E-value=6.2e-25 Score=190.86 Aligned_cols=164 Identities=16% Similarity=0.182 Sum_probs=141.7
Q ss_pred CchhhhhhhcCCCCCccccCCCCCC-CCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHhhcc------------------
Q 043698 1 MDTLGALALATEQPTNDLMSKPPVG-RSEPLITKLMWR-NLIPQAIYQVTILLTLQFKGRSI------------------ 60 (171)
Q Consensus 1 tD~~palaL~~ep~~~~~M~r~PR~-~~~~i~~~~~~~-~i~~~g~~~~~~~~~~~~~~~~~------------------ 60 (171)
||..||+.|++|+||.|+|+|+||+ ++++++|++++. .++..|++++++++..|+..+..
T Consensus 810 TDmvPAiSLAYE~aEsDIM~r~PR~p~~D~LVN~rLi~~aY~qIG~iqa~agF~tYFvima~nGf~P~~L~~ir~~W~d~ 889 (1019)
T KOG0203|consen 810 TDIVPAISLAYEKAESDIMLRPPRNPKDDKLVNKRLISYSYLQIGMIQALAGFFTYFVIMAENGFLPRTLVGLREDWDDD 889 (1019)
T ss_pred cccchhhhHhccCchhhHHhcCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHhhHHhhhhh
Confidence 7999999999999999999999999 679999998754 46778999999999999864321
Q ss_pred --------cCCC---------ccchhhHHHHHHHHHHHHHHHHhhccCCccccccccccHHHHHHHHHHHHHHH--HHHH
Q 043698 61 --------FGVN---------ESVKDTMIFNTFVLCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQL--IMVE 121 (171)
Q Consensus 61 --------~~~~---------~~~a~T~~F~~lv~~q~~~~~~~Rs~~~~~~~~~~~~N~~l~~~i~~~~~l~~--~~vp 121 (171)
+|.. ..+++|+.|+++|+.|+++.+.|++ ++.++|.+-++|+.++.+++..+++.. .|+|
T Consensus 890 ~~~Dl~DsyGQeWtyeqRk~le~tc~taFfvsIvV~Q~adLii~KT-RRnSlfqqGmrN~vl~f~v~~e~~La~fl~y~p 968 (1019)
T KOG0203|consen 890 GVNDLTDSYGQEWTYEQRKYLEYTCYTAFFISIVVVQWADLIICKT-RRNSIFQQGMRNKVLIFAVIFETCLACFLCYCP 968 (1019)
T ss_pred hhhhhhhhccccccHHHHHHHHHhhhhheeeeehHHhHhhHHhhhc-chhHHHHhhhhhhhHHHHHHHHHHHHHHHhcCc
Confidence 1211 3457899999999999999999999 567888655899999999999888765 4689
Q ss_pred hhhhhcccccCChhHHHHHHHHHHHHHHHHHHHHhcccCCcchh
Q 043698 122 FLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSGTQLL 165 (171)
Q Consensus 122 ~l~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~i~r~~~~~~ 165 (171)
++...|++.|+.+..|...+++++..++++|++|++.|+++..-
T Consensus 969 g~~~~l~~~pl~~~~wl~a~P~~ilIfvydE~Rk~~IR~~P~gw 1012 (1019)
T KOG0203|consen 969 GVLYALGMYPLKFQWWLVAFPFGILIFVYDEVRKLFIRRYPGGW 1012 (1019)
T ss_pred cHHHHhccCCCCcEEEEecccceeeeeeHHHHHhHhhhhCCCch
Confidence 99999999999999999999999999999999999999987643
No 10
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=99.86 E-value=4.7e-21 Score=173.59 Aligned_cols=152 Identities=14% Similarity=0.112 Sum_probs=116.0
Q ss_pred CchhhhhhhcCCCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc--cchhhHHHHHHHH
Q 043698 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRSIFGVNE--SVKDTMIFNTFVL 78 (171)
Q Consensus 1 tD~~palaL~~ep~~~~~M~r~PR~~~~~i~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~--~~a~T~~F~~lv~ 78 (171)
||. |+++|++||+|+|+| ||||+++++++++.++. +...+.+++++++..+++.+. .+... ...+|+.|.++++
T Consensus 741 ~D~-~~lal~~d~~~~~~m-~~P~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~f~~l~~ 816 (903)
T PRK15122 741 YDI-SQLSLPWDKMDKEFL-RKPRKWDAKNIGRFMLW-IGPTSSIFDITTFALMWFVFA-ANSVEMQALFQSGWFIEGLL 816 (903)
T ss_pred HHH-HHHhhcCCCCCHhhc-CCCCCCChhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhc-cCcHhhhhhhHHHHHHHHHH
Confidence 585 999999999999999 99999999999997664 333333444444443332221 12111 1235889999999
Q ss_pred HHHHHHHHhhccCCccccccccccHHHHHHHHHHHHHHHH--HHHh--hhhhcccccCChhHHHHHHHHHHHHHHHHHHH
Q 043698 79 CQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLI--MVEF--LKKFADTERLNWGQWAACIGIAAMSWPIGFLF 154 (171)
Q Consensus 79 ~q~~~~~~~Rs~~~~~~~~~~~~N~~l~~~i~~~~~l~~~--~vp~--l~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~ 154 (171)
+|++|++++|+.+. ++++|++.+.+++++++++++ ++|+ ++.+|++.|+++.+|.++++.++.++++.|+.
T Consensus 817 ~q~~~~~~~R~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~e~~ 891 (903)
T PRK15122 817 SQTLVVHMLRTQKI-----PFIQSTAALPVLLTTGLIMAIGIYIPFSPLGAMVGLEPLPWSYFPWLAATLLGYCLVAQGM 891 (903)
T ss_pred HHHHHHHhhCcCCC-----CcCcchHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999643 345788888888888888864 4786 99999999999999999999999999999999
Q ss_pred HhcccCC
Q 043698 155 KCIPVSG 161 (171)
Q Consensus 155 K~i~r~~ 161 (171)
|.+-.|+
T Consensus 892 k~~~~r~ 898 (903)
T PRK15122 892 KRFYIRR 898 (903)
T ss_pred HHHHhhh
Confidence 8554443
No 11
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=99.77 E-value=4.9e-18 Score=153.66 Aligned_cols=149 Identities=13% Similarity=0.129 Sum_probs=106.0
Q ss_pred CchhhhhhhcCCCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-C-C--ccchhhHHHHHH
Q 043698 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRSIFG-V-N--ESVKDTMIFNTF 76 (171)
Q Consensus 1 tD~~palaL~~ep~~~~~M~r~PR~~~~~i~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~-~-~--~~~a~T~~F~~l 76 (171)
|| +|+++|++||+++++|++||| ++++.+. ..++..|.+.++..+..|...+..++ . . ...-+|..|.++
T Consensus 706 ~d-~~~~al~~~~~~~~~m~~p~~-~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~~ 779 (867)
T TIGR01524 706 YD-FSQLTLPWDKMDREFLKKPHQ-WEQKGMG----RFMLCIGPVSSIFDIATFLLMWFVFSANTVEEQALFQSGWFVVG 779 (867)
T ss_pred HH-HHHHhhcCCCCChHhhCCCCC-CChhhHH----HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHH
Confidence 58 799999999999999987666 7775433 34555566555444444332111111 1 1 112378999999
Q ss_pred HHHHHHHHHHhhccCCccccccccccHHHHHHHHHHHHHHHH--HHHh--hhhhcccccC--ChhHHHHHHHHHHHHHHH
Q 043698 77 VLCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLI--MVEF--LKKFADTERL--NWGQWAACIGIAAMSWPI 150 (171)
Q Consensus 77 v~~q~~~~~~~Rs~~~~~~~~~~~~N~~l~~~i~~~~~l~~~--~vp~--l~~~f~~~~l--~~~~w~~~~~~~~~~~~~ 150 (171)
+++|++|++++|+.+. ++|+|++++.+++++++++++ ++|+ ++.+|++.|+ ++.+|++++.++.. ++
T Consensus 780 ~~~~~~~~~~~R~~~~-----~~~~n~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~~~l~~~~~~~~~~~~~~~~--~~ 852 (867)
T TIGR01524 780 LLSQTLVVHMIRTEKI-----PFIQSRAAAPVMIATLLVMALGIIIPFSPLGHSIGLVSLPLSYFPWLIAILVGYM--AT 852 (867)
T ss_pred HHHHHHHHHhhCcCCC-----CcCcchHHHHHHHHHHHHHHHHHHhchhhhhhhhccccCCccHHHHHHHHHHHHH--HH
Confidence 9999999999999643 346899999999999998864 4676 5999999988 55678777776665 66
Q ss_pred HHHHHhcccCCc
Q 043698 151 GFLFKCIPVSGT 162 (171)
Q Consensus 151 ~e~~K~i~r~~~ 162 (171)
.|+.|.+-.|+.
T Consensus 853 ~e~~k~~~~~~~ 864 (867)
T TIGR01524 853 MQLVKTFYIRRF 864 (867)
T ss_pred HHHHHHHHHHhc
Confidence 899887765543
No 12
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=99.77 E-value=3.9e-18 Score=154.67 Aligned_cols=147 Identities=13% Similarity=0.121 Sum_probs=107.0
Q ss_pred CchhhhhhhcCCCCCccccCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccc----hhhHHHHH
Q 043698 1 MDTLGALALATEQPTNDLMSKPPV-GRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRSIFGVNESV----KDTMIFNT 75 (171)
Q Consensus 1 tD~~palaL~~ep~~~~~M~r~PR-~~~~~i~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~----a~T~~F~~ 75 (171)
|| +|++||++||+|+++|+|||| ++++ +...++..|.+.+...++.|...+..++....+ .+|..|.+
T Consensus 741 ~D-~~~~al~~d~~~~~~m~~p~r~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~ 813 (902)
T PRK10517 741 YD-VSQVAIPFDNVDDEQIQKPQRWNPAD------LGRFMVFFGPISSIFDILTFCLMWWVFHANTPETQTLFQSGWFVV 813 (902)
T ss_pred HH-HhHHhhcCCCCChhhhcCCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccccchhhHhHHHHHHHHH
Confidence 58 689999999999999999999 3322 344456666666655555544322111211122 34455999
Q ss_pred HHHHHHHHHHHhhccCCccccccccccHHHHHHHHHHHHHHHH--HHH--hhhhhcccccCC--hhHHHHHHHHHHHHHH
Q 043698 76 FVLCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLI--MVE--FLKKFADTERLN--WGQWAACIGIAAMSWP 149 (171)
Q Consensus 76 lv~~q~~~~~~~Rs~~~~~~~~~~~~N~~l~~~i~~~~~l~~~--~vp--~l~~~f~~~~l~--~~~w~~~~~~~~~~~~ 149 (171)
++++|+++.++||+.+. ++++|++++.+++.+++++++ ++| +++.+|++.|++ ..+|.+++.++.. +
T Consensus 814 ~~~~q~~~~~~~R~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~ 886 (902)
T PRK10517 814 GLLSQTLIVHMIRTRRI-----PFIQSRAAWPLMIMTLIVMAVGIALPFSPLASYLQLQALPLSYFPWLVAILAGYM--T 886 (902)
T ss_pred HHHHHHHHHHhhccCCC-----CcccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhCCcCCChhHHHHHHHHHHHHH--H
Confidence 99999999999999543 356899999999999888764 467 899999999999 6788888777666 5
Q ss_pred HHHHHHhcccCC
Q 043698 150 IGFLFKCIPVSG 161 (171)
Q Consensus 150 ~~e~~K~i~r~~ 161 (171)
+.|+.|.+..|+
T Consensus 887 ~~e~~K~~~~~~ 898 (902)
T PRK10517 887 LTQLVKGFYSRR 898 (902)
T ss_pred HHHHHHHHHHHh
Confidence 688888765444
No 13
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.74 E-value=6.5e-17 Score=147.00 Aligned_cols=155 Identities=23% Similarity=0.376 Sum_probs=125.4
Q ss_pred CchhhhhhhcCCCCCccccCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHhhcccCC-----C--ccchhhHH
Q 043698 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRN-LIPQAIYQVTILLTLQFKGRSIFGV-----N--ESVKDTMI 72 (171)
Q Consensus 1 tD~~palaL~~ep~~~~~M~r~PR~~~~~i~~~~~~~~-i~~~g~~~~~~~~~~~~~~~~~~~~-----~--~~~a~T~~ 72 (171)
+|++|+++||.||++.+.|++|||+|++++++++.+.+ ++..|...+.+.+..|.+.+..... + ...++|++
T Consensus 744 ~d~~pa~~L~~~~~~~~~m~~~~~~p~~~i~~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 823 (917)
T COG0474 744 TDSLPALALGVEDPESDVMKRPPRGPEEGLFNRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTA 823 (917)
T ss_pred HhhhhhheeecCCCcccccccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHH
Confidence 58999999999999999999999999999999988776 7777877777777776654321111 1 45689999
Q ss_pred HHHHHHHHHHHHHHhhccCCcccc-ccccccHHHHHHHHHHHHHHHHH--HHhhh-hhcccccCChhHHHHHHHHHH--H
Q 043698 73 FNTFVLCQIFNEFNARKLEKKNIF-KGIHKNKLFLAIIGITIVLQLIM--VEFLK-KFADTERLNWGQWAACIGIAA--M 146 (171)
Q Consensus 73 F~~lv~~q~~~~~~~Rs~~~~~~~-~~~~~N~~l~~~i~~~~~l~~~~--vp~l~-~~f~~~~l~~~~w~~~~~~~~--~ 146 (171)
|..++++|.++.+++|+... +++ ..++.|++++++++++++++++. +|.++ ..|++.|++..+|..+...+. .
T Consensus 824 f~~~~~~~~~~~~~~~~~~~-~~~~~~~~~n~~~~~~~~~~~~l~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 902 (917)
T COG0474 824 FTVLVLIQLLLTLAVRSRGR-PFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPTPLSLFEWLIAIAVALLLL 902 (917)
T ss_pred HHHHHHHHHHHHHHHhcccc-chhhcccccCHHHHHHHHHHHHHHHHHHHhHHhHhhhccCCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999654 555 46789999999999999988754 68888 799999999999999988874 4
Q ss_pred HHHHHHHHHh
Q 043698 147 SWPIGFLFKC 156 (171)
Q Consensus 147 ~~~~~e~~K~ 156 (171)
.+...|..|.
T Consensus 903 ~~~~~~~~~~ 912 (917)
T COG0474 903 YIVVSELYKL 912 (917)
T ss_pred HHHHHHHHHH
Confidence 4444555555
No 14
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=99.34 E-value=8e-12 Score=115.62 Aligned_cols=134 Identities=16% Similarity=0.184 Sum_probs=104.8
Q ss_pred CchhhhhhhcCCCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc--cc----C--CC----ccch
Q 043698 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRS--IF----G--VN----ESVK 68 (171)
Q Consensus 1 tD~~palaL~~ep~~~~~M~r~PR~~~~~i~~~~~~~~i~~~g~~~~~~~~~~~~~~~~--~~----~--~~----~~~a 68 (171)
+|++++++++.|||++++|++|| .++++++.++..++.++++..++.+..|.+... ++ . .+ ....
T Consensus 901 ~~~~~~l~l~~~~p~~~l~~~~P---~~~l~~~~~~~si~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 977 (1054)
T TIGR01657 901 LIFPVALLMSRNKPLKKLSKERP---PSNLFSVYILTSVLIQFVLHILSQVYLVFELHAQPWYKPENPVDLEKENFPNLL 977 (1054)
T ss_pred HHHHHHHHHHcCCchhhcCCCCC---CccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCCcccccCccHH
Confidence 47899999999999999999998 479999999999999999999888888765432 11 1 00 1223
Q ss_pred hhHHHHHHHHHHHHHHHHhhccCCccccccccccHHHHHHHHHHHHHHHH----HHHhhhhhcccccCChhHHHHH
Q 043698 69 DTMIFNTFVLCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLI----MVEFLKKFADTERLNWGQWAAC 140 (171)
Q Consensus 69 ~T~~F~~lv~~q~~~~~~~Rs~~~~~~~~~~~~N~~l~~~i~~~~~l~~~----~vp~l~~~f~~~~l~~~~w~~~ 140 (171)
+|++| .++..|.++.+.+++. ++++..++++|+++++++++++++++. ++|+++.+|+++|++. +|-..
T Consensus 978 ~T~~f-~~~~~~~~~~~~~~~~-g~pf~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~ 1050 (1054)
T TIGR01657 978 NTVLF-FVSSFQYLITAIVNSK-GPPFREPIYKNKPFVYLLITGLGLLLVLLLDPHPLLGKILQIVPLPQ-EFRSK 1050 (1054)
T ss_pred HHHHH-HHHHHHHHHheEEEcC-CcchhhhHHHhHHHHHHHHHHHHHHHHhhhCCCHHHHhhheeeeCCH-HHHHH
Confidence 59999 5666677777888885 456667889999999999888777652 3699999999999985 55443
No 15
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=98.79 E-value=5.6e-08 Score=87.57 Aligned_cols=108 Identities=13% Similarity=0.071 Sum_probs=78.5
Q ss_pred CchhhhhhhcCCCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc------ccC--CCccchhhHH
Q 043698 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRS------IFG--VNESVKDTMI 72 (171)
Q Consensus 1 tD~~palaL~~ep~~~~~M~r~PR~~~~~i~~~~~~~~i~~~g~~~~~~~~~~~~~~~~------~~~--~~~~~a~T~~ 72 (171)
+|. +++++++|++++ ||+|++..++ .++..++..|.+.++.+++.|++.+. ..+ .+..++||++
T Consensus 637 ~d~-~~~~l~~~~~~~------~~~p~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 708 (755)
T TIGR01647 637 NDG-TIMTIAYDNVKP------SKLPQRWNLR-EVFTMSTVLGIYLVISTFLLLAIALDTSFFIDKFGLQLLHGNLQSLI 708 (755)
T ss_pred HhH-hHhhccCCCCCC------CCCCCccchH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhcccccccHhhhHHHH
Confidence 365 699999999875 4555555554 66677888899998888888765442 011 1245789999
Q ss_pred HHHHHHHHHHHHHHhhccCCccccccccccHHHHHHHHHHHHHHHHH
Q 043698 73 FNTFVLCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIM 119 (171)
Q Consensus 73 F~~lv~~q~~~~~~~Rs~~~~~~~~~~~~N~~l~~~i~~~~~l~~~~ 119 (171)
|..++++|.++.+++|+.+ .++. .+.|+++..+..+..++..++
T Consensus 709 f~~~~~~~~~~~~~~r~~~-~~~~--~~p~~~l~~~~~~~~~~~~~~ 752 (755)
T TIGR01647 709 YLQVSISGQATIFVTRTHG-FFWS--ERPGKLLFIAFVIAQIIATFI 752 (755)
T ss_pred HHHHHHHHHHHHheeccCC-CCcc--cCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999953 3443 257889888888777766543
No 16
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=97.80 E-value=0.00036 Score=65.40 Aligned_cols=53 Identities=15% Similarity=0.302 Sum_probs=42.8
Q ss_pred CchhhhhhhcC--CCCCccccCCCCC----CCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 043698 1 MDTLGALALAT--EQPTNDLMSKPPV----GRSEPLITKLMWRNLIPQAIYQVTILLTL 53 (171)
Q Consensus 1 tD~~palaL~~--ep~~~~~M~r~PR----~~~~~i~~~~~~~~i~~~g~~~~~~~~~~ 53 (171)
+|++|++++|. +++++++|+++|+ .++++.++.+.+...+..|++.+++++..
T Consensus 875 ~t~lp~~~l~~~d~~~~~~~l~~~P~ly~~~~~~~~~~~~~f~~~~~~~~~~~~ii~~~ 933 (1057)
T TIGR01652 875 FTALPVISLGVFDQDVSASLSLRYPQLYREGQKGQGFSTKTFWGWMLDGIYQSLVIFFF 933 (1057)
T ss_pred HHhHHHHHHHHhcccCCHHHHHhChHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999986 5678999999998 67889999987777777888887776544
No 17
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=90.59 E-value=9.1 Score=35.64 Aligned_cols=68 Identities=9% Similarity=0.001 Sum_probs=46.4
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHH----HHhhhhhcccccCChhH---HHHHHHH-HHHHHHHHHHHHhcccC
Q 043698 93 KNIFKGIHKNKLFLAIIGITIVLQLIM----VEFLKKFADTERLNWGQ---WAACIGI-AAMSWPIGFLFKCIPVS 160 (171)
Q Consensus 93 ~~~~~~~~~N~~l~~~i~~~~~l~~~~----vp~l~~~f~~~~l~~~~---w~~~~~~-~~~~~~~~e~~K~i~r~ 160 (171)
.+|...++.||.++++++++.++.+.. -|-+|.-|+.++++-.- ...++.+ -++.+.++++.|++-..
T Consensus 1075 ~PF~Esl~eNK~l~y~ll~~~~~~~~l~tg~~peLn~~~~lV~mp~~fk~~ll~~l~lD~v~c~~~er~~~f~f~~ 1150 (1160)
T KOG0209|consen 1075 RPFRESLRENKGLLYGLLGSAGVIIALATGSSPELNEKFELVDMPQDFKIKLLAVLVLDFVLCYLVERVLKFFFGD 1150 (1160)
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHHHhccChhHHhheeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 366678899999999998888776543 48999999999997432 2222222 33445566677776543
No 18
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=84.41 E-value=8.7 Score=35.12 Aligned_cols=92 Identities=12% Similarity=0.129 Sum_probs=56.6
Q ss_pred cchhhHHHHHHHHHHHHHH-HHhhccCCccccccccccHHHHHHHHHHHHHHHHHHHhhhhhcccccCChhHHHHH-HHH
Q 043698 66 SVKDTMIFNTFVLCQIFNE-FNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMVEFLKKFADTERLNWGQWAAC-IGI 143 (171)
Q Consensus 66 ~~a~T~~F~~lv~~q~~~~-~~~Rs~~~~~~~~~~~~N~~l~~~i~~~~~l~~~~vp~l~~~f~~~~l~~~~w~~~-~~~ 143 (171)
.+--++.|.++++.++... +..++. ++.+..+-++++++-++.+|.++++|...-+......+- .+.
T Consensus 955 ~~ivaisFtaLi~tELiMVaLtv~tw-----------~~~m~vae~lsL~~Yivsl~~l~~yfd~~f~~~~~Fl~k~t~I 1023 (1051)
T KOG0210|consen 955 IHIVAISFTALILTELIMVALTVRTW-----------HWLMVVAELLSLALYIVSLAFLHEYFDRYFILTYVFLWKVTVI 1023 (1051)
T ss_pred eEeeeeeeHHHHHHHHHHHhhhhhhh-----------hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3455888999999886543 333331 455666667777777777899999887655444332222 223
Q ss_pred HHHHHHHHHHHHhcccCCcchhhhh
Q 043698 144 AAMSWPIGFLFKCIPVSGTQLLFKQ 168 (171)
Q Consensus 144 ~~~~~~~~e~~K~i~r~~~~~~~~~ 168 (171)
..+.++.....|.++|+-.|--.++
T Consensus 1024 ~~vS~Lpl~~~K~lrrk~sPpSYaK 1048 (1051)
T KOG0210|consen 1024 TLVSCLPLYFIKALRRKLSPPSYAK 1048 (1051)
T ss_pred HHHHHHHHHHHHHHHhhcCCcchhh
Confidence 3333444456799998876654443
No 19
>PLN03190 aminophospholipid translocase; Provisional
Probab=71.17 E-value=73 Score=31.06 Aligned_cols=49 Identities=10% Similarity=0.304 Sum_probs=26.3
Q ss_pred hhhhhh-cCCC--CCccccCCCCC----CCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 043698 4 LGALAL-ATEQ--PTNDLMSKPPV----GRSEPLITKLMWRNLIPQAIYQVTILLTL 53 (171)
Q Consensus 4 ~palaL-~~ep--~~~~~M~r~PR----~~~~~i~~~~~~~~i~~~g~~~~~~~~~~ 53 (171)
+|-+++ .+|. +++.+++. |. .++...++.+.....+..|++.++++++.
T Consensus 981 lPii~~~ifD~dv~~~~l~~~-P~LY~~~~~~~~~n~~~F~~w~~~~i~qs~iiff~ 1036 (1178)
T PLN03190 981 LPTIVVGILDKDLSRRTLLKY-PQLYGAGQRQEAYNSKLFWLTMIDTLWQSAVVFFV 1036 (1178)
T ss_pred HHHHHHHHhcccCCHHHHHhC-cHhhhhhccCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 455555 3443 33333433 42 23456788776655666667766655543
No 20
>PRK05470 fumarate reductase subunit D; Provisional
Probab=59.44 E-value=21 Score=24.89 Aligned_cols=28 Identities=21% Similarity=0.522 Sum_probs=18.3
Q ss_pred cCCCCCCCCCCCC-----CHHHHHHHHHHHHHH
Q 043698 19 MSKPPVGRSEPLI-----TKLMWRNLIPQAIYQ 46 (171)
Q Consensus 19 M~r~PR~~~~~i~-----~~~~~~~i~~~g~~~ 46 (171)
|++.|++.|||++ ...++..++.-.++.
T Consensus 1 ~~~~pkRS~EPi~WgLFgAGGm~sAl~~PvlIL 33 (118)
T PRK05470 1 INQNPKRSDEPVFWGLFGAGGMWSAIIAPVLIL 33 (118)
T ss_pred CCCCCCCCCCCCeeeeeccchhHHHHHHHHHHH
Confidence 5788999999987 335665555443333
No 21
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=59.27 E-value=40 Score=22.91 Aligned_cols=42 Identities=12% Similarity=0.029 Sum_probs=25.7
Q ss_pred CCCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 043698 13 QPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQF 55 (171)
Q Consensus 13 p~~~~~M~r~PR~~~~~i~~~~~~~~i~~~g~~~~~~~~~~~~ 55 (171)
+|+..++.++|..+. +--++..+-.+.+.|+..+++.+.++.
T Consensus 37 ~p~g~l~~~~p~~~G-~~~d~e~we~~~f~~~~~~~v~~~~~~ 78 (105)
T PF10183_consen 37 PPNGWLFGKNPPSPG-EKRDWEGWELPFFFGFSGSLVFGGVFL 78 (105)
T ss_pred CCCccccCCCCCcCC-CcchHhhhHHHHHHHHHHHHHHHHHHH
Confidence 555568888887655 344566666666666655555444443
No 22
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=48.71 E-value=73 Score=30.45 Aligned_cols=126 Identities=18% Similarity=0.224 Sum_probs=64.3
Q ss_pred hhhhhhcCCCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh--cccC-----CC---ccchhhHHH
Q 043698 4 LGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGR--SIFG-----VN---ESVKDTMIF 73 (171)
Q Consensus 4 ~palaL~~ep~~~~~M~r~PR~~~~~i~~~~~~~~i~~~g~~~~~~~~~~~~~~~--~~~~-----~~---~~~a~T~~F 73 (171)
+-|+.++.-+|...+-..| |+..+++++...-.+++-+++.+.-+..++... .|+. .+ ...--|..|
T Consensus 955 pia~~m~~~~a~~~L~~~r---P~~~L~s~~~~~~l~~q~vli~l~q~i~~l~~~~qpw~~pp~~~~~~nt~s~~~T~lF 1031 (1140)
T KOG0208|consen 955 PIAVMMSRFDASDKLFPKR---PPTNLLSKKILVPLLLQIVLICLVQWILTLIVEPQPWYEPPNPQVDDNTQSSDNTSLF 1031 (1140)
T ss_pred HHHHHHccCcHHHHhcCCC---CCccccccchhhhhHHHHHHHHHHHHhhheeeccccceecCCCCcCcccccceeeEee
Confidence 3456666666665554433 366888988777666666655555444444321 1111 00 111124445
Q ss_pred HHHHHHHHHHHHHhhccCCccccccccccHHHHHHHHHHHHHHH--HHHHh---hhhhcccccCCh
Q 043698 74 NTFVLCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQL--IMVEF---LKKFADTERLNW 134 (171)
Q Consensus 74 ~~lv~~q~~~~~~~Rs~~~~~~~~~~~~N~~l~~~i~~~~~l~~--~~vp~---l~~~f~~~~l~~ 134 (171)
..=.+--+++++.... ++++...+++|+-+...+....+..+ ..++. ....++..+.+-
T Consensus 1032 ~vS~fqYi~~a~v~S~--g~pfr~pl~~n~~f~~~i~~i~~~~i~l~~~~~~~~~~~l~~~t~~~~ 1095 (1140)
T KOG0208|consen 1032 FVSSFQYIFIALVLSK--GSPFRRPLWKNVLFKVFITVIILSTIYLLFVNYLFIEWKLLQLTYIPT 1095 (1140)
T ss_pred ehhHHHHHHhheeecc--CCcccCchhcCceeeeehhhHHhhhhhhhhccccchhhhhhceeccCc
Confidence 5444444555555443 34556678888765544433333322 22221 125677777765
No 23
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=42.91 E-value=2.5e+02 Score=25.28 Aligned_cols=99 Identities=15% Similarity=0.108 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCC---CccchhhHHHHHHH--HHHHHHHHHhhccCCcccc-cccccc-HHHHH
Q 043698 35 MWRNLIPQAIYQVTILLTLQFKGRSIFGV---NESVKDTMIFNTFV--LCQIFNEFNARKLEKKNIF-KGIHKN-KLFLA 107 (171)
Q Consensus 35 ~~~~i~~~g~~~~~~~~~~~~~~~~~~~~---~~~~a~T~~F~~lv--~~q~~~~~~~Rs~~~~~~~-~~~~~N-~~l~~ 107 (171)
.+.++=..|.++....+..+..++++.|. +...++..+-..+. +.-.|-.+......+.+++ ..+++| +.+..
T Consensus 235 ~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~ 314 (599)
T PF06609_consen 235 QLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAA 314 (599)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHH
Confidence 34444445666666666667667665342 23445655443332 2223333333322234555 367776 44333
Q ss_pred HHHHHHHHHHH------HHH-hhhhhcccccCC
Q 043698 108 IIGITIVLQLI------MVE-FLKKFADTERLN 133 (171)
Q Consensus 108 ~i~~~~~l~~~------~vp-~l~~~f~~~~l~ 133 (171)
...++++.... +-| ....+|++.+.+
T Consensus 315 ~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~ 347 (599)
T PF06609_consen 315 LLVISFISGMNFFSVNILWPQQVVNVFGSDPIS 347 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcc
Confidence 33333332211 124 334567666643
No 24
>PF11804 DUF3325: Protein of unknown function (DUF3325); InterPro: IPR021762 This family of short proteins are functionally uncharacterised. This family is restricted to Alpha-, Beta- and Gamma-proteobacteria.
Probab=41.59 E-value=1.1e+02 Score=20.80 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.4
Q ss_pred hhhhhhhcCCCCCccccCCCCCCC
Q 043698 3 TLGALALATEQPTNDLMSKPPVGR 26 (171)
Q Consensus 3 ~~palaL~~ep~~~~~M~r~PR~~ 26 (171)
++.++|++.|+..+|+.+|+|.++
T Consensus 11 gf~~LALam~rH~~~v~~~~~~~~ 34 (106)
T PF11804_consen 11 GFAALALAMDRHHRQVFGRPLSPA 34 (106)
T ss_pred HHHHHHhcCcHHHHHHcCCCCCHH
Confidence 467899999999999998888653
No 25
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=34.66 E-value=2e+02 Score=21.72 Aligned_cols=27 Identities=11% Similarity=0.268 Sum_probs=12.5
Q ss_pred ccccCCCCCCCCCCCCCHHHHHHHHHHH
Q 043698 16 NDLMSKPPVGRSEPLITKLMWRNLIPQA 43 (171)
Q Consensus 16 ~~~M~r~PR~~~~~i~~~~~~~~i~~~g 43 (171)
+++.+.+|++++... +...+..++.++
T Consensus 60 ~eli~~~~k~~~~~~-~~~~~~~~ld~~ 86 (206)
T PF06570_consen 60 DELIKPLPKPKKKNK-NSNPWLMALDNS 86 (206)
T ss_pred HHHhccccCCccccc-ccchHHHHHHHH
Confidence 445556666655444 333333344333
No 26
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=33.30 E-value=1.3e+02 Score=24.20 Aligned_cols=22 Identities=9% Similarity=0.273 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhhhhhccccc
Q 043698 110 GITIVLQLIMVEFLKKFADTER 131 (171)
Q Consensus 110 ~~~~~l~~~~vp~l~~~f~~~~ 131 (171)
+.|+++.++++|..+-.+...+
T Consensus 60 ~ls~glSi~~~~~~g~~l~~~~ 81 (287)
T PF07760_consen 60 ALSVGLSIAIVPLIGLLLNYTP 81 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 5556666666665555555444
No 27
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=30.53 E-value=1.9e+02 Score=23.17 Aligned_cols=24 Identities=4% Similarity=-0.241 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccC
Q 043698 137 WAACIGIAAMSWPIGFLFKCIPVS 160 (171)
Q Consensus 137 w~~~~~~~~~~~~~~e~~K~i~r~ 160 (171)
|++.+.+++..++..-+.-+++||
T Consensus 292 ~gy~~~l~~m~~i~~~~~~~fkrk 315 (318)
T TIGR00383 292 YGYPAVLIVMAVIALGPLIYFRRK 315 (318)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455444444444333344455544
No 28
>PF02313 Fumarate_red_D: Fumarate reductase subunit D; InterPro: IPR003418 Fumarate reductase is a membrane-bound flavoenzyme consisting of four subunits, A-B. A and B comprise the membrane-extrinsic catalytic domain and C and D link the catalytic centres to the electron-transport chain. This family consists of the 13kDa hydrophobic subunit D. This component may be required to anchor the catalytic components of the fumarate reductase complex to the cytoplasmic membrane.; GO: 0006106 fumarate metabolic process, 0016020 membrane; PDB: 3P4R_P 1KF6_P 3P4Q_P 3P4S_D 3CIR_P 2B76_D 1L0V_P 3P4P_D 1KFY_P.
Probab=27.51 E-value=14 Score=25.81 Aligned_cols=12 Identities=33% Similarity=0.695 Sum_probs=5.1
Q ss_pred cCCCCCCCCCCC
Q 043698 19 MSKPPVGRSEPL 30 (171)
Q Consensus 19 M~r~PR~~~~~i 30 (171)
|++.|++.+||+
T Consensus 1 ~~~~~kRS~EPi 12 (118)
T PF02313_consen 1 MNQNPKRSDEPI 12 (118)
T ss_dssp --SS--B-SHHH
T ss_pred CCCCCcccCCCc
Confidence 788888888854
No 29
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=24.57 E-value=2.3e+02 Score=19.16 Aligned_cols=35 Identities=9% Similarity=0.134 Sum_probs=18.2
Q ss_pred hhhhhcccccCChhHHHHHHHHHHHHHHHHHHHHhcccC
Q 043698 122 FLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVS 160 (171)
Q Consensus 122 ~l~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~i~r~ 160 (171)
++.+.|++.| .|...+.+.-+...+.-+++++.|.
T Consensus 65 WLD~~~~t~~----~~tl~~lllGv~~G~~n~w~wi~re 99 (100)
T TIGR02230 65 WLDRHYPSPF----SWTLTMLIVGVVIGCLNAWHWVSRE 99 (100)
T ss_pred HHHhhcCCCc----HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6777787765 3444433333333333446666654
No 30
>PF08510 PIG-P: PIG-P; InterPro: IPR013717 PIG-P (phosphatidylinositol N-acetylglucosaminyltransferase subunit P) is an enzyme involved in GPI anchor biosynthesis [].
Probab=24.46 E-value=2.4e+02 Score=19.63 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=17.9
Q ss_pred HHHH--hhhhhcccccCChhHHHHHHHHHHH
Q 043698 118 IMVE--FLKKFADTERLNWGQWAACIGIAAM 146 (171)
Q Consensus 118 ~~vp--~l~~~f~~~~l~~~~w~~~~~~~~~ 146 (171)
.++| .+++ ++..-.+-+.|+..+..-++
T Consensus 25 a~lP~~~L~~-lgity~P~kyWAlaiP~~~l 54 (126)
T PF08510_consen 25 AFLPDEWLHS-LGITYYPDKYWALAIPSWLL 54 (126)
T ss_pred HhcCHHHHHh-cCccccCcchHHHHHHHHHH
Confidence 3454 5666 67777777888777654333
No 31
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=22.28 E-value=1.2e+02 Score=24.84 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=19.7
Q ss_pred hhhhhcccccCChhHHHHHHHHHHHHHHHH
Q 043698 122 FLKKFADTERLNWGQWAACIGIAAMSWPIG 151 (171)
Q Consensus 122 ~l~~~f~~~~l~~~~w~~~~~~~~~~~~~~ 151 (171)
.++.+++..|.+..|+.+++.+..+.....
T Consensus 13 ~l~~~~g~~PFSvgdi~~~~~il~ll~~~~ 42 (318)
T PF12725_consen 13 LLRRLFGWFPFSVGDILYYLLILFLLYYLI 42 (318)
T ss_pred HHHHhccCcChhHHHHHHHHHHHHHHHHHH
Confidence 466778888888888777765544444333
No 32
>COG4280 Predicted membrane protein [Function unknown]
Probab=22.21 E-value=3.8e+02 Score=20.84 Aligned_cols=51 Identities=20% Similarity=0.209 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHHHHHHHHHHHHhcc
Q 043698 106 LAIIGITIVLQLIMVEFLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIP 158 (171)
Q Consensus 106 ~~~i~~~~~l~~~~vp~l~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~i~ 158 (171)
+++..+++.+.++.+=.++..+...|++..+ ++.+.-...+-+-=++|.++
T Consensus 37 l~ga~lglalvl~l~lvlGk~L~lvPln~lq--iv~gvLLllFG~rw~Rsavr 87 (236)
T COG4280 37 LIGAVLGLALVLILTLVLGKLLYLVPLNYLQ--IVSGVLLLLFGYRWIRSAVR 87 (236)
T ss_pred HHHHHHHHHHHHHHHHHHccceeeeechHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443444578888888988765 33333333333333444443
No 33
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=20.62 E-value=93 Score=20.58 Aligned_cols=17 Identities=12% Similarity=0.489 Sum_probs=14.9
Q ss_pred CChhHHHHHHHHHHHHH
Q 043698 132 LNWGQWAACIGIAAMSW 148 (171)
Q Consensus 132 l~~~~w~~~~~~~~~~~ 148 (171)
+++.+|+++++++++++
T Consensus 4 ig~~elliIlvV~lllf 20 (94)
T COG1826 4 IGWSELLIILVVALLVF 20 (94)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 78899999998888887
No 34
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=20.56 E-value=79 Score=22.07 Aligned_cols=37 Identities=5% Similarity=-0.189 Sum_probs=15.5
Q ss_pred hhcccccCChhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 043698 125 KFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSG 161 (171)
Q Consensus 125 ~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~i~r~~ 161 (171)
-+|+..|..+.+...+....+......-+.+|.++.+
T Consensus 50 fvf~~~~p~p~~iffavcI~l~~~s~~lLI~WYR~gd 86 (118)
T PF10856_consen 50 FVFPQDPPKPLHIFFAVCILLICISAILLIFWYRQGD 86 (118)
T ss_pred EEecCCCCCceEEehHHHHHHHHHHHHhheeehhcCC
Confidence 3455444443333332222222222233456666654
No 35
>PF05570 DUF765: Circovirus protein of unknown function (DUF765); InterPro: IPR008484 This family consists of several short (27-30aa) porcine and bovine circovirus ORF6 proteins of unknown function.
Probab=20.19 E-value=49 Score=16.57 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=10.3
Q ss_pred CCCCccccCCCCCCC
Q 043698 12 EQPTNDLMSKPPVGR 26 (171)
Q Consensus 12 ep~~~~~M~r~PR~~ 26 (171)
.|+-.|++.++|.++
T Consensus 8 spapsdils~~pqs~ 22 (29)
T PF05570_consen 8 SPAPSDILSSKPQSK 22 (29)
T ss_pred CCCcHHHHhcCcccc
Confidence 466678888887653
No 36
>PRK09546 zntB zinc transporter; Reviewed
Probab=20.02 E-value=3.3e+02 Score=21.99 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=6.7
Q ss_pred hhhhhcccc--cCChhH
Q 043698 122 FLKKFADTE--RLNWGQ 136 (171)
Q Consensus 122 ~l~~~f~~~--~l~~~~ 136 (171)
.+..++|+. .++..+
T Consensus 279 ~IaGiyGMNf~~mPel~ 295 (324)
T PRK09546 279 FLTGLFGVNLGGIPGGG 295 (324)
T ss_pred HHHhhhccccCCCCCcC
Confidence 344555543 344443
Done!