Query 043705
Match_columns 614
No_of_seqs 149 out of 1086
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:33:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02969 9-cis-epoxycarotenoid 100.0 5E-130 1E-134 1101.4 54.4 599 5-612 1-610 (610)
2 COG3670 Lignostilbene-alpha,be 100.0 4E-108 9E-113 858.5 36.2 469 66-613 18-489 (490)
3 PLN02258 9-cis-epoxycarotenoid 100.0 3E-102 7E-107 866.8 45.1 451 68-613 113-584 (590)
4 PF03055 RPE65: Retinal pigmen 100.0 1E-103 3E-108 874.3 33.4 471 71-612 1-486 (486)
5 PLN02491 carotenoid 9,10(9',10 100.0 2E-101 4E-106 859.1 44.4 457 70-613 52-537 (545)
6 KOG1285 Beta, beta-carotene 15 100.0 2E-57 4.2E-62 499.7 31.7 452 87-613 37-576 (582)
7 KOG1285 Beta, beta-carotene 15 99.8 3.7E-18 8E-23 189.3 13.4 280 72-405 110-405 (582)
8 COG3823 Glutamine cyclotransfe 57.9 7.1 0.00015 38.9 2.2 37 193-229 95-132 (262)
9 PF13570 PQQ_3: PQQ-like domai 57.6 8.9 0.00019 27.2 2.2 28 190-217 13-40 (40)
10 PF10282 Lactonase: Lactonase, 54.4 67 0.0014 34.2 9.3 94 198-331 48-161 (345)
11 PF02239 Cytochrom_D1: Cytochr 45.5 1.2E+02 0.0026 32.9 9.6 75 497-597 45-120 (369)
12 KOG0303 Actin-binding protein 38.7 80 0.0017 34.4 6.5 66 189-301 230-296 (472)
13 COG2706 3-carboxymuconate cycl 30.2 3.6E+02 0.0077 29.1 9.7 72 196-307 49-127 (346)
14 PF02736 Myosin_N: Myosin N-te 24.4 64 0.0014 23.5 2.2 31 548-581 4-34 (42)
15 TIGR02276 beta_rpt_yvtn 40-res 22.7 1.2E+02 0.0027 20.9 3.4 28 571-605 12-39 (42)
16 TIGR03866 PQQ_ABC_repeats PQQ- 21.2 4.9E+02 0.011 25.6 8.8 68 521-605 229-296 (300)
No 1
>PLN02969 9-cis-epoxycarotenoid dioxygenase
Probab=100.00 E-value=5.5e-130 Score=1101.40 Aligned_cols=599 Identities=66% Similarity=1.196 Sum_probs=508.0
Q ss_pred cccccCCCCCCCCcccCCCCcccCCCCCCCCceeEeecCCCCceecccCCccccCCCCccccccchhhccccCccccCCC
Q 043705 5 LLHKISPPRFLSPLTALRPLQKVSTPQAKIPRAVSLTKPDNNQVSISTPTTVQAEIDDSTAAFWDYQFLFVSQRSETTAP 84 (614)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~f~~~~~E~~~~ 84 (614)
++| .+|+|+++|+++|+.|++.++|..+.+|+|+|++|++.. +++.+. +.|+..++||||+++|+++++|..++
T Consensus 1 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~f~~~~~E~~~~ 74 (610)
T PLN02969 1 PSH-PIPTKFPPPLKLPPIHHHPSPPPLAPPRAISISTPDSTA---LARTGT--EDDSTSAAFWDYQFLFVSQRSETKDP 74 (610)
T ss_pred CCC-CCCccCCCcccCCcccCCCCCcccccccceeeecCccce---eccccc--CCCcchhHHHHhhhhhcCChhhcCCc
Confidence 356 569999999999987776666655559999999987763 333221 56999999999999999999996467
Q ss_pred eeeeeeecCCCCCCCCceEEEecCCccccCCCCcccCCCccccEEEEEEeCCCCcEEEEEEEeccchhhhhcCCCCccce
Q 043705 85 ITLHLVDGAIPSDFPSGTYYLTGPGLFTDDHGSTVHPLDGHGYLRAFEFDGVTGEVKYMAKYVKTDAQVEEHDPQTDTWR 164 (614)
Q Consensus 85 ~~l~~v~G~IP~~L~~GtlyRnGPg~~~~~~~~~~H~FDGdGmv~~f~f~~~~g~v~y~~RyV~T~~~~~e~~~~~~~~~ 164 (614)
++|.+|+|+||+|||+|||||||||+++.+++++.||||||||||+|+|++|.++|+|+||||||++|++|+++++..++
T Consensus 75 ~~l~~V~G~IP~~L~~GtlyRnGPg~~~~~~~~~~HwFDGdGmlh~f~f~~G~~~v~y~nRfVrT~~~~~E~~ag~~~~~ 154 (610)
T PLN02969 75 VRLRVVEGAIPSDFPSGTYYLAGPGLFTDDHGSTVHPLDGHGYLRAFHIDGGDRPVQYSARYVKTEAKKEEHDPETRTWR 154 (610)
T ss_pred cccceEEecCCchhcCCEEEEecCCcccCCCCCccccCCCCceEEEEEEcCCCeEEEEEeeeeccHHHHHHHHhCCccee
Confidence 88877999999999999999999999998777789999999999999999743369999999999999999999887788
Q ss_pred eeecCCcccccCCcccCCcccccCcceeeeEEECCEEEEEeeCCCceeecCCCCceeeeeccCCCCCcCC---CCCcchh
Q 043705 165 FTHRGPFSVLKGGKKFGNTKVMKNVANTSVLKWGGKLLCLWEGGDPYEIESGTLDTIGQLQMMDGGDSLG---KNSKDLW 241 (614)
Q Consensus 165 ~~~~g~fs~~~~~~~~~n~~~~kn~ANT~V~~~ggrLlAl~E~g~P~~lDp~TLeT~g~~~~~~~~~~~~---~~~~~~~ 241 (614)
++++|||+.++++..++|.+.+||+|||||++||||||||||+|.||+|||+||||+|.++|.+.++... ...+++|
T Consensus 155 ~~~~~pfs~~~~~~~~~~~~~~kn~ANT~V~~~gg~LlAl~E~g~P~~lDP~TLeT~G~~d~~~~~~~~~~~~~~~~~~~ 234 (610)
T PLN02969 155 FTYRGPFSVLKGGKRVGNVKVMKNVANTSVLKWGGRLLCLWEGGEPYEIDSGTLETIGRFDLAPDDDSSKDDRLQGSDAW 234 (610)
T ss_pred eeeccchhcccCCCCcccccccccCCCcceeeeCCEEEEecCCCCCeEcCcCccceeecccccccccccccccccccccc
Confidence 8999999988765555666678999999999999999999999999999999999999999955432222 2347899
Q ss_pred hhhhhhccccccceeeeCCccccCCCcCCCCCCcEEEEEeccccCCCCCccEEEEEEcCCCcEEeeEEEeecccceeeee
Q 043705 242 DVAAEMLKPILYGVFKMPPKRLLSHYKLDAPRNRLLTVSCNAEDMLLPRSNFTFYEFDSNFKLLNKQEFNILDHLMIHDW 321 (614)
Q Consensus 242 ~~~~~~~~p~l~g~~~~p~~~~tAHpk~Dp~tg~l~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~p~~~~iHdf 321 (614)
|+++++++|.|+|++++|...||||||+||.||+|++|+|+.++++++++.+++|++|++|++++.+++++|.++|||||
T Consensus 235 ~~~~~~~~~~l~g~~~~p~~~ftAHpK~DP~tg~lv~f~~~~~~~~~~~~~~~~y~~d~~G~~~~~~~~~~p~~~~iHDf 314 (610)
T PLN02969 235 DLAARLLKPILTGVFKMPKKRLLSHYKIDGRRNRLLVVTCNAEDMLLPRSNFTFYEFDADFKLVQRKEFKLDDHLMIHDW 314 (610)
T ss_pred cccccccccccccccccCCccccccCCcCCCCCCEEEEEeccccccCCCceeEEEEECCCCCEecceeecCCCcceeeee
Confidence 99999999999999999989999999999999999999999876667788999999999999999999999999999999
Q ss_pred eecCceEEEeecceeechhhhhhhhcCCCcceecceeCCCCCCccEEEEeCCCCCCCCccceeeeEEeCCCceeeeeece
Q 043705 322 AFTDTHYILFANRVKLDVLGSMTAVSGLSPMISALSVNPSKPTSPVYLLPRFPNKSVGVRDWRVPVEAPSQMWLLHVGNA 401 (614)
Q Consensus 322 a~Teny~V~~~~p~~~d~~~~~~~~~G~~~~~~~l~~~p~~~t~~i~vipR~~~~~~~~~~w~~~~~~~~~~f~fH~~NA 401 (614)
+|||||+||+++|+++|+.++|.++.|..++++||+|+|++++++|+||||++++....++|+++++++++||+||++||
T Consensus 315 aiTeny~Vf~~~P~~~d~~~~l~~~~G~~~~~~~l~wdp~~~t~~~~VipR~~~~~~~~~~W~v~~e~~~~~f~fH~~NA 394 (610)
T PLN02969 315 AFTDTHYVLLANRVKLDVPGSLLAMAGLSPMISALAVDPSRPSSPVYLLPRFPEKEAGGRDWRVPVEVPSQLWLIHVGNA 394 (610)
T ss_pred eccCCEEEEEECceecCHHHHHHHhhcCCCchheeEECCCCCccEEEEEECcCCCcccceeeeeEEeeCCCeEEEeccce
Confidence 99999999999999999988776677888899999999999964599999998653236788777899755999999999
Q ss_pred eeccCCCCCeEEEEEEee--eccCCcccccccccccCCCCCCcccccccccccccCCeEEEEEEEccCCCceeEeecccc
Q 043705 402 FELKDVDGNTEIQIHACS--CSYEWFNFQNLFGYNWQSGRLDPSIMNLKESEYQLLPHLVQVSISLDVDGNCQKCTVEPL 479 (614)
Q Consensus 402 yEe~d~~g~~~v~iv~d~--~~y~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~L~R~~idl~~~g~~~~~~~~~l 479 (614)
||+++++|+. +|++|+ |.|+++++..+++++|....+++.+++...+. ...++|+||+||+.+.+.+..|+.+.+
T Consensus 395 fEe~~~~g~~--~Ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~r~~idl~~~g~~~~~~~~~l 471 (610)
T PLN02969 395 YEERDDRGNL--RIQLHASACSYQWFSFHRMFGYDWQNKKLDPSVMNNAKGK-ELLPHLVQVSIDLDRTGDCRSCDVEPL 471 (610)
T ss_pred eecCCCCCce--EEEEEEeccccccccccccccccccccccCcchhcccCcc-cccceEEEEEEeCCcCCccccccceee
Confidence 9986544642 344555 56888888777777777666555544433332 245799999999974455544555556
Q ss_pred c-ccCCCccCcccCCCCCCCccceEEEeeecCCcCCCCCCCCCeeEEEeccCCcEEEEEcCCCccccccEEeeC-----C
Q 043705 480 N-QWKKSSDFPIINPTYSGQKTTCIYAATSLGTRRALPHFPFDTVVKLNVLTKSVQTWSVGTRRFIGEPIFVPK-----G 553 (614)
Q Consensus 480 ~-~~~~~~EfP~in~~~~G~~yry~Y~~~~~~~~~~~~~~~~~~lvK~D~~~g~~~~w~~~~~~~~gEPvFVPr-----~ 553 (614)
. .++.++|||+||++|.||+|||+|+++.++.+...+..++|+|+|+|+++|+++.|++++++|++||||||| +
T Consensus 472 ~~~~~~~~EFP~In~~~~Gr~~ry~Y~~~~~~~~~~~~~~~~~~l~K~D~~tg~~~~w~~g~~~~~~EPvFVPr~~~p~~ 551 (610)
T PLN02969 472 SNQWEKPADFPVINPSFSGQKNEYTYAAAASGSRKTLPHFPFDSVVKLDVPDGSARSWSTGARRFVGEPVFVPRKSSQGG 551 (610)
T ss_pred ccccccccccCccChhHCCCcceEEEEeeecCCCcccccCCcCeEEEEECCCCCEEEEEeCCCCcccCCEEecCCCCCCC
Confidence 3 246789999999999999999999988765433233456899999999999999999999999999999999 4
Q ss_pred CCCCCeEEEEEEEeCCCCeeEEEEEcCCCCCCCCceeEEEEcccccCCCccccccccCC
Q 043705 554 VEEDDGYLLVIEYAVSIQRCYLIILNPKKIGEGDALVARLEVPRHLNFPLGFHGFWDNN 612 (614)
Q Consensus 554 ~~EDDG~LL~~v~d~~~~~s~L~VLDA~~l~eg~~pVAr~~lP~~~~vP~GfHG~w~~~ 612 (614)
.+|||||||++|+|..+++|+|+||||++|++|++||||++||+++++|+||||+|+++
T Consensus 552 ~~EDDG~Ll~~v~d~~~~~S~LvILDAk~~~eg~~PVAri~LP~~v~~P~GfHG~w~~~ 610 (610)
T PLN02969 552 GEEDDGYVLVVEYAVSDERCYLVILDAKRIGERDAVVAKLEVPKHLTFPMGFHGFWADE 610 (610)
T ss_pred CccCCcEEEEEEEECCCCceEEEEEeCCCCcccCceeEEEECCcccCCCccccccccCC
Confidence 58999999999999999999999999999999777999999999966699999999874
No 2
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4e-108 Score=858.53 Aligned_cols=469 Identities=28% Similarity=0.436 Sum_probs=391.2
Q ss_pred cccchhhccccCccccCCCeeeeeeecCCCCCCCCceEEEecCCccccCCCCcccCCCccccEEEEEEeCCCCcEEEEEE
Q 043705 66 AFWDYQFLFVSQRSETTAPITLHLVDGAIPSDFPSGTYYLTGPGLFTDDHGSTVHPLDGHGYLRAFEFDGVTGEVKYMAK 145 (614)
Q Consensus 66 ~~~d~~~~f~~~~~E~~~~~~l~~v~G~IP~~L~~GtlyRnGPg~~~~~~~~~~H~FDGdGmv~~f~f~~~~g~v~y~~R 145 (614)
.-.+|.++|++++.|+ ....|..|+|+||++| +|+|||||||++.+++..++||||||||||+|.|.++ |+|+|+||
T Consensus 18 ~~~~w~g~~a~~~~E~-~~t~L~~V~G~iPa~L-~Gtl~RNGP~~l~~~g~~~~HwFDGDGMI~~v~f~~g-g~a~yrnr 94 (490)
T COG3670 18 SNPYWTGGFAPVRTEF-DATDLTDVEGRIPADL-DGTLYRNGPNPLHRGGIATYHWFDGDGMIHAVAFRDG-GRATYRNR 94 (490)
T ss_pred CchhhhccCCccceee-cccccceeeecCCccc-CceEEccCCCccccCCccccCCccCCCeEEEEEecCC-CceEEEEE
Confidence 3467889999999996 4667888999999999 9999999999999988889999999999999999983 69999999
Q ss_pred EeccchhhhhcCCCCccceeeecCCcccccCCcccCC-cccccCcceeeeEEECCEEEEEeeCCCceeecCCCCceeeee
Q 043705 146 YVKTDAQVEEHDPQTDTWRFTHRGPFSVLKGGKKFGN-TKVMKNVANTSVLKWGGKLLCLWEGGDPYEIESGTLDTIGQL 224 (614)
Q Consensus 146 yV~T~~~~~e~~~~~~~~~~~~~g~fs~~~~~~~~~n-~~~~kn~ANT~V~~~ggrLlAl~E~g~P~~lDp~TLeT~g~~ 224 (614)
||||++|.+|+++++ ++++|.+...+.+.+..+ ...+||.|||||+.|+++|+||||+|.||+|||.||+|+|+.
T Consensus 95 fVrT~g~~ae~~Ag~----~l~~g~~~~~p~~~~~~~~~~~lkn~aNTsVi~~~~~LlalwEgG~pyrLdp~tL~TlG~~ 170 (490)
T COG3670 95 FVRTQGYLAENEAGK----PLWGGLGETQPPGVRPHSRTGDLKNAANTSVIMHGDELLALWEGGSPYRLDPDTLETLGKE 170 (490)
T ss_pred EEeeceeehhhhcCc----ceeccccccCCCCcCcCccccccccCCccceEeehhHHHHHHhcCCccccChhHhhhcChh
Confidence 999999999998864 456665544444333322 245899999999999999999999999999999999999999
Q ss_pred ccCCCCCcCCCCCcchhhhhhhhccccccceeeeCCccccCCCcCCCCCCcEEEEEeccccCCCCCccEEEEEEcCCCcE
Q 043705 225 QMMDGGDSLGKNSKDLWDVAAEMLKPILYGVFKMPPKRLLSHYKLDAPRNRLLTVSCNAEDMLLPRSNFTFYEFDSNFKL 304 (614)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~g~~~~p~~~~tAHpk~Dp~tg~l~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 304 (614)
+|+|. . ....|+||||+||.||||++|+|... .+.+++|++|++|++
T Consensus 171 ~~~g~-~---------------------------~g~~fsAHPkvDp~tgel~~fg~s~~-----~~~l~~~~v~~~G~l 217 (490)
T COG3670 171 DFGGD-P---------------------------LGGPFSAHPKVDPDTGELFNFGYSFA-----LPYLTYYVVDADGEL 217 (490)
T ss_pred hcCCC-C---------------------------CCCccccCccCCCCCceEEEEEeccC-----CCeeEEEEECCCCcE
Confidence 99763 1 11249999999999999999999863 348999999999999
Q ss_pred EeeEEEeecccceeeeeeecCceEEEeecceeechhhhhhhhcCCCcceecceeCCCCCCccEEEEeCCCCCCCCcccee
Q 043705 305 LNKQEFNILDHLMIHDWAFTDTHYILFANRVKLDVLGSMTAVSGLSPMISALSVNPSKPTSPVYLLPRFPNKSVGVRDWR 384 (614)
Q Consensus 305 ~~~~~~~~p~~~~iHdfa~Teny~V~~~~p~~~d~~~~~~~~~G~~~~~~~l~~~p~~~t~~i~vipR~~~~~~~~~~w~ 384 (614)
++.+.+++|++.|||||++|+||+||+++|+.+|.... .+|+....+|++|.|+.+++ |.||||.++ . +++|
T Consensus 218 ~r~~~i~lpg~~~~HDFa~T~~y~If~~~Pv~~d~~p~---ll~~~~~~~~~~~~pe~ptr-i~V~pR~g~-~--~irw- 289 (490)
T COG3670 218 RRTVDIPLPGPPMMHDFAITENYLIFFDLPVTFDPVPR---LLGRPADGHAMRWRPELPTR-ILVLPREGD-S--EIRW- 289 (490)
T ss_pred EEeeeeecCCCccceeeeecCceEEEEeCcccccchhH---HhcCcccccceeecCCCCcE-EEEEccCCC-C--ceeE-
Confidence 99999999999999999999999999999999995322 24555578999999999995 999999974 2 5789
Q ss_pred eeEEeCCCceeeeeeceeeccCCCCCeEEEEEEeeeccCCcccccccccccCCCCCCcccccccccccccCCeEEEEEEE
Q 043705 385 VPVEAPSQMWLLHVGNAFELKDVDGNTEIQIHACSCSYEWFNFQNLFGYNWQSGRLDPSIMNLKESEYQLLPHLVQVSIS 464 (614)
Q Consensus 385 ~~~~~~~~~f~fH~~NAyEe~d~~g~~~v~iv~d~~~y~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~L~R~~id 464 (614)
||++ +||+||++||||+.| +. |..|.|+|+++... ..+ +...+.. .-.....++|+||+|+
T Consensus 290 --fE~~-p~fvfH~~NAye~~d--~~----v~~d~~~~~~~~~~--~~~-------~~~~~~g-~~~~~a~~~L~R~~ln 350 (490)
T COG3670 290 --FEAE-PGFVFHFLNAYEEGD--EV----VLVDFLRYDDFSQT--LDT-------LGEGPGG-DFRTLAPPRLHRWTLN 350 (490)
T ss_pred --EecC-CeEEEEecceeecCC--Cc----EEEEEEeecccccc--ccc-------ccccccc-cccccCCCcceEEEEc
Confidence 9998 599999999999974 44 66788999865221 111 0111110 0011125799999999
Q ss_pred ccCCCceeEeecccccccCCCccCcccCCCCCCCccceEEEeeecCCcCCCCCCCCCeeEEEeccCCcEEEEEcCCCccc
Q 043705 465 LDVDGNCQKCTVEPLNQWKKSSDFPIINPTYSGQKTTCIYAATSLGTRRALPHFPFDTVVKLNVLTKSVQTWSVGTRRFI 544 (614)
Q Consensus 465 l~~~g~~~~~~~~~l~~~~~~~EfP~in~~~~G~~yry~Y~~~~~~~~~~~~~~~~~~lvK~D~~~g~~~~w~~~~~~~~ 544 (614)
|+++. +.+ +.+. +..||||+||+++.|++|||.|+++..+.. .+... +++|+|+|++||+.+.|++++++|+
T Consensus 351 l~tg~-v~~---~~~~--~r~~EFP~in~~~~G~p~RY~Y~~~~rp~~-~l~~g-~~~l~k~D~~tg~~~~~~~g~~~y~ 422 (490)
T COG3670 351 LKTGK-VAE---EQLD--DRACEFPRINPRYVGQPYRYTYMSGARPGT-FLFQG-LQTLAKHDLETGTSQVYSFGPRGYG 422 (490)
T ss_pred cccch-hHH---Hhhh--hhhcccCccChhhcCCceEEEEEecccCCc-cchhh-cceeEEEeccCCcEEEEecCCCCcc
Confidence 98754 322 3333 678999999999999999999999655432 12223 5669999999999999999999999
Q ss_pred cccEEeeC--CCCCCCeEEEEEEEeCCCCeeEEEEEcCCCCCCCCceeEEEEcccccCCCccccccccCCC
Q 043705 545 GEPIFVPK--GVEEDDGYLLVIEYAVSIQRCYLIILNPKKIGEGDALVARLEVPRHLNFPLGFHGFWDNNT 613 (614)
Q Consensus 545 gEPvFVPr--~~~EDDG~LL~~v~d~~~~~s~L~VLDA~~l~eg~~pVAr~~lP~~~~vP~GfHG~w~~~~ 613 (614)
+||||||| +.+|||||||++|||...++|+|+||||++++++ ||||+.||++ ||+||||.|++.+
T Consensus 423 ~E~vfvPrpg~~~EdDGwLl~~vyd~~~~~Sel~v~DA~~~~~e--pIa~l~Lp~~--vP~gfHG~w~~~~ 489 (490)
T COG3670 423 SEPVFVPRPGSSAEDDGWLLTLVYDGDRHASELLVFDAQRVTAE--PIARLALPQR--VPYGFHGNWVPTE 489 (490)
T ss_pred cccccccCCCCCcCCCcEEEEEEEecCCCcceEEEEecccCCCC--cceEEecccc--ccccccccccccc
Confidence 99999999 4689999999999999999999999999999984 9999999998 6999999999875
No 3
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED
Probab=100.00 E-value=3.2e-102 Score=866.75 Aligned_cols=451 Identities=22% Similarity=0.389 Sum_probs=368.3
Q ss_pred cchhhccccCccccCCCeeeeeeecCCCCCCCCceEEEecCCccccCCCCcccCCCccccEEEEEEeCCCCcEEEEEEEe
Q 043705 68 WDYQFLFVSQRSETTAPITLHLVDGAIPSDFPSGTYYLTGPGLFTDDHGSTVHPLDGHGYLRAFEFDGVTGEVKYMAKYV 147 (614)
Q Consensus 68 ~d~~~~f~~~~~E~~~~~~l~~v~G~IP~~L~~GtlyRnGPg~~~~~~~~~~H~FDGdGmv~~f~f~~~~g~v~y~~RyV 147 (614)
..++++|+++++|. ....|. |+|+||+|| +|||||||||+.+.+. ..+||||||||||+|+|++ |+|+|+||||
T Consensus 113 ~~l~g~faPv~ee~-~~~~l~-V~G~IP~~L-~Gty~RNGPnp~f~p~-~~~H~FDGDGMvhav~f~d--G~a~y~~RfV 186 (590)
T PLN02258 113 VQIAGNFAPVPEQP-VRHNLP-VTGRIPDCI-DGVYVRNGANPLFEPV-AGHHLFDGDGMVHAVRIGN--GSASYACRFT 186 (590)
T ss_pred eeccCCCcCccccC-Ccccce-EEeeCCCCC-CeEEEEeCCCCCCCCC-CCCccccCCceEEEEEECC--CeEEEEeeee
Confidence 45679999998884 455676 899999999 9999999999765433 3589999999999999996 8999999999
Q ss_pred ccchhhhhcCCCCccceeeecCCcccccC------------CcccCC--cccccCcceeeeEEECCEEEEEeeCCCceee
Q 043705 148 KTDAQVEEHDPQTDTWRFTHRGPFSVLKG------------GKKFGN--TKVMKNVANTSVLKWGGKLLCLWEGGDPYEI 213 (614)
Q Consensus 148 ~T~~~~~e~~~~~~~~~~~~~g~fs~~~~------------~~~~~n--~~~~kn~ANT~V~~~ggrLlAl~E~g~P~~l 213 (614)
||++|++|+++|+.++ ++.|+.+.+ ....+. ....+|+|||||++|+||||||||+|.||+|
T Consensus 187 rT~~~~~E~~agr~l~----~~~~g~~~~~~g~~r~~~~~~r~~~~~~d~~~~~~~ANT~vv~~~grLlAL~E~g~Py~l 262 (590)
T PLN02258 187 ETNRLVQERALGRPVF----PKAIGELHGHSGIARLMLFYARGLFGLVDASRGTGVANAGLVYFNGRLLAMSEDDLPYQV 262 (590)
T ss_pred cchhHHHHHhcCCccc----ccccccccccccccccchhhccccccccccccccCCCceeEEEECCEEEEEEcCCCceEe
Confidence 9999999999876543 222322210 000111 1124789999999999999999999999999
Q ss_pred cCC---CCceeeeeccCCCCCcCCCCCcchhhhhhhhccccccceeeeCCccccCCCcCCCCCCcEEEEEeccccCCCCC
Q 043705 214 ESG---TLDTIGQLQMMDGGDSLGKNSKDLWDVAAEMLKPILYGVFKMPPKRLLSHYKLDAPRNRLLTVSCNAEDMLLPR 290 (614)
Q Consensus 214 Dp~---TLeT~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~g~~~~p~~~~tAHpk~Dp~tg~l~~~~~~~~~~~~~~ 290 (614)
|++ ||||+|.+||+|.+. ..||||||+||.||||++|+|+. +..
T Consensus 263 ~~d~~~TLeT~G~~df~g~l~-----------------------------~~ftAHPKvDP~TGel~~f~y~~----~~~ 309 (590)
T PLN02258 263 RITGDGDLETVGRYDFDGQLD-----------------------------SSMIAHPKVDPVTGELFALSYDV----VKK 309 (590)
T ss_pred cCCCCCCcccCcccccCCccC-----------------------------cccccCceEcCCCCeEEEEEEec----cCC
Confidence 754 999999999977531 24999999999999999999985 234
Q ss_pred ccEEEEEEcCCCcEEeeEEEeecccceeeeeeecCceEEEeecceeechhhhhhhhcCCCcceecceeCCCCCCccEEEE
Q 043705 291 SNFTFYEFDSNFKLLNKQEFNILDHLMIHDWAFTDTHYILFANRVKLDVLGSMTAVSGLSPMISALSVNPSKPTSPVYLL 370 (614)
Q Consensus 291 ~~~~~~~~d~~g~~~~~~~~~~p~~~~iHdfa~Teny~V~~~~p~~~d~~~~~~~~~G~~~~~~~l~~~p~~~t~~i~vi 370 (614)
+.+++|++|++|++.+.+++.+|.++|||||+|||||+||+++|+.+|+.+++ .|. +++.|+|+++++ |+||
T Consensus 310 p~l~~~~~d~~G~~~~~~~i~lp~p~~~HDFaiTenY~Vf~d~Pl~~~~~~~~---~g~----~~~~~d~~~~sr-fgVi 381 (590)
T PLN02258 310 PYLKYFRFSPDGEKSPDVEIPLDQPTMMHDFAITENFVVIPDQQVVFKLSEMI---RGG----SPVVYDKNKTSR-FGVL 381 (590)
T ss_pred CcEEEEEECCCCCEEeeEEeeCCCCccccceeccCceEEEEccCceEcHHHHh---hCC----CceEECCCCCcE-EEEE
Confidence 67999999999999999999999999999999999999999999999987753 343 467899999995 9999
Q ss_pred eCCCCCCCCccceeeeEEeCCCceeeeeeceeeccCCCCCeEEEEEEeeeccCCcccccccccccCCCCCCccccccccc
Q 043705 371 PRFPNKSVGVRDWRVPVEAPSQMWLLHVGNAFELKDVDGNTEIQIHACSCSYEWFNFQNLFGYNWQSGRLDPSIMNLKES 450 (614)
Q Consensus 371 pR~~~~~~~~~~w~~~~~~~~~~f~fH~~NAyEe~d~~g~~~v~iv~d~~~y~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 450 (614)
||++++.. .++| |+++ +||+||++|||||++ +++ ||+|.|++.+.+. .+. . .
T Consensus 382 pR~~~~~~-~irw---fe~p-~~f~fH~~NA~Ee~~-~~~----VVvd~~~~~~~~~--~~~----------~------~ 433 (590)
T PLN02258 382 PKNATDAS-EIQW---VEVP-DCFCFHLWNAWEEPE-TDE----VVVIGSCMTPPDS--IFN----------E------S 433 (590)
T ss_pred ECCCCCCC-ceEE---EecC-CcEEEecccccccCC-CCe----EEEEEecccChhh--hcc----------c------c
Confidence 99985433 5789 9998 599999999999853 243 7778888764321 110 0 0
Q ss_pred ccccCCeEEEEEEEccCCCceeEeecccccc-cCCCccCcccCCCCCCCccceEEEeeecCCcCCCCCCCCCeeEEEecc
Q 043705 451 EYQLLPHLVQVSISLDVDGNCQKCTVEPLNQ-WKKSSDFPIINPTYSGQKTTCIYAATSLGTRRALPHFPFDTVVKLNVL 529 (614)
Q Consensus 451 ~~~~~~~L~R~~idl~~~g~~~~~~~~~l~~-~~~~~EfP~in~~~~G~~yry~Y~~~~~~~~~~~~~~~~~~lvK~D~~ 529 (614)
.....++|+||+|||+++ .+.. +.+.. .+.++|||+||++|.||+|||+|+++.++ ...+++|+|+|++
T Consensus 434 ~~~~~~~L~r~ridl~tg-~~~~---~~l~~~~~~~~EFP~In~~~~Grk~Ry~Y~~~~~~------~~~~~givK~Dl~ 503 (590)
T PLN02258 434 DESLRSVLSEIRLNLRTG-ESTR---RPIISGEQVNLEAGMVNRNLLGRKTRYAYLAIAEP------WPKVSGFAKVDLS 503 (590)
T ss_pred cccccceEEEEEEECCCC-ceee---eEeecCCCcccccceECHHHCCCccceEEEeccCC------CCCCCeEEEEECC
Confidence 112346899999999764 3322 23321 12689999999999999999999987542 2357999999999
Q ss_pred CCcEEEEEcCCCccccccEEeeCC--C-CCCCeEEEEEEEeCCCCeeEEEEEcCCCCCCCCceeEEEEcccccCCCcccc
Q 043705 530 TKSVQTWSVGTRRFIGEPIFVPKG--V-EEDDGYLLVIEYAVSIQRCYLIILNPKKIGEGDALVARLEVPRHLNFPLGFH 606 (614)
Q Consensus 530 ~g~~~~w~~~~~~~~gEPvFVPr~--~-~EDDG~LL~~v~d~~~~~s~L~VLDA~~l~eg~~pVAr~~lP~~~~vP~GfH 606 (614)
+|+++.|++|+++|+|||+||||+ . +|||||||++|+|..+++|+|+||||++|++ |||++||+| ||+|||
T Consensus 504 tg~~~~~~~g~g~~~gEPvFVPr~~~~~~EDDGylls~V~d~~~~~SeL~IlDA~~l~~----VArv~LP~r--VP~GFH 577 (590)
T PLN02258 504 TGEVKKYIYGEGRYGGEPFFVPRGSGSEAEDDGYILAFVHDEEKGKSELQVVNAVNLEL----EATVKLPSR--VPYGFH 577 (590)
T ss_pred CCcEEEEECCCCccccCCEeccCCCCCcccCCcEEEEEEEECCCCceEEEEEeCCCCcc----cEEEECCCC--CCCccc
Confidence 999999999999999999999993 3 4999999999999999999999999999984 999999999 699999
Q ss_pred ccccCCC
Q 043705 607 GFWDNNT 613 (614)
Q Consensus 607 G~w~~~~ 613 (614)
|+|++++
T Consensus 578 G~wv~~~ 584 (590)
T PLN02258 578 GTFISAE 584 (590)
T ss_pred ccccCHH
Confidence 9999864
No 4
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=100.00 E-value=1.4e-103 Score=874.32 Aligned_cols=471 Identities=35% Similarity=0.575 Sum_probs=335.2
Q ss_pred hhccccCccccCCCeeeeeeecCCCCCCCCceEEEecCCccc-cCCCCcccCCCccccEEEEEEeCCCCcEEEEEEEecc
Q 043705 71 QFLFVSQRSETTAPITLHLVDGAIPSDFPSGTYYLTGPGLFT-DDHGSTVHPLDGHGYLRAFEFDGVTGEVKYMAKYVKT 149 (614)
Q Consensus 71 ~~~f~~~~~E~~~~~~l~~v~G~IP~~L~~GtlyRnGPg~~~-~~~~~~~H~FDGdGmv~~f~f~~~~g~v~y~~RyV~T 149 (614)
+++|+++++|..+...++ |+|+||+|| +|||||||||+++ .++.++.||||||||||+|+|++ |+|+|+||||+|
T Consensus 1 ~g~f~~~~~E~~~~~~~~-v~G~iP~~L-~G~~~RnGP~~~~~~~~~~~~H~FDGdGmv~~~~f~~--g~v~y~~R~v~T 76 (486)
T PF03055_consen 1 SGGFAPVTEEVPDPEDLE-VEGEIPSWL-DGTLYRNGPGPFEVIGGRRYNHWFDGDGMVHAFRFDD--GRVTYRNRFVRT 76 (486)
T ss_dssp SGCGS---SEE-EEEC-E-EEE---TT--EEEEEEEEBEESE-ETTEE-SCGGGSEBEEEEEEEET--TEEEEEEEE---
T ss_pred CCCCCCCccccCCccccE-EeeeCCCcC-CCeeEEEcCcccccCCCcccccccCCCCEEEEEEECC--CCceeEEEEeCc
Confidence 378999999964565687 789999999 9999999999999 88888999999999999999996 899999999999
Q ss_pred chhhhhcCCCCccceeeecCCcccccCCcc---------cCCcccccCcceeeeEEECCEEEEEeeCCCceeecCCCCce
Q 043705 150 DAQVEEHDPQTDTWRFTHRGPFSVLKGGKK---------FGNTKVMKNVANTSVLKWGGKLLCLWEGGDPYEIESGTLDT 220 (614)
Q Consensus 150 ~~~~~e~~~~~~~~~~~~~g~fs~~~~~~~---------~~n~~~~kn~ANT~V~~~ggrLlAl~E~g~P~~lDp~TLeT 220 (614)
++|++|++++ +.+++|.|++...... ..+....+|+|||||++|+||||||||+|.||+|||+||||
T Consensus 77 ~~~~~e~~~g----~~~~~g~~gt~~~~~~~~~~~~~~~~~~~~~~~~~aNt~v~~~~g~llAl~E~g~p~~lDp~TLeT 152 (486)
T PF03055_consen 77 EGYKAEREAG----RRLYRGEFGTVPLPDPCRNIFRFPMPFFRGKPKNNANTNVIPHGGRLLALWEGGPPYELDPDTLET 152 (486)
T ss_dssp HHHHHHHHHT----SS-SC-TTTCTTCSTHHHHTCHHTTS--GGGB-----SEEEEETTEEEEE-TTSEEEEEETTTCEE
T ss_pred HHHHHHHhcC----CceecccccccccCchhhhhhhhccccccccCCCCceeeeEEECCEEEEEEcCCCCEEechhHhhh
Confidence 9999998875 3455666665421111 11234589999999999999999999999999999999999
Q ss_pred eeeeccCCCCCcCCCCCcchhhhhhhhccccccceeeeCCccccCCCcCCCCCCcEEEEEeccccCCCCCccEEEEEEcC
Q 043705 221 IGQLQMMDGGDSLGKNSKDLWDVAAEMLKPILYGVFKMPPKRLLSHYKLDAPRNRLLTVSCNAEDMLLPRSNFTFYEFDS 300 (614)
Q Consensus 221 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~g~~~~p~~~~tAHpk~Dp~tg~l~~~~~~~~~~~~~~~~~~~~~~d~ 300 (614)
+|.++|++.+. ...+|||||+||+||++++|+++.... ..+.+++|++|+
T Consensus 153 ~g~~~~~~~l~----------------------------~~~~tAHp~~Dp~tg~l~~~~~~~~~~--~~~~~~~~~~~~ 202 (486)
T PF03055_consen 153 LGPFDFDGKLP----------------------------GQPFTAHPKIDPETGELYNFGYSLGPE--GSPKLTVYEIDP 202 (486)
T ss_dssp EEEEEGGGTSS----------------------------TS---S--EEETTTTTEEEEEEECSST--TSEEEEEEEE-T
T ss_pred cCccccccccc----------------------------CcccccCceEcccCCcEEEEEEEeccC--CCCcEEEEEEcC
Confidence 99999976531 235999999999999999999985321 157899999999
Q ss_pred CCcEEeeEEE-eecccceeeeeeecCceEEEeecceeechhhhhhhhcCCCcceecceeCCCCCCccEEEEeCCCCCCCC
Q 043705 301 NFKLLNKQEF-NILDHLMIHDWAFTDTHYILFANRVKLDVLGSMTAVSGLSPMISALSVNPSKPTSPVYLLPRFPNKSVG 379 (614)
Q Consensus 301 ~g~~~~~~~~-~~p~~~~iHdfa~Teny~V~~~~p~~~d~~~~~~~~~G~~~~~~~l~~~p~~~t~~i~vipR~~~~~~~ 379 (614)
+|++++..+. .+|.++|||||+|||||+||+++|+++|+.+++ .|..+ +++|+|+|+++++ |+||||++++.
T Consensus 203 ~g~~~~~~~~~~~~~~~~iHdf~vT~~Y~V~~~~P~~~~~~~~~---~g~~~-~~~~~~~p~~~t~-~~VipR~~~~~-- 275 (486)
T PF03055_consen 203 DGKKIHRVPSFPLPRPSYIHDFAVTENYVVFPDNPLRFDPERLL---LGGSP-IDCLKWDPERPTR-FHVIPRDGGKS-- 275 (486)
T ss_dssp TSEEEEEEEESCCCS-B-----EE-SSEEEEEE-SEEE-HHHHH---TTCCT-GGCEEE-TTS-EE-EEEEETTTSCC--
T ss_pred ccceeEEeeeccCCCCcccccccccCceEEEEECCeEECHHHHh---hCCcc-cceEEECCCCCeE-EEEEECcCCCc--
Confidence 9987766665 999999999999999999999999999999865 34433 6899999999995 99999998753
Q ss_pred ccceeeeEEeCCCceeeeeeceeeccCCCCCeEEEEEEeeeccCCcccccccccccCCCCCCcccccccccccccCCeEE
Q 043705 380 VRDWRVPVEAPSQMWLLHVGNAFELKDVDGNTEIQIHACSCSYEWFNFQNLFGYNWQSGRLDPSIMNLKESEYQLLPHLV 459 (614)
Q Consensus 380 ~~~w~~~~~~~~~~f~fH~~NAyEe~d~~g~~~v~iv~d~~~y~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~L~ 459 (614)
.++| ++++ +||+||++||||++++++ +|++|.|.|++..+...+..+.. .+.. ........++|+
T Consensus 276 ~v~~---~~~~-~~~~~H~~NAyE~~dg~~----~iv~d~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~l~ 340 (486)
T PF03055_consen 276 PVRW---FEAP-PFFVFHFVNAYEDDDGGG----EIVLDACRYDDPEFLDSFYLDNL----RPDG---MDFNSDSPGRLR 340 (486)
T ss_dssp CEEE---EEET-TCEEEEEEEEEEETTT-T----EEEEEEEEECSSS-CGCSCHHHH----CC-H---HHCCCS-EEEEE
T ss_pred eeEE---EecC-ChhhccccceeecCCCce----EEEEEEeecCCcccccccchhcc----cccc---cccccCCCceEE
Confidence 4677 9997 699999999999865322 48899999998765432221100 0000 011223457999
Q ss_pred EEEEEccCC-CceeEeecccccccCC-CccCcccCCCCCCCccceEEEeeecCCcCCCCCCCCCeeEEEeccCCcEEEEE
Q 043705 460 QVSISLDVD-GNCQKCTVEPLNQWKK-SSDFPIINPTYSGQKTTCIYAATSLGTRRALPHFPFDTVVKLNVLTKSVQTWS 537 (614)
Q Consensus 460 R~~idl~~~-g~~~~~~~~~l~~~~~-~~EfP~in~~~~G~~yry~Y~~~~~~~~~~~~~~~~~~lvK~D~~~g~~~~w~ 537 (614)
||+||+... +.+ +.+.|. +. ++|||+||++|.|++|||+|+++...... ...++++|+|+|+++|+.+.|+
T Consensus 341 R~~idl~~~~~~~---~~~~l~--~~~~~EfP~in~~~~g~~~ry~Y~~~~~~~~~--~~~~~~~l~k~D~~tg~~~~~~ 413 (486)
T PF03055_consen 341 RYRIDLDSKTGRV---SEEPLD--DGNPCEFPRINPRYSGRPYRYVYAVGMDPERS--PGFPFNGLVKVDLETGEVQRWS 413 (486)
T ss_dssp EEEEETT--TCEE---EEEEEE--TTEEEEEEEE-GGGTTS--SEEEEEEECSCTS-----EEEEEEEEETTTTEEEEEE
T ss_pred EEEEcccccccee---EHhHhc--cCCCcccceeCcccCCCcccEEEEEeecccCC--cCcCCCEEEEEecccccceEEE
Confidence 999999832 222 345665 44 69999999999999999999887654332 2356899999999999999999
Q ss_pred cCCCccccccEEeeC--CCCCCCeEEEEEEEeCCCCeeEEEEEcCCCCCCCCceeEEEEcccccCCCccccccccCC
Q 043705 538 VGTRRFIGEPIFVPK--GVEEDDGYLLVIEYAVSIQRCYLIILNPKKIGEGDALVARLEVPRHLNFPLGFHGFWDNN 612 (614)
Q Consensus 538 ~~~~~~~gEPvFVPr--~~~EDDG~LL~~v~d~~~~~s~L~VLDA~~l~eg~~pVAr~~lP~~~~vP~GfHG~w~~~ 612 (614)
++++++++||+|||| +.+|||||||++|+|.++++|+|+||||++|++| ||||++||++ ||+||||+|+++
T Consensus 414 ~~~~~~~~EpvFVPr~~~~~EdDG~Ll~~v~~~~~~~s~l~VlDA~~l~~G--PvAr~~lP~~--vP~gfHG~w~~~ 486 (486)
T PF03055_consen 414 FGPGCFPGEPVFVPRPGGAEEDDGYLLSVVYDSDTNRSELLVLDAKDLEEG--PVARVELPHR--VPYGFHGSWVPE 486 (486)
T ss_dssp -TTTEEE--EEEEE-TTS-STT-EEEEEEEEETTTTCEEEEEEETTTTCE----EEEEEESS-----S-SEEEEEE-
T ss_pred CCCCceecceEeccCCCCCCCCceEEEEEEEECCCCccEEEEEeCCCCCcC--ceEEEECCCC--CCCCccccccCC
Confidence 999999999999999 4589999999999999999999999999999995 9999999998 599999999874
No 5
>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase
Probab=100.00 E-value=1.7e-101 Score=859.11 Aligned_cols=457 Identities=23% Similarity=0.389 Sum_probs=367.9
Q ss_pred hhhccccCccccCCCeeeeeeecCCCCCCCCceEEEecCCccccCCCCcccCCCccccEEEEEEeCCCCcEEEEEEEecc
Q 043705 70 YQFLFVSQRSETTAPITLHLVDGAIPSDFPSGTYYLTGPGLFTDDHGSTVHPLDGHGYLRAFEFDGVTGEVKYMAKYVKT 149 (614)
Q Consensus 70 ~~~~f~~~~~E~~~~~~l~~v~G~IP~~L~~GtlyRnGPg~~~~~~~~~~H~FDGdGmv~~f~f~~~~g~v~y~~RyV~T 149 (614)
++++|++++.|......|. |+|+||+|| +|||||||||++..+ ...+||||||||||+|+|++ |+|+|+||||||
T Consensus 52 l~g~fapv~~E~~~~~~l~-V~G~IP~~L-~Gt~~RNGPnp~~~~-~~~~H~FDGDGMlha~~f~~--G~a~y~~RfVrT 126 (545)
T PLN02491 52 LSGNFAPVRDETPPVKDLP-VRGHLPECL-NGEFVRVGPNPKFSP-VAGYHWFDGDGMIHGMRIKD--GKATYVSRYVKT 126 (545)
T ss_pred ccCCCcCccccCCcccCcE-EEeeCCCcC-CeEEEEeCCCCCCCC-CCCCccccCCccEEEEEEcC--CcEEEEeeeecc
Confidence 5699999999964344565 899999999 999999999987654 44689999999999999996 899999999999
Q ss_pred chhhhhcCCCCccceee--ecCCcccccCC---c--ccCC--cccccCcceeeeEEECCEEEEEeeCCCceee---cCCC
Q 043705 150 DAQVEEHDPQTDTWRFT--HRGPFSVLKGG---K--KFGN--TKVMKNVANTSVLKWGGKLLCLWEGGDPYEI---ESGT 217 (614)
Q Consensus 150 ~~~~~e~~~~~~~~~~~--~~g~fs~~~~~---~--~~~n--~~~~kn~ANT~V~~~ggrLlAl~E~g~P~~l---Dp~T 217 (614)
++|++|+++++.++... .+|.|+..... . ..+. ....+|+|||||++|+||||||||+|.||+| ||.|
T Consensus 127 ~~~~~E~~ag~~~~~~~~~~~g~~g~~~~~~~~~r~~~~~~~~~~~~~~ANT~vi~~~grLlAl~E~g~Py~l~~~Dp~t 206 (545)
T PLN02491 127 SRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQQLRAKLKVLDFSYGNGTGNTALIYHHGKLLALSEADKPYVVKVLEDGD 206 (545)
T ss_pred cchhhhhhcCcccccccccccccchhhhhhhhhhhccccccccccCCCCCceeEEEECCEEEEEEcCCCCeEecCCCCCC
Confidence 99999998876543310 11223211100 0 0010 0112689999999999999999999999996 7799
Q ss_pred CceeeeeccCCCCCcCCCCCcchhhhhhhhccccccceeeeCCccccCCCcCCCCCCcEEEEEeccccCCCCCccEEEEE
Q 043705 218 LDTIGQLQMMDGGDSLGKNSKDLWDVAAEMLKPILYGVFKMPPKRLLSHYKLDAPRNRLLTVSCNAEDMLLPRSNFTFYE 297 (614)
Q Consensus 218 LeT~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~g~~~~p~~~~tAHpk~Dp~tg~l~~~~~~~~~~~~~~~~~~~~~ 297 (614)
|||+|.+||+|.+. ..||||||+||.||||++|+|+.. .+.+++++
T Consensus 207 LeT~G~~df~g~l~-----------------------------~~~TAHPk~DP~TGel~~fgy~~~-----~p~~~y~~ 252 (545)
T PLN02491 207 LQTLGLLDYDKRLK-----------------------------HSFTAHPKVDPFTGEMFTFGYSHE-----PPYITYRV 252 (545)
T ss_pred cceeeecccCCccC-----------------------------cccccCccCcCCCCCEEEEEecCC-----CCcEEEEE
Confidence 99999999977531 249999999999999999999862 35699999
Q ss_pred EcCCCcEEeeEEEeecccceeeeeeecCceEEEeecceeechhhhhhhhcCCCcceecceeCCCCCCccEEEEeCCCCCC
Q 043705 298 FDSNFKLLNKQEFNILDHLMIHDWAFTDTHYILFANRVKLDVLGSMTAVSGLSPMISALSVNPSKPTSPVYLLPRFPNKS 377 (614)
Q Consensus 298 ~d~~g~~~~~~~~~~p~~~~iHdfa~Teny~V~~~~p~~~d~~~~~~~~~G~~~~~~~l~~~p~~~t~~i~vipR~~~~~ 377 (614)
+|++|++.+..++++|.++|||||+|||||+||+++|+.+++.+++ .|.+ .++.|+|+++++ |+||||++++.
T Consensus 253 ~~~~G~~~~~v~i~l~~~~~~HDFaiTeny~Vf~~~Pl~~~~~~~~---~~~~---~~~~~d~~~~~r-~gVipR~~~~~ 325 (545)
T PLN02491 253 ISKDGAMHDPVPITISEPIMMHDFAITENYAIFMDLPLYFRPKEMV---KEKK---FIYTFDATKKAR-FGVLPRYAKDE 325 (545)
T ss_pred ECCCCcCcceeEeecCCCceeeeeEecCCEEEEEECCcccCHHHHh---hCCC---ceeEECCCCCcE-EEEEECCCCCC
Confidence 9999999999999999999999999999999999999999987754 3433 458999999995 99999987543
Q ss_pred CCccceeeeEEeCCCceeeeeeceeeccCCCCCeEEEEEEeeeccCCcccccccccccCCCCCCcccccccccccccCCe
Q 043705 378 VGVRDWRVPVEAPSQMWLLHVGNAFELKDVDGNTEIQIHACSCSYEWFNFQNLFGYNWQSGRLDPSIMNLKESEYQLLPH 457 (614)
Q Consensus 378 ~~~~~w~~~~~~~~~~f~fH~~NAyEe~d~~g~~~v~iv~d~~~y~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 457 (614)
. .++| |++| +||+||++|||||+ | +||+|.|+|++.++.... ..+... .....++
T Consensus 326 ~-~irw---~e~~-~~f~fH~~NA~Ee~---~----~Ivvd~~~~~~~~~~~~~----------~~~~~~---~~~~~~~ 380 (545)
T PLN02491 326 L-MIRW---FELP-NCFIFHNANAWEEE---D----EVVLITCRLENPDLDMVN----------GKVKEK---LENFGNE 380 (545)
T ss_pred C-ceEE---EEcC-CceEeecCCccccC---C----eEEEEEeccCCCcccccc----------cccccc---ccccCce
Confidence 2 5789 9998 59999999999974 3 388899999765332110 000000 1113468
Q ss_pred EEEEEEEccCCCceeEeecccccccCCCccCcccCCCCCCCccceEEEeeecCCcCCCCCCCCCeeEEEeccC----CcE
Q 043705 458 LVQVSISLDVDGNCQKCTVEPLNQWKKSSDFPIINPTYSGQKTTCIYAATSLGTRRALPHFPFDTVVKLNVLT----KSV 533 (614)
Q Consensus 458 L~R~~idl~~~g~~~~~~~~~l~~~~~~~EfP~in~~~~G~~yry~Y~~~~~~~~~~~~~~~~~~lvK~D~~~----g~~ 533 (614)
|+||||||.+ |.+. .+.|+ +.++|||+||++|.||+|||+|++..++ ...+++|+|+|+++ |+.
T Consensus 381 l~r~ridl~t-g~~~---~~~l~--~~~~EfP~In~~~~Grk~ry~Y~~~~~~------~~~~~gl~K~D~~t~~~~g~~ 448 (545)
T PLN02491 381 LYEMRFNMKT-GAAS---QKKLS--ASAVDFPRVNESYTGRKQRYVYGTILDS------IAKVTGIIKFDLHAEPETGKK 448 (545)
T ss_pred EEEEEEECCC-Ccee---eeccC--CcccccCccCHHHCCCcccEEEEeccCC------ccCcCeEEEEEecccccCCcc
Confidence 9999999976 4332 24454 6789999999999999999999986542 12479999999996 443
Q ss_pred ---------EEEEcCCCccccccEEeeCC----CCCCCeEEEEEEEeCCCCeeEEEEEcCCCCCCCCceeEEEEcccccC
Q 043705 534 ---------QTWSVGTRRFIGEPIFVPKG----VEEDDGYLLVIEYAVSIQRCYLIILNPKKIGEGDALVARLEVPRHLN 600 (614)
Q Consensus 534 ---------~~w~~~~~~~~gEPvFVPr~----~~EDDG~LL~~v~d~~~~~s~L~VLDA~~l~eg~~pVAr~~lP~~~~ 600 (614)
..|++++++|+|||+||||+ .+|||||||++|+|..+++|+|+||||++|++| ||||++||+|
T Consensus 449 ~~~~~~~~~~~~~~g~~~~~~EPvFVPr~~~~~~~EDDG~ll~~V~d~~~~~S~l~VlDAk~~~~~--pVA~v~LP~r-- 524 (545)
T PLN02491 449 KLEVGGNVKGIFDLGPGRFGSEAIFVPREPGTTSEEDDGYLIFFVHDENTGKSSVNVIDAKTMSAD--PVAVVELPHR-- 524 (545)
T ss_pred ccccccceeEEEEcCCCccccCCEEecCCCCCCcccCCcEEEEEEEcCCCCcceEEEEeCCCCCCC--eeEEEECCCC--
Confidence 46899999999999999993 379999999999999999999999999999984 9999999999
Q ss_pred CCccccccccCCC
Q 043705 601 FPLGFHGFWDNNT 613 (614)
Q Consensus 601 vP~GfHG~w~~~~ 613 (614)
||+||||+|++++
T Consensus 525 VP~GfHG~fv~~~ 537 (545)
T PLN02491 525 VPYGFHAFFVTEE 537 (545)
T ss_pred CCCCccccCcCHH
Confidence 6999999999864
No 6
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-57 Score=499.67 Aligned_cols=452 Identities=26% Similarity=0.319 Sum_probs=328.1
Q ss_pred eeeeecCCCCCCCCceEEEecCCccccCCCCcccCCCccccEEEEEEeCCCCcEEEEEEEeccchhhhhcCCCCccce--
Q 043705 87 LHLVDGAIPSDFPSGTYYLTGPGLFTDDHGSTVHPLDGHGYLRAFEFDGVTGEVKYMAKYVKTDAQVEEHDPQTDTWR-- 164 (614)
Q Consensus 87 l~~v~G~IP~~L~~GtlyRnGPg~~~~~~~~~~H~FDGdGmv~~f~f~~~~g~v~y~~RyV~T~~~~~e~~~~~~~~~-- 164 (614)
++ +.|.||+|| +|+++|||||+++.+...++|||||.+++|+++|.+ |+++|++||++|+.|.....+.+....
T Consensus 37 ~~-~~g~ip~wL-~g~~lrn~pg~~~~g~~~~~h~fd~~~~~~~~~~~d--g~~~~~~~~~~s~~y~~~~~p~r~v~~~f 112 (582)
T KOG1285|consen 37 CT-VKGSIPKWL-DGTLLRNGPGLFTVGEEKYNHLFDGPALLHAFHFLD--GRVYYSSRYLESDPYKKTVDPNRIVSGEF 112 (582)
T ss_pred cc-cccccCccc-cccccCCCCcccccCcccccccccchhhhhheeecC--CeEEEEeeecccCCcccccccceeeeccc
Confidence 55 789999999 999999999999988777899999999999999996 789999999999999876555332210
Q ss_pred ee---ecC----CcccccCCcccCCcccccCcceeeeEEE-CCEEEEEeeCCCceeecCCCCceeeeeccCCC-CCcCCC
Q 043705 165 FT---HRG----PFSVLKGGKKFGNTKVMKNVANTSVLKW-GGKLLCLWEGGDPYEIESGTLDTIGQLQMMDG-GDSLGK 235 (614)
Q Consensus 165 ~~---~~g----~fs~~~~~~~~~n~~~~kn~ANT~V~~~-ggrLlAl~E~g~P~~lDp~TLeT~g~~~~~~~-~~~~~~ 235 (614)
+. .+. +|+.... ...|....+|+||+++.+. |+++||.+|....++||++||+|+..++|.+. +.
T Consensus 113 ~~~~~~pd~~~~~~s~~~~--~~~~g~~~rd~aN~~f~pv~g~~~~~gtet~~~~ki~~~tl~t~~~~~~~k~~v~---- 186 (582)
T KOG1285|consen 113 APVAEFPDPCKNIFSGFFP--EFRNGESIRDNANPNFTPVGGHHLYAGTETPHAVKIDPGTLETTYKVRFTKTLVQ---- 186 (582)
T ss_pred cccCCCCCccCcceeeeee--ecccccccccCCCcceeecCCCeeEecCCCceeEEecCcccceeEeeccccceee----
Confidence 00 011 1222111 1112345799999999999 89999999999999999999999999999762 21
Q ss_pred CCcchhhhhhhhccccccceeeeCCccccCCCcCCCCCCcEEE-EEeccccCCCCC--ccEEEEEEcCCCcEE-------
Q 043705 236 NSKDLWDVAAEMLKPILYGVFKMPPKRLLSHYKLDAPRNRLLT-VSCNAEDMLLPR--SNFTFYEFDSNFKLL------- 305 (614)
Q Consensus 236 ~~~~~~~~~~~~~~p~l~g~~~~p~~~~tAHpk~Dp~tg~l~~-~~~~~~~~~~~~--~~~~~~~~d~~g~~~------- 305 (614)
-..++||+..|+ .|++++ +++.. +++. ..+++.....+|.-.
T Consensus 187 ------------------------~~~~gah~~~d~-~G~~~g~~g~~~---~~~~~~r~~~~~~~p~~~~~~~~~~~v~ 238 (582)
T KOG1285|consen 187 ------------------------EHTAGAHPHPDE-IGTVYGHFGIAR---FGLFFARALTVLKNPANGVGLANAGLVW 238 (582)
T ss_pred ------------------------eeecccCCcccC-cccEEeeechhh---ccccccceeEEEecCCCccccccccceE
Confidence 124789999998 799998 55542 1221 123333333332211
Q ss_pred ------eeEEEeecccceeeeeeecCceEEEeecceeechhhhhhhhcC---CCcceecceeCCCCCCccEEEEeCCCCC
Q 043705 306 ------NKQEFNILDHLMIHDWAFTDTHYILFANRVKLDVLGSMTAVSG---LSPMISALSVNPSKPTSPVYLLPRFPNK 376 (614)
Q Consensus 306 ------~~~~~~~p~~~~iHdfa~Teny~V~~~~p~~~d~~~~~~~~~G---~~~~~~~l~~~p~~~t~~i~vipR~~~~ 376 (614)
....-..+.+.|||+|++||||+|++++|+++++..++..... +..+.++++|.|..... ++++++++.+
T Consensus 239 ~~~~~~a~~~dd~~~p~yvhs~G~tenyi~~~e~~~~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~~l~-~~~~~~~~~k 317 (582)
T KOG1285|consen 239 FHNRLLAYSEDDLPYPGYVHSFGDTENYIGRFEFPLRLNLSKFAHPKLDPVTGEWFADFYDWVPKPYLI-YHKFSKEGGK 317 (582)
T ss_pred eecceeeeccCCCccceEEeecCCccceEeEecCCcccchhhhccCcccccccchhhhhhcccCCCcEE-EEEeccccCc
Confidence 0111245788999999999999999999999999987665442 45677889999988775 8899988876
Q ss_pred CCCccceeeeEEeCCCceeeeeeceeeccCCCCCeEEEEEEeeeccCCccccccccc--ccCCCCCCccccccccccccc
Q 043705 377 SVGVRDWRVPVEAPSQMWLLHVGNAFELKDVDGNTEIQIHACSCSYEWFNFQNLFGY--NWQSGRLDPSIMNLKESEYQL 454 (614)
Q Consensus 377 ~~~~~~w~~~~~~~~~~f~fH~~NAyEe~d~~g~~~v~iv~d~~~y~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~ 454 (614)
.. . .+....++.|||.||||++ |+ +++|.|+|.+......... ...+.+. .. . ....+.
T Consensus 318 ~~---~----~~~~~~~~t~hh~na~eed---g~----vi~D~~~~~~~~~~~~~~~p~~~~~~k~-~r-f---g~~~k~ 378 (582)
T KOG1285|consen 318 SV---P----VEIFPSFPTFHHDNAFEED---GC----VVPDLCVYFDLSEMIRDTSPLLYDNGKT-LR-F---GLLSKT 378 (582)
T ss_pred cC---c----ceeccCcceEEEeeeeccc---Cc----eEEEEEEEechhhhhcccceeecccccc-cc-c---cccccc
Confidence 42 1 3332248999999999994 55 7889999876541110000 0000000 00 0 000111
Q ss_pred CC------------------------------------------------------eEEEEEEEccCCCceeEeeccccc
Q 043705 455 LP------------------------------------------------------HLVQVSISLDVDGNCQKCTVEPLN 480 (614)
Q Consensus 455 ~~------------------------------------------------------~L~R~~idl~~~g~~~~~~~~~l~ 480 (614)
++ +|...++++.+ +.+ ..+.+.
T Consensus 379 ~~d~~~~~~p~~~~~~~~~~~~~~e~~~~~~~~~v~~~~~s~~~~i~~~~de~~~~~l~e~r~~~~t-g~~---~~~~~~ 454 (582)
T KOG1285|consen 379 APDARRIVWPLSPSKFAFHLWNNWEKKPYDWEVVVIGSCMSSTSTIFRESDELLGNRLEEIRLNLKT-GLE---FPRPVI 454 (582)
T ss_pred CCcccceEEEeccccccccchhhhcccCCCceEEeecccCCccchhhcccccchhceeeeeeecccc-ccc---ccceee
Confidence 12 22223333221 110 011111
Q ss_pred ccCCCccCcccCCCCCCCccceEEEeeecCCcCCCCCCCCCeeEEEeccCCcEEEEEcCCCccccccEEeeC--CCCCCC
Q 043705 481 QWKKSSDFPIINPTYSGQKTTCIYAATSLGTRRALPHFPFDTVVKLNVLTKSVQTWSVGTRRFIGEPIFVPK--GVEEDD 558 (614)
Q Consensus 481 ~~~~~~EfP~in~~~~G~~yry~Y~~~~~~~~~~~~~~~~~~lvK~D~~~g~~~~w~~~~~~~~gEPvFVPr--~~~EDD 558 (614)
...++|+++||..|.||+|||+|++..++ ++.+++++|+|+.+|+...|..+.+++.|||+|||+ +.+|||
T Consensus 455 -~~~nl~~~~in~~~~Gkk~ryvY~ai~~~------~p~~~g~vKvDl~~g~~~~w~~~~~~~~GEP~FVP~p~~~eEDd 527 (582)
T KOG1285|consen 455 -PKINLDFGMINRSYLGKKYRYVYGAILDP------WPKVSGIVKVDLVTGEVKKWREGGGRPGGEPIFVPRPGTLEEDD 527 (582)
T ss_pred -cccccccccccceeecccceEEEEEecCC------ccCCCeEEEEEecCCceeeEecCCCccCCCceEecCCCCcccCC
Confidence 12488999999999999999999998753 356799999999999999999999999999999999 358999
Q ss_pred eEEEEEEEeCCCCeeEEEEEcCCCCCCCCceeEEEEcccccCCCccccccccCCC
Q 043705 559 GYLLVIEYAVSIQRCYLIILNPKKIGEGDALVARLEVPRHLNFPLGFHGFWDNNT 613 (614)
Q Consensus 559 G~LL~~v~d~~~~~s~L~VLDA~~l~eg~~pVAr~~lP~~~~vP~GfHG~w~~~~ 613 (614)
||+|++|++.+.++|+|+||||++|++ +||++||.+ +|+||||.|++.+
T Consensus 528 G~Iv~~v~~~~~~~s~l~ildAK~l~~----~ar~~vp~r--vP~gfHG~f~~~~ 576 (582)
T KOG1285|consen 528 GYIVSVVHDESKEKSFLLILDAKTLEE----VARVEVPTR--VPYGFHGTFVSTT 576 (582)
T ss_pred cEEEEEEEcCCCCcccEEEEeccccce----eeEEecCCC--CCCccceeEeccc
Confidence 999999999999999999999999986 999999997 7999999999864
No 7
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.76 E-value=3.7e-18 Score=189.28 Aligned_cols=280 Identities=21% Similarity=0.217 Sum_probs=203.0
Q ss_pred hccccCccccCCCeeeeeeecCCCCCCCCceEEEecCCccccCCCCcccCCCccccEEEEEEeCCCC--cEEEEEEEecc
Q 043705 72 FLFVSQRSETTAPITLHLVDGAIPSDFPSGTYYLTGPGLFTDDHGSTVHPLDGHGYLRAFEFDGVTG--EVKYMAKYVKT 149 (614)
Q Consensus 72 ~~f~~~~~E~~~~~~l~~v~G~IP~~L~~GtlyRnGPg~~~~~~~~~~H~FDGdGmv~~f~f~~~~g--~v~y~~RyV~T 149 (614)
+.|.++. |...+-.+ +++|.+|.-+ +|.+.|+|+++...+-+ -.|+|||+||+|+.+|+. | +++|..||.+|
T Consensus 110 ~~f~~~~-~~pd~~~~-~~s~~~~~~~-~g~~~rd~aN~~f~pv~-g~~~~~gtet~~~~ki~~--~tl~t~~~~~~~k~ 183 (582)
T KOG1285|consen 110 GEFAPVA-EFPDPCKN-IFSGFFPEFR-NGESIRDNANPNFTPVG-GHHLYAGTETPHAVKIDP--GTLETTYKVRFTKT 183 (582)
T ss_pred ccccccC-CCCCccCc-ceeeeeeecc-cccccccCCCcceeecC-CCeeEecCCCceeEEecC--cccceeEeeccccc
Confidence 6777776 75544344 5899999999 99999999998654321 269999999999999997 6 88999999998
Q ss_pred chhhhhcCCCCccc----eeeec--CC--cccccC-C-cccCCcccccCcceeeeEEECCEEEEEeeCCCceee---cCC
Q 043705 150 DAQVEEHDPQTDTW----RFTHR--GP--FSVLKG-G-KKFGNTKVMKNVANTSVLKWGGKLLCLWEGGDPYEI---ESG 216 (614)
Q Consensus 150 ~~~~~e~~~~~~~~----~~~~~--g~--fs~~~~-~-~~~~n~~~~kn~ANT~V~~~ggrLlAl~E~g~P~~l---Dp~ 216 (614)
|..|+..++... .-.+- |. |..... . ..+.|.......+|+..++.-++++|+.|++.||.+ .-.
T Consensus 184 --~v~~~~~gah~~~d~~G~~~g~~g~~~~~~~~~r~~~~~~~p~~~~~~~~~~~v~~~~~~~a~~~dd~~~p~yvhs~G 261 (582)
T KOG1285|consen 184 --LVQEHTAGAHPHPDEIGTVYGHFGIARFGLFFARALTVLKNPANGVGLANAGLVWFHNRLLAYSEDDLPYPGYVHSFG 261 (582)
T ss_pred --eeeeeecccCCcccCcccEEeeechhhccccccceeEEEecCCCccccccccceEeecceeeeccCCCccceEEeecC
Confidence 887765542110 00010 10 000000 0 001122334567899988888999999999987755 346
Q ss_pred CCce-eeeeccCCCCCcCCCCCcchhhhhhhhccccccceeeeCCccccCCCcCCCCCCcEEEEEeccccCCCCCccEEE
Q 043705 217 TLDT-IGQLQMMDGGDSLGKNSKDLWDVAAEMLKPILYGVFKMPPKRLLSHYKLDAPRNRLLTVSCNAEDMLLPRSNFTF 295 (614)
Q Consensus 217 TLeT-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~g~~~~p~~~~tAHpk~Dp~tg~l~~~~~~~~~~~~~~~~~~~ 295 (614)
.+|| |+.++|.+.+. ....||||+||.+|++++..|+.. +.+.+.|
T Consensus 262 ~tenyi~~~e~~~~l~-----------------------------~~~~a~pk~~~~~g~~~~~~yd~~----~~~~l~~ 308 (582)
T KOG1285|consen 262 DTENYIGRFEFPLRLN-----------------------------LSKFAHPKLDPVTGEWFADFYDWV----PKPYLIY 308 (582)
T ss_pred CccceEeEecCCcccc-----------------------------hhhhccCcccccccchhhhhhccc----CCCcEEE
Confidence 6899 99999976532 137899999999999999988763 5568999
Q ss_pred EEEcCCCcEEeeEEEeecccceeeeeeecCceEEEeecceeechhhhhhhhcCCCcceecceeCCCCCCccEEEEeCCCC
Q 043705 296 YEFDSNFKLLNKQEFNILDHLMIHDWAFTDTHYILFANRVKLDVLGSMTAVSGLSPMISALSVNPSKPTSPVYLLPRFPN 375 (614)
Q Consensus 296 ~~~d~~g~~~~~~~~~~p~~~~iHdfa~Teny~V~~~~p~~~d~~~~~~~~~G~~~~~~~l~~~p~~~t~~i~vipR~~~ 375 (614)
.+++..|+......+....+.|+|++|+|||+.|+++.++..+...+. .+..| +..+..+.. |+.+.++...
T Consensus 309 ~~~~~~~~k~~~~~~~~~~~t~hh~na~eedg~vi~D~~~~~~~~~~~---~~~~p----~~~~~~k~~-rfg~~~k~~~ 380 (582)
T KOG1285|consen 309 HKFSKEGGKSVPVEIFPSFPTFHHDNAFEEDGCVVPDLCVYFDLSEMI---RDTSP----LLYDNGKTL-RFGLLSKTAP 380 (582)
T ss_pred EEeccccCccCcceeccCcceEEEeeeecccCceEEEEEEEechhhhh---cccce----eeccccccc-ccccccccCC
Confidence 999998876665555555788999999999999999999999987432 23332 345566656 5999999876
Q ss_pred CCCCccceeeeEEeCCCceeeeeeceeecc
Q 043705 376 KSVGVRDWRVPVEAPSQMWLLHVGNAFELK 405 (614)
Q Consensus 376 ~~~~~~~w~~~~~~~~~~f~fH~~NAyEe~ 405 (614)
+.. ...| .+.++ +++||+.|+||+.
T Consensus 381 d~~-~~~~---p~~~~-~~~~~~~~~~e~~ 405 (582)
T KOG1285|consen 381 DAR-RIVW---PLSPS-KFAFHLWNNWEKK 405 (582)
T ss_pred ccc-ceEE---Eeccc-cccccchhhhccc
Confidence 653 5566 55554 8999999999974
No 8
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=57.91 E-value=7.1 Score=38.93 Aligned_cols=37 Identities=19% Similarity=0.385 Sum_probs=32.5
Q ss_pred eeEEECCEEEEEe-eCCCceeecCCCCceeeeeccCCC
Q 043705 193 SVLKWGGKLLCLW-EGGDPYEIESGTLDTIGQLQMMDG 229 (614)
Q Consensus 193 ~V~~~ggrLlAl~-E~g~P~~lDp~TLeT~g~~~~~~~ 229 (614)
.+..+|+.+|+|+ -.|.-+..|++||+++|.+.|.|.
T Consensus 95 Git~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge 132 (262)
T COG3823 95 GITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE 132 (262)
T ss_pred ceeeccceEEEEEeccceeEEEChHHhhhhcccccCCc
Confidence 4677899999876 788999999999999999999774
No 9
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=57.57 E-value=8.9 Score=27.23 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=20.1
Q ss_pred ceeeeEEECCEEEEEeeCCCceeecCCC
Q 043705 190 ANTSVLKWGGKLLCLWEGGDPYEIESGT 217 (614)
Q Consensus 190 ANT~V~~~ggrLlAl~E~g~P~~lDp~T 217 (614)
.+.++...+|++|+.++.|.-|.||++|
T Consensus 13 ~~~~~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 13 IWSSPAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp --S--EECTSEEEEE-TTSEEEEEETT-
T ss_pred cCcCCEEECCEEEEEcCCCEEEEEeCCC
Confidence 3455677899999999999999999976
No 10
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=54.37 E-value=67 Score=34.24 Aligned_cols=94 Identities=16% Similarity=0.220 Sum_probs=58.4
Q ss_pred CCEEEEEeeCC------CceeecCC--CCceeeeeccCCCCCcCCCCCcchhhhhhhhccccccceeeeCCccccCCCcC
Q 043705 198 GGKLLCLWEGG------DPYEIESG--TLDTIGQLQMMDGGDSLGKNSKDLWDVAAEMLKPILYGVFKMPPKRLLSHYKL 269 (614)
Q Consensus 198 ggrLlAl~E~g------~P~~lDp~--TLeT~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~g~~~~p~~~~tAHpk~ 269 (614)
+..|||..|.+ .-|.+|++ +|+-++...-.|. ...|-.+
T Consensus 48 ~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~---------------------------------~p~~i~~ 94 (345)
T PF10282_consen 48 GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS---------------------------------SPCHIAV 94 (345)
T ss_dssp SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS---------------------------------CEEEEEE
T ss_pred CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC---------------------------------CcEEEEE
Confidence 57788888852 35677775 6666665543221 2235567
Q ss_pred CCCCCcEEEEEeccccCCCCCccEEEEEEcCCCcEEeeEE-Eee----c-----ccceeeeeeecCc--eEEEe
Q 043705 270 DAPRNRLLTVSCNAEDMLLPRSNFTFYEFDSNFKLLNKQE-FNI----L-----DHLMIHDWAFTDT--HYILF 331 (614)
Q Consensus 270 Dp~tg~l~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-~~~----p-----~~~~iHdfa~Ten--y~V~~ 331 (614)
|+....++..+|.. +.+.+|.++.+|++..... +.. | ..+..|...++.+ |+++.
T Consensus 95 ~~~g~~l~vany~~-------g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 95 DPDGRFLYVANYGG-------GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp CTTSSEEEEEETTT-------TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred ecCCCEEEEEEccC-------CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 88777777666643 4699999999998776532 211 1 2357788888743 55443
No 11
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=45.47 E-value=1.2e+02 Score=32.91 Aligned_cols=75 Identities=21% Similarity=0.318 Sum_probs=45.6
Q ss_pred CCccceEEEeeecCCcCCCCCCCCCeeEEEeccCCcEE-EEEcCCCccccccEEeeCCCCCCCeEEEEEEEeCCCCeeEE
Q 043705 497 GQKTTCIYAATSLGTRRALPHFPFDTVVKLNVLTKSVQ-TWSVGTRRFIGEPIFVPKGVEEDDGYLLVIEYAVSIQRCYL 575 (614)
Q Consensus 497 G~~yry~Y~~~~~~~~~~~~~~~~~~lvK~D~~~g~~~-~w~~~~~~~~gEPvFVPr~~~EDDG~LL~~v~d~~~~~s~L 575 (614)
...-||+|.++.+ ..|.++|+.+++.. +...+ .+|.=|.=+ .|.-||++.-+.. ..+
T Consensus 45 s~Dgr~~yv~~rd-----------g~vsviD~~~~~~v~~i~~G-----~~~~~i~~s--~DG~~~~v~n~~~----~~v 102 (369)
T PF02239_consen 45 SPDGRYLYVANRD-----------GTVSVIDLATGKVVATIKVG-----GNPRGIAVS--PDGKYVYVANYEP----GTV 102 (369)
T ss_dssp TT-SSEEEEEETT-----------SEEEEEETTSSSEEEEEE-S-----SEEEEEEE----TTTEEEEEEEET----TEE
T ss_pred cCCCCEEEEEcCC-----------CeEEEEECCcccEEEEEecC-----CCcceEEEc--CCCCEEEEEecCC----Cce
Confidence 3446789987532 37999999999853 44433 344333322 3455887776654 489
Q ss_pred EEEcCCCCCCCCceeEEEEccc
Q 043705 576 IILNPKKIGEGDALVARLEVPR 597 (614)
Q Consensus 576 ~VLDA~~l~eg~~pVAr~~lP~ 597 (614)
.|||+++++ +|.++....
T Consensus 103 ~v~D~~tle----~v~~I~~~~ 120 (369)
T PF02239_consen 103 SVIDAETLE----PVKTIPTGG 120 (369)
T ss_dssp EEEETTT------EEEEEE--E
T ss_pred eEecccccc----ceeeccccc
Confidence 999999997 688877653
No 12
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=38.68 E-value=80 Score=34.41 Aligned_cols=66 Identities=15% Similarity=0.346 Sum_probs=43.7
Q ss_pred cceeeeEEECCEEEEEeeCCCceeecCCCCce-eeeeccCCCCCcCCCCCcchhhhhhhhccccccceeeeCCccccCCC
Q 043705 189 VANTSVLKWGGKLLCLWEGGDPYEIESGTLDT-IGQLQMMDGGDSLGKNSKDLWDVAAEMLKPILYGVFKMPPKRLLSHY 267 (614)
Q Consensus 189 ~ANT~V~~~ggrLlAl~E~g~P~~lDp~TLeT-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~g~~~~p~~~~tAHp 267 (614)
.+-|..-++.+|.+||| ||+.|++ ++..+++.+ .|++ | |
T Consensus 230 i~tTGfsr~seRq~aLw--------dp~nl~eP~~~~elDtS-----------------------nGvl-~--------P 269 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALW--------DPNNLEEPIALQELDTS-----------------------NGVL-L--------P 269 (472)
T ss_pred eeeeccccccccceecc--------CcccccCcceeEEeccC-----------------------CceE-E--------e
Confidence 56777788889999998 5555554 344455432 1221 1 4
Q ss_pred cCCCCCCcEEEEEeccccCCCCCccEEEEEEcCC
Q 043705 268 KLDAPRNRLLTVSCNAEDMLLPRSNFTFYEFDSN 301 (614)
Q Consensus 268 k~Dp~tg~l~~~~~~~~~~~~~~~~~~~~~~d~~ 301 (614)
-+|+.|+-+|.+|=. .+.++|||+..+
T Consensus 270 FyD~dt~ivYl~GKG-------D~~IRYyEit~d 296 (472)
T KOG0303|consen 270 FYDPDTSIVYLCGKG-------DSSIRYFEITNE 296 (472)
T ss_pred eecCCCCEEEEEecC-------CcceEEEEecCC
Confidence 489999998887632 356889998665
No 13
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=30.24 E-value=3.6e+02 Score=29.08 Aligned_cols=72 Identities=13% Similarity=0.171 Sum_probs=46.1
Q ss_pred EECCEEEEEeeCC-----CceeecCC--CCceeeeeccCCCCCcCCCCCcchhhhhhhhccccccceeeeCCccccCCCc
Q 043705 196 KWGGKLLCLWEGG-----DPYEIESG--TLDTIGQLQMMDGGDSLGKNSKDLWDVAAEMLKPILYGVFKMPPKRLLSHYK 268 (614)
Q Consensus 196 ~~ggrLlAl~E~g-----~P~~lDp~--TLeT~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~g~~~~p~~~~tAHpk 268 (614)
+.+..||+.-|.| .-|+||++ +|+-+++....|. -..|=.
T Consensus 49 ~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~---------------------------------~p~yvs 95 (346)
T COG2706 49 PDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS---------------------------------PPCYVS 95 (346)
T ss_pred CCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC---------------------------------CCeEEE
Confidence 3345788877542 48899994 7777776555432 124455
Q ss_pred CCCCCCcEEEEEeccccCCCCCccEEEEEEcCCCcEEee
Q 043705 269 LDAPRNRLLTVSCNAEDMLLPRSNFTFYEFDSNFKLLNK 307 (614)
Q Consensus 269 ~Dp~tg~l~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~ 307 (614)
+|+...-++.-+|.. +.+.+|.+.++|.+...
T Consensus 96 vd~~g~~vf~AnY~~-------g~v~v~p~~~dG~l~~~ 127 (346)
T COG2706 96 VDEDGRFVFVANYHS-------GSVSVYPLQADGSLQPV 127 (346)
T ss_pred ECCCCCEEEEEEccC-------ceEEEEEcccCCccccc
Confidence 677444444455553 46899999999987654
No 14
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=24.37 E-value=64 Score=23.47 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=22.6
Q ss_pred EEeeCCCCCCCeEEEEEEEeCCCCeeEEEEEcCC
Q 043705 548 IFVPKGVEEDDGYLLVIEYAVSIQRCYLIILNPK 581 (614)
Q Consensus 548 vFVPr~~~EDDG~LL~~v~d~~~~~s~L~VLDA~ 581 (614)
++||. +.+||+++-+.....+...+...|.+
T Consensus 4 vWvpD---~~egfv~g~I~~~~g~~vtV~~~~G~ 34 (42)
T PF02736_consen 4 VWVPD---PKEGFVKGEIIEEEGDKVTVKTEDGK 34 (42)
T ss_dssp EEEEE---SSSSEEEEEEEEEESSEEEEEETTTE
T ss_pred EEEeC---CcccEEEEEEEEEcCCEEEEEECCCC
Confidence 67775 46799999998777777666666643
No 15
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=22.71 E-value=1.2e+02 Score=20.90 Aligned_cols=28 Identities=14% Similarity=0.280 Sum_probs=20.5
Q ss_pred CeeEEEEEcCCCCCCCCceeEEEEcccccCCCccc
Q 043705 571 QRCYLIILNPKKIGEGDALVARLEVPRHLNFPLGF 605 (614)
Q Consensus 571 ~~s~L~VLDA~~l~eg~~pVAr~~lP~~~~vP~Gf 605 (614)
....+.|||+.+.+ .+.++.+... |.++
T Consensus 12 ~~~~v~~id~~~~~----~~~~i~vg~~---P~~i 39 (42)
T TIGR02276 12 GSNTVSVIDTATNK----VIATIPVGGY---PFGV 39 (42)
T ss_pred CCCEEEEEECCCCe----EEEEEECCCC---CceE
Confidence 34588899998775 5899888653 7654
No 16
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=21.20 E-value=4.9e+02 Score=25.64 Aligned_cols=68 Identities=18% Similarity=0.309 Sum_probs=40.2
Q ss_pred CeeEEEeccCCcEEEEEcCCCccccccEEeeCCCCCCCeEEEEEEEeCCCCeeEEEEEcCCCCCCCCceeEEEEcccccC
Q 043705 521 DTVVKLNVLTKSVQTWSVGTRRFIGEPIFVPKGVEEDDGYLLVIEYAVSIQRCYLIILNPKKIGEGDALVARLEVPRHLN 600 (614)
Q Consensus 521 ~~lvK~D~~~g~~~~w~~~~~~~~gEPvFVPr~~~EDDG~LL~~v~d~~~~~s~L~VLDA~~l~eg~~pVAr~~lP~~~~ 600 (614)
+.|..+|+.+++...... .+..+....|-|. ..+|++.. .....|.|+|.++.+ ++.++.+...
T Consensus 229 ~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~-----g~~l~~~~----~~~~~i~v~d~~~~~----~~~~~~~~~~-- 292 (300)
T TIGR03866 229 NRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPD-----EKYLLTTN----GVSNDVSVIDVAALK----VIKSIKVGRL-- 292 (300)
T ss_pred CeEEEEECCCCcEEEEEE-eCCCcceEEECCC-----CCEEEEEc----CCCCeEEEEECCCCc----EEEEEEcccc--
Confidence 568888998887654322 1222223334443 22443322 233579999999876 5899888754
Q ss_pred CCccc
Q 043705 601 FPLGF 605 (614)
Q Consensus 601 vP~Gf 605 (614)
|+++
T Consensus 293 -~~~~ 296 (300)
T TIGR03866 293 -PWGV 296 (300)
T ss_pred -ccee
Confidence 7654
Done!