Query 043705
Match_columns 614
No_of_seqs 149 out of 1086
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 12:50:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043705.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043705hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2biw_A Apocarotenoid-cleaving 100.0 3E-107 1E-111 899.8 44.0 463 67-612 17-490 (490)
2 3npe_A 9-CIS-epoxycarotenoid d 100.0 1E-102 5E-107 867.8 42.4 453 65-612 43-521 (529)
3 3kvc_A Retinoid isomerohydrola 100.0 2E-102 7E-107 869.5 34.5 475 67-612 9-533 (533)
4 3mbr_X Glutamine cyclotransfer 31.1 1.2E+02 0.004 29.6 7.7 23 571-597 122-144 (243)
5 3nol_A Glutamine cyclotransfer 23.2 1.9E+02 0.0064 28.5 7.6 20 521-540 65-85 (262)
6 3nol_A Glutamine cyclotransfer 22.7 73 0.0025 31.5 4.4 35 194-228 92-127 (262)
7 4guc_A Protein BA_2500; virule 20.8 2.3E+02 0.0078 24.6 6.5 52 270-331 33-88 (120)
8 3mbr_X Glutamine cyclotransfer 18.3 1.1E+02 0.0038 29.8 4.7 36 193-228 69-105 (243)
9 3nok_A Glutaminyl cyclase; bet 18.2 81 0.0028 31.3 3.6 34 194-227 101-135 (268)
10 3c75_H MADH, methylamine dehyd 14.5 2.4E+02 0.0083 29.6 6.5 78 501-596 85-168 (426)
No 1
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*
Probab=100.00 E-value=3.4e-107 Score=899.81 Aligned_cols=463 Identities=29% Similarity=0.482 Sum_probs=386.8
Q ss_pred ccchhhccccCccccCCCeeeeeeecCCCCCCCCceEEEecCCccccCCCCcccCCCccccEEEEEE-eCCCCcEEEEEE
Q 043705 67 FWDYQFLFVSQRSETTAPITLHLVDGAIPSDFPSGTYYLTGPGLFTDDHGSTVHPLDGHGYLRAFEF-DGVTGEVKYMAK 145 (614)
Q Consensus 67 ~~d~~~~f~~~~~E~~~~~~l~~v~G~IP~~L~~GtlyRnGPg~~~~~~~~~~H~FDGdGmv~~f~f-~~~~g~v~y~~R 145 (614)
-.+|+++|+++.+|. + ..|.+|+|+||+|| +|+|||||||+++.++.++.||||||||||+|+| ++ |+|+|+||
T Consensus 17 ~~~~~~~f~~~~~E~-~-~~l~~V~G~IP~~L-~Gt~~RnGP~~~~~~~~~~~H~FDGdGmlh~~~f~~~--G~v~y~~R 91 (490)
T 2biw_A 17 PQDWLRGYQSQPQEW-D-YWVEDVEGSIPPDL-QGTLYRNGPGLLEIGDRPLKHPFDGDGMVTAFKFPGD--GRVHFQSK 91 (490)
T ss_dssp HHHHHHTTSCCCSCE-E-EECCCEEECCCTTC-CEEEEECCBCCSEETTEECSSGGGSCBEEEEEEECSS--SCCEEEEE
T ss_pred ccchhhhccCccccC-C-cccceEEeCCCCCC-CeEEEEeCCCcCcCCCCcccCccCCCCeEEEEEECCC--CEEEEEcc
Confidence 457999999999896 3 35776899999999 9999999999998876678899999999999999 75 89999999
Q ss_pred EeccchhhhhcCCCCccceeeecCCcccccCCcccCCc--ccccCcceeeeEEECCEEEEEeeCCCceeecCCCCceeee
Q 043705 146 YVKTDAQVEEHDPQTDTWRFTHRGPFSVLKGGKKFGNT--KVMKNVANTSVLKWGGKLLCLWEGGDPYEIESGTLDTIGQ 223 (614)
Q Consensus 146 yV~T~~~~~e~~~~~~~~~~~~~g~fs~~~~~~~~~n~--~~~kn~ANT~V~~~ggrLlAl~E~g~P~~lDp~TLeT~g~ 223 (614)
||||++|++|+++++ .++++.|+....+....|. ...+|+|||||++|+||||||||+|.||+|||.||||+|.
T Consensus 92 ~v~T~~~~~e~~ag~----~~~~~~fg~~~~~~~~~~~~~~~~~~~aNT~v~~~~g~llAl~E~~~p~~ldp~tLeT~G~ 167 (490)
T 2biw_A 92 FVRTQGYVEEQKAGK----MIYRGVFGSQPAGGWLKTIFDLRLKNIANTNITYWGDRLLALWEGGQPHRLEPSNLATIGL 167 (490)
T ss_dssp ECCCHHHHHHHHHTS----CCSBCTTSCCCSSTHHHHTTCCCBCCCCCSEEEEETTEEEEECTTSCCEEECTTTCCEEEE
T ss_pred eEeCHHHHHHHHhCC----cccccccccCCCCchhhhhcccccCCCCEEEEEEECCEEEEEEcCCCCEecccccccEeee
Confidence 999999999988764 3445556554432222221 1268999999999999999999999999999999999999
Q ss_pred eccCCCCCcCCCCCcchhhhhhhhccccccceeeeCCccccCCCcCCCC------CCcEEEEEeccccCCCCCccEEEEE
Q 043705 224 LQMMDGGDSLGKNSKDLWDVAAEMLKPILYGVFKMPPKRLLSHYKLDAP------RNRLLTVSCNAEDMLLPRSNFTFYE 297 (614)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~g~~~~p~~~~tAHpk~Dp~------tg~l~~~~~~~~~~~~~~~~~~~~~ 297 (614)
++|+|.+. +...+|||||+||. ||||++|+++. ++...+++|+
T Consensus 168 ~d~~g~l~---------------------------~~~~~tAHPk~Dp~~~~~~gtgel~~fg~~~----~~~~~~~~~~ 216 (490)
T 2biw_A 168 DDLGGILA---------------------------EGQPLSAHPRIDPASTFDGGQPCYVTFSIKS----SLSSTLTLLE 216 (490)
T ss_dssp CCTTTTSC---------------------------TTCCCCSCCEEESSCTTTTTCCEEEEEEEEE----SSEEEEEEEE
T ss_pred eccCCccc---------------------------CCcccccCceECccccccCCCCeEEEEEecC----CCCcEEEEEE
Confidence 99987531 11259999999999 99999999986 3456699999
Q ss_pred EcCCCcEEeeEEEeecccceeeeeeecCceEEEeecceeechhhhhhhhcCCCcceecceeCCCCCCccEEEEeCCCCCC
Q 043705 298 FDSNFKLLNKQEFNILDHLMIHDWAFTDTHYILFANRVKLDVLGSMTAVSGLSPMISALSVNPSKPTSPVYLLPRFPNKS 377 (614)
Q Consensus 298 ~d~~g~~~~~~~~~~p~~~~iHdfa~Teny~V~~~~p~~~d~~~~~~~~~G~~~~~~~l~~~p~~~t~~i~vipR~~~~~ 377 (614)
+|++|++.+..++++|.++|||||+|||||+||+++|+++|+.+++ .|.+++.++++|+|+++++ |+||||+ +.
T Consensus 217 ~~~~G~~~~~~~~~~~~~~~~HDfaiTeny~V~~~~P~~~~~~~~~---~g~~~~~~~~~~~p~~~tr-~~VipR~-~~- 290 (490)
T 2biw_A 217 LDPQGKLLRQKTETFPGFAFIHDFAITPHYAIFLQNNVTLNGLPYL---FGLRGAGECVQFHPDKPAQ-IILVPRD-GG- 290 (490)
T ss_dssp ECTTSCEEEEEEEEEESCCCCCCCEECSSEEEEEECCEEECCHHHH---TTSSCGGGGEEECTTSCEE-EEEEETT-SC-
T ss_pred ECCCCCEEeeEEEeCCCCceEeeeeccCCEEEEEeCCeEEcHHHHh---hccCCccceeEeCCCCCcE-EEEEECC-CC-
Confidence 9999999999999999999999999999999999999999988754 4666788999999999995 9999999 43
Q ss_pred CCccceeeeEEeCCCceeeeeeceeeccCCCCCeEEEEEEeeeccCCcccccccccccCCCCCCcccccccccccccCCe
Q 043705 378 VGVRDWRVPVEAPSQMWLLHVGNAFELKDVDGNTEIQIHACSCSYEWFNFQNLFGYNWQSGRLDPSIMNLKESEYQLLPH 457 (614)
Q Consensus 378 ~~~~~w~~~~~~~~~~f~fH~~NAyEe~d~~g~~~v~iv~d~~~y~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 457 (614)
.++| |+++ +||+||++||||++ | +|++|.|+|++..+... . ..+... .......++
T Consensus 291 --~v~~---f~~~-~~f~fH~~NA~Ee~---~----~Iv~d~~~~~~~~~~~~-------~---~~~~~~-~~~~~~~~~ 346 (490)
T 2biw_A 291 --EIKR---IPVQ-AGFVFHHANAFEEN---G----KIILDSICYNSLPQVDT-------D---GDFRST-NFDNLDPGQ 346 (490)
T ss_dssp --CCEE---EEEC-CCEEEEEEEEEEET---T----EEEEEEEEESCCCCCCT-------T---CCGGGC-CGGGSCCCE
T ss_pred --ccEE---EecC-CCeEEecccceecC---C----eEEEEEeccCCcccccc-------c---cccccc-ccccCCCce
Confidence 3678 9998 59999999999983 3 38889999987653110 0 011110 011224579
Q ss_pred EEEEEEEccCCCceeEeecccccccCCCccCcccCCCCCCCccceEEEeeecCCcCCCCCCCCCeeEEEeccCCcEEEEE
Q 043705 458 LVQVSISLDVDGNCQKCTVEPLNQWKKSSDFPIINPTYSGQKTTCIYAATSLGTRRALPHFPFDTVVKLNVLTKSVQTWS 537 (614)
Q Consensus 458 L~R~~idl~~~g~~~~~~~~~l~~~~~~~EfP~in~~~~G~~yry~Y~~~~~~~~~~~~~~~~~~lvK~D~~~g~~~~w~ 537 (614)
|+||+|||++ +.+. .+.|. +.++|||+||++|.||+|||+|+++.+.. ..+..+++|+|+|+++|+.+.|+
T Consensus 347 l~R~~i~l~~-g~v~---~~~l~--~~~~EfP~In~~~~G~~~Ry~Y~~~~~~~---~~~~~~~~l~K~D~~tg~~~~~~ 417 (490)
T 2biw_A 347 LWRFTIDPAA-ATVE---KQLMV--SRCCEFPVVHPQQVGRPYRYVYMGAAHHS---TGNAPLQAILKVDLESGTETLRS 417 (490)
T ss_dssp EEEEEEETTT-TEEE---EEEEE--CSCEEEEECCGGGTTSCCSEEEEEECSSS---SSCCCCCEEEEEETTTTEEEEEE
T ss_pred EEEEEEECCC-CceE---EEecc--CCcccccccChhhCCceeeeEEEEeecCC---CCCCCCCeEEEEECCCCCEEEEE
Confidence 9999999986 4432 24454 67899999999999999999999976421 12346899999999999999999
Q ss_pred cCCCccccccEEeeC--CCCCCCeEEEEEEEeCCCCeeEEEEEcCCCCCCCCceeEEEEcccccCCCccccccccCC
Q 043705 538 VGTRRFIGEPIFVPK--GVEEDDGYLLVIEYAVSIQRCYLIILNPKKIGEGDALVARLEVPRHLNFPLGFHGFWDNN 612 (614)
Q Consensus 538 ~~~~~~~gEPvFVPr--~~~EDDG~LL~~v~d~~~~~s~L~VLDA~~l~eg~~pVAr~~lP~~~~vP~GfHG~w~~~ 612 (614)
+++++|+|||||||| +.+|||||||++|+|..+++|+|+||||++|++| ||||++||++ ||+||||+|+++
T Consensus 418 ~g~g~~~~EPvFVPrp~~~~EDDG~ll~~V~d~~~~~S~l~IlDA~~~~~~--pvArv~lP~r--vP~GfHG~wv~~ 490 (490)
T 2biw_A 418 FAPHGFAGEPIFVPRPGGVAEDDGWLLCLIYKADLHRSELVILDAQDITAP--AIATLKLKHH--IPYPLHGSWAQT 490 (490)
T ss_dssp CTTTEECCCCEEEECTTCCSTTCEEEEEEEEETTTTEEEEEEEETTCTTSC--CSEEEECSSC--CCCCCCEEEEEC
T ss_pred CCCCccccCCEEecCCCCCCCCCcEEEEEEEeCCCCceeEEEEccCCCCcC--ceEEEeCCCc--CCCCccccccCC
Confidence 999999999999999 4689999999999999999999999999999984 8999999998 699999999864
No 2
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}
Probab=100.00 E-value=1.4e-102 Score=867.78 Aligned_cols=453 Identities=22% Similarity=0.361 Sum_probs=368.7
Q ss_pred ccccchhhccccCccccCCCeeeeeeecCCCCCCCCceEEEecCCccccCCCCcccCCCccccEEEEEEeCCCCcE-EEE
Q 043705 65 AAFWDYQFLFVSQRSETTAPITLHLVDGAIPSDFPSGTYYLTGPGLFTDDHGSTVHPLDGHGYLRAFEFDGVTGEV-KYM 143 (614)
Q Consensus 65 ~~~~d~~~~f~~~~~E~~~~~~l~~v~G~IP~~L~~GtlyRnGPg~~~~~~~~~~H~FDGdGmv~~f~f~~~~g~v-~y~ 143 (614)
+....++++|+|+++| .++..|+ |+|+||+|| +|||||||||+...+ ...+||||||||||+|+|++ |+| +|+
T Consensus 43 ~~~~~l~g~fapv~ee-~~~~~l~-V~G~IP~~L-~Gt~~RNGpnP~f~~-~~~~HwFDGdGmlh~~~f~~--G~a~~y~ 116 (529)
T 3npe_A 43 DPAVQIAGNFAPVGER-PPVHELP-VSGRIPPFI-DGVYARNGANPCFDP-VAGHHLFDGDGMVHALRIRN--GAAESYA 116 (529)
T ss_dssp CHHHHTSGGGSCCCCE-EEEESCC-EEECCCTTC-EEEEEECCBCCSSCC-SSCCCGGGSCBEEEEEEEET--TEEEEEE
T ss_pred CccchhccCccccccc-CCcccce-EeecCCccC-CceEEEecCCcCcCC-cCCCccCCCCceEEEEEECC--CccceEE
Confidence 4444567999999877 4566787 899999999 999999999863322 34589999999999999996 899 999
Q ss_pred EEEeccchhhhhcCCCCccceeeecCCcccccCCc------------ccC--CcccccCcceeeeEEECCEEEEEeeCCC
Q 043705 144 AKYVKTDAQVEEHDPQTDTWRFTHRGPFSVLKGGK------------KFG--NTKVMKNVANTSVLKWGGKLLCLWEGGD 209 (614)
Q Consensus 144 ~RyV~T~~~~~e~~~~~~~~~~~~~g~fs~~~~~~------------~~~--n~~~~kn~ANT~V~~~ggrLlAl~E~g~ 209 (614)
||||||++|++|+++++. +++++++.+++.. ..+ +....+|+|||||++|+||||||||+|.
T Consensus 117 nRfVrT~~~~~e~~agr~----~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ANtnvv~~~g~llAl~E~g~ 192 (529)
T 3npe_A 117 CRFTETARLRQERAIGRP----VFPKAIGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDL 192 (529)
T ss_dssp EEECCCHHHHHHHHHTSC----CSCCTTTTTTSSTHHHHHHHHHHHHHTTSCCGGGCCCCCCSCEEEETTEEEECCTTSC
T ss_pred EeEecCHHHHHHHHcCCc----ccccccccccccchhhhhhhhhhhcccccccccccCCCCeEEEEEECCEEEEEEcCCC
Confidence 999999999999887643 4556555443210 011 1112468999999999999999999999
Q ss_pred ceee--cCC-CCceeeeeccCCCCCcCCCCCcchhhhhhhhccccccceeeeCCccccCCCcCCCCCCcEEEEEeccccC
Q 043705 210 PYEI--ESG-TLDTIGQLQMMDGGDSLGKNSKDLWDVAAEMLKPILYGVFKMPPKRLLSHYKLDAPRNRLLTVSCNAEDM 286 (614)
Q Consensus 210 P~~l--Dp~-TLeT~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~g~~~~p~~~~tAHpk~Dp~tg~l~~~~~~~~~~ 286 (614)
||+| ||+ ||||+|+++|+|.+. ..||||||+||.||||++|+|+.
T Consensus 193 Py~~~idp~~tLeT~G~~d~~g~l~-----------------------------~~~tAHPk~Dp~TGel~~f~y~~--- 240 (529)
T 3npe_A 193 PYHVRVADDGDLETVGRYDFDGQLG-----------------------------CAMIAHPKLDPATGELHALSYDV--- 240 (529)
T ss_dssp CEEEEECTTSCEEEEEECCGGGCCC-----------------------------SCCCSCCEECTTTCCEEEEECCS---
T ss_pred ceEEecCCCCCcceeeeeccCCccC-----------------------------CcccccCcCCCCCCcEEEEEeec---
Confidence 9988 895 999999999987531 14899999999999999999986
Q ss_pred CCCCccEEEEEEcCCCcEEeeEEEeecccceeeeeeecCceEEEeecceeechhhhhhhhcCCCcceecceeCCCCCCcc
Q 043705 287 LLPRSNFTFYEFDSNFKLLNKQEFNILDHLMIHDWAFTDTHYILFANRVKLDVLGSMTAVSGLSPMISALSVNPSKPTSP 366 (614)
Q Consensus 287 ~~~~~~~~~~~~d~~g~~~~~~~~~~p~~~~iHdfa~Teny~V~~~~p~~~d~~~~~~~~~G~~~~~~~l~~~p~~~t~~ 366 (614)
+..+.+++|++|++|++.+.+++++|.++|||||+|||||+||+++|+++|+.+++ .|. .++.|+|+++++
T Consensus 241 -~~~p~~~~~~~~~~G~~~~~~~i~~~~p~~~HDFaiTenyvVf~~~Pl~~~~~~~~---~g~----~~~~~~p~~~tr- 311 (529)
T 3npe_A 241 -IKRPYLKYFYFRPDGTKSDDVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEML---RGG----SPVVLDAAKTSR- 311 (529)
T ss_dssp -SSSCCCEEEEECTTCCBCCCEECCCSSCBCCCCCEECSSEEEEEECSEEECGGGGT---TTC----CSEEECTTSCCE-
T ss_pred -CCCCcEEEEEECCCCCEEEEEEEeCCCCceEeeEEecCCeEEEEeCCeEEcHHHHh---CCC----CceEECCCCCcE-
Confidence 34578999999999999999999999999999999999999999999999998754 453 568999999995
Q ss_pred EEEEeCCCCCCCCccceeeeEEeCCCceeeeeeceeeccCCCCCeEEEEEEeeeccCCcccccccccccCCCCCCccccc
Q 043705 367 VYLLPRFPNKSVGVRDWRVPVEAPSQMWLLHVGNAFELKDVDGNTEIQIHACSCSYEWFNFQNLFGYNWQSGRLDPSIMN 446 (614)
Q Consensus 367 i~vipR~~~~~~~~~~w~~~~~~~~~~f~fH~~NAyEe~d~~g~~~v~iv~d~~~y~~~~~~~~~~~~~~~~~~~p~~~~ 446 (614)
|+||||++++.. .++| |+++ +||+||++||||+++ +|+ |+++.|++.+.+. .|..
T Consensus 312 ~~VipR~~~~~~-~vrw---~e~~-~~f~fH~~NA~Ee~~-~~~----ivv~~~~~~~~~~--~~~~------------- 366 (529)
T 3npe_A 312 FGVLPKHAADAS-EMAW---VDVP-DCFCFHLWNAWEDEA-TGE----VVVIGSCMTPADS--IFNE------------- 366 (529)
T ss_dssp EEEEETTCSSGG-GCEE---EECT-TCEEEEEEEEEEETT-TTE----EEEEEEEECCCCC--SCCS-------------
T ss_pred EEEEECCCCCCC-ceEE---EEcC-CEEEEEecccEecCC-CCe----EEEEEecccCchh--hhhc-------------
Confidence 999999986543 5789 9998 599999999999854 243 4444565532211 1100
Q ss_pred ccccccccCCeEEEEEEEccCCCceeEeeccccc--ccCCCccCcccCCCCCCCccceEEEeeecCCcCCCCCCCCCeeE
Q 043705 447 LKESEYQLLPHLVQVSISLDVDGNCQKCTVEPLN--QWKKSSDFPIINPTYSGQKTTCIYAATSLGTRRALPHFPFDTVV 524 (614)
Q Consensus 447 ~~~~~~~~~~~L~R~~idl~~~g~~~~~~~~~l~--~~~~~~EfP~in~~~~G~~yry~Y~~~~~~~~~~~~~~~~~~lv 524 (614)
......++|+||+||+.++..++ +.+. ..+.++|||+||++|.||+|||+|+++..+ ...+++|+
T Consensus 367 ---~~~~~~~~l~r~rl~l~~g~~~~----~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~~------~~~~~~l~ 433 (529)
T 3npe_A 367 ---SDERLESVLTEIRLDARTGRSTR----RAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEP------WPKVSGFA 433 (529)
T ss_dssp ---SSSCCCCEEEEEEECTTTCCEEE----EESSCSSSCCCEEEEEECGGGTTSCCSEEEEEECCS------TTSCCEEE
T ss_pred ---cchhhccceEEEEEcCCCCCEEe----EEecccccCccccCceEChhHcCCccceEEEeccCC------CCCcceEE
Confidence 01124568999999997643322 2232 013689999999999999999999998643 23579999
Q ss_pred EEeccCCcEEEEEcCCCccccccEEeeCCC------CCCCeEEEEEEEeCCCCeeEEEEEcCCCCCCCCceeEEEEcccc
Q 043705 525 KLNVLTKSVQTWSVGTRRFIGEPIFVPKGV------EEDDGYLLVIEYAVSIQRCYLIILNPKKIGEGDALVARLEVPRH 598 (614)
Q Consensus 525 K~D~~~g~~~~w~~~~~~~~gEPvFVPr~~------~EDDG~LL~~v~d~~~~~s~L~VLDA~~l~eg~~pVAr~~lP~~ 598 (614)
|+|++||+.+.|++++++++||||||||+. +|||||||++|+|..+++|+|+||||++|++ |||++||++
T Consensus 434 K~D~~tg~~~~~~~g~~~~~~EPvFVPrp~~~~~~~~EDDG~lLs~V~d~~~~~S~LlILDA~~l~~----vArv~LP~r 509 (529)
T 3npe_A 434 KVDLSTGELTKFEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVNAADMRL----EATVQLPSR 509 (529)
T ss_dssp EEETTTCCEEEEECCTTBCCCCCEEEECCSCSSSSCCTTCEEEEEEEEBSSCCCEEEEEEETTTTEE----EEEEEESSC
T ss_pred EEecCCCceEEEEcCCCccccCCEeeeCCCCCCCCCCCCCcEEEEEEEECCCCcEEEEEEeCCCCcc----ceEEECCCC
Confidence 999999999999999999999999999943 8999999999999999999999999999985 999999998
Q ss_pred cCCCccccccccCC
Q 043705 599 LNFPLGFHGFWDNN 612 (614)
Q Consensus 599 ~~vP~GfHG~w~~~ 612 (614)
||+||||+|+++
T Consensus 510 --vP~GfHG~wv~~ 521 (529)
T 3npe_A 510 --VPFGFHGTFITG 521 (529)
T ss_dssp --CCCCSCEEEEEH
T ss_pred --CCCCccccccCH
Confidence 699999999974
No 3
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A
Probab=100.00 E-value=2.1e-102 Score=869.53 Aligned_cols=475 Identities=22% Similarity=0.323 Sum_probs=360.0
Q ss_pred ccchhhccccCccccCCCeeeeeeecCCCCCCCCceEEEecCCccccCCCCcccCCCccccEEEEEEeCCCCcEEEEEEE
Q 043705 67 FWDYQFLFVSQRSETTAPITLHLVDGAIPSDFPSGTYYLTGPGLFTDDHGSTVHPLDGHGYLRAFEFDGVTGEVKYMAKY 146 (614)
Q Consensus 67 ~~d~~~~f~~~~~E~~~~~~l~~v~G~IP~~L~~GtlyRnGPg~~~~~~~~~~H~FDGdGmv~~f~f~~~~g~v~y~~Ry 146 (614)
..-++.+|+++ +|+.++++|+ |+|+||+|| +|||||||||+++.+..+++||||||||||+|+|++ |+|+|+|||
T Consensus 9 ~~~~~~~f~~~-~E~~~p~~l~-V~G~IP~~L-~Gtl~RNGPg~~~~g~~~~~HwFDGdGmlh~~~~~~--G~v~y~~R~ 83 (533)
T 3kvc_A 9 AGGYKKLFETV-EELSSPLTAH-VTGRIPLWL-TGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKE--GHVTYHRRF 83 (533)
T ss_dssp TCGGGGGGSCC-CCCSSCEECE-EEECCCTTC-CEEEEEEEECCCEETTEECCBTTTSCEEEEEEEEET--TEEEEEEEE
T ss_pred cchhhhhcCcc-cccCCceeee-EEeeCCCCC-ceEEEEeCCCccccCCcccccccCCCCEEEEEEEeC--CEEEEEEEE
Confidence 33578899977 4657889998 899999999 999999999999887777899999999999999996 899999999
Q ss_pred eccchhhhhcCCCCccce----eeecCC----cccccCCcccCCcccccCcceeeeEEECCEEEEEeeCCCceeecCCCC
Q 043705 147 VKTDAQVEEHDPQTDTWR----FTHRGP----FSVLKGGKKFGNTKVMKNVANTSVLKWGGKLLCLWEGGDPYEIESGTL 218 (614)
Q Consensus 147 V~T~~~~~e~~~~~~~~~----~~~~g~----fs~~~~~~~~~n~~~~kn~ANT~V~~~ggrLlAl~E~g~P~~lDp~TL 218 (614)
|||++|++|+++++.++. ...++| |+.+.. .+. ....+|+|||||++|+||||||||++.||+|||+||
T Consensus 84 v~T~~~~~e~~agr~~~~~fg~~~~~~p~~~~~~~~~~--~~~-~~~~~~~ANt~v~~~~g~LlAl~E~~~p~~iDp~tL 160 (533)
T 3kvc_A 84 IRTDAYVRAMTEKRIVITEFGTCAFPDPCKNIFSRFFS--YFR-GVEVTDNALVNIYPVGEDYYACTETNFITKVNPETL 160 (533)
T ss_dssp CCCHHHHHHHHHTSCCSCBTTBCC----------------------CCCCCCCSEEEEETTEEEEECSSSEEEEECTTTC
T ss_pred ecCHHHHHHHHcCCcceeccCcccCCcchhhHHHHHHH--hhc-cCCCCCCCEEEEEEECCEEEEEEcCCcCEEeChHHc
Confidence 999999999877654321 111222 111100 011 113689999999999999999999999999999999
Q ss_pred ceeeeeccCCCCCcCCCCCcchhhhhhhhccccccceeeeCCccccCCCcCCCCCCcEEEEEeccccCCCCCccEEEEEE
Q 043705 219 DTIGQLQMMDGGDSLGKNSKDLWDVAAEMLKPILYGVFKMPPKRLLSHYKLDAPRNRLLTVSCNAEDMLLPRSNFTFYEF 298 (614)
Q Consensus 219 eT~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~g~~~~p~~~~tAHpk~Dp~tg~l~~~~~~~~~~~~~~~~~~~~~~ 298 (614)
||+|.++|++.+ +...+|||||+|| ||||++|+++.... ....|.+|++
T Consensus 161 eT~G~~d~~g~l----------------------------~~~~~tAHPk~Dp-tGel~~fg~~~~~~--~~~~y~v~~~ 209 (533)
T 3kvc_A 161 ETIKQVDLCNYV----------------------------SVNGATAHPHIEN-DGTVYNIGNCFGKN--FSIAYNIVKI 209 (533)
T ss_dssp CEEEEEEHHHHS----------------------------SCSCCCSCCEECT-TSCEEEEEEECC-----CCEEEEEEE
T ss_pred ccccccccCCcc----------------------------CCCccCCCCccCC-CCCEEEEeeccCCC--CCcEEEEEEE
Confidence 999999996532 1125999999999 99999999986421 1367999999
Q ss_pred cCCC-----cEEee---EEEe---ecccceeeeeeecCceEEEeecceeechhhhhhh-hcCCCcceecceeCCCCCCcc
Q 043705 299 DSNF-----KLLNK---QEFN---ILDHLMIHDWAFTDTHYILFANRVKLDVLGSMTA-VSGLSPMISALSVNPSKPTSP 366 (614)
Q Consensus 299 d~~g-----~~~~~---~~~~---~p~~~~iHdfa~Teny~V~~~~p~~~d~~~~~~~-~~G~~~~~~~l~~~p~~~t~~ 366 (614)
++++ .+.+. ..++ ++.++|||||+|||||+||+++|+++|+.+++.. .++.++++++|+|+|+++++
T Consensus 210 ~~~~~~~~~~~~~~~v~~~i~~~~~~~p~~iHDFaiTeny~Vf~~~P~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~tr- 288 (533)
T 3kvc_A 210 PPLQADKEDPISKSEIVVQFPCSDRFKPSYVHSFGLTPNYIVFVETPVKINLFKFLSSWSLWGANYMDCFESNETMGVW- 288 (533)
T ss_dssp CCCCTTCCCGGGGCEEEEEEECSSTTCCBCCCCCEECSSEEEEEECSEEEC-----------CCCSGGGEEECSSCCEE-
T ss_pred CccccccccccccceeEEeeccccCCCCceeeeeeecCCEEEEEeCCeEEcHHHHhhcccccCCChHHheeecCCCCcE-
Confidence 8652 22221 1232 4578999999999999999999999999987653 34467899999999999995
Q ss_pred EEEEeCCCCCCCCccceeeeEEeCCCceeeeeeceeeccCCCCCeEEEEEEeeeccCC-cccccccccccCCCCCC-ccc
Q 043705 367 VYLLPRFPNKSVGVRDWRVPVEAPSQMWLLHVGNAFELKDVDGNTEIQIHACSCSYEW-FNFQNLFGYNWQSGRLD-PSI 444 (614)
Q Consensus 367 i~vipR~~~~~~~~~~w~~~~~~~~~~f~fH~~NAyEe~d~~g~~~v~iv~d~~~y~~-~~~~~~~~~~~~~~~~~-p~~ 444 (614)
|+||||++++.. ..| ++++ +||+||++||||++ | +||+|.|+|++ .++...++++ +...+ ..+
T Consensus 289 ~~VipR~~~~~~--~~~---~~~~-~~f~fH~~NA~Ee~---~----~Iv~d~~~~~~~~~~~~~~~~~--~l~~~~~~~ 353 (533)
T 3kvc_A 289 LHIADKKRKKYI--NNK---YRTS-PFNLFHHINTYEDH---E----FLIVDLCCWKGFEFVYNYLYLA--NLRENWEEV 353 (533)
T ss_dssp EEEEETTTTEEE--EEE---EEEC-CEEEEEEEEEEEET---T----EEEEEEEEEESSSCGGGGCBHH--HHTSCHHHH
T ss_pred EEEEECCCCCcc--cEE---EEeC-CeeEEeeeeeEEeC---C----EEEEEEeeeCCchhhhhhhhhh--hhcccchhc
Confidence 999999987642 345 7887 59999999999973 4 38889999987 4433222211 00000 001
Q ss_pred ccccccccccCCeEEEEEEEccCCC---------------c-------eeEeecccccccCC-CccCcccCC-CCCCCcc
Q 043705 445 MNLKESEYQLLPHLVQVSISLDVDG---------------N-------CQKCTVEPLNQWKK-SSDFPIINP-TYSGQKT 500 (614)
Q Consensus 445 ~~~~~~~~~~~~~L~R~~idl~~~g---------------~-------~~~~~~~~l~~~~~-~~EfP~in~-~~~G~~y 500 (614)
... ......++|+||+|||.++. . ...|+.+.|...+. ++|||+||+ +|.||+|
T Consensus 354 ~~~--~~~~~~~~l~R~~l~l~~~~~~~~~nl~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~~~~EfP~In~~~~~Gr~~ 431 (533)
T 3kvc_A 354 KKN--ARKAPQPEVRRYVLPLNIDKADTGKNLVTLPNTTATAILCSDETIWLEPEVLFSGPRQAFEFPQINYQKYGGKPY 431 (533)
T ss_dssp HHH--HTTSCEEEEEEEEEESCCCGGGTTSBCCCCTTCCCEEEECTTSEEEEECEEEECBTTEEEEEEECCHHHHTTSCC
T ss_pred ccc--ccccCCceEEEEEEeCCcccccccccccccccccceeeeccCCceeeeeeeeccCCcccccCceECHHHhCCCcc
Confidence 000 01123468999999997630 0 01144455653236 899999999 7999999
Q ss_pred ceEEEeeecCCcCCCCCCCCCeeEEEeccCCcEEEEEcCCCccccccEEeeC--CCCCCCeEEEEEEEeCCC--CeeEEE
Q 043705 501 TCIYAATSLGTRRALPHFPFDTVVKLNVLTKSVQTWSVGTRRFIGEPIFVPK--GVEEDDGYLLVIEYAVSI--QRCYLI 576 (614)
Q Consensus 501 ry~Y~~~~~~~~~~~~~~~~~~lvK~D~~~g~~~~w~~~~~~~~gEPvFVPr--~~~EDDG~LL~~v~d~~~--~~s~L~ 576 (614)
||+|+++... ..+++|+|+|++||+.+.|+ ++++++|||||||| +.+|||||||++|+|..+ ++|+|+
T Consensus 432 Ry~Y~~~~~~-------~~~~~l~K~D~~tg~~~~w~-~~~~~~~EPiFVPrp~~~~EDDG~lLs~V~d~~~~~~~s~Ll 503 (533)
T 3kvc_A 432 TYAYGLGLNH-------FVPDRLCKLNVKTKETWVWQ-EPDSYPSEPIFVSHPDALEEDDGVVLSVVVSPGAGQKPAYLL 503 (533)
T ss_dssp CEEEEEEEET-------TEEEEEEEEETTTCCEEEEC-CTTCBCCCCEEEECTTCCSTTCEEEEEEEECCSTTSCSEEEE
T ss_pred cEEEEeccCC-------CCCceeEEEEcCCCCEEEEe-CCCccccCceeecCCCCCCCCCcEEEEEEEeCCcCCCccEEE
Confidence 9999987642 35799999999999999997 78999999999999 468999999999999985 678999
Q ss_pred EEcCCCCCCCCceeEEEEcccccCCCccccccccCC
Q 043705 577 ILNPKKIGEGDALVARLEVPRHLNFPLGFHGFWDNN 612 (614)
Q Consensus 577 VLDA~~l~eg~~pVAr~~lP~~~~vP~GfHG~w~~~ 612 (614)
||||++|++ |||++||++ ||+||||+|++.
T Consensus 504 ILDA~~l~~----vArv~lP~r--vP~GfHG~w~~~ 533 (533)
T 3kvc_A 504 ILNAKDLSE----VARAEVEIN--IPVTFHGLFKKS 533 (533)
T ss_dssp EEETTTCCE----EEEEEESSC--CCCCCEEEEEEC
T ss_pred EEeCCCChh----hEEEEeCCC--CCCCccccccCC
Confidence 999999985 999999998 699999999874
No 4
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=31.14 E-value=1.2e+02 Score=29.62 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=15.8
Q ss_pred CeeEEEEEcCCCCCCCCceeEEEEccc
Q 043705 571 QRCYLIILNPKKIGEGDALVARLEVPR 597 (614)
Q Consensus 571 ~~s~L~VLDA~~l~eg~~pVAr~~lP~ 597 (614)
+.+.|.++|+++++. +.++.+-.
T Consensus 122 gs~~l~~iDp~t~~~----~~~I~V~~ 144 (243)
T 3mbr_X 122 GTAVIRKLDPDTLQQ----VGSIKVTA 144 (243)
T ss_dssp SSSEEEEECTTTCCE----EEEEECEE
T ss_pred CCCeEEEEeCCCCeE----EEEEEEcc
Confidence 566778888887764 77766653
No 5
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=23.16 E-value=1.9e+02 Score=28.52 Aligned_cols=20 Identities=10% Similarity=0.275 Sum_probs=13.4
Q ss_pred CeeEEEeccCCcEE-EEEcCC
Q 043705 521 DTVVKLNVLTKSVQ-TWSVGT 540 (614)
Q Consensus 521 ~~lvK~D~~~g~~~-~w~~~~ 540 (614)
++|.++|+++|+.. ....++
T Consensus 65 S~v~~vD~~Tgkv~~~~~l~~ 85 (262)
T 3nol_A 65 SSIRKVDIESGKTLQQIELGK 85 (262)
T ss_dssp EEEEEECTTTCCEEEEEECCT
T ss_pred ceEEEEECCCCcEEEEEecCC
Confidence 57888898888753 344443
No 6
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=22.71 E-value=73 Score=31.54 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=29.3
Q ss_pred eEEECCEEEEEe-eCCCceeecCCCCceeeeeccCC
Q 043705 194 VLKWGGKLLCLW-EGGDPYEIESGTLDTIGQLQMMD 228 (614)
Q Consensus 194 V~~~ggrLlAl~-E~g~P~~lDp~TLeT~g~~~~~~ 228 (614)
+..++++||.++ ..+.-+.+|+.||+.++.+.+.+
T Consensus 92 it~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~ 127 (262)
T 3nol_A 92 ISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG 127 (262)
T ss_dssp EEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS
T ss_pred EEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC
Confidence 556799999765 67899999999999999988743
No 7
>4guc_A Protein BA_2500; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: PGE; 1.40A {Bacillus anthracis}
Probab=20.76 E-value=2.3e+02 Score=24.56 Aligned_cols=52 Identities=10% Similarity=0.112 Sum_probs=36.8
Q ss_pred CCCCCcEEEEEeccccCCCCCccEEEEEEc----CCCcEEeeEEEeecccceeeeeeecCceEEEe
Q 043705 270 DAPRNRLLTVSCNAEDMLLPRSNFTFYEFD----SNFKLLNKQEFNILDHLMIHDWAFTDTHYILF 331 (614)
Q Consensus 270 Dp~tg~l~~~~~~~~~~~~~~~~~~~~~~d----~~g~~~~~~~~~~p~~~~iHdfa~Teny~V~~ 331 (614)
|-++|..+.+....... ..+-+.+|+++ ++|.|.+.+.+ ||+..+.++.+|-
T Consensus 33 ~lktGdtf~it~~~~~~--d~g~~KIyrv~~~~~~~g~L~RYkTI--------~d~~~~~~~~~f~ 88 (120)
T 4guc_A 33 DLKHGDTFDVTIYTGGK--DTGIVKIYQLSGNENDEINLHRYKTI--------YDSGLKHNYGRFV 88 (120)
T ss_dssp CEETTCEEEEEEECCSS--BCCEEEEEEECSCTTCSCCEEEEEEE--------ECCCCCTTEEEEE
T ss_pred ccccCCEEEEEEEcCCC--ccceEEEEEEccCCCCCcceEEEEEe--------ccCCCcCCeeEEE
Confidence 34588888887765431 12359999996 46888775554 7888899977764
No 8
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=18.34 E-value=1.1e+02 Score=29.79 Aligned_cols=36 Identities=14% Similarity=0.345 Sum_probs=29.8
Q ss_pred eeEEECCEEEEEe-eCCCceeecCCCCceeeeeccCC
Q 043705 193 SVLKWGGKLLCLW-EGGDPYEIESGTLDTIGQLQMMD 228 (614)
Q Consensus 193 ~V~~~ggrLlAl~-E~g~P~~lDp~TLeT~g~~~~~~ 228 (614)
.+..++++||.++ ..+.-+.+|+.||+.++.+.+.+
T Consensus 69 Gi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~ 105 (243)
T 3mbr_X 69 GIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPG 105 (243)
T ss_dssp EEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSS
T ss_pred EEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC
Confidence 3556789999765 78899999999999999988743
No 9
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=18.15 E-value=81 Score=31.33 Aligned_cols=34 Identities=12% Similarity=-0.005 Sum_probs=28.1
Q ss_pred eEEECCEEEEEe-eCCCceeecCCCCceeeeeccC
Q 043705 194 VLKWGGKLLCLW-EGGDPYEIESGTLDTIGQLQMM 227 (614)
Q Consensus 194 V~~~ggrLlAl~-E~g~P~~lDp~TLeT~g~~~~~ 227 (614)
+..++++||.++ ..+.-+.+|+.||+.++.+.+.
T Consensus 101 it~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~ 135 (268)
T 3nok_A 101 LASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS 135 (268)
T ss_dssp EEECSSCEEEEESSSCEEEEEETTTTEEEEEEECS
T ss_pred EEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC
Confidence 445678999665 6789999999999999998874
No 10
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=14.51 E-value=2.4e+02 Score=29.58 Aligned_cols=78 Identities=13% Similarity=0.172 Sum_probs=47.0
Q ss_pred ceEEEeeecCCcCCCCCCCCCeeEEEeccCCcEE-EEEcCCCccccccEEeeCCCCCCCeEEEEEEEeCC-----CCeeE
Q 043705 501 TCIYAATSLGTRRALPHFPFDTVVKLNVLTKSVQ-TWSVGTRRFIGEPIFVPKGVEEDDGYLLVIEYAVS-----IQRCY 574 (614)
Q Consensus 501 ry~Y~~~~~~~~~~~~~~~~~~lvK~D~~~g~~~-~w~~~~~~~~gEPvFVPr~~~EDDG~LL~~v~d~~-----~~~s~ 574 (614)
+++|.+..... ... +.|..+|+.+++.. ....+ ..+ .-.|-| |..+|.+.-.... +....
T Consensus 85 ~~vyV~n~~~~-----~~~-~~VsVID~~t~~vv~~I~vG--~~P-gia~Sp-----Dgk~lyVan~~~~~~~~G~~~~~ 150 (426)
T 3c75_H 85 RRVYIQDPAHF-----AAI-TQQFVIDGSTGRILGMTDGG--FLP-HPVAAE-----DGSFFAQASTVFERIARGKRTDY 150 (426)
T ss_dssp TEEEEEECTTT-----CSS-EEEEEEETTTTEEEEEEEEC--SSC-EEEECT-----TSSCEEEEEEEEEETTEEEEEEE
T ss_pred CEEEEECCCcC-----CCC-CeEEEEECCCCEEEEEEECC--CCC-ceEECC-----CCCEEEEEeccccccccCCCCCE
Confidence 55887764211 111 79999999999864 34333 333 322323 3445655432111 13468
Q ss_pred EEEEcCCCCCCCCceeEEEEcc
Q 043705 575 LIILNPKKIGEGDALVARLEVP 596 (614)
Q Consensus 575 L~VLDA~~l~eg~~pVAr~~lP 596 (614)
+.|+|+++++ +++++.+|
T Consensus 151 VsviD~~t~~----vv~~I~v~ 168 (426)
T 3c75_H 151 VEVFDPVTFL----PIADIELP 168 (426)
T ss_dssp EEEECTTTCC----EEEEEEET
T ss_pred EEEEECCCCc----EEEEEECC
Confidence 9999999997 59999987
Done!