Query 043705
Match_columns 614
No_of_seqs 149 out of 1086
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 12:50:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043705.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043705hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qksa2 b.70.2.1 (A:136-567) C 14.6 50 0.0037 31.8 3.8 35 558-596 378-413 (432)
2 d2mysa1 b.34.3.1 (A:34-79) Myo 14.2 66 0.0048 21.5 3.0 32 548-582 5-36 (46)
3 d1zaka2 g.41.2.1 (A:128-158) M 11.7 36 0.0026 20.9 0.9 15 268-282 3-17 (31)
4 d1hzua2 b.70.2.1 (A:118-543) C 11.1 67 0.0049 30.3 3.4 33 560-596 375-407 (426)
5 d1pbyb_ b.69.2.2 (B:) Quinohem 10.0 3.9E+02 0.028 22.4 8.4 26 201-226 4-29 (337)
6 d1pbyb_ b.69.2.2 (B:) Quinohem 9.5 3.1E+02 0.022 23.1 7.4 63 521-598 260-322 (337)
7 d1l0qa2 b.69.2.3 (A:1-301) Sur 8.9 2.3E+02 0.017 23.6 6.2 77 502-605 3-79 (301)
8 d1utca2 b.69.6.1 (A:4-330) Cla 8.6 2.7E+02 0.019 25.9 6.5 61 484-561 253-313 (327)
9 d1m7ja2 b.92.1.6 (A:420-480) N 8.1 36 0.0027 23.9 -0.1 35 572-612 7-41 (61)
10 d1jmxb_ b.69.2.2 (B:) Quinohem 8.0 4.7E+02 0.034 21.8 8.1 74 500-597 8-82 (346)
No 1
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}
Probab=14.59 E-value=50 Score=31.77 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=27.6
Q ss_pred Ce-EEEEEEEeCCCCeeEEEEEcCCCCCCCCceeEEEEcc
Q 043705 558 DG-YLLVIEYAVSIQRCYLIILNPKKIGEGDALVARLEVP 596 (614)
Q Consensus 558 DG-~LL~~v~d~~~~~s~L~VLDA~~l~eg~~pVAr~~lP 596 (614)
|| +|++.++...+..+.++|+|++++++ ++++.-+
T Consensus 378 DG~~v~~S~~~~~~~~g~i~i~D~~T~k~----~~~i~~~ 413 (432)
T d1qksa2 378 DGTEVWFSVWNGKDQESALVVVDDKTLEL----KHVIKDE 413 (432)
T ss_dssp TSSEEEEEEECCTTSCCEEEEEETTTTEE----EEEECCT
T ss_pred CCCEEEEEEecCCCCCCcEEEEECCCceE----EeEecCC
Confidence 44 77777777777778999999999985 7777665
No 2
>d2mysa1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=14.16 E-value=66 Score=21.46 Aligned_cols=32 Identities=6% Similarity=0.017 Sum_probs=21.7
Q ss_pred EEeeCCCCCCCeEEEEEEEeCCCCeeEEEEEcCCC
Q 043705 548 IFVPKGVEEDDGYLLVIEYAVSIQRCYLIILNPKK 582 (614)
Q Consensus 548 vFVPr~~~EDDG~LL~~v~d~~~~~s~L~VLDA~~ 582 (614)
+|||. |.+||+-+.+-....+..-+-.-|.++
T Consensus 5 vwVpD---~ke~yv~~~Iks~~GdkvTV~t~~G~t 36 (46)
T d2mysa1 5 VFVVH---PKQSFVKGTIQSKEGGKVTVKTEGGET 36 (46)
T ss_dssp EEEEC---SSSSEEEEEEEEECSSEEEECCSSSCC
T ss_pred EEccc---CcccEEEEEEEEccCCEEEEEECCCCE
Confidence 68884 678999998877666655544445444
No 3
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=11.66 E-value=36 Score=20.87 Aligned_cols=15 Identities=13% Similarity=0.392 Sum_probs=11.5
Q ss_pred cCCCCCCcEEEEEec
Q 043705 268 KLDAPRNRLLTVSCN 282 (614)
Q Consensus 268 k~Dp~tg~l~~~~~~ 282 (614)
++||.||+++-+.++
T Consensus 3 R~DP~TG~iYH~~f~ 17 (31)
T d1zaka2 3 RLDPVTGKIYHLKYS 17 (31)
T ss_dssp EECTTTCCEEESSSS
T ss_pred cCCCCCCcEeEEecC
Confidence 369999999876554
No 4
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=11.13 E-value=67 Score=30.29 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=25.8
Q ss_pred EEEEEEEeCCCCeeEEEEEcCCCCCCCCceeEEEEcc
Q 043705 560 YLLVIEYAVSIQRCYLIILNPKKIGEGDALVARLEVP 596 (614)
Q Consensus 560 ~LL~~v~d~~~~~s~L~VLDA~~l~eg~~pVAr~~lP 596 (614)
+|++.++......+.+.|+|+++++. ++++.-+
T Consensus 375 ~i~vs~~~~~~~~~~i~v~D~~T~k~----~~~i~~~ 407 (426)
T d1hzua2 375 EVWFSVWNGKNDSSALVVVDDKTLKL----KAVVKDP 407 (426)
T ss_dssp EEEEEECCCTTSCCEEEEEETTTTEE----EEEECCT
T ss_pred EEEEEEecCCCCCCeEEEEECCCCeE----EEEECCC
Confidence 77777777777778899999999974 7776544
No 5
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}
Probab=10.02 E-value=3.9e+02 Score=22.36 Aligned_cols=26 Identities=8% Similarity=0.059 Sum_probs=20.5
Q ss_pred EEEEeeCCCceeecCCCCceeeeecc
Q 043705 201 LLCLWEGGDPYEIESGTLDTIGQLQM 226 (614)
Q Consensus 201 LlAl~E~g~P~~lDp~TLeT~g~~~~ 226 (614)
|++-.+.+.-+-+|..|.+.+.....
T Consensus 4 ~vt~~~d~~v~v~D~~s~~~~~~i~~ 29 (337)
T d1pbyb_ 4 ILAPARPDKLVVIDTEKMAVDKVITI 29 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEcCCCEEEEEECCCCeEEEEEEC
Confidence 45556778889999999998887655
No 6
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}
Probab=9.47 E-value=3.1e+02 Score=23.11 Aligned_cols=63 Identities=6% Similarity=0.054 Sum_probs=36.1
Q ss_pred CeeEEEeccCCcEEEEEcCCCccccccEEeeCCCCCCCeEEEEEEEeCCCCeeEEEEEcCCCCCCCCceeEEEEcccc
Q 043705 521 DTVVKLNVLTKSVQTWSVGTRRFIGEPIFVPKGVEEDDGYLLVIEYAVSIQRCYLIILNPKKIGEGDALVARLEVPRH 598 (614)
Q Consensus 521 ~~lvK~D~~~g~~~~w~~~~~~~~gEPvFVPr~~~EDDG~LL~~v~d~~~~~s~L~VLDA~~l~eg~~pVAr~~lP~~ 598 (614)
+.|..+|+.+++...-.. .+ +.|.-+.= ..|..+|.+. ..+ +.+.|+|++++++ |.++.+|..
T Consensus 260 ~~i~v~d~~~~~~~~~~~-~~---~~~~~~~~--s~dG~~l~v~----~~~-~~i~v~D~~t~~~----v~~i~~~g~ 322 (337)
T d1pbyb_ 260 NVLESFDLEKNASIKRVP-LP---HSYYSVNV--STDGSTVWLG----GAL-GDLAAYDAETLEK----KGQVDLPGN 322 (337)
T ss_dssp SEEEEEETTTTEEEEEEE-CS---SCCCEEEE--CTTSCEEEEE----SBS-SEEEEEETTTCCE----EEEEECGGG
T ss_pred ccEEEEECCCCcEEEEEc-CC---CCEEEEEE--CCCCCEEEEE----eCC-CcEEEEECCCCcE----EEEEECCCC
Confidence 467778888887544321 11 22222211 1233355432 122 4599999999975 999999864
No 7
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}
Probab=8.86 E-value=2.3e+02 Score=23.60 Aligned_cols=77 Identities=17% Similarity=0.259 Sum_probs=0.0
Q ss_pred eEEEeeecCCcCCCCCCCCCeeEEEeccCCcEEEEEcCCCccccccEEeeCCCCCCCeEEEEEEEeCCCCeeEEEEEcCC
Q 043705 502 CIYAATSLGTRRALPHFPFDTVVKLNVLTKSVQTWSVGTRRFIGEPIFVPKGVEEDDGYLLVIEYAVSIQRCYLIILNPK 581 (614)
Q Consensus 502 y~Y~~~~~~~~~~~~~~~~~~lvK~D~~~g~~~~w~~~~~~~~gEPvFVPr~~~EDDG~LL~~v~d~~~~~s~L~VLDA~ 581 (614)
|+|-+.... +.|..+|+++++... ...-+..+..-.|-|.+. .++-.......+.|+|.+
T Consensus 3 ~~yV~~~~~----------~~v~v~D~~t~~~~~-~i~~g~~p~~va~spdG~---------~l~v~~~~~~~i~v~d~~ 62 (301)
T d1l0qa2 3 FAYIANSES----------DNISVIDVTSNKVTA-TIPVGSNPMGAVISPDGT---------KVYVANAHSNDVSIIDTA 62 (301)
T ss_dssp EEEEEETTT----------TEEEEEETTTTEEEE-EEECSSSEEEEEECTTSS---------EEEEEEGGGTEEEEEETT
T ss_pred EEEEEECCC----------CEEEEEECCCCeEEE-EEECCCCceEEEEeCCCC---------EEEEEECCCCEEEEEECC
Q ss_pred CCCCCCceeEEEEcccccCCCccc
Q 043705 582 KIGEGDALVARLEVPRHLNFPLGF 605 (614)
Q Consensus 582 ~l~eg~~pVAr~~lP~~~~vP~Gf 605 (614)
+.+. ++++..... |.++
T Consensus 63 t~~~----~~~~~~~~~---~~~~ 79 (301)
T d1l0qa2 63 TNNV----IATVPAGSS---PQGV 79 (301)
T ss_dssp TTEE----EEEEECSSS---EEEE
T ss_pred CCce----eeeeecccc---cccc
No 8
>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.56 E-value=2.7e+02 Score=25.95 Aligned_cols=61 Identities=23% Similarity=0.351 Sum_probs=41.3
Q ss_pred CCccCcccCCCCCCCccceEEEeeecCCcCCCCCCCCCeeEEEeccCCcEEEEEcCCCccccccEEeeCCCCCCCeEE
Q 043705 484 KSSDFPIINPTYSGQKTTCIYAATSLGTRRALPHFPFDTVVKLNVLTKSVQTWSVGTRRFIGEPIFVPKGVEEDDGYL 561 (614)
Q Consensus 484 ~~~EfP~in~~~~G~~yry~Y~~~~~~~~~~~~~~~~~~lvK~D~~~g~~~~w~~~~~~~~gEPvFVPr~~~EDDG~L 561 (614)
..-|||.-- ....+|--+|.++-. .-|.-+|++||+.-.- ++..+|+||+-.+.++..|.+
T Consensus 253 a~~DFPvam--qvs~kygiiyviTK~-----------G~i~lyDleTgt~i~~----nRIs~~~iF~~a~~~~~~Gi~ 313 (327)
T d1utca2 253 AQNDFPVAM--QISEKHDVVFLITKY-----------GYIHLYDLETGTCIYM----NRISGETIFVTAPHEATAGII 313 (327)
T ss_dssp CTTCCEEEE--EEETTTTEEEEEETT-----------SEEEEEETTTCCEEEE----EECCSSCEEEEEEETTTTEEE
T ss_pred ccCCcEEEE--EeeccCCEEEEEecC-----------cEEEEEEcccccEEEE----eecCCCceEEeccCCCCceEE
Confidence 345777511 134577888988642 3567789999987553 367899999988655556655
No 9
>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}
Probab=8.10 E-value=36 Score=23.88 Aligned_cols=35 Identities=23% Similarity=0.495 Sum_probs=26.1
Q ss_pred eeEEEEEcCCCCCCCCceeEEEEcccccCCCccccccccCC
Q 043705 572 RCYLIILNPKKIGEGDALVARLEVPRHLNFPLGFHGFWDNN 612 (614)
Q Consensus 572 ~s~L~VLDA~~l~eg~~pVAr~~lP~~~~vP~GfHG~w~~~ 612 (614)
...|+|||..++.+ -|...-|.. .+-|++..|+..
T Consensus 7 ~ADlvvfDp~~i~d----~~~~~~~~~--~~~Gi~~v~VnG 41 (61)
T d1m7ja2 7 YADLVVFDPATVAD----SATFEHPTE--RAAGIHSVYVNG 41 (61)
T ss_dssp BCCEEEECTTTCBC----CCCSSSTTC--CCBSEEEEEETT
T ss_pred CCCEEEECHHHccC----ccccccccc--ccceeEEEEECC
Confidence 35799999999876 456666765 478888888764
No 10
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}
Probab=7.99 E-value=4.7e+02 Score=21.84 Aligned_cols=74 Identities=7% Similarity=0.108 Sum_probs=0.0
Q ss_pred cceEEEeeecCCcCCCCCCCCCeeEEEeccCCcE-EEEEcCCCccccccEEeeCCCCCCCeEEEEEEEeCCCCeeEEEEE
Q 043705 500 TTCIYAATSLGTRRALPHFPFDTVVKLNVLTKSV-QTWSVGTRRFIGEPIFVPKGVEEDDGYLLVIEYAVSIQRCYLIIL 578 (614)
Q Consensus 500 yry~Y~~~~~~~~~~~~~~~~~~lvK~D~~~g~~-~~w~~~~~~~~gEPvFVPr~~~EDDG~LL~~v~d~~~~~s~L~VL 578 (614)
.+|.+....+ +.|.-+|+.+++. .....+.+..+..-.|-|++. .+|-.......+.++
T Consensus 8 ~~~l~~~~~~-----------~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~---------~l~v~~~~~~~v~~~ 67 (346)
T d1jmxb_ 8 HEYMIVTNYP-----------NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNR---------TAYVLNNHYGDIYGI 67 (346)
T ss_dssp CEEEEEEETT-----------TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSS---------EEEEEETTTTEEEEE
T ss_pred CcEEEEEcCC-----------CEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCC---------EEEEEECCCCcEEEE
Q ss_pred cCCCCCCCCceeEEEEccc
Q 043705 579 NPKKIGEGDALVARLEVPR 597 (614)
Q Consensus 579 DA~~l~eg~~pVAr~~lP~ 597 (614)
|..+.+. +.++.+..
T Consensus 68 d~~t~~~----~~~~~~~~ 82 (346)
T d1jmxb_ 68 DLDTCKN----TFHANLSS 82 (346)
T ss_dssp ETTTTEE----EEEEESCC
T ss_pred eCccCee----eeeecccc
Done!