BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043706
(586 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 89/164 (54%), Gaps = 5/164 (3%)
Query: 114 LRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALA 173
L+ L L NN F G +P ++ + +EL L LS N +SG +P +G + +L+ L L +N L
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 174 GKVPRNLTAVKSLTVVSLRSNYFSGSIPSGF---TSVEVLDLSSNLFNGSLPLDFGG-GN 229
G++P+ L VK+L + L N +G IPSG T++ + LS+N G +P G N
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 230 LRYLNLSYNKISGSISPEFAKRIPQNVTIDLSFNNLTGAIPGAL 273
L L LS N SG+I E + +DL+ N G IP A+
Sbjct: 513 LAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAM 555
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 109/202 (53%), Gaps = 10/202 (4%)
Query: 76 IDATTIPGSPDMFRVISL--ILPNSQLLGSVTKDLGLIQHLRHLDLSNNFFNGSLPLSIF 133
I I G D+ R ++L + +S + LG L+HLD+S N +G +I
Sbjct: 182 ISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIS 241
Query: 134 SATELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAGKVPRNLT-AVKSLTVVSLR 192
+ TEL++L++S+N G +P L + LQ L+L+ N G++P L+ A +LT + L
Sbjct: 242 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 299
Query: 193 SNYFSGSIPSGF---TSVEVLDLSSNLFNGSLPLD--FGGGNLRYLNLSYNKISGSISPE 247
N+F G++P F + +E L LSSN F+G LP+D L+ L+LS+N+ SG +
Sbjct: 300 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 359
Query: 248 FAKRIPQNVTIDLSFNNLTGAI 269
+T+DLS NN +G I
Sbjct: 360 LTNLSASLLTLDLSSNNFSGPI 381
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Query: 89 RVISLILPNSQLLGSVTKDLGLIQHLRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAI 148
++SL L + L G++ LG + LR L L N G +P + L+ L L N +
Sbjct: 416 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 475
Query: 149 SGELPDLIGQIPRLQLLNLSVNALAGKVPRNLTAVKSLTVVSLRSNYFSGSIPSGF---T 205
+GE+P + L ++LS N L G++P+ + +++L ++ L +N FSG+IP+
Sbjct: 476 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 535
Query: 206 SVEVLDLSSNLFNGSLP 222
S+ LDL++NLFNG++P
Sbjct: 536 SLIWLDLNTNLFNGTIP 552
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 111/244 (45%), Gaps = 56/244 (22%)
Query: 80 TIP---GSPDMFRVISLILPNSQLLGSVTKDLGLIQHLRHLDLSNNFFNGSLPLSIFSAT 136
TIP GS R + L L + L G + ++L ++ L L L N G +P + + T
Sbjct: 430 TIPSSLGSLSKLRDLKLWL--NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 487
Query: 137 ELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAGKVPRNLTAVKSLTVVSLRSNYF 196
L +SLSNN ++GE+P IG++ L +L LS N+ +G +P L +SL + L +N F
Sbjct: 488 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 547
Query: 197 SGSIPS-----------------------------------------GFTSVEV------ 209
+G+IP+ G S ++
Sbjct: 548 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 607
Query: 210 --LDLSSNLFNGSLPLDF-GGGNLRYLNLSYNKISGSISPEFAKRIPQNVTIDLSFNNLT 266
+++S ++ G F G++ +L++SYN +SG I E +P ++L N+++
Sbjct: 608 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDIS 666
Query: 267 GAIP 270
G+IP
Sbjct: 667 GSIP 670
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 93 LILPNSQLLGSVTKDLGLIQHLRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGEL 152
L L N+ G + L L L LS N+ +G++P S+ S ++L+ L L N + GE+
Sbjct: 396 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 455
Query: 153 PDLIGQIPRLQLLNLSVNALAGKVPRNLTAVKSLTVVSLRSNYFSGSIPSGFTSVE---V 209
P + + L+ L L N L G++P L+ +L +SL +N +G IP +E +
Sbjct: 456 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 515
Query: 210 LDLSSNLFNGSLPLDFGGG-NLRYLNLSYNKISGSISPEFAKR 251
L LS+N F+G++P + G +L +L+L+ N +G+I K+
Sbjct: 516 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 558
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 8/172 (4%)
Query: 107 DLGLIQHLRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLN 166
D+ +L LD+S+N F+ +P + + LQ L +S N +SG+ I L+LLN
Sbjct: 192 DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 250
Query: 167 LSVNALAGKVPRNLTAVKSLTVVSLRSNYFSGSIPSGFT----SVEVLDLSSNLFNGSLP 222
+S N G +P +KSL +SL N F+G IP + ++ LDLS N F G++P
Sbjct: 251 ISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Query: 223 LDFGGGNLRYLNLSY-NKISGSISPEFAKRIPQNVTIDLSFNNLTGAIPGAL 273
FG +L N SG + + ++ +DLSFN +G +P +L
Sbjct: 309 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 360
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 55/88 (62%)
Query: 114 LRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALA 173
+ LD+S N +G +P I S L +L+L +N ISG +PD +G + L +L+LS N L
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 174 GKVPRNLTAVKSLTVVSLRSNYFSGSIP 201
G++P+ ++A+ LT + L +N SG IP
Sbjct: 691 GRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 105/276 (38%), Gaps = 73/276 (26%)
Query: 92 SLILPNSQLLGSVTKDLGLIQHLRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGE 151
+LIL + L G + L +L + LSNN G +P I L +L LSNN+ SG
Sbjct: 467 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Query: 152 LPDLIGQIPRLQLLNLSVNAL-----------AGKVPRNLTAVKSLTVV----------- 189
+P +G L L+L+ N +GK+ N A K +
Sbjct: 527 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 586
Query: 190 --------SLRS---NYFSGSIPSGFTS----------------VEVLDLSSNLFNGSLP 222
+RS N S P TS + LD+S N+ +G +P
Sbjct: 587 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 646
Query: 223 LDFGG-GNLRYLNLSYNKISGSISPEFAK----------------RIPQNVT-------I 258
+ G L LNL +N ISGSI E RIPQ ++ I
Sbjct: 647 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 706
Query: 259 DLSFNNLTGAIPGALPLVNQRMESFSGNVELCGKPL 294
DLS NNL+G IP F N LCG PL
Sbjct: 707 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 742
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 27/159 (16%)
Query: 113 HLRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNAL 172
L+HL +S N +G + +S L+ L +S+N S +P +G LQ L++S N L
Sbjct: 176 ELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKL 232
Query: 173 AGKVPRNLTAVKSLTVVSLRSNYFSGSIPSGFTSVEVLDLSSNLFNGSLPLDFGGGNLRY 232
+G R ++ L ++++ SN F G IP LPL +L+Y
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVGPIPP------------------LPLK----SLQY 270
Query: 233 LNLSYNKISGSISPEFAKRIPQNVT-IDLSFNNLTGAIP 270
L+L+ NK +G I P+F +T +DLS N+ GA+P
Sbjct: 271 LSLAENKFTGEI-PDFLSGACDTLTGLDLSGNHFYGAVP 308
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 9/139 (6%)
Query: 40 LLSFKYSILSDPLSVLQNWNYDDATPCSWTGVTCTQIDATTIPGSPDMFRVISLILPNSQ 99
LL F+ I S+ L+ L N PC+ +T T P + ++ L + +
Sbjct: 590 LLEFQ-GIRSEQLNRLSTRN-----PCN---ITSRVYGGHTSPTFDNNGSMMFLDMSYNM 640
Query: 100 LLGSVTKDLGLIQHLRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQI 159
L G + K++G + +L L+L +N +GS+P + L +L LS+N + G +P + +
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 160 PRLQLLNLSVNALAGKVPR 178
L ++LS N L+G +P
Sbjct: 701 TMLTEIDLSNNNLSGPIPE 719
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 89/164 (54%), Gaps = 5/164 (3%)
Query: 114 LRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALA 173
L+ L L NN F G +P ++ + +EL L LS N +SG +P +G + +L+ L L +N L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 174 GKVPRNLTAVKSLTVVSLRSNYFSGSIPSGF---TSVEVLDLSSNLFNGSLPLDFGG-GN 229
G++P+ L VK+L + L N +G IPSG T++ + LS+N G +P G N
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 230 LRYLNLSYNKISGSISPEFAKRIPQNVTIDLSFNNLTGAIPGAL 273
L L LS N SG+I E + +DL+ N G IP A+
Sbjct: 516 LAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAM 558
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 96/168 (57%), Gaps = 8/168 (4%)
Query: 108 LGLIQHLRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNL 167
LG L+HLD+S N +G +I + TEL++L++S+N G +P L + LQ L+L
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSL 276
Query: 168 SVNALAGKVPRNLT-AVKSLTVVSLRSNYFSGSIPSGF---TSVEVLDLSSNLFNGSLPL 223
+ N G++P L+ A +LT + L N+F G++P F + +E L LSSN F+G LP+
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336
Query: 224 D--FGGGNLRYLNLSYNKISGSISPEFAKRIPQNVTIDLSFNNLTGAI 269
D L+ L+LS+N+ SG + +T+DLS NN +G I
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Query: 89 RVISLILPNSQLLGSVTKDLGLIQHLRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAI 148
++SL L + L G++ LG + LR L L N G +P + L+ L L N +
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478
Query: 149 SGELPDLIGQIPRLQLLNLSVNALAGKVPRNLTAVKSLTVVSLRSNYFSGSIPSGF---T 205
+GE+P + L ++LS N L G++P+ + +++L ++ L +N FSG+IP+
Sbjct: 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538
Query: 206 SVEVLDLSSNLFNGSLP 222
S+ LDL++NLFNG++P
Sbjct: 539 SLIWLDLNTNLFNGTIP 555
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 111/244 (45%), Gaps = 56/244 (22%)
Query: 80 TIP---GSPDMFRVISLILPNSQLLGSVTKDLGLIQHLRHLDLSNNFFNGSLPLSIFSAT 136
TIP GS R + L L + L G + ++L ++ L L L N G +P + + T
Sbjct: 433 TIPSSLGSLSKLRDLKLWL--NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490
Query: 137 ELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAGKVPRNLTAVKSLTVVSLRSNYF 196
L +SLSNN ++GE+P IG++ L +L LS N+ +G +P L +SL + L +N F
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550
Query: 197 SGSIPS-----------------------------------------GFTSVEV------ 209
+G+IP+ G S ++
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610
Query: 210 --LDLSSNLFNGSLPLDF-GGGNLRYLNLSYNKISGSISPEFAKRIPQNVTIDLSFNNLT 266
+++S ++ G F G++ +L++SYN +SG I E +P ++L N+++
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDIS 669
Query: 267 GAIP 270
G+IP
Sbjct: 670 GSIP 673
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 93 LILPNSQLLGSVTKDLGLIQHLRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGEL 152
L L N+ G + L L L LS N+ +G++P S+ S ++L+ L L N + GE+
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458
Query: 153 PDLIGQIPRLQLLNLSVNALAGKVPRNLTAVKSLTVVSLRSNYFSGSIPSGFTSVE---V 209
P + + L+ L L N L G++P L+ +L +SL +N +G IP +E +
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518
Query: 210 LDLSSNLFNGSLPLDFGGG-NLRYLNLSYNKISGSISPEFAKR 251
L LS+N F+G++P + G +L +L+L+ N +G+I K+
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 8/172 (4%)
Query: 107 DLGLIQHLRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLN 166
D+ +L LD+S+N F+ +P + + LQ L +S N +SG+ I L+LLN
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253
Query: 167 LSVNALAGKVPRNLTAVKSLTVVSLRSNYFSGSIPSGFT----SVEVLDLSSNLFNGSLP 222
+S N G +P +KSL +SL N F+G IP + ++ LDLS N F G++P
Sbjct: 254 ISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Query: 223 LDFGGGNLRYLNLSY-NKISGSISPEFAKRIPQNVTIDLSFNNLTGAIPGAL 273
FG +L N SG + + ++ +DLSFN +G +P +L
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 55/88 (62%)
Query: 114 LRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALA 173
+ LD+S N +G +P I S L +L+L +N ISG +PD +G + L +L+LS N L
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 174 GKVPRNLTAVKSLTVVSLRSNYFSGSIP 201
G++P+ ++A+ LT + L +N SG IP
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 105/276 (38%), Gaps = 73/276 (26%)
Query: 92 SLILPNSQLLGSVTKDLGLIQHLRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGE 151
+LIL + L G + L +L + LSNN G +P I L +L LSNN+ SG
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 152 LPDLIGQIPRLQLLNLSVNAL-----------AGKVPRNLTAVKSLTVV----------- 189
+P +G L L+L+ N +GK+ N A K +
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589
Query: 190 --------SLRS---NYFSGSIPSGFTS----------------VEVLDLSSNLFNGSLP 222
+RS N S P TS + LD+S N+ +G +P
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649
Query: 223 LDFGG-GNLRYLNLSYNKISGSISPEFAK----------------RIPQNVT-------I 258
+ G L LNL +N ISGSI E RIPQ ++ I
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709
Query: 259 DLSFNNLTGAIPGALPLVNQRMESFSGNVELCGKPL 294
DLS NNL+G IP F N LCG PL
Sbjct: 710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 745
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 27/159 (16%)
Query: 113 HLRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNAL 172
L+HL +S N +G + +S L+ L +S+N S +P +G LQ L++S N L
Sbjct: 179 ELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKL 235
Query: 173 AGKVPRNLTAVKSLTVVSLRSNYFSGSIPSGFTSVEVLDLSSNLFNGSLPLDFGGGNLRY 232
+G R ++ L ++++ SN F G IP LPL +L+Y
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPP------------------LPLK----SLQY 273
Query: 233 LNLSYNKISGSISPEFAKRIPQNVT-IDLSFNNLTGAIP 270
L+L+ NK +G I P+F +T +DLS N+ GA+P
Sbjct: 274 LSLAENKFTGEI-PDFLSGACDTLTGLDLSGNHFYGAVP 311
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 118/278 (42%), Gaps = 55/278 (19%)
Query: 67 SWTGVTCTQIDATTIPGSPDMFRVISLILPNSQLLGSVTKDLGLIQHLRHLDLSNNFFNG 126
+W GV C D T + + L LP + S +L + L ++ NN G
Sbjct: 37 TWLGVLC---DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL-YIGGINNLV-G 91
Query: 127 SLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAGKVPRNLTAVKSL 186
+P +I T+L L +++ +SG +PD + QI L L+ S NAL+G +P +++++ +L
Sbjct: 92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151
Query: 187 TVVSLRSNYFSGSIPSGFTSVEVL----DLSSNLFNGSLPLDFGGGNLRYLNLSYNKISG 242
++ N SG+IP + S L +S N G +P F NL +++LS N + G
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211
Query: 243 SISPEFAK---------------------------------------RIPQNVT------ 257
S F +PQ +T
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271
Query: 258 -IDLSFNNLTGAIPGALPLVNQRMESFSGNVELCGKPL 294
+++SFNNL G IP L + +++ N LCG PL
Sbjct: 272 SLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 57/96 (59%), Gaps = 7/96 (7%)
Query: 473 ELEVETLFKASAYILCTSSSSIVYKAVLADGTTLAVRRIGETCFERLK----DLESQVKA 528
EL+V + ++ IL VYK LADGT +AV+R+ E ER + +++V+
Sbjct: 32 ELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKE---ERXQGGELQFQTEVEM 88
Query: 529 IAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLAS 564
I+ H NL++LRGF E+LL++ Y++NG +AS
Sbjct: 89 ISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVAS 124
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 7/83 (8%)
Query: 486 ILCTSSSSIVYKAVLADGTTLAVRRIGETCFERLK----DLESQVKAIAKLKHPNLVKLR 541
IL VYK LADG +AV+R+ E ER + +++V+ I+ H NL++LR
Sbjct: 37 ILGRGGFGKVYKGRLADGXLVAVKRLKE---ERTQGGELQFQTEVEMISMAVHRNLLRLR 93
Query: 542 GFYWEDEEKLLIHDYVSNGCLAS 564
GF E+LL++ Y++NG +AS
Sbjct: 94 GFCMTPTERLLVYPYMANGSVAS 116
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 4/134 (2%)
Query: 66 CSWTGVTCTQIDATTIPGSPDMFRVISLILPNSQLLGSVTKD--LGLIQHLRHLDLSNNF 123
C T V CT IP D+ + +L N LG ++ D G + HL L+L N
Sbjct: 8 CEGTTVDCTGRGLKEIP--RDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ 65
Query: 124 FNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAGKVPRNLTAV 183
G P + A+ +Q L L N I + + +L+ LNL N ++ +P + +
Sbjct: 66 LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125
Query: 184 KSLTVVSLRSNYFS 197
SLT ++L SN F+
Sbjct: 126 NSLTSLNLASNPFN 139
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 494 IVYKAVLADGTTLAVRRIGE----TCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEE 549
+VYK + + TT+AV+++ T E + + ++K +AK +H NLV+L GF + ++
Sbjct: 46 VVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDD 104
Query: 550 KLLIHDYVSNGCL 562
L++ Y+ NG L
Sbjct: 105 LCLVYVYMPNGSL 117
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 494 IVYKAVLADGTTLAVRRIGE----TCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEE 549
+VYK + + TT+AV+++ T E + + ++K +AK +H NLV+L GF + ++
Sbjct: 40 VVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDD 98
Query: 550 KLLIHDYVSNGCL 562
L++ Y+ NG L
Sbjct: 99 LCLVYVYMPNGSL 111
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 494 IVYKAVLADGTTLAVRRIGE----TCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEE 549
+VYK + + TT+AV+++ T E + + ++K +AK +H NLV+L GF + ++
Sbjct: 46 VVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDD 104
Query: 550 KLLIHDYVSNGCL 562
L++ Y+ NG L
Sbjct: 105 LCLVYVYMPNGSL 117
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%)
Query: 495 VYKAVLADGTTLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIH 554
VYK VL DG +A++R + +++ E++++ ++ +HP+LV L GF E E +LI+
Sbjct: 55 VYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIY 114
Query: 555 DYVSNGCL 562
Y+ NG L
Sbjct: 115 KYMENGNL 122
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%)
Query: 495 VYKAVLADGTTLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIH 554
VYK VL DG +A++R + +++ E++++ ++ +HP+LV L GF E E +LI+
Sbjct: 55 VYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIY 114
Query: 555 DYVSNGCL 562
Y+ NG L
Sbjct: 115 KYMENGNL 122
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 113/259 (43%), Gaps = 46/259 (17%)
Query: 75 QIDATTIPGSPDMFRVISLILPNSQLLGSVTKDLGLIQHLRHLDLSNNFFNGS--LPLSI 132
QI+A + P D++ I N + L T+ L +++L+ LDLS++ S L +
Sbjct: 317 QINAASFPSLRDLY-----IKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQL 371
Query: 133 FSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAGKVPRN------------- 179
+ LQ L+LS N G + P+L+LL+++ L K P +
Sbjct: 372 KNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNL 431
Query: 180 ------------LTAVKSLTVVSLRSNYFS-GSIPSG-----FTSVEVLDLSS-NLFNGS 220
L ++ L ++L+ N F GSI S+E+L LSS NL +
Sbjct: 432 SHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSID 491
Query: 221 LPLDFGGGNLRYLNLSYNKISGSISPEFAKRIPQNVTIDLSFNNLTGAIPGALPLVNQRM 280
G N+ +L+LS+N ++G + + + ++++ NN+ P LP ++Q+
Sbjct: 492 QQAFHGLRNVNHLDLSHNSLTGDSMDALSHL--KGLYLNMASNNIRIIPPHLLPALSQQ- 548
Query: 281 ESFSGNVELCGKPLKNLCS 299
+ L PL CS
Sbjct: 549 ----SIINLSHNPLDCTCS 563
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 494 IVYKAVLADGTTLAVRRIGE----TCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEE 549
+VYK + + TT+AV+++ T E + + ++K AK +H NLV+L GF + ++
Sbjct: 37 VVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVXAKCQHENLVELLGFSSDGDD 95
Query: 550 KLLIHDYVSNGCL 562
L++ Y NG L
Sbjct: 96 LCLVYVYXPNGSL 108
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 503 GTTLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEK--LLIHDYVSNG 560
G +AV+++ + E L+D E +++ + L+H N+VK +G + + LI +Y+ G
Sbjct: 42 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 101
Query: 561 CLASFSFTHASK 572
L + HA +
Sbjct: 102 SLRDYLQAHAER 113
>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5Q|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
Length = 348
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 477 ETLFKASAYILCTSSSSIVYKAVLADGTTLAVRRI---GETCFERLKDLESQVKAIAKLK 533
E LF I S ++ + + + +A++++ G+ E+ +D+ +V+ + KL+
Sbjct: 53 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR 112
Query: 534 HPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFS 566
HPN ++ RG Y + L+ +Y CL S S
Sbjct: 113 HPNTIQYRGCYLREHTAWLVMEY----CLGSAS 141
>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure
pdb|2GCD|B Chain B, Tao2 Kinase Domain-Staurosporine Structure
Length = 309
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 477 ETLFKASAYILCTSSSSIVYKAVLADGTTLAVRRI---GETCFERLKDLESQVKAIAKLK 533
E LF I S ++ + + + +A++++ G+ E+ +D+ +V+ + KL+
Sbjct: 14 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR 73
Query: 534 HPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFS 566
HPN ++ RG Y + L+ +Y CL S S
Sbjct: 74 HPNTIQYRGCYLREHTAWLVMEY----CLGSAS 102
>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACC|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACD|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACD|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACG|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACG|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACH|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACH|B Chain B, Gsk3b In Complex With Inhibitor
Length = 465
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 464 TLVTVDGETELEVETLFKASAYILCTSSSSIVYKAVLAD-GTTLAVRRIGETCFERLKDL 522
T+V G+ + + ++ S +VY+A L D G +A++++ + +R K+
Sbjct: 84 TVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD--KRFKNR 141
Query: 523 ESQVKAIAKLKHPNLVKLRGFYWEDEEKL------LIHDYV 557
E Q+ + KL H N+V+LR F++ EK L+ DYV
Sbjct: 142 ELQI--MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV 180
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTHASKF 573
+D S+ + + HPN+++L G +++ +Y+ NG L +F TH +F
Sbjct: 95 RDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQF 148
>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3D|B Chain B, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3W|A Chain A, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q3W|B Chain B, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q41|A Chain A, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q41|B Chain B, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q4L|A Chain A, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|1Q4L|B Chain B, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|3Q3B|A Chain A, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
pdb|3Q3B|B Chain B, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
Length = 424
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 464 TLVTVDGETELEVETLFKASAYILCTSSSSIVYKAVLAD-GTTLAVRRIGETCFERLKDL 522
T+V G+ + + ++ S +VY+A L D G +A++++ + +R K+
Sbjct: 43 TVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD--KRFKNR 100
Query: 523 ESQVKAIAKLKHPNLVKLRGFYWEDEEKL------LIHDYV 557
E Q+ + KL H N+V+LR F++ EK L+ DYV
Sbjct: 101 ELQI--MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV 139
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTHASKF 573
+D S+ + + HPN+++L G +++ +Y+ NG L +F TH +F
Sbjct: 95 RDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQF 148
>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp
pdb|1PYX|B Chain B, Gsk-3 Beta Complexed With Amp-Pnp
pdb|3DU8|A Chain A, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
pdb|3DU8|B Chain B, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
Length = 422
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 464 TLVTVDGETELEVETLFKASAYILCTSSSSIVYKAVLAD-GTTLAVRRIGETCFERLKDL 522
T+V G+ + + ++ S +VY+A L D G +A++++ + +R K+
Sbjct: 41 TVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD--KRFKNR 98
Query: 523 ESQVKAIAKLKHPNLVKLRGFYWEDEEKL------LIHDYV 557
E Q+ + KL H N+V+LR F++ EK L+ DYV
Sbjct: 99 ELQI--MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV 137
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 510 RIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTH 569
++G T +R +D + + + HPN+++L G + + +++ +Y+ NG L SF H
Sbjct: 70 KVGYTEKQR-RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKH 128
Query: 570 ASKF 573
++F
Sbjct: 129 DAQF 132
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 510 RIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTH 569
++G T +R +D + + + HPN+++L G + + +++ +Y+ NG L SF H
Sbjct: 53 KVGYTEKQR-RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKH 111
Query: 570 ASKF 573
++F
Sbjct: 112 DAQF 115
>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
Length = 394
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 469 DGETELEVETLFKASAYILCTSSSSIVYKAVLADGTTLAVRRIGETCFERLKDLESQVKA 528
DG+T + E + + ++ S +V++A L + +A++++ + +R K+ E Q+
Sbjct: 31 DGKTGEQREIAY-TNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQD--KRFKNRELQIMR 87
Query: 529 IAKLKHPNLVKLRGFYWEDEEK 550
I +KHPN+V L+ F++ + +K
Sbjct: 88 I--VKHPNVVDLKAFFYSNGDK 107
>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1I09|B Chain B, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1J1B|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1B|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1C|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|1J1C|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|2JLD|A Chain A, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|2JLD|B Chain B, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|3M1S|A Chain A, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3M1S|B Chain B, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3PUP|A Chain A, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
pdb|3PUP|B Chain B, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
Length = 420
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 464 TLVTVDGETELEVETLFKASAYILCTSSSSIVYKAVLAD-GTTLAVRRIGETCFERLKDL 522
T+V G+ + + ++ S +VY+A L D G +A++++ + +R K+
Sbjct: 39 TVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD--KRFKNR 96
Query: 523 ESQVKAIAKLKHPNLVKLRGFYWEDEEKL------LIHDYV 557
E Q+ + KL H N+V+LR F++ EK L+ DYV
Sbjct: 97 ELQI--MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV 135
>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
pdb|3SAY|B Chain B, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
Length = 430
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 464 TLVTVDGETELEVETLFKASAYILCTSSSSIVYKAVLAD-GTTLAVRRIGETCFERLKDL 522
T+V G+ + + ++ S +VY+A L D G +A++++ + +R K+
Sbjct: 39 TVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD--KRFKNR 96
Query: 523 ESQVKAIAKLKHPNLVKLRGFYWEDEEKL------LIHDYV 557
E Q+ + KL H N+V+LR F++ EK L+ DYV
Sbjct: 97 ELQI--MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV 135
>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|1Q5K|B Chain B, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|3I4B|A Chain A, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3I4B|B Chain B, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3L1S|A Chain A, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
pdb|3L1S|B Chain B, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
Length = 414
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 464 TLVTVDGETELEVETLFKASAYILCTSSSSIVYKAVLAD-GTTLAVRRIGETCFERLKDL 522
T+V G+ + + ++ S +VY+A L D G +A++++ + +R K+
Sbjct: 33 TVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD--KRFKNR 90
Query: 523 ESQVKAIAKLKHPNLVKLRGFYWEDEEKL------LIHDYV 557
E Q+ + KL H N+V+LR F++ EK L+ DYV
Sbjct: 91 ELQI--MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV 129
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 510 RIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTH 569
++G T +R +D + + + HPN+++L G + + +++ +Y+ NG L SF H
Sbjct: 82 KVGYTEKQR-RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKH 140
Query: 570 ASKF 573
++F
Sbjct: 141 DAQF 144
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 510 RIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTH 569
++G T +R +D + + + HPN+++L G + + +++ +Y+ NG L SF H
Sbjct: 82 KVGYTEKQR-RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKH 140
Query: 570 ASKF 573
++F
Sbjct: 141 DAQF 144
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 510 RIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTH 569
++G T +R +D + + + HPN+++L G + + +++ +Y+ NG L SF H
Sbjct: 82 KVGYTEKQR-RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKH 140
Query: 570 ASKF 573
++F
Sbjct: 141 DAQF 144
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 510 RIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTH 569
++G T +R +D + + + HPN+++L G + + +++ +Y+ NG L SF H
Sbjct: 82 KVGYTEKQR-RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKH 140
Query: 570 ASKF 573
++F
Sbjct: 141 DAQF 144
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 510 RIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTH 569
++G T +R +D + + + HPN+++L G + + +++ +Y+ NG L SF H
Sbjct: 82 KVGYTEKQR-RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKH 140
Query: 570 ASKF 573
++F
Sbjct: 141 DAQF 144
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 510 RIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTH 569
++G T +R +D + + + HPN+++L G + + +++ +Y+ NG L SF H
Sbjct: 82 KVGYTEKQR-RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKH 140
Query: 570 ASKF 573
++F
Sbjct: 141 DAQF 144
>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex
Length = 353
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 15/109 (13%)
Query: 460 GASG----TLVTVDGETELEVETLFKASAYILCTSSSSIVYKAVLAD-GTTLAVRRIGET 514
GA G T+V G+ + + ++ S +VY+A L D G +A++++ +
Sbjct: 1 GAMGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD 60
Query: 515 CFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKL------LIHDYV 557
+R K+ E Q+ + KL H N+V+LR F++ EK L+ DYV
Sbjct: 61 --KRFKNRELQI--MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV 105
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 510 RIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTH 569
++G T +R +D + + + HPN+++L G + + +++ +Y+ NG L SF H
Sbjct: 80 KVGYTEKQR-RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKH 138
Query: 570 ASKF 573
++F
Sbjct: 139 DAQF 142
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 510 RIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTH 569
++G T +R +D + + + HPN+++L G + + +++ +Y+ NG L SF H
Sbjct: 82 KVGYTEKQR-RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKH 140
Query: 570 ASKF 573
++F
Sbjct: 141 DAQF 144
>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
pdb|1R0E|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
Length = 391
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 464 TLVTVDGETELEVETLFKASAYILCTSSSSIVYKAVLAD-GTTLAVRRIGETCFERLKDL 522
T+V G+ + + ++ S +VY+A L D G +A++++ + +R K+
Sbjct: 10 TVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD--KRFKNR 67
Query: 523 ESQVKAIAKLKHPNLVKLRGFYWEDEEKL------LIHDYV 557
E Q+ + KL H N+V+LR F++ EK L+ DYV
Sbjct: 68 ELQI--MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV 106
>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Imidazopyridine Inhibitor
Length = 382
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 25/142 (17%)
Query: 464 TLVTVDGETELEVETLFKASAYILCTSSSSIVYKAVLAD-GTTLAVRRIGETCFERLKDL 522
T+V G+ + + ++ S +VY+A L D G +A++++ + +R K+
Sbjct: 17 TVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD--KRFKNR 74
Query: 523 ESQVKAIAKLKHPNLVKLRGFYWEDEEKL------LIHDYVSNGCL-ASFSFTHASK--- 572
E Q+ + KL H N+V+LR F++ EK L+ DYV + ++ A +
Sbjct: 75 ELQI--MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLP 132
Query: 573 --------FHLF--FAIIHPFG 584
+ LF A IH FG
Sbjct: 133 VIYVKLYMYQLFRSLAYIHSFG 154
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 503 GTTLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEK--LLIHDYVSNG 560
G +AV+++ + E L+D E +++ + L+H N+VK +G + + LI +Y+ G
Sbjct: 70 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 129
Query: 561 CLASFSFTHASK 572
L + H +
Sbjct: 130 SLRDYLQKHKER 141
>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRK|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRM|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
pdb|3ZRM|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
Length = 371
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 464 TLVTVDGETELEVETLFKASAYILCTSSSSIVYKAVLAD-GTTLAVRRIGETCFERLKDL 522
T+V G+ + + ++ S +VY+A L D G +A++++ + +R K+
Sbjct: 17 TVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD--KRFKNR 74
Query: 523 ESQVKAIAKLKHPNLVKLRGFYWEDEEKL------LIHDYV 557
E Q+ + KL H N+V+LR F++ EK L+ DYV
Sbjct: 75 ELQI--MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV 113
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 503 GTTLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEK--LLIHDYVSNG 560
G +AV+++ + E L+D E +++ + L+H N+VK +G + + LI +Y+ G
Sbjct: 57 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 116
Query: 561 CLASFSFTHASK 572
L + H +
Sbjct: 117 SLRDYLQKHKER 128
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 503 GTTLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEK--LLIHDYVSNG 560
G +AV+++ + E L+D E +++ + L+H N+VK +G + + LI +Y+ G
Sbjct: 39 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 98
Query: 561 CLASFSFTHASK 572
L + H +
Sbjct: 99 SLRDYLQKHKER 110
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 503 GTTLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEK--LLIHDYVSNG 560
G +AV+++ + E L+D E +++ + L+H N+VK +G + + LI +Y+ G
Sbjct: 57 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 116
Query: 561 CLASFSFTHASK 572
L + H +
Sbjct: 117 SLRDYLQKHKER 128
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 503 GTTLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEK--LLIHDYVSNG 560
G +AV+++ + E L+D E +++ + L+H N+VK +G + + LI +Y+ G
Sbjct: 46 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 105
Query: 561 CLASFSFTHASK 572
L + H +
Sbjct: 106 SLRDYLQKHKER 117
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 503 GTTLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEK--LLIHDYVSNG 560
G +AV+++ + E L+D E +++ + L+H N+VK +G + + LI +Y+ G
Sbjct: 39 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 98
Query: 561 CLASFSFTHASK 572
L + H +
Sbjct: 99 SLRDYLQKHKER 110
>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Benzoimidazol Inhibitor
Length = 372
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 464 TLVTVDGETELEVETLFKASAYILCTSSSSIVYKAVLAD-GTTLAVRRIGETCFERLKDL 522
T+V G+ + + ++ S +VY+A L D G +A++++ + +R K+
Sbjct: 18 TVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD--KRFKNR 75
Query: 523 ESQVKAIAKLKHPNLVKLRGFYWEDEEKL------LIHDYV 557
E Q+ + KL H N+V+LR F++ EK L+ DYV
Sbjct: 76 ELQI--MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV 114
>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
pdb|1GNG|B Chain B, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
Length = 378
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 464 TLVTVDGETELEVETLFKASAYILCTSSSSIVYKAVLAD-GTTLAVRRIGETCFERLKDL 522
T+V G+ + + ++ S +VY+A L D G +A++++ + +R K+
Sbjct: 24 TVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD--KRFKNR 81
Query: 523 ESQVKAIAKLKHPNLVKLRGFYWEDEEKL------LIHDYV 557
E Q+ + KL H N+V+LR F++ EK L+ DYV
Sbjct: 82 ELQI--MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV 120
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 503 GTTLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEK--LLIHDYVSNG 560
G +AV+++ + E L+D E +++ + L+H N+VK +G + + LI +Y+ G
Sbjct: 43 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 102
Query: 561 CLASFSFTHASK 572
L + H +
Sbjct: 103 SLRDYLQKHKER 114
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 503 GTTLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEK--LLIHDYVSNG 560
G +AV+++ + E L+D E +++ + L+H N+VK +G + + LI +Y+ G
Sbjct: 37 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 96
Query: 561 CLASFSFTHASK 572
L + H +
Sbjct: 97 SLRDYLQKHKER 108
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 503 GTTLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEK--LLIHDYVSNG 560
G +AV+++ + E L+D E +++ + L+H N+VK +G + + LI +Y+ G
Sbjct: 44 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 103
Query: 561 CLASFSFTHASK 572
L + H +
Sbjct: 104 SLRDYLQKHKER 115
>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
pdb|4AFJ|B Chain B, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
Length = 367
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 464 TLVTVDGETELEVETLFKASAYILCTSSSSIVYKAVLAD-GTTLAVRRIGETCFERLKDL 522
T+V G+ + + ++ S +VY+A L D G +A++++ + +R K+
Sbjct: 13 TVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD--KRFKNR 70
Query: 523 ESQVKAIAKLKHPNLVKLRGFYWEDEEKL------LIHDYV 557
E Q+ + KL H N+V+LR F++ EK L+ DYV
Sbjct: 71 ELQI--MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV 109
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 503 GTTLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEK--LLIHDYVSNG 560
G +AV+++ + E L+D E +++ + L+H N+VK +G + + LI +Y+ G
Sbjct: 42 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 101
Query: 561 CLASFSFTHASK 572
L + H +
Sbjct: 102 SLRDYLQKHKER 113
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 503 GTTLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEK--LLIHDYVSNG 560
G +AV+++ + E L+D E +++ + L+H N+VK +G + + LI +Y+ G
Sbjct: 40 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 99
Query: 561 CLASFSFTHASK 572
L + H +
Sbjct: 100 SLRDYLQKHKER 111
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 503 GTTLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEK--LLIHDYVSNG 560
G +AV+++ + E L+D E +++ + L+H N+VK +G + + LI +Y+ G
Sbjct: 39 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 98
Query: 561 CLASFSFTHASK 572
L + H +
Sbjct: 99 SLRDYLQKHKER 110
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 503 GTTLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEK--LLIHDYVSNG 560
G +AV+++ + E L+D E +++ + L+H N+VK +G + + LI +Y+ G
Sbjct: 45 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 104
Query: 561 CLASFSFTHASK 572
L + H +
Sbjct: 105 SLRDYLQKHKER 116
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 503 GTTLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEK--LLIHDYVSNG 560
G +AV+++ + E L+D E +++ + L+H N+VK +G + + LI +Y+ G
Sbjct: 38 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 97
Query: 561 CLASFSFTHASK 572
L + H +
Sbjct: 98 SLRDYLQKHKER 109
>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex
pdb|3F88|B Chain B, Glycogen Synthase Kinase 3beta Inhibitor Complex
Length = 349
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 464 TLVTVDGETELEVETLFKASAYILCTSSSSIVYKAVLAD-GTTLAVRRIGETCFERLKDL 522
T+V G+ + + ++ S +VY+A L D G +A++++ + +R K+
Sbjct: 5 TVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD--KRFKNR 62
Query: 523 ESQVKAIAKLKHPNLVKLRGFYWEDEEKL------LIHDYV 557
E Q+ + KL H N+V+LR F++ EK L+ DYV
Sbjct: 63 ELQI--MRKLDHCNIVRLRYFFYSSGEKKDVVYLNLVLDYV 101
>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Inhibitor 7d
Length = 350
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 464 TLVTVDGETELEVETLFKASAYILCTSSSSIVYKAVLAD-GTTLAVRRIGETCFERLKDL 522
T+V G+ + + ++ S +VY+A L D G +A++++ + +R K+
Sbjct: 5 TVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD--KRFKNR 62
Query: 523 ESQVKAIAKLKHPNLVKLRGFYWEDEEKL------LIHDYV 557
E Q+ + KL H N+V+LR F++ EK L+ DYV
Sbjct: 63 ELQI--MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV 101
>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
pdb|2OW3|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
Length = 352
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 464 TLVTVDGETELEVETLFKASAYILCTSSSSIVYKAVLAD-GTTLAVRRIGETCFERLKDL 522
T+V G+ + + ++ S +VY+A L D G +A++++ + +R K+
Sbjct: 5 TVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD--KRFKNR 62
Query: 523 ESQVKAIAKLKHPNLVKLRGFYWEDEEKL------LIHDYV 557
E Q+ + KL H N+V+LR F++ EK L+ DYV
Sbjct: 63 ELQI--MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV 101
>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
pdb|3F7Z|B Chain B, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
Length = 350
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 464 TLVTVDGETELEVETLFKASAYILCTSSSSIVYKAVLAD-GTTLAVRRIGETCFERLKDL 522
T+V G+ + + ++ S +VY+A L D G +A++++ + +R K+
Sbjct: 6 TVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD--KRFKNR 63
Query: 523 ESQVKAIAKLKHPNLVKLRGFYWEDEEKL------LIHDYV 557
E Q+ + KL H N+V+LR F++ EK L+ DYV
Sbjct: 64 ELQI--MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV 102
>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|3SD0|B Chain B, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|4B7T|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Leucettine L4
Length = 350
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 464 TLVTVDGETELEVETLFKASAYILCTSSSSIVYKAVLAD-GTTLAVRRIGETCFERLKDL 522
T+V G+ + + ++ S +VY+A L D G +A++++ + +R K+
Sbjct: 5 TVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD--KRFKNR 62
Query: 523 ESQVKAIAKLKHPNLVKLRGFYWEDEEKL------LIHDYV 557
E Q+ + KL H N+V+LR F++ EK L+ DYV
Sbjct: 63 ELQI--MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV 101
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 116 HLDLSNNFFNGSLPLSIFSATELQVLSLSNNAIS--GELPDLIGQIPRLQLLNLSVNALA 173
HLD SNN ++ + TEL+ L L N + ++ ++ Q+ LQ L++S N+++
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 174 GKVPR-NLTAVKSLTVVSLRSNYFSGSIPSGF-TSVEVLDLSSN 215
+ + + KSL +++ SN + +I ++VLDL SN
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN 431
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 503 GTTLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEK--LLIHDYVSNG 560
G +AV+++ + E L+D E +++ + L+H N+VK +G + + LI +++ G
Sbjct: 42 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEFLPYG 101
Query: 561 CLASFSFTHASK 572
L + H +
Sbjct: 102 SLREYLQKHKER 113
>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Pp1
Length = 314
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 504 TTLAVRRIGETCF-ERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCL 562
TT+AV+ + E L+DL S+ + ++ HP+++KL G +D LLI +Y G L
Sbjct: 54 TTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSL 113
Query: 563 ASF 565
F
Sbjct: 114 RGF 116
>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
pdb|2IVS|B Chain B, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
Length = 314
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 504 TTLAVRRIGETCF-ERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCL 562
TT+AV+ + E L+DL S+ + ++ HP+++KL G +D LLI +Y G L
Sbjct: 54 TTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSL 113
Query: 563 ASF 565
F
Sbjct: 114 RGF 116
>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain
pdb|2IVU|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Zd6474
pdb|2X2K|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2L|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|B Chain B, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
Length = 314
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 504 TTLAVRRIGETCF-ERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCL 562
TT+AV+ + E L+DL S+ + ++ HP+++KL G +D LLI +Y G L
Sbjct: 54 TTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSL 113
Query: 563 ASF 565
F
Sbjct: 114 RGF 116
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 510 RIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTH 569
++G T +R +D + + + HPN+++L G + + +++ + + NG L SF H
Sbjct: 53 KVGYTEKQR-RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKH 111
Query: 570 ASKF 573
++F
Sbjct: 112 DAQF 115
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 510 RIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTH 569
++G T +R +D + + + HPN+++L G + + +++ + + NG L SF H
Sbjct: 82 KVGYTEKQR-RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKH 140
Query: 570 ASKF 573
++F
Sbjct: 141 DAQF 144
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 510 RIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTH 569
++G T +R +D + + + HPN+++L G + + +++ + + NG L SF H
Sbjct: 82 KVGYTEKQR-RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKH 140
Query: 570 ASKF 573
++F
Sbjct: 141 DAQF 144
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 494 IVYKAVLADGTTLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLI 553
+V+ + +A++ I E +D + + + KL HP LV+L G E L+
Sbjct: 22 LVHLGYWLNKDKVAIKTIREGAMSE-EDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLV 80
Query: 554 HDYVSNGCLASFSFTHASKF 573
+++ +GCL+ + T F
Sbjct: 81 FEFMEHGCLSDYLRTQRGLF 100
>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide
Length = 350
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 11/101 (10%)
Query: 464 TLVTVDGETELEVETLFKASAYILCTSSSSIVYKAVLAD-GTTLAVRRIGETCFERLKDL 522
T+V G+ + + ++ S +VY+A L D G +A++++ + + K+
Sbjct: 5 TVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQG--KAFKNR 62
Query: 523 ESQVKAIAKLKHPNLVKLRGFYWEDEEKL------LIHDYV 557
E Q+ + KL H N+V+LR F++ EK L+ DYV
Sbjct: 63 ELQI--MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV 101
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTHASKF 573
+D + + + KL HP LV+L G E L+ +++ +GCL+ + T F
Sbjct: 47 EDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLF 100
>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta.
pdb|1H8F|B Chain B, Glycogen Synthase Kinase 3 Beta
Length = 352
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 11/101 (10%)
Query: 464 TLVTVDGETELEVETLFKASAYILCTSSSSIVYKAVLAD-GTTLAVRRIGETCFERLKDL 522
T+V G+ + + ++ S +VY+A L D G +A++++ + + K+
Sbjct: 5 TVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQG--KAFKNR 62
Query: 523 ESQVKAIAKLKHPNLVKLRGFYWEDEEKL------LIHDYV 557
E Q+ + KL H N+V+LR F++ EK L+ DYV
Sbjct: 63 ELQI--MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV 101
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 524 SQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTHA 570
+ + + KL HP LVK G ++ ++ +Y+SNGCL ++ +H
Sbjct: 52 QEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHG 98
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 24/121 (19%)
Query: 450 NVVQQQESKRGASGTLVTVDGETELEVETLFKASAYILCTSSSSIVYKAVLADGTTLAVR 509
N+V ++E GA G + F A Y LC I+ +AV+
Sbjct: 14 NIVLKRELGEGAFGKV--------------FLAECYNLCPEQDKIL----------VAVK 49
Query: 510 RIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTH 569
+ + KD + + + L+H ++VK G E + +++ +Y+ +G L F H
Sbjct: 50 TLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAH 109
Query: 570 A 570
Sbjct: 110 G 110
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 494 IVYKAVLADGTTLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLI 553
+V+ + +A++ I E +D + + + KL HP LV+L G E L+
Sbjct: 25 LVHLGYWLNKDKVAIKTIREGAMSE-EDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLV 83
Query: 554 HDYVSNGCLASFSFTHASKF 573
+++ +GCL+ + T F
Sbjct: 84 FEFMEHGCLSDYLRTQRGLF 103
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTHASKF 573
+D + + + KL HP LV+L G E L+ +++ +GCL+ + T F
Sbjct: 45 EDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLF 98
>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With
6-Bromoindirubin-3'-Oxime
Length = 350
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 11/101 (10%)
Query: 464 TLVTVDGETELEVETLFKASAYILCTSSSSIVYKAVLAD-GTTLAVRRIGETCFERLKDL 522
T+V G+ + + ++ S +VY+A L D G +A++++ + + K+
Sbjct: 5 TVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQG--KAFKNR 62
Query: 523 ESQVKAIAKLKHPNLVKLRGFYWEDEEKL------LIHDYV 557
E Q+ + KL H N+V+LR F++ EK L+ DYV
Sbjct: 63 ELQI--MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV 101
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 78/157 (49%), Gaps = 21/157 (13%)
Query: 97 NSQLLGSVTKDLGLIQHLRHLDLSNNFFNGSLPLSIFSA-TELQVLSLSNNAISGELPD- 154
NS+ L SV G+ L+L +N SLP +F T+L LSLS N I LPD
Sbjct: 15 NSKGLTSVPT--GIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQS-LPDG 70
Query: 155 LIGQIPRLQLLNLSVN---ALAGKVPRNLTAVKSLTVVSLRSNYFSGSIPSG----FTSV 207
+ ++ +L +L L N +L V LT +K L +L +N S+P G TS+
Sbjct: 71 VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL---ALDTNQLK-SVPDGIFDRLTSL 126
Query: 208 EVLDLSSNLFNGSLP-LDFGGGNLRYLNLSYNKISGS 243
+ + L +N ++ S P +D+ R+LN + K GS
Sbjct: 127 QKIWLHTNPWDCSCPRIDYLS---RWLNKNSQKEQGS 160
>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGW|B Chain B, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGY|A Chain A, Crystal Structure Of Itk Inhibitor Complex
pdb|3QGY|B Chain B, Crystal Structure Of Itk Inhibitor Complex
Length = 286
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 521 DLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTHASKF 573
D + + + KL HP LV+L G E L+ +++ +GCL+ + T F
Sbjct: 68 DFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLF 120
>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed
With Imidazo[1,5-A]quinoxaline
Length = 267
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTHASKF 573
+D + + + KL HP LV+L G E L+ +++ +GCL+ + T F
Sbjct: 48 EDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLF 101
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 8/152 (5%)
Query: 60 YDDATPCSWTGVTCTQIDATTIPGSPDMFRVISLILPNSQLLGSVTKDLGLIQHLRHLDL 119
YDD W + + + I + + ++ + N L + ++ + +LR LDL
Sbjct: 221 YDDQL---WHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDL 277
Query: 120 SNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAGKVPRN 179
S+N SLP + S +L+ +N ++ LP G + LQ L + N L + +
Sbjct: 278 SHNRLT-SLPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFLKI 335
Query: 180 LTAVKSLT--VVSLRSNYFSGSIPSGFTSVEV 209
LT KS+T + LR N +P +E+
Sbjct: 336 LTE-KSVTGLIFYLRDNRPEIPLPHERRFIEI 366
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 495 VYKAVLADGTTLAVRRIGET-CFERLKDLESQVKAIAKLKHPNLVK-LRGFYWEDEEKLL 552
VYKA + + LA ++ +T E L+D ++ +A HPN+VK L FY+E+ +L
Sbjct: 53 VYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWIL 112
Query: 553 IH 554
I
Sbjct: 113 IE 114
>pdb|2UV2|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To
4-(4-(
5-Cyclopropyl-1h-Pyrazol-3-Ylamino)-Quinazolin-2-
Ylamino)- Phenyl)-Acetonitrile
Length = 287
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 495 VYKAVLADGTTLAVRRIGET-CFERLKDLESQVKAIAKLKHPNLVK-LRGFYWEDEEKLL 552
VYKA + + LA ++ +T E L+D ++ +A HPN+VK L FY+E+ +L
Sbjct: 26 VYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWIL 85
Query: 553 IH 554
I
Sbjct: 86 IE 87
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 495 VYKAVLADGTTLAVRRIGET-CFERLKDLESQVKAIAKLKHPNLVK-LRGFYWEDEEKLL 552
VYKA + + LA ++ +T E L+D ++ +A HPN+VK L FY+E+ +L
Sbjct: 53 VYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWIL 112
Query: 553 IH 554
I
Sbjct: 113 IE 114
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 495 VYKAVLADGTTLAVRRIGET-CFERLKDLESQVKAIAKLKHPNLVK-LRGFYWEDEEKLL 552
VYKA + + LA ++ +T E L+D ++ +A HPN+VK L FY+E+ +L
Sbjct: 53 VYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWIL 112
Query: 553 IH 554
I
Sbjct: 113 IE 114
>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Novel Bosutinib Isoform 1, Previously Thought
To Be Bosutinib
Length = 293
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 495 VYKAVLADGTTLAVRRIGET-CFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLI 553
VYKA + LA ++ ET E L+D +++ +A HP +VKL G Y+ D + ++
Sbjct: 27 VYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIM 86
Query: 554 HDYVSNGCL 562
++ G +
Sbjct: 87 IEFCPGGAV 95
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 109 GLIQHLRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLS 168
G+ + + L L N F +P + + L ++ LSNN IS + +L L LS
Sbjct: 28 GIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86
Query: 169 VNALAGKVPRNLTAVKSLTVVSLRSNYFSGSIPSG-FTSVEVLDLSSNLFNGSLPLDFGG 227
N L PR +KSL ++SL N S +P G F + L S+L G+ PL +
Sbjct: 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSAL---SHLAIGANPL-YCD 141
Query: 228 GNLRYL 233
N+++L
Sbjct: 142 CNMQWL 147
>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Su11274
pdb|4AOT|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4AOT|B Chain B, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4EQU|A Chain A, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
pdb|4EQU|B Chain B, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
Length = 302
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 495 VYKAVLADGTTLAVRRIGET-CFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLI 553
VYKA + LA ++ ET E L+D +++ +A HP +VKL G Y+ D + ++
Sbjct: 35 VYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIM 94
Query: 554 HDYVSNGCL 562
++ G +
Sbjct: 95 IEFCPGGAV 103
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTHASKF 573
+D S+ + + HPN++ L G + + ++I +Y+ NG L +F + +F
Sbjct: 75 RDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRF 128
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTHASKF 573
+D S+ + + HPN++ L G + + ++I +Y+ NG L +F + +F
Sbjct: 54 RDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRF 107
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTHASKF 573
+D S+ + + HPN++ L G + + ++I +Y+ NG L +F + +F
Sbjct: 60 RDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRF 113
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 47/223 (21%)
Query: 114 LRHLDLSNNFFNGS--LPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNA 171
L+ LDLS+N S L + + + LQ L+LS+N G + P+L+LL+L+
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 172 LAGKVPRN-------------------------LTAVKSLTVVSLRSNYFS-GSIP---- 201
L P++ L + L ++L+ N+F G+I
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNL 468
Query: 202 -SGFTSVEVLDLSSNLFNGSLPLDFGG----GNLRYLNLSYNKISGSISPEFAKRIPQNV 256
S+EVL LSS G L +D G + +++LS+N ++ + + +
Sbjct: 469 LQTVGSLEVLILSS---CGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHL--KGI 523
Query: 257 TIDLSFNNLTGAIPGALPLVNQRMESFSGNVELCGKPLKNLCS 299
++L+ N++ P LP+++Q+ + L PL CS
Sbjct: 524 YLNLAANSINIISPRLLPILSQQ-----STINLSHNPLDCTCS 561
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 510 RIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTH 569
++G T +R +D + + + HPN+V L G + +++ +++ NG L +F H
Sbjct: 80 KVGYTEKQR-RDFLCEASIMGQFDHPNVVHLEGVVTRGKPVMIVIEFMENGALDAFLRKH 138
Query: 570 ASKF 573
+F
Sbjct: 139 DGQF 142
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 497 KAVLA----DGTTLAVRRIGETCFERLKDLES--QVKAIAKLKHPNLVKLRGFYWEDEEK 550
KA+L DG ++ I + + ES +V +A +KHPN+V+ R + E+
Sbjct: 39 KAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSL 98
Query: 551 LLIHDYVSNGCLASFSFTHASKFHLF 576
++ DY G L F +A K LF
Sbjct: 99 YIVMDYCEGGDL--FKRINAQKGVLF 122
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 471 ETELEVETLFKASAYILCTSSSSIVYKAVLADGTTLAVRRIGET-CFERLKDLESQVKAI 529
+ E+E E + L + K+V+A + + GET E+ ++ + +V +
Sbjct: 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIM 77
Query: 530 AKLKHPNLVKLRGF 543
+ L HPN+VKL G
Sbjct: 78 SNLNHPNIVKLYGL 91
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 471 ETELEVETLFKASAYILCTSSSSIVYKAVLADGTTLAVRRIGET-CFERLKDLESQVKAI 529
+ E+E E + L + K+V+A + + GET E+ ++ + +V +
Sbjct: 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIM 77
Query: 530 AKLKHPNLVKLRGF 543
+ L HPN+VKL G
Sbjct: 78 SNLNHPNIVKLYGL 91
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 503 GTTLAVRRIGETCF--ERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNG 560
G+ +AV+ + E F ER+ + +V + +L+HPN+V G + ++ +Y+S G
Sbjct: 60 GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRG 119
Query: 561 CLASFSFTHAS 571
L + H S
Sbjct: 120 SL--YRLLHKS 128
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 510 RIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTH 569
++G T +R +D + + + HPN++ L G + + +++ +Y+ NG L +F +
Sbjct: 59 KVGYTEKQR-RDFLGEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDTFLKKN 117
Query: 570 ASKF 573
+F
Sbjct: 118 DGQF 121
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 470 GETELEVETLFKASAYILCTSSSSIVYKAVLADGTTLAVRRIGET-CFERLKDLESQVKA 528
+ E+E E + L + K+V+A + + GET E+ ++ + +V
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 529 IAKLKHPNLVKLRGF 543
++ L HPN+VKL G
Sbjct: 77 MSNLNHPNIVKLYGL 91
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 503 GTTLAVRRIGETCF--ERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNG 560
G+ +AV+ + E F ER+ + +V + +L+HPN+V G + ++ +Y+S G
Sbjct: 60 GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRG 119
Query: 561 CLASFSFTHAS 571
L + H S
Sbjct: 120 SL--YRLLHKS 128
>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|B Chain B, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|C Chain C, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|D Chain D, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
Length = 286
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 517 ERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTHASKF 573
++ +D S+ + + HPN++ L G + ++I +++ NG L SF + +F
Sbjct: 50 KQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQF 106
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 487 LCTSSSSIVYKAV-LADGTTLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYW 545
L T + +V++ A G A + + + + +++ ++ L+HP LV L +
Sbjct: 165 LGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFE 224
Query: 546 EDEEKLLIHDYVSNGCL 562
+D E ++I++++S G L
Sbjct: 225 DDNEMVMIYEFMSGGEL 241
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 517 ERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTHASKF 573
++ +D S+ + + HPN++ L G + ++I +++ NG L SF + +F
Sbjct: 76 KQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQF 132
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 487 LCTSSSSIVYKAV-LADGTTLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYW 545
L T + +V++ A G A + + + + +++ ++ L+HP LV L +
Sbjct: 59 LGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFE 118
Query: 546 EDEEKLLIHDYVSNGCL 562
+D E ++I++++S G L
Sbjct: 119 DDNEMVMIYEFMSGGEL 135
>pdb|3H8T|A Chain A, Structure Of Porphyromonas Gingivalis Heme-Binding Protein
Hmuy In Complex With Heme
pdb|3H8T|B Chain B, Structure Of Porphyromonas Gingivalis Heme-Binding Protein
Hmuy In Complex With Heme
Length = 191
Score = 32.7 bits (73), Expect = 0.60, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 395 KPEKKQPVEAVTTVAKTEHATWSCLKMIKGEETSDANTSSDSDQDGGNNEYEDHANVVQQ 454
+P + V T+ +++ TW KGE + + +D + D + Y+ N
Sbjct: 5 QPSTPEAVTKTVTIDASKYETWQYFSFSKGEVVNVTDYKNDLNWDMALHRYDVRLNC--- 61
Query: 455 QESKRGASGTLVTVDGETELEVETLFKASAYIL 487
ES +G G + + G+TE++ T Y +
Sbjct: 62 GESGKGKGGAVFS--GKTEMDQATTVPTDGYTV 92
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 117 LDLSNNFFNGSLPLSIFSAT-ELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAGK 175
LD+S N SLPL ELQ L L N + P L+ P+L+ L+L+ N L
Sbjct: 105 LDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
Query: 176 VPRNLTAVKSLTVVSLRSNYFSGSIPSGFTSVEVL 210
L +++L + L+ N +IP GF +L
Sbjct: 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 4/129 (3%)
Query: 117 LDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAGKV 176
LDL NN + L L L NN IS + +LQ L +S N L ++
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EI 117
Query: 177 PRNL-TAVKSLTVVSLRSNYFSGSIPSGFTSVEVLDLSSNLF--NGSLPLDFGGGNLRYL 233
P NL +++ L + R + SG ++ +++ N +G P F G L YL
Sbjct: 118 PPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYL 177
Query: 234 NLSYNKISG 242
+S K++G
Sbjct: 178 RISEAKLTG 186
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 117 LDLSNNFFNGSLPLSIFSAT-ELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAGK 175
LD+S N SLPL ELQ L L N + P L+ P+L+ L+L+ N L
Sbjct: 105 LDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
Query: 176 VPRNLTAVKSLTVVSLRSNYFSGSIPSGFTSVEVL 210
L +++L + L+ N +IP GF +L
Sbjct: 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 79/179 (44%), Gaps = 10/179 (5%)
Query: 128 LPLSIFSA-TELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAGKVPRNLTAVKSL 186
LP + F+ ++L L + N IS P+L ++P L++LNL N L+ + +L
Sbjct: 45 LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 104
Query: 187 TVVSLRSNYFSGSIPSGFTSVE---VLDLSSN-LFNGSLPLDFGGGNLRYLNLSYNKISG 242
T + L SN + F + LDLS N L + L NL+ L LS NKI
Sbjct: 105 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 164
Query: 243 SISPE---FAKRIPQNVTIDLSFNNLTGAIPGALPLVNQRMESFSGNVELCGKPLKNLC 298
S E FA + ++LS N + PG + + F NV+L + LC
Sbjct: 165 LKSEELDIFANSSLK--KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 221
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 79/179 (44%), Gaps = 10/179 (5%)
Query: 128 LPLSIFSA-TELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAGKVPRNLTAVKSL 186
LP + F+ ++L L + N IS P+L ++P L++LNL N L+ + +L
Sbjct: 50 LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 109
Query: 187 TVVSLRSNYFSGSIPSGFTSVE---VLDLSSN-LFNGSLPLDFGGGNLRYLNLSYNKISG 242
T + L SN + F + LDLS N L + L NL+ L LS NKI
Sbjct: 110 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 169
Query: 243 SISPE---FAKRIPQNVTIDLSFNNLTGAIPGALPLVNQRMESFSGNVELCGKPLKNLC 298
S E FA + ++LS N + PG + + F NV+L + LC
Sbjct: 170 LKSEELDIFANSSLK--KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 226
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 79/179 (44%), Gaps = 10/179 (5%)
Query: 128 LPLSIFSA-TELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAGKVPRNLTAVKSL 186
LP + F+ ++L L + N IS P+L ++P L++LNL N L+ + +L
Sbjct: 40 LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99
Query: 187 TVVSLRSNYFSGSIPSGFTSVE---VLDLSSN-LFNGSLPLDFGGGNLRYLNLSYNKISG 242
T + L SN + F + LDLS N L + L NL+ L LS NKI
Sbjct: 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159
Query: 243 SISPE---FAKRIPQNVTIDLSFNNLTGAIPGALPLVNQRMESFSGNVELCGKPLKNLC 298
S E FA + ++LS N + PG + + F NV+L + LC
Sbjct: 160 LKSEELDIFANSSLK--KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 111 IQHLRHLDLSNNFFNGSLPLSIFSATE-LQVLSLSNNAISGELPDLIGQIPRLQLLNLSV 169
+++L HL+L N +P +F E L+ + +N + + G++P+L+ LNL+
Sbjct: 146 MRNLSHLELRANI--EEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLAS 203
Query: 170 NALAGKVPRNLTAVKSLTVVSLRSNYFSGSIP 201
N L + SL + L +N + S P
Sbjct: 204 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 235
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 513 ETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCL 562
E + ++++ + K A LKHPN++ LRG ++ L+ ++ G L
Sbjct: 44 EDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPL 93
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 34/69 (49%)
Query: 502 DGTTLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGC 561
D +AV+ + + KD + + + + L+H ++VK G + + +++ +Y+ +G
Sbjct: 44 DKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGD 103
Query: 562 LASFSFTHA 570
L F H
Sbjct: 104 LNKFLRAHG 112
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 117 LDLSNNFFNGSLPLSIFSAT-ELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAGK 175
LD+S N SLPL ELQ L L N + P L+ P+L+ L+L+ N L
Sbjct: 105 LDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTEL 163
Query: 176 VPRNLTAVKSLTVVSLRSNYFSGSIPSGFTSVEVL 210
L +++L + L+ N +IP GF +L
Sbjct: 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197
>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine
pdb|3GUB|A Chain A, Crystal Structure Of Dapkl93g Complexed With N6-(2-
Phenylethyl)adenosine
Length = 295
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASF 565
+D+E +V + +++HPN++ L Y + +LI + V+ G L F
Sbjct: 59 EDIEREVSILKEIQHPNVITLHEVYENKTDVILIGELVAGGELFDF 104
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Query: 109 GLIQHLRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLS 168
GL + ++ LDLSNN + LQ L L++N I+ D + L+ L+LS
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 169 VNALAGKVPRNLTAVKSLTVVSLRSNYF----SGSIPSGFTSVEVLDLSS-NLFNGSLPL 223
N L+ + SLT ++L N + S+ S T +++L + + + F
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168
Query: 224 DFGG 227
DF G
Sbjct: 169 DFAG 172
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 176 VPRNLT-AVKSLTVVSLRSNYFSGSIPSGFTSVEVLDLSSNLFNGSLPLDFGG-GNLRYL 233
+P LT AVKSL + + R Y S S +++ L L+SN N F G+L +L
Sbjct: 46 IPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105
Query: 234 NLSYNKISGSISPEF 248
+LSYN +S S F
Sbjct: 106 DLSYNYLSNLSSSWF 120
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 10/78 (12%)
Query: 169 VNALAGKVPR-NLTAVKSLTVVSLRS-NYFSG-SIPSGFTSVEVLDLSSN--LFNGSLPL 223
VN G+ P L ++K LT S + N FS +PS +E LDLS N F G
Sbjct: 312 VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS----LEFLDLSRNGLSFKGCCSQ 367
Query: 224 -DFGGGNLRYLNLSYNKI 240
DFG +L+YL+LS+N +
Sbjct: 368 SDFGTTSLKYLDLSFNGV 385
>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant
Length = 334
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASF 565
+D+E +V + +++HPN++ L Y + +LI + V+ G L F
Sbjct: 59 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDF 104
>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In
Complex With A Ruthenium Octasporine Ligand (Osv)
pdb|2Y4P|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|3ZXT|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
Length = 285
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASF 565
+D+E +V + +++HPN++ L Y + +LI + V+ G L F
Sbjct: 59 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDF 104
>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277
Length = 277
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASF 565
+D+E +V + +++HPN++ L Y + +LI + V+ G L F
Sbjct: 59 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDF 104
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Query: 109 GLIQHLRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLS 168
GL + ++ LDLSNN + LQ L L++N I+ D + L+ L+LS
Sbjct: 23 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 169 VNALAGKVPRNLTAVKSLTVVSLRSNYF----SGSIPSGFTSVEVLDLSS-NLFNGSLPL 223
N L+ + SLT ++L N + S+ S T +++L + + + F
Sbjct: 83 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 142
Query: 224 DFGG 227
DF G
Sbjct: 143 DFAG 146
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 176 VPRNLT-AVKSLTVVSLRSNYFSGSIPSGFTSVEVLDLSSNLFNGSLPLDFGG-GNLRYL 233
+P LT AVKSL + + R Y S S +++ L L+SN N F G+L +L
Sbjct: 20 IPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 79
Query: 234 NLSYNKISGSISPEF 248
+LSYN +S S F
Sbjct: 80 DLSYNYLSNLSSSWF 94
>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVX|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVY|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
Length = 278
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASF 565
+D+E +V + +++HPN++ L Y + +LI + V+ G L F
Sbjct: 59 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDF 104
>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex
Length = 334
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASF 565
+D+E +V + +++HPN++ L Y + +LI + V+ G L F
Sbjct: 59 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDF 104
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 169 VNALAGKVPR-NLTAVKSLTVVSLRS-NYFSGSIPSGFTSVEVLDLSSN--LFNGSLPL- 223
VN G+ P L ++K LT S + N FS S+E LDLS N F G
Sbjct: 312 VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQS 368
Query: 224 DFGGGNLRYLNLSYNKI 240
DFG +L+YL+LS+N +
Sbjct: 369 DFGTTSLKYLDLSFNGV 385
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 117 LDLSNNFFNGSLPLSIFSAT-ELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAGK 175
LD+S N SLPL ELQ L L N + P L+ P+L+ L+L+ N L
Sbjct: 105 LDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
Query: 176 VPRNLTAVKSLTVVSLRSNYFSGSIPSGFTSVEVL 210
L +++L + L+ N +IP GF +L
Sbjct: 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197
>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304
Length = 326
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASF 565
+D+E +V + +++HPN++ L Y + +LI + V+ G L F
Sbjct: 59 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDF 104
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 117 LDLSNNFFNGSLPLSIFSAT-ELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAGK 175
LD+S N SLPL ELQ L L N + P L+ P+L+ L+L+ N L
Sbjct: 105 LDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
Query: 176 VPRNLTAVKSLTVVSLRSNYFSGSIPSGFTSVEVL 210
L +++L + L+ N +IP GF +L
Sbjct: 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 21/125 (16%)
Query: 178 RNLTAV-----KSLTVVSLRSNY---FSGSIPSGFTSVEVLDLSSNLF-----NGSLPLD 224
RNLTA+ K T++ L N FS + +T + L+L +G+LP+
Sbjct: 20 RNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV- 78
Query: 225 FGGGNLRYLNLSYNKISGSISPEFAKRIPQNVTIDLSFNNLTGAIPGALPLVNQRMESFS 284
L L+LS+N++ P + +P +D+SFN LT GAL + + E +
Sbjct: 79 -----LGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 285 GNVEL 289
EL
Sbjct: 132 KGNEL 136
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 117 LDLSNNFFNGSLPLSIFSAT-ELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAGK 175
LD+S N SLPL ELQ L L N + P L+ P+L+ L+L+ N L
Sbjct: 105 LDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
Query: 176 VPRNLTAVKSLTVVSLRSNYFSGSIPSGFTSVEVL 210
L +++L + L+ N +IP GF +L
Sbjct: 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 21/125 (16%)
Query: 178 RNLTAV-----KSLTVVSLRSNY---FSGSIPSGFTSVEVLDLSSNLF-----NGSLPLD 224
RNLTA+ K T++ L N FS + +T + L+L +G+LP+
Sbjct: 20 RNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV- 78
Query: 225 FGGGNLRYLNLSYNKISGSISPEFAKRIPQNVTIDLSFNNLTGAIPGALPLVNQRMESFS 284
L L+LS+N++ P + +P +D+SFN LT GAL + + E +
Sbjct: 79 -----LGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 285 GNVEL 289
EL
Sbjct: 132 KGNEL 136
>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312
pdb|2XZS|B Chain B, Death Associated Protein Kinase 1 Residues 1-312
Length = 312
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASF 565
+D+E +V + +++HPN++ L Y + +LI + V+ G L F
Sbjct: 59 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDF 104
>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302
Length = 302
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASF 565
+D+E +V + +++HPN++ L Y + +LI + V+ G L F
Sbjct: 59 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDF 104
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 117 LDLSNNFFNGSLPLSIFSAT-ELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAGK 175
LD+S N SLPL ELQ L L N + P L+ P+L+ L+L+ N L
Sbjct: 105 LDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
Query: 176 VPRNLTAVKSLTVVSLRSNYFSGSIPSGFTSVEVL 210
L +++L + L+ N +IP GF +L
Sbjct: 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 21/125 (16%)
Query: 178 RNLTAV-----KSLTVVSLRSNY---FSGSIPSGFTSVEVLDLSSNLF-----NGSLPLD 224
RNLTA+ K T++ L N FS + +T + L+L +G+LP+
Sbjct: 20 RNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV- 78
Query: 225 FGGGNLRYLNLSYNKISGSISPEFAKRIPQNVTIDLSFNNLTGAIPGALPLVNQRMESFS 284
L L+LS+N++ P + +P +D+SFN LT GAL + + E +
Sbjct: 79 -----LGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 285 GNVEL 289
EL
Sbjct: 132 KGNEL 136
>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With
Bound Inhibitor Fragment
Length = 293
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASF 565
+D+E +V + +++HPN++ L Y + +LI + V+ G L F
Sbjct: 58 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDF 103
>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mn.
pdb|1JKL|A Chain A, 1.6a X-Ray Structure Of Binary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue
pdb|1JKS|A Chain A, 1.5a X-Ray Structure Of Apo Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|A Chain A, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|B Chain B, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKK|A Chain A, 2.4a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mg.
pdb|3F5G|A Chain A, Crystal Structure Of Death Associated Protein Kinase In
Complex With Adp And Mg2+
pdb|3EH9|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Adp
pdb|3EHA|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Amppnp
Length = 294
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASF 565
+D+E +V + +++HPN++ L Y + +LI + V+ G L F
Sbjct: 58 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDF 103
>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp
pdb|3GU5|A Chain A, Crystal Structure Of Dapkq23v-Amppnp-Mg2+
pdb|3GU6|A Chain A, Crystal Structure Of Dapkq23v-Adp
pdb|3GU7|A Chain A, Crystal Structure Of Dapkq23v-Adp-Mg2+
Length = 295
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASF 565
+D+E +V + +++HPN++ L Y + +LI + V+ G L F
Sbjct: 59 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDF 104
>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase
In Complex With Amppnp And Mg2+
Length = 295
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASF 565
+D+E +V + +++HPN++ L Y + +LI + V+ G L F
Sbjct: 59 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDF 104
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 117 LDLSNNFFNGSLPLSIFSAT-ELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAGK 175
LD+S N SLPL ELQ L L N + P L+ P+L+ L+L+ N L
Sbjct: 105 LDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
Query: 176 VPRNLTAVKSLTVVSLRSNYFSGSIPSGFTSVEVL 210
L +++L + L+ N +IP GF +L
Sbjct: 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197
>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain With
Amppnp
pdb|3DGK|A Chain A, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain
Length = 295
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASF 565
+D+E +V + +++HPN++ L Y + +LI + V+ G L F
Sbjct: 59 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDF 104
>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
pdb|2BDW|B Chain B, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
Length = 362
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 519 LKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCL 562
+ LE + + KL+HPN+V+L E+ L+ D V+ G L
Sbjct: 72 FQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGEL 115
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 117 LDLSNNFFNGSLPLSIFSAT-ELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAGK 175
LD+S N SLPL ELQ L L N + P L+ P+L+ L+L+ N L
Sbjct: 105 LDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
Query: 176 VPRNLTAVKSLTVVSLRSNYFSGSIPSGFTSVEVL 210
L +++L + L+ N +IP GF +L
Sbjct: 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 113 HLRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNAL 172
+L+ L LS+N + PL T+L+ LS++ N + + IP L L ++
Sbjct: 64 NLKELHLSHNQISDLSPLK--DLTKLEELSVNRNRLKN-----LNGIPSACLSRLFLDNN 116
Query: 173 AGKVPRNLTAVKSLTVVSLRSNYFSGSIPSGFTS-VEVLDLSSN 215
+ +L +K+L ++S+R+N + GF S +EVLDL N
Sbjct: 117 ELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGN 160
>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
pdb|1ZMV|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
Length = 327
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 503 GTTLAVRRIGETCFER--LKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNG 560
G +AVR I +T L+ L +V+ + L HPN+VKL ++ L+ +Y S G
Sbjct: 39 GKEVAVRIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGG 98
Query: 561 CLASFSFTHA 570
+ + H
Sbjct: 99 EVFDYLVAHG 108
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/54 (22%), Positives = 29/54 (53%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTHASKF 573
++ S+ + + +HPN+++L G +++ +++ NG L SF + +F
Sbjct: 62 REFLSEASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQF 115
>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|B Chain B, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|C Chain C, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|D Chain D, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|E Chain E, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|F Chain F, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
Length = 327
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 503 GTTLAVRRIGETCFER--LKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNG 560
G +AVR I +T L+ L +V+ + L HPN+VKL ++ L+ +Y S G
Sbjct: 39 GKEVAVRIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGG 98
Query: 561 CLASFSFTHA 570
+ + H
Sbjct: 99 EVFDYLVAHG 108
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 117 LDLSNNFFNGSLPLSIFSAT-ELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAGK 175
LD+S N SLPL ELQ L L N + P L+ P+L+ L+L+ N L
Sbjct: 106 LDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 164
Query: 176 VPRNLTAVKSLTVVSLRSNYFSGSIPSGFTSVEVL 210
L +++L + L+ N +IP GF +L
Sbjct: 165 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 198
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 21/125 (16%)
Query: 178 RNLTAV-----KSLTVVSLRSNY---FSGSIPSGFTSVEVL-----DLSSNLFNGSLPLD 224
RNLTA+ K T++ L N FS + +T + L +L+ +G+LP+
Sbjct: 21 RNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV- 79
Query: 225 FGGGNLRYLNLSYNKISGSISPEFAKRIPQNVTIDLSFNNLTGAIPGALPLVNQRMESFS 284
L L+LS+N++ P + +P +D+SFN LT GAL + + E +
Sbjct: 80 -----LGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 132
Query: 285 GNVEL 289
EL
Sbjct: 133 KGNEL 137
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/54 (22%), Positives = 29/54 (53%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTHASKF 573
++ S+ + + +HPN+++L G +++ +++ NG L SF + +F
Sbjct: 60 REFLSEASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQF 113
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 10/78 (12%)
Query: 169 VNALAGKVPR-NLTAVKSLTVVSLRS-NYFSG-SIPSGFTSVEVLDLSSN--LFNGSLPL 223
VN G+ P L ++K LT S + N FS +PS +E LDLS N F G
Sbjct: 336 VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS----LEFLDLSRNGLSFKGCCSQ 391
Query: 224 -DFGGGNLRYLNLSYNKI 240
DFG +L+YL+LS+N +
Sbjct: 392 SDFGTISLKYLDLSFNGV 409
>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human
Pdk1 Complex 2
Length = 311
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 529 IAKLKHPNLVKLRGFYWEDEEKLLIH-DYVSNGCLASF 565
+++L HP VKL F ++D+EKL Y NGCL +
Sbjct: 86 MSRLDHPFFVKLY-FTFQDDEKLYFGLSYAKNGCLLKY 122
>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From
Cryptosporidium Parvum, Cgd7_40
Length = 345
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 508 VRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCL 562
+R+I ER+K ++V+ + KL HPN+ +L Y +++ L+ + G L
Sbjct: 64 IRQINPKDVERIK---TEVRLMKKLHHPNIARLYEVYEDEQYICLVMELCHGGHL 115
>pdb|3KK8|A Chain A, Camkii Substrate Complex A
Length = 284
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 519 LKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCL 562
+ LE + + KL+HPN+V+L E+ L+ D V+ G L
Sbjct: 49 FQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGEL 92
>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex
pdb|3KL8|C Chain C, Camkiintide Inhibitor Complex
pdb|3KL8|E Chain E, Camkiintide Inhibitor Complex
pdb|3KL8|G Chain G, Camkiintide Inhibitor Complex
pdb|3KL8|I Chain I, Camkiintide Inhibitor Complex
Length = 269
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 519 LKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCL 562
+ LE + + KL+HPN+V+L E+ L+ D V+ G L
Sbjct: 49 FQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGEL 92
>pdb|3KK9|A Chain A, Camkii Substrate Complex B
Length = 282
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 519 LKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCL 562
+ LE + + KL+HPN+V+L E+ L+ D V+ G L
Sbjct: 48 FQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGEL 91
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 5/131 (3%)
Query: 115 RHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAG 174
++LDLS N S FS ELQVL LS I + L L L+ N +
Sbjct: 33 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 175 KVPRNLTAVKSL-TVVSLRSNYFS-GSIPSG-FTSVEVLDLSSNLFNG-SLPLDFGG-GN 229
+ + SL +V+L +N S + P G +++ L+++ NL LP F N
Sbjct: 93 LALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 152
Query: 230 LRYLNLSYNKI 240
L +L+LS NKI
Sbjct: 153 LEHLDLSSNKI 163
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 524 SQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCL 562
+VK + L+HPN++K G ++D+ I +Y+ G L
Sbjct: 56 KEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTL 94
>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
pdb|2J90|B Chain B, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
Length = 304
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASF 565
+++E +V + +++HPN++ L + + +LI + VS G L F
Sbjct: 74 EEIEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFDF 119
>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With A Beta-Carboline Ligand
pdb|3BQR|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With An Imidazo-Pyridazine Ligand
Length = 283
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASF 565
+++E +V + +++HPN++ L + + +LI + VS G L F
Sbjct: 53 EEIEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFDF 98
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 501 ADGTTLAVRRIGETCFERLK-DLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSN 559
AD T +AV+ ET LK + + + + HPN+V+L G + + ++ + V
Sbjct: 137 ADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQG 196
Query: 560 GCLASFSFTHASKFHL 575
G +F T ++ +
Sbjct: 197 GDFLTFLRTEGARLRV 212
>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
pdb|1YRP|B Chain B, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
Length = 278
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASF 565
+++E +V + +++HPN++ L + + +LI + VS G L F
Sbjct: 60 EEIEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFDF 105
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
Query: 112 QHLRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNA 171
QHL+HL+L + + EL+ L++ + + PD PRL LNLS NA
Sbjct: 42 QHLQHLELRD----------LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91
Query: 172 L 172
L
Sbjct: 92 L 92
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 501 ADGTTLAVRRIGETCFERLK-DLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSN 559
AD T +AV+ ET LK + + + + HPN+V+L G + + ++ + V
Sbjct: 137 ADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQG 196
Query: 560 GCLASFSFTHASKFHL 575
G +F T ++ +
Sbjct: 197 GDFLTFLRTEGARLRV 212
>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And
Inactive Conformations Suggests A Mechanism Of
Activation For Tec Family Kinases
Length = 283
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 506 LAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASF 565
+A++ I E + +E + K + L H LV+L G + +I +Y++NGCL ++
Sbjct: 51 VAIKMIKEGSMSEDEFIE-EAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNY 109
Query: 566 SFTHASKFH 574
+F
Sbjct: 110 LREMRHRFQ 118
>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|B Chain B, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|C Chain C, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|D Chain D, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|E Chain E, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|F Chain F, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
Length = 294
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 493 SIVYKAVLADGTTLAVRRIGETCF-------ERLKDLESQVKAIAKLKHPNLVKLRGFYW 545
S VY LA+ T L ++ + F E LK E +V ++L H N+V +
Sbjct: 25 STVY---LAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDE 81
Query: 546 EDEEKLLIHDYVSNGCLASFSFTHA 570
ED+ L+ +Y+ L+ + +H
Sbjct: 82 EDDCYYLVMEYIEGPTLSEYIESHG 106
>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine
Kinase Bound To A Pyrrolopyrimidine-Containing Compound
Length = 283
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 506 LAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASF 565
+A++ I E + +E + K + L H LV+L G + +I +Y++NGCL ++
Sbjct: 51 VAIKMIKEGSMSEDEFIE-EAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNY 109
Query: 566 SFTHASKFH 574
+F
Sbjct: 110 LREMRHRFQ 118
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 117 LDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAGKV 176
L+L++N P + ++L +L N+IS P+L +P L++LNL N L+
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQIS 89
Query: 177 PRNLTAVKSLTVVSLRSN 194
+ +LT + L SN
Sbjct: 90 DQTFVFCTNLTELDLMSN 107
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 136 TELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAGKVPRNLTAVKSLTVVSLRSNY 195
TE ++L L N I D P L+ L L+ N ++ P + +L + LRSN
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 196 FSGSIP----SGFTSVEVLDLSSN 215
IP +G +++ LD+S N
Sbjct: 92 LK-LIPLGVFTGLSNLTKLDISEN 114
>pdb|3GNI|B Chain B, Structure Of Strad And Mo25
Length = 389
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 503 GTTLAVRRIG-ETCF-ERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNG 560
G + VRRI E C E + L+ ++ HPN+V R + D E ++ +++ G
Sbjct: 52 GEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYG 111
Query: 561 CLASFSFTH 569
TH
Sbjct: 112 SAKDLICTH 120
>pdb|2WTK|B Chain B, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|E Chain E, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 373
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 503 GTTLAVRRIG-ETCF-ERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNG 560
G + VRRI E C E + L+ ++ HPN+V R + D E ++ +++ G
Sbjct: 36 GEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYG 95
Query: 561 CLASFSFTH 569
TH
Sbjct: 96 SAKDLICTH 104
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 111 IQHLRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGEL--PDLIGQIPRLQLLNLS 168
++ L+ L+L+ N N + + LQVL+LS N + GEL + G +P++ ++L
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL-GELYSSNFYG-LPKVAYIDLQ 346
Query: 169 VNALAGKVPRNLTAVKSLTVVSLRSN-----YFSGSIPSGFTS 206
N +A + ++ L + LR N +F SIP F S
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLS 389
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 15/91 (16%)
Query: 111 IQHLRHLDLSNNFFNGSLPLSIFSA-TELQVLSLSNNAIS----GELPDLIGQIPRLQLL 165
+ HL+ L L++N+ N SLP +FS T L+ LSL++N ++ +LP L++L
Sbjct: 479 LSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP------ANLEIL 531
Query: 166 NLSVNALAGKVPRNLTAVKSLTVVSLRSNYF 196
++S N L P SL+V+ + N F
Sbjct: 532 DISRNQLLAPNP---DVFVSLSVLDITHNKF 559
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCL 562
+ LE + + LKHPN+V+L E+ LI D V+ G L
Sbjct: 55 QKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGEL 97
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 111 IQHLRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVN 170
+ +L ++ SNN PL + T+L + ++NN I+ P + + L L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 171 ALAGKVP-RNLTAVKSLTVVSLRSNYFSG-SIPSGFTSVEVLDLSSNLFNGSLPLDFGGG 228
+ P +NLT + L L SN S S SG TS++ L+ SSN PL
Sbjct: 118 QITDIDPLKNLTNLNRL---ELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPL-ANLT 173
Query: 229 NLRYLNLSYNKIS 241
L L++S NK+S
Sbjct: 174 TLERLDISSNKVS 186
>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
pdb|2R0I|B Chain B, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
Length = 327
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 503 GTTLAVRRIGETCFER--LKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNG 560
G +AV+ I +T L+ L +V+ + L HPN+VKL ++ L+ +Y S G
Sbjct: 39 GKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGG 98
Query: 561 CLASFSFTHA 570
+ + H
Sbjct: 99 EVFDYLVAHG 108
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 111 IQHLRHLDLSNNFFNGSLPLSIF-SATELQVLSLSNNAISGELPDLIGQIPRLQLLNLSV 169
+ HL L+LS NF GS+ +F + +L+VL LS N I +P L+ L L
Sbjct: 322 LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380
Query: 170 NALAGKVPRNLTAVKSLTVVSLRSNYFSGSIP 201
N L + SL + L +N + S P
Sbjct: 381 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412
>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
pdb|1ZMW|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
Length = 327
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 503 GTTLAVRRIGETCFER--LKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNG 560
G +AV+ I +T L+ L +V+ + L HPN+VKL ++ L+ +Y S G
Sbjct: 39 GKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGG 98
Query: 561 CLASFSFTHA 570
+ + H
Sbjct: 99 EVFDYLVAHG 108
>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
pdb|1ZMU|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
Length = 327
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 503 GTTLAVRRIGETCFER--LKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNG 560
G +AV+ I +T L+ L +V+ + L HPN+VKL ++ L+ +Y S G
Sbjct: 39 GKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGG 98
Query: 561 CLASFSFTHA 570
+ + H
Sbjct: 99 EVFDYLVAHG 108
>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Isopropyl-7-
(4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3-
Ylamino)-2h- Phthalazin-1-One
pdb|3PIY|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With R406
pdb|3PIZ|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
(5-Amino-1-O-
Tolyl-1h-Pyrazol-4-Yl)-[3-(1-Methanesulfonyl-Piperidin-
4-Yl)-Phenyl]- Methanone
pdb|3PJ1|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
3-(2,6-Dichloro-
Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]-1-
Methyl-3,4- Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3PJ2|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-[4-(2-
Diethylamino-Ethoxy)-Phenylamino]-6-(4-Fluoro-Phenoxy)-
8-Methyl-8h- Pyrido[2,3-D]pyrimidin-7-One
pdb|3PJ3|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Methyl-5-[(E)-
(3-Phenyl-Acryloyl)amino]-N-(2-Phenyl-3h-Imidazo[4,
5-B]pyridin-6-Yl)- Benzamide
Length = 274
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 506 LAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASF 565
+A++ I E + +E + K + L H LV+L G + +I +Y++NGCL ++
Sbjct: 42 VAIKMIKEGSMSEDEFIE-EAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNY 100
Query: 566 SFTHASKFH 574
+F
Sbjct: 101 LREMRHRFQ 109
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 495 VYKAVLADGT-TLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLI 553
VY+ V + T+AV+ + E E +++ + + ++KHPNLV+L G + +I
Sbjct: 236 VYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 294
Query: 554 HDYVSNGCLASF 565
++++ G L +
Sbjct: 295 TEFMTYGNLLDY 306
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 486 ILCTSSSSIVYKAVLA-DGTTLAVRRIG-ETCFERLKDLESQVKAIAKLKHPNLVKLRGF 543
++ + ++++V A A +A++RI E C + +L +++A+++ HPN+V
Sbjct: 17 VIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTS 76
Query: 544 YWEDEEKLLIHDYVSNG 560
+ +E L+ +S G
Sbjct: 77 FVVKDELWLVMKLLSGG 93
>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex
With Inhibitor Cgi1746
Length = 271
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 506 LAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASF 565
+A++ I E + +E + K + L H LV+L G + +I +Y++NGCL ++
Sbjct: 36 VAIKMIKEGSMSEDEFIE-EAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNY 94
Query: 566 SFTHASKFH 574
+F
Sbjct: 95 LREMRHRFQ 103
>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain
pdb|1K2P|B Chain B, Crystal Structure Of Bruton's Tyrosine Kinase Domain
Length = 263
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 524 SQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTHASKFH 574
+ K + L H LV+L G + +I +Y++NGCL ++ +F
Sbjct: 48 EEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQ 98
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 5/131 (3%)
Query: 115 RHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAG 174
++LDLS N S FS ELQVL LS I + L L L+ N +
Sbjct: 33 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 175 KVPRNLTAVKSL-TVVSLRSNYFS-GSIPSG-FTSVEVLDLSSNLFNG-SLPLDFGG-GN 229
+ + SL +V++ +N S + P G +++ L+++ NL LP F N
Sbjct: 93 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 152
Query: 230 LRYLNLSYNKI 240
L +L+LS NKI
Sbjct: 153 LEHLDLSSNKI 163
>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
pdb|2JAM|B Chain B, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
Length = 304
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 503 GTTLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCL 562
G A++ I ++ R LE+++ + K+KH N+V L Y L+ VS G L
Sbjct: 34 GKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGEL 93
>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|B Chain B, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|C Chain C, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|D Chain D, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
Length = 319
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 503 GTTLAVRRIGETCFER--LKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNG 560
G +AV+ I +T L+ L +V+ + L HPN+VKL ++ L+ +Y S G
Sbjct: 32 GKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGG 91
Query: 561 CLASFSFTHA 570
+ + H
Sbjct: 92 EVFDYLVAHG 101
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 486 ILCTSSSSIVYKAVLA-DGTTLAVRRIG-ETCFERLKDLESQVKAIAKLKHPNLVKLRGF 543
++ + ++++V A A +A++RI E C + +L +++A+++ HPN+V
Sbjct: 22 VIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTS 81
Query: 544 YWEDEEKLLIHDYVSNG 560
+ +E L+ +S G
Sbjct: 82 FVVKDELWLVMKLLSGG 98
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 495 VYKAVLADGT-TLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLI 553
VY+ V + T+AV+ + E E +++ + + ++KHPNLV+L G + +I
Sbjct: 275 VYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 333
Query: 554 HDYVSNGCLASF 565
++++ G L +
Sbjct: 334 TEFMTYGNLLDY 345
>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r
In Complex With Dasatinib
Length = 265
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 524 SQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTHASKFH 574
+ K + L H LV+L G + +I +Y++NGCL ++ +F
Sbjct: 53 EEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQ 103
>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
pdb|2VZ6|B Chain B, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
Length = 313
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCL 562
+ LE + + LKHPN+V+L E+ LI D V+ G L
Sbjct: 66 QKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGEL 108
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 5/131 (3%)
Query: 115 RHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAG 174
++LDLS N S FS ELQVL LS I + L L L+ N +
Sbjct: 32 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 175 KVPRNLTAVKSL-TVVSLRSNYFS-GSIPSG-FTSVEVLDLSSNLFNG-SLPLDFGG-GN 229
+ + SL +V++ +N S + P G +++ L+++ NL LP F N
Sbjct: 92 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 151
Query: 230 LRYLNLSYNKI 240
L +L+LS NKI
Sbjct: 152 LEHLDLSSNKI 162
>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
pdb|2QNJ|B Chain B, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
Length = 328
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 503 GTTLAVRRIGETCFE--RLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNG 560
G +A++ I +T L+ L +V+ + L HPN+VKL ++ LI +Y S G
Sbjct: 37 GREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGG 96
Query: 561 CLASFSFTHA 570
+ + H
Sbjct: 97 EVFDYLVAHG 106
>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain
pdb|3P08|B Chain B, Crystal Structure Of The Human Btk Kinase Domain
Length = 267
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 524 SQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASFSFTHASKFH 574
+ K + L H LV+L G + +I +Y++NGCL ++ +F
Sbjct: 52 EEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQ 102
>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
pdb|3FE3|B Chain B, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
Length = 328
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 503 GTTLAVRRIGETCFE--RLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNG 560
G +A++ I +T L+ L +V+ + L HPN+VKL ++ LI +Y S G
Sbjct: 40 GREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGG 99
Query: 561 CLASFSFTHA 570
+ + H
Sbjct: 100 EVFDYLVAHG 109
>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain
pdb|4GT4|B Chain B, Structure Of Unliganded, Inactive Ror2 Kinase Domain
Length = 308
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 530 AKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASF 565
A+L+HPN+V L G +D+ +I Y S+G L F
Sbjct: 84 ARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEF 119
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 495 VYKAVLADGT-TLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLI 553
VY+ V + T+AV+ + E E +++ + + ++KHPNLV+L G + +I
Sbjct: 233 VYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 291
Query: 554 HDYVSNGCLASF 565
++++ G L +
Sbjct: 292 TEFMTYGNLLDY 303
>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|C Chain C, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|D Chain D, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|E Chain E, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|F Chain F, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|G Chain G, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|H Chain H, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
Length = 328
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 503 GTTLAVRRIGETCFE--RLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNG 560
G +AV+ I +T L+ L +V+ + L HPN+VKL ++ L+ +Y S G
Sbjct: 40 GREVAVKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLVMEYASGG 99
Query: 561 CLASFSFTHA 570
+ + H
Sbjct: 100 EVFDYLVAHG 109
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 5/131 (3%)
Query: 115 RHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAG 174
++LDLS N S FS ELQVL LS I + L L L+ N +
Sbjct: 32 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 175 KVPRNLTAVKSL-TVVSLRSNYFS-GSIPSG-FTSVEVLDLSSNLFNG-SLPLDFGG-GN 229
+ + SL +V++ +N S + P G +++ L+++ NL LP F N
Sbjct: 92 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 151
Query: 230 LRYLNLSYNKI 240
L +L+LS NKI
Sbjct: 152 LEHLDLSSNKI 162
>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2
pdb|3ZZW|B Chain B, Crystal Structure Of The Kinase Domain Of Ror2
Length = 289
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 530 AKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASF 565
A+L+HPN+V L G +D+ +I Y S+G L F
Sbjct: 67 ARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEF 102
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 502 DGTTLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFY 544
DG T +RR+ + E +VKA+AKL H N+V G +
Sbjct: 36 DGKTYVIRRVKYNN----EKAEREVKALAKLDHVNIVHYNGCW 74
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 28/189 (14%)
Query: 102 GSVTKDLGLI---QHLRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQ 158
G+ KD+G + +L LDL+NN + PLS T+L L L N IS P +
Sbjct: 226 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAG 281
Query: 159 IPRLQLLNLSVNALAGKVPRNLTAVKSLTVVSLRSNYFSGSIP-SGFTSVEVLDLSSNLF 217
+ L L L+ N L P ++ +K+LT ++L N S P S T ++ L S+N
Sbjct: 282 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKV 339
Query: 218 NGSLPLDFGGGNLRYLNLSYNKISGSISPEFAKRIPQ-----------------NVTIDL 260
+ L N+ +L+ +N+IS RI Q NV+I
Sbjct: 340 SDVSSL-ANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPN 398
Query: 261 SFNNLTGAI 269
+ N+TGA+
Sbjct: 399 TVKNVTGAL 407
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 111 IQHLRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVN 170
+ +L ++ SNN PL + T+L + ++NN I+ P + + L L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 171 ALAGKVP-RNLTAVKSLTVVSLRSNYFSG-SIPSGFTSVEVLDLSSNLFNGSLPLDFGGG 228
+ P +NLT + L L SN S S SG TS++ L SSN PL
Sbjct: 118 QITDIDPLKNLTNLNRL---ELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPL-ANLT 173
Query: 229 NLRYLNLSYNKIS 241
L L++S NK+S
Sbjct: 174 TLERLDISSNKVS 186
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 5/131 (3%)
Query: 115 RHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVNALAG 174
++LDLS N S FS ELQVL LS I + L L L+ N +
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 175 KVPRNLTAVKSL-TVVSLRSNYFS-GSIPSG-FTSVEVLDLSSNLFNG-SLPLDFGG-GN 229
+ + SL +V++ +N S + P G +++ L+++ NL LP F N
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150
Query: 230 LRYLNLSYNKI 240
L +L+LS NKI
Sbjct: 151 LEHLDLSSNKI 161
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 28/189 (14%)
Query: 102 GSVTKDLGLI---QHLRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQ 158
G+ KD+G + +L LDL+NN + PLS T+L L L N IS P +
Sbjct: 225 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAG 280
Query: 159 IPRLQLLNLSVNALAGKVPRNLTAVKSLTVVSLRSNYFSGSIP-SGFTSVEVLDLSSNLF 217
+ L L L+ N L P ++ +K+LT ++L N S P S T ++ L S+N
Sbjct: 281 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKV 338
Query: 218 NGSLPLDFGGGNLRYLNLSYNKISGSISPEFAKRIPQ-----------------NVTIDL 260
+ L N+ +L+ +N+IS RI Q NV+I
Sbjct: 339 SDVSSL-ANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPN 397
Query: 261 SFNNLTGAI 269
+ N+TGA+
Sbjct: 398 TVKNVTGAL 406
>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat
Length = 332
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 506 LAVRRIGETCFE-RLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCL 562
+A++ I + E + +E+++ + K+KHPN+V L Y LI VS G L
Sbjct: 46 VAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGEL 103
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 521 DLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNG 560
L +V+ + L+HPN+++L G++ + LI +Y G
Sbjct: 59 QLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPRG 98
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 111 IQHLRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLSVN 170
+ +L ++ SNN PL + T+L + ++NN I+ P + + L L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 171 ALAGKVP-RNLTAVKSLTVVSLRSNYFSG-SIPSGFTSVEVLDLSSNLFNGSLPLDFGGG 228
+ P +NLT + L L SN S S SG TS++ L SSN PL
Sbjct: 118 QITDIDPLKNLTNLNRL---ELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPL-ANLT 173
Query: 229 NLRYLNLSYNKIS 241
L L++S NK+S
Sbjct: 174 TLERLDISSNKVS 186
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 495 VYKAVLADGT-TLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLI 553
VY+ V + T+AV+ + E E +++ + + ++KHPNLV+L G + +I
Sbjct: 34 VYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 92
Query: 554 HDYVSNGCLASF 565
++++ G L +
Sbjct: 93 TEFMTYGNLLDY 104
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 495 VYKAVLADGT-TLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLI 553
VY+ V + T+AV+ + E E +++ + + ++KHPNLV+L G + +I
Sbjct: 34 VYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 92
Query: 554 HDYVSNGCLASF 565
++++ G L +
Sbjct: 93 TEFMTYGNLLDY 104
>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-293 In Complex With Atp
Length = 293
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 506 LAVRRIGETCFE-RLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCL 562
+A++ I + E + +E+++ + K+KHPN+V L Y LI VS G L
Sbjct: 46 VAIKCIAKEALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGEL 103
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 495 VYKAVLADGT-TLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLI 553
VY+ V + T+AV+ + E E +++ + + ++KHPNLV+L G + +I
Sbjct: 34 VYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 92
Query: 554 HDYVSNGCLASF 565
++++ G L +
Sbjct: 93 TEFMTYGNLLDY 104
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 521 DLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNG 560
L +V+ + L+HPN+++L G++ + LI +Y G
Sbjct: 59 QLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPRG 98
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 495 VYKAVLADGT-TLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLI 553
VY+ V + T+AV+ + E E +++ + + ++KHPNLV+L G + +I
Sbjct: 33 VYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 91
Query: 554 HDYVSNGCLASF 565
++++ G L +
Sbjct: 92 TEFMTYGNLLDY 103
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 495 VYKAVLADGT-TLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLI 553
VY+ V + T+AV+ + E E +++ + + ++KHPNLV+L G + +I
Sbjct: 30 VYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 88
Query: 554 HDYVSNGCLASF 565
++++ G L +
Sbjct: 89 TEFMTYGNLLDY 100
>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
pdb|4FG8|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
Length = 315
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 506 LAVRRIGETCFE-RLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCL 562
+A++ I + E + +E+++ + K+KHPN+V L Y LI VS G L
Sbjct: 46 VAIKCIAKEALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGEL 103
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 495 VYKAVLADGT-TLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLI 553
VY+ V + T+AV+ + E E +++ + + ++KHPNLV+L G + +I
Sbjct: 34 VYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 92
Query: 554 HDYVSNGCLASF 565
++++ G L +
Sbjct: 93 TEFMTYGNLLDY 104
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 137 ELQVLSLSNNAIS--GELPDLIGQIPRLQLLNLSVNALAGKVPRNLTAVKSLTVVSL 191
EL L+LSNN + ++ ++ + P L++LNLS N L K R L +K L + L
Sbjct: 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL--KSERELDKIKGLKLEEL 225
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 495 VYKAVLADGT-TLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLI 553
VY+ V + T+AV+ + E E +++ + + ++KHPNLV+L G + +I
Sbjct: 31 VYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 89
Query: 554 HDYVSNGCLASF 565
++++ G L +
Sbjct: 90 TEFMTYGNLLDY 101
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 495 VYKAVLADGT-TLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLI 553
VY+ V + T+AV+ + E E +++ + + ++KHPNLV+L G + +I
Sbjct: 29 VYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 87
Query: 554 HDYVSNGCLASF 565
++++ G L +
Sbjct: 88 TEFMTYGNLLDY 99
>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FG9|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FGB|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I Apo Form
Length = 320
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 506 LAVRRIGETCFE-RLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCL 562
+A++ I + E + +E+++ + K+KHPN+V L Y LI VS G L
Sbjct: 46 VAIKCIAKEALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGEL 103
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 495 VYKAVLADGT-TLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLI 553
VY+ V + T+AV+ + E E +++ + + ++KHPNLV+L G + +I
Sbjct: 29 VYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 87
Query: 554 HDYVSNGCLASF 565
++++ G L +
Sbjct: 88 TEFMTYGNLLDY 99
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 495 VYKAVLADGT-TLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLI 553
VY+ V + T+AV+ + E E +++ + + ++KHPNLV+L G + +I
Sbjct: 42 VYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 100
Query: 554 HDYVSNGCLASF 565
++++ G L +
Sbjct: 101 TEFMTYGNLLDY 112
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 495 VYKAVLADGT-TLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLI 553
VY+ V + T+AV+ + E E +++ + + ++KHPNLV+L G + +I
Sbjct: 29 VYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 87
Query: 554 HDYVSNGCLASF 565
++++ G L +
Sbjct: 88 TEFMTYGNLLDY 99
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 495 VYKAVLADGT-TLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLI 553
VY+ V + T+AV+ + E E +++ + + ++KHPNLV+L G + +I
Sbjct: 29 VYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 87
Query: 554 HDYVSNGCLASF 565
++++ G L +
Sbjct: 88 TEFMTYGNLLDY 99
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 495 VYKAVLADGT-TLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLI 553
VY+ V + T+AV+ + E E +++ + + ++KHPNLV+L G + +I
Sbjct: 27 VYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 85
Query: 554 HDYVSNGCLASF 565
++++ G L +
Sbjct: 86 TEFMTYGNLLDY 97
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 495 VYKAVLADGT-TLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLI 553
VY+ V + T+AV+ + E E +++ + + ++KHPNLV+L G + +I
Sbjct: 31 VYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 89
Query: 554 HDYVSNGCLASF 565
++++ G L +
Sbjct: 90 TEFMTYGNLLDY 101
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 495 VYKAVLADGT-TLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLI 553
VY+ V + T+AV+ + E E +++ + + ++KHPNLV+L G + +I
Sbjct: 27 VYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 85
Query: 554 HDYVSNGCLASF 565
++++ G L +
Sbjct: 86 TEFMTYGNLLDY 97
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 495 VYKAVLADGT-TLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLI 553
VY+ V + T+AV+ + E E +++ + + ++KHPNLV+L G + +I
Sbjct: 31 VYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 89
Query: 554 HDYVSNGCLASF 565
++++ G L +
Sbjct: 90 TEFMTYGNLLDY 101
>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
pdb|2YA9|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
pdb|2YAA|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Atp
pdb|2YAA|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Atp
pdb|2YAB|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Amp
pdb|2YAB|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Amp
Length = 361
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 520 KDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCLASF 565
+++E +V + ++ HPN++ L Y + +LI + VS G L F
Sbjct: 60 EEIEREVSILRQVLHPNIITLHDVYENRTDVVLILELVSGGELFDF 105
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 137 ELQVLSLSNNAIS--GELPDLIGQIPRLQLLNLSVNALAGKVPRNLTAVKSLTVVSL 191
EL L+LSNN + ++ ++ + P L++LNLS N L K R L +K L + L
Sbjct: 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL--KSERELDKIKGLKLEEL 225
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 13/88 (14%)
Query: 136 TELQVLSLSNNAISGELP----DLIGQIPRLQLLNLSVNALAGKVPRNLTAVKSLTVVSL 191
TEL L L+NN ++ LP D + Q+ +L L + +L V LT +K L L
Sbjct: 83 TELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL---RL 138
Query: 192 RSNYFSGSIPSG----FTSVEVLDLSSN 215
+N SIP+G T+++ L LS+N
Sbjct: 139 NTNQLQ-SIPAGAFDKLTNLQTLSLSTN 165
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 137 ELQVLSLSNNAIS--GELPDLIGQIPRLQLLNLSVNALAGKVPRNLTAVKSLTVVSL 191
EL L+LSNN + ++ ++ + P L++LNLS N L K R L +K L + L
Sbjct: 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL--KSERELDKIKGLKLEEL 225
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 13/88 (14%)
Query: 136 TELQVLSLSNNAISGELP----DLIGQIPRLQLLNLSVNALAGKVPRNLTAVKSLTVVSL 191
TEL L L+NN ++ LP D + Q+ +L L + +L V LT +K L L
Sbjct: 83 TELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL---RL 138
Query: 192 RSNYFSGSIPSG----FTSVEVLDLSSN 215
+N SIP+G T+++ L LS+N
Sbjct: 139 NTNQLQ-SIPAGAFDKLTNLQTLSLSTN 165
>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase
pdb|3COK|B Chain B, Crystal Structure Of Plk4 Kinase
Length = 278
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 495 VYKA-VLADGTTLAVRRIGETCFER---LKDLESQVKAIAKLKHPNLVKLRGFYWEDEEK 550
VY+A + G +A++ I + + ++ ++++VK +LKHP++++L ++ +
Sbjct: 27 VYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYV 86
Query: 551 LLIHDYVSNGCLASF 565
L+ + NG + +
Sbjct: 87 YLVLEMCHNGEMNRY 101
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 495 VYKAVLADGT-TLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLI 553
VY+ V + T+AV+ + E E +++ + + ++KHPNLV+L G + +I
Sbjct: 34 VYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 92
Query: 554 HDYVSNGCLASF 565
++++ G L +
Sbjct: 93 IEFMTYGNLLDY 104
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 137 ELQVLSLSNNAIS--GELPDLIGQIPRLQLLNLSVNALAGKVPRNLTAVKSLTVVSL 191
EL L+LSNN + ++ ++ + P L++LNLS N L K R L +K L + L
Sbjct: 165 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL--KSERELDKIKGLKLEEL 219
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 137 ELQVLSLSNNAIS--GELPDLIGQIPRLQLLNLSVNALAGKVPRNLTAVKSLTVVSL 191
EL L+LSNN + ++ ++ + P L++LNLS N L K R L +K L + L
Sbjct: 165 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL--KSERELDKIKGLKLEEL 219
>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
pdb|1Y8G|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
Length = 327
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 503 GTTLAVRRIGETCFER--LKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNG 560
G +AV+ I +T L+ L +V+ L HPN+VKL ++ L+ +Y S G
Sbjct: 39 GKEVAVKIIDKTQLNSSSLQKLFREVRIXKVLNHPNIVKLFEVIETEKTLYLVXEYASGG 98
Query: 561 CLASFSFTHA 570
+ + H
Sbjct: 99 EVFDYLVAHG 108
>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156.
pdb|2X4F|B Chain B, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156
Length = 373
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 33/62 (53%)
Query: 501 ADGTTLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNG 560
A G LA + I + +++++++ + +L H NL++L + + +L+ +YV G
Sbjct: 112 ATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGG 171
Query: 561 CL 562
L
Sbjct: 172 EL 173
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 495 VYKAVLADGT-TLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLI 553
VY+ V + T+AV+ + E E +++ + + ++KHPNLV+L G + +I
Sbjct: 30 VYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 88
Query: 554 HDYVSNGCLASF 565
++++ G L +
Sbjct: 89 IEFMTYGNLLDY 100
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 495 VYKAVLADGT-TLAVRRIGETCFERLKDLESQVKAIAKLKHPNLVKLRGFYWEDEEKLLI 553
VY+ V + T+AV+ + E E +++ + + ++KHPNLV+L G + +I
Sbjct: 27 VYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 85
Query: 554 HDYVSNGCLASF 565
++++ G L +
Sbjct: 86 IEFMTYGNLLDY 97
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 522 LESQVKAIAKLKHPNLVKLRGFYWEDEEKLLIHDYVSNGCL 562
L +V+ + L+HPN+++L G++ + LI +Y G +
Sbjct: 55 LRREVEIQSHLRHPNILRLYGYFHDSTRVYLILEYAPLGTV 95
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 109 GLIQHLRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLS 168
GL L L L N S+ L L LS N+IS + P L+ L+L+
Sbjct: 189 GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248
Query: 169 VNALAGKVPRNLTAVKSLTVVSLRSNYFSG 198
N L KVP L K + VV L +N S
Sbjct: 249 NNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 109 GLIQHLRHLDLSNNFFNGSLPLSIFSATELQVLSLSNNAISGELPDLIGQIPRLQLLNLS 168
GL L L L N S+ L L LS N+IS + P L+ L+L+
Sbjct: 189 GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248
Query: 169 VNALAGKVPRNLTAVKSLTVVSLRSNYFSG 198
N L KVP L K + VV L +N S
Sbjct: 249 NNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
pdb|2JC6|C Chain C, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
Length = 334
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 475 EVETLFKASAYILCTSSSSIVYKAVLADGTTLAVRRIGETCFE-RLKDLESQVKAIAKLK 533
+++ +F+ + + S +V A G AV+ I + + + +E+++ + K+K
Sbjct: 19 DIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIK 78
Query: 534 HPNLVKLRGFYWEDEEKLLIHDYVSNGCL 562
H N+V L Y L+ VS G L
Sbjct: 79 HENIVALEDIYESPNHLYLVMQLVSGGEL 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,077,996
Number of Sequences: 62578
Number of extensions: 634493
Number of successful extensions: 2248
Number of sequences better than 100.0: 305
Number of HSP's better than 100.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 158
Number of HSP's that attempted gapping in prelim test: 1851
Number of HSP's gapped (non-prelim): 434
length of query: 586
length of database: 14,973,337
effective HSP length: 104
effective length of query: 482
effective length of database: 8,465,225
effective search space: 4080238450
effective search space used: 4080238450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)