BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043707
(347 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 92/198 (46%), Gaps = 31/198 (15%)
Query: 133 GDLLYTGSDSKNIRVWKNLKEFSGF-------KSNSGLVKAIIITGDSNKIFTGHQDGKI 185
D++ + S K+I +WK K+ + +S V+ ++++ D +G DG++
Sbjct: 395 ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454
Query: 186 RIWKVSRKNPSVHKRVGSLPTFKDY--VKSSVNPKNYVEVRRNRNVLKIR---------- 233
R+W ++ S + VG KD V S++ + V R+R +
Sbjct: 455 RLWDLA-AGVSTRRFVGHT---KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS 510
Query: 234 -----HYDAVSCL--SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG 286
H D VSC+ S N Q + S SWDKT+KVW +S+CK ++ H +++V
Sbjct: 511 EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS 570
Query: 287 FD-SLVFTGSADGTVKVW 303
D SL +G DG V +W
Sbjct: 571 PDGSLCASGGKDGVVLLW 588
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 170 TGDSNKIFTGHQDGKIRIWKVSR 192
+ D + +F+G+ DG IR+W + R
Sbjct: 671 SADGSTLFSGYTDGVIRVWGIGR 693
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 136 LYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSR 192
+ + S K ++VW N K S ++G V + ++ D + +G +DG + +W ++
Sbjct: 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 41/177 (23%)
Query: 133 GDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
G+ L + S K I++W K K SG K + + + DSN + + D ++I
Sbjct: 57 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDKTLKI 113
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ 247
W VS L T K H + V C + N +
Sbjct: 114 WDVSSGK--------CLKTLKG------------------------HSNYVFCCNFNPQS 141
Query: 248 GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVW 303
L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++W
Sbjct: 142 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 98/256 (38%), Gaps = 54/256 (21%)
Query: 124 GH---IYSLAASGD--LLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKI 176
GH I +A S D LL + SD K +++W + K K +S V SN I
Sbjct: 85 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 144
Query: 177 FTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYD 236
+G D +RIW V K + +LP D P + V R+ +++ YD
Sbjct: 145 VSGSFDESVRIWDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYD 192
Query: 237 A-----------------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI 273
VS + + + + + D TLK+W S KCL++
Sbjct: 193 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 252
Query: 274 NAHDDAINSVVAGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLK 322
H + + A F + +GS D V +W ++LQG T ++
Sbjct: 253 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHP 311
Query: 323 QENAITALAVNQESAV 338
EN I + A+ + +
Sbjct: 312 TENIIASAALENDKTI 327
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 86 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 143
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
+ +GS D +V++W + GK K L + ++A+ N++ +++ S DGL
Sbjct: 144 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 194
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H AVS + + L S S DK +K+W D K ++I+ H I+ V DS L+
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 293 TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345
+ S D T+K+W GK K L N + N +S ++ GS D
Sbjct: 104 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFD 150
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 41/177 (23%)
Query: 133 GDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
G+ L + S K I++W K K SG K + + + DSN + + D ++I
Sbjct: 59 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDKTLKI 115
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ 247
W VS L T K H + V C + N +
Sbjct: 116 WDVSSGK--------CLKTLKG------------------------HSNYVFCCNFNPQS 143
Query: 248 GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVW 303
L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++W
Sbjct: 144 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 200
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 98/256 (38%), Gaps = 54/256 (21%)
Query: 124 GH---IYSLAASGD--LLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKI 176
GH I +A S D LL + SD K +++W + K K +S V SN I
Sbjct: 87 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 146
Query: 177 FTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYD 236
+G D +RIW V K + +LP D P + V R+ +++ YD
Sbjct: 147 VSGSFDESVRIWDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYD 194
Query: 237 A-----------------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI 273
VS + + + + + D TLK+W S KCL++
Sbjct: 195 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 254
Query: 274 NAHDDAINSVVAGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLK 322
H + + A F + +GS D V +W ++LQG T ++
Sbjct: 255 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHP 313
Query: 323 QENAITALAVNQESAV 338
EN I + A+ + +
Sbjct: 314 TENIIASAALENDKTI 329
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 88 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 145
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
+ +GS D +V++W + GK K L + ++A+ N++ +++ S DGL
Sbjct: 146 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 196
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H AVS + + L S S DK +K+W D K ++I+ H I+ V DS L+
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 105
Query: 293 TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345
+ S D T+K+W GK K L N + N +S ++ GS D
Sbjct: 106 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFD 152
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 100/224 (44%), Gaps = 28/224 (12%)
Query: 106 ENLLSSCNGLIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWKNLKEFSGF----- 157
+++++ L G++ G + +A + D++ + S K I +WK ++ + +
Sbjct: 21 QSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQR 80
Query: 158 --KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSV 215
+ +S V ++I+ D +G DG +R+W ++ + + VG SS
Sbjct: 81 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT-TGTTTRRFVGHTKDVLSVAFSSD 139
Query: 216 NPKNYVEVRRNR-----NVLKI--------RHYDAVSCLSL--NAEQGLLYSGSWDKTLK 260
N + V R++ N L + H + VSC+ N+ ++ S WDK +K
Sbjct: 140 N-RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 198
Query: 261 VWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVW 303
VW +++CK + H +N+V D SL +G DG +W
Sbjct: 199 VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 41/181 (22%)
Query: 129 LAASGDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDG 183
+ +G+ L + S K I++W K K SG K + + + DSN + + D
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDK 93
Query: 184 KIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSL 243
++IW VS L T K H + V C +
Sbjct: 94 TLKIWDVSSGK--------CLKTLKG------------------------HSNYVFCCNF 121
Query: 244 NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKV 302
N + L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 303 W 303
W
Sbjct: 182 W 182
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 96/251 (38%), Gaps = 51/251 (20%)
Query: 126 IYSLAASGD--LLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQ 181
I +A S D LL + SD K +++W + K K +S V SN I +G
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 182 DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA---- 237
D +RIW V K + +LP D P + V R+ +++ YD
Sbjct: 134 DESVRIWDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 238 -------------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD 278
VS + + + + + D TLK+W S KCL++ H +
Sbjct: 182 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 241
Query: 279 AINSVVAGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLKQENAI 327
+ A F + +GS D V +W ++LQG T ++ EN I
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENII 300
Query: 328 TALAVNQESAV 338
+ A+ + +
Sbjct: 301 ASAALENDKTI 311
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 127
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
+ +GS D +V++W + GK K L + ++A+ N++ +++ S DGL
Sbjct: 128 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 178
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H AVS + + L S S DK +K+W D K ++I+ H I+ V DS L+
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 293 TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345
+ S D T+K+W GK K L N + N +S ++ GS D
Sbjct: 88 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFD 134
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 41/177 (23%)
Query: 133 GDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
G+ L + S K I++W K K SG K + + + DSN + + D ++I
Sbjct: 41 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDKTLKI 97
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ 247
W VS L T K H + V C + N +
Sbjct: 98 WDVSSGK--------CLKTLKG------------------------HSNYVFCCNFNPQS 125
Query: 248 GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVW 303
L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++W
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 94/245 (38%), Gaps = 49/245 (20%)
Query: 130 AASGDLLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
++ +LL + SD K +++W + K K +S V SN I +G D +RI
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA---------- 237
W V K + +LP D P + V R+ +++ YD
Sbjct: 140 WDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
VS + + + + + D TLK+W S KCL++ H + +
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 247
Query: 285 AGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLKQENAITALAVN 333
A F + +GS D V +W ++LQG T ++ EN I + A+
Sbjct: 248 ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENIIASAALE 306
Query: 334 QESAV 338
+ +
Sbjct: 307 NDKTI 311
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 127
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
+ +GS D +V++W + GK K A + ++A+ N++ +++ S DGL
Sbjct: 128 IVSGSFDESVRIWDVK-TGKCLKTLPA-----HSDPVSAVHFNRDGSLIVSSSYDGL 178
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H AVS + + L S S DK +K+W D K ++I+ H I+ V DS L+
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 293 TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345
+ S D T+K+W GK K L N + N +S ++ GS D
Sbjct: 88 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFD 134
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 86/193 (44%), Gaps = 25/193 (12%)
Query: 134 DLLYTGSDSKNIRVWKNLKEFSGF-------KSNSGLVKAIIITGDSNKIFTGHQDGKIR 186
D++ + S K I +WK ++ + + + +S V ++I+ D +G DG +R
Sbjct: 29 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 88
Query: 187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNR-----NVLKI--------R 233
+W ++ + + VG SS N + V R++ N L +
Sbjct: 89 LWDLT-TGTTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQDES 146
Query: 234 HYDAVSCLSL--NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SL 290
H + VSC+ N+ ++ S WDK +KVW +++CK + H +N+V D SL
Sbjct: 147 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL 206
Query: 291 VFTGSADGTVKVW 303
+G DG +W
Sbjct: 207 CASGGKDGQAMLW 219
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 41/177 (23%)
Query: 133 GDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
G+ L + S K I++W K K SG K + + + DSN + + D ++I
Sbjct: 52 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDKTLKI 108
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ 247
W VS L T K H + V C + N +
Sbjct: 109 WDVSSGK--------CLKTLKG------------------------HSNYVFCCNFNPQS 136
Query: 248 GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVW 303
L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++W
Sbjct: 137 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 81 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 138
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
+ +GS D +V++W + GK K L + ++A+ N++ +++ S DGL
Sbjct: 139 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 189
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 94/245 (38%), Gaps = 49/245 (20%)
Query: 130 AASGDLLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
++ +LL + SD K +++W + K K +S V SN I +G D +RI
Sbjct: 91 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 150
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA---------- 237
W V K + +LP D P + V R+ +++ YD
Sbjct: 151 WDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 198
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
VS + + + + + D TLK+W S KCL++ H + +
Sbjct: 199 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 258
Query: 285 AGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLKQENAITALAVN 333
A F + +GS D V +W ++LQG T ++ EN I + A+
Sbjct: 259 ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENIIASAALE 317
Query: 334 QESAV 338
+ +
Sbjct: 318 NDKTI 322
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H AVS + + L S S DK +K+W D K ++I+ H I+ V DS L+
Sbjct: 39 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 98
Query: 293 TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345
+ S D T+K+W GK K L N + N +S ++ GS D
Sbjct: 99 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFD 145
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 41/177 (23%)
Query: 133 GDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
G+ L + S K I++W K K SG K + + + DSN + + D ++I
Sbjct: 35 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDKTLKI 91
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ 247
W VS L T K H + V C + N +
Sbjct: 92 WDVSSGK--------CLKTLKG------------------------HSNYVFCCNFNPQS 119
Query: 248 GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVW 303
L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++W
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 121
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
+ +GS D +V++W + GK K L + ++A+ N++ +++ S DGL
Sbjct: 122 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 172
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 96/251 (38%), Gaps = 51/251 (20%)
Query: 126 IYSLAASGD--LLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQ 181
I +A S D LL + SD K +++W + K K +S V SN I +G
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 182 DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA---- 237
D +RIW V K + +LP D P + V R+ +++ YD
Sbjct: 128 DESVRIWDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRI 175
Query: 238 -------------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD 278
VS + + + + + D TLK+W S KCL++ H +
Sbjct: 176 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235
Query: 279 AINSVVAGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLKQENAI 327
+ A F + +GS D V +W ++LQG T ++ EN I
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENII 294
Query: 328 TALAVNQESAV 338
+ A+ + +
Sbjct: 295 ASAALENDKTI 305
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H AVS + + L S S DK +K+W D K ++I+ H I+ V DS L+
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 293 TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345
+ S D T+K+W GK K L N + N +S ++ GS D
Sbjct: 82 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFD 128
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 41/177 (23%)
Query: 133 GDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
G+ L + S K I++W K K SG K + + + DSN + + D ++I
Sbjct: 41 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDKTLKI 97
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ 247
W VS L T K H + V C + N +
Sbjct: 98 WDVSSGK--------CLKTLKG------------------------HSNYVFCCNFNPQS 125
Query: 248 GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVW 303
L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++W
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 127
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
+ +GS D +V++W + GK K L + ++A+ N++ +++ S DGL
Sbjct: 128 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 178
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 96/251 (38%), Gaps = 51/251 (20%)
Query: 126 IYSLAASGD--LLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQ 181
I +A S D LL + SD K +++W + K K +S V SN I +G
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 182 DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA---- 237
D +RIW V K + +LP D P + V R+ +++ YD
Sbjct: 134 DESVRIWDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 238 -------------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD 278
VS + + + + + D TLK+W S KCL++ H +
Sbjct: 182 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 241
Query: 279 AINSVVAGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLKQENAI 327
+ A F + +GS D V +W ++LQG T ++ EN I
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENII 300
Query: 328 TALAVNQESAV 338
+ A+ + +
Sbjct: 301 ASAALENDKTI 311
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H AVS + + L S S DK +K+W D K ++I+ H I+ V DS L+
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 293 TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345
+ S D T+K+W GK K L N + N +S ++ GS D
Sbjct: 88 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFD 134
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 41/177 (23%)
Query: 133 GDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
G+ L + S K I++W K K SG K + + + DSN + + D ++I
Sbjct: 40 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDKTLKI 96
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ 247
W VS L T K H + V C + N +
Sbjct: 97 WDVSSGK--------CLKTLKG------------------------HSNYVFCCNFNPQS 124
Query: 248 GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVW 303
L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++W
Sbjct: 125 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 69 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 126
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
+ +GS D +V++W + GK K L + ++A+ N++ +++ S DGL
Sbjct: 127 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 177
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 96/251 (38%), Gaps = 51/251 (20%)
Query: 126 IYSLAASGD--LLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQ 181
I +A S D LL + SD K +++W + K K +S V SN I +G
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 132
Query: 182 DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA---- 237
D +RIW V K + +LP D P + V R+ +++ YD
Sbjct: 133 DESVRIWDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRI 180
Query: 238 -------------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD 278
VS + + + + + D TLK+W S KCL++ H +
Sbjct: 181 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 240
Query: 279 AINSVVAGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLKQENAI 327
+ A F + +GS D V +W ++LQG T ++ EN I
Sbjct: 241 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENII 299
Query: 328 TALAVNQESAV 338
+ A+ + +
Sbjct: 300 ASAALENDKTI 310
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H AVS + + L S S DK +K+W D K ++I+ H I+ V DS L+
Sbjct: 27 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 86
Query: 293 TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345
+ S D T+K+W GK K L N + N +S ++ GS D
Sbjct: 87 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFD 133
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 41/177 (23%)
Query: 133 GDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
G+ L + S K I++W K K SG K + + + DSN + + D ++I
Sbjct: 35 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDKTLKI 91
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ 247
W VS L T K H + V C + N +
Sbjct: 92 WDVSSGK--------CLKTLKG------------------------HSNYVFCCNFNPQS 119
Query: 248 GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVW 303
L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++W
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 121
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
+ +GS D +V++W + GK K L + ++A+ N++ +++ S DGL
Sbjct: 122 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 172
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 94/245 (38%), Gaps = 49/245 (20%)
Query: 130 AASGDLLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
++ +LL + SD K +++W + K K +S V SN I +G D +RI
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA---------- 237
W V K + +LP D P + V R+ +++ YD
Sbjct: 134 WDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
VS + + + + + D TLK+W S KCL++ H + +
Sbjct: 182 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 241
Query: 285 AGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLKQENAITALAVN 333
A F + +GS D V +W ++LQG T ++ EN I + A+
Sbjct: 242 ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENIIASAALE 300
Query: 334 QESAV 338
+ +
Sbjct: 301 NDKTI 305
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H AVS + + L S S DK +K+W D K ++I+ H I+ V DS L+
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 293 TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345
+ S D T+K+W GK K L N + N +S ++ GS D
Sbjct: 82 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFD 128
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 41/177 (23%)
Query: 133 GDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
G+ L + S K I++W K K SG K + + + DSN + + D ++I
Sbjct: 36 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDKTLKI 92
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ 247
W VS L T K H + V C + N +
Sbjct: 93 WDVSSGK--------CLKTLKG------------------------HSNYVFCCNFNPQS 120
Query: 248 GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVW 303
L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++W
Sbjct: 121 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 177
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 65 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 122
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
+ +GS D +V++W + GK K L + ++A+ N++ +++ S DGL
Sbjct: 123 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 173
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 96/251 (38%), Gaps = 51/251 (20%)
Query: 126 IYSLAASGD--LLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQ 181
I +A S D LL + SD K +++W + K K +S V SN I +G
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 128
Query: 182 DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA---- 237
D +RIW V K + +LP D P + V R+ +++ YD
Sbjct: 129 DESVRIWDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRI 176
Query: 238 -------------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD 278
VS + + + + + D TLK+W S KCL++ H +
Sbjct: 177 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 236
Query: 279 AINSVVAGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLKQENAI 327
+ A F + +GS D V +W ++LQG T ++ EN I
Sbjct: 237 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENII 295
Query: 328 TALAVNQESAV 338
+ A+ + +
Sbjct: 296 ASAALENDKTI 306
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H AVS + + L S S DK +K+W D K ++I+ H I+ V DS L+
Sbjct: 23 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 82
Query: 293 TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345
+ S D T+K+W GK K L N + N +S ++ GS D
Sbjct: 83 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFD 129
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 41/177 (23%)
Query: 133 GDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
G+ L + S K I++W K K SG K + + + DSN + + D ++I
Sbjct: 34 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDKTLKI 90
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ 247
W VS L T K H + V C + N +
Sbjct: 91 WDVSSGK--------CLKTLKG------------------------HSNYVFCCNFNPQS 118
Query: 248 GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVW 303
L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++W
Sbjct: 119 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 63 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 120
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
+ +GS D +V++W + GK K L + ++A+ N++ +++ S DGL
Sbjct: 121 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 171
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 94/245 (38%), Gaps = 49/245 (20%)
Query: 130 AASGDLLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
++ +LL + SD K +++W + K K +S V SN I +G D +RI
Sbjct: 73 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 132
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA---------- 237
W V K + +LP D P + V R+ +++ YD
Sbjct: 133 WDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
VS + + + + + D TLK+W S KCL++ H + +
Sbjct: 181 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 240
Query: 285 AGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLKQENAITALAVN 333
A F + +GS D V +W ++LQG T ++ EN I + A+
Sbjct: 241 ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENIIASAALE 299
Query: 334 QESAV 338
+ +
Sbjct: 300 NDKTI 304
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H AVS + + L S S DK +K+W D K ++I+ H I+ V DS L+
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 80
Query: 293 TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345
+ S D T+K+W GK K L N + N +S ++ GS D
Sbjct: 81 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFD 127
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 41/177 (23%)
Query: 133 GDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
G+ L + S K I++W K K SG K + + + DSN + + D ++I
Sbjct: 31 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDKTLKI 87
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ 247
W VS L T K H + V C + N +
Sbjct: 88 WDVSSGK--------CLKTLKG------------------------HSNYVFCCNFNPQS 115
Query: 248 GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVW 303
L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++W
Sbjct: 116 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 60 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 117
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
+ +GS D +V++W + GK K L + ++A+ N++ +++ S DGL
Sbjct: 118 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 168
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 96/251 (38%), Gaps = 51/251 (20%)
Query: 126 IYSLAASGD--LLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQ 181
I +A S D LL + SD K +++W + K K +S V SN I +G
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 123
Query: 182 DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA---- 237
D +RIW V K + +LP D P + V R+ +++ YD
Sbjct: 124 DESVRIWDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRI 171
Query: 238 -------------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD 278
VS + + + + + D TLK+W S KCL++ H +
Sbjct: 172 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 231
Query: 279 AINSVVAGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLKQENAI 327
+ A F + +GS D V +W ++LQG T ++ EN I
Sbjct: 232 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENII 290
Query: 328 TALAVNQESAV 338
+ A+ + +
Sbjct: 291 ASAALENDKTI 301
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H AVS + + L S S DK +K+W D K ++I+ H I+ V DS L+
Sbjct: 18 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 77
Query: 293 TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345
+ S D T+K+W GK K L N + N +S ++ GS D
Sbjct: 78 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFD 124
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 41/177 (23%)
Query: 133 GDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
G+ L + S K I++W K K SG K + + + DSN + + D ++I
Sbjct: 38 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDKTLKI 94
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ 247
W VS L T K H + V C + N +
Sbjct: 95 WDVSSGK--------CLKTLKG------------------------HSNYVFCCNFNPQS 122
Query: 248 GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVW 303
L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++W
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 124
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
+ +GS D +V++W + GK K L + ++A+ N++ +++ S DGL
Sbjct: 125 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 175
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 94/245 (38%), Gaps = 49/245 (20%)
Query: 130 AASGDLLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
++ +LL + SD K +++W + K K +S V SN I +G D +RI
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA---------- 237
W V K + +LP D P + V R+ +++ YD
Sbjct: 137 WDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
VS + + + + + D TLK+W S KCL++ H + +
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 285 AGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLKQENAITALAVN 333
A F + +GS D V +W ++LQG T ++ EN I + A+
Sbjct: 245 ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENIIASAALE 303
Query: 334 QESAV 338
+ +
Sbjct: 304 NDKTI 308
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H AVS + + L S S DK +K+W D K ++I+ H I+ V DS L+
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 293 TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345
+ S D T+K+W GK K L N + N +S ++ GS D
Sbjct: 85 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFD 131
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 41/177 (23%)
Query: 133 GDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
G+ L + S K I++W K K SG K + + + DSN + + D ++I
Sbjct: 38 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDKTLKI 94
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ 247
W VS L T K H + V C + N +
Sbjct: 95 WDVSSGK--------CLKTLKG------------------------HSNYVFCCNFNPQS 122
Query: 248 GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVW 303
L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++W
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 124
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
+ +GS D +V++W + GK K L + ++A+ N++ +++ S DGL
Sbjct: 125 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 175
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 94/245 (38%), Gaps = 49/245 (20%)
Query: 130 AASGDLLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
++ +LL + SD K +++W + K K +S V SN I +G D +RI
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA---------- 237
W V K + +LP D P + V R+ +++ YD
Sbjct: 137 WDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
VS + + + + + D TLK+W S KCL++ H + +
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 285 AGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLKQENAITALAVN 333
A F + +GS D V +W ++LQG T ++ EN I + A+
Sbjct: 245 ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENIIASAALE 303
Query: 334 QESAV 338
+ +
Sbjct: 304 NDKTI 308
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H AVS + + L S S DK +K+W D K ++I+ H I+ V DS L+
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 293 TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345
+ S D T+K+W GK K L N + N +S ++ GS D
Sbjct: 85 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFD 131
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 89/190 (46%), Gaps = 17/190 (8%)
Query: 123 EGHIYSLA-ASGDLLYTGSDSKNIRVWKNLKEFSG--FKSNSGLVKAIIITGDSN--KIF 177
+G +++L A G +L +GS + +RVW K F+ ++ V+ + I N I
Sbjct: 162 DGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV 221
Query: 178 TGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA 237
TG +D + +WK+ +++ S+P D+ + P + N + +
Sbjct: 222 TGSRDNTLHVWKLPKES--------SVP---DHGEEHDYPLVFHTPEENPYFVGVLRGHM 270
Query: 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSA 296
S +++ ++ SGS+D TL VW ++ KCL ++ H D I S + + + S
Sbjct: 271 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM 330
Query: 297 DGTVKVWRRE 306
D T+++W E
Sbjct: 331 DTTIRIWDLE 340
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 189 KVSRKNPSVHKRVGSLPTFKD---YVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA 245
K+S+K P + ++ +F + +K+ NPK + R L+ ++CL
Sbjct: 77 KLSQKYPKLSQQDRLRLSFLENIFILKNWYNPKFVPQ----RTTLRGHMTSVITCLQF-- 130
Query: 246 EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVW 303
E + +G+ DK ++V+ + K L ++ HD + ++ ++ +GS D TV+VW
Sbjct: 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVW 188
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 41/177 (23%)
Query: 133 GDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
G+ L S K I++W K K SG K + + + DSN + + D ++I
Sbjct: 38 GEWLAASSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDKTLKI 94
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ 247
W VS L T K H + V C + N +
Sbjct: 95 WDVSSGK--------CLKTLKG------------------------HSNYVFCCNFNPQS 122
Query: 248 GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVW 303
L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++W
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 124
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
+ +GS D +V++W + GK K L + ++A+ N++ +++ S DGL
Sbjct: 125 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 175
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 96/251 (38%), Gaps = 51/251 (20%)
Query: 126 IYSLAASGD--LLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQ 181
I +A S D LL + SD K +++W + K K +S V SN I +G
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 182 DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA---- 237
D +RIW V K + +LP D P + V R+ +++ YD
Sbjct: 131 DESVRIWDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 238 -------------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD 278
VS + + + + + D TLK+W S KCL++ H +
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 279 AINSVVAGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLKQENAI 327
+ A F + +GS D V +W ++LQG T ++ EN I
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENII 297
Query: 328 TALAVNQESAV 338
+ A+ + +
Sbjct: 298 ASAALENDKTI 308
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H AVS + + L + S DK +K+W D K ++I+ H I+ V DS L+
Sbjct: 25 HTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 293 TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345
+ S D T+K+W GK K L N + N +S ++ GS D
Sbjct: 85 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFD 131
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 46/209 (22%)
Query: 101 PYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVW-----KNLKEFS 155
P PN L+ + G ++ + + +G+ L + S K I++W K K S
Sbjct: 11 PVKPNYALMFTLAGHTKAVSSVK-----FSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 65
Query: 156 GFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSV 215
G K + + + DSN + + D ++IW VS L T K
Sbjct: 66 GHKLG---ISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--------CLKTLKG------ 108
Query: 216 NPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA 275
H + V C + N + L+ SGS+D+++++W + CL+++ A
Sbjct: 109 ------------------HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPA 150
Query: 276 HDDAINSVVAGFD-SLVFTGSADGTVKVW 303
H D +++V D SL+ + S DG ++W
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 124
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
+ +GS D +V++W + + L + ++A+ N++ +++ S DGL
Sbjct: 125 IVSGSFDESVRIWDVKTG------MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 175
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 97/256 (37%), Gaps = 54/256 (21%)
Query: 124 GH---IYSLAASGD--LLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIITGDSNKI 176
GH I +A S D LL + SD K +++W + K K +S V SN I
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 177 FTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYD 236
+G D +RIW V + +LP D P + V R+ +++ YD
Sbjct: 126 VSGSFDESVRIWDVK-----TGMCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYD 173
Query: 237 A-----------------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI 273
VS + + + + + D TLK+W S KCL++
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 274 NAHDDAINSVVAGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLK 322
H + + A F + +GS D V +W ++LQG T ++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH-TDVVISTACHP 292
Query: 323 QENAITALAVNQESAV 338
EN I + A+ + +
Sbjct: 293 TENIIASAALENDKTI 308
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H AVS + + L S S DK +K+W D K ++I+ H I+ V DS L+
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 293 TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345
+ S D T+K+W GK K L N + N +S ++ GS D
Sbjct: 85 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFD 131
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 46/209 (22%)
Query: 101 PYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVW-----KNLKEFS 155
P PN L+ + G ++ + + +G+ L + S K I++W K K S
Sbjct: 11 PVKPNYALMFTLAGHTKAVSSVK-----FSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 65
Query: 156 GFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSV 215
G K + + + DSN + + D ++IW VS L T K
Sbjct: 66 GHKLG---ISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--------CLKTLKG------ 108
Query: 216 NPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA 275
H + V C + N + L+ SGS+D+++++W + CL+++ A
Sbjct: 109 ------------------HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPA 150
Query: 276 HDDAINSVVAGFD-SLVFTGSADGTVKVW 303
H D +++V D SL+ + S DG ++W
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 124
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
+ +GS D +V++W + + L + ++A+ N++ +++ S DGL
Sbjct: 125 IVSGSFDESVRIWDVKTG------MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 175
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 96/256 (37%), Gaps = 54/256 (21%)
Query: 124 GH---IYSLAASGD--LLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKI 176
GH I +A S D LL + SD K +++W + K K +S V SN I
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 177 FTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYD 236
+G D +RIW V + +LP D P + V R+ +++ YD
Sbjct: 126 VSGSFDESVRIWDVK-----TGMCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYD 173
Query: 237 A-----------------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI 273
VS + + + + + D LK+W S KCL++
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTY 233
Query: 274 NAHDDAINSVVAGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLK 322
H + + A F + +GS D V +W ++LQG T ++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH-TDVVISTACHP 292
Query: 323 QENAITALAVNQESAV 338
EN I + A+ + +
Sbjct: 293 TENIIASAALENDKTI 308
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H AVS + + L S S DK +K+W D K ++I+ H I+ V DS L+
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 293 TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345
+ S D T+K+W GK K L N + N +S ++ GS D
Sbjct: 85 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFD 131
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 89/190 (46%), Gaps = 17/190 (8%)
Query: 123 EGHIYSLA-ASGDLLYTGSDSKNIRVWKNLKEFSG--FKSNSGLVKAIIITGDSN--KIF 177
+G +++L A G +L +GS + +RVW K F+ ++ V+ + I N I
Sbjct: 162 DGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV 221
Query: 178 TGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA 237
TG +D + +WK+ +++ S+P D+ + P + N + +
Sbjct: 222 TGSRDNTLHVWKLPKES--------SVP---DHGEEHDYPLVFHTPEENPYFVGVLRGHX 270
Query: 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSA 296
S +++ ++ SGS+D TL VW ++ KCL ++ H D I S + + + S
Sbjct: 271 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASX 330
Query: 297 DGTVKVWRRE 306
D T+++W E
Sbjct: 331 DTTIRIWDLE 340
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 189 KVSRKNPSVHKRVGSLPTFKD---YVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA 245
K+S+K P + ++ +F + +K+ NPK + R L+ ++CL
Sbjct: 77 KLSQKYPKLSQQDRLRLSFLENIFILKNWYNPKFVPQ----RTTLRGHXTSVITCLQF-- 130
Query: 246 EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVW 303
E + +G+ DK ++V+ + K L ++ HD + ++ ++ +GS D TV+VW
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVW 188
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 100/238 (42%), Gaps = 55/238 (23%)
Query: 128 SLAASGDLLYTGSDSKNIRVWK-----NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQD 182
S+ +GD + + S K I++W+ +K F+G + V+ + D I + D
Sbjct: 199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE---WVRMVRPNQDGTLIASCSND 255
Query: 183 GKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLS 242
+R+W V+ K E+R +R+V++ + S S
Sbjct: 256 QTVRVWVVATKECKA------------------------ELREHRHVVECISWAPESSYS 291
Query: 243 LNAEQG------------LLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS- 289
+E L SGS DKT+K+W +S CL ++ HD+ + V+ F S
Sbjct: 292 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL--FHSG 349
Query: 290 --LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345
+ + + D T++VW + + K + L E+ +T+L ++ + V GS D
Sbjct: 350 GKFILSCADDKTLRVW--DYKNKR----CMKTLNAHEHFVTSLDFHKTAPYVVTGSVD 401
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 12/116 (10%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV--VAGFDSLV 291
H D+V +S + LL S S D T+K+W +C+ +++ HD ++SV + D +V
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV 208
Query: 292 FTGSADGTVKVWRRELQG-------KGTKHFLAQVLLKQENAITALAVNQESAVVY 340
+ S D T+K+W E+Q G + ++ V Q+ + A N ++ V+
Sbjct: 209 -SASRDKTIKMW--EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 249 LLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SLVFTGSADGTVKVWRR 305
++ S S D T+KVW ++ H D++ + FD L+ + SAD T+K+W
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI--SFDHSGKLLASCSADMTIKLW-- 177
Query: 306 ELQG 309
+ QG
Sbjct: 178 DFQG 181
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 20/192 (10%)
Query: 126 IYSLAASGDLLYTGSDSKNIRVW-KNLKEFSGFKS-NSGLVKAIIITGDSNKIFTGHQDG 183
+Y L + +G I++W KN E + ++G V + + D I TG D
Sbjct: 136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITGSSDS 193
Query: 184 KIRIWKV---SRKNPSVHKRVGSLPT-FKDYVKSSVNPKNYVEVRRN--------RNVLK 231
+R+W V N +H L F + + + + + V R VL
Sbjct: 194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVL- 252
Query: 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLV 291
+ H AV+ + + + + S S D+T+KVW S C+ + ++N H I + + D LV
Sbjct: 253 VGHRAAVNVVDFDDK--YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI-ACLQYRDRLV 309
Query: 292 FTGSADGTVKVW 303
+GS+D T+++W
Sbjct: 310 VSGSSDNTIRLW 321
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 84/193 (43%), Gaps = 18/193 (9%)
Query: 124 GHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAII-ITGDSNKIFTGHQD 182
G + L ++ TGS +RVW ++ + +A++ + ++ + T +D
Sbjct: 174 GSVLCLQYDERVIITGSSDSTVRVW-DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKD 232
Query: 183 GKIRIWKVS-------RKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIR-- 233
I +W ++ R+ H+ ++ F D S + ++V +R
Sbjct: 233 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL 292
Query: 234 --HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-L 290
H ++CL L+ SGS D T+++W I CL + H++ + + FD+
Sbjct: 293 NGHKRGIACLQYRDR--LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI--RFDNKR 348
Query: 291 VFTGSADGTVKVW 303
+ +G+ DG +KVW
Sbjct: 349 IVSGAYDGKIKVW 361
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 96/225 (42%), Gaps = 22/225 (9%)
Query: 133 GDLLYTGSDSKNIRVW-KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVS 191
G + + SD K +++W +N + +S V+ + + D I + D +++W
Sbjct: 356 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-- 413
Query: 192 RKNPSVHKRVGSLPTF-------KDYVKSSVNPKNYVEV-RRNRNVLKIR--HYDAVSCL 241
R + G + D +S + V++ RN +L+ H +V +
Sbjct: 414 RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV 473
Query: 242 SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTV 300
+ + + + S S DKT+K+W + + L+++ H ++ V D + + S D TV
Sbjct: 474 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 532
Query: 301 KVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345
K+W R Q L Q L +++ +A + + + SSD
Sbjct: 533 KLWNRNGQ-------LLQTLTGHSSSVWGVAFSPDGQTIASASSD 570
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 93/225 (41%), Gaps = 22/225 (9%)
Query: 133 GDLLYTGSDSKNIRVW-KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVS 191
G + + SD K +++W +N + +S V + + D I + D +++W
Sbjct: 274 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-- 331
Query: 192 RKNPSVHKRVGSLPTF--------KDYVKSSVNPKNYVEVRRNRNVLKIR--HYDAVSCL 241
R + G + + S+ + K RN +L+ H +V +
Sbjct: 332 RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV 391
Query: 242 SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV-AGFDSLVFTGSADGTV 300
+ + + + S S DKT+K+W + + L+++ H ++ V + D + + S D TV
Sbjct: 392 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTV 450
Query: 301 KVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345
K+W R Q L Q L +++ +A + + + S D
Sbjct: 451 KLWNRNGQ-------LLQTLTGHSSSVRGVAFSPDGQTIASASDD 488
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/245 (20%), Positives = 102/245 (41%), Gaps = 24/245 (9%)
Query: 115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVW-KNLKEFSGFKSNSGLVKAIIITG 171
L+ ++ ++ +A S G + + SD K +++W +N + +S V + +
Sbjct: 131 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP 190
Query: 172 DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFK--------DYVKSSVNPKNYVEV 223
D I + D +++W R + G + + + S+ + K
Sbjct: 191 DGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 248
Query: 224 RRNRNVLKIR--HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAIN 281
RN +L+ H +V+ ++ + + S S DKT+K+W + + L+++ H ++
Sbjct: 249 NRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVW 307
Query: 282 SVVAGFD-SLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVY 340
V D + + S D TVK+W R Q H Q L +++ +A + + +
Sbjct: 308 GVAFSPDGQTIASASDDKTVKLWNRNGQ-----HL--QTLTGHSSSVWGVAFSPDGQTIA 360
Query: 341 CGSSD 345
S D
Sbjct: 361 SASDD 365
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 87/206 (42%), Gaps = 21/206 (10%)
Query: 151 LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTF--- 207
+KE + +++S V+ + + D I + D +++W +R + G +
Sbjct: 6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLW--NRNGQLLQTLTGHSSSVWGV 63
Query: 208 -----KDYVKSSVNPKNYVEVRRNRNVLKIR--HYDAVSCLSLNAEQGLLYSGSWDKTLK 260
+ S+ + K RN +L+ H +V ++ + + + S S DKT+K
Sbjct: 64 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 123
Query: 261 VWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVWRRELQGKGTKHFLAQV 319
+W + + L+++ H ++ V D + + S D TVK+W R Q L Q
Sbjct: 124 LWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-------LLQT 175
Query: 320 LLKQENAITALAVNQESAVVYCGSSD 345
L +++ +A + + + S D
Sbjct: 176 LTGHSSSVWGVAFSPDGQTIASASDD 201
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 31/161 (19%), Positives = 68/161 (42%), Gaps = 15/161 (9%)
Query: 115 LIGSIVRKEGHIYSLAASGD--LLYTGSDSKNIRVW-KNLKEFSGFKSNSGLVKAIIITG 171
L+ ++ ++ +A S D + + SD K +++W +N + +S V+ + +
Sbjct: 418 LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP 477
Query: 172 DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFK--------DYVKSSVNPKNYVEV 223
D I + D +++W R + G + + + S+ + K
Sbjct: 478 DGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535
Query: 224 RRNRNVLKIR--HYDAVSCLSLNAEQGLLYSGSWDKTLKVW 262
RN +L+ H +V ++ + + + S S DKT+K+W
Sbjct: 536 NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 83/193 (43%), Gaps = 41/193 (21%)
Query: 121 RKEGHI-----YSLAASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIITGDS 173
R EGH +L+ +G+ + S ++R+W +N + F ++ V ++ + D+
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 174 NKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIR 233
+I +G +D +R+W V K +H + +
Sbjct: 122 RQIVSGGRDNALRVWNV--KGECMH-----------------------------TLSRGA 150
Query: 234 HYDAVSCL--SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SL 290
H D VSC+ S + + ++ SG WD +KVW ++ + + + H + + SV D SL
Sbjct: 151 HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSL 210
Query: 291 VFTGSADGTVKVW 303
+ DG ++W
Sbjct: 211 CASSDKDGVARLW 223
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/251 (20%), Positives = 108/251 (43%), Gaps = 44/251 (17%)
Query: 118 SIVRKEGHIYSLAASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIITGDSNK 175
++V G ++S +++ +GS + ++VW + + ++ V+ + + +
Sbjct: 154 TLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKR 211
Query: 176 IFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFK--DYVKSSVNPKNYVEVRRNRNVLKIR 233
+ +G +D +R+W + +H +G + + Y V Y ++K+
Sbjct: 212 VVSGSRDATLRVWDIE-TGQCLHVLMGHVAAVRCVQYDGRRVVSGAY------DFMVKVW 264
Query: 234 HYDAVSCL-----------SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINS 282
+ +CL SL + + SGS D +++VW + C+ ++ H ++ S
Sbjct: 265 DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH-QSLTS 323
Query: 283 VVAGFDSLVFTGSADGTVKVW-------RRELQGKGTKHFLAQVLLKQENAITALAVNQE 335
+ D+++ +G+AD TVK+W + LQG K ++A+T L N+
Sbjct: 324 GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPN----------KHQSAVTCLQFNKN 373
Query: 336 SAVVYCGSSDG 346
V S DG
Sbjct: 374 --FVITSSDDG 382
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 86/194 (44%), Gaps = 21/194 (10%)
Query: 126 IYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDG 183
I L G+ + +GSD ++VW + K ++G V + + N I +G D
Sbjct: 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDR 179
Query: 184 KIRIWKVSRKNPSVHKRVGSLPTF-------KDYVKSSVNPKNYV---EVRRNRNVLKIR 233
+++W + +H G T K V S + V E + +VL +
Sbjct: 180 TLKVWN-AETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL-MG 237
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSL-VF 292
H AV C+ + + + SG++D +KVW CL ++ H + + S+ FD + V
Sbjct: 238 HVAAVRCVQYDGRR--VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVV 293
Query: 293 TGSADGTVKVWRRE 306
+GS D +++VW E
Sbjct: 294 SGSLDTSIRVWDVE 307
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 80/183 (43%), Gaps = 22/183 (12%)
Query: 136 LYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAI-IITGDSNKIFTGHQDGKIRIWKVSRKN 194
+ +GS +RVW +++ G V A+ + D ++ +G D +++W +
Sbjct: 212 VVSGSRDATLRVW-DIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW-----D 265
Query: 195 PSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCL-SLNAEQGL---- 249
P + +L + V S +V +++ + +C+ +L Q L
Sbjct: 266 PETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM 325
Query: 250 ------LYSGSWDKTLKVWRISDCKCLESI---NAHDDAINSVVAGFDSLVFTGSADGTV 300
L SG+ D T+K+W I +CL+++ N H A+ + + V T S DGTV
Sbjct: 326 ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-KNFVITSSDDGTV 384
Query: 301 KVW 303
K+W
Sbjct: 385 KLW 387
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 229 VLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD 288
VLK ++CL + + SGS D TLKVW KCL ++ H + S D
Sbjct: 113 VLKGHDDHVITCLQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-D 169
Query: 289 SLVFTGSADGTVKVWRRE 306
+++ +GS D T+KVW E
Sbjct: 170 NIIISGSTDRTLKVWNAE 187
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 262 WRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVW 303
WR + K + + HDD + + + + + +GS D T+KVW
Sbjct: 103 WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW 144
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 12/108 (11%)
Query: 242 SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAI--NSVVAGFDSLVFTGSADGT 299
SL+ + G++ SGSWDKT KVW+ + + ++ AH+ ++ VV+ ++ T SAD T
Sbjct: 109 SLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKT 166
Query: 300 VKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
+K+W+ + K K F + + LAV + + C S+DGL
Sbjct: 167 IKLWQND---KVIKTFSG----IHNDVVRHLAVVDDGHFISC-SNDGL 206
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 87/198 (43%), Gaps = 10/198 (5%)
Query: 118 SIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKS-NSGLVKAIIITGDSNKI 176
+++ +G++ SL+ ++ +GS K +VWK ++ N+ + A +++ NK
Sbjct: 99 TLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKF 158
Query: 177 FTGHQDGKIRIW---KVSRKNPSVHKR-VGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKI 232
T D I++W KV + +H V L D S + +++ +
Sbjct: 159 LTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVL 218
Query: 233 RHYDA----VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD 288
R Y+ V C+ L ++ G D+T+++W + + I +I SV +
Sbjct: 219 RTYEGHESFVYCIKLLPNGDIVSCGE-DRTVRIWSKENGSLKQVITLPAISIWSVDCXSN 277
Query: 289 SLVFTGSADGTVKVWRRE 306
+ GS+D V+++ +E
Sbjct: 278 GDIIVGSSDNLVRIFSQE 295
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 86/206 (41%), Gaps = 50/206 (24%)
Query: 115 LIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWK---NLKEFS----GFKSNSGLV 164
L G++ G + SLA S +LL + S K + WK + ++F FK +S +V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 165 KAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVR 224
+ +T D + D +R+W V+ T++ +V
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG------------ 105
Query: 225 RNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV- 283
H V + ++ + ++ SGS DKT+KVW I +CL ++ H+D ++ V
Sbjct: 106 ---------HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVR 155
Query: 284 -----VAGFDSL-VFTGSADGTVKVW 303
A DS+ + + D VK W
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAW 181
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 153 EFSGF-KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKN 194
EF+G+ K+ ++ + D +F G+ D IR+W+V N
Sbjct: 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 86/206 (41%), Gaps = 50/206 (24%)
Query: 115 LIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWK---NLKEFS----GFKSNSGLV 164
L G++ G + SLA S +LL + S K + WK + ++F FK +S +V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 165 KAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVR 224
+ +T D + D +R+W V+ T++ +V
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG------------ 105
Query: 225 RNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV- 283
H V + ++ + ++ SGS DKT+KVW I +CL ++ H+D ++ V
Sbjct: 106 ---------HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVR 155
Query: 284 -----VAGFDSL-VFTGSADGTVKVW 303
A DS+ + + D VK W
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAW 181
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 86/206 (41%), Gaps = 50/206 (24%)
Query: 115 LIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWK---NLKEFS----GFKSNSGLV 164
L G++ G + SLA S +LL + S K + WK + ++F FK +S +V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 165 KAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVR 224
+ +T D + D +R+W V+ T++ +V
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG------------ 105
Query: 225 RNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV- 283
H V + ++ + ++ SGS DKT+KVW I +CL ++ H+D ++ V
Sbjct: 106 ---------HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVR 155
Query: 284 -----VAGFDSL-VFTGSADGTVKVW 303
A DS+ + + D VK W
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAW 181
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 86/206 (41%), Gaps = 50/206 (24%)
Query: 115 LIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWK---NLKEFS----GFKSNSGLV 164
L G++ G + SLA S +LL + S K + WK + ++F FK +S +V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 165 KAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVR 224
+ +T D + D +R+W V+ T++ +V
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG------------ 105
Query: 225 RNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV- 283
H V + ++ + ++ SGS DKT+KVW I +CL ++ H+D ++ V
Sbjct: 106 ---------HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVR 155
Query: 284 -----VAGFDSL-VFTGSADGTVKVW 303
A DS+ + + D VK W
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAW 181
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 153 EFSGF-KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKN 194
EF+G+ K+ ++ + D +F G+ D IR+W+V N
Sbjct: 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 86/206 (41%), Gaps = 50/206 (24%)
Query: 115 LIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWK---NLKEFS----GFKSNSGLV 164
L G++ G + SLA S +LL + S K + WK + ++F FK +S +V
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Query: 165 KAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVR 224
+ +T D + D +R+W V+ T++ +V
Sbjct: 63 QDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG------------ 99
Query: 225 RNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV- 283
H V + ++ + ++ SGS DKT+KVW I +CL ++ H+D ++ V
Sbjct: 100 ---------HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVR 149
Query: 284 -----VAGFDSL-VFTGSADGTVKVW 303
A DS+ + + D VK W
Sbjct: 150 VVPNEKADDDSVTIISAGNDKMVKAW 175
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 153 EFSGF-KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKN 194
EF+G+ K+ ++ + D +F G+ D IR+W+V N
Sbjct: 271 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 313
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 32/161 (19%)
Query: 133 GDLLYTGSDSKNIRVWK---NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW- 188
++ +GS +R+W + + + G + ++ D + TG DG R++
Sbjct: 218 ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD 277
Query: 189 -------KVSRKNP-----------SVHKRVGSLPTFKDYVKSSVNPKNYV------EVR 224
+V + P SV + F Y N YV E+
Sbjct: 278 MRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS----NGDCYVWDTLLAEMV 333
Query: 225 RNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265
N L+ H +SCL L+++ L +GSWDK LK+W S
Sbjct: 334 LNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVA--GFD 288
K H D V LS+ ++ SG D ++KVW +S L+S NAH +N V A G D
Sbjct: 135 KYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD 194
Query: 289 SLVFTGSADGTVKVW 303
++ + DG + +W
Sbjct: 195 TIFLSCGEDGRILLW 209
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 54/109 (49%), Gaps = 18/109 (16%)
Query: 95 SPWLM--PPYSPNENLLSSCNGLIGSIVRKEGHIYSLA-ASGDLLYTGSDSKNIRVWKNL 151
S W+ P +PNE+L ++ V+ E + +A S + SDS + +W+ L
Sbjct: 71 SIWVFKDPEGAPNESLCTAG-------VQTEAGVTDVAWVSEKGILVASDSGAVELWEIL 123
Query: 152 KE-------FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK 193
++ F+ ++ + +VK + + D + +G +D +++W +S+K
Sbjct: 124 EKESLLVNKFAKYEHDD-IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK 171
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 50/206 (24%)
Query: 115 LIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWK---NLKEFS----GFKSNSGLV 164
L G++ G + SLA S +LL + S K + WK + ++F FK +S +V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 165 KAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVR 224
+ +T D + D +R+W V+ T++ +V
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG------------ 105
Query: 225 RNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV- 283
H V + ++ + + SGS DKT+KVW I +CL ++ H+D ++ V
Sbjct: 106 ---------HKSDVXSVDIDKKASXIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVR 155
Query: 284 -----VAGFDSL-VFTGSADGTVKVW 303
A DS+ + + D VK W
Sbjct: 156 VVPNEKADDDSVTIISAGNDKXVKAW 181
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 78/182 (42%), Gaps = 36/182 (19%)
Query: 128 SLAASGDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQD 182
+L A G + S K +R+W + + F G KS+ V ++ I ++ I +G +D
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD---VXSVDIDKKASXIISGSRD 128
Query: 183 GKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLS 242
I++W + + + +L D+V V V N D+V+ +S
Sbjct: 129 KTIKVWTIKGQC------LATLLGHNDWVSQ-------VRVVPNEKA----DDDSVTIIS 171
Query: 243 LNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVK 301
+G+ DK +K W ++ + H+ IN++ A D +L+ + DG +
Sbjct: 172 ---------AGN-DKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIX 221
Query: 302 VW 303
+W
Sbjct: 222 LW 223
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 153 EFSGF-KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKN 194
EF+G+ K+ ++ + D +F G+ D IR+W+V N
Sbjct: 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTAN 319
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 100/249 (40%), Gaps = 60/249 (24%)
Query: 88 PVSPYTKSPWLMPPYSPNENLLSSCNG-------------LIGSIVRKEGHIYSL----- 129
P P ++ W + ++P LL+SC G I V EGH ++
Sbjct: 12 PAHPDSRC-WFLA-WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAW 69
Query: 130 AASGDLLYTGSDSKNIRVWK-NLKEFSGFKSNSG---LVKAIIITGDSNKIFTGHQDGKI 185
+ G+ L + S +WK N +F + G VK++ N + T +D +
Sbjct: 70 SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSV 129
Query: 186 RIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA 245
+W+V ++ +Y SV N + ++H + +
Sbjct: 130 WVWEVDEED--------------EYECVSV---------LNSHTQDVKH------VVWHP 160
Query: 246 EQGLLYSGSWDKTLKVWRIS--DCKCLESINAHDDAINSVVAGFD---SLVFTGSADGTV 300
Q LL S S+D T+K++R D C ++ H+ + S+ FD + + S D TV
Sbjct: 161 SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSL--AFDPSGQRLASCSDDRTV 218
Query: 301 KVWRRELQG 309
++WR+ L G
Sbjct: 219 RIWRQYLPG 227
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 233 RHYDAVSCLSL--NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV-VAGFDS 289
H + V+C ++ LL +GS D LK+W ++ +C ++ H +++N + D
Sbjct: 703 EHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDK 762
Query: 290 LVFTGSADGTVKVW 303
L+ + SADGT+K+W
Sbjct: 763 LLASCSADGTLKLW 776
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 215 VNPKNYVEVRRNRNVLKIR-HYDAV--SCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE 271
+N KN + R L +R H DAV +C S + ++ + S DKTL+V++ + L
Sbjct: 604 INKKNITNLSR----LVVRPHTDAVYHACFSEDGQR--IASCGADKTLQVFKAETGEKLL 657
Query: 272 SINAHDDAINSVVAGF---DSLVFTGSADGTVKVW 303
I AH+D + + F D + T S D VK+W
Sbjct: 658 EIKAHEDEV--LCCAFSTDDRFIATCSVDKKVKIW 690
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 81/197 (41%), Gaps = 30/197 (15%)
Query: 125 HIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGK 184
H + G T SD + IR+W+ K NS A+++ + + +F Q+ +
Sbjct: 892 HGVMFSPDGSSFLTSSDDQTIRLWETKK----VCKNS----AVMLKQEVDVVF---QENE 940
Query: 185 IRIWKVS--RKNPSVHKRVGSLPTFKDYVKSS--VNPK-------------NYVEVRRNR 227
+ + V R+ ++ R G + + S ++P +E+ NR
Sbjct: 941 VMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNR 1000
Query: 228 NVL-KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG 286
+ +H V + A++ L S S D ++VW KC+ + H + +
Sbjct: 1001 IFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI-FLRGHQETVKDFRLL 1059
Query: 287 FDSLVFTGSADGTVKVW 303
+S + + S DGTVKVW
Sbjct: 1060 KNSRLLSWSFDGTVKVW 1076
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 227 RNVLKIR-HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV- 284
+L+I+ H D V C + + + + + S DK +K+W + + + + H + +N
Sbjct: 654 EKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHF 713
Query: 285 --AGFDSLVFTGSADGTVKVW 303
+ L+ TGS+D +K+W
Sbjct: 714 TNSSHHLLLATGSSDCFLKLW 734
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 17/150 (11%)
Query: 167 IIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDY------------VKSS 214
I T D + + D +I++W + + + R G T KD+ +
Sbjct: 1015 IQFTADEKTLISSSDDAEIQVWN-WQLDKCIFLR-GHQETVKDFRLLKNSRLLSWSFDGT 1072
Query: 215 VNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN 274
V N + + ++ + H V ++ + S S DKT K+W L +
Sbjct: 1073 VKVWNIITGNKEKDF--VCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELR 1130
Query: 275 AHDDAINSVVAGFDS-LVFTGSADGTVKVW 303
H+ + DS L+ TG +G +++W
Sbjct: 1131 GHNGCVRCSAFSVDSTLLATGDDNGEIRIW 1160
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 119 IVRKEGHIYSLAASGDLLYTGSDS--KNIRVWKN--LKEFSGFKSNSGLVKAIIITGDSN 174
V +G + S S D S S K ++W L + ++G V+ + DS
Sbjct: 1087 FVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDST 1146
Query: 175 KIFTGHQDGKIRIWKVS 191
+ TG +G+IRIW VS
Sbjct: 1147 LLATGDDNGEIRIWNVS 1163
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 75/158 (47%), Gaps = 18/158 (11%)
Query: 164 VKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSV----HKR----VGSLPTFKDYVKSSV 215
++++ + D + TG +D IRIW + + + H++ + P+ V S
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 216 NPKNYV-EVRRNRNVLKIRHYDAVSCLSLNAEQG-LLYSGSWDKTLKVWRISDCKCLESI 273
+ + ++R + L + D V+ ++++ G + +GS D+ ++VW +E +
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245
Query: 274 NA-------HDDAINSVVAGFDSL-VFTGSADGTVKVW 303
++ H D++ SVV D V +GS D +VK+W
Sbjct: 246 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 83/226 (36%), Gaps = 48/226 (21%)
Query: 123 EGHIYSLA--ASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIITGDSNKIFT 178
E IYSL SGD L +GS + +R+W + + G+ + GD I
Sbjct: 165 EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA 224
Query: 179 GHQDGKIRIWK------VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEV--------- 223
G D +R+W V R + G KD V S V ++ V
Sbjct: 225 GSLDRAVRVWDSETGFLVERLDSENESGTG----HKDSVYSVVFTRDGQSVVSGSLDRSV 280
Query: 224 ----RRNRN--------------VLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265
+N N V I H D V ++ + SGS D+ + W
Sbjct: 281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 340
Query: 266 DCKCLESINAHDDAINSV-VAGFDSL-----VF-TGSADGTVKVWR 304
L + H +++ SV VA SL VF TGS D ++W+
Sbjct: 341 SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%)
Query: 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLV 291
I H+ +S L N LL S S D TL++W + H +I S D V
Sbjct: 244 IGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKV 303
Query: 292 FTGSADGTVKVW 303
+ S DG+V++W
Sbjct: 304 ISCSMDGSVRLW 315
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 135 LLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSR 192
LL + SD +R+W N + F +S + + GD +K+ + DG +R+W + +
Sbjct: 261 LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD-DKVISCSMDGSVRLWSLKQ 319
Query: 193 KNPSVHKRVGSLPTF 207
V +P F
Sbjct: 320 NTLLALSIVDGVPIF 334
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 10/85 (11%)
Query: 225 RNRNVLKIR-HYDAV--SCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAIN 281
+N + L +R H DAV +C S + ++ + S DKTL+V++ + L I AH+D +
Sbjct: 611 KNLSRLVVRPHTDAVYHACFSQDGQR--IASCGADKTLQVFKAETGEKLLDIKAHEDEV- 667
Query: 282 SVVAGF---DSLVFTGSADGTVKVW 303
+ F DS + T SAD VK+W
Sbjct: 668 -LCCAFSSDDSYIATCSADKKVKIW 691
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 233 RHYDAVSCLSLN--AEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV-VAGFDS 289
H + V+C + LL +GS D LK+W ++ +C ++ H +++N + D
Sbjct: 704 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE 763
Query: 290 LVFTGSADGTVKVW 303
L+ + SADGT+++W
Sbjct: 764 LLASCSADGTLRLW 777
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 72/192 (37%), Gaps = 20/192 (10%)
Query: 125 HIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLV--KAIIITGDSNKIFTGHQD 182
H + G T SD + IRVW+ K NS +V + I + N+ D
Sbjct: 893 HGVMFSPDGSSFLTASDDQTIRVWETKK----VCKNSAIVLKQEIDVVFQENETMVLAVD 948
Query: 183 GKIRIWKVSRKN------PSVHKRVGSLPTFKDYVK--SSVNPKNYVEVRRNRNVLK-IR 233
+ ++ K P L +YV +E+ NR +
Sbjct: 949 NIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG 1008
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVW--RISDCKCLESINAHDDAINSVVAGFDSLV 291
H AV + A+ L S S D ++VW + D L+ AH + + DS +
Sbjct: 1009 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ---AHQETVKDFRLLQDSRL 1065
Query: 292 FTGSADGTVKVW 303
+ S DGTVKVW
Sbjct: 1066 LSWSFDGTVKVW 1077
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS---L 290
H D V C + +++ + + S DK +K+W + K + + + H + +N S L
Sbjct: 663 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLL 722
Query: 291 VFTGSADGTVKVW 303
+ TGS D +K+W
Sbjct: 723 LATGSNDFFLKLW 735
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 113 NGLIGSIVR----KEGHIYSLAASGDLLYTGSDS--KNIRVWKN--LKEFSGFKSNSGLV 164
N + G I R +G + S A S D S S K ++W L K ++G V
Sbjct: 1078 NVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCV 1137
Query: 165 KAIIITGDSNKIFTGHQDGKIRIWKVS 191
+ + D + TG +G+IRIW VS
Sbjct: 1138 RCSAFSLDGILLATGDDNGEIRIWNVS 1164
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 62/167 (37%), Gaps = 17/167 (10%)
Query: 150 NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKD 209
N + FS + V+ I T D + + +D I++W + + T KD
Sbjct: 999 NNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ--AHQETVKD 1056
Query: 210 Y------------VKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDK 257
+ +V N + R R+ H V +++++ S S DK
Sbjct: 1057 FRLLQDSRLLSWSFDGTVKVWNVITGRIERDF--TCHQGTVLSCAISSDATKFSSTSADK 1114
Query: 258 TLKVWRISDCKCLESINAHDDAINSVVAGFDSLVF-TGSADGTVKVW 303
T K+W L + H+ + D ++ TG +G +++W
Sbjct: 1115 TAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1161
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 250 LYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTG-SADGTVKVWRREL 307
L S S+D T+KVW + + H + S D+ F+ SAD T K+W +L
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL 1123
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 10/85 (11%)
Query: 225 RNRNVLKIR-HYDAV--SCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAIN 281
+N + L +R H DAV +C S + ++ + S DKTL+V++ + L I AH+D +
Sbjct: 604 KNLSRLVVRPHTDAVYHACFSQDGQR--IASCGADKTLQVFKAETGEKLLDIKAHEDEV- 660
Query: 282 SVVAGF---DSLVFTGSADGTVKVW 303
+ F DS + T SAD VK+W
Sbjct: 661 -LCCAFSSDDSYIATCSADKKVKIW 684
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 233 RHYDAVSCLSLN--AEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV-VAGFDS 289
H + V+C + LL +GS D LK+W ++ +C ++ H +++N + D
Sbjct: 697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE 756
Query: 290 LVFTGSADGTVKVW 303
L+ + SADGT+++W
Sbjct: 757 LLASCSADGTLRLW 770
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 72/192 (37%), Gaps = 20/192 (10%)
Query: 125 HIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLV--KAIIITGDSNKIFTGHQD 182
H + G T SD + IRVW+ K NS +V + I + N+ D
Sbjct: 886 HGVMFSPDGSSFLTASDDQTIRVWETKK----VCKNSAIVLKQEIDVVFQENETMVLAVD 941
Query: 183 GKIRIWKVSRKN------PSVHKRVGSLPTFKDYVK--SSVNPKNYVEVRRNRNVLK-IR 233
+ ++ K P L +YV +E+ NR +
Sbjct: 942 NIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG 1001
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVW--RISDCKCLESINAHDDAINSVVAGFDSLV 291
H AV + A+ L S S D ++VW + D L+ AH + + DS +
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ---AHQETVKDFRLLQDSRL 1058
Query: 292 FTGSADGTVKVW 303
+ S DGTVKVW
Sbjct: 1059 LSWSFDGTVKVW 1070
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS---L 290
H D V C + +++ + + S DK +K+W + K + + + H + +N S L
Sbjct: 656 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLL 715
Query: 291 VFTGSADGTVKVW 303
+ TGS D +K+W
Sbjct: 716 LATGSNDFFLKLW 728
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 113 NGLIGSIVR----KEGHIYSLAASGDLLYTGSDS--KNIRVWKN--LKEFSGFKSNSGLV 164
N + G I R +G + S A S D S S K ++W L K ++G V
Sbjct: 1071 NVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCV 1130
Query: 165 KAIIITGDSNKIFTGHQDGKIRIWKVS 191
+ + D + TG +G+IRIW VS
Sbjct: 1131 RCSAFSLDGILLATGDDNGEIRIWNVS 1157
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 62/167 (37%), Gaps = 17/167 (10%)
Query: 150 NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKD 209
N + FS + V+ I T D + + +D I++W + + T KD
Sbjct: 992 NNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ--AHQETVKD 1049
Query: 210 Y------------VKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDK 257
+ +V N + R R+ H V +++++ S S DK
Sbjct: 1050 FRLLQDSRLLSWSFDGTVKVWNVITGRIERDF--TCHQGTVLSCAISSDATKFSSTSADK 1107
Query: 258 TLKVWRISDCKCLESINAHDDAINSVVAGFDSLVF-TGSADGTVKVW 303
T K+W L + H+ + D ++ TG +G +++W
Sbjct: 1108 TAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 250 LYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTG-SADGTVKVWRREL 307
L S S+D T+KVW + + H + S D+ F+ SAD T K+W +L
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL 1116
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H VS L+L+ E S SWDKTL++W + + H + SV D+ +
Sbjct: 75 HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQIL 134
Query: 293 TGSADGTVKVW 303
+ A+ +K+W
Sbjct: 135 SAGAEREIKLW 145
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 19/74 (25%)
Query: 273 INAHDDAINSVVAGFDS-------LVFTGSADGTVKVWR---RELQG---------KGTK 313
+ H D + S+VAGF ++ +GS D TV +W+ E G G
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 314 HFLAQVLLKQENAI 327
HF++ + L QEN
Sbjct: 77 HFVSDLALSQENCF 90
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 73/185 (39%), Gaps = 25/185 (13%)
Query: 130 AASGDLLYTGSDSKNIRVWKNLKEFSG------FKSNSGLVKAII-ITGDSNKIFTG--H 180
A G L +G + + VW + G F + G VKA+ SN + TG
Sbjct: 250 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 309
Query: 181 QDGKIRIWKVSR----KNPSVHKRVGSL---PTFKDYVKSSVNPKNYVEVRRNRNVLKIR 233
D IRIW V H +V S+ P +K+ + +N + + + + K+
Sbjct: 310 SDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA 369
Query: 234 ----HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS 289
H V L+++ + + S + D+TL++WR C E A A S
Sbjct: 370 ELKGHTSRVLSLTMSPDGATVASAAADETLRLWR-----CFELDPARRREREKASAAKSS 424
Query: 290 LVFTG 294
L+ G
Sbjct: 425 LIHQG 429
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 73/185 (39%), Gaps = 25/185 (13%)
Query: 130 AASGDLLYTGSDSKNIRVWKNLKEFSG------FKSNSGLVKAII-ITGDSNKIFTG--H 180
A G L +G + + VW + G F + G VKA+ SN + TG
Sbjct: 239 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 298
Query: 181 QDGKIRIWKVSR----KNPSVHKRVGSL---PTFKDYVKSSVNPKNYVEVRRNRNVLKIR 233
D IRIW V H +V S+ P +K+ + +N + + + + K+
Sbjct: 299 SDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA 358
Query: 234 ----HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS 289
H V L+++ + + S + D+TL++WR C E A A S
Sbjct: 359 ELKGHTSRVLSLTMSPDGATVASAAADETLRLWR-----CFELDPARRREREKASAAKSS 413
Query: 290 LVFTG 294
L+ G
Sbjct: 414 LIHQG 418
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 22/153 (14%)
Query: 128 SLAASGDLLYTGSDSKNIRVWKNLKE------FSGFKSNSGLVKAIIITGDSNKIFTGHQ 181
SLA L +G+ + ++W +++E F+G +S+ + AI + N TG
Sbjct: 191 SLAPDTRLFVSGACDASAKLW-DVREGMCRQTFTGHESD---INAICFFPNGNAFATGSD 246
Query: 182 DGKIRIWKVSRKNPSV---HKRVGSLPTFKDYVKS---------SVNPKNYVEVRRNRNV 229
D R++ + + H + T + KS N + ++ +R
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306
Query: 230 LKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVW 262
+ H + VSCL + + + +GSWD LK+W
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVF- 292
H V LSL + L SG+ D + K+W + + C ++ H+ IN++ + F
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 293 TGSADGTVKVW 303
TGS D T +++
Sbjct: 243 TGSDDATCRLF 253
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 26/152 (17%)
Query: 172 DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNP--KNYVEVRRNRNV 229
DS + + QDGK+ IW N +V ++P +V + NYV N+
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTN-----KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 230 -----LKIR------------HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES 272
LK R H +SC + ++ S S D T +W I + +
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTT 179
Query: 273 INAHDDAINSVVAGFDSLVF-TGSADGTVKVW 303
H + S+ D+ +F +G+ D + K+W
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV-VAGFDSLVF 292
H ++ + N E LL+S S D + VW + + L +++ H I S+ V F
Sbjct: 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCV 90
Query: 293 TGSADGTVKVW 303
TGSAD ++K+W
Sbjct: 91 TGSADYSIKLW 101
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 22/153 (14%)
Query: 128 SLAASGDLLYTGSDSKNIRVWKNLKE------FSGFKSNSGLVKAIIITGDSNKIFTGHQ 181
SLA L +G+ + ++W +++E F+G +S+ + AI + N TG
Sbjct: 191 SLAPDTRLFVSGACDASAKLW-DVREGMCRQTFTGHESD---INAICFFPNGNAFATGSD 246
Query: 182 DGKIRIWKVSRKNPSV---HKRVGSLPTFKDYVKS---------SVNPKNYVEVRRNRNV 229
D R++ + + H + T + KS N + ++ +R
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306
Query: 230 LKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVW 262
+ H + VSCL + + + +GSWD LK+W
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVF- 292
H V LSL + L SG+ D + K+W + + C ++ H+ IN++ + F
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 293 TGSADGTVKVW 303
TGS D T +++
Sbjct: 243 TGSDDATCRLF 253
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 26/152 (17%)
Query: 172 DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNP--KNYVEVRRNRNV 229
DS + + QDGK+ IW N +V ++P +V + NYV N+
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTN-----KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 230 -----LKIR------------HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES 272
LK R H +SC + ++ S S D T +W I + +
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTT 179
Query: 273 INAHDDAINSVVAGFDSLVF-TGSADGTVKVW 303
H + S+ D+ +F +G+ D + K+W
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 22/153 (14%)
Query: 128 SLAASGDLLYTGSDSKNIRVWKNLKE------FSGFKSNSGLVKAIIITGDSNKIFTGHQ 181
SLA L +G+ + ++W +++E F+G +S+ + AI + N TG
Sbjct: 191 SLAPDTRLFVSGACDASAKLW-DVREGMCRQTFTGHESD---INAICFFPNGNAFATGSD 246
Query: 182 DGKIRIWKVSRKNPSV---HKRVGSLPTFKDYVKS---------SVNPKNYVEVRRNRNV 229
D R++ + + H + T + KS N + ++ +R
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306
Query: 230 LKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVW 262
+ H + VSCL + + + +GSWD LK+W
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVF- 292
H V LSL + L SG+ D + K+W + + C ++ H+ IN++ + F
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 293 TGSADGTVKVW 303
TGS D T +++
Sbjct: 243 TGSDDATCRLF 253
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 26/152 (17%)
Query: 172 DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNP--KNYVEVRRNRNV 229
DS + + QDGK+ IW N +V ++P +V + NYV N+
Sbjct: 66 DSRLLLSASQDGKLIIWDSYTTN-----KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 230 -----LKIR------------HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES 272
LK R H +SC + ++ S S D T +W I + +
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTT 179
Query: 273 INAHDDAINSVVAGFDSLVF-TGSADGTVKVW 303
H + S+ D+ +F +G+ D + K+W
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 22/153 (14%)
Query: 128 SLAASGDLLYTGSDSKNIRVWKNLKE------FSGFKSNSGLVKAIIITGDSNKIFTGHQ 181
SLA L +G+ + ++W +++E F+G +S+ + AI + N TG
Sbjct: 191 SLAPDTRLFVSGACDASAKLW-DVREGMCRQTFTGHESD---INAICFFPNGNAFATGSD 246
Query: 182 DGKIRIWKVSRKNPSV---HKRVGSLPTFKDYVKS---------SVNPKNYVEVRRNRNV 229
D R++ + + H + T + KS N + ++ +R
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306
Query: 230 LKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVW 262
+ H + VSCL + + + +GSWD LK+W
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVF- 292
H V LSL + L SG+ D + K+W + + C ++ H+ IN++ + F
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 293 TGSADGTVKVW 303
TGS D T +++
Sbjct: 243 TGSDDATCRLF 253
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 26/152 (17%)
Query: 172 DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNP--KNYVEVRRNRNV 229
DS + + QDGK+ IW N +V ++P +V + NYV N+
Sbjct: 66 DSRLLLSASQDGKLIIWDSYTTN-----KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 230 -----LKIR------------HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES 272
LK R H +SC + ++ S S D T +W I + +
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTT 179
Query: 273 INAHDDAINSVVAGFDSLVF-TGSADGTVKVW 303
H + S+ D+ +F +G+ D + K+W
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 22/153 (14%)
Query: 128 SLAASGDLLYTGSDSKNIRVWKNLKE------FSGFKSNSGLVKAIIITGDSNKIFTGHQ 181
SLA L +G+ + ++W +++E F+G +S+ + AI + N TG
Sbjct: 202 SLAPDTRLFVSGACDASAKLW-DVREGMCRQTFTGHESD---INAICFFPNGNAFATGSD 257
Query: 182 DGKIRIWKVSRKNPSV---HKRVGSLPTFKDYVKS---------SVNPKNYVEVRRNRNV 229
D R++ + + H + T + KS N + ++ +R
Sbjct: 258 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 317
Query: 230 LKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVW 262
+ H + VSCL + + + +GSWD LK+W
Sbjct: 318 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVF- 292
H V LSL + L SG+ D + K+W + + C ++ H+ IN++ + F
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 293 TGSADGTVKVW 303
TGS D T +++
Sbjct: 254 TGSDDATCRLF 264
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 26/152 (17%)
Query: 172 DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNP--KNYVEVRRNRNV 229
DS + + QDGK+ IW N +V ++P +V + NYV N+
Sbjct: 77 DSRLLVSASQDGKLIIWDSYTTN-----KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 131
Query: 230 -----LKIR------------HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES 272
LK R H +SC + ++ S S D T +W I + +
Sbjct: 132 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTT 190
Query: 273 INAHDDAINSVVAGFDSLVF-TGSADGTVKVW 303
H + S+ D+ +F +G+ D + K+W
Sbjct: 191 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 222
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 20/154 (12%)
Query: 130 AASGDLLYTGSDSKNIRVWKNLKEFSG------FKSNSGLVKAIIIT-GDSNKIFTG--H 180
A G L +G + + VW + G F + G VKA+ SN + TG
Sbjct: 159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 218
Query: 181 QDGKIRIWKVSR----KNPSVHKRVGSL---PTFKDYVKSSVNPKNYVEVRRNRNVLKIR 233
D IRIW V H +V S+ P +K+ + +N + + + + K+
Sbjct: 219 SDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA 278
Query: 234 ----HYDAVSCLSLNAEQGLLYSGSWDKTLKVWR 263
H V L+++ + + S + D+TL++WR
Sbjct: 279 ELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 9/65 (13%)
Query: 247 QGLLYSGSWDKTLKVWR--ISDCKCLESINAHDDAINSVVAGFDSL--VF---TGSADGT 299
+ LL S S+D T+++W+ D +C+ +N H+ + S + FD VF +GS D T
Sbjct: 165 EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWS--SDFDKTEGVFRLCSGSDDST 222
Query: 300 VKVWR 304
V+VW+
Sbjct: 223 VRVWK 227
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 242 SLNAEQGLLYSGSWDKTLKVWRI--SDCKCLESIN--AHDDAINSVVAG-FDSLVFTGSA 296
S + QG+L +GS D+ +K+ + D ++ ++ AH AI SV SL+ GS
Sbjct: 19 SFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF 78
Query: 297 DGTVKVWRRELQGKGTKHF-LAQVLLKQENAITALA 331
D TV +W +E T L ++ EN + +A
Sbjct: 79 DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVA 114
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 72/196 (36%), Gaps = 24/196 (12%)
Query: 127 YSLAASGD--LLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQD 182
Y+LA S D + ++ NI VW N F+ ++ I I+ D K++TG D
Sbjct: 145 YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204
Query: 183 GKIRIWKVSRKNPSVHKR--------VGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRH 234
+R W + R+ + + +G PT +++ + N + N+ H
Sbjct: 205 NTVRSWDL-REGRQLQQHDFTSQIFSLGYCPT-GEWLAVGMESSNVEVLHVNKPDKYQLH 262
Query: 235 YDAVSCLSLNAEQGLLYSGSW------DKTLKVWRISDCKCLESINAHDDAINSVVAGFD 288
LSL Y G W D L WR + ++ ++ D
Sbjct: 263 LHESCVLSLK----FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDD 318
Query: 289 SLVFTGSADGTVKVWR 304
+ TGS D V+
Sbjct: 319 KYIVTGSGDKKATVYE 334
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG--FD 288
K H D VS +S+ + SGS D +KVW ++ L S AH + V A D
Sbjct: 123 KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD 182
Query: 289 SLVFTGSADGTVKVW 303
S+ + S D + +W
Sbjct: 183 SVFLSCSEDNRILLW 197
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 13/94 (13%)
Query: 216 NPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ---GLLYSGSWDKTLKVWRISDC--KCL 270
NP +EV + + D++ CLS + L +GSW ++ W + D
Sbjct: 27 NPMKDIEVTSSPD-------DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP 79
Query: 271 ESINAHDDAINSVVAGFD-SLVFTGSADGTVKVW 303
++ H + V D S VFT S D T K+W
Sbjct: 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 250 LYSGSWDKTLKVWRISDCKCLESINAHD---DAINSVVAGFDSLVFTGSADGTVKVW 303
+++ S DKT K+W +S + ++ I HD I+ + A S V TGS D T+K W
Sbjct: 101 VFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 246 EQGLLYSGSWDKTLKVWRISD-CKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWR 304
E+ L+ +GS D + ++ + K ++++NAH D +N+++ S + + AD +K W
Sbjct: 552 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 611
Query: 305 RELQ 308
L+
Sbjct: 612 VVLE 615
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 225 RNRNVLKIRH-YDA----VSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKC-LESINAHD 277
RN N K H DA V+CLS N + +L +GS DKT+ +W + + K L S +H
Sbjct: 264 RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 323
Query: 278 DAINSVV--AGFDSLVFTGSADGTVKVW 303
D I V ++++ + D + VW
Sbjct: 324 DEIFQVQWSPHNETILASSGTDRRLHVW 351
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 225 RNRNVLKIRH-YDA----VSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKC-LESINAHD 277
RN N K H DA V+CLS N + +L +GS DKT+ +W + + K L S +H
Sbjct: 262 RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 321
Query: 278 DAINSVV--AGFDSLVFTGSADGTVKVW 303
D I V ++++ + D + VW
Sbjct: 322 DEIFQVQWSPHNETILASSGTDRRLHVW 349
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 246 EQGLLYSGSWDKTLKVWRISD-CKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWR 304
E+ L+ +GS D + ++ + K ++++NAH D +N+++ S + + AD +K W
Sbjct: 552 EEDLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 611
Query: 305 RELQ 308
L+
Sbjct: 612 VVLE 615
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 234 HYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKC-LESINAHDDAINSVV--AGFDS 289
H V+CLS N + +L +GS DKT+ +W + + K L S +H D I V ++
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 331
Query: 290 LVFTGSADGTVKVW 303
++ + D + VW
Sbjct: 332 ILASSGTDRRLNVW 345
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 225 RNRNVLKIRH-YDA----VSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKC-LESINAHD 277
RN N K H DA V+CLS N + +L +GS DKT+ +W + + K L S +H
Sbjct: 266 RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 325
Query: 278 DAINSVV--AGFDSLVFTGSADGTVKVW 303
D I V ++++ + D + VW
Sbjct: 326 DEIFQVQWSPHNETILASSGTDRRLHVW 353
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 71/181 (39%), Gaps = 26/181 (14%)
Query: 119 IVRKEGH---IYSLAA--SGDLLYTGSDSKNIRVWK---NLKEFSGFKSNSGLVKAIIIT 170
+V E H I S+A + + +GSD +++W N F+ + V +
Sbjct: 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149
Query: 171 -GDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSL--PTFKDYVKSSVNPKNYVEVRRNR 227
D + +G D +++W + + P+ G + DY P Y+ +
Sbjct: 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP--YMITASDD 207
Query: 228 NVLKIRHYDAVSCLS-------------LNAEQGLLYSGSWDKTLKVWRISDCKCLESIN 274
+KI Y SC++ + ++ SGS D TLK+W S K +++N
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Query: 275 A 275
Sbjct: 268 V 268
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 30/179 (16%)
Query: 157 FKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSS-- 214
F + S VK I + T G++ +W N V S+ + V++
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELW-----NYETQVEVRSIQVTETPVRAGKF 63
Query: 215 VNPKNYVEVRRNRNVLKIRHY-------------DAVSCLSLNAEQGLLYSGSWDKTLKV 261
+ KN++ V + +++ +Y D + ++++ + + SGS D T+K+
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 262 WRISDCKCLE-SINAHDDAINSVVAGFD----SLVFTGSADGTVKVWRRELQGKGTKHF 315
W + LE + H+ + V F+ S +G D TVKVW G+ T +F
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCV--AFNPKDPSTFASGCLDRTVKVWS---LGQSTPNF 177
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 71/181 (39%), Gaps = 26/181 (14%)
Query: 119 IVRKEGH---IYSLAA--SGDLLYTGSDSKNIRVWK---NLKEFSGFKSNSGLVKAIIIT 170
+V E H I S+A + + +GSD +++W N F+ + V +
Sbjct: 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149
Query: 171 -GDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSL--PTFKDYVKSSVNPKNYVEVRRNR 227
D + +G D +++W + + P+ G + DY P Y+ +
Sbjct: 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP--YMITASDD 207
Query: 228 NVLKIRHYDAVSCLS-------------LNAEQGLLYSGSWDKTLKVWRISDCKCLESIN 274
+KI Y SC++ + ++ SGS D TLK+W S K +++N
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Query: 275 A 275
Sbjct: 268 V 268
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 30/179 (16%)
Query: 157 FKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSS-- 214
F + S VK I + T G++ +W N V S+ + V++
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELW-----NYETQVEVRSIQVTETPVRAGKF 63
Query: 215 VNPKNYVEVRRNRNVLKIRHY-------------DAVSCLSLNAEQGLLYSGSWDKTLKV 261
+ KN++ V + +++ +Y D + ++++ + + SGS D T+K+
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 262 WRISDCKCLE-SINAHDDAINSVVAGFD----SLVFTGSADGTVKVWRRELQGKGTKHF 315
W + LE + H+ + V F+ S +G D TVKVW G+ T +F
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCV--AFNPKDPSTFASGCLDRTVKVWS---LGQSTPNF 177
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 36/135 (26%)
Query: 132 SGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKA--IIITGDSNKIFTGHQDGKIRI 187
SGD +GSD R++ + +E + + S + A + + +F G+ D I +
Sbjct: 251 SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINV 310
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ 247
W V ++ +R + H + VS L ++ +
Sbjct: 311 WDV--------------------------------LKGSRVSILFGHENRVSTLRVSPDG 338
Query: 248 GLLYSGSWDKTLKVW 262
SGSWD TL+VW
Sbjct: 339 TAFCSGSWDHTLRVW 353
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 234 HYDAVSCLSLN-AEQG-LLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLV 291
H V CL L +E G SG DK VW + +C+++ H+ +NSV
Sbjct: 195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDA 254
Query: 292 F-TGSADGTVKVW 303
F +GS D T +++
Sbjct: 255 FASGSDDATCRLY 267
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 118 SIVRKEGHIY-----SLAASGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIIT 170
+I KE I+ + SG LL+ G + I VW LK S + V + ++
Sbjct: 276 AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS 335
Query: 171 GDSNKIFTGHQDGKIRIW 188
D +G D +R+W
Sbjct: 336 PDGTAFCSGSWDHTLRVW 353
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 21/157 (13%)
Query: 138 TGSDSKNIRVWK---NLKEFSGFKSNSGLVKAIIIT-GDSNKIFTGHQDGKIRIWKVSRK 193
+GSD +++W N F+ + V + D + +G D +++W + +
Sbjct: 114 SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173
Query: 194 NPSVHKRVGSL--PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLS--------- 242
P+ G + DY P Y+ + +KI Y SC++
Sbjct: 174 TPNFTLTTGQERGVNYVDYYPLPDKP--YMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231
Query: 243 ----LNAEQGLLYSGSWDKTLKVWRISDCKCLESINA 275
+ ++ SGS D TLK+W S K +++N
Sbjct: 232 SFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 30/179 (16%)
Query: 157 FKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSS-- 214
F + S VK I + T G++ +W N V S+ + V++
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELW-----NYETQVEVRSIQVTETPVRAGKF 63
Query: 215 VNPKNYVEVRRNRNVLKIRHY-------------DAVSCLSLNAEQGLLYSGSWDKTLKV 261
+ KN++ V + +++ +Y D + ++++ + + SGS D T+K+
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 262 WRISDCKCLE-SINAHDDAINSVVAGFD----SLVFTGSADGTVKVWRRELQGKGTKHF 315
W + LE + H+ + V F+ S +G D TVKVW G+ T +F
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCV--AFNPKDPSTFASGCLDRTVKVWSL---GQSTPNF 177
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 64/155 (41%), Gaps = 19/155 (12%)
Query: 167 IIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRN 226
+ ++ D + G QD K+ ++K+S + S K + P V S N V ++
Sbjct: 454 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTI-VHPAEITSVAFSNNGAFLVATDQS 512
Query: 227 RNVLKIR---------------HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI---SDCK 268
R V+ H V+C+S + + L +GS D ++ VW + SD
Sbjct: 513 RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP 572
Query: 269 CLESINAHDDAINSVVAGFDSLVFTGSADGTVKVW 303
+ ++NSV+ ++ + + D +K W
Sbjct: 573 IIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 607
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 102/254 (40%), Gaps = 35/254 (13%)
Query: 102 YSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKN--LKEFSGFKS 159
Y+P+ +L +S G G+IV LY G D V+++ LK +
Sbjct: 198 YNPDGSLFASTGGD-GTIV---------------LYNGVDGTKTGVFEDDSLKNVA---- 237
Query: 160 NSGLVKAIIITGDSNKIFTGHQDGKIRIWKVS----RKNPSVHKRV-----GSLPTFKDY 210
+SG V + + D KI + D I+IW V+ K V R+ G + T +
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 297
Query: 211 VKSSVNP-KNYVEVRRNR-NVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK 268
V S N N+V + ++ H A++ LS +A+ L+S + + W IS
Sbjct: 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357
Query: 269 CLESI-NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAI 327
+ H I + +FT S D +KV G + +A L Q +
Sbjct: 358 SNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL 417
Query: 328 TALAVNQESAVVYC 341
A++ + + AV C
Sbjct: 418 -AVSADGDIAVAAC 430
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 10/127 (7%)
Query: 223 VRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI---NAHDDA 279
V + ++ + H +V L+ + + + S S DKT+K+W ++ K ++I +D
Sbjct: 227 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ 286
Query: 280 INSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVV 339
++ +LV + SA+G + EL + QV AITAL+ + + +
Sbjct: 287 QLGIIWTKQALV-SISANGFINFVNPELGS------IDQVRYGHNKAITALSSSADGKTL 339
Query: 340 YCGSSDG 346
+ ++G
Sbjct: 340 FSADAEG 346
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 234 HYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKC-LESINAHDDAINSV 283
H V+CLS N + +L +GS DKT+ +W + + K L + +H D I V
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQV 325
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 234 HYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKC-LESINAHDDAINSV 283
H V+CLS N + +L +GS DKT+ +W + + K L + +H D I V
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQV 325
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 21/159 (13%)
Query: 136 LYTGSDSKNIRVWK---NLKEFSGFKSNSGLVKAIIIT-GDSNKIFTGHQDGKIRIWKVS 191
+ +GSD +++W N F+ + V + D + +G D +++W +
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 192 RKNPSVHKRVGSL--PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLS------- 242
+ P+ G + DY P Y+ + +KI Y SC++
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLPDKP--YMITASDDLTIKIWDYQTKSCVATLEGHMS 229
Query: 243 ------LNAEQGLLYSGSWDKTLKVWRISDCKCLESINA 275
+ ++ SGS D TLK+W S K +++N
Sbjct: 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 27/167 (16%)
Query: 157 FKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSS-- 214
F + S VK I + T G++ IW N V S+ + V++
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIW-----NYETQVEVRSIQVTETPVRAGKF 63
Query: 215 VNPKNYVEVRRNRNVLKIRHY-------------DAVSCLSLNAEQGLLYSGSWDKTLKV 261
+ KN++ V + +++ +Y D + ++++ + + SGS D T+K+
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 262 WRISDCKCLE-SINAHDDAINSVVAGFD----SLVFTGSADGTVKVW 303
W + LE + H+ + V F+ S +G D TVKVW
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCV--AFNPKDPSTFASGCLDRTVKVW 168
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 274 NAHDDAINSVVAGFD-----SLVFTGSADGTVKVW-----RRELQGKGTKHFLAQV 319
AHDDAI SV G + V TGS D VKVW R +LQ H L V
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV 84
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 231 KIRHYDAVSCLSLNA---EQGLLYSGSWDKTLKVWRISDCKC-LESINAHDDAINSVVAG 286
+I + C + A +Q L +G + L +W + + + S+ H + IN++
Sbjct: 61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGI 120
Query: 287 FDSL-------VFTGSADGTVKVW 303
+ TGS DGTVKVW
Sbjct: 121 GGLGIGEGAPEIVTGSRDGTVKVW 144
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV-VAGFDSLVF 292
H ++ L L S S D LK+W + D ++ H + + + V
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 197
Query: 293 TGSADGTVKVWR 304
+ S DGT+++W
Sbjct: 198 SASLDGTIRLWE 209
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV-VAGFDSLVF 292
H ++ L L S S D LK+W + D ++ H + + + V
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 194
Query: 293 TGSADGTVKVWR 304
+ S DGT+++W
Sbjct: 195 SASLDGTIRLWE 206
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAIN 281
+ H V LS N L S WD L+ W + + + ++N H D I
Sbjct: 297 EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE 347
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAI 280
+ H V LS N L S WD L+ W + + + ++N H D I
Sbjct: 287 EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 336
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,365,815
Number of Sequences: 62578
Number of extensions: 491789
Number of successful extensions: 1463
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 903
Number of HSP's gapped (non-prelim): 335
length of query: 347
length of database: 14,973,337
effective HSP length: 100
effective length of query: 247
effective length of database: 8,715,537
effective search space: 2152737639
effective search space used: 2152737639
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)